BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8891
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 11 KVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTY---DGAGTTIISGHFDKKVRFWDFRA 67
K+VSGS DRT++IWDLR+ + S + + T G G I +G D+ VR WD
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-- 236
Query: 68 EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127
E + LD + T S + + T DG +++SG D+ V+ W+ +
Sbjct: 237 -------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQN 287
Query: 128 EEKVRD 133
D
Sbjct: 288 ANNKSD 293
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTE-TKFAGSSCNDLVTYD--GAGTTIISGHFDKKVR 61
F D + +G+ DR ++IWD+ + + D+ + D +G ++SG D+ VR
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 121
WD R + + + +T++ +S G G I +G D+ VR
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGD------------------GKYIAAGSLDRAVR 232
Query: 122 FWD 124
WD
Sbjct: 233 VWD 235
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCND---LVTYDG-------AGTT---- 50
F D VVSGS DR++K+W+L++ K + N VTY G TT
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 51 -IISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
I+SG D+ V FWD ++ + ++ H + S+ ++ G+ G N T
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL---GPEYNVFAT----- 375
Query: 109 TTIISGHFDKKVRFWDFR 126
G D K R W ++
Sbjct: 376 -----GSGDCKARIWKYK 388
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 65/213 (30%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLR-----------------STETKFAGSSCNDL--- 41
C KF D + +G C++T +++ + + S +DL
Sbjct: 69 CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 127
Query: 42 -VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCN 99
V + G + +G D+ +R WD + V ++ H + I SLD
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD--------------- 172
Query: 100 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK 159
Y +G ++SG D+ VR WD R + + + +T++ +S G ++ A
Sbjct: 173 ----YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA---- 224
Query: 160 VQCDFTRXXXXXXXXXXXXGSIDGNIYVWDCNT 192
GS+D + VWD T
Sbjct: 225 -------------------GSLDRAVRVWDSET 238
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + + V D + IISG DK ++ W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64 --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
D+ ++ +V E + +S G E F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + + ++ SL S +Y+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
A G KV
Sbjct: 255 ATATGIKV 262
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 36/140 (25%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-------GSS-----CNDLVTYDGAGT 49
A G P ++S S D+TL W L + KF G S C +T DGA
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGA-- 78
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-VTYDGAG 108
+S +DK +R WD E T +F G + + V D
Sbjct: 79 YALSASWDKTLRLWDVATGE-------------------TYQRFVGHKSDVMSVDIDKKA 119
Query: 109 TTIISGHFDKKVRFWDFRAE 128
+ IISG DK ++ W + +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQ 139
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + + V D + IISG DK ++ W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64 DFRAE------------EKVRDIELHGK---------------ITSLDLSK-GTETKFAG 95
+ + +VR + + + +L++ E F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + + ++ SL S +Y+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
A G KV
Sbjct: 255 ATATGIKV 262
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 36/135 (26%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKFA-------GSS-----CNDLVTYDGAGTTIISG 54
G P ++S S D+TL W L + KF G S C +T DGA +S
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGA--YALSA 83
Query: 55 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-VTYDGAGTTIIS 113
+DK +R WD E T +F G + + V D + IIS
Sbjct: 84 SWDKTLRLWDVATGE-------------------TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 114 GHFDKKVRFWDFRAE 128
G DK ++ W + +
Sbjct: 125 GSRDKTIKVWTIKGQ 139
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + + V D + IISG DK ++ W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64 --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
D+ ++ +V E + +S G E F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + + ++ SL S +Y+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
A G KV
Sbjct: 255 ATATGIKV 262
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 28/131 (21%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKF--------AGSSCNDLVTYDGAGTTIISGHFDK 58
G P ++S S D+TL W L + KF S T G +S +DK
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-VTYDGAGTTIISGHFD 117
+R WD E T +F G + + V D + IISG D
Sbjct: 88 TLRLWDVATGE-------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 118 KKVRFWDFRAE 128
K ++ W + +
Sbjct: 129 KTIKVWTIKGQ 139
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + + V D + IISG DK ++ W
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 64 --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
D+ ++ +V E + +S G E F G
Sbjct: 129 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 188
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + + ++ SL S +Y+
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 155 --AEGFKV 160
A G KV
Sbjct: 249 ATATGIKV 256
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 28/131 (21%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKF--------AGSSCNDLVTYDGAGTTIISGHFDK 58
G P ++S S D+TL W L + KF S T G +S +DK
Sbjct: 22 GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 81
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-VTYDGAGTTIISGHFD 117
+R WD E T +F G + + V D + IISG D
Sbjct: 82 TLRLWDVATGE-------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 118 KKVRFWDFRAE 128
K ++ W + +
Sbjct: 123 KTIKVWTIKGQ 133
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + + V D + IISG DK ++ W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64 --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
D+ ++ +V E + +S G E F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + + ++ SL S +Y+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
A G KV
Sbjct: 255 ATATGIKV 262
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 36/140 (25%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-------GSS-----CNDLVTYDGAGT 49
A G P ++S S D+TL W L + KF G S C +T DGA
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGA-- 78
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-VTYDGAG 108
+S +DK +R WD E T +F G + + V D
Sbjct: 79 YALSASWDKTLRLWDVATGE-------------------TYQRFVGHKSDVMSVDIDKKA 119
Query: 109 TTIISGHFDKKVRFWDFRAE 128
+ IISG DK ++ W + +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQ 139
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 11 KVVSGSCDRTLKIWDLRSTET------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
+VVSGS D TL++WD+ + + A C V YDG ++SG +D V+ WD
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC---VQYDGR--RVVSGAYDFMVKVWD 265
Query: 65 FRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 124
E + ++ H N + + G ++SG D +R WD
Sbjct: 266 PETETCLHTLQGH--------------------TNRVYSLQFDGIHVVSGSLDTSIRVWD 305
Query: 125 FRAEEKVRDIELHGKITS 142
+ + H +TS
Sbjct: 306 VETGNCIHTLTGHQSLTS 323
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 64/220 (29%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA-------GTTIISG 54
C +F G+ ++VSGS D TLK+W + G LV + G IISG
Sbjct: 124 CLQFCGN--RIVSGSDDNTLKVW------SAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 175
Query: 55 HFDKKVRFWDFRAEE----------KVRDIELHGK------------ITSLDLSKGTETK 92
D+ ++ W+ E VR + LH K + ++ +
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 93 FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYF 152
+ V YDG ++SG +D V+ WD E + ++ H + Y
Sbjct: 236 MGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGH---------TNRVYS 284
Query: 153 VFAEGFKVQCDFTRXXXXXXXXXXXXGSIDGNIYVWDCNT 192
+ +G V GS+D +I VWD T
Sbjct: 285 LQFDGIHV----------------VSGSLDTSIRVWDVET 308
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDK 58
C ++ D +VVSG+ D +K+WD TET G + N + + G ++SG D
Sbjct: 244 CVQY--DGRRVVSGAYDFMVKVWD-PETETCLHTLQGHT-NRVYSLQFDGIHVVSGSLDT 299
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
+R WD + + H +TS G E K ++SG+ D
Sbjct: 300 SIRVWDVETGNCIHTLTGHQSLTS-----GMELK---------------DNILVSGNADS 339
Query: 119 KVRFWDFRAEEKVRDIE 135
V+ WD + + ++ ++
Sbjct: 340 TVKIWDIKTGQCLQTLQ 356
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 26/132 (19%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDGAGTTIISGHFDKKVRFWDFR 66
D VVSGS D ++++WD+ + + L + + ++SG+ D V+ WD +
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 67 AEEKVRDIELHGK----ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
+ ++ ++ K +T L +K N ++T GT V+
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNK-----------NFVITSSDDGT----------VKL 386
Query: 123 WDFRAEEKVRDI 134
WD + E +R++
Sbjct: 387 WDLKTGEFIRNL 398
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-----CNDLVTYDGAGTTIISGHFDKKV 60
D +VS S D+TLKIWD+ S + G S CN ++ I+SG FD+ V
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESV 134
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 120
R WD + ++ + H S V ++ G+ I+S +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVS------------------AVHFNRDGSLIVSSSYDGLC 176
Query: 121 RFWDFRAEEKVRDI 134
R WD + + ++ +
Sbjct: 177 RIWDTASGQCLKTL 190
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 33 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 132
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + ++ + H S
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVS 156
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D LK+WD ++ C L TY G G
Sbjct: 202 KFSPNGKYILAATLDNDLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 252
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-----CNDLVTYDGAGTTIISGHFDKKV 60
D +VS S D+TLKIWD+ S + G S CN ++ I+SG FD+ V
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESV 134
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 120
R WD + ++ + H S V ++ G+ I+S +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVS------------------AVHFNRDGSLIVSSSYDGLC 176
Query: 121 RFWDFRAEEKVRDI 134
R WD + + ++ +
Sbjct: 177 RIWDTASGQCLKTL 190
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
R WD + + ++ T +D + V + G I++ D
Sbjct: 175 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 217
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
++ WD+ + ++ H K + Y +FA F V
Sbjct: 218 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 257
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQ 279
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 33 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 132
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + ++ + H S
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVS 156
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 252
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCN-DLVTYDGAGTTIISGHFDKKVRFW 63
D +S S D+TL++WD+ + ET +F G + V D + IISG DK ++ W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 64 --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
D+ ++ +V E + +S G E F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 96 SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+ N + +T GT I S D ++ W+ A++ + ++ SL S +Y+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
A G KV
Sbjct: 255 ATATGIKV 262
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 28/136 (20%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--------AGSSCNDLVTYDGAGTTIIS 53
A G P ++S S D+TL W L + KF S T G +S
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 54 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTII 112
+DK +R WD E + H + S+D+ D + II
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-------------------DKKASXII 123
Query: 113 SGHFDKKVRFWDFRAE 128
SG DK ++ W + +
Sbjct: 124 SGSRDKTIKVWTIKGQ 139
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSS----CNDLVTYDGAGTTIISGHFDK 58
F ++++ S D T +WD+ S + F G C DL + G T +SG DK
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-TGNTFVSGGCDK 220
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
K WD R+ + V+ E H S + V Y +G SG D
Sbjct: 221 KAMVWDMRSGQCVQAFETH------------------ESDVNSVRYYPSGDAFASGSDDA 262
Query: 119 KVRFWDFRAEEKV 131
R +D RA+ +V
Sbjct: 263 TCRLYDLRADREV 275
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 44/196 (22%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVT--YDGAGTTIISGHFD 57
+C + D ++VS S D + +WD +T + A + C ++ Y +G I G D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 58 KKVRFWDF------RAEEKVRDIELH----------------------GKITSLDLSKGT 89
K + K + + +H G D+ G
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 90 ETK-FAGSS----CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD 144
+ F G C DL + G T +SG DKK WD R+ + V+ E H D
Sbjct: 188 LLQSFHGHGADVLCLDLAPSE-TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----D 242
Query: 145 LSKGKYYF---VFAEG 157
++ +YY FA G
Sbjct: 243 VNSVRYYPSGDAFASG 258
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 12 VVSGSCDRTLKIWDLRST------ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
+VSGS DRT+++WD++ E + C D+V Y I++G D + W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKL 234
Query: 66 RAEEKVRDIELHGKITSLDLSKGTETK---FAG---SSCNDLVTYDGAGTTIISGHFDKK 119
E V D HG+ L T + F G + T G G ++SG +D
Sbjct: 235 PKESSVPD---HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 120 VRFWD 124
+ WD
Sbjct: 292 LIVWD 296
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV---TYDGAGTTIISGHFDKKVRFW 63
G VVSGS D TL +WD+ + + S D + YD IS D +R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 64 DFRAEEKVRDIELHGKITSL 83
D E + ++ H + L
Sbjct: 338 DLENGELMYTLQGHTALVGL 357
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 35/146 (23%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA--------GTTIIS 53
C +F + V++G+ D+ ++++D S KF L +DG G ++S
Sbjct: 127 CLQF--EDNYVITGADDKMIRVYD--SINKKF----LLQLSGHDGGVWALKYAHGGILVS 178
Query: 54 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS 113
G D+ VR WD + E H C D+V Y I++
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTV---------------RCLDIVEYKNI-KYIVT 222
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGK 139
G D + W E V D HG+
Sbjct: 223 GSRDNTLHVWKLPKESSVPD---HGE 245
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 24/161 (14%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS----TETKFAGSSCNDLVTYDGA--GTTIISG 54
+ F D ++VSG D L++W+++ T ++ A + V + + I+SG
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 55 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG 114
+D V+ WD V D++ H T + S VT G+ S
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGH-------------TNYVTS-----VTVSPDGSLCASS 214
Query: 115 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155
D R WD E + ++ I + S +Y+ A
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 40/186 (21%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIW----DLRSTETKF--------AGSSCNDLVTYDGAGT 49
C + TKVVS S D+TL W D S+E + S+ V G
Sbjct: 21 CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGN 80
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
+S +D +R W+ + + H K + S+ S +G N L ++ G
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Query: 109 --------------------------TTIISGHFDKKVRFWDFRAEEKVRDIELHGK-IT 141
I+SG +D V+ WD V D++ H +T
Sbjct: 141 ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVT 200
Query: 142 SLDLSK 147
S+ +S
Sbjct: 201 SVTVSP 206
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 34/156 (21%)
Query: 2 CAKFLG--DPTKVVSGSCDRTLKIWDLRSTE--TKFAG-SSCNDLVTYDGAGTTIISGHF 56
C +F D +VSG D +K+WDL + T G ++ VT G+ S
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFA----GSSCNDL----------- 101
D R WD E + ++ I + S A G DL
Sbjct: 217 DGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAP 276
Query: 102 --------------VTYDGAGTTIISGHFDKKVRFW 123
+ + G+T+ SG+ D +R W
Sbjct: 277 EHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 12 VVSGSCDRTLKIWDLRST------ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
+VSGS DRT+++WD++ E + C D+V Y I++G D + W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKL 234
Query: 66 RAEEKVRDIELHGKITSLDLSKGTETK---FAG---SSCNDLVTYDGAGTTIISGHFDKK 119
E V D HG+ L T + F G + T G G ++SG +D
Sbjct: 235 PKESSVPD---HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 120 VRFWD 124
+ WD
Sbjct: 292 LIVWD 296
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV---TYDGAGTTIISGHFDKKVRFW 63
G VVSGS D TL +WD+ + + S D + YD IS D +R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 64 DFRAEEKVRDIELHGKITSL 83
D E ++ H + L
Sbjct: 338 DLENGELXYTLQGHTALVGL 357
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 35/146 (23%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA--------GTTIIS 53
C +F + V++G+ D+ ++++D S KF L +DG G ++S
Sbjct: 127 CLQF--EDNYVITGADDKXIRVYD--SINKKF----LLQLSGHDGGVWALKYAHGGILVS 178
Query: 54 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS 113
G D+ VR WD + E H C D+V Y I++
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTV---------------RCLDIVEYKNI-KYIVT 222
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGK 139
G D + W E V D HG+
Sbjct: 223 GSRDNTLHVWKLPKESSVPD---HGE 245
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 177 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 219
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 259
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 36 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 135
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVS 159
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 255
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 188 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 230
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 231 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 270
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 47 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 104
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 146
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVS 170
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 216 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 266
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 267 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 33 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 132
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS 156
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 252
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 167 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 209
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 210 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 249
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 26 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 125
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVS 149
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 195 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 245
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 33 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 132
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS 156
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 252
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 170 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 212
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 213 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSVT----------GGKWIV 252
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 29 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 128
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVS 152
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 198 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 248
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 171 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 213
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 253
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 30 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 129
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVS 153
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 199 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 249
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 177 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 219
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 259
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 36 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 135
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVS 159
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 255
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 171 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 213
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 253
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 30 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 129
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVS 153
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 199 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 249
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
R WD + + ++ T +D + V + G I++ D
Sbjct: 178 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 220
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
++ WD+ + ++ H K + Y +FA F V
Sbjct: 221 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 260
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQ 282
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 36 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 135
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVS 159
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 205 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 255
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + + S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 33 KFSPNGEWLAASSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 132
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS 156
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 202 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 252
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
R WD + + ++ T +D + V + G I++ D
Sbjct: 172 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 214
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
++ WD+ + ++ H K + Y +FA F V
Sbjct: 215 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 254
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 31 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 130
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVS 154
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 200 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 250
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 251 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
R WD + + ++ T +D + V + G I++ D
Sbjct: 177 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 219
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
++ WD+ + ++ H K + Y +FA F V
Sbjct: 220 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 259
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQ 281
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 35 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 134
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVS 158
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 204 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 254
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 255 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
R WD + + ++ T +D + V + G I++ D
Sbjct: 196 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 238
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
++ WD+ + ++ H K + Y +FA F V
Sbjct: 239 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 278
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQ 300
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 54 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 111
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 153
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVS 177
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 223 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 273
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 274 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
C F +VSGS D +++IWD+++ +T A S V ++ G+ I+S +D
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
R WD + + ++ T +D + V + G I++ D
Sbjct: 194 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 236
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
++ WD+ + ++ H K + Y +FA F V
Sbjct: 237 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 276
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
GS D +Y+W+ T+++ L+
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQ 298
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDL----VTYDGAGTTIISGHFDK 58
KF + + S S D+ +KIW + + KF + S + L V + ++S DK
Sbjct: 52 KFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
++ WD + + ++ ++ H CN ++ I+SG FD+
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFC--------------CN----FNPQSNLIVSGSFDE 151
Query: 119 KVRFWDFRAEEKVRDIELHGKITS 142
VR WD + + ++ + H S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVS 175
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG---------------AG 48
KF + +++ + D TLK+WD ++ C L TY G G
Sbjct: 221 KFSPNGKYILAATLDNTLKLWD-------YSKGKC--LKTYTGHKNEKYCIFANFSVTGG 271
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS 97
I+SG D V W+ + +E V+ ++ H + TE A ++
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 72/227 (31%)
Query: 12 VVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68
+VS S D+T+K+W++++ +T +V + GT I S D+ VR W +
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 69 EKVRDIELHGKI------------TSLDLSKGTETKFAGSSCNDL--------------- 101
E ++ H + +S+ + G+ETK +G L
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 102 -----------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSL 143
V + G I+S DK +R WD++ + ++ + H +TSL
Sbjct: 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 144 DLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXXGSIDGNIYVWDC 190
D K Y V GS+D + VW+C
Sbjct: 387 DFHKTAPYVV------------------------TGSVDQTVKVWEC 409
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 12 VVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68
++SGS D+T+K+WD+ + T + V + G I+S DK +R WD++ +
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 69 EKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
++ + H +TSLD K +++G D+ V+ W+ R
Sbjct: 371 RCMKTLNAHEHFVTSLDFHK-------------------TAPYVVTGSVDQTVKVWECR 410
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 12 VVSGSCDRTLKIWDLRST--ETKFAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67
+VS S D T+K+WD + E G S D +++D +G + S D ++ WDF+
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQD-ISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 68 EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
E +R + H S V+ G I+S DK ++ W+ +
Sbjct: 182 FECIRTMHGHDHNVS------------------SVSIMPNGDHIVSASRDKTIKMWEVQ 222
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTI-----------ISGHF 56
D +KV + SCD+T K+WDL S + + +D TI ++G +
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAI-------QIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 57 DKKVRFWDFRAEEKVRDIELHGKITSLDL 85
DK ++FWD R+ + ++L + D+
Sbjct: 150 DKTLKFWDTRSSNPMMVLQLPERCYCADV 178
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL 101
V + G+ + + DK + WD + + ++ + + ++ K SC
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-----PNYSC--- 143
Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDL 145
+++G +DK ++FWD R+ + ++L + D+
Sbjct: 144 ---------VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV 178
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKF------AGSSCNDLVTYDGAGTTIISGHFD 57
K L D ++ G TL IWDL + + + +C L + S D
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSD 162
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
+ WD + VR + H G+SC D+ GT + +G D
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTD---------------GASCIDI---SNDGTKLWTGGLD 204
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSK-GKYYFVFAEGFKVQ 161
VR WD R +++ + +I SL G++ V E V+
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 2 CAKFLGDPTKVVSGSC--DRTLKIWDL------RSTETKFAGSSCNDLVTYDGAGTTIIS 53
C P V SC D + +WDL R + G+SC D+ GT + +
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI---SNDGTKLWT 200
Query: 54 GHFDKKVRFWDFRAEEKVRDIELHGKITSL 83
G D VR WD R +++ + +I SL
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN-DLVTYDGAGTTIISGHFD 57
M D VSG+CD + K+WD+R + F G + + + + G +G D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 58 KKVRFWDFRAEEKVRDI---ELHGKITSLDLSKGTETKFAGS---SCN--DLVTYDGAGT 109
R +D RA++++ + ITS+ SK AG +CN D + D AG
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 306
Query: 110 TIISGHFDKKV 120
+++GH D +V
Sbjct: 307 -VLAGH-DNRV 315
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN-DLVTYDGAGTTIISGHFD 57
M D VSG+CD + K+WD+R + F G + + + + G +G D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 58 KKVRFWDFRAEEKVRDI---ELHGKITSLDLSKGTETKFAGS---SCN--DLVTYDGAGT 109
R +D RA++++ + ITS+ SK AG +CN D + D AG
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 306
Query: 110 TIISGHFDKKV 120
+++GH D +V
Sbjct: 307 -VLAGH-DNRV 315
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN-DLVTYDGAGTTIISGHFD 57
M D VSG+CD + K+WD+R + F G + + + + G +G D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 58 KKVRFWDFRAEEKVRDI---ELHGKITSLDLSKGTETKFAGS---SCN--DLVTYDGAGT 109
R +D RA++++ + ITS+ SK AG +CN D + D AG
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 306
Query: 110 TIISGHFDKKV 120
+++GH D +V
Sbjct: 307 -VLAGH-DNRV 315
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN-DLVTYDGAGTTIISGHFD 57
M D VSG+CD + K+WD+R + F G + + + + G +G D
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
Query: 58 KKVRFWDFRAEEKVRDI---ELHGKITSLDLSKGTETKFAGS---SCN--DLVTYDGAGT 109
R +D RA++++ + ITS+ SK AG +CN D + D AG
Sbjct: 259 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 317
Query: 110 TIISGHFDKKV 120
+++GH D +V
Sbjct: 318 -VLAGH-DNRV 326
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN-DLVTYDGAGTTIISGHFD 57
M D VSG+CD + K+WD+R + F G + + + + G +G D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 58 KKVRFWDFRAEEKVRDI---ELHGKITSLDLSKGTETKFAGS---SCN--DLVTYDGAGT 109
R +D RA++++ + ITS+ SK AG +CN D + D AG
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG- 306
Query: 110 TIISGHFDKKV 120
+++GH D +V
Sbjct: 307 -VLAGH-DNRV 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 12 VVSGSCDRTLKIWDLR--STETKFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFWDFRAE 68
+SGS D TL++WDL +T +F G + + L V + I+SG DK ++ W+
Sbjct: 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160
Query: 69 EK--VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 125
K V+D E H + S +F+ +S N + I+S +DK V+ W+
Sbjct: 161 CKYTVQD-ESHSEWVSC-------VRFSPNSSNPI---------IVSCGWDKLVKVWNL 202
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 28/169 (16%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST-------ETKFAGSSCNDLVTYDGAGTTIIS 53
+ F D ++VSGS D+T+K+W+ E+ SC + + + I+S
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-SPNSSNPIIVS 190
Query: 54 GHFDKKVRFWDF-RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTII 112
+DK V+ W+ + K I G + ++ +S GS C
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD------GSLC-------------A 231
Query: 113 SGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ 161
SG D + WD + + ++ I +L S +Y+ A G ++
Sbjct: 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 280
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 32/127 (25%)
Query: 9 PTKVVSGSCDRTLKIWDLRSTETKFA-------GSS--CNDLVTYDGAGTTIISGHFDKK 59
P ++S S D+T+ +W L ET + G S +D+V G +SG +D
Sbjct: 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGT 109
Query: 60 VRFWDFRAEEKVRDIELHGKITSLDLSKGTET-KFAGSSCNDL-VTYDGAGTTIISGHFD 117
+R W DL+ GT T +F G + + L V + I+SG D
Sbjct: 110 LRLW--------------------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 118 KKVRFWD 124
K ++ W+
Sbjct: 150 KTIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 12 VVSGSCDRTLKIWDLR--STETKFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFWDFRAE 68
+SGS D TL++WDL +T +F G + + L V + I+SG DK ++ W+
Sbjct: 78 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 137
Query: 69 EK--VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 125
K V+D E H + S +F+ +S N + I+S +DK V+ W+
Sbjct: 138 CKYTVQD-ESHSEWVSC-------VRFSPNSSNPI---------IVSCGWDKLVKVWNL 179
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 28/169 (16%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST-------ETKFAGSSCNDLVTYDGAGTTIIS 53
+ F D ++VSGS D+T+K+W+ E+ SC + + + I+S
Sbjct: 109 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-SPNSSNPIIVS 167
Query: 54 GHFDKKVRFWDF-RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTII 112
+DK V+ W+ + K I G + ++ +S GS C
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD------GSLC-------------A 208
Query: 113 SGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ 161
SG D + WD + + ++ I +L S +Y+ A G ++
Sbjct: 209 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 257
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 32/127 (25%)
Query: 9 PTKVVSGSCDRTLKIWDLRSTETKFA-------GSS--CNDLVTYDGAGTTIISGHFDKK 59
P ++S S D+T+ +W L ET + G S +D+V G +SG +D
Sbjct: 28 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGT 86
Query: 60 VRFWDFRAEEKVRDIELHGKITSLDLSKGTET-KFAGSSCNDL-VTYDGAGTTIISGHFD 117
+R W DL+ GT T +F G + + L V + I+SG D
Sbjct: 87 LRLW--------------------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 118 KKVRFWD 124
K ++ W+
Sbjct: 127 KTIKLWN 133
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV------TYDGAGTTIISGHFDKKVR 61
D ++ SG D ++IWD RS+ KF ++ N V + G DK++
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 62 FWDFRAEEKVRDIELHGKITSL 83
FW+ +V ++ ++TSL
Sbjct: 288 FWNAATGARVNTVDAGSQVTSL 309
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTET-KFAGSSCNDLVTYDG 106
G + SG D V+ WD R+ K T + + + + N L T G
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIP--------KFTKTNHNAAVKAVAWCPWQSNLLAT--G 278
Query: 107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK 159
GT DK++ FW+ +V ++ ++TSL S + GF
Sbjct: 279 GGT------MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 12 VVSGSCDRTLKIWDLRSTE-TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70
+VS S DRT+K+W+ + E + + ++SG D +R WD
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 328
Query: 71 VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127
+R +E H ++ + +D I+SG +D K++ WD A
Sbjct: 329 LRVLEGHEELVR------------------CIRFDNK--RIVSGAYDGKIKVWDLVA 365
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 32/165 (19%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDL-VTYDGAGTTIISGHFDK 58
C ++ D K+VSG D T+KIWD + E K G + + L + YD II+G D
Sbjct: 138 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDS 193
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT-------- 110
VR WD E + + +H L L S + +D A T
Sbjct: 194 TVRVWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 111 ----------------IISGHFDKKVRFWDFRAEEKVRDIELHGK 139
I+S D+ ++ W+ E VR + H +
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 28/136 (20%)
Query: 12 VVSGSCDRTLKIWDLRST------ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
+V+ S DR++ +WD+ S + ++V +D I+S D+ ++ W+
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNT 283
Query: 66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 125
E VR + H + G +C ++SG D +R WD
Sbjct: 284 STCEFVRTLNGHKR---------------GIAC-----LQYRDRLVVSGSSDNTIRLWDI 323
Query: 126 RAEEKVRDIELHGKIT 141
+R +E H ++
Sbjct: 324 ECGACLRVLEGHEELV 339
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSC-NDLVTYDGA-------GTTI 51
C +F D ++VSG+ D +K+WDL + AG+ C LV + G I
Sbjct: 341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI 398
Query: 52 ISGHFDKKVRFWDF 65
+S D + WDF
Sbjct: 399 VSSSHDDTILIWDF 412
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137
S+ + +FA SS ++++ +G T+ S +D K+RFWD + +E++ + +H
Sbjct: 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 32 KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 77
+FA SS ++++ +G T+ S +D K+RFWD + +E++ + +H
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137
S+ + +FA SS ++++ +G T+ S +D K+RFWD + +E++ + +H
Sbjct: 291 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 32 KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 77
+FA SS ++++ +G T+ S +D K+RFWD + +E++ + +H
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.012, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 32/172 (18%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF----AGSSCNDLVTY-----DGAGTTI 51
+ F D ++VS S DRT+K+W+ E K+ G D V+ + TI
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 52 ISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
+S +DK V+ W+ + + H G ++++ +S GS C
Sbjct: 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD------GSLC------------ 576
Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA--EGFKV 160
SG D V WD +K+ +E + I +L S +Y+ A G K+
Sbjct: 577 -ASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKI 627
Score = 31.2 bits (69), Expect = 0.44, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 61/172 (35%), Gaps = 54/172 (31%)
Query: 2 CAKFLGD---PTKVVSGSCDRTLKIWDL-----RSTETKFAGSSCNDLVTYDGAGTTIIS 53
C +F + PT +VS S D+T+K+W+L RST G V+ DG + S
Sbjct: 522 CVRFSPNTLQPT-IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG--SLCAS 578
Query: 54 GHFDKKVRFWDFRAEEKVRDIELHGKITSL------------------------------ 83
G D V WD +K+ +E + I +L
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVED 638
Query: 84 ------------DLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 123
D S TK C L + G+T+ SG+ D +R W
Sbjct: 639 LKVDLKAEAEKADNSGPAATKRKVIYCTSL-NWSADGSTLFSGYTDGVIRVW 689
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 37/151 (24%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFA--------GSSCNDLVTYDGAGTTIISGHFDKKVRFW 63
+VS S D+++ +W L + + S + V G +SG +D ++R W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 64 DFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGS------------SCNDLVTYDGAG-- 108
D A R H K + S+ S + S C ++ G G
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 109 --------------TTIISGHFDKKVRFWDF 125
TI+S +DK V+ W+
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MCAKF-LGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN----DLVTYDGAG--TTIIS 53
MC F DP+ SG DRT+K+W L + F ++ + V Y +I+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 54 GHFDKKVRFWDFRAEEKVRDIELH 77
D ++ WD++ + V +E H
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
TT+ SG +V W++ + +VR I++ TET +
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSIQV------------TETPVRAGK------FIARK 67
Query: 109 TTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFV 153
II G D ++R +++ EKV D E H I S+ + K Y +
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 41/159 (25%)
Query: 13 VSGSCDRTLKIWDLRST----ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68
+SGSCD T+++WDLR T T + V + G +G D R +D R
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 69 EKVR---------DIELHGKITSLDLSKGTETKFAGSSCNDLVTYD-------------- 105
+++ D EL +TS+ S FAG S D +D
Sbjct: 282 HQLQVYNREPDRNDNELP-IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Query: 106 -------------GAGTTIISGHFDKKVRFWDFRAEEKV 131
G+ + +G +DK ++ W F K+
Sbjct: 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE------TKFAGSSCNDLVTY---DGAGTTII 52
C T++++GS D+T +WD+ + + ++F D+++ I
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 53 SGHFDKKVRFWDFRAEEK-VRDIELH-GKITSL 83
SG D VR WD R + VR H G I S+
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
T +I+G D+ WD +++ I + G S N L
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRI-------SIFGSEFPSGHTADVLSLSINSL-----NA 218
Query: 109 TTIISGHFDKKVRFWDFRAEEK-VRDIELH-GKITSL 143
ISG D VR WD R + VR H G I S+
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MCAKF-LGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN----DLVTYDGAG--TTIIS 53
MC F DP+ SG DRT+K+W L + F ++ + V Y +I+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 54 GHFDKKVRFWDFRAEEKVRDIELH 77
D ++ WD++ + V +E H
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
TT+ SG +V W++ + +VR I++ TET +
Sbjct: 30 TTLYSG----RVEIWNYETQVEVRSIQV------------TETPVRAGK------FIARK 67
Query: 109 TTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFV 153
II G D ++R +++ EKV D E H I S+ + K Y +
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MCAKF-LGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN----DLVTYDGAG--TTIIS 53
MC F DP+ SG DRT+K+W L + F ++ + V Y +I+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 54 GHFDKKVRFWDFRAEEKVRDIELH 77
D ++ WD++ + V +E H
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
TT+ SG +V W++ + +VR I++ TET +
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSIQV------------TETPVRAGK------FIARK 67
Query: 109 TTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFV 153
II G D ++R +++ EKV D E H I S+ + K Y +
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MCAKF-LGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN----DLVTYDGAG--TTIIS 53
MC F DP+ SG DRT+K+W L + F ++ + V Y +I+
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 54 GHFDKKVRFWDFRAEEKVRDIELH 77
D ++ WD++ + V +E H
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAG 108
TT+ SG +V W++ + +VR I++ TET +
Sbjct: 30 TTLYSG----RVELWNYETQVEVRSIQV------------TETPVRAGK------FIARK 67
Query: 109 TTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFV 153
II G D ++R +++ EKV D E H I S+ + K Y +
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL 113
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 20/200 (10%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLR--STETKFAG--SSCNDLVTYDGAGTTIISGHFDKK 59
KF ++S S D LKIW ++ S G ++ D+ D G ++S D
Sbjct: 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT 204
Query: 60 VRFWDFRAEEKV----RDIELHGKITSLDLSKGTETKF--AGSSCNDLVTYDGAGTTIIS 113
+R W+ + R H + S+ L GT+ + +S + + + G +I+
Sbjct: 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGKIT------SLDLSKGKYYFV-FAEGFKVQCDFTR 166
GH + + ++E+ I+L K T ++D + Y + + G Q D
Sbjct: 265 GHVSGVITVHNVFSKEQT--IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322
Query: 167 XXXXXXXXXXXXGSIDGNIY 186
G+ N+Y
Sbjct: 323 PECPVGEFLINEGTPINNVY 342
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 20/200 (10%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLR--STETKFAG--SSCNDLVTYDGAGTTIISGHFDKK 59
KF ++S S D LKIW ++ S G ++ D+ D G ++S D
Sbjct: 143 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT 201
Query: 60 VRFWDFRAEEKV----RDIELHGKITSLDLSKGTETKF--AGSSCNDLVTYDGAGTTIIS 113
+R W+ + R H + S+ L GT+ + +S + + + G +I+
Sbjct: 202 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 261
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGKIT------SLDLSKGKYYFV-FAEGFKVQCDFTR 166
GH + + ++E+ I+L K T ++D + Y + + G Q D
Sbjct: 262 GHVSGVITVHNVFSKEQT--IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 319
Query: 167 XXXXXXXXXXXXGSIDGNIY 186
G+ N+Y
Sbjct: 320 PECPVGEFLINEGTPINNVY 339
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
F D + S S D+T+K+W+ +T SS V + G TI S DK V+
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
W+ R+ +L +T G + G V + G TI S DK V+
Sbjct: 494 WN-------RNGQLLQTLT------GHSSSVRG------VAFSPDGQTIASASDDKTVKL 534
Query: 123 WDFRAE 128
W+ +
Sbjct: 535 WNRNGQ 540
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
F D + S S D+T+K+W+ +T SS V + G TI S DK V+
Sbjct: 24 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
W+ R+ +L +T G + G V + G TI S DK V+
Sbjct: 84 WN-------RNGQLLQTLT------GHSSSVRG------VAFSPDGQTIASASDDKTVKL 124
Query: 123 WDFRAE 128
W+ +
Sbjct: 125 WNRNGQ 130
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
F D + S S D+T+K+W+ +T SS V + G TI S DK V+
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
W+ R+ +L +T G + G V + G TI S DK V+
Sbjct: 207 WN-------RNGQLLQTLT------GHSSSVRG------VAFSPDGQTIASASDDKTVKL 247
Query: 123 WDFRAE 128
W+ +
Sbjct: 248 WNRNGQ 253
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
F D + S S D+T+K+W+ +T SS V + G TI S DK V+
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
W+ R + ++ + H SS V + G TI S DK V+
Sbjct: 330 WN-RNGQHLQTLTGH------------------SSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 123 WDFRAE 128
W+ +
Sbjct: 371 WNRNGQ 376
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRST--ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
F D + S S D+T+K+W+ +T SS V + TI S DK V+
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
W+ R+ +L +T G + G V + G TI S DK V+
Sbjct: 453 WN-------RNGQLLQTLT------GHSSSVRG------VAFSPDGQTIASASDDKTVKL 493
Query: 123 WDFRAE 128
W+ +
Sbjct: 494 WNRNGQ 499
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 12 VVSGSCDRTLKIWDLR--STETKFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFWDFRAE 68
+S S D+TL++WDLR +T +F G V + I+S +++++ W+ E
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 69 EKVRDIE 75
K E
Sbjct: 151 CKFSSAE 157
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTI---------ISGHFD 57
D ++SGS D+T+ IW L E + G L ++ + + IS +D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 58 KKVRFWDFR 66
K +R WD R
Sbjct: 98 KTLRLWDLR 106
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-------ETKFAGSSCNDLVTYDGAGTTIISG 54
C + D ++ +GS D ++ +W++ + A SS N ++ + TTI+S
Sbjct: 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSA 598
Query: 55 HFDKKVRFWD 64
D ++FW+
Sbjct: 599 GQDSNIKFWN 608
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 8 DPTKVVSGSCDRTLKIWDLRS 28
D TK+ S S D+T+KIW++ +
Sbjct: 250 DGTKIASASADKTIKIWNVAT 270
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 7 GDPTKVVSGSCDRTLKIW--DLRSTETKFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFW 63
D TK S S D+T KIW DL S + G + C + G + +G + ++R W
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 64 DFRAEEKVRDIELHGKITSLDLSKGTET 91
+ V D +L + + +GT T
Sbjct: 1155 N------VSDGQLLHSCAPISVEEGTAT 1176
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV-TYDGAGTTIISGHFDKK 59
+C F D + + + S D+ +KIWD S+ LV TYD + HF K
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWD----------SATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 60 VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 119
+ K+ L+ + T F ++ + + + S D
Sbjct: 711 SNHLLLATGSN----DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 120 VRFWDFRAEEKVRDIEL 136
+R WD R+ + + I +
Sbjct: 767 LRLWDVRSANERKSINV 783
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 7 GDPTKVVSGSCDRTLKIW--DLRSTETKFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFW 63
D TK S S D+T KIW DL S + G + C + G + +G + ++R W
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 64 DFRAEEKVRDIELHGKITSLDLSKGTET 91
+ V D +L + + +GT T
Sbjct: 1162 N------VSDGQLLHSCAPISVEEGTAT 1183
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV-TYDGAGTTIISGHFDKK 59
+C F D + + + S D+ +KIWD S+ LV TYD + HF K
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWD----------SATGKLVHTYDEHSEQVNCCHFTNK 717
Query: 60 VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 119
+ K+ L+ + T F ++ + + + S D
Sbjct: 718 SNHLLLATGSN----DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 120 VRFWDFRAEEKVRDIEL 136
+R WD R+ + + I +
Sbjct: 774 LRLWDVRSANERKSINV 790
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTET----KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 63
D T+ VSG D ++K+WDL S N + G T +S D ++ W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 64 DFRAEEKVRDIEL 76
D R + I+
Sbjct: 210 DTRKPKPATRIDF 222
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDFR 66
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 67 ---AEEKVRDIE 75
E+ D E
Sbjct: 353 KIGEEQSTEDAE 364
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHF-----------DKKV 60
++S S D T+ +WD+ +T + ++ T A ++ H D+K+
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS-GHFDKK 119
WD R + SK + T A ++ + ++++ I++ G DK
Sbjct: 257 MIWDTRNN---------------NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301
Query: 120 VRFWDFR 126
V WD R
Sbjct: 302 VALWDLR 308
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 26/122 (21%)
Query: 21 LKIWDLRSTETKFAGSSCN-------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD 73
+++W+L ET C V+ +GT +SG D ++ WD + +
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164
Query: 74 IELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 132
H ++T + S ++ F SC++ D ++ WD R +
Sbjct: 165 YRAHAAQVTCVAASPHKDSVFL--SCSE----------------DNRILLWDTRCPKPAS 206
Query: 133 DI 134
I
Sbjct: 207 QI 208
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 10 TKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAG----TTIISGHFDKKVRFWDF 65
T+ VSGS D +K+WDL + + VT A + +S D ++ WD
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 66 RAEEKVRDI 74
R + I
Sbjct: 200 RCPKPASQI 208
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDFR 66
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 67 ---AEEKVRDIE 75
E+ D E
Sbjct: 355 KIGEEQSTEDAE 366
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHF-----------DKKV 60
++S S D T+ +WD+ +T + ++ T A ++ H D+K+
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS-GHFDKK 119
WD R + SK + T A ++ + ++++ I++ G DK
Sbjct: 259 MIWDTRNN---------------NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 303
Query: 120 VRFWDFR 126
V WD R
Sbjct: 304 VALWDLR 310
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDFR 66
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 67 ---AEEKVRDIE 75
E+ D E
Sbjct: 357 KIGEEQSTEDAE 368
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHF-----------DKKV 60
++S S D T+ +WD+ +T + ++ T A ++ H D+K+
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS-GHFDKK 119
WD R + SK + T A ++ + ++++ I++ G DK
Sbjct: 261 MIWDTRNN---------------NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 305
Query: 120 VRFWDFR 126
V WD R
Sbjct: 306 VALWDLR 312
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND---LVTYDGAGTTII--SGHFDKKVRFWDFR 66
VV+GS D +K+W R S +V+ D + T I S D +R WD
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCN 99
++++ I+ G + + L+ ++++ + +
Sbjct: 111 NGKQIKSIDA-GPVDAWTLAFSPDSQYLATGTH 142
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 20/88 (22%)
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGT 109
T+++G D V+ W +R E LDL E G +V+ D + T
Sbjct: 50 TVVTGSLDDLVKVWKWRDER-------------LDLQWSLEGHQLG-----VVSVDISHT 91
Query: 110 TII--SGHFDKKVRFWDFRAEEKVRDIE 135
I S D +R WD ++++ I+
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIKSID 119
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDF 65
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV-FAE---GFKVQC 162
G I S +DK V+ W+ +++ K+ +L+ SKG Y V FA G K+ C
Sbjct: 69 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 127
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV-FAE---GFKVQC 162
G I S +DK V+ W+ +++ K+ +L+ SKG Y V FA G K+ C
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 129
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV-FAE---GFKVQC 162
G I S +DK V+ W+ +++ K+ +L+ SKG Y V FA G K+ C
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 129
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA-GTTIISGHFDKKVRF 62
+F D ++S S D +++W+ + + F + + + ++S FD V+
Sbjct: 1016 QFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKV 1075
Query: 63 WDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSS 97
W+ K +D H G + S D+S TKF+ +S
Sbjct: 1076 WNIITGNKEKDFVCHQGTVLSCDISHDA-TKFSSTS 1110
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDFR 66
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 67 ---AEEKVRDIE 75
E+ D E
Sbjct: 351 KIGEEQSAEDAE 362
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 12 VVSGSCDRTLKIWDLRSTETKFAGSSCND----LVTYDGAGTTII-SGHFDKKVRFWDFR 66
+ +GS D+T+ +WDLR+ + K + V + TI+ S D+++ WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 67 ---AEEKVRDIE 75
E+ D E
Sbjct: 351 KIGEEQSAEDAE 362
>pdb|2CQH|A Chain A, Solution Structure Of The Rna Binding Domain Of Igf-Ii
Mrna- Binding Protein 2
Length = 93
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 63 WDFRAEEKVR-DIELHGKITSLDLSKGTETKFAGSSC 98
W RA E + +ELHGKI +D S + + +G S
Sbjct: 56 WAIRAIETLSGKVELHGKIMEVDYSVSKKLRSSGPSS 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,937,050
Number of Sequences: 62578
Number of extensions: 235857
Number of successful extensions: 1068
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 299
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)