Query psy8891
Match_columns 203
No_of_seqs 131 out of 1170
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 22:05:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 4.3E-30 1.5E-34 196.9 28.2 201 2-202 18-269 (304)
2 3frx_A Guanine nucleotide-bind 100.0 3.1E-29 1.1E-33 193.4 27.0 191 2-193 70-318 (319)
3 3ow8_A WD repeat-containing pr 100.0 1.9E-29 6.7E-34 194.9 25.4 201 2-202 37-289 (321)
4 1vyh_C Platelet-activating fac 100.0 3.7E-29 1.3E-33 199.2 27.8 201 2-202 113-379 (410)
5 4gqb_B Methylosome protein 50; 100.0 4.1E-28 1.4E-32 189.3 25.0 181 2-202 87-298 (344)
6 1got_B GT-beta; complex (GTP-b 100.0 1.7E-27 5.9E-32 185.1 28.3 200 2-202 60-311 (340)
7 3frx_A Guanine nucleotide-bind 100.0 1.1E-27 3.8E-32 184.7 24.8 180 2-201 22-236 (319)
8 1erj_A Transcriptional repress 100.0 2.8E-27 9.6E-32 187.3 25.9 190 2-202 128-351 (393)
9 2pbi_B Guanine nucleotide-bind 100.0 7.5E-27 2.6E-31 182.6 27.9 202 1-202 68-325 (354)
10 4ery_A WD repeat-containing pr 100.0 5.9E-27 2E-31 179.5 26.8 182 2-202 28-233 (312)
11 3ow8_A WD repeat-containing pr 100.0 8E-27 2.7E-31 180.2 26.9 190 2-191 85-320 (321)
12 2xzm_R RACK1; ribosome, transl 100.0 1.2E-26 4E-31 180.5 27.0 193 2-194 81-342 (343)
13 1vyh_C Platelet-activating fac 100.0 3.9E-27 1.3E-31 187.6 24.8 190 2-191 155-410 (410)
14 4aow_A Guanine nucleotide-bind 100.0 4.4E-26 1.5E-30 175.8 28.0 193 2-194 43-339 (340)
15 1nr0_A Actin interacting prote 100.0 2.1E-26 7.2E-31 191.9 28.0 201 2-202 195-579 (611)
16 4ery_A WD repeat-containing pr 100.0 2.1E-26 7.1E-31 176.5 25.1 183 2-203 70-279 (312)
17 4h5i_A Guanine nucleotide-exch 100.0 7.9E-27 2.7E-31 183.3 23.2 166 2-191 138-342 (365)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-27 1.6E-31 183.0 21.5 171 2-191 21-224 (345)
19 1got_B GT-beta; complex (GTP-b 100.0 2.4E-26 8.1E-31 178.7 25.3 187 2-189 102-340 (340)
20 1nr0_A Actin interacting prote 100.0 4.5E-26 1.5E-30 189.9 28.4 199 1-200 22-278 (611)
21 2pbi_B Guanine nucleotide-bind 100.0 3.9E-26 1.3E-30 178.5 24.4 169 2-189 159-354 (354)
22 4gqb_B Methylosome protein 50; 100.0 2.3E-26 7.9E-31 179.4 22.8 170 2-195 132-334 (344)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-26 1.1E-30 178.3 23.4 199 2-200 66-343 (345)
24 4g56_B MGC81050 protein; prote 100.0 4.3E-26 1.5E-30 178.5 23.9 196 2-198 99-350 (357)
25 2xzm_R RACK1; ribosome, transl 100.0 1.3E-25 4.4E-30 174.6 25.9 178 2-199 26-252 (343)
26 2pm7_B Protein transport prote 100.0 9.1E-26 3.1E-30 172.3 24.4 190 2-191 14-284 (297)
27 3zwl_B Eukaryotic translation 100.0 6.5E-25 2.2E-29 170.5 28.7 201 2-202 37-314 (369)
28 1erj_A Transcriptional repress 100.0 1.7E-25 5.7E-30 177.2 25.5 173 1-193 68-288 (393)
29 3dm0_A Maltose-binding peripla 99.9 1.3E-25 4.4E-30 189.5 25.8 191 2-192 435-693 (694)
30 3iz6_a 40S ribosomal protein R 99.9 2.3E-26 8E-31 181.3 18.3 182 2-201 71-289 (380)
31 3vl1_A 26S proteasome regulato 99.9 3.2E-26 1.1E-30 181.7 19.2 202 2-203 61-334 (420)
32 3iz6_a 40S ribosomal protein R 99.9 5.7E-26 1.9E-30 179.1 20.2 194 1-194 112-377 (380)
33 3dm0_A Maltose-binding peripla 99.9 3.4E-25 1.1E-29 186.9 26.1 176 2-200 387-600 (694)
34 4g56_B MGC81050 protein; prote 99.9 1.1E-25 3.7E-30 176.3 21.5 197 2-199 47-308 (357)
35 2hes_X YDR267CP; beta-propelle 99.9 4.3E-25 1.5E-29 171.0 24.0 171 2-193 19-231 (330)
36 3ei3_B DNA damage-binding prot 99.9 7E-25 2.4E-29 172.3 25.4 198 2-202 78-349 (383)
37 4e54_B DNA damage-binding prot 99.9 3.3E-26 1.1E-30 183.3 17.9 180 2-201 124-336 (435)
38 3bg1_A Protein SEC13 homolog; 99.9 1.2E-25 4E-30 173.2 19.5 199 2-200 18-304 (316)
39 1gxr_A ESG1, transducin-like e 99.9 3.6E-24 1.2E-28 164.5 27.6 198 1-199 55-303 (337)
40 2hes_X YDR267CP; beta-propelle 99.9 5.8E-25 2E-29 170.2 23.1 191 2-192 63-328 (330)
41 4gga_A P55CDC, cell division c 99.9 7.8E-25 2.7E-29 174.6 24.5 199 2-200 152-403 (420)
42 3mmy_A MRNA export factor; mRN 99.9 1.9E-24 6.6E-29 167.8 25.6 182 2-202 44-314 (368)
43 3dw8_B Serine/threonine-protei 99.9 1.5E-24 5.3E-29 173.1 25.2 195 2-197 33-378 (447)
44 2w18_A PALB2, fancn, partner a 99.9 5.1E-25 1.7E-29 169.5 20.2 151 18-190 156-355 (356)
45 3gre_A Serine/threonine-protei 99.9 4.6E-25 1.6E-29 176.2 20.7 195 2-202 68-302 (437)
46 2ymu_A WD-40 repeat protein; u 99.9 5.1E-24 1.7E-28 175.4 27.3 198 2-202 308-548 (577)
47 4aez_A CDC20, WD repeat-contai 99.9 1E-23 3.4E-28 167.1 26.9 196 2-199 139-387 (401)
48 3zwl_B Eukaryotic translation 99.9 2.6E-24 8.9E-29 167.1 22.6 198 2-199 79-353 (369)
49 2oaj_A Protein SNI1; WD40 repe 99.9 2.6E-24 9E-29 186.3 24.6 190 2-198 22-248 (902)
50 3mkq_A Coatomer beta'-subunit; 99.9 5.8E-24 2E-28 181.4 25.9 201 2-202 18-269 (814)
51 2ynn_A Coatomer subunit beta'; 99.9 1.4E-23 4.6E-28 160.7 25.0 190 2-192 60-302 (304)
52 1k8k_C P40, ARP2/3 complex 41 99.9 6E-24 2E-28 165.7 23.3 179 1-202 12-243 (372)
53 4h5i_A Guanine nucleotide-exch 99.9 1.9E-24 6.4E-29 169.7 20.4 141 41-202 138-311 (365)
54 3dwl_C Actin-related protein 2 99.9 1.2E-25 4.2E-30 176.1 13.6 194 1-202 15-250 (377)
55 2ymu_A WD-40 repeat protein; u 99.9 1.8E-23 6.2E-28 172.1 26.9 198 2-202 267-507 (577)
56 3vl1_A 26S proteasome regulato 99.9 3.8E-23 1.3E-27 163.9 26.3 190 3-192 103-365 (420)
57 3v7d_B Cell division control p 99.9 2.3E-23 7.8E-28 167.5 25.2 144 4-148 127-321 (464)
58 1gxr_A ESG1, transducin-like e 99.9 3.9E-23 1.3E-27 158.7 25.4 165 2-190 146-335 (337)
59 3k26_A Polycomb protein EED; W 99.9 1.1E-23 3.7E-28 163.6 22.2 185 2-197 74-323 (366)
60 4ggc_A P55CDC, cell division c 99.9 3.9E-23 1.3E-27 157.8 24.8 197 2-202 30-283 (318)
61 3jrp_A Fusion protein of prote 99.9 2E-23 7E-28 162.7 23.7 192 2-193 16-288 (379)
62 2pm9_A Protein WEB1, protein t 99.9 1.3E-23 4.6E-28 166.1 22.9 201 2-202 17-304 (416)
63 3f3f_A Nucleoporin SEH1; struc 99.9 2E-22 6.7E-27 154.8 28.6 198 2-199 16-344 (351)
64 3sfz_A APAF-1, apoptotic pepti 99.9 2.2E-23 7.5E-28 185.3 26.5 201 2-202 620-881 (1249)
65 1yfq_A Cell cycle arrest prote 99.9 1.9E-23 6.5E-28 161.2 22.7 199 2-203 16-293 (342)
66 1pgu_A Actin interacting prote 99.9 1.1E-22 3.8E-27 168.1 27.2 200 1-202 22-293 (615)
67 1r5m_A SIR4-interacting protei 99.9 5.3E-23 1.8E-27 162.5 23.6 192 2-194 113-363 (425)
68 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-23 4.4E-28 172.1 20.7 174 2-193 212-429 (524)
69 2aq5_A Coronin-1A; WD40 repeat 99.9 9.9E-23 3.4E-27 161.3 25.0 180 2-200 86-308 (402)
70 3gre_A Serine/threonine-protei 99.9 2.3E-24 7.8E-29 172.2 15.0 200 2-202 116-369 (437)
71 4a11_B DNA excision repair pro 99.9 9.7E-23 3.3E-27 160.4 23.6 183 2-200 48-284 (408)
72 3vu4_A KMHSV2; beta-propeller 99.9 1E-22 3.5E-27 159.2 23.2 169 1-194 23-273 (355)
73 4gq1_A NUP37; propeller, trans 99.9 6.4E-24 2.2E-28 168.1 16.5 193 5-203 97-359 (393)
74 2oaj_A Protein SNI1; WD40 repe 99.9 4.4E-24 1.5E-28 184.9 16.7 183 2-202 440-674 (902)
75 1sq9_A Antiviral protein SKI8; 99.9 3.2E-22 1.1E-26 157.4 25.9 196 2-200 21-330 (397)
76 3i2n_A WD repeat-containing pr 99.9 1.3E-22 4.4E-27 157.1 22.6 192 2-193 23-292 (357)
77 4e54_B DNA damage-binding prot 99.9 2.5E-23 8.5E-28 166.6 19.0 189 1-203 168-398 (435)
78 3ei3_B DNA damage-binding prot 99.9 2E-22 6.9E-27 158.3 23.9 189 2-192 123-382 (383)
79 1l0q_A Surface layer protein; 99.9 1.9E-21 6.5E-26 152.9 29.2 201 2-202 36-285 (391)
80 1k8k_C P40, ARP2/3 complex 41 99.9 1.2E-22 4.2E-27 158.2 21.9 193 2-194 57-363 (372)
81 1r5m_A SIR4-interacting protei 99.9 1.4E-22 4.8E-27 160.1 22.4 182 1-202 49-288 (425)
82 2pm9_A Protein WEB1, protein t 99.9 9.5E-23 3.2E-27 161.2 20.8 175 1-198 117-343 (416)
83 3dwl_C Actin-related protein 2 99.9 1.6E-23 5.5E-28 164.0 15.4 152 2-153 60-267 (377)
84 3i2n_A WD repeat-containing pr 99.9 1.7E-22 5.7E-27 156.5 20.3 188 4-195 124-356 (357)
85 2j04_B YDR362CP, TAU91; beta p 99.9 1.6E-23 5.4E-28 171.6 15.2 176 7-202 171-396 (524)
86 1p22_A F-BOX/WD-repeat protein 99.9 1.7E-21 5.8E-26 155.9 26.4 171 4-202 138-335 (435)
87 4ggc_A P55CDC, cell division c 99.9 1.6E-21 5.4E-26 148.8 25.0 194 2-195 72-318 (318)
88 3k26_A Polycomb protein EED; W 99.9 7.5E-23 2.5E-27 158.8 17.7 168 2-192 120-366 (366)
89 3odt_A Protein DOA1; ubiquitin 99.9 3.6E-21 1.2E-25 146.4 26.6 194 2-200 64-304 (313)
90 3v7d_B Cell division control p 99.9 1.1E-21 3.6E-26 157.8 24.6 178 2-199 208-428 (464)
91 3odt_A Protein DOA1; ubiquitin 99.9 2.8E-21 9.4E-26 147.1 25.3 195 2-202 23-265 (313)
92 4gga_A P55CDC, cell division c 99.9 6.1E-21 2.1E-25 152.0 28.1 197 2-202 110-363 (420)
93 1sq9_A Antiviral protein SKI8; 99.9 4.2E-22 1.4E-26 156.7 21.1 184 2-194 126-397 (397)
94 4aez_A CDC20, WD repeat-contai 99.9 1.8E-21 6.2E-26 154.2 24.8 192 5-198 99-342 (401)
95 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.3E-22 1.5E-26 160.0 21.0 174 2-200 9-279 (450)
96 3jro_A Fusion protein of prote 99.9 2.4E-22 8.3E-27 171.1 20.1 193 2-194 14-287 (753)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.7E-22 1.3E-26 160.4 19.0 199 2-201 107-353 (450)
98 4a11_B DNA excision repair pro 99.9 9E-21 3.1E-25 149.1 26.5 196 2-200 104-373 (408)
99 3sfz_A APAF-1, apoptotic pepti 99.9 6.2E-21 2.1E-25 169.6 28.5 201 2-202 662-1002(1249)
100 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6.1E-21 2.1E-25 152.9 25.8 195 4-201 124-357 (445)
101 2j04_A TAU60, YPL007P, hypothe 99.9 8.7E-22 3E-26 160.3 18.8 155 1-202 89-264 (588)
102 3lrv_A PRE-mRNA-splicing facto 99.9 6.9E-22 2.4E-26 153.5 17.3 154 2-193 130-293 (343)
103 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-21 4.5E-26 151.9 17.9 153 2-200 81-252 (343)
104 1l0q_A Surface layer protein; 99.9 5.3E-20 1.8E-24 144.6 27.2 193 10-202 3-243 (391)
105 1pgu_A Actin interacting prote 99.9 1.9E-20 6.4E-25 154.7 25.2 197 2-201 211-528 (615)
106 1p22_A F-BOX/WD-repeat protein 99.9 1.2E-20 4.1E-25 150.9 22.6 169 6-202 180-384 (435)
107 2aq5_A Coronin-1A; WD40 repeat 99.9 4.4E-21 1.5E-25 151.8 19.5 155 3-199 40-214 (402)
108 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-19 3.5E-24 145.7 27.4 192 2-199 164-398 (445)
109 2xyi_A Probable histone-bindin 99.9 9.5E-21 3.2E-25 151.5 21.1 150 1-192 185-353 (430)
110 2j04_A TAU60, YPL007P, hypothe 99.9 2.3E-21 7.8E-26 157.9 16.5 156 1-200 19-222 (588)
111 4gq1_A NUP37; propeller, trans 99.9 3.5E-21 1.2E-25 152.4 17.2 165 2-190 141-387 (393)
112 3bws_A Protein LP49; two-domai 99.9 1.7E-19 5.9E-24 143.5 26.2 200 2-201 127-399 (433)
113 3mmy_A MRNA export factor; mRN 99.9 1.2E-20 4E-25 146.4 19.0 187 2-190 91-344 (368)
114 3dw8_B Serine/threonine-protei 99.9 3.1E-20 1.1E-24 148.2 20.9 187 1-191 181-445 (447)
115 3bws_A Protein LP49; two-domai 99.9 1.4E-18 4.7E-23 138.3 27.3 191 2-192 174-432 (433)
116 2xyi_A Probable histone-bindin 99.9 8.1E-20 2.8E-24 146.1 20.1 161 1-202 132-320 (430)
117 3vu4_A KMHSV2; beta-propeller 99.9 2.1E-20 7.3E-25 146.0 16.4 169 3-194 143-338 (355)
118 3mkq_A Coatomer beta'-subunit; 99.8 5.2E-19 1.8E-23 150.9 24.8 195 2-196 60-306 (814)
119 2w18_A PALB2, fancn, partner a 99.8 2E-18 7E-23 132.9 24.0 160 42-203 117-325 (356)
120 1yfq_A Cell cycle arrest prote 99.8 8.9E-19 3.1E-23 134.9 20.4 183 2-189 61-321 (342)
121 4aow_A Guanine nucleotide-bind 99.8 2.7E-18 9.2E-23 132.0 20.7 190 13-202 8-256 (340)
122 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-18 3.7E-23 140.0 16.7 156 2-200 41-230 (434)
123 2pm7_B Protein transport prote 99.8 7E-18 2.4E-22 128.5 20.5 147 39-202 12-203 (297)
124 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.6E-17 8.9E-22 131.2 23.6 174 2-201 183-395 (415)
125 3f3f_A Nucleoporin SEH1; struc 99.8 2.9E-17 9.9E-22 125.9 19.8 156 38-193 13-250 (351)
126 1nir_A Nitrite reductase; hemo 99.8 9.8E-17 3.3E-21 132.0 24.1 179 4-201 144-364 (543)
127 2oit_A Nucleoporin 214KDA; NH2 99.8 5.8E-18 2E-22 135.8 15.0 114 2-135 97-230 (434)
128 1nir_A Nitrite reductase; hemo 99.8 4.2E-16 1.4E-20 128.2 23.8 181 2-202 183-419 (543)
129 3bg1_A Protein SEC13 homolog; 99.7 2.8E-17 9.7E-22 126.2 14.4 140 1-155 107-280 (316)
130 1pby_B Quinohemoprotein amine 99.7 8.9E-17 3.1E-21 123.2 16.9 172 2-201 86-319 (337)
131 3jrp_A Fusion protein of prote 99.7 1E-15 3.4E-20 119.1 22.5 158 37-194 12-242 (379)
132 3u4y_A Uncharacterized protein 99.7 7.7E-15 2.6E-19 112.6 27.1 195 2-196 44-308 (331)
133 3vgz_A Uncharacterized protein 99.7 3.7E-14 1.3E-18 109.5 27.3 199 2-200 45-311 (353)
134 1jmx_B Amine dehydrogenase; ox 99.7 1E-14 3.5E-19 112.4 23.9 132 2-136 4-184 (349)
135 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.8E-14 6.1E-19 114.8 23.3 165 9-197 143-349 (415)
136 3jro_A Fusion protein of prote 99.7 7.7E-16 2.6E-20 131.2 15.3 152 2-153 58-270 (753)
137 2ecf_A Dipeptidyl peptidase IV 99.7 4.5E-15 1.6E-19 125.7 19.9 177 2-201 41-330 (741)
138 1pby_B Quinohemoprotein amine 99.7 1.9E-14 6.6E-19 110.1 21.7 176 2-200 38-277 (337)
139 2ojh_A Uncharacterized protein 99.7 1.3E-14 4.6E-19 108.7 19.2 176 2-198 46-264 (297)
140 1xfd_A DIP, dipeptidyl aminope 99.7 8E-16 2.7E-20 129.9 13.8 181 2-201 21-298 (723)
141 1ri6_A Putative isomerase YBHE 99.7 4.1E-14 1.4E-18 108.6 21.2 171 2-191 42-261 (343)
142 1ri6_A Putative isomerase YBHE 99.6 4.1E-14 1.4E-18 108.6 19.8 170 2-195 88-313 (343)
143 3u4y_A Uncharacterized protein 99.6 1.9E-13 6.5E-18 104.8 23.5 180 3-200 3-218 (331)
144 3hfq_A Uncharacterized protein 99.6 1.4E-13 4.8E-18 106.5 22.3 173 2-197 90-324 (347)
145 3o4h_A Acylamino-acid-releasin 99.6 8.7E-15 3E-19 121.0 14.8 174 2-201 26-235 (582)
146 1z68_A Fibroblast activation p 99.6 1.4E-14 4.7E-19 122.5 12.4 91 2-93 20-125 (719)
147 2z3z_A Dipeptidyl aminopeptida 99.6 6.5E-13 2.2E-17 112.0 22.3 192 2-194 125-437 (706)
148 1k32_A Tricorn protease; prote 99.6 2.5E-13 8.4E-18 119.5 20.0 171 2-199 249-467 (1045)
149 2ecf_A Dipeptidyl peptidase IV 99.6 1.2E-13 4E-18 117.0 16.9 176 2-200 113-375 (741)
150 2ojh_A Uncharacterized protein 99.6 3.5E-13 1.2E-17 100.9 17.4 167 13-200 16-213 (297)
151 2z3z_A Dipeptidyl aminopeptida 99.6 8.8E-14 3E-18 117.3 15.2 63 2-67 86-150 (706)
152 3vgz_A Uncharacterized protein 99.5 4.9E-12 1.7E-16 97.5 23.2 139 2-140 145-316 (353)
153 3hfq_A Uncharacterized protein 99.5 4.8E-12 1.6E-16 97.8 22.4 180 2-191 44-270 (347)
154 2oiz_A Aromatic amine dehydrog 99.5 2.7E-12 9.4E-17 100.4 21.2 196 3-200 55-344 (361)
155 4a5s_A Dipeptidyl peptidase 4 99.5 2.9E-12 9.8E-17 109.0 21.7 91 2-94 21-128 (740)
156 1k32_A Tricorn protease; prote 99.5 5.3E-12 1.8E-16 111.1 21.0 93 2-95 383-489 (1045)
157 3scy_A Hypothetical bacterial 99.5 9.3E-12 3.2E-16 96.7 19.9 161 2-199 159-346 (361)
158 3no2_A Uncharacterized protein 99.5 4.1E-11 1.4E-15 90.4 22.3 166 7-200 3-203 (276)
159 3o4h_A Acylamino-acid-releasin 99.5 5.8E-13 2E-17 110.1 12.7 156 3-197 115-279 (582)
160 3pe7_A Oligogalacturonate lyas 99.4 1.3E-10 4.5E-15 90.8 22.8 178 3-197 41-278 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.4 5.7E-11 1.9E-15 92.8 19.5 173 2-194 87-343 (365)
162 1q7f_A NHL, brain tumor CG1071 99.4 7.5E-10 2.6E-14 83.2 25.0 191 2-195 34-283 (286)
163 3pe7_A Oligogalacturonate lyas 99.4 1.3E-10 4.5E-15 90.8 20.2 178 2-197 85-334 (388)
164 1xfd_A DIP, dipeptidyl aminope 99.4 2.2E-11 7.4E-16 102.8 16.0 113 2-134 118-296 (723)
165 3scy_A Hypothetical bacterial 99.4 1.1E-09 3.8E-14 85.0 23.8 186 2-194 54-295 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.3 9.2E-11 3.1E-15 91.6 17.2 160 2-195 44-229 (365)
167 3azo_A Aminopeptidase; POP fam 99.3 3E-11 1E-15 101.1 14.8 163 2-200 134-332 (662)
168 1z68_A Fibroblast activation p 99.3 9.3E-12 3.2E-16 105.2 11.5 69 2-71 64-143 (719)
169 3fvz_A Peptidyl-glycine alpha- 99.3 2.4E-09 8.4E-14 82.4 24.2 191 2-192 28-322 (329)
170 1qks_A Cytochrome CD1 nitrite 99.3 1.4E-09 4.6E-14 89.9 23.3 178 7-200 165-381 (567)
171 3c5m_A Oligogalacturonate lyas 99.3 8.9E-11 3E-15 91.8 15.3 191 2-197 40-278 (396)
172 3c5m_A Oligogalacturonate lyas 99.3 7.2E-10 2.5E-14 86.6 19.0 169 3-197 86-334 (396)
173 1jmx_B Amine dehydrogenase; ox 99.3 4.4E-10 1.5E-14 86.2 17.0 72 2-76 96-184 (349)
174 3azo_A Aminopeptidase; POP fam 99.2 7.6E-10 2.6E-14 92.6 17.4 157 3-200 82-282 (662)
175 2bkl_A Prolyl endopeptidase; m 99.2 2.5E-09 8.7E-14 90.3 20.1 109 2-129 125-263 (695)
176 2gop_A Trilobed protease; beta 99.2 1.7E-09 5.9E-14 83.2 16.1 86 2-89 63-182 (347)
177 1rwi_B Serine/threonine-protei 99.2 3.4E-08 1.2E-12 73.2 22.2 194 2-196 28-268 (270)
178 1qks_A Cytochrome CD1 nitrite 99.2 4.4E-08 1.5E-12 81.0 24.6 179 2-200 201-436 (567)
179 3dsm_A Uncharacterized protein 99.1 1.5E-08 5E-13 78.1 19.4 175 3-200 89-309 (328)
180 1xip_A Nucleoporin NUP159; bet 99.1 5.5E-09 1.9E-13 82.2 17.0 143 2-199 42-200 (388)
181 2oiz_A Aromatic amine dehydrog 99.1 7E-09 2.4E-13 81.0 17.4 69 7-76 13-99 (361)
182 3e5z_A Putative gluconolactona 99.1 6.1E-08 2.1E-12 73.1 21.6 181 2-200 32-253 (296)
183 2mad_H Methylamine dehydrogena 99.1 2.1E-07 7.1E-12 73.0 25.0 171 3-199 130-357 (373)
184 2dg1_A DRP35, lactonase; beta 99.1 2.6E-07 8.8E-12 70.7 24.7 179 2-200 49-270 (333)
185 3c75_H MADH, methylamine dehyd 99.1 3.2E-08 1.1E-12 78.8 20.0 197 3-199 123-409 (426)
186 2xdw_A Prolyl endopeptidase; a 99.1 1E-07 3.4E-12 80.7 23.0 107 2-127 129-268 (710)
187 2gop_A Trilobed protease; beta 99.0 1.1E-07 3.8E-12 73.0 20.6 167 8-200 23-259 (347)
188 3dsm_A Uncharacterized protein 99.0 3.9E-08 1.3E-12 75.7 17.0 148 8-200 53-220 (328)
189 2dg1_A DRP35, lactonase; beta 99.0 6.8E-08 2.3E-12 73.9 16.9 172 2-192 10-213 (333)
190 2xdw_A Prolyl endopeptidase; a 99.0 3.3E-07 1.1E-11 77.5 22.4 66 2-67 175-268 (710)
191 1yr2_A Prolyl oligopeptidase; 98.9 6.2E-08 2.1E-12 82.4 17.4 107 2-128 167-304 (741)
192 2hz6_A Endoplasmic reticulum t 98.9 6.9E-09 2.3E-13 81.3 10.5 66 8-74 8-75 (369)
193 1mda_H Methylamine dehydrogena 98.9 9.5E-08 3.3E-12 74.8 16.7 65 3-67 70-158 (368)
194 3e5z_A Putative gluconolactona 98.9 1.1E-06 3.8E-11 66.1 22.2 175 2-197 73-291 (296)
195 3sjl_D Methylamine dehydrogena 98.9 1.3E-06 4.6E-11 68.5 21.4 66 2-67 141-208 (386)
196 2bkl_A Prolyl endopeptidase; m 98.9 1.8E-07 6.2E-12 79.0 17.8 173 2-195 172-400 (695)
197 2mad_H Methylamine dehydrogena 98.9 4.7E-06 1.6E-10 65.3 24.5 73 3-76 71-166 (373)
198 3g4e_A Regucalcin; six bladed 98.8 1.2E-05 4E-10 60.7 25.6 179 2-200 17-237 (297)
199 3no2_A Uncharacterized protein 98.8 4.9E-07 1.7E-11 67.9 17.4 130 48-200 5-162 (276)
200 3fvz_A Peptidyl-glycine alpha- 98.8 2.6E-06 8.8E-11 65.3 21.1 154 2-156 95-310 (329)
201 3hrp_A Uncharacterized protein 98.8 1.5E-06 5.1E-11 69.0 20.0 174 2-196 135-358 (409)
202 4a5s_A Dipeptidyl peptidase 4 98.8 3.1E-08 1E-12 84.3 10.9 116 41-197 21-146 (740)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 8.5E-06 2.9E-10 61.4 23.3 177 2-200 22-264 (314)
204 1q7f_A NHL, brain tumor CG1071 98.8 1.5E-06 5.1E-11 65.0 18.4 132 2-154 125-267 (286)
205 1xip_A Nucleoporin NUP159; bet 98.8 5.2E-07 1.8E-11 71.0 15.9 122 2-152 92-228 (388)
206 3sjl_D Methylamine dehydrogena 98.7 8.1E-07 2.8E-11 69.8 16.5 122 4-138 39-180 (386)
207 1kb0_A Quinohemoprotein alcoho 98.7 1.7E-06 5.7E-11 73.1 19.0 172 3-200 248-515 (677)
208 1yiq_A Quinohemoprotein alcoho 98.7 3.4E-06 1.1E-10 71.4 20.4 175 2-200 239-513 (689)
209 2hz6_A Endoplasmic reticulum t 98.6 2.5E-08 8.6E-13 78.1 4.5 133 47-199 8-156 (369)
210 3nol_A Glutamine cyclotransfer 98.6 1.3E-05 4.3E-10 59.4 18.7 156 4-200 49-209 (262)
211 3iuj_A Prolyl endopeptidase; h 98.6 2.7E-06 9.1E-11 71.9 16.4 108 2-129 133-270 (693)
212 1yr2_A Prolyl oligopeptidase; 98.6 4.6E-06 1.6E-10 70.9 17.8 150 2-195 272-444 (741)
213 2ghs_A AGR_C_1268P; regucalcin 98.6 8.8E-05 3E-09 56.7 23.5 123 2-126 53-209 (326)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 3.8E-05 1.3E-09 57.8 20.0 155 2-192 121-299 (314)
215 3nok_A Glutaminyl cyclase; bet 98.5 1.3E-05 4.3E-10 59.6 16.3 155 4-200 61-218 (268)
216 2z2n_A Virginiamycin B lyase; 98.5 0.00013 4.5E-09 54.2 23.7 170 2-196 19-216 (299)
217 2iwa_A Glutamine cyclotransfer 98.5 8.1E-05 2.8E-09 55.5 20.4 157 3-200 26-189 (266)
218 2z2n_A Virginiamycin B lyase; 98.5 0.00014 4.9E-09 54.0 25.0 87 2-89 61-152 (299)
219 2ece_A 462AA long hypothetical 98.4 0.00017 5.9E-09 57.5 21.5 124 3-127 143-352 (462)
220 2qe8_A Uncharacterized protein 98.4 4.5E-05 1.5E-09 58.8 18.0 184 2-197 21-283 (343)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.4 2.8E-05 9.4E-10 60.5 16.8 153 8-200 52-215 (376)
222 1kv9_A Type II quinohemoprotei 98.4 3E-05 1E-09 65.3 17.9 174 3-200 235-496 (668)
223 3mbr_X Glutamine cyclotransfer 98.4 0.00021 7.3E-09 52.4 19.9 154 4-200 27-187 (243)
224 3c75_H MADH, methylamine dehyd 98.4 7.7E-05 2.6E-09 59.4 18.5 174 7-193 82-296 (426)
225 3dr2_A Exported gluconolactona 98.4 8.5E-05 2.9E-09 56.1 18.1 64 3-66 50-115 (305)
226 1rwi_B Serine/threonine-protei 98.4 8.7E-05 3E-09 54.6 17.7 151 2-154 71-250 (270)
227 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.00011 3.8E-09 57.0 18.5 176 8-200 102-304 (376)
228 3hrp_A Uncharacterized protein 98.3 0.00026 8.8E-09 56.1 20.7 68 3-70 176-252 (409)
229 3dr2_A Exported gluconolactona 98.3 0.00026 8.8E-09 53.5 19.8 51 2-53 90-147 (305)
230 3iuj_A Prolyl endopeptidase; h 98.3 0.00016 5.6E-09 61.0 19.8 66 2-68 179-269 (693)
231 2ece_A 462AA long hypothetical 98.3 0.00021 7.2E-09 57.0 18.6 115 7-137 93-247 (462)
232 1flg_A Protein (quinoprotein e 98.2 0.00014 4.8E-09 60.3 17.3 158 19-200 291-524 (582)
233 2qe8_A Uncharacterized protein 98.2 0.00045 1.5E-08 53.1 19.1 73 2-74 71-161 (343)
234 3g4e_A Regucalcin; six bladed 98.2 0.00097 3.3E-08 50.1 21.9 142 2-145 58-248 (297)
235 2qc5_A Streptogramin B lactona 98.2 0.001 3.5E-08 49.3 23.2 67 2-70 24-94 (300)
236 3nol_A Glutamine cyclotransfer 98.1 6.1E-05 2.1E-09 55.8 11.9 113 42-200 48-163 (262)
237 2ad6_A Methanol dehydrogenase 98.0 0.0013 4.3E-08 54.4 19.4 157 20-200 273-502 (571)
238 3nok_A Glutaminyl cyclase; bet 98.0 7.6E-05 2.6E-09 55.4 10.7 112 42-200 60-172 (268)
239 2qc5_A Streptogramin B lactona 98.0 0.0023 7.9E-08 47.4 24.4 87 2-90 66-158 (300)
240 2iwa_A Glutamine cyclotransfer 98.0 0.00022 7.5E-09 53.1 12.5 115 41-200 25-143 (266)
241 3mbr_X Glutamine cyclotransfer 97.9 0.00033 1.1E-08 51.3 12.9 113 42-200 26-141 (243)
242 1kb0_A Quinohemoprotein alcoho 97.9 0.00011 3.9E-09 61.9 11.5 62 58-138 457-518 (677)
243 1w6s_A Methanol dehydrogenase 97.9 0.0033 1.1E-07 52.3 19.3 72 4-75 247-350 (599)
244 1yiq_A Quinohemoprotein alcoho 97.9 0.00013 4.6E-09 61.6 11.0 63 57-138 454-516 (689)
245 1mda_H Methylamine dehydrogena 97.8 0.00085 2.9E-08 52.4 14.3 120 6-145 219-364 (368)
246 1fwx_A Nitrous oxide reductase 97.8 0.00078 2.7E-08 55.5 14.1 190 8-201 100-380 (595)
247 1npe_A Nidogen, entactin; glyc 97.6 0.011 3.9E-07 43.3 23.7 90 2-91 40-135 (267)
248 1kv9_A Type II quinohemoprotei 97.6 0.0054 1.8E-07 51.7 16.6 175 8-199 116-340 (668)
249 1fwx_A Nitrous oxide reductase 97.6 0.0078 2.7E-07 49.7 16.9 116 3-127 200-361 (595)
250 2ghs_A AGR_C_1268P; regucalcin 97.5 0.019 6.4E-07 43.6 19.1 120 2-137 138-269 (326)
251 2ad6_A Methanol dehydrogenase 97.3 0.0025 8.5E-08 52.7 11.6 63 57-138 443-505 (571)
252 1flg_A Protein (quinoprotein e 97.3 0.0025 8.5E-08 52.8 10.9 64 57-139 465-528 (582)
253 1k3i_A Galactose oxidase precu 97.2 0.043 1.5E-06 46.0 17.9 67 3-69 248-325 (656)
254 2p9w_A MAL S 1 allergenic prot 97.1 0.054 1.8E-06 41.5 18.8 74 2-75 17-120 (334)
255 3hxj_A Pyrrolo-quinoline quino 96.9 0.076 2.6E-06 39.7 15.2 28 105-134 223-250 (330)
256 2fp8_A Strictosidine synthase; 96.9 0.089 3.1E-06 39.6 18.0 68 2-69 23-112 (322)
257 1w6s_A Methanol dehydrogenase 96.8 0.19 6.4E-06 41.8 19.2 113 9-136 62-200 (599)
258 2xe4_A Oligopeptidase B; hydro 96.7 0.013 4.4E-07 50.0 10.6 68 2-69 178-258 (751)
259 3amr_A 3-phytase; beta-propell 96.4 0.24 8.2E-06 38.3 16.8 127 8-146 39-188 (355)
260 1k3i_A Galactose oxidase precu 95.9 0.31 1.1E-05 40.8 14.5 111 2-129 190-325 (656)
261 2fp8_A Strictosidine synthase; 95.8 0.43 1.5E-05 35.8 19.3 106 3-127 85-216 (322)
262 2xe4_A Oligopeptidase B; hydro 95.7 0.29 9.8E-06 41.8 13.6 69 41-129 178-258 (751)
263 1npe_A Nidogen, entactin; glyc 95.7 0.39 1.3E-05 34.9 16.8 114 2-136 126-247 (267)
264 3tc9_A Hypothetical hydrolase; 95.6 0.62 2.1E-05 36.9 16.1 108 2-129 141-259 (430)
265 2be1_A Serine/threonine-protei 95.4 0.081 2.8E-06 40.7 8.3 121 49-200 11-138 (339)
266 3hxj_A Pyrrolo-quinoline quino 95.4 0.47 1.6E-05 35.3 12.6 60 110-194 267-326 (330)
267 2xzh_A Clathrin heavy chain 1; 95.3 0.71 2.4E-05 35.5 15.9 99 17-137 47-146 (365)
268 2be1_A Serine/threonine-protei 94.7 1.1 3.8E-05 34.4 14.5 118 10-137 11-140 (339)
269 1bpo_A Protein (clathrin); cla 94.5 1.5 5.2E-05 35.1 14.0 99 17-137 46-145 (494)
270 3amr_A 3-phytase; beta-propell 93.8 1.8 6.2E-05 33.4 18.9 90 18-126 98-209 (355)
271 1n7d_A LDL receptor, low-densi 93.6 2.3 7.9E-05 36.0 13.8 68 2-69 410-486 (699)
272 2p4o_A Hypothetical protein; p 93.1 2 6.8E-05 31.9 22.8 69 2-70 36-107 (306)
273 4hw6_A Hypothetical protein, I 91.5 4.3 0.00015 32.1 16.5 130 41-191 143-303 (433)
274 3pbp_A Nucleoporin NUP82; beta 91.1 4.9 0.00017 32.0 17.6 103 7-127 30-158 (452)
275 3pbp_A Nucleoporin NUP82; beta 89.3 7.1 0.00024 31.1 12.7 64 3-67 71-158 (452)
276 4gq2_M Nucleoporin NUP120; bet 89.1 2.6 8.7E-05 37.1 9.6 35 102-136 241-275 (950)
277 3qqz_A Putative uncharacterize 89.1 5.2 0.00018 29.3 19.4 66 3-69 32-102 (255)
278 3sov_A LRP-6, low-density lipo 88.4 6.6 0.00022 29.5 21.7 67 2-68 39-111 (318)
279 4fhn_B Nucleoporin NUP120; pro 87.6 2 6.7E-05 38.6 8.0 34 103-136 244-277 (1139)
280 3v65_B Low-density lipoprotein 87.4 8.6 0.00029 29.7 21.4 67 2-68 120-191 (386)
281 3kya_A Putative phosphatase; s 86.7 11 0.00039 30.4 14.5 56 3-58 144-214 (496)
282 3tc9_A Hypothetical hydrolase; 86.5 10 0.00035 29.8 21.4 89 2-91 183-283 (430)
283 4gq2_M Nucleoporin NUP120; bet 86.0 1.4 4.7E-05 38.8 6.1 34 166-199 240-273 (950)
284 2p4o_A Hypothetical protein; p 85.7 8.8 0.0003 28.3 16.4 70 41-130 36-107 (306)
285 1xi4_A Clathrin heavy chain; a 85.4 4.1 0.00014 37.7 8.6 97 17-135 46-143 (1630)
286 3f7f_A Nucleoporin NUP120; nuc 85.2 1.4 4.6E-05 37.5 5.4 30 170-199 228-257 (729)
287 4hw6_A Hypothetical protein, I 83.1 15 0.00052 28.9 13.6 64 3-66 233-303 (433)
288 3f7f_A Nucleoporin NUP120; nuc 82.5 2.3 7.8E-05 36.1 5.6 34 103-136 226-259 (729)
289 4fhn_B Nucleoporin NUP120; pro 82.4 1.6 5.6E-05 39.1 5.1 32 168-199 244-275 (1139)
290 3p5b_L Low density lipoprotein 81.8 16 0.00056 28.3 23.7 87 2-88 116-212 (400)
291 3qqz_A Putative uncharacterize 80.4 15 0.0005 26.9 17.3 140 40-200 30-211 (255)
292 3v64_C Agrin; beta propeller, 78.5 20 0.00067 27.2 23.2 86 2-87 77-168 (349)
293 1ijq_A LDL receptor, low-densi 78.3 18 0.00063 26.8 24.8 86 2-87 34-129 (316)
294 3sbq_A Nitrous-oxide reductase 73.6 32 0.0011 28.6 9.6 66 2-67 327-408 (638)
295 1n7d_A LDL receptor, low-densi 73.0 27 0.00091 29.5 9.5 65 3-67 458-528 (699)
296 3m0c_C LDL receptor, low-densi 73.0 45 0.0015 28.7 24.0 87 2-88 428-524 (791)
297 3sre_A PON1, serum paraoxonase 72.5 29 0.00099 26.6 8.9 28 40-67 224-252 (355)
298 3ei3_A DNA damage-binding prot 71.4 59 0.002 29.4 18.8 74 49-136 524-600 (1158)
299 3ii7_A Kelch-like protein 7; p 69.0 31 0.001 25.1 13.6 62 7-69 54-129 (306)
300 2uvk_A YJHT; unknown function, 67.6 36 0.0012 25.4 13.2 31 171-201 315-351 (357)
301 2xzh_A Clathrin heavy chain 1; 62.7 51 0.0017 25.4 19.4 84 5-90 74-164 (365)
302 3v9f_A Two-component system se 57.8 86 0.0029 26.5 17.9 59 11-70 375-439 (781)
303 2vpj_A Kelch-like protein 12; 56.2 54 0.0018 23.7 16.5 62 7-69 61-139 (301)
304 1tl2_A L10, protein (tachylect 52.5 63 0.0021 23.3 7.2 60 2-65 45-114 (236)
305 2xn4_A Kelch-like protein 2; s 50.0 70 0.0024 23.1 15.3 61 8-69 108-184 (302)
306 3sre_A PON1, serum paraoxonase 48.3 40 0.0014 25.9 5.7 56 2-57 225-287 (355)
307 2ism_A Putative oxidoreductase 48.0 87 0.003 23.6 13.4 23 2-25 35-57 (352)
308 3v9f_A Two-component system se 45.7 1.4E+02 0.0047 25.3 16.7 61 7-70 416-481 (781)
309 3kya_A Putative phosphatase; s 45.5 1.2E+02 0.0041 24.5 20.1 60 6-66 201-277 (496)
310 4a2l_A BT_4663, two-component 45.0 1.4E+02 0.0048 25.2 24.6 63 6-70 414-483 (795)
311 3s94_A LRP-6, low-density lipo 44.5 1.3E+02 0.0046 24.8 18.8 68 2-69 44-117 (619)
312 3a9g_A Putative uncharacterize 42.9 1.1E+02 0.0036 23.2 14.6 24 2-26 33-56 (354)
313 2xbg_A YCF48-like protein; pho 37.2 1.2E+02 0.0043 22.3 16.6 62 2-64 167-231 (327)
314 4a0p_A LRP6, LRP-6, low-densit 34.2 2E+02 0.0069 23.8 21.7 65 3-67 85-155 (628)
315 4a2l_A BT_4663, two-component 30.7 2.4E+02 0.0084 23.8 25.3 64 6-70 365-439 (795)
316 1zgk_A Kelch-like ECH-associat 28.8 1.7E+02 0.0056 21.2 14.8 60 8-69 121-195 (308)
317 1xi4_A Clathrin heavy chain; a 27.2 4.1E+02 0.014 25.2 13.7 60 6-67 74-134 (1630)
318 1ukf_A Avirulence protein AVRP 26.3 47 0.0016 22.9 2.6 23 176-198 134-156 (188)
319 2hc5_A ORF 99, hypothetical pr 25.2 54 0.0019 20.7 2.6 17 184-200 70-86 (117)
320 3v65_B Low-density lipoprotein 23.7 2.4E+02 0.0083 21.4 21.8 52 18-69 95-149 (386)
321 4asc_A Kelch repeat and BTB do 23.7 2.1E+02 0.0072 20.7 14.1 61 8-69 98-176 (315)
322 1bpo_A Protein (clathrin); cla 23.6 2.9E+02 0.01 22.3 19.8 61 5-67 73-134 (494)
323 2g8s_A Glucose/sorbosone dehyd 23.1 2.4E+02 0.0082 21.1 13.5 26 2-27 22-47 (353)
324 3ei3_A DNA damage-binding prot 22.2 4.4E+02 0.015 23.9 15.7 25 173-197 571-596 (1158)
325 3sov_A LRP-6, low-density lipo 21.7 2.5E+02 0.0084 20.7 17.8 91 3-93 84-181 (318)
326 3v64_C Agrin; beta propeller, 20.3 2.7E+02 0.0093 20.7 23.2 52 18-69 52-106 (349)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-30 Score=196.91 Aligned_cols=201 Identities=20% Similarity=0.283 Sum_probs=155.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|++.+|+||+.|++|++||+.+++... . +......+.+.+++++|++|+.|++|++||+++++.+..+..|
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 97 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC
Confidence 68999999999999999999999998865432 2 2233455778899999999999999999999999988888766
Q ss_pred CeEEEEEecCCCceEEEecCCce------------------------EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSCND------------------------LVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR 132 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~ 132 (203)
+.|.+++++|++..++.++.... .+.|+| ++..|++++.|++|++||++++.+..
T Consensus 98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~ 177 (304)
T 2ynn_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 56999999999888877654432 246777 57899999999999999998877655
Q ss_pred EEecc--ceEEEEEecC--CcEEEEeec-C-----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 133 DIELH--GKITSLDLSK--GKYYFVFAE-G-----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 133 ~~~~~--~~v~~~~~~~--~~~~~~~~~-~-----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
.+... ..+..+.+.+ +..+++... . .. +...+..+.|+|++.+|++|+.|++|++||.
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 55432 3466666543 322332221 1 00 1124556789999999999999999999999
Q ss_pred CCceeeeeeccC
Q psy8891 191 NTEQVEAVLKDM 202 (203)
Q Consensus 191 ~~~~~~~~~~~~ 202 (203)
++++++++++.|
T Consensus 258 ~~~~~~~~~~~~ 269 (304)
T 2ynn_A 258 STYKVEKTLNVG 269 (304)
T ss_dssp TTCCEEEEECCS
T ss_pred CCCceeeeccCC
Confidence 999999998765
No 2
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=3.1e-29 Score=193.44 Aligned_cols=191 Identities=22% Similarity=0.355 Sum_probs=147.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~ 77 (203)
+++|+|++++|+|||.|++||+||+.+++.. +. +......+.++|++++|+||+.|++|++||++.. ++..+.. .
T Consensus 70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~ 148 (319)
T 3frx_A 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHN 148 (319)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccC
Confidence 5789999999999999999999999987653 22 2233455778999999999999999999999754 4444443 3
Q ss_pred CeEEEEEecCCCc------eEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891 78 GKITSLDLSKGTE------TKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 78 ~~v~~~~~~~~~~------~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~ 128 (203)
..|..+.+.|... .++.++.. ...+.|+|+|++|++++.|++|++||++++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 5688888877432 34433322 123678999999999999999999999999
Q ss_pred ceEEEEeccceEEEEEecCCcEEEEeecCeeE-------------------------EeeeEEEEEEcCCCEEEEecCCC
Q psy8891 129 EKVRDIELHGKITSLDLSKGKYYFVFAEGFKV-------------------------QCDFTRAVFVVDDDYVAVGSIDG 183 (203)
Q Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~s~s~d~ 183 (203)
+++..+..+..+.++.++++...++......+ ...+..++|+|++++|++|+.|+
T Consensus 229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 229 KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp EEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 99999888888999999988766554322110 11245678999999999999999
Q ss_pred cEEEEeCCCc
Q psy8891 184 NIYVWDCNTE 193 (203)
Q Consensus 184 ~v~~wd~~~~ 193 (203)
+|++||+.++
T Consensus 309 ~i~vWd~~t~ 318 (319)
T 3frx_A 309 VIRVWQVMTA 318 (319)
T ss_dssp CEEEEEEEEC
T ss_pred eEEEEEEeec
Confidence 9999998764
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=194.89 Aligned_cols=201 Identities=22% Similarity=0.340 Sum_probs=158.0
Q ss_pred ceEEcCC----CCEEEEEeCCCcEEEEeCCCCCeE----EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGD----PTKVVSGSCDRTLKIWDLRSTETK----FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~----~~~l~t~s~D~~v~lwdl~~~~~~----~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~ 72 (203)
+++|+|+ +..|+|||.|++||+||+...+.. +.++ .....+.+.+++..++|++.|++|++||+++++.+.
T Consensus 37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~ 116 (321)
T 3ow8_A 37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116 (321)
T ss_dssp EEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE
Confidence 6888874 678999999999999999765432 2222 224456788999999999999999999999999888
Q ss_pred eeeeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891 73 DIELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~ 128 (203)
.+..+ ..+..++++|++..++.+..... .+.|+|+|++|++++.|++|++||++++
T Consensus 117 ~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~ 196 (321)
T 3ow8_A 117 SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196 (321)
T ss_dssp EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 77654 46788999999888877654322 3578999999999999999999999999
Q ss_pred ceEEEEecc-ceEEEEEecCCcEEEEeecC--e-e---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 129 EKVRDIELH-GKITSLDLSKGKYYFVFAEG--F-K---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 129 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~-~---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
+++..+..+ ..+.++.++++..+++.... . . ....+..+.|+|++.+|++|+.|++|++||
T Consensus 197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 988888765 45888899887665554321 0 0 011356788999999999999999999999
Q ss_pred CCCceeeeeeccC
Q psy8891 190 CNTEQVEAVLKDM 202 (203)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (203)
+.++++++++.+|
T Consensus 277 ~~~~~~~~~~~~h 289 (321)
T 3ow8_A 277 VGTRTCVHTFFDH 289 (321)
T ss_dssp TTTTEEEEEECCC
T ss_pred CCCCEEEEEEcCC
Confidence 9999999998765
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=3.7e-29 Score=199.24 Aligned_cols=201 Identities=19% Similarity=0.333 Sum_probs=159.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|++..|+|||.|++|++||+.+++.. +.+ ......+.|+|++++|+||+.|++|++||++.++++..+..|
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 192 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD 192 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Confidence 7899999999999999999999999876532 222 233455788999999999999999999999999888887765
Q ss_pred CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~ 134 (203)
..|.+++++|++..++.++....+ +.+++++.+|++++.|++|++||++++++...+
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 579999999998888776655433 356788999999999999999999999888777
Q ss_pred ecc-ceEEEEEecCC--------------------cEEEEeec-C-----------ee------EEeeeEEEEEEcCCCE
Q psy8891 135 ELH-GKITSLDLSKG--------------------KYYFVFAE-G-----------FK------VQCDFTRAVFVVDDDY 175 (203)
Q Consensus 135 ~~~-~~v~~~~~~~~--------------------~~~~~~~~-~-----------~~------~~~~~~~~~~~~~~~~ 175 (203)
..+ ..+.++.+++. ..+++... . .. +...+..+.|+|++++
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSC
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCE
Confidence 655 34777777663 11222211 1 10 0113456789999999
Q ss_pred EEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 176 VAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 176 l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
|++|+.|++|++||+.++++++++.+|
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 999999999999999999999999876
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=4.1e-28 Score=189.27 Aligned_cols=181 Identities=22% Similarity=0.317 Sum_probs=126.8
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
+++|+||+ .|++|+.||+|++||+.+++.. . .+......++|+|++++|+||+.|++|++||+++++.+..+
T Consensus 87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 87 DLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 68899984 7889999999999999876531 1 12233456789999999999999999999999999998888
Q ss_pred eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCC-c
Q psy8891 75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKG-K 149 (203)
Q Consensus 75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~-~ 149 (203)
..| +.|.++++++++. .++++++.|++|++||++++++...+... ..+.++.+++. .
T Consensus 166 ~~h~~~V~~~~~~~~~~------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKD------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp CCCSSCEEEEEECSSCT------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred cCcCCceEEEEecCCCC------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC
Confidence 765 5688887776543 35666667777777777666665554322 22555555542 2
Q ss_pred EEEEeec--Ce----------------eEEeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 150 YYFVFAE--GF----------------KVQCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 150 ~~~~~~~--~~----------------~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
.+++... +. .+...+..++|+|++ .+|++|+.|++|++||++++++++ +++|
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H 298 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH 298 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC
Confidence 2222211 10 001134567788987 579999999999999999998765 4454
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.7e-27 Score=185.08 Aligned_cols=200 Identities=20% Similarity=0.291 Sum_probs=154.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce----EEEee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE----KVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~----~~~~~ 74 (203)
+++|+||+++|+|||.|++|++||+.+.+... . +......+.++|++++|++|+.|+.|++||+...+ ....+
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 139 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe
Confidence 68999999999999999999999998766432 2 22234457889999999999999999999997653 33444
Q ss_pred eeC-CeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891 75 ELH-GKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 130 (203)
Q Consensus 75 ~~~-~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~ 130 (203)
..| +.|.++.+.+++. +++++.. ...+.|+|+++++++++.|++|++||++++++
T Consensus 140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218 (340)
T ss_dssp ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence 444 5677777776554 3333222 12357889999999999999999999999998
Q ss_pred EEEEecc-ceEEEEEecCCcEEEEeecC------------eeE--------EeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 131 VRDIELH-GKITSLDLSKGKYYFVFAEG------------FKV--------QCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 131 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
...+..+ ..|.++.++++...++.... ... ...+..+.|+|++++|++|+.|++|++||
T Consensus 219 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 8888765 45899999887655554321 000 11356788999999999999999999999
Q ss_pred CCCceeeeeeccC
Q psy8891 190 CNTEQVEAVLKDM 202 (203)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (203)
..+++.+.++++|
T Consensus 299 ~~~~~~~~~~~~h 311 (340)
T 1got_B 299 ALKADRAGVLAGH 311 (340)
T ss_dssp TTTCCEEEEEECC
T ss_pred cccCcEeeEeecC
Confidence 9999999998876
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=1.1e-27 Score=184.74 Aligned_cols=180 Identities=22% Similarity=0.391 Sum_probs=124.2
Q ss_pred ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCe-------EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTET-------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~-------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~ 72 (203)
+++|+|++ .+|+|||.|++|++||+..... .+.+ ......+.+++++++|+||+.|++|++||+++++.+.
T Consensus 22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~ 101 (319)
T 3frx_A 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101 (319)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE
Confidence 67899865 8999999999999999864221 1222 2334557889999999999999999999999999888
Q ss_pred eeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcE
Q psy8891 73 DIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKY 150 (203)
Q Consensus 73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~ 150 (203)
.+..| +.|.++++++++ ..|++++.|++|++||++. +++..+..+ ..+..+.+.+...
T Consensus 102 ~~~~h~~~v~~~~~~~~~-------------------~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 102 RFVGHKSDVMSVDIDKKA-------------------SMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEECCSSCEEEEEECTTS-------------------CEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred EEccCCCcEEEEEEcCCC-------------------CEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence 77765 567777766644 4666666666666666652 333333332 2344444433211
Q ss_pred ------EEEeec-C----------e-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891 151 ------YFVFAE-G----------F-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 151 ------~~~~~~-~----------~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
.++... . . .+...+..+.++|++++|++|+.|++|++||+.+++++.+++.
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 111110 0 0 0112355677889999999999999999999999999988864
No 8
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=2.8e-27 Score=187.32 Aligned_cols=190 Identities=22% Similarity=0.401 Sum_probs=136.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
+++|+|++++|++|+.|++|++||+.+.+... .+ ......+.|.|+++.|++|+.|++|++||+++++....+..+.
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 68999999999999999999999998866432 22 2234557889999999999999999999999999888888888
Q ss_pred eEEEEEecC-CCceEEEecCCc------------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891 79 KITSLDLSK-GTETKFAGSSCN------------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRA 127 (203)
Q Consensus 79 ~v~~~~~~~-~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~ 127 (203)
.+..++++| ++..+++++... ..+.|+|+|+.|++++.|++|++||+++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 899999988 565555443221 2256778888899999999999999876
Q ss_pred CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
............ ....... . .+...+..+.+++++.+|++|+.|++|++||..+++++.++++|
T Consensus 288 ~~~~~~~~~~~~--------~~~~~~~-~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 288 ANNKSDSKTPNS--------GTCEVTY-I--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp ---------------------CEEEEE-E--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCcccccCCCC--------CcceEEE-e--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 443211110000 0000000 0 00112446678899999999999999999999999999999876
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=7.5e-27 Score=182.62 Aligned_cols=202 Identities=21% Similarity=0.351 Sum_probs=155.5
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc------eEE
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE------EKV 71 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~------~~~ 71 (203)
+|++|+|++.+|+|||.|++|++||..+.+... . .......+.++|+++.|++|+.|+.+++|++... ...
T Consensus 68 ~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 378999999999999999999999998765432 1 2223456789999999999999999999998643 123
Q ss_pred EeeeeC-CeEEEEEecCCCceEEEecCCceE-----------------------EEEcC--CCCEEEEeeCCCeEEEEEC
Q psy8891 72 RDIELH-GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDG--AGTTIISGHFDKKVRFWDF 125 (203)
Q Consensus 72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~l~s~s~d~~i~iWd~ 125 (203)
..+..| +.|.++.+++++..+++++....+ +.|.| +|..|++++.|++|++||+
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~ 227 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 334433 568999999988777766554433 23444 4789999999999999999
Q ss_pred CCCceEEEEecc-ceEEEEEecCCcEEEEeecC--e----------eE--------EeeeEEEEEEcCCCEEEEecCCCc
Q psy8891 126 RAEEKVRDIELH-GKITSLDLSKGKYYFVFAEG--F----------KV--------QCDFTRAVFVVDDDYVAVGSIDGN 184 (203)
Q Consensus 126 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~----------~~--------~~~~~~~~~~~~~~~l~s~s~d~~ 184 (203)
++++++..+..+ ..|.++.++++...++.... . .. ......+.|+|++.+|++|+.|++
T Consensus 228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307 (354)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence 999998888765 46899999877655544321 0 00 113456789999999999999999
Q ss_pred EEEEeCCCceeeeeeccC
Q psy8891 185 IYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 185 v~~wd~~~~~~~~~~~~~ 202 (203)
|++||+.+++.+.++.+|
T Consensus 308 i~vwd~~~~~~~~~l~~h 325 (354)
T 2pbi_B 308 INVWDVLKGSRVSILFGH 325 (354)
T ss_dssp EEEEETTTCSEEEEECCC
T ss_pred EEEEECCCCceEEEEECC
Confidence 999999999999988776
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=5.9e-27 Score=179.53 Aligned_cols=182 Identities=18% Similarity=0.382 Sum_probs=136.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|++++|++|+.|++|++||+.+++... . +......+.|+|++++|++|+.|+.|++||+++++.+..+..|
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 107 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC
Confidence 68999999999999999999999998766432 2 2223445788999999999999999999999999888777655
Q ss_pred CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeec
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAE 156 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~ 156 (203)
..|.+++++| ++++|++++.|++|++||+++++++..+..+ ..+.++.++++...++...
T Consensus 108 ~~v~~~~~~~-------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 108 NYVFCCNFNP-------------------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp SCEEEEEECS-------------------SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEcC-------------------CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 4466665554 5567777788888888888777777666554 3577777766544443221
Q ss_pred --Ce----------eE-------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 157 --GF----------KV-------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 157 --~~----------~~-------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
+. .. ...+..+.++|++++|++++.|+.|++||+.+++++..+++|
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 10 00 112345678899999999999999999999999999988765
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=8e-27 Score=180.22 Aligned_cols=190 Identities=14% Similarity=0.177 Sum_probs=151.6
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|++++..++|||.|++|++||+.+++... . +......+.++|++++|++|+.|+.|++||++.++....+..+
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 67899999999999999999999998866432 1 2222344788999999999999999999999999887777655
Q ss_pred CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~ 134 (203)
..+.+++++|++..++.+...+. .+.|+|++++|++++.|++|++||+++++....+
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 45999999999888776654332 3578899999999999999999999999888887
Q ss_pred ecc-ceEEEEEecCCcEEEEeecC-e-----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891 135 ELH-GKITSLDLSKGKYYFVFAEG-F-----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 135 ~~~-~~v~~~~~~~~~~~~~~~~~-~-----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~ 191 (203)
..+ ..|.++.++++...++.... . . ....+..+.|+|++++|++++.|++|++||+.
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 765 45889999887655544321 0 0 11245678899999999999999999999963
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=1.2e-26 Score=180.54 Aligned_cols=193 Identities=19% Similarity=0.245 Sum_probs=142.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee---e
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI---E 75 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~---~ 75 (203)
+++|+|++.+|+|||.|++|++||+++++.. +. +......+.++|++++|++++.|++|++||+......... .
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 160 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccC
Confidence 6789999999999999999999999987653 22 2233455789999999999999999999999854332222 2
Q ss_pred eCCeEEEEEecCCC----------ceEEEecCC----------------------ceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891 76 LHGKITSLDLSKGT----------ETKFAGSSC----------------------NDLVTYDGAGTTIISGHFDKKVRFW 123 (203)
Q Consensus 76 ~~~~v~~~~~~~~~----------~~~~~~~~~----------------------~~~~~~~~~~~~l~s~s~d~~i~iW 123 (203)
....|.+++++|+. ..++.++.. ...+.|+|+|++|++++.|++|++|
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 23568888888865 334333322 2346789999999999999999999
Q ss_pred ECC-CCceEEEEeccceEEEEEecCCcEEEEeecCe--e----------------------------EEeeeEEEEEEcC
Q psy8891 124 DFR-AEEKVRDIELHGKITSLDLSKGKYYFVFAEGF--K----------------------------VQCDFTRAVFVVD 172 (203)
Q Consensus 124 d~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~----------------------------~~~~~~~~~~~~~ 172 (203)
|++ ...+...+.....+.++.++++..++...... . ....+..++|+|+
T Consensus 241 d~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp ESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred ECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 994 44455555555678888888876555432210 0 0112456789999
Q ss_pred CCEEEEecCCCcEEEEeCCCce
Q psy8891 173 DDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 173 ~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
+++|++|+.|++|++|++++++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999987654
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=3.9e-27 Score=187.56 Aligned_cols=190 Identities=20% Similarity=0.322 Sum_probs=150.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|+++.|+|||.|++|++||+.+.+.... +......+.+.|++++|+||+.|++|++||++++.++.++..|
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~ 234 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence 689999999999999999999999988665432 2223455788999999999999999999999999988888766
Q ss_pred CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCC--------------------CCEEEEe
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGA--------------------GTTIISG 114 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~--------------------~~~l~s~ 114 (203)
..|..+.+++++..++.++..+.+ +.|+|+ |.+|+++
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 469999999998888777655433 345564 6789999
Q ss_pred eCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeec-Cee-----------------EEeeeEEEEEEcCCCE
Q psy8891 115 HFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAE-GFK-----------------VQCDFTRAVFVVDDDY 175 (203)
Q Consensus 115 s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~ 175 (203)
+.|++|++||+++++++..+..+. .|.++.++++..+++... ... +...++.+.|+|++.+
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 999999999999999988887664 588888887654444322 100 1124567889999999
Q ss_pred EEEecCCCcEEEEeCC
Q psy8891 176 VAVGSIDGNIYVWDCN 191 (203)
Q Consensus 176 l~s~s~d~~v~~wd~~ 191 (203)
|++|+.|++|++|+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999963
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=4.4e-26 Score=175.76 Aligned_cols=193 Identities=21% Similarity=0.336 Sum_probs=139.2
Q ss_pred ceEEcCC-CCEEEEEeCCCcEEEEeCCCCCe-----E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTET-----K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~-----~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~ 72 (203)
|++|+|+ +++|+|||.|++||+||+...+. . +.+ ......+.++|++++|++++.|+.|++|+........
T Consensus 43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~ 122 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122 (340)
T ss_dssp EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceee
Confidence 6899998 57999999999999999976432 1 112 2234557889999999999999999999987665433
Q ss_pred eeee--------------------------------------------CCeEEEEEecCCCce--EEEecCC--------
Q psy8891 73 DIEL--------------------------------------------HGKITSLDLSKGTET--KFAGSSC-------- 98 (203)
Q Consensus 73 ~~~~--------------------------------------------~~~v~~~~~~~~~~~--~~~~~~~-------- 98 (203)
.... ...+..++++++... ++.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence 2211 123445555543321 2222211
Q ss_pred ---------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee----
Q psy8891 99 ---------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK---- 159 (203)
Q Consensus 99 ---------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---- 159 (203)
...+.|+|++++|++++.|++|++||+++.+++..+..+..+..+.++++..++.......
T Consensus 203 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw 282 (340)
T 4aow_A 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEE
Confidence 1235789999999999999999999999999998888888898888887765554332110
Q ss_pred ----------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 160 ----------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 160 ----------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
....++.++|+|++++|++|+.|++|++||+.+|.
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 11235678899999999999999999999999885
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=2.1e-26 Score=191.85 Aligned_cols=201 Identities=20% Similarity=0.280 Sum_probs=148.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe----------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA----------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~----------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~ 71 (203)
+++|+||+++|+|||.|++|++||+.+++.... +......+.|+|++++|+|++.|++|++||+++++.+
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 689999999999999999999999987664321 1222445789999999999999999999999987665
Q ss_pred Eeee-------------------------------------------e-CCeEEEEEecCCCceEEEecCC---------
Q psy8891 72 RDIE-------------------------------------------L-HGKITSLDLSKGTETKFAGSSC--------- 98 (203)
Q Consensus 72 ~~~~-------------------------------------------~-~~~v~~~~~~~~~~~~~~~~~~--------- 98 (203)
.++. . ...|.+++++|++..++.++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 4332 1 2458888888877665543211
Q ss_pred --------------------------------------------------------------------------------
Q psy8891 99 -------------------------------------------------------------------------------- 98 (203)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (203)
T Consensus 355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp TCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred CCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence
Q ss_pred ----------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEeccceEEEEEecCCcEEEEeecC---
Q psy8891 99 ----------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDLSKGKYYFVFAEG--- 157 (203)
Q Consensus 99 ----------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 157 (203)
...+.|+|+|++|++++.|++|++||+..++. .+.......|.++.++++..+++....
T Consensus 435 ~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~ 514 (611)
T 1nr0_A 435 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 514 (611)
T ss_dssp EEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 01356789999999999999999999987643 233233456999999988665554311
Q ss_pred ---------e--------e-EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce-ee-eeeccC
Q psy8891 158 ---------F--------K-VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ-VE-AVLKDM 202 (203)
Q Consensus 158 ---------~--------~-~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~-~~-~~~~~~ 202 (203)
. . +...+..+.|+|++++|++|+.|++|++||+++++ .. ..+.+|
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 0 0 22346678899999999999999999999998765 33 455554
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=2.1e-26 Score=176.48 Aligned_cols=183 Identities=22% Similarity=0.402 Sum_probs=123.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|+++.|++|+.|++|++||+++.+... . +......+.+.|+++.|++|+.|++|++||+++++.+..+..|
T Consensus 70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 67899999999999999999999999876532 2 2223445678999999999999999999999999888777654
Q ss_pred CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc--ceEEEEEecCCcEEEEee
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVFA 155 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 155 (203)
.+|.++++++++ ..|++++.|++|++||+++++.+..+... ..+..+.++++...++..
T Consensus 150 ~~v~~~~~~~~~-------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 150 DPVSAVHFNRDG-------------------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp SCEEEEEECTTS-------------------SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEEcCCC-------------------CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 457777666654 45555555555555555555444443221 234444444433222221
Q ss_pred cC-eeE----------Ee---------eeEEEEEE-cCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891 156 EG-FKV----------QC---------DFTRAVFV-VDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203 (203)
Q Consensus 156 ~~-~~~----------~~---------~~~~~~~~-~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 203 (203)
.. ..+ .. ......+. +++.+|++|+.|+.|++||+.++++++++++|.
T Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 10 000 00 00112233 567899999999999999999999999998763
No 17
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=7.9e-27 Score=183.27 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=125.0
Q ss_pred ceEEcCCCCEEE--EEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee--e
Q psy8891 2 CAKFLGDPTKVV--SGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI--E 75 (203)
Q Consensus 2 ~~~~~~~~~~l~--t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~--~ 75 (203)
+++|||||++|+ |++.|++||+||+++.+... .+......++|+|++++|++++.| .+++|+..+++.+... .
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF 216 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence 589999999876 45579999999999876542 233334557899999999999855 5666666666554322 2
Q ss_pred e-CCeEEEEEecCCCceEEEecCC-------------------------------ceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891 76 L-HGKITSLDLSKGTETKFAGSSC-------------------------------NDLVTYDGAGTTIISGHFDKKVRFW 123 (203)
Q Consensus 76 ~-~~~v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~s~s~d~~i~iW 123 (203)
. ...|.+++|+|++..++.++.. ...+.|+|+|++|++|+.|++|++|
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 2 3468899999988776654321 1235799999999999999999999
Q ss_pred ECCCCceEEEE-eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891 124 DFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 124 d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~ 191 (203)
|++++++++.+ ..|.. .++.++|+||+++|+|||.|++|||||+.
T Consensus 297 d~~~~~~~~~~~~gH~~-----------------------~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSF-----------------------AITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ETTTTEEEEEETTSSSS-----------------------CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ECCCCcEEEEecCcccC-----------------------CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999888765 33321 23456678999999999999999999985
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=4.8e-27 Score=183.01 Aligned_cols=171 Identities=18% Similarity=0.264 Sum_probs=121.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E-e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--EEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F-A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~-~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~~~~ 73 (203)
+++|+|++++|+|||.|++|++||+...... . . +......+.|+|++++|++|+.|++|++||+..+. .+..
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence 5899999999999999999999999875421 1 1 22234567899999999999999999999998764 4555
Q ss_pred eeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecc-ceEEEEEecCC
Q psy8891 74 IELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIELH-GKITSLDLSKG 148 (203)
Q Consensus 74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~~~-~~v~~~~~~~~ 148 (203)
+..| +.|.+++++| ++++|++++.|++|++||++++.. +..+..+ ..+..+.++++
T Consensus 101 ~~~h~~~v~~v~~sp-------------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 101 LEGHENEVKSVAWAP-------------------SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp ECCCSSCEEEEEECT-------------------TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred ccCCCCCceEEEEeC-------------------CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 5544 4576665554 556788888888888888876533 2333333 34777777665
Q ss_pred cEEEEeecC--e-----------e-------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891 149 KYYFVFAEG--F-----------K-------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 149 ~~~~~~~~~--~-----------~-------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~ 191 (203)
..+++.... . . +...+..+.|+|++++|++|+.|++|++||..
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 443332210 0 0 01234567899999999999999999999963
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=2.4e-26 Score=178.67 Aligned_cols=187 Identities=21% Similarity=0.349 Sum_probs=144.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe------EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
+++|+|++..|++|+.|++|++||+.+.+. ...+ ......+.+.+++ .+++++.|++|++||+++++.+..+
T Consensus 102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEE
Confidence 688999999999999999999999986431 1122 2223445566654 6999999999999999999988888
Q ss_pred eeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891 75 ELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEK 130 (203)
Q Consensus 75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~ 130 (203)
..| +.|.+++++|++..++.++.... .+.|+|++++|++++.|++|++||+++++.
T Consensus 181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 755 67999999999887776654332 357889999999999999999999999887
Q ss_pred EEEEeccc---eEEEEEecCCcEEEEeecC-e-----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 131 VRDIELHG---KITSLDLSKGKYYFVFAEG-F-----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 131 ~~~~~~~~---~v~~~~~~~~~~~~~~~~~-~-----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
+..+..+. .+.++.++++..+++.... . . +...+..+.|+|++.+|+||+.|++|++||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 77665432 5888888887655544321 0 0 112456778999999999999999999997
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4.5e-26 Score=189.89 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=154.7
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--EEEeee
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRDIE 75 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~~~~~~ 75 (203)
.+++|+|||++|++++ +++|++||+.+++. .+.+ ......++++|++++|+||+.|++|+|||+..++ ...++.
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~ 100 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec
Confidence 3689999999999998 57999999986442 2322 3335667899999999999999999999997543 334454
Q ss_pred e-CCeEEEEEecCCCceEEEecCC-------------------------ceEEEEcCCCC-EEEEeeCCCeEEEEECCCC
Q psy8891 76 L-HGKITSLDLSKGTETKFAGSSC-------------------------NDLVTYDGAGT-TIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 76 ~-~~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~l~s~s~d~~i~iWd~~~~ 128 (203)
. .++|.+++|+|++..++++... ...+.|+|++. .|++++.|++|++||.+++
T Consensus 101 ~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 4 3689999999999887654321 13467899986 6999999999999999988
Q ss_pred ceEEEEecc-ceEEEEEecCCcEEEEeecC------------e-------------eEEeeeEEEEEEcCCCEEEEecCC
Q psy8891 129 EKVRDIELH-GKITSLDLSKGKYYFVFAEG------------F-------------KVQCDFTRAVFVVDDDYVAVGSID 182 (203)
Q Consensus 129 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~------------~-------------~~~~~~~~~~~~~~~~~l~s~s~d 182 (203)
++...+..| ..|.++.++++..+++.... . .+...+..+.|+|++++|++|+.|
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 888777766 45999999887665554321 0 112245678899999999999999
Q ss_pred CcEEEEeCCCceeeeeec
Q psy8891 183 GNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 183 ~~v~~wd~~~~~~~~~~~ 200 (203)
++|++||+.+++++++++
T Consensus 261 ~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CeEEEEeCCCCceeeeec
Confidence 999999999999988775
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=3.9e-26 Score=178.54 Aligned_cols=169 Identities=24% Similarity=0.352 Sum_probs=114.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++|+|++..|+|||.|++|++||+++++.. +.++ .....+.+.| +++.|+||+.|++|++||+++++++..+..
T Consensus 159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~ 238 (354)
T 2pbi_B 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238 (354)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 5789999999999999999999999987653 2222 2233455655 467999999999999999999998877765
Q ss_pred C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEEE
Q psy8891 77 H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYYF 152 (203)
Q Consensus 77 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~ 152 (203)
| ..|.+++++|++. .|++++.|++|++||+++++.+..+..+ ..+.++.++++..++
T Consensus 239 h~~~v~~v~~~p~~~-------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 239 HESDVNSVRYYPSGD-------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp CSSCEEEEEECTTSS-------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCCCeEEEEEeCCCC-------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 5 4577777766544 5555555555555555554443333221 124444444433322
Q ss_pred EeecC------------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 153 VFAEG------------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 153 ~~~~~------------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
+.... . .+...+..+.|+|++++|++|+.|++|++|+
T Consensus 300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 22110 0 0112345677889999999999999999996
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=179.40 Aligned_cols=170 Identities=19% Similarity=0.165 Sum_probs=121.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--c-CcCceEEEEeCCC-CEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--G-SSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~-~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~~~~~~~~~ 77 (203)
+++|+|++++|+||+.|++|++||+++++.... + ......+.+.+++ .+|+||+.|++|++||+++++....+..+
T Consensus 132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 689999999999999999999999998765432 2 2234456777876 48899999999999999999877666432
Q ss_pred ---CeEEEEEecCCCc-eEEEecCCce-----------------------EEEEcCCC-CEEEEeeCCCeEEEEECCCCc
Q psy8891 78 ---GKITSLDLSKGTE-TKFAGSSCND-----------------------LVTYDGAG-TTIISGHFDKKVRFWDFRAEE 129 (203)
Q Consensus 78 ---~~v~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~ 129 (203)
..+.+++++++.. .++.+...+. .+.|+|++ ++|++++.|++|++||+++++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 3578888888544 3444433322 24677876 568888888888888888766
Q ss_pred eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCCcee
Q psy8891 130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNTEQV 195 (203)
Q Consensus 130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~~~ 195 (203)
..+ +..|. ..+..+.|+|+++ +|+||+.|++|++|++.+..+
T Consensus 292 ~~~-~~~H~-----------------------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 292 LFR-SQAHR-----------------------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEE-ECCCS-----------------------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEE-EcCCC-----------------------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 432 22221 1234566778875 678999999999999987544
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=3.2e-26 Score=178.34 Aligned_cols=199 Identities=18% Similarity=0.215 Sum_probs=137.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce---EEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE---KVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~---~~~~ 73 (203)
+++|+|++++|++||.|++|++||+..... . +.+ ......+.|+|++++|++|+.|++|++||++.+. .+..
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 689999999999999999999999976542 1 222 2234557899999999999999999999998764 3444
Q ss_pred eeeC-CeEEEEEecCCCceEEEecCCce-------------------------EEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891 74 IELH-GKITSLDLSKGTETKFAGSSCND-------------------------LVTYDGAGTTIISGHFDKKVRFWDFRA 127 (203)
Q Consensus 74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~ 127 (203)
+..| ..|.+++++|++..++.++.... .+.|+|+|++|++++.|++|++||...
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 4444 56999999998877766543321 256899999999999999999999632
Q ss_pred Cc---------------eEEEEec--cceEEEEEecCCcEEEEeecC-------------------e--------eEEee
Q psy8891 128 EE---------------KVRDIEL--HGKITSLDLSKGKYYFVFAEG-------------------F--------KVQCD 163 (203)
Q Consensus 128 ~~---------------~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-------------------~--------~~~~~ 163 (203)
.. ++..+.. ...|..+.+++....++...+ + .+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 21 1222221 134677776654333322110 0 01124
Q ss_pred eEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 164 FTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 164 ~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+..+.|+|++ .+|+||+.|++|++|++.+++....++
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 6678899987 599999999999999999888776654
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=4.3e-26 Score=178.53 Aligned_cols=196 Identities=15% Similarity=0.239 Sum_probs=138.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
+++|+|++. +++++.|++|++||+.+++.. . .+......+.++|++++|++|+.|++|++||+++++.+..+
T Consensus 99 ~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 99 DVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp EEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 689999975 567889999999999875421 1 12223455788999999999999999999999999988888
Q ss_pred eeC-CeEEEEEecCCCce-EEEecCCc-------------------------eEEEEcCC-CCEEEEeeCCCeEEEEECC
Q psy8891 75 ELH-GKITSLDLSKGTET-KFAGSSCN-------------------------DLVTYDGA-GTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 75 ~~~-~~v~~~~~~~~~~~-~~~~~~~~-------------------------~~~~~~~~-~~~l~s~s~d~~i~iWd~~ 126 (203)
..| ..|.++++++++.. ++.+.... ..+.|+|+ +.+|++++.|+.|++||++
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 765 67999999987653 44433222 13568886 5689999999999999999
Q ss_pred CCceEEEEecc-ceEEEEEecCCc-EEEEeec--Ce---------------eEEeeeEEEEEEc-CCCEEEEecCCCcEE
Q psy8891 127 AEEKVRDIELH-GKITSLDLSKGK-YYFVFAE--GF---------------KVQCDFTRAVFVV-DDDYVAVGSIDGNIY 186 (203)
Q Consensus 127 ~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~~~--~~---------------~~~~~~~~~~~~~-~~~~l~s~s~d~~v~ 186 (203)
++++++.+..+ ..|.++.++++. .+++... +. .+...+..++|+| ++.+|+||+.|++|+
T Consensus 258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 99988888765 458899888653 3333221 11 0112456788998 789999999999999
Q ss_pred EEeCCC-ceeeee
Q psy8891 187 VWDCNT-EQVEAV 198 (203)
Q Consensus 187 ~wd~~~-~~~~~~ 198 (203)
+||+.+ ++....
T Consensus 338 iW~~~~~~~~~~~ 350 (357)
T 4g56_B 338 HHHLPSEGRTENL 350 (357)
T ss_dssp EEECC--------
T ss_pred EEECCCCCccccc
Confidence 999865 343333
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=1.3e-25 Score=174.65 Aligned_cols=178 Identities=21% Similarity=0.390 Sum_probs=117.5
Q ss_pred ceEE-----cC-CCCEEEEEeCCCcEEEEeCCCCC-------e--EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891 2 CAKF-----LG-DPTKVVSGSCDRTLKIWDLRSTE-------T--KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~-----~~-~~~~l~t~s~D~~v~lwdl~~~~-------~--~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~ 65 (203)
+++| ++ ++.+|+|||.|++|++||+...+ . .+.+ ......+.++|++.+|+||+.|++|++||+
T Consensus 26 ~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5667 66 89999999999999999997532 1 1122 223455778999999999999999999999
Q ss_pred CCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe----ccceE
Q psy8891 66 RAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE----LHGKI 140 (203)
Q Consensus 66 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~----~~~~v 140 (203)
++++.+..+..| +.|.+++++| ++++|++++.|++|++||+.. +...... ....+
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp-------------------~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSP-------------------DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWV 165 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECS-------------------STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCE
T ss_pred CCCcEEEEEcCCCCcEEEEEECC-------------------CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCcee
Confidence 999888777655 5677776665 445666666677777776652 2222111 11234
Q ss_pred EEEEecCCc----------EEEEeec--C--------e-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC-CC
Q psy8891 141 TSLDLSKGK----------YYFVFAE--G--------F-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC-NT 192 (203)
Q Consensus 141 ~~~~~~~~~----------~~~~~~~--~--------~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~-~~ 192 (203)
.++.+++.. .+++... + . .+...+..+.|+|++++|++|+.|++|++||+ ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 555544432 1111110 0 0 01123556778999999999999999999999 44
Q ss_pred ceeeeee
Q psy8891 193 EQVEAVL 199 (203)
Q Consensus 193 ~~~~~~~ 199 (203)
+.+...+
T Consensus 246 ~~~~~~~ 252 (343)
T 2xzm_R 246 TYPQREF 252 (343)
T ss_dssp SSCSEEE
T ss_pred cccceee
Confidence 4444444
No 26
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=9.1e-26 Score=172.29 Aligned_cols=190 Identities=17% Similarity=0.265 Sum_probs=136.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCC--Ce--EEec-CcCceEEEEeC--CCCEEEEecCCCeEEEEECCCce--EEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST--ET--KFAG-SSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEE--KVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~--~~--~~~~-~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~--~~~ 72 (203)
+++|+|+|++|+|||.|++|++||+... +. .+.+ ......+.|.+ ++++|+||+.|++|+|||++.++ .+.
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA 93 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE
Confidence 6899999999999999999999999742 21 2222 22344466755 37899999999999999998764 344
Q ss_pred eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcCC-------------CCEE
Q psy8891 73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDGA-------------GTTI 111 (203)
Q Consensus 73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~~-------------~~~l 111 (203)
.+.. ...|.+++++|+ +..++.++.... .+.|+|+ ++.|
T Consensus 94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 4443 367999999986 555554443222 2456665 5699
Q ss_pred EEeeCCCeEEEEECCCCc----eEEEEecc-ceEEEEEecCCc---EEEEeecC--e---------------e------E
Q psy8891 112 ISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSKGK---YYFVFAEG--F---------------K------V 160 (203)
Q Consensus 112 ~s~s~d~~i~iWd~~~~~----~~~~~~~~-~~v~~~~~~~~~---~~~~~~~~--~---------------~------~ 160 (203)
++++.|++|++||+++++ ....+..| ..|.++.++++. .+++.... . . .
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~ 253 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC
Confidence 999999999999998765 34455544 458899988862 44433211 0 0 0
Q ss_pred EeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~ 191 (203)
...+..+.|+|++++|++++.|++|++|+.+
T Consensus 254 ~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1234567899999999999999999999976
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.5e-25 Score=170.48 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=161.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
+++|+|++++|++|+.|++|++||+.+.+.... +......+.+.|++++|++++.|++|++||+++++.+..+....
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 116 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV 116 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 689999999999999999999999988665322 22234456789999999999999999999999999988888888
Q ss_pred eEEEEEecCCCceEEEecCC-----------------------------------------ceEEEEcCCCCEEEEeeCC
Q psy8891 79 KITSLDLSKGTETKFAGSSC-----------------------------------------NDLVTYDGAGTTIISGHFD 117 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~s~s~d 117 (203)
.+.++.+++++..++.+... ...+.|+|+++.|++++.|
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence 89999999998877765432 2335688899999999999
Q ss_pred CeEEEEECCC-CceEEEEecc-ceEEEEEecCCcEEEEeec--Cee---------------EEeeeEEEEEEcCCCEEEE
Q psy8891 118 KKVRFWDFRA-EEKVRDIELH-GKITSLDLSKGKYYFVFAE--GFK---------------VQCDFTRAVFVVDDDYVAV 178 (203)
Q Consensus 118 ~~i~iWd~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~s 178 (203)
+.|++||+++ ++....+..+ ..+.++.++++...++... +.. ....+..+.++|+++++++
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence 9999999998 6777777654 5688899887765554432 110 1123456778999999999
Q ss_pred ecCCC--------------cEEEEeCCCceeeeeeccC
Q psy8891 179 GSIDG--------------NIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 179 ~s~d~--------------~v~~wd~~~~~~~~~~~~~ 202 (203)
++.++ .+++||..+++++..+++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 99988 8999999999999988765
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=1.7e-25 Score=177.15 Aligned_cols=173 Identities=24% Similarity=0.433 Sum_probs=131.6
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCc-------------------CceEEEEeCCCCEEEEecCCCe
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSS-------------------CNDLVTYDGAGTTIISGHFDKK 59 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~-------------------~~~~~~~~~~~~~l~s~~~D~~ 59 (203)
.|++|+|||++|++|+ |+++++|++.+++.... ... ....++|+|++++|++|+.|++
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 4789999999999986 78999999987654321 110 1335788999999999999999
Q ss_pred EEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891 60 VRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 138 (203)
Q Consensus 60 i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~ 138 (203)
|+|||+.+++.+..+..| ..|.+++++ |++..|++++.|++|++||++++++...+..+.
T Consensus 147 i~iwd~~~~~~~~~~~~h~~~v~~~~~~-------------------p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 147 IRIWDIENRKIVMILQGHEQDIYSLDYF-------------------PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEC-------------------TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEECCCCcEEEEEccCCCCEEEEEEc-------------------CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 999999999888777655 446666554 566789999999999999999999888888777
Q ss_pred eEEEEEecC-CcEEEEeec--C----------ee-------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891 139 KITSLDLSK-GKYYFVFAE--G----------FK-------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 139 ~v~~~~~~~-~~~~~~~~~--~----------~~-------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~ 192 (203)
.+..+.+++ +..+++... + .. +...+..+.|+|++++|++|+.|++|++||+.+
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 888888876 433333221 1 00 112356678999999999999999999999875
Q ss_pred c
Q psy8891 193 E 193 (203)
Q Consensus 193 ~ 193 (203)
.
T Consensus 288 ~ 288 (393)
T 1erj_A 288 A 288 (393)
T ss_dssp -
T ss_pred C
Confidence 3
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.3e-25 Score=189.47 Aligned_cols=191 Identities=24% Similarity=0.324 Sum_probs=144.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee---
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE--- 75 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~--- 75 (203)
+++|+|++++|+|||.|++|++||+.+++.. +. +......+.++|+++.|+||+.|++|++||+..........
T Consensus 435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 6889999999999999999999999886543 22 22334557889999999999999999999987654332211
Q ss_pred -eCCeEEEEEecCCC--ceEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891 76 -LHGKITSLDLSKGT--ETKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129 (203)
Q Consensus 76 -~~~~v~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~ 129 (203)
+...|.+++++++. ..++.++... ..+.|+|++++|++++.|++|++||+++++
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 23468999999875 3344443222 236789999999999999999999999999
Q ss_pred eEEEEeccceEEEEEecCCcEEEEeecCeeE----------E--------------------------eeeEEEEEEcCC
Q psy8891 130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKV----------Q--------------------------CDFTRAVFVVDD 173 (203)
Q Consensus 130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~~~~~ 173 (203)
++..+..+..+.++.++++..++.......+ . ..++.+.++|++
T Consensus 595 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 595 KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp EEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred eEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 8888777778999998887655543321100 0 013567789999
Q ss_pred CEEEEecCCCcEEEEeCCC
Q psy8891 174 DYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 174 ~~l~s~s~d~~v~~wd~~~ 192 (203)
++|++|+.||+|++||+..
T Consensus 675 ~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CEEEEEcCCCeEEEEeccC
Confidence 9999999999999999863
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=2.3e-26 Score=181.30 Aligned_cols=182 Identities=18% Similarity=0.308 Sum_probs=121.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE-------E
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-------V 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-------~ 71 (203)
+++|+|++.+|+|||.|++|++||+.+.+... . +......++++|++++|++|+.|+.+++||+..... .
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~ 150 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS 150 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccce
Confidence 78999999999999999999999998765432 2 222234467899999999999999999999865321 1
Q ss_pred EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-----c-ceEEEEE
Q psy8891 72 RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-----H-GKITSLD 144 (203)
Q Consensus 72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-----~-~~v~~~~ 144 (203)
..+..| +.+.++.+.|+. +..|++++.|++|++||+++++.+..+.. + ..+.++.
T Consensus 151 ~~~~gh~~~v~~~~~~~~~------------------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 151 RVLTGHKGYASSCQYVPDQ------------------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp CBCCCCSSCCCCCBCCSSS------------------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred eeccCCCcceEEEEEecCC------------------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 222222 234444443321 23567777777777777776666555421 1 2355555
Q ss_pred ecC-CcEEEEeec--C-----------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891 145 LSK-GKYYFVFAE--G-----------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 145 ~~~-~~~~~~~~~--~-----------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
+.+ +..+++... + . .+...+..+.|+|++.+|++|+.|++|++||+++++.+.++..
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 543 222222211 0 0 0112355678899999999999999999999999999887754
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=3.2e-26 Score=181.65 Aligned_cols=202 Identities=12% Similarity=0.156 Sum_probs=151.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-CC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-HG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~~ 78 (203)
+++|+|++++|++|+.|++|++||+.+.+.. ...........++++++.|++|+.|+.|++||++.++....+.. .+
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence 5789999999999999999999999764321 11222233456788999999999999999999999888777644 46
Q ss_pred eEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891 79 KITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 135 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~ 135 (203)
.|.+++++|++..++.++.... .+.|+|+++.|++++.|++|++||+++++++..+.
T Consensus 141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 7999999999888777665433 25688999999999999999999999998888776
Q ss_pred cc----ceEEEEE---------------------ecCCcEEEEeecC------------ee-------EEeeeEEEEEEc
Q psy8891 136 LH----GKITSLD---------------------LSKGKYYFVFAEG------------FK-------VQCDFTRAVFVV 171 (203)
Q Consensus 136 ~~----~~v~~~~---------------------~~~~~~~~~~~~~------------~~-------~~~~~~~~~~~~ 171 (203)
.+ ..+..+. ++++...++.... .. ....+..+.++|
T Consensus 221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS
T ss_pred cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC
Confidence 42 2233333 2344333332211 00 112456788999
Q ss_pred CCC-EEEEecCCCcEEEEeCCCce-eeeeeccCC
Q psy8891 172 DDD-YVAVGSIDGNIYVWDCNTEQ-VEAVLKDMH 203 (203)
Q Consensus 172 ~~~-~l~s~s~d~~v~~wd~~~~~-~~~~~~~~~ 203 (203)
++. +|++|+.|+.|++||+++++ ++..+++||
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 998 99999999999999999874 477777654
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=5.7e-26 Score=179.08 Aligned_cols=194 Identities=19% Similarity=0.286 Sum_probs=140.3
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---------EEecC-cCceEEEEeCC-CCEEEEecCCCeEEEEECCCce
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---------KFAGS-SCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---------~~~~~-~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~ 69 (203)
++++|+|+++.|++|+.|++|++||+..... .+.++ .....+.+.|+ +..|+||+.|++|++||+++++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 3689999999999999999999999975221 11111 11222345554 5579999999999999999998
Q ss_pred EEEeee------eCCeEEEEEecC-CCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCC
Q psy8891 70 KVRDIE------LHGKITSLDLSK-GTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDK 118 (203)
Q Consensus 70 ~~~~~~------~~~~v~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~ 118 (203)
.+..+. ....|.++.+++ +...++.++... ..+.|+|+++.|++++.|+
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 876652 235688888876 455555443221 2367899999999999999
Q ss_pred eEEEEECCCCceEEEEeccc--------eEEEEEecCCcEEEEeecC------------e----------eEEeeeEEEE
Q psy8891 119 KVRFWDFRAEEKVRDIELHG--------KITSLDLSKGKYYFVFAEG------------F----------KVQCDFTRAV 168 (203)
Q Consensus 119 ~i~iWd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~------------~----------~~~~~~~~~~ 168 (203)
+|++||+++++++..+..+. .+.++.++++..+++.... . .+...+..+.
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 99999999998877765431 2677788776554443311 0 0112356788
Q ss_pred EEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 169 FVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 169 ~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
++|++.+|+||+.|++|++|++..++
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999998654
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=3.4e-25 Score=186.94 Aligned_cols=176 Identities=22% Similarity=0.369 Sum_probs=122.2
Q ss_pred ceEEcCCC-CEEEEEeCCCcEEEEeCCCCC-----e--EEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTE-----T--KFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~-----~--~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~ 72 (203)
|++|+|++ ..|+|||.|++|++||+.... . ... +......+.++|++++|+||+.|++|+|||+.++..++
T Consensus 387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~ 466 (694)
T 3dm0_A 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR 466 (694)
T ss_dssp EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee
Confidence 67888865 689999999999999997532 1 122 22334557889999999999999999999999998888
Q ss_pred eeeeC-CeEEEEEecCCCceEEEecCCceE--------------------------EEEcCCC--CEEEEeeCCCeEEEE
Q psy8891 73 DIELH-GKITSLDLSKGTETKFAGSSCNDL--------------------------VTYDGAG--TTIISGHFDKKVRFW 123 (203)
Q Consensus 73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~--~~l~s~s~d~~i~iW 123 (203)
.+..| +.|.++++++++..++.++....+ +.|+|++ ..|++++.|++|++|
T Consensus 467 ~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence 87765 568888888877665554433222 2344443 456677777777777
Q ss_pred ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
|+++++....+..|.. .+..+.++|++++|++|+.|++|++||+.+++.+..++
T Consensus 547 d~~~~~~~~~~~~h~~-----------------------~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTG-----------------------YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp ETTTCCEEEEECCCSS-----------------------CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred ECCCCcEEEEEcCCCC-----------------------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 7766655554443321 23345566677777777777777777777777666554
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=1.1e-25 Score=176.29 Aligned_cols=197 Identities=15% Similarity=0.177 Sum_probs=137.2
Q ss_pred ceEEcCCCCEEEEEeC------CCcEEEEeCCCCCe-------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891 2 CAKFLGDPTKVVSGSC------DRTLKIWDLRSTET-------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~------D~~v~lwdl~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~ 68 (203)
+++|+|||++|+|||. |++|++|+..++.. ...+......++|.|++ .+++++.|++|+|||+.++
T Consensus 47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEK 125 (357)
T ss_dssp EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC-----
T ss_pred EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeecccc
Confidence 7899999999999997 78899999876432 11222334457788876 5667889999999999887
Q ss_pred eEEEee-----eeCCeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCC-CEEEEeeCCCe
Q psy8891 69 EKVRDI-----ELHGKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAG-TTIISGHFDKK 119 (203)
Q Consensus 69 ~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~l~s~s~d~~ 119 (203)
+..... ...+.|.+++++|++..++.+.....+ +.|++++ ..+++++.|++
T Consensus 126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 654221 234679999999999888876654433 4566766 47899999999
Q ss_pred EEEEECCCCceEEEEecc---ceEEEEEecCC-cEEEEeec--Ce-e---------------EEeeeEEEEEEcCC-CEE
Q psy8891 120 VRFWDFRAEEKVRDIELH---GKITSLDLSKG-KYYFVFAE--GF-K---------------VQCDFTRAVFVVDD-DYV 176 (203)
Q Consensus 120 i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~-~~~~~~~~--~~-~---------------~~~~~~~~~~~~~~-~~l 176 (203)
|++||++++++...+... ..+.++.+++. ..+++... +. . ....+..++|+|++ ++|
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 285 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFL 285 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCE
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEE
Confidence 999999988876655432 34788888764 33343321 10 0 11245678899987 579
Q ss_pred EEecCCCcEEEEeCCCceeeeee
Q psy8891 177 AVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 177 ~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
++|+.|++|+|||++++++++.+
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEEC
T ss_pred EEEeCCCEEEEEECCCCcEeEEC
Confidence 99999999999999999998876
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-25 Score=170.96 Aligned_cols=171 Identities=16% Similarity=0.259 Sum_probs=114.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--E-e--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc------
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--F-A--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE------ 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~-~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~------ 68 (203)
+++|+|+ +|+||+.|++|++||+.... .. . . +......+.|+|++++|++|+.|++|+|||+...
T Consensus 19 ~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~ 96 (330)
T 2hes_X 19 SFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE 96 (330)
T ss_dssp EEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred eeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence 5778877 99999999999999998642 21 2 1 1222455789999999999999999999998532
Q ss_pred -eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC----ceEEEEecc-ceEE
Q psy8891 69 -EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE----EKVRDIELH-GKIT 141 (203)
Q Consensus 69 -~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~----~~~~~~~~~-~~v~ 141 (203)
+.+..+..| +.|.+++ |+|+|++|++++.|++|++||++.. +++..+..+ ..|.
T Consensus 97 ~~~~~~~~~h~~~V~~v~-------------------~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 97 MDLLAIIEGHENEVKGVA-------------------WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp CEEEEEEC----CEEEEE-------------------ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred ceeEEEEcCCCCcEEEEE-------------------ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 233444433 3455554 4556668888888888888888432 334444444 3577
Q ss_pred EEEecCCcEEEEeecC--e-e-----------------EEeeeEEEEEEcC--CCEEEEecCCCcEEEEeCCCc
Q psy8891 142 SLDLSKGKYYFVFAEG--F-K-----------------VQCDFTRAVFVVD--DDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 142 ~~~~~~~~~~~~~~~~--~-~-----------------~~~~~~~~~~~~~--~~~l~s~s~d~~v~~wd~~~~ 193 (203)
++.++++..+++.... . + +...+..+.|+|+ +.+|++|+.|++|++||++++
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 8777766544443211 0 0 0113345667887 668999999999999998765
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=7e-25 Score=172.33 Aligned_cols=198 Identities=13% Similarity=0.203 Sum_probs=148.0
Q ss_pred ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE--Ee---cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK--FA---GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~--~~---~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
+++|+|++ .+|++|+.|++|++||+.+.+.. .. +......+.|.| +++.|++++.|++|++||++.. ....+
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~ 156 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVF 156 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEE
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEE
Confidence 68999999 89999999999999999875543 22 222344567888 6789999999999999999864 34444
Q ss_pred eeC----CeEEEEEecCCCceEEEecCCce----------------------EEEEcCCCC-EEEEeeCCCeEEEEECCC
Q psy8891 75 ELH----GKITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGT-TIISGHFDKKVRFWDFRA 127 (203)
Q Consensus 75 ~~~----~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~-~l~s~s~d~~i~iWd~~~ 127 (203)
..+ ..|.++++++++..++.+..... .+.|+|+++ +|++++.|++|++||+++
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 322 56999999999888777654332 356888998 999999999999999987
Q ss_pred ----CceEEEEeccceEEEEEecC-CcEEEEeecC--ee-------------EE--------------------eeeEEE
Q psy8891 128 ----EEKVRDIELHGKITSLDLSK-GKYYFVFAEG--FK-------------VQ--------------------CDFTRA 167 (203)
Q Consensus 128 ----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~--~~-------------~~--------------------~~~~~~ 167 (203)
+.++..+.....+.++.+++ +...++.... .. .. .....+
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence 66677776667899999988 6554443321 10 00 011224
Q ss_pred EEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
.++|++++ +|+.|+.|++||+.+++++.+++++
T Consensus 317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred EecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 45566666 7889999999999999999999764
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=3.3e-26 Score=183.33 Aligned_cols=180 Identities=12% Similarity=0.197 Sum_probs=123.1
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCe--EEe---cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTET--KFA---GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~--~~~---~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
|++|+| ++..|++|+.||+|+|||+.+.+. ... +......+.|+| ++++|+|||.|++|++||++.+......
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 789999 567899999999999999986542 222 223345677887 6789999999999999999875433222
Q ss_pred eeCC---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCc-
Q psy8891 75 ELHG---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGK- 149 (203)
Q Consensus 75 ~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~- 149 (203)
..+. .+.+ +.|+|++.+|++|+.|++|++||++. +.+..+..+ ..|.++.+++..
T Consensus 204 ~~~~~~~~~~~-------------------~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 204 SSDTINIWFCS-------------------LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CCSSCSCCCCC-------------------EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS
T ss_pred ccCCCCccEEE-------------------EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc
Confidence 1111 1222 44666777888888888888888764 334444433 457777776543
Q ss_pred EEEEeec--Ce-------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891 150 YYFVFAE--GF-------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 150 ~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
.+++... +. .+...+..+.|+|++.+|++|+.|++|++||+.++++...+..
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 2333221 10 0112355677889999999999999999999999888776643
No 38
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=1.2e-25 Score=173.16 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=139.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe----EEec-CcCceEEEEeC--CCCEEEEecCCCeEEEEECCCce--EEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET----KFAG-SSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEE--KVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~----~~~~-~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~--~~~ 72 (203)
+++|+|++++|+|||.|++||+||+.++.. .+.+ ......+.|.+ ++++|+||+.|++|++||+++++ .+.
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH 97 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE
Confidence 689999999999999999999999986532 1222 22344566754 47899999999999999998863 445
Q ss_pred eeeeC-CeEEEEEecCC--CceEEEecCCceE--------------------------EEEcCC----------------
Q psy8891 73 DIELH-GKITSLDLSKG--TETKFAGSSCNDL--------------------------VTYDGA---------------- 107 (203)
Q Consensus 73 ~~~~~-~~v~~~~~~~~--~~~~~~~~~~~~~--------------------------~~~~~~---------------- 107 (203)
.+..| +.|.+++++|+ +..++.++....+ +.|+|+
T Consensus 98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (316)
T 3bg1_A 98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177 (316)
T ss_dssp EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence 55444 57999999997 4555555443322 345555
Q ss_pred -CCEEEEeeCCCeEEEEECCCCc---eEEEEecc-ceEEEEEecCCc----EEEEeec-C------------------ee
Q psy8891 108 -GTTIISGHFDKKVRFWDFRAEE---KVRDIELH-GKITSLDLSKGK----YYFVFAE-G------------------FK 159 (203)
Q Consensus 108 -~~~l~s~s~d~~i~iWd~~~~~---~~~~~~~~-~~v~~~~~~~~~----~~~~~~~-~------------------~~ 159 (203)
+.+|++++.|++|++||++... +...+..| ..|.++.++++. ..++... . ..
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 257 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL 257 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE
T ss_pred ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh
Confidence 3689999999999999997542 34444444 358888887753 3333211 0 00
Q ss_pred ---EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC-Cc--eeeeeec
Q psy8891 160 ---VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN-TE--QVEAVLK 200 (203)
Q Consensus 160 ---~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~-~~--~~~~~~~ 200 (203)
+...+..+.|+|++++|++|+.|++|++|+.. .+ +++.+++
T Consensus 258 ~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 258 LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp EEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC
T ss_pred hhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeecc
Confidence 11235678899999999999999999999976 33 3444443
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=3.6e-24 Score=164.51 Aligned_cols=198 Identities=16% Similarity=0.255 Sum_probs=154.0
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-----EE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--E
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-----KF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--K 70 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-----~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~ 70 (203)
.+++|+|+++.|++++ |++|++||+.+... .. ........+.+.|+++.|++++.|+.|++||++.++ .
T Consensus 55 ~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence 3689999999999999 99999999986431 11 122234457889999999999999999999998876 3
Q ss_pred EEeeeeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891 71 VRDIELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 71 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~ 126 (203)
...+..+ ..+.++++++++..++.+...+. .+.|+|+++.|++++.|+.|++||++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 4444444 56999999998887776654332 25688999999999999999999999
Q ss_pred CCceEEEEeccceEEEEEecCCcEEEEeec--Cee---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 127 AEEKVRDIELHGKITSLDLSKGKYYFVFAE--GFK---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
+++.+..+.....+..+.++++...++... +.. ....+..+.++|++++|++++.|+.|++||
T Consensus 214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 999888888888899999887755444332 110 112456778999999999999999999999
Q ss_pred CCCceeeeee
Q psy8891 190 CNTEQVEAVL 199 (203)
Q Consensus 190 ~~~~~~~~~~ 199 (203)
+.+++.+...
T Consensus 294 ~~~~~~~~~~ 303 (337)
T 1gxr_A 294 TPYGASIFQS 303 (337)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9998887554
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.8e-25 Score=170.25 Aligned_cols=191 Identities=15% Similarity=0.243 Sum_probs=129.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCC-------CeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-------ETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--- 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-------~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--- 68 (203)
+++|+|++.+|+||+.|++|++||+... +.. +. +......+.|+|++++|+||+.|++|++||++..
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 6899999999999999999999999532 111 11 2223445788999999999999999999999532
Q ss_pred -eEEEeeeeC-CeEEEEEecCCCceEEEecCCceE-------------------------EEEcCC--CCEEEEeeCCCe
Q psy8891 69 -EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDL-------------------------VTYDGA--GTTIISGHFDKK 119 (203)
Q Consensus 69 -~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~--~~~l~s~s~d~~ 119 (203)
+++..+..| ..|.+++++|++..++.++....+ +.|+|+ +..|++++.|++
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 345556555 579999999988877766544322 346677 678999999999
Q ss_pred EEEEECCCC--------ceEEEEec--cceEEEEEecCCcEEEEeec-----------Ce-e-E-E------e-eeEEEE
Q psy8891 120 VRFWDFRAE--------EKVRDIEL--HGKITSLDLSKGKYYFVFAE-----------GF-K-V-Q------C-DFTRAV 168 (203)
Q Consensus 120 i~iWd~~~~--------~~~~~~~~--~~~v~~~~~~~~~~~~~~~~-----------~~-~-~-~------~-~~~~~~ 168 (203)
|++||++.+ .+...+.. ...|.++.++++..+..... +. . . . . .+..+.
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK 302 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence 999998754 22222221 24577877775543332211 10 0 0 0 0 345567
Q ss_pred EEc--CCCEEEEecCCCcEEEEeCCC
Q psy8891 169 FVV--DDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 169 ~~~--~~~~l~s~s~d~~v~~wd~~~ 192 (203)
++| ++++|++|+.|++|++||+++
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC--
T ss_pred EecCCCceEEEEecCCCcEEEEEecc
Confidence 777 678999999999999999874
No 41
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=7.8e-25 Score=174.56 Aligned_cols=199 Identities=15% Similarity=0.249 Sum_probs=145.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC-C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-G 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~-~ 78 (203)
|++|+|+|++|++|+.|++|++||+.+++.... ..+...+.++.+++..|++|+.|+.+++||.+... .+..+..| .
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~ 231 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence 789999999999999999999999998765432 12223345566678899999999999999998754 44555544 5
Q ss_pred eEEEEEecCCCceEEEecCCce---------------------------EEEEcCCC-CEEEE--eeCCCeEEEEECCCC
Q psy8891 79 KITSLDLSKGTETKFAGSSCND---------------------------LVTYDGAG-TTIIS--GHFDKKVRFWDFRAE 128 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~-~~l~s--~s~d~~i~iWd~~~~ 128 (203)
.+..+.+.+++..++.+...+. .+.|.|.+ ..+++ |+.|++|++||++++
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 6888888888877765544332 24566654 45544 468999999999999
Q ss_pred ceEEEEeccceEEEEEecCCcEEEEeecC----e----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891 129 EKVRDIELHGKITSLDLSKGKYYFVFAEG----F----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVW 188 (203)
Q Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~w 188 (203)
++...+..+..+.++.+.+....++...+ . . +...+..++|+|++++|+||+.|++|+||
T Consensus 312 ~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 312 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 99998888888888777665444433221 0 0 12246678899999999999999999999
Q ss_pred eCCCceeeeeec
Q psy8891 189 DCNTEQVEAVLK 200 (203)
Q Consensus 189 d~~~~~~~~~~~ 200 (203)
|+.+..+.+..+
T Consensus 392 dv~~~~~~~~~~ 403 (420)
T 4gga_A 392 RCFELDPARRRE 403 (420)
T ss_dssp CCSCSSCC----
T ss_pred ECCCCCccchhh
Confidence 998766655443
No 42
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.9e-24 Score=167.75 Aligned_cols=182 Identities=17% Similarity=0.381 Sum_probs=125.0
Q ss_pred ceEEcCC---CCEEEEEeCCCcEEEEeCCC-CCeE---E-ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891 2 CAKFLGD---PTKVVSGSCDRTLKIWDLRS-TETK---F-AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~---~~~l~t~s~D~~v~lwdl~~-~~~~---~-~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~ 73 (203)
|++|+|+ |.+|++|+.|++|++||+.+ .... . .+......+.|+|++++|++++.|+.|++||++.++.+..
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee
Confidence 7899999 59999999999999999986 3332 1 2233345678899999999999999999999999988776
Q ss_pred eeeCCeEEEEEe--cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC----
Q psy8891 74 IELHGKITSLDL--SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK---- 147 (203)
Q Consensus 74 ~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~---- 147 (203)
......|.++++ ++++ .+|++++.|++|++||+++++++..+..+..+..+....
T Consensus 124 ~~~~~~v~~~~~~~~~~~-------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 124 AQHDAPVKTIHWIKAPNY-------------------SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp EECSSCEEEEEEEECSSC-------------------EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred ccccCceEEEEEEeCCCC-------------------CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 666677888877 4444 455555556666666655555444443322211111110
Q ss_pred ----------------------------------------Cc--EEEEee--cC----------------eeE---Ee--
Q psy8891 148 ----------------------------------------GK--YYFVFA--EG----------------FKV---QC-- 162 (203)
Q Consensus 148 ----------------------------------------~~--~~~~~~--~~----------------~~~---~~-- 162 (203)
.. ..++.. .+ ... ..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 00 001100 00 000 00
Q ss_pred ----------eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 163 ----------DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 163 ----------~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
.+..+.++|++++|++|+.|+.|++||+++++++.++++|
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 3667889999999999999999999999999999998765
No 43
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.5e-24 Score=173.11 Aligned_cols=195 Identities=15% Similarity=0.206 Sum_probs=144.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-----------e--EEecC-------------cCceEEEEeCCC--CEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-----------T--KFAGS-------------SCNDLVTYDGAG--TTIIS 53 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-----------~--~~~~~-------------~~~~~~~~~~~~--~~l~s 53 (203)
|++|+|++.+|++|+.||+|++||+.+.+ . .+.++ .....+.|.|++ ..|++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 78999999999999999999999998644 1 12222 224557888887 79999
Q ss_pred ecCCCeEEEEECCCceEEE---------------------------------------ee--eeCCeEEEEEecCCCceE
Q psy8891 54 GHFDKKVRFWDFRAEEKVR---------------------------------------DI--ELHGKITSLDLSKGTETK 92 (203)
Q Consensus 54 ~~~D~~i~vwd~~~~~~~~---------------------------------------~~--~~~~~v~~~~~~~~~~~~ 92 (203)
++.|++|++||+..++... .+ .+...|.++++++++..+
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 9999999999997644321 11 133568899999988776
Q ss_pred EEecCCc-------------------------------eEEEEcCCC-CEEEEeeCCCeEEEEECCCCce----EEEEec
Q psy8891 93 FAGSSCN-------------------------------DLVTYDGAG-TTIISGHFDKKVRFWDFRAEEK----VRDIEL 136 (203)
Q Consensus 93 ~~~~~~~-------------------------------~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~----~~~~~~ 136 (203)
+.+ ... ..+.|+|++ ..|++++.|++|++||+++++. ...+..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE 271 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc
Confidence 654 221 235688888 9999999999999999998876 667766
Q ss_pred cc-------------eEEEEEecCCcEEEEeecCeeEE-e----------------e----------------eEEEEEE
Q psy8891 137 HG-------------KITSLDLSKGKYYFVFAEGFKVQ-C----------------D----------------FTRAVFV 170 (203)
Q Consensus 137 ~~-------------~v~~~~~~~~~~~~~~~~~~~~~-~----------------~----------------~~~~~~~ 170 (203)
+. .+.++.++++..+++......+. . . ...+.++
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s 351 (447)
T 3dw8_B 272 PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351 (447)
T ss_dssp C-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred CCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence 54 78999998876555543321110 0 0 1127899
Q ss_pred cCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891 171 VDDDYVAVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 171 ~~~~~l~s~s~d~~v~~wd~~~~~~~~ 197 (203)
|++++|++|+.|+.|++||+.+++.+.
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCccee
Confidence 999999999999999999999988763
No 44
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=5.1e-25 Score=169.50 Aligned_cols=151 Identities=11% Similarity=0.210 Sum_probs=105.2
Q ss_pred CCcEEEEeCCC-CCeEE---ecCcCceEEEEeC---CCCEEEEecCCCeEEEEECCCceEEEeeeeCC----eEEEEEec
Q psy8891 18 DRTLKIWDLRS-TETKF---AGSSCNDLVTYDG---AGTTIISGHFDKKVRFWDFRAEEKVRDIELHG----KITSLDLS 86 (203)
Q Consensus 18 D~~v~lwdl~~-~~~~~---~~~~~~~~~~~~~---~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~----~v~~~~~~ 86 (203)
|++|++|++.. ++... .......++++++ ++..|+|||.|++|||||++++++++++..+. .+..++|+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 89999999844 54322 2333345666666 77899999999999999999999999987432 46677888
Q ss_pred CCCceEEEec------------CCceEEEEc--------------CCCC------------EEEEeeCCCeEEEEECCCC
Q psy8891 87 KGTETKFAGS------------SCNDLVTYD--------------GAGT------------TIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 87 ~~~~~~~~~~------------~~~~~~~~~--------------~~~~------------~l~s~s~d~~i~iWd~~~~ 128 (203)
|++..++..+ ....+..|+ |+|+ .+++++.|++|+|||+.++
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC
Confidence 8887764422 222333333 3333 4677777778888887777
Q ss_pred ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 129 EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
+++++++.+.. ..+..++|+|++++|++|+.|++|||||+
T Consensus 316 k~l~tL~gH~~----------------------~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSD----------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCC----------------------CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77766643321 01123578899999999999999999995
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.6e-25 Score=176.19 Aligned_cols=195 Identities=15% Similarity=0.212 Sum_probs=145.6
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCC---CC-----eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECC---Cce
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRS---TE-----TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR---AEE 69 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~---~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~---~~~ 69 (203)
+++|+| ++.+|+||+.|++|++||+.+ .. ....+......+.+.|+++.|++|+.|++|++||+. .++
T Consensus 68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence 689999 999999999999999999865 22 122333345567888999999999999999999995 566
Q ss_pred EEEeeeeCCeEEEEEecCC--CceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec---cceEEEEE
Q psy8891 70 KVRDIELHGKITSLDLSKG--TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---HGKITSLD 144 (203)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~---~~~v~~~~ 144 (203)
.......+ .+..+.+.+. ...... ....+++++..|++++.|++|++||+++++++..+.. ...+.++.
T Consensus 148 ~~~~~~~~-~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 148 EVKFLNCE-CIRKINLKNFGKNEYAVR-----MRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEEEEEEE-EEEEEEGGGGSSCCCEEE-----EEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred eeeccccc-eeEEEEccCcccccCceE-----EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 66655554 6777777763 221110 1123678899999999999999999999999988876 36799999
Q ss_pred ecCCcEEEEeecC------------eeE-------EeeeEEEEEE----cCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891 145 LSKGKYYFVFAEG------------FKV-------QCDFTRAVFV----VDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 145 ~~~~~~~~~~~~~------------~~~-------~~~~~~~~~~----~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
++++...++.... ... ...+..+.++ +++.+|++|+.|++|++||++++++++++.+
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 9887655554321 000 1134455343 4677999999999999999999999998876
Q ss_pred C
Q psy8891 202 M 202 (203)
Q Consensus 202 ~ 202 (203)
|
T Consensus 302 ~ 302 (437)
T 3gre_A 302 S 302 (437)
T ss_dssp S
T ss_pred C
Confidence 5
No 46
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=5.1e-24 Score=175.39 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=153.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-G 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~ 78 (203)
+++|+|++..|++++.|++|++||+........ .......++++|+++.|++++.|+.|++||. +++.+..+..| .
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~ 386 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 386 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence 578999999999999999999999876543322 2222345678999999999999999999996 45556666544 6
Q ss_pred eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
.|.+++++|++..++.+..... .+.|+|++++|++++.|++|++||.. ++.+..+..
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~ 465 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG 465 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEEC
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcC
Confidence 7999999999888776554332 25688999999999999999999964 566666665
Q ss_pred c-ceEEEEEecCCcEEEEeecC-ee----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 137 H-GKITSLDLSKGKYYFVFAEG-FK----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 137 ~-~~v~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
+ ..+.++.++++..+++.... .. +...++.++|+|++++|++++.|++|++||. +++++++
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 4 56888999887655554321 00 1124567889999999999999999999996 5889999
Q ss_pred eccC
Q psy8891 199 LKDM 202 (203)
Q Consensus 199 ~~~~ 202 (203)
+++|
T Consensus 545 ~~~h 548 (577)
T 2ymu_A 545 LTGH 548 (577)
T ss_dssp EECC
T ss_pred EcCC
Confidence 8876
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1e-23 Score=167.11 Aligned_cols=196 Identities=15% Similarity=0.226 Sum_probs=144.8
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCC-ceEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-~~~~~~~~~~ 77 (203)
+++|+|++..|++|+.||+|++||+.+.+.... . ......+.+ +++.|++|+.|+.|++||++. ......+..|
T Consensus 139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 689999999999999999999999988664322 1 222233444 568999999999999999984 4555566544
Q ss_pred -CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCC-CEEEEee--CCCeEEEEECCCCce
Q psy8891 78 -GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAG-TTIISGH--FDKKVRFWDFRAEEK 130 (203)
Q Consensus 78 -~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~l~s~s--~d~~i~iWd~~~~~~ 130 (203)
+.|.++++++++..++.+...+.+ +.|+|++ ..+++++ .|+.|++||++++++
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 679999999998888776654332 4677765 5666654 799999999999999
Q ss_pred EEEEeccceEEEEEecCCcEEEEeec----Cee-----------E-------EeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891 131 VRDIELHGKITSLDLSKGKYYFVFAE----GFK-----------V-------QCDFTRAVFVVDDDYVAVGSIDGNIYVW 188 (203)
Q Consensus 131 ~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~-----------~-------~~~~~~~~~~~~~~~l~s~s~d~~v~~w 188 (203)
+..+..+..+.++.++++...++... +.. . ...+..+.++|++.+|++++.|+.|++|
T Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99998888899999988765555422 110 0 1134567789999999999999999999
Q ss_pred eCCCceeeeee
Q psy8891 189 DCNTEQVEAVL 199 (203)
Q Consensus 189 d~~~~~~~~~~ 199 (203)
|+.+++.++..
T Consensus 377 ~~~~~~~~~~~ 387 (401)
T 4aez_A 377 RVYDGDHVKRP 387 (401)
T ss_dssp ECCC-------
T ss_pred ECCCCcccccc
Confidence 99998887654
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-24 Score=167.07 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=151.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCC-----CeEEEEECCCceEE---
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFD-----KKVRFWDFRAEEKV--- 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~~~~--- 71 (203)
+++|+|+++.|++++.|++|++||+.+.+... ........+.+.|+++.+++++.+ +.|++||++.....
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 79 SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 68899999999999999999999999876532 233334557889999999999999 99999999765321
Q ss_pred --------EeeeeC-C--eEEEEEecCCCceEEEecCCce------------------------EEEEcCCCCEEEEeeC
Q psy8891 72 --------RDIELH-G--KITSLDLSKGTETKFAGSSCND------------------------LVTYDGAGTTIISGHF 116 (203)
Q Consensus 72 --------~~~~~~-~--~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~ 116 (203)
..+..+ + .+.++++++++..++.+...+. .+.|+|++..|++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 111111 2 6888888888777665543322 2568899999999999
Q ss_pred CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee--------------------------------EEeee
Q psy8891 117 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK--------------------------------VQCDF 164 (203)
Q Consensus 117 d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~ 164 (203)
|+.|++||+++++.+..+.....+..+.+++....++...... ....+
T Consensus 239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 318 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318 (369)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE
T ss_pred CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE
Confidence 9999999999999998888778888888887655544322100 11245
Q ss_pred EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
..+.++|++++|++|+.|+.|++|+++++.....+
T Consensus 319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 319 NTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 66789999999999999999999999877655544
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-24 Score=186.26 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=134.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK 79 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~ 79 (203)
|++|+|++++||+|+.|++|++||....+..... ......+.|.| +++|+|++.|++|+|||+++++.+..+..++.
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~ 100 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK 100 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCC
Confidence 7899999999999999999999999876544322 22345577888 78999999999999999999998888887788
Q ss_pred EEEEEecCCCceEEEecCCceE----------------------------------EEEcCC-CCEEEEeeCCCeEEEEE
Q psy8891 80 ITSLDLSKGTETKFAGSSCNDL----------------------------------VTYDGA-GTTIISGHFDKKVRFWD 124 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~-~~~l~s~s~d~~i~iWd 124 (203)
|.+++++|++..++.+...+.+ +.|+|+ +..|++++.|++| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 9999998887766655433222 344453 3567777777777 777
Q ss_pred CCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 125 FRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
++++++++.+..+.... ........ .........+..+.|+|++.+|++|+.|++|++||+++++++..
T Consensus 180 ~~~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPF--APGGDFSE---KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp TTTTEEEEEECCCBCTT--CCCSTTCC---CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCCCceEEEEecccCCc--CCCccccc---ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 77776665554330000 00000000 00000112356788999999999999999999999999988753
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=5.8e-24 Score=181.42 Aligned_cols=201 Identities=21% Similarity=0.284 Sum_probs=157.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|++.+|++|+.||+|++||+.+++.. .. +......+.|+|+++.|++|+.|+.|+|||+.+++.+..+..|
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 6899999999999999999999999886543 22 3333556789999999999999999999999999988888754
Q ss_pred CeEEEEEecCCCceEEEecCCce------------------------EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSCND------------------------LVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR 132 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~ 132 (203)
+.|.+++++|++..++.+..... .+.|+| ++..|++++.|++|++||+.+++...
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 67999999999888776554332 256888 78899999999999999999887776
Q ss_pred EEecc--ceEEEEEecC--CcEEEEeec--C----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 133 DIELH--GKITSLDLSK--GKYYFVFAE--G----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 133 ~~~~~--~~v~~~~~~~--~~~~~~~~~--~----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
.+..+ ..+..+.+++ +...++... + .. ....+..+.++|++.+|++|+.|+.|++||+
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 66544 4577777765 443333221 1 00 1124567789999999999999999999999
Q ss_pred CCceeeeeeccC
Q psy8891 191 NTEQVEAVLKDM 202 (203)
Q Consensus 191 ~~~~~~~~~~~~ 202 (203)
.+++++.+++.+
T Consensus 258 ~~~~~~~~~~~~ 269 (814)
T 3mkq_A 258 STYKVEKTLNVG 269 (814)
T ss_dssp TTCSEEEEECCS
T ss_pred CCCcEEEEeecC
Confidence 999998888654
No 51
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.93 E-value=1.4e-23 Score=160.73 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=139.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~ 77 (203)
+++|+|++++|++|+.|++|++||+.+++... . +......+.++|++++|+||+.|++|++||++.+. ....+..|
T Consensus 60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 67899999999999999999999999876532 2 22334567889999999999999999999998874 44555554
Q ss_pred -CeEEEEEecC-CCceEEEecCCceEE------------------------EEcC--CCCEEEEeeCCCeEEEEECCCCc
Q psy8891 78 -GKITSLDLSK-GTETKFAGSSCNDLV------------------------TYDG--AGTTIISGHFDKKVRFWDFRAEE 129 (203)
Q Consensus 78 -~~v~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~--~~~~l~s~s~d~~i~iWd~~~~~ 129 (203)
..|.+++++| +...++.++....+. .|.| ++.+|++++.|++|++||+++++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 5699999998 556676666554433 3333 67799999999999999999999
Q ss_pred eEEEEecc-ceEEEEEecCCcEEEEeecC--e---------eE-------EeeeEEEEEEcCCC--EEEEecCCCcEEEE
Q psy8891 130 KVRDIELH-GKITSLDLSKGKYYFVFAEG--F---------KV-------QCDFTRAVFVVDDD--YVAVGSIDGNIYVW 188 (203)
Q Consensus 130 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~---------~~-------~~~~~~~~~~~~~~--~l~s~s~d~~v~~w 188 (203)
++..+..| ..+..+.++++...++.... . .. ...+..+.+.|++. ++++|+. ..+.+|
T Consensus 220 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~ 298 (304)
T 2ynn_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVL 298 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEE
T ss_pred cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEE
Confidence 99888876 45888888887665554321 0 00 11234566778765 4676664 557777
Q ss_pred eCCC
Q psy8891 189 DCNT 192 (203)
Q Consensus 189 d~~~ 192 (203)
++..
T Consensus 299 ~~~~ 302 (304)
T 2ynn_A 299 SLGN 302 (304)
T ss_dssp ECC-
T ss_pred Eecc
Confidence 7654
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=6e-24 Score=165.66 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=136.5
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI- 74 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~- 74 (203)
.+++|+|++++|++|+.|++|++||+.+.+ .. +. +......+.+.|++++|++++.|+.|++||++.++.....
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence 378999999999999999999999998764 22 22 2233455788999999999999999999999888754333
Q ss_pred --eeCCeEEEEEecCCCceEEEecCCc---------------------------eEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891 75 --ELHGKITSLDLSKGTETKFAGSSCN---------------------------DLVTYDGAGTTIISGHFDKKVRFWDF 125 (203)
Q Consensus 75 --~~~~~v~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~ 125 (203)
.....|.++++++++..++.+.... ..+.|+|++++|++++.|++|++||+
T Consensus 92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 2346799999999887766554322 12467888999999999999999996
Q ss_pred C------------------CCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891 126 R------------------AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV 187 (203)
Q Consensus 126 ~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~ 187 (203)
+ .++++..+..+ ...+..+.++|++++|++++.|+.|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESSSS-----------------------CGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECCCC-----------------------SSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred ccccccccccccccccccchhhheEecCCC-----------------------CCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5 23333333211 112445667789999999999999999
Q ss_pred EeCCCceeeeeeccC
Q psy8891 188 WDCNTEQVEAVLKDM 202 (203)
Q Consensus 188 wd~~~~~~~~~~~~~ 202 (203)
||+++++++.+++.|
T Consensus 229 ~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 229 ADADKKMAVATLASE 243 (372)
T ss_dssp EEGGGTTEEEEEECS
T ss_pred EECCCCceeEEEccC
Confidence 999999999988765
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=1.9e-24 Score=169.75 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=96.7
Q ss_pred EEEEeCCCCEEE--EecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce------------------
Q psy8891 41 LVTYDGAGTTII--SGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND------------------ 100 (203)
Q Consensus 41 ~~~~~~~~~~l~--s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------ 100 (203)
.++|+||+++|+ |++.|++|||||+++++++..+..++.|.+++|+|++..++.+.....
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence 467889999765 667899999999999999888887788888888877665544322110
Q ss_pred ------EEEEcCCCCEEEEeeCCC----eEEEEECCCCceEEE--EeccceEEEEEecCCcEEEEeecCeeEEeeeEEEE
Q psy8891 101 ------LVTYDGAGTTIISGHFDK----KVRFWDFRAEEKVRD--IELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAV 168 (203)
Q Consensus 101 ------~~~~~~~~~~l~s~s~d~----~i~iWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (203)
.+.|+|++..+++++.|+ ++++||+........ .... .....++.+.
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~V~~~~ 276 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT---------------------NRFKGITSMD 276 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE---------------------SSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec---------------------CCCCCeEeEE
Confidence 134556666666666555 455555543322100 0000 0011345677
Q ss_pred EEcCCCEEEEecCCCcEEEEeCCCceeeeee-ccC
Q psy8891 169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL-KDM 202 (203)
Q Consensus 169 ~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~-~~~ 202 (203)
|+|++++|++|+.|++|+|||++++++++++ ++|
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 8899999999999999999999999999986 454
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.2e-25 Score=176.08 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=129.2
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCC--CeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce---EEE
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST--ETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE---KVR 72 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~--~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~---~~~ 72 (203)
.|++|+|++++|++|+.|++|++||+.+. +.. +. +......+.++|++++|++++.|++|++||+..++ ...
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence 47899999999999999999999999875 221 11 22234557889999999999999999999998876 333
Q ss_pred eee-eCCeEEEEEecCCCceEEEecCCc---------------------------eEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891 73 DIE-LHGKITSLDLSKGTETKFAGSSCN---------------------------DLVTYDGAGTTIISGHFDKKVRFWD 124 (203)
Q Consensus 73 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~s~s~d~~i~iWd 124 (203)
.+. ....|.+++++|++..++.+.... ..+.|+|++++|++++.|++|++||
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 333 346799999998877665443221 2356888999999999999999999
Q ss_pred CCCCceEEEEeccceEEEEEecCC--cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee----eee
Q psy8891 125 FRAEEKVRDIELHGKITSLDLSKG--KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV----EAV 198 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~----~~~ 198 (203)
++..+......... .... ..... .. +.....+..+.|+|++++|++|+.|++|++||+.+++. +.+
T Consensus 175 ~~~~~~~~~~~~~~------~~~~~~~~~~~-~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 175 AYVRDVDAKPEASV------WGSRLPFNTVC-AE-YPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp ECCSSCC-CCCSCS------SCSCCCEEEEE-EC-CCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred EEecccCCCccccc------cccccchhhhh-hc-ccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 86443211000000 0000 00000 00 01122355677889999999999999999999999887 777
Q ss_pred eccC
Q psy8891 199 LKDM 202 (203)
Q Consensus 199 ~~~~ 202 (203)
+++|
T Consensus 247 ~~~~ 250 (377)
T 3dwl_C 247 VKLS 250 (377)
T ss_dssp EECS
T ss_pred ecCC
Confidence 7654
No 55
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.8e-23 Score=172.13 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=150.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~ 78 (203)
+++|+|++..|++++.|++|++||....... ..+ ......++++|+++.|++++.|++|++||+..... ..+. ...
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~ 345 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSS 345 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCC
Confidence 5789999999999999999999998654322 222 22234567899999999999999999999876544 3443 346
Q ss_pred eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
.+.+++++|++..++.+..... .+.|+|+|+.|++++.|++|++||. +++.+..+..
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 7999999999888776654332 2568899999999999999999995 4666766665
Q ss_pred c-ceEEEEEecCCcEEEEeecC-ee----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 137 H-GKITSLDLSKGKYYFVFAEG-FK----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 137 ~-~~v~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
+ ..+..+.++++...++.... .. ....+..+.|+|++++|++++.|++|++||. +++++++
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~ 503 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 503 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 5 45888888887655543321 00 1124567889999999999999999999996 5888888
Q ss_pred eccC
Q psy8891 199 LKDM 202 (203)
Q Consensus 199 ~~~~ 202 (203)
+++|
T Consensus 504 ~~~h 507 (577)
T 2ymu_A 504 LTGH 507 (577)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8776
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=3.8e-23 Score=163.91 Aligned_cols=190 Identities=13% Similarity=0.182 Sum_probs=146.3
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-C
Q psy8891 3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-G 78 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~ 78 (203)
..|++++++|++|+.|++|++||+.+.+.... +......+.|+|++++|++|+.|++|++||+++++.+..+..| +
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 182 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence 46799999999999999999999987665432 2223455788999999999999999999999999888887755 6
Q ss_pred eEEEEEecCCCceEEEecCCceEEEE-----------------------------------------------cCCCCEE
Q psy8891 79 KITSLDLSKGTETKFAGSSCNDLVTY-----------------------------------------------DGAGTTI 111 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~l 111 (203)
.|.+++++|++..++.++....+..| +|++++|
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence 79999999999888877665544333 4678899
Q ss_pred EEeeCCCeEEEEECCCCceEEEEec--cceEEEEEecCCcE-EEEeec--Ce--------------eEE---eeeEEEEE
Q psy8891 112 ISGHFDKKVRFWDFRAEEKVRDIEL--HGKITSLDLSKGKY-YFVFAE--GF--------------KVQ---CDFTRAVF 169 (203)
Q Consensus 112 ~s~s~d~~i~iWd~~~~~~~~~~~~--~~~v~~~~~~~~~~-~~~~~~--~~--------------~~~---~~~~~~~~ 169 (203)
++++.|+.|++||+++++....+.. ...+.++.++++.. +++... +. ... .......+
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred EEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 9999999999999999887777654 24688998887654 333321 11 000 11233446
Q ss_pred EcCCCEEEEecCCCcEEEEeCCC
Q psy8891 170 VVDDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 170 ~~~~~~l~s~s~d~~v~~wd~~~ 192 (203)
.+++++|++++.|+.|++||+..
T Consensus 343 ~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 343 FAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EETTEEEEEETTTEEEEEEEECC
T ss_pred eCCCCEEEEecCCccEEEEeccC
Confidence 67889999999999999999875
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=2.3e-23 Score=167.53 Aligned_cols=144 Identities=22% Similarity=0.358 Sum_probs=101.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK 79 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~ 79 (203)
.+.+++..|+||+.|++|++||+.+++.... +......+.+.+++ .|++|+.|++|++||+++++.+..+..| +.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~ 205 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 205 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc
Confidence 3455788999999999999999988765322 22234456677766 9999999999999999999988888754 67
Q ss_pred EEEEEecC--CCceEEEecCCceEEE--------------------------------------------EcCCCCEEEE
Q psy8891 80 ITSLDLSK--GTETKFAGSSCNDLVT--------------------------------------------YDGAGTTIIS 113 (203)
Q Consensus 80 v~~~~~~~--~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~l~s 113 (203)
|.++++.+ ++..+++++....+.. +++++..+++
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 285 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEE
Confidence 88888874 4455555444333322 3344667888
Q ss_pred eeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCC
Q psy8891 114 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKG 148 (203)
Q Consensus 114 ~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~ 148 (203)
++.|++|++||+++++++..+..+ ..+.++.++++
T Consensus 286 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 888888888888777776666543 33555555443
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.93 E-value=3.9e-23 Score=158.70 Aligned_cols=165 Identities=19% Similarity=0.317 Sum_probs=134.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
+++|+|++..+++++.|+.|++||+++.+... . +......+.+.|+++.|++++.|+.|++||++.++.+..+....
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 225 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC
Confidence 57899999999999999999999998865432 2 22234457789999999999999999999999999888888888
Q ss_pred eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
.+.+++++|++..++.+..... .+.|+|++++|++++.|+.|++||+.+++.+.....
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 305 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 305 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC
Confidence 8999999999888776654332 256889999999999999999999998876644333
Q ss_pred cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 137 HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
...+ ..+.++|++++|++++.|+.|++||+
T Consensus 306 ~~~v------------------------~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 306 SSSV------------------------LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCE------------------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCcE------------------------EEEEECCCCCEEEEecCCCeEEEEEE
Confidence 3333 34556789999999999999999996
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.1e-23 Score=163.57 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=121.4
Q ss_pred ceEEcCC----CCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891 2 CAKFLGD----PTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~----~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~ 73 (203)
+++|+|+ +.+|++|+.|++|++||+.+.+.. +. +......+.+.| +++.|++|+.|+.|++||+++++.+..
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 6789998 668999999999999999886643 22 233345577888 889999999999999999999988777
Q ss_pred e----eeCCeEEEEEecCCCceEEEecCCceEEEEcCC------------------------------------------
Q psy8891 74 I----ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA------------------------------------------ 107 (203)
Q Consensus 74 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 107 (203)
+ .....|.++++++++..++.+...+.+..|+..
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 6 234678888887766655555444444444321
Q ss_pred -------CCEEEEeeCCCeEEEEECCCCceEE-EEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC--CCEE
Q psy8891 108 -------GTTIISGHFDKKVRFWDFRAEEKVR-DIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD--DDYV 176 (203)
Q Consensus 108 -------~~~l~s~s~d~~i~iWd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 176 (203)
+.+|++++.|+.|++||+++++... .+.... .+.. .... ......+..+.++|+ +++|
T Consensus 234 v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 234 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI---------LGRF--DYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp CCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE---------EEEE--ECSSCCSSCCCCEECTTSSEE
T ss_pred EEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchhe---------eccc--cccCCcEEEEEEcCCCCCcEE
Confidence 4456666666666666655443200 000000 0000 0000 000112344567788 9999
Q ss_pred EEecCCCcEEEEeCCCceeee
Q psy8891 177 AVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 177 ~s~s~d~~v~~wd~~~~~~~~ 197 (203)
++|+.|+.|++||+++++++.
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGG
T ss_pred EEEecCCcEEEEECCCCCCcc
Confidence 999999999999999887544
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=3.9e-23 Score=157.82 Aligned_cols=197 Identities=15% Similarity=0.240 Sum_probs=133.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++||+++ .|++| .|++|||||+.+++.. +... .....+.++|++++|+||+.|++|++||+++++.++.+..
T Consensus 30 ~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 30 LVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp CEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 57899886 56655 5999999999987753 2222 2245578999999999999999999999999999888776
Q ss_pred CC-eEEEEEecCCCceEEEecC------------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891 77 HG-KITSLDLSKGTETKFAGSS------------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV 131 (203)
Q Consensus 77 ~~-~v~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~ 131 (203)
|. .+..+...+ ..++.+.. ......+.++++.|++++.|++|++||+++++..
T Consensus 108 h~~~~~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 108 HSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp CSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred ccceEEEeecCC--CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 53 344443322 22222221 1233567889999999999999999999876532
Q ss_pred ----EEE-eccceEEEEEecCCc-EEE-E-eecC------------e-----eEEeeeEEEEEEcCCCEEEEe--cCCCc
Q psy8891 132 ----RDI-ELHGKITSLDLSKGK-YYF-V-FAEG------------F-----KVQCDFTRAVFVVDDDYVAVG--SIDGN 184 (203)
Q Consensus 132 ----~~~-~~~~~v~~~~~~~~~-~~~-~-~~~~------------~-----~~~~~~~~~~~~~~~~~l~s~--s~d~~ 184 (203)
... .....+..+...+.. ..+ . .... . .....+....+.++++.++++ +.|+.
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 111 122345555554321 111 1 1100 0 011234567788888887664 48999
Q ss_pred EEEEeCCCceeeeeeccC
Q psy8891 185 IYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 185 v~~wd~~~~~~~~~~~~~ 202 (203)
|++||+.++++++++++|
T Consensus 266 i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 266 LVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp EEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEEEEEcCC
Confidence 999999999999999887
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-23 Score=162.72 Aligned_cols=192 Identities=17% Similarity=0.264 Sum_probs=142.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCce--EEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEE--KVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~--~~~ 72 (203)
+++|+|++.+|++|+.|++|++||+.... .. +. +......+.|.++ +++|++|+.|+.|++||++.++ .+.
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 95 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee
Confidence 68999999999999999999999997432 21 22 2223445677766 8899999999999999999886 455
Q ss_pred eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcC-------------CCCEE
Q psy8891 73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDG-------------AGTTI 111 (203)
Q Consensus 73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~-------------~~~~l 111 (203)
.+.. ...|.+++++|+ +..++.+..... .+.|+| ++..|
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 175 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence 5543 467999999998 666666544332 256778 68999
Q ss_pred EEeeCCCeEEEEECCCCceE----EEEecc-ceEEEEEecCC---cEEEEeecC--e---------------e------E
Q psy8891 112 ISGHFDKKVRFWDFRAEEKV----RDIELH-GKITSLDLSKG---KYYFVFAEG--F---------------K------V 160 (203)
Q Consensus 112 ~s~s~d~~i~iWd~~~~~~~----~~~~~~-~~v~~~~~~~~---~~~~~~~~~--~---------------~------~ 160 (203)
++++.|++|++||++++... ..+..+ ..+.++.++++ ..+++.... . . .
T Consensus 176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255 (379)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence 99999999999999876533 333333 45889999887 555544321 0 0 1
Q ss_pred EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~ 193 (203)
...+..+.++|++++|++++.|+.|++||++.+
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 123567789999999999999999999998743
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-23 Score=166.09 Aligned_cols=201 Identities=11% Similarity=0.204 Sum_probs=153.5
Q ss_pred ceEEcCCCC-EEEEE----------eCCCcEEEEeCCCCC---eE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891 2 CAKFLGDPT-KVVSG----------SCDRTLKIWDLRSTE---TK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~-~l~t~----------s~D~~v~lwdl~~~~---~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~ 65 (203)
+++|+|+++ +|++| +.|++|++||+.+.. .. ..+......+.|+|++++|++|+.|+.|++||+
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~ 96 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYST 96 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECC
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeec
Confidence 789999997 99999 899999999998643 11 222233455788999999999999999999999
Q ss_pred CC----ceEEEeeeeC-CeEEEEEecCC-CceEEEecCCc--------------------------------eEEEEcCC
Q psy8891 66 RA----EEKVRDIELH-GKITSLDLSKG-TETKFAGSSCN--------------------------------DLVTYDGA 107 (203)
Q Consensus 66 ~~----~~~~~~~~~~-~~v~~~~~~~~-~~~~~~~~~~~--------------------------------~~~~~~~~ 107 (203)
.. .+.+..+..| +.|.+++++|+ +..++.+.... ..+.|+|+
T Consensus 97 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (416)
T 2pm9_A 97 NEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS 176 (416)
T ss_dssp SSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS
T ss_pred ccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC
Confidence 87 3455566544 67999999997 66665443211 13678888
Q ss_pred -CCEEEEeeCCCeEEEEECCCCceEEEEecc-------ceEEEEEecCCc-EEEEe-ecC----e---------------
Q psy8891 108 -GTTIISGHFDKKVRFWDFRAEEKVRDIELH-------GKITSLDLSKGK-YYFVF-AEG----F--------------- 158 (203)
Q Consensus 108 -~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-------~~v~~~~~~~~~-~~~~~-~~~----~--------------- 158 (203)
+.+|++++.|++|++||+++++.+..+..+ ..+.++.++++. .+++. ... .
T Consensus 177 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 177 LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 789999999999999999999888887763 568889888763 23332 111 0
Q ss_pred ---eEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 159 ---KVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 159 ---~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
.....+..+.++| ++.+|++++.|+.|++||+++++++.++++|
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 0122456778888 8999999999999999999999999998765
No 63
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=2e-22 Score=154.83 Aligned_cols=198 Identities=13% Similarity=0.182 Sum_probs=142.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----eE--Ee-cCcCceEEEEeC--CCCEEEEecCCCeEEEEECCCc----
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----TK--FA-GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAE---- 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----~~--~~-~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~---- 68 (203)
+++|+|++.+|++|+.|++|++||+.+.. .. +. +......+.|.| ++++|++|+.|++|++||++.+
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 78999999999999999999999998643 11 12 223345567877 5899999999999999999876
Q ss_pred -----eEEEeeee-CCeEEEEEecCC--CceEEEecCCceEEEEc-----------------------------------
Q psy8891 69 -----EKVRDIEL-HGKITSLDLSKG--TETKFAGSSCNDLVTYD----------------------------------- 105 (203)
Q Consensus 69 -----~~~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~----------------------------------- 105 (203)
+.+..+.. .+.|.+++++++ +..++.+.....+..|+
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 34555544 467999999998 77777666555444443
Q ss_pred -CC---CCEEEEeeCCCeEEEEECCCCce--EEEEecc-ceEEEEEecCCc----EEEEeecC--e--------------
Q psy8891 106 -GA---GTTIISGHFDKKVRFWDFRAEEK--VRDIELH-GKITSLDLSKGK----YYFVFAEG--F-------------- 158 (203)
Q Consensus 106 -~~---~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~-~~v~~~~~~~~~----~~~~~~~~--~-------------- 158 (203)
|+ +..+++++.|+.+.+|+...++. +..+..+ ..|.++.++++. .+++.... .
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 33 77888888888888887776664 3333333 458888888875 44433211 0
Q ss_pred -----------------------------------------e-------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 159 -----------------------------------------K-------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 159 -----------------------------------------~-------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
. +...+..+.++|++++|++|+.|+.|++||+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 0 0113556778999999999999999999999
Q ss_pred CCceeeeee
Q psy8891 191 NTEQVEAVL 199 (203)
Q Consensus 191 ~~~~~~~~~ 199 (203)
++++..+.+
T Consensus 336 ~~~~~~~~~ 344 (351)
T 3f3f_A 336 TYSNEFKCM 344 (351)
T ss_dssp CTTSCEEEE
T ss_pred CcCcchhhe
Confidence 987655554
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=2.2e-23 Score=185.26 Aligned_cols=201 Identities=16% Similarity=0.242 Sum_probs=153.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH- 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~- 77 (203)
+++|+|++++|++|+.|++|++||+.+++.... +......+.++|++++|++|+.|++|+|||+.+++.+..+..|
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 699 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 699 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 689999999999999999999999998765322 2233455789999999999999999999999999988888765
Q ss_pred CeEEEEEecCCCc--eEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891 78 GKITSLDLSKGTE--TKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 132 (203)
Q Consensus 78 ~~v~~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~ 132 (203)
+.|.+++++++.. .++.++..+ ..+.|+|+++.+++++.|++|++||+++++...
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence 5799999998533 344443322 235788999999999999999999999887776
Q ss_pred EEeccc--------------eEEEEEecCCcEEEEeecCee------------------EEeeeEEEEEEcCCCEEEEec
Q psy8891 133 DIELHG--------------KITSLDLSKGKYYFVFAEGFK------------------VQCDFTRAVFVVDDDYVAVGS 180 (203)
Q Consensus 133 ~~~~~~--------------~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~s~s 180 (203)
.+.... .+.++.++++...++...... ....+..+.++|++.++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 654321 344455555543333221110 012345678999999999999
Q ss_pred CCCcEEEEeCCCceeeeeeccC
Q psy8891 181 IDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 181 ~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
.|+.|++||+.+++.+..+++|
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCC
T ss_pred CCCeEEEEEcCCCceeeecCCC
Confidence 9999999999999999988765
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=1.9e-23 Score=161.20 Aligned_cols=199 Identities=12% Similarity=0.134 Sum_probs=146.6
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----eE--EecCcCceEEEEeCCCC-EEEEecCCCeEEEEEC-CCceEEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----TK--FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDF-RAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----~~--~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~-~~~~~~~~ 73 (203)
+++|+|++..|++|+.|++|++||+.... .. ..+......+.+.|+++ .|++|+.|+.|++||+ ..++....
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 95 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEec
Confidence 68999999999999999999999998755 22 22233345577889999 9999999999999999 77765333
Q ss_pred ee--eCCeEEEEEecCCCceEEEecCCceE-------------------------------EEEcCCCCEEEEeeCCCeE
Q psy8891 74 IE--LHGKITSLDLSKGTETKFAGSSCNDL-------------------------------VTYDGAGTTIISGHFDKKV 120 (203)
Q Consensus 74 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~l~s~s~d~~i 120 (203)
.. ....|.++++++ +..++.+.....+ +.|++++ +++++.|+.|
T Consensus 96 ~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i 172 (342)
T 1yfq_A 96 TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQV 172 (342)
T ss_dssp BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEE
T ss_pred cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeE
Confidence 23 446799999998 7766665544333 3444544 8999999999
Q ss_pred EEEECCC-CceE-E--EEeccceEEEEEecC-CcEEEEeec------------C------e---eEEe------------
Q psy8891 121 RFWDFRA-EEKV-R--DIELHGKITSLDLSK-GKYYFVFAE------------G------F---KVQC------------ 162 (203)
Q Consensus 121 ~iWd~~~-~~~~-~--~~~~~~~v~~~~~~~-~~~~~~~~~------------~------~---~~~~------------ 162 (203)
++||+++ +... . .......+.++.+++ +...++... . . ....
T Consensus 173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 9999987 5432 2 222335688888877 543333211 0 0 0111
Q ss_pred eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203 (203)
Q Consensus 163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 203 (203)
.+..+.++|++++|++|+.|+.|++||+++++++.++++||
T Consensus 253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 293 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred eEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc
Confidence 45677899999999999999999999999999999998874
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.1e-22 Score=168.07 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=155.7
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCC----CeE--Ee-cCcC-ceEEEEeC--CCCEEEEecCCCeEEEEECCCc--
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST----ETK--FA-GSSC-NDLVTYDG--AGTTIISGHFDKKVRFWDFRAE-- 68 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~----~~~--~~-~~~~-~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~-- 68 (203)
.+++|+|++++|++++ |+.|++||+.++ +.. +. +... ...+.++| ++++|++|+.|++|++||+.++
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 3689999999999998 899999999876 432 22 2233 45678999 9999999999999999999744
Q ss_pred ------eEEEeeee-CCeEEEEEecCCCceEEEecCC-------------------------ceEEEEcCCCC-EEEEee
Q psy8891 69 ------EKVRDIEL-HGKITSLDLSKGTETKFAGSSC-------------------------NDLVTYDGAGT-TIISGH 115 (203)
Q Consensus 69 ------~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~l~s~s 115 (203)
+....+.. ...|.+++++|++..++.+... ...+.|+|++. .+++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence 45555553 4679999999999887766533 23467899987 899999
Q ss_pred CCCeEEEEECCCCceEEEEeccc----eEEEEEecCC-cEEEEeec--Ce--------------------eEEeeeEEEE
Q psy8891 116 FDKKVRFWDFRAEEKVRDIELHG----KITSLDLSKG-KYYFVFAE--GF--------------------KVQCDFTRAV 168 (203)
Q Consensus 116 ~d~~i~iWd~~~~~~~~~~~~~~----~v~~~~~~~~-~~~~~~~~--~~--------------------~~~~~~~~~~ 168 (203)
.|++|++||+.+++.+..+..+. .+.++.++++ ...++... +. .....+..+.
T Consensus 181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~ 260 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260 (615)
T ss_dssp TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE
Confidence 99999999999999888887664 5999999887 55444321 10 1112345667
Q ss_pred EEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 169 ~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
++ ++++|++++.|+.|++||+++++++..++.+
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 77 9999999999999999999999999887654
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.3e-23 Score=162.51 Aligned_cols=192 Identities=15% Similarity=0.222 Sum_probs=141.6
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK 79 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~ 79 (203)
+++|+|++++|++|+.|++|++||....... .. +......+.+.|+++.|++++.|+.|++||+++++.+..+..+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 6889999999999999999999995433222 22 223345578899999999999999999999999888776654432
Q ss_pred ----------------EEEEEecCCCceEEEec-----------------------CCceEEEEcCCCCEEEEeeCCCeE
Q psy8891 80 ----------------ITSLDLSKGTETKFAGS-----------------------SCNDLVTYDGAGTTIISGHFDKKV 120 (203)
Q Consensus 80 ----------------v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~s~s~d~~i 120 (203)
+.++.+.++.. ++.+. .....+.|+|+++.|++++.|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 55566665533 22221 112346789999999999999999
Q ss_pred EEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCee-----------E------EeeeEEEEEEcCCCEEEEecCC
Q psy8891 121 RFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFK-----------V------QCDFTRAVFVVDDDYVAVGSID 182 (203)
Q Consensus 121 ~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~l~s~s~d 182 (203)
++||+++++....+..+ ..+..+.++++..++....... . ...+..+.++|++++|++++.|
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 99999998888877644 5688888887763332221110 0 1235567889999999999999
Q ss_pred CcEEEEeCCCce
Q psy8891 183 GNIYVWDCNTEQ 194 (203)
Q Consensus 183 ~~v~~wd~~~~~ 194 (203)
+.|++||+.+++
T Consensus 352 g~i~i~~~~~~~ 363 (425)
T 1r5m_A 352 GQVNVYDLKKLN 363 (425)
T ss_dssp SCEEEEECHHHH
T ss_pred CeEEEEECCCCc
Confidence 999999999888
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=172.14 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=115.5
Q ss_pred ceEEcCC------CCEEEEEeCCCcEEEEeCCCCCe-------------EEec-CcCceEEEEeCCCCEEEEecCCCeEE
Q psy8891 2 CAKFLGD------PTKVVSGSCDRTLKIWDLRSTET-------------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVR 61 (203)
Q Consensus 2 ~~~~~~~------~~~l~t~s~D~~v~lwdl~~~~~-------------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~ 61 (203)
+++|+|+ +..|+|||.|++||+||+..... .+.+ ......+.|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 5788886 57999999999999999976431 1111 122344667664 5899999999999
Q ss_pred EEECCCce-EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891 62 FWDFRAEE-KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHG 138 (203)
Q Consensus 62 vwd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~ 138 (203)
+||+++++ +...+..| +.|.++++ .|+++| ++|+|++.|++|++||++++++...+..+.
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~-----------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVST-----------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEE-----------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred EEECCCCCCceEEeecccccEEEEEE-----------------EcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 99998764 33445444 55776631 234454 577788888888888877666554443332
Q ss_pred ---eEEEEEecCCcEEEEeecC------------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891 139 ---KITSLDLSKGKYYFVFAEG------------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 139 ---~v~~~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~ 193 (203)
.+.++.++++...++.... . .+...+..+.|+|++++|++|+.|++|++||+..+
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 2556666664333332111 0 01124566778899999999999999999998643
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=9.9e-23 Score=161.30 Aligned_cols=180 Identities=18% Similarity=0.257 Sum_probs=133.8
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCC-------Ce--EEe-cCcCceEEEEeCCC-CEEEEecCCCeEEEEECCCce
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRST-------ET--KFA-GSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~-------~~--~~~-~~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~ 69 (203)
+++|+| ++..|++|+.|++|++||+.+. +. .+. +......+.|.|++ +.|++++.|++|++||+++++
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 689999 9999999999999999999875 21 222 23334557888987 699999999999999999998
Q ss_pred EEEee--ee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccc--eEEEE
Q psy8891 70 KVRDI--EL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHG--KITSL 143 (203)
Q Consensus 70 ~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~--~v~~~ 143 (203)
.+..+ .. .+.|.++++ +|++..|++++.|++|++||+++++.+..+ ..+. .+..+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~-------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDW-------------------SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp EEEEECTTTCCSCEEEEEE-------------------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred ccEEEecCCCCCceEEEEE-------------------CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence 87776 33 345666554 456678999999999999999999888877 4443 26677
Q ss_pred EecCCcEEEEee----cCee-------------------EEeeeEEEEEEcCCCEEE-EecCCCcEEEEeCCCcee-eee
Q psy8891 144 DLSKGKYYFVFA----EGFK-------------------VQCDFTRAVFVVDDDYVA-VGSIDGNIYVWDCNTEQV-EAV 198 (203)
Q Consensus 144 ~~~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~~~~~-~~~ 198 (203)
.++++..+++.. .... ....+..+.++|++++|+ +|+.|+.|++||+.+++. +..
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 777766555543 1110 011245677899999886 566899999999998874 444
Q ss_pred ec
Q psy8891 199 LK 200 (203)
Q Consensus 199 ~~ 200 (203)
+.
T Consensus 307 l~ 308 (402)
T 2aq5_A 307 LS 308 (402)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-24 Score=172.16 Aligned_cols=200 Identities=10% Similarity=0.098 Sum_probs=132.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCC---CCCeEE--ecC-----------cCceE--EE--EeCCCCEEEEecCCCeEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLR---STETKF--AGS-----------SCNDL--VT--YDGAGTTIISGHFDKKVR 61 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~---~~~~~~--~~~-----------~~~~~--~~--~~~~~~~l~s~~~D~~i~ 61 (203)
+++|+|++..|++|+.|++|++||+. .++... ... ....+ +. +.++++.|++|+.|++|+
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 195 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI 195 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE
Confidence 68999999999999999999999995 332211 000 11111 11 446788999999999999
Q ss_pred EEECCCceEEEeeee---CCeEEEEEecCCCceEEEecCCceE------------------------EEE----cCCCCE
Q psy8891 62 FWDFRAEEKVRDIEL---HGKITSLDLSKGTETKFAGSSCNDL------------------------VTY----DGAGTT 110 (203)
Q Consensus 62 vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~----~~~~~~ 110 (203)
+||+++++.+..+.. .+.|.+++++|++..++.+...+.+ +.| ++++.+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence 999999998888875 3679999888877766655443322 212 234557
Q ss_pred EEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEe--ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891 111 IISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVF--AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV 187 (203)
Q Consensus 111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~ 187 (203)
|++++.|++|++||+++++++..+..+. .+..+.+++....+.. ..+......+..+.++ ++++|++|+.|+.|++
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 7777777777777777777666655332 1211112211100000 0000011234556777 7789999999999999
Q ss_pred EeCCCceeeeeeccC
Q psy8891 188 WDCNTEQVEAVLKDM 202 (203)
Q Consensus 188 wd~~~~~~~~~~~~~ 202 (203)
||+.++++.+++.+|
T Consensus 355 wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 355 FSLNELSSSKAVISP 369 (437)
T ss_dssp EETTCGGGCEEEECC
T ss_pred EECCCcccceEEecc
Confidence 999999999988764
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=9.7e-23 Score=160.35 Aligned_cols=183 Identities=15% Similarity=0.208 Sum_probs=141.9
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--Ee--------------cCcCceEEEEeC-CCCEEEEecCCCeEEEE
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FA--------------GSSCNDLVTYDG-AGTTIISGHFDKKVRFW 63 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~--------------~~~~~~~~~~~~-~~~~l~s~~~D~~i~vw 63 (203)
+++|+| ++..|++|+.||+|++||+.+.+.. .. +......+.|.| +++.|++++.|+.|++|
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 127 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEe
Confidence 789999 9999999999999999999874321 11 222344567888 67799999999999999
Q ss_pred ECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEE
Q psy8891 64 DFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITS 142 (203)
Q Consensus 64 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~ 142 (203)
|+++++....+.....+..+.+.+.. +++..+++++.|+.|++||+++++.+..+..+ ..+.+
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 128 DTNTLQTADVFNFEETVYSHHMSPVS----------------TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSC----------------SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred eCCCCccceeccCCCceeeeEeecCC----------------CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 99999988888777778887776632 35568999999999999999999888887754 56888
Q ss_pred EEecCCcE-EEEeec--Ce--------------------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891 143 LDLSKGKY-YFVFAE--GF--------------------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYV 187 (203)
Q Consensus 143 ~~~~~~~~-~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~ 187 (203)
+.++++.. +++... +. .....+..+.++|++++|++++.|+.|++
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 88887643 333221 11 01123567789999999999999999999
Q ss_pred EeCCCceeeeeec
Q psy8891 188 WDCNTEQVEAVLK 200 (203)
Q Consensus 188 wd~~~~~~~~~~~ 200 (203)
||+++++....+.
T Consensus 272 wd~~~~~~~~~~~ 284 (408)
T 4a11_B 272 WNSSNGENTLVNY 284 (408)
T ss_dssp EETTTCCBCCCCC
T ss_pred EECCCCccceecc
Confidence 9999888765543
No 72
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1e-22 Score=159.23 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=124.9
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
.|++|+||+++|++|+.|+ +++||+...+.... .......+.+.++++.+ ++++.|++|++||+++++.+..+..+.
T Consensus 23 ~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~ 101 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA 101 (355)
T ss_dssp CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC
Confidence 4799999999999998765 78999886543322 11224456677777766 678889999999999999888887777
Q ss_pred eEEEEEecCCCce-----------------------------------EEE--ec-------------------------
Q psy8891 79 KITSLDLSKGTET-----------------------------------KFA--GS------------------------- 96 (203)
Q Consensus 79 ~v~~~~~~~~~~~-----------------------------------~~~--~~------------------------- 96 (203)
.|.++.++++... ++. +.
T Consensus 102 ~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 102 PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------------
T ss_pred ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 7777766543210 000 00
Q ss_pred --------------CCceEEEEcCCCCEEEEeeCCCe-EEEEECCCCceEEEEec--c-ceEEEEEecCCcEEEEeecCe
Q psy8891 97 --------------SCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDIEL--H-GKITSLDLSKGKYYFVFAEGF 158 (203)
Q Consensus 97 --------------~~~~~~~~~~~~~~l~s~s~d~~-i~iWd~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~~~~~~~ 158 (203)
.....+.|+|+|++|++++.|++ |++||+++++++..+.. + ..
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~------------------- 242 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD------------------- 242 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC-------------------
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc-------------------
Confidence 11124678999999999999998 99999999988877762 2 22
Q ss_pred eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
+..+.|+|++++|++|+.|++|++||++.+.
T Consensus 243 -----v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 243 -----VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp -----EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred -----EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 3455677899999999999999999997654
No 73
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=6.4e-24 Score=168.14 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=119.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCeEE-------e-cCcCceEEEEeC--------CCCEEEEecCCCeEEEEECCCc
Q psy8891 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKF-------A-GSSCNDLVTYDG--------AGTTIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-------~-~~~~~~~~~~~~--------~~~~l~s~~~D~~i~vwd~~~~ 68 (203)
+.+++..|++|+.|++|||||++.++... . +......+.|.| ++++|+|||.|++|||||++++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 45567789999999999999998764321 1 112234566765 6789999999999999999887
Q ss_pred eEE-EeeeeCCeEEEEEecCCCc-eEEEecCCceEEE-------------------------------------------
Q psy8891 69 EKV-RDIELHGKITSLDLSKGTE-TKFAGSSCNDLVT------------------------------------------- 103 (203)
Q Consensus 69 ~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------- 103 (203)
.++ ..+..+..+.+++|+|++. .++.+.....+..
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 655 4445678899999999765 3554444333222
Q ss_pred ------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEc--CCC
Q psy8891 104 ------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV--DDD 174 (203)
Q Consensus 104 ------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 174 (203)
+.+++..|++++.|+++++||+..++....+..+ ..+..+.+.++........ ......+.+ ++.
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP------SLLGACPHPRYMDY 330 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC------CSSCCEECSSCTTE
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC------cceeEEEccCCCCE
Confidence 2467888999999999999998876655444322 1222222222221111000 011223333 344
Q ss_pred EEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891 175 YVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203 (203)
Q Consensus 175 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 203 (203)
++++|+.|++|++||+.+++++..+.+|+
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 67889999999999999999888776553
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.4e-24 Score=184.89 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=117.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E----------ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F----------AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~----------~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~ 67 (203)
+++|+|+++.|+|||.|++||+||+.++... + .+......++++|++++|++|+.|++|+|||+.+
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 4688999999999999999999999865321 1 1112345678999999999999999999999976
Q ss_pred ceEEEe----------eee--------CCeEEEEEecCCC--------ceEEE-ecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891 68 EEKVRD----------IEL--------HGKITSLDLSKGT--------ETKFA-GSSCNDLVTYDGAGTTIISGHFDKKV 120 (203)
Q Consensus 68 ~~~~~~----------~~~--------~~~v~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~i 120 (203)
++.... +.. ......+....+. ...+. .......+.|+|+| +|++|+.|++|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 532100 000 0000000000000 00011 12223446688999 99999999999
Q ss_pred EEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE-----cCC---CEEEEecCCCcEEEEeC--
Q psy8891 121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV-----VDD---DYVAVGSIDGNIYVWDC-- 190 (203)
Q Consensus 121 ~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~l~s~s~d~~v~~wd~-- 190 (203)
++||++++..+........ . ..+...++.+.|+ ||+ .+|++|+.|++|++||+
T Consensus 599 ~lwd~~~~~~~~~~~~~~~------~-----------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREI------S-----------GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp EEEETTTTEEEEEEEGGGT------C-----------SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCeEEEEeehhHh------c-----------cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence 9999987665433221100 0 0011123445566 674 79999999999999999
Q ss_pred -CCceeeeeeccC
Q psy8891 191 -NTEQVEAVLKDM 202 (203)
Q Consensus 191 -~~~~~~~~~~~~ 202 (203)
.+|+...++.+|
T Consensus 662 ~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 662 ASGGKFDVQLMDI 674 (902)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCCcEEEEecCc
Confidence 889988888664
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=3.2e-22 Score=157.38 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=150.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC------eE--Ee-cCcCceEEEEeCC----C---CEEEEecCCCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE------TK--FA-GSSCNDLVTYDGA----G---TTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~------~~--~~-~~~~~~~~~~~~~----~---~~l~s~~~D~~i~vwd~ 65 (203)
+++|+| ..|++|+.|++|++||+.+.+ .. .. +......+.|.++ + ++|++++.|+.|++||+
T Consensus 21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~ 98 (397)
T 1sq9_A 21 SVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 98 (397)
T ss_dssp EEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred EEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence 688888 899999999999999998765 21 22 2223445678888 8 89999999999999999
Q ss_pred CCceE-----EEeeeeC------CeEEEEEec----CCCce-EEEecCC-------------------------------
Q psy8891 66 RAEEK-----VRDIELH------GKITSLDLS----KGTET-KFAGSSC------------------------------- 98 (203)
Q Consensus 66 ~~~~~-----~~~~~~~------~~v~~~~~~----~~~~~-~~~~~~~------------------------------- 98 (203)
..++. ...+..+ ..|.+++++ +++.. ++.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 88775 6666666 789999999 88877 6543221
Q ss_pred ----------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-------cceEEEEEecCCcEEEEee--c---
Q psy8891 99 ----------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-------HGKITSLDLSKGKYYFVFA--E--- 156 (203)
Q Consensus 99 ----------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~--~--- 156 (203)
...+.|+|++ .+++++.|+.|++||+++++++..+.. ...+.++.++++..+++.. .
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~ 257 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 257 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCC
Confidence 1135678889 999999999999999999999888887 5678999888764444322 1
Q ss_pred Cee-----------------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 157 GFK-----------------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 157 ~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+.. ....+..+.++|++++|++++.|+.|++||+++++++.+++
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 110 11234567889999999999999999999999999999988
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=1.3e-22 Score=157.13 Aligned_cols=192 Identities=15% Similarity=0.300 Sum_probs=138.9
Q ss_pred ceEEcCCCCEE-EEEeC---CCcEEEEeCCCCCeE----EecCcCceEEEEeCC---CCEEEEecCCCeEEEEECCCce-
Q psy8891 2 CAKFLGDPTKV-VSGSC---DRTLKIWDLRSTETK----FAGSSCNDLVTYDGA---GTTIISGHFDKKVRFWDFRAEE- 69 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~---D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~---~~~l~s~~~D~~i~vwd~~~~~- 69 (203)
+++|+|++..+ ++|+. |++|++||+.+.+.. ..+......+.|.|+ +++|++|+.|+.|++||+..++
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 102 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc
Confidence 68999999655 56666 999999999886642 122233455678887 6899999999999999999887
Q ss_pred EEEeeeeC-CeEEEEEe------cCCCceEEEecCCceE----------------------------EE----EcCCCCE
Q psy8891 70 KVRDIELH-GKITSLDL------SKGTETKFAGSSCNDL----------------------------VT----YDGAGTT 110 (203)
Q Consensus 70 ~~~~~~~~-~~v~~~~~------~~~~~~~~~~~~~~~~----------------------------~~----~~~~~~~ 110 (203)
.+..+..| +.|.++++ ++++..++.+.....+ +. |++++.+
T Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (357)
T 3i2n_A 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV 182 (357)
T ss_dssp CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE
T ss_pred cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE
Confidence 66666654 56888854 5666666655433221 12 5688999
Q ss_pred EEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC---CcEEEEeec--Ce---------------------eEEeee
Q psy8891 111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK---GKYYFVFAE--GF---------------------KVQCDF 164 (203)
Q Consensus 111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~--~~---------------------~~~~~~ 164 (203)
+++++.|+.|++||+++++..........+.++.+++ +...++... +. .....+
T Consensus 183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v 262 (357)
T 3i2n_A 183 VCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV 262 (357)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred EEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence 9999999999999999988876666677899999986 433333221 10 011234
Q ss_pred EEEEEEcCCC-EEEEecCCCcEEEEeCCCc
Q psy8891 165 TRAVFVVDDD-YVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 165 ~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~ 193 (203)
..+.++|++. +|++|+.|+.|++||++++
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 5677899988 8999999999999998754
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=2.5e-23 Score=166.64 Aligned_cols=189 Identities=12% Similarity=0.147 Sum_probs=129.4
Q ss_pred CceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCc---CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 1 MCAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF--AGSS---CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 1 ~~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~---~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
.+++|+| ++.+|+|||.|++|++||+++..... .... ....+.+++++++|++|+.||+|++||++.. .+..+
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~ 246 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL 246 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE
Confidence 3789998 68899999999999999998754321 1111 1234678899999999999999999999754 44455
Q ss_pred eeC-CeEEEEEecCCCceEE-EecCCce--------------------------EEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891 75 ELH-GKITSLDLSKGTETKF-AGSSCND--------------------------LVTYDGAGTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 75 ~~~-~~v~~~~~~~~~~~~~-~~~~~~~--------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~ 126 (203)
..| ..|.+++++|++..++ .++.... .+.|+|+|.+|++++.|++|++||++
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 544 6799999999876543 3332221 24688999999999999999999999
Q ss_pred CCceEEEEeccceE-------EEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEe-cCCCcEEEEeCCCceeeee
Q psy8891 127 AEEKVRDIELHGKI-------TSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG-SIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 127 ~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~v~~wd~~~~~~~~~ 198 (203)
+++....+..+..- ....+++.. ....+.+.+++..++.+ ..++.|++||.++++++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-------------NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSS-------------SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred CCccceEEecccccccccceeEEEEEcCCC-------------CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 98876665433210 000111110 11122233444443333 3456899999999999998
Q ss_pred eccCC
Q psy8891 199 LKDMH 203 (203)
Q Consensus 199 ~~~~~ 203 (203)
+.++|
T Consensus 394 l~~~~ 398 (435)
T 4e54_B 394 LYDPE 398 (435)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 87554
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=2e-22 Score=158.27 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=132.8
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE-Eec-C---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK-FAG-S---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 75 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~-~~~-~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~ 75 (203)
+++|+| ++..|++++.|++|++||+.+.... ... . .....+.++|+++.|++|+.|+.|++||++ ++.+..+.
T Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~ 201 (383)
T 3ei3_B 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK 201 (383)
T ss_dssp EEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec
Confidence 688999 7799999999999999999864332 111 1 223457889999999999999999999994 55666666
Q ss_pred eC-CeEEEEEecCCCc-eEEEecCCce--------------------------EEEEcC-CCCEEEEeeCCCeEEEEECC
Q psy8891 76 LH-GKITSLDLSKGTE-TKFAGSSCND--------------------------LVTYDG-AGTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 76 ~~-~~v~~~~~~~~~~-~~~~~~~~~~--------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~ 126 (203)
.| +.|.+++++|++. .++.++.... .+.|+| ++.+|++++.|++|++||++
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 54 6799999999887 5655443321 257889 99999999999999999999
Q ss_pred CCceEEEEecc------------------ceEEEEEecC--------CcEEEEee--cCee--------EEeeeEEEEEE
Q psy8891 127 AEEKVRDIELH------------------GKITSLDLSK--------GKYYFVFA--EGFK--------VQCDFTRAVFV 170 (203)
Q Consensus 127 ~~~~~~~~~~~------------------~~v~~~~~~~--------~~~~~~~~--~~~~--------~~~~~~~~~~~ 170 (203)
+++....+..+ ..+..+.+++ +..+.+.. .+.. ....+..+.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s 361 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFS 361 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEEC
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEe
Confidence 87765555422 1222233321 11111111 1111 01123345899
Q ss_pred cCCCEEEEecCCCcEEEEeCCC
Q psy8891 171 VDDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 171 ~~~~~l~s~s~d~~v~~wd~~~ 192 (203)
|++++|++|+ |+.|++||+++
T Consensus 362 ~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 362 PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTSSEEEEEE-TTEEEEEECC-
T ss_pred cCccEEEEec-CCcEEEEecCC
Confidence 9999999997 99999999874
No 79
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=1.9e-21 Score=152.88 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=152.4
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeC
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~ 77 (203)
+++|+|+++.+ ++++.|++|++||+.+++.. .........++++|+++.| ++++.|+.|++||+.+++.+..+..+
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 115 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence 68999999976 67889999999999886643 2223334557889999977 56667899999999999988888888
Q ss_pred CeEEEEEecCCCceEE-EecCCce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEE
Q psy8891 78 GKITSLDLSKGTETKF-AGSSCND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRD 133 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~ 133 (203)
..+..+++++++..++ .+...+. .+.|+|+++.| ++++.|++|++||+++++....
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 8899999999988764 4332222 24688899877 6778899999999999988888
Q ss_pred EeccceEEEEEecCCcE-EEEeec----Ce---------eE------EeeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891 134 IELHGKITSLDLSKGKY-YFVFAE----GF---------KV------QCDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT 192 (203)
Q Consensus 134 ~~~~~~v~~~~~~~~~~-~~~~~~----~~---------~~------~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~ 192 (203)
+.....+..+.++++.. ++.... +. .. ......+.++|++++| ++++.|+.|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 87777788888887643 333221 11 00 1123456788999877 6778999999999999
Q ss_pred ceeeeeeccC
Q psy8891 193 EQVEAVLKDM 202 (203)
Q Consensus 193 ~~~~~~~~~~ 202 (203)
++++++++.+
T Consensus 276 ~~~~~~~~~~ 285 (391)
T 1l0q_A 276 NTITATMAVG 285 (391)
T ss_dssp TEEEEEEECS
T ss_pred CcEEEEEECC
Confidence 9999888643
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.91 E-value=1.2e-22 Score=158.24 Aligned_cols=193 Identities=15% Similarity=0.226 Sum_probs=143.6
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE---EEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~~ 73 (203)
+++|+|+++.|++++.|++|++||+.+.+.. . ........+.+.|++++|++++.|+.|++||++.++. ...
T Consensus 57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 6889999999999999999999999876522 1 1222344577899999999999999999999987752 222
Q ss_pred e-e-eCCeEEEEEecCCCceEEEecCCc-----------------------------------------eEEEEcCCCCE
Q psy8891 74 I-E-LHGKITSLDLSKGTETKFAGSSCN-----------------------------------------DLVTYDGAGTT 110 (203)
Q Consensus 74 ~-~-~~~~v~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 110 (203)
+ . ....|.++++++++..++.+...+ ..+.|+|++..
T Consensus 137 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 137 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 216 (372)
T ss_dssp ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred eecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence 2 2 246799999999887766544221 12567788999
Q ss_pred EEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCe-------------------------------
Q psy8891 111 IISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGF------------------------------- 158 (203)
Q Consensus 111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~------------------------------- 158 (203)
|++++.|++|++||+++++++..+..+. .+.++.++++..+++.....
T Consensus 217 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 9999999999999999999988887664 68888887665544332110
Q ss_pred ---------------------------eEEeeeEEEEEE-cCC---CEEEEecCCCcEEEEeCCCce
Q psy8891 159 ---------------------------KVQCDFTRAVFV-VDD---DYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 159 ---------------------------~~~~~~~~~~~~-~~~---~~l~s~s~d~~v~~wd~~~~~ 194 (203)
.+...+..+.+. +++ .+|+||+.||.|++||+++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 011234556544 566 899999999999999987654
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=160.08 Aligned_cols=182 Identities=12% Similarity=0.244 Sum_probs=130.6
Q ss_pred CceEEcCCCC-EEEEEeCCCcEEEEeC----CCCC------eE--Eec-----------CcCceEEEEeCCCCEEEEecC
Q psy8891 1 MCAKFLGDPT-KVVSGSCDRTLKIWDL----RSTE------TK--FAG-----------SSCNDLVTYDGAGTTIISGHF 56 (203)
Q Consensus 1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl----~~~~------~~--~~~-----------~~~~~~~~~~~~~~~l~s~~~ 56 (203)
.+++|+|++. +|++|+.|++|++||+ .+++ .. ... ......+.|+|++++|++++.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 3789999999 9999999999999999 7655 11 111 113455788999999999999
Q ss_pred CCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891 57 DKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 135 (203)
Q Consensus 57 D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~ 135 (203)
|+.|++|| ..++.+..+..| ..|.++++ +|+++.|++++.|+.|++||+++++.+..+.
T Consensus 129 dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~-------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 129 NGELRLWN-KTGALLNVLNFHRAPIVSVKW-------------------NKDGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp TSCEEEEE-TTSCEEEEECCCCSCEEEEEE-------------------CTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCeEEEEe-CCCCeeeeccCCCccEEEEEE-------------------CCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 99999999 555666555543 45666554 5566789999999999999999988877766
Q ss_pred ccce----------------EEEEEecCCcEEEEeecCe-----------------eEEeeeEEEEEEcCCCEEEEecCC
Q psy8891 136 LHGK----------------ITSLDLSKGKYYFVFAEGF-----------------KVQCDFTRAVFVVDDDYVAVGSID 182 (203)
Q Consensus 136 ~~~~----------------v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~s~s~d 182 (203)
.+.. +..+.+.++..++...... .....+..+.++|++++|++++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC
Confidence 5432 4444444443333221110 012245677899999999999999
Q ss_pred CcEEEEeCCCceeeeeeccC
Q psy8891 183 GNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 183 ~~v~~wd~~~~~~~~~~~~~ 202 (203)
+.|++||+++++++..+++|
T Consensus 269 ~~i~i~d~~~~~~~~~~~~~ 288 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYGH 288 (425)
T ss_dssp SCEEEECSSSBSCSEEECCC
T ss_pred CEEEEEECCCCccceEecCC
Confidence 99999999999998888654
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.5e-23 Score=161.20 Aligned_cols=175 Identities=15% Similarity=0.238 Sum_probs=121.3
Q ss_pred CceEEcCC-CCEEEEEeCCCcEEEEeCCCCC------eEE------ecCcCceEEEEeCC-CCEEEEecCCCeEEEEECC
Q psy8891 1 MCAKFLGD-PTKVVSGSCDRTLKIWDLRSTE------TKF------AGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFR 66 (203)
Q Consensus 1 ~~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~------~~~------~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~ 66 (203)
.+++|+|+ +..|++|+.|++|++||+.+.+ ... .+......+.+.|+ +..|++++.|+.|++||++
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 36899998 8999999999999999998754 211 12223345778888 7899999999999999999
Q ss_pred CceEEEeeee-------CCeEEEEEecCCCc-eEEEecCCc----------------------------eEEEEcC-CCC
Q psy8891 67 AEEKVRDIEL-------HGKITSLDLSKGTE-TKFAGSSCN----------------------------DLVTYDG-AGT 109 (203)
Q Consensus 67 ~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~----------------------------~~~~~~~-~~~ 109 (203)
.++.+..+.. ...+.+++++|++. .++.+.... ..+.|+| ++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence 9988877765 35688888877653 222221110 1234555 555
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCCcEEEE
Q psy8891 110 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDGNIYVW 188 (203)
Q Consensus 110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~w 188 (203)
+|++++.|++|++||+++++++..+..+. ..+..+.++|++ .+|++++.|+.|++|
T Consensus 277 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------------~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESAEQLSQFPARG-----------------------NWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp CEEEEESSSEEEEECSSSCCEEEEEECSS-----------------------SCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred eEEEEeCCCCEEEeeCCCCccceeecCCC-----------------------CceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 66666666666666665555544443321 123456678888 899999999999999
Q ss_pred eCCCceeeee
Q psy8891 189 DCNTEQVEAV 198 (203)
Q Consensus 189 d~~~~~~~~~ 198 (203)
|+.+++....
T Consensus 334 ~~~~~~~~~~ 343 (416)
T 2pm9_A 334 TLQNLTNTLD 343 (416)
T ss_dssp ESCCCCCSSC
T ss_pred EccCCCCCcc
Confidence 9987765443
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.6e-23 Score=164.02 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=108.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE---EE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~ 72 (203)
+++|+|++++|++|+.|++|++||+.+.+ ... .+......+.+.|+++.|++|+.|+.|++||++.++. ..
T Consensus 60 ~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 60 CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp EEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence 68999999999999999999999998754 221 1222344567889999999999999999999988763 55
Q ss_pred eeee--CCeEEEEEecCCCceEEEecCCc----------------------------------------eEEEEcCCCCE
Q psy8891 73 DIEL--HGKITSLDLSKGTETKFAGSSCN----------------------------------------DLVTYDGAGTT 110 (203)
Q Consensus 73 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~ 110 (203)
.+.. ...|.+++++|++..++.++... ..+.|+|++++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence 5553 46799999999887776654332 23568899999
Q ss_pred EEEeeCCCeEEEEECCCCce----EEEEecc-ceEEEEEecCCcEEEE
Q psy8891 111 IISGHFDKKVRFWDFRAEEK----VRDIELH-GKITSLDLSKGKYYFV 153 (203)
Q Consensus 111 l~s~s~d~~i~iWd~~~~~~----~~~~~~~-~~v~~~~~~~~~~~~~ 153 (203)
|++++.|++|++||+++++. +..+..+ ..+.++.++++..+++
T Consensus 220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 99999999999999998876 5555554 3477887776655444
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=156.51 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=124.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCC-e--EEec-Cc----CceEEE----EeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTE-T--KFAG-SS----CNDLVT----YDGAGTTIISGHFDKKVRFWDFRAEEKV 71 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~-~--~~~~-~~----~~~~~~----~~~~~~~l~s~~~D~~i~vwd~~~~~~~ 71 (203)
+|+|++..|++|+.|++|++||+...+ . .... .. ....+. ++++++.|++++.|+.|++||++.++..
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR 203 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee
Confidence 578999999999999999999998754 2 2211 11 112233 5688999999999999999999999887
Q ss_pred EeeeeCCeEEEEEecC---CCceEEEecCCce----------------------------EEEEcCCCC-EEEEeeCCCe
Q psy8891 72 RDIELHGKITSLDLSK---GTETKFAGSSCND----------------------------LVTYDGAGT-TIISGHFDKK 119 (203)
Q Consensus 72 ~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~----------------------------~~~~~~~~~-~l~s~s~d~~ 119 (203)
........+.+++++| ++..++++...+. .+.|+|+++ +|++++.|+.
T Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence 7766778899999998 7776665543322 245778887 8999999999
Q ss_pred EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEE-EecCCCcEEEEeCCCcee
Q psy8891 120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA-VGSIDGNIYVWDCNTEQV 195 (203)
Q Consensus 120 i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~~~~~ 195 (203)
|++||++.+.........+..... ......+... ......+..+.++|++++|+ +|+.|+.|++||+.+.+.
T Consensus 284 i~iwd~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 284 LHLWKYEYPIQRSKKDSEGIEMGV--AGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEECCSCC--CCTTSCCCCC--CCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEeecCCCcccccccCCCCcccc--ccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999998865543222111100000 0000000000 00112355677889999888 899999999999987664
No 85
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-23 Score=171.61 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=108.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCeE------Eec-CcCceEEEEeCC------CCEEEEecCCCeEEEEECCCceEE--
Q psy8891 7 GDPTKVVSGSCDRTLKIWDLRSTETK------FAG-SSCNDLVTYDGA------GTTIISGHFDKKVRFWDFRAEEKV-- 71 (203)
Q Consensus 7 ~~~~~l~t~s~D~~v~lwdl~~~~~~------~~~-~~~~~~~~~~~~------~~~l~s~~~D~~i~vwd~~~~~~~-- 71 (203)
|+++.++|+|.|++|+|||+.+.+.. ..+ ......+.|.|+ +.+|+|++.|++|+|||+..++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 44455667889999999999765421 122 233445678875 579999999999999999765421
Q ss_pred ---------EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccc-e
Q psy8891 72 ---------RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHG-K 139 (203)
Q Consensus 72 ---------~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~-~ 139 (203)
.++..| +.|.+++ |+++ ..|++|+.|++|++||+++++ +...+..|. .
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~-------------------~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFD-------------------FLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEE-------------------ESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred cceeecCceEEEEcCCCCEEEEE-------------------ecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 122222 3344444 4443 379999999999999998663 334444442 2
Q ss_pred EE--EEEecCCc-EEEEeec--Ce-------------eEE--e---eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891 140 IT--SLDLSKGK-YYFVFAE--GF-------------KVQ--C---DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE 196 (203)
Q Consensus 140 v~--~~~~~~~~-~~~~~~~--~~-------------~~~--~---~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~ 196 (203)
|. ...++++. .+++... +. ... . .+..+.|+|+++.|++++.|++|++||+++++++
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 21 34444432 3333221 10 111 1 2356889999999999999999999999999988
Q ss_pred eeeccC
Q psy8891 197 AVLKDM 202 (203)
Q Consensus 197 ~~~~~~ 202 (203)
.++.+|
T Consensus 391 ~~l~gH 396 (524)
T 2j04_B 391 HPLVSR 396 (524)
T ss_dssp EEEEEC
T ss_pred eeeecC
Confidence 888765
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=1.7e-21 Score=155.85 Aligned_cols=171 Identities=27% Similarity=0.382 Sum_probs=111.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEE
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKIT 81 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~ 81 (203)
++.++++.|++|+.|++|++||+.+.+..... .+...+.++..+++.|++|+.||+|++||+.+++.+..+..| +.|.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 217 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence 45679999999999999999999887654322 122334455568899999999999999999999888777655 5577
Q ss_pred EEEecCCCceEEEecCCceEEE------------------------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891 82 SLDLSKGTETKFAGSSCNDLVT------------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~ 137 (203)
++++++ ..+++++..+.+.. ...++..|++++.|++|++||+++++++..+..+
T Consensus 218 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 218 HLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp EEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 777753 23333332222211 1224556666666666666666666665555433
Q ss_pred c-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 138 G-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 138 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
. .+.++.+ ++.+|++|+.|+.|++||+++++++.++++|
T Consensus 296 ~~~v~~~~~--------------------------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 296 KRGIACLQY--------------------------RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp SSCEEEEEE--------------------------ETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCcEEEEEe--------------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence 2 2332222 4556677777777777777766666666554
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=1.6e-21 Score=148.84 Aligned_cols=194 Identities=14% Similarity=0.230 Sum_probs=139.8
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC-C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-G 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~-~ 78 (203)
|++|+|++++|+|||.|++|++||+++++..... .+......+.+++..+++++.++.+++|+..... .+..+..| .
T Consensus 72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (318)
T 4ggc_A 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151 (318)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC
Confidence 6899999999999999999999999987653221 1223345566678899999999999999988764 34444443 5
Q ss_pred eEEEEEecCCCceEEEecCCceEEE---------------------------EcCCCC---EEEEeeCCCeEEEEECCCC
Q psy8891 79 KITSLDLSKGTETKFAGSSCNDLVT---------------------------YDGAGT---TIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~---~l~s~s~d~~i~iWd~~~~ 128 (203)
.+..+.+.+++..++.+.....+.. +.+++. .+++++.+++|++||.+..
T Consensus 152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence 6888888888887777665544433 334333 2357788999999999988
Q ss_pred ceEEEEeccceEEEEEecCCcEEEEeec----C----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891 129 EKVRDIELHGKITSLDLSKGKYYFVFAE----G----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVW 188 (203)
Q Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~w 188 (203)
...........+..+.+.+....++... + .. +...+..++|+|++++|+||+.|++|+||
T Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 8777766666676666655433322211 1 00 12246678899999999999999999999
Q ss_pred eCCCcee
Q psy8891 189 DCNTEQV 195 (203)
Q Consensus 189 d~~~~~~ 195 (203)
|+.+..|
T Consensus 312 d~~~~dP 318 (318)
T 4ggc_A 312 RCFELDP 318 (318)
T ss_dssp CCSCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=7.5e-23 Score=158.83 Aligned_cols=168 Identities=18% Similarity=0.327 Sum_probs=120.7
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEEe------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKFA------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
+++|+| ++..|++|+.|++|++||+++.+.... +......+.++|+++.|++++.|+.|++||++.++....+
T Consensus 120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 688999 999999999999999999988664322 2223445678899999999999999999999877543322
Q ss_pred e-----------------------------eCCeEEEEEecCCCceEEEecCCceE------------------------
Q psy8891 75 E-----------------------------LHGKITSLDLSKGTETKFAGSSCNDL------------------------ 101 (203)
Q Consensus 75 ~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 101 (203)
. ....|.+++++ +..++.+...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 277 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence 2 23456666666 3344444333322
Q ss_pred -------------EEEcCC--CCEEEEeeCCCeEEEEECCCCceEE----EEeccceEEEEEecCCcEEEEeecCeeEEe
Q psy8891 102 -------------VTYDGA--GTTIISGHFDKKVRFWDFRAEEKVR----DIELHGKITSLDLSKGKYYFVFAEGFKVQC 162 (203)
Q Consensus 102 -------------~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 162 (203)
+.|+|+ +++|++++.|+.|++||++++++.. .+..+. ...
T Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------------~~~ 336 (366)
T 3k26_A 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK---------------------CGA 336 (366)
T ss_dssp EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT---------------------CCS
T ss_pred eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc---------------------cCC
Confidence 345566 9999999999999999999876432 222220 011
Q ss_pred eeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~ 192 (203)
.+..+.++|++++|++|+.|+.|++||+.+
T Consensus 337 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 337 AIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 344566788999999999999999999863
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.6e-21 Score=146.44 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=138.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---e--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---T--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++|+|++..|++|+.|+.|++||+.... . ....+ ...+..+..+++.|++++.|+.|++|| .++....+..
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH-QGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-SSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-ccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 68899999999999999999999987532 1 12111 122223333678999999999999999 5555555554
Q ss_pred -CCeEEEEEecC-CCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891 77 -HGKITSLDLSK-GTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 132 (203)
Q Consensus 77 -~~~v~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~ 132 (203)
...+.++.+.+ +...++.+..... .+.|+|++. +++++.|+.|++||+++++++.
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~ 219 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR 219 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence 46788888877 6666665554332 345677777 9999999999999999999988
Q ss_pred EEecc-ceEEEEEecCCcEEEEeecCeeE-----------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 133 DIELH-GKITSLDLSKGKYYFVFAEGFKV-----------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 133 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
.+..+ ..+.++.++++..++.......+ ...+..+.++|+++ +++++.|+.|++||+++++
T Consensus 220 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 220 TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 88755 56889998887643332221100 11455677889887 6679999999999999888
Q ss_pred eeeeec
Q psy8891 195 VEAVLK 200 (203)
Q Consensus 195 ~~~~~~ 200 (203)
.+...+
T Consensus 299 ~~~~~~ 304 (313)
T 3odt_A 299 WASEDE 304 (313)
T ss_dssp CCC---
T ss_pred eeehhh
Confidence 776543
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=1.1e-21 Score=157.81 Aligned_cols=178 Identities=22% Similarity=0.374 Sum_probs=128.6
Q ss_pred ceEEc--CCCCEEEEEeCCCcEEEEeCCCCCeE------------------------EecCcCceEEEEeCCCCEEEEec
Q psy8891 2 CAKFL--GDPTKVVSGSCDRTLKIWDLRSTETK------------------------FAGSSCNDLVTYDGAGTTIISGH 55 (203)
Q Consensus 2 ~~~~~--~~~~~l~t~s~D~~v~lwdl~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~s~~ 55 (203)
+++|+ +++..+++|+.|++|++||+.+.... ........+..++++++.+++|+
T Consensus 208 ~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 208 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 45666 68889999999999999999864321 11112223445677889999999
Q ss_pred CCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891 56 FDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 56 ~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~ 134 (203)
.|+.|++||+++++.+..+..| ..|.++. |+|++..+++++.|++|++||+++++++..+
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTI-------------------YDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEE-------------------EETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCEEEEE-------------------EcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 9999999999999888777644 4466554 4556678999999999999999988888887
Q ss_pred ecc-ceEEEEEecCCcEEEEeecCeeE-----------E----eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 135 ELH-GKITSLDLSKGKYYFVFAEGFKV-----------Q----CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 135 ~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
..+ ..+..+.+++.........+... . .......+.+++.++++|+ |+.|++||++++++++.
T Consensus 349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 655 44777777643222222222100 0 0123457889999999998 99999999999999986
Q ss_pred e
Q psy8891 199 L 199 (203)
Q Consensus 199 ~ 199 (203)
+
T Consensus 428 ~ 428 (464)
T 3v7d_B 428 N 428 (464)
T ss_dssp C
T ss_pred h
Confidence 3
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-21 Score=147.06 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=139.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---eEEEeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---EKVRDIE 75 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~---~~~~~~~ 75 (203)
+++| |++.+|++|+.||+|++||+.+.+.. ..+......+.++|+++.|++++.|+.|++||+... +.+..+.
T Consensus 23 ~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~ 101 (313)
T 3odt_A 23 DVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI 101 (313)
T ss_dssp EEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC
T ss_pred EEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh
Confidence 6788 99999999999999999999875532 223333456788999999999999999999998764 3344444
Q ss_pred e-CCeEEEEEecCCCceEEEecCCceE---------------------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891 76 L-HGKITSLDLSKGTETKFAGSSCNDL---------------------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR 132 (203)
Q Consensus 76 ~-~~~v~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~ 132 (203)
. ...|.++.+. +..++.+.....+ +.|.+ ++..+++++.|+.|++||. ++...
T Consensus 102 ~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~ 177 (313)
T 3odt_A 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIK 177 (313)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEE
T ss_pred hcccCEEEEEec--CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEE
Confidence 3 3568888873 3455544433322 33444 8899999999999999994 44555
Q ss_pred EEec--cceEEEEEecCCcEEEEeecCee-----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891 133 DIEL--HGKITSLDLSKGKYYFVFAEGFK-----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 133 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~ 193 (203)
.+.. ...+..+.++++..++....... ....+..+.++|++ .|++++.|+.|++||++++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 5553 35578887776655332221110 11235667888888 6899999999999999999
Q ss_pred eeeeeeccC
Q psy8891 194 QVEAVLKDM 202 (203)
Q Consensus 194 ~~~~~~~~~ 202 (203)
+++.+++.|
T Consensus 257 ~~~~~~~~~ 265 (313)
T 3odt_A 257 SLKQVITLP 265 (313)
T ss_dssp CEEEEEECS
T ss_pred ceeEEEecc
Confidence 999988765
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=6.1e-21 Score=152.03 Aligned_cols=197 Identities=15% Similarity=0.270 Sum_probs=138.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++||+++ .|+.| .|++|+|||+.+++.. +... ..+..++|+|++++|++|+.|++|+|||+++++.++.+..
T Consensus 110 ~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 110 LVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp CEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 47888764 66665 5999999999987753 2221 2245678999999999999999999999999999888876
Q ss_pred C-CeEEEEEecCCCceEEEecCC------------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce-
Q psy8891 77 H-GKITSLDLSKGTETKFAGSSC------------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK- 130 (203)
Q Consensus 77 ~-~~v~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~- 130 (203)
| ..+.++++++ ..++.+... .....|.|++.++++++.|+.|++||..+++.
T Consensus 188 h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 188 HSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp CSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred CCCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 5 4466666543 333333222 12356788999999999999999999987653
Q ss_pred ---EEEEec-cceEEEEEecCCc-EEEEeecC--------------e-----eEEeeeEEEEEEcCCCEEEEec--CCCc
Q psy8891 131 ---VRDIEL-HGKITSLDLSKGK-YYFVFAEG--------------F-----KVQCDFTRAVFVVDDDYVAVGS--IDGN 184 (203)
Q Consensus 131 ---~~~~~~-~~~v~~~~~~~~~-~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~l~s~s--~d~~ 184 (203)
+..... ...|..+.+++.. .++....+ . .....+....+.++++.+++++ .|+.
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE
Confidence 223322 2457777766532 22222111 0 0112345677889999887754 7999
Q ss_pred EEEEeCCCceeeeeeccC
Q psy8891 185 IYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 185 v~~wd~~~~~~~~~~~~~ 202 (203)
|++||+.+++++.++++|
T Consensus 346 I~iwd~~~~~~v~~l~gH 363 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGH 363 (420)
T ss_dssp EEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEEEEEcCC
Confidence 999999999999999887
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.90 E-value=4.2e-22 Score=156.71 Aligned_cols=184 Identities=16% Similarity=0.225 Sum_probs=130.3
Q ss_pred ceEEc----CCCCE-EEEEeCCCcEEEEeCCC------CCe-------EEe--------cCcCceEEEEeCCCCEEEEec
Q psy8891 2 CAKFL----GDPTK-VVSGSCDRTLKIWDLRS------TET-------KFA--------GSSCNDLVTYDGAGTTIISGH 55 (203)
Q Consensus 2 ~~~~~----~~~~~-l~t~s~D~~v~lwdl~~------~~~-------~~~--------~~~~~~~~~~~~~~~~l~s~~ 55 (203)
+++|+ |++.. |++|+.|+.|++||+.. .+. .+. .......+.+.|++ .|++++
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~ 204 (397)
T 1sq9_A 126 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF 204 (397)
T ss_dssp EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred EEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence 67899 99999 99999999999999976 332 221 12224557889999 999999
Q ss_pred CCCeEEEEECCCceEEEeeee-------CCeEEEEEecCCCceEEEecCC---c--------------------------
Q psy8891 56 FDKKVRFWDFRAEEKVRDIEL-------HGKITSLDLSKGTETKFAGSSC---N-------------------------- 99 (203)
Q Consensus 56 ~D~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~---~-------------------------- 99 (203)
.|+.|++||+++++.+..+.. ...+.++++++++..++.+... .
T Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 284 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence 999999999999998888876 5779999999887665544322 1
Q ss_pred ----------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe------ccceEEEEEecCCcEEEEeecCeeEEee
Q psy8891 100 ----------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE------LHGKITSLDLSKGKYYFVFAEGFKVQCD 163 (203)
Q Consensus 100 ----------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (203)
..+.|+|++++|++++.|++|++||+++++++..+. .+..- ...+.. .........
T Consensus 285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~g~~----~~~~~~~~~ 356 (397)
T 1sq9_A 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED----ILAVDE----HGDSLAEPG 356 (397)
T ss_dssp -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG----CCCBCT----TSCBCSSCC
T ss_pred ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh----hhcccc----ccccccCCc
Confidence 235678889999999999999999999988877776 22000 000000 000000123
Q ss_pred eEEEEEEcCC----------CEEEEecCCCcEEEEeCCCce
Q psy8891 164 FTRAVFVVDD----------DYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 164 ~~~~~~~~~~----------~~l~s~s~d~~v~~wd~~~~~ 194 (203)
+..+.++|++ .+|++|+.|+.|++||+++|+
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 4556777887 799999999999999998764
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.8e-21 Score=154.16 Aligned_cols=192 Identities=16% Similarity=0.248 Sum_probs=142.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK 79 (203)
Q Consensus 5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~ 79 (203)
+.+++..+++++.|++|++||+.+++... .. ......+.|+|++++|++|+.||.|++||+.+++.+..+..| +.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 178 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR 178 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc
Confidence 34445678999999999999999876432 22 223456789999999999999999999999999888777654 56
Q ss_pred EEEEEecCCCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891 80 ITSLDLSKGTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 135 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~ 135 (203)
|.++++.+ ..++.+...+ ..+.|+|++.+|++++.|++|++||++++++...+.
T Consensus 179 v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 179 VGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT 256 (401)
T ss_dssp EEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred eEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence 88888743 3444333221 235788999999999999999999999998887776
Q ss_pred cc-ceEEEEEecCC-cEEEEeec----Cee---------------EEeeeEEEEEEcCCCEEEE--ecCCCcEEEEeCCC
Q psy8891 136 LH-GKITSLDLSKG-KYYFVFAE----GFK---------------VQCDFTRAVFVVDDDYVAV--GSIDGNIYVWDCNT 192 (203)
Q Consensus 136 ~~-~~v~~~~~~~~-~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~l~s--~s~d~~v~~wd~~~ 192 (203)
.+ ..+.++.+++. ..+++... +.. ....+..+.++|++++|++ |+.|+.|++||+.+
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 44 45888888774 34444321 110 1123567788999999999 55899999999998
Q ss_pred ceeeee
Q psy8891 193 EQVEAV 198 (203)
Q Consensus 193 ~~~~~~ 198 (203)
++....
T Consensus 337 ~~~~~~ 342 (401)
T 4aez_A 337 SGLTKQ 342 (401)
T ss_dssp TEEEEE
T ss_pred ccceeE
Confidence 766665
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-22 Score=160.01 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=133.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEE--ecC----------------------------------------
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKF--AGS---------------------------------------- 36 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~--~~~---------------------------------------- 36 (203)
|++|++||+.|+++ .++.|++||+.+++ ... ...
T Consensus 9 ~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 9 NLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 68899999966665 57899999988766 211 100
Q ss_pred ---------------cCceEEEEeCCCCEE-EEecCCCeEEEEECC--CceEEEeee---eCCeEEEEEecCCCceEEEe
Q psy8891 37 ---------------SCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR--AEEKVRDIE---LHGKITSLDLSKGTETKFAG 95 (203)
Q Consensus 37 ---------------~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~ 95 (203)
.....+.|+|+++.| ++|+.|++|+|||+. .++.+..+. ....|.+++++|++..++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 023446789999986 999999999999999 777777664 34679999999998877765
Q ss_pred cCCc---------------------------eEEEEcCC---CCEEEEeeCCCeEEEEECCCCceEEEEe-ccceEEEEE
Q psy8891 96 SSCN---------------------------DLVTYDGA---GTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKITSLD 144 (203)
Q Consensus 96 ~~~~---------------------------~~~~~~~~---~~~l~s~s~d~~i~iWd~~~~~~~~~~~-~~~~v~~~~ 144 (203)
.... ..+.|+|+ +++|++++.|++|++||+++++.+..+. .+.
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~------ 241 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK------ 241 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS------
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC------
Confidence 4311 13578899 8899999999999999999887765532 121
Q ss_pred ecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 145 LSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
..+..+.|+ ++++|++|+.|++|++||+.+++++.+++
T Consensus 242 -----------------~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 242 -----------------HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp -----------------SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred -----------------CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 123455677 88999999999999999999999998876
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.4e-22 Score=171.14 Aligned_cols=193 Identities=17% Similarity=0.247 Sum_probs=143.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCce--EEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEE--KVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~--~~~ 72 (203)
+++|+|++++|++|+.||+|++||+.... .. .. +......+.|.++ ++.|++|+.||+|++||++.++ .+.
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 93 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc
Confidence 68899999999999999999999997432 21 22 2223445677776 8899999999999999999886 444
Q ss_pred eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcC-------------CCCEE
Q psy8891 73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDG-------------AGTTI 111 (203)
Q Consensus 73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~-------------~~~~l 111 (203)
.+.. ...|.+++++|+ +..++.+...+. .+.|+| ++..+
T Consensus 94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l 173 (753)
T 3jro_A 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (753)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence 4443 467999999998 777766554432 245777 58899
Q ss_pred EEeeCCCeEEEEECCCCc----eEEEEecc-ceEEEEEecCC---cEEEEeecC--e-e--------------------E
Q psy8891 112 ISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSKG---KYYFVFAEG--F-K--------------------V 160 (203)
Q Consensus 112 ~s~s~d~~i~iWd~~~~~----~~~~~~~~-~~v~~~~~~~~---~~~~~~~~~--~-~--------------------~ 160 (203)
++++.|++|++||++++. +...+..+ ..|.++.++++ ...++.... . . .
T Consensus 174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 253 (753)
T 3jro_A 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (753)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence 999999999999998774 33344433 45899999887 555554321 0 0 1
Q ss_pred EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
...+..+.++|++++|++|+.||.|++||++++.
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 1234567899999999999999999999998543
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.7e-22 Score=160.41 Aligned_cols=199 Identities=13% Similarity=0.159 Sum_probs=139.7
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCC--CCCeE--E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE-
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLR--STETK--F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR- 72 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~--~~~~~--~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~- 72 (203)
+++|+|+++.| ++|+.|++|++||+. +++.. . ........+.|+|+++.|++|+.|+.|++||+..++...
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF 186 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc
Confidence 68899999996 999999999999998 55432 1 122334557899999999999999999999998776443
Q ss_pred ---eeeeC-CeEEEEEecCC---CceEEEecCCce------------------------EEEEcCCCCEEEEeeCCCeEE
Q psy8891 73 ---DIELH-GKITSLDLSKG---TETKFAGSSCND------------------------LVTYDGAGTTIISGHFDKKVR 121 (203)
Q Consensus 73 ---~~~~~-~~v~~~~~~~~---~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~d~~i~ 121 (203)
.+..| +.|.+++++|+ +..++.+..... .+.|+ ++++|++++.|++|+
T Consensus 187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~ 265 (450)
T 2vdu_B 187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF 265 (450)
T ss_dssp CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence 44443 67999999998 766665543322 25677 899999999999999
Q ss_pred EEECCCCceEEEEeccceEEEEEecC--CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEEEeC--CCc---
Q psy8891 122 FWDFRAEEKVRDIELHGKITSLDLSK--GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDC--NTE--- 193 (203)
Q Consensus 122 iWd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~--~~~--- 193 (203)
+||+++++++..+..+..+..+.... ....+...........+..+.++|++++|++++ .|+.|++||+ .++
T Consensus 266 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l 345 (450)
T 2vdu_B 266 AWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL 345 (450)
T ss_dssp EEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE
T ss_pred EEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce
Confidence 99999999888776543211111100 000000000001122345677889999999998 8999999999 565
Q ss_pred eeeeeecc
Q psy8891 194 QVEAVLKD 201 (203)
Q Consensus 194 ~~~~~~~~ 201 (203)
+++.+++.
T Consensus 346 ~~~~~~~~ 353 (450)
T 2vdu_B 346 ALKQIITF 353 (450)
T ss_dssp EEEEEEEC
T ss_pred eeccEecc
Confidence 66666654
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=9e-21 Score=149.09 Aligned_cols=196 Identities=17% Similarity=0.188 Sum_probs=132.8
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeC---CCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDG---AGTTIISGHFDKKVRFWDFRAEEKVRDIE 75 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~---~~~~l~s~~~D~~i~vwd~~~~~~~~~~~ 75 (203)
+++|+| ++..|++++.|++|++||+.+.+.. .........+.+.+ ++..+++++.|+.|++||++.++.+..+.
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 678999 7789999999999999999886643 22223333455555 45599999999999999999988877776
Q ss_pred eC-CeEEEEEecCCCce-EEEecCCc---------------------------------------eEEEEcCCCCEEEEe
Q psy8891 76 LH-GKITSLDLSKGTET-KFAGSSCN---------------------------------------DLVTYDGAGTTIISG 114 (203)
Q Consensus 76 ~~-~~v~~~~~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~~~~l~s~ 114 (203)
.+ +.|.+++++|++.. ++.+...+ ..+.|+|++.+|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 44 67999999998875 44443221 235688899999999
Q ss_pred eCCCeEEEEECCCCceEEEEecc---------------------------ceEEEEEecCCcEEEEeecCeeEEeeeEEE
Q psy8891 115 HFDKKVRFWDFRAEEKVRDIELH---------------------------GKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167 (203)
Q Consensus 115 s~d~~i~iWd~~~~~~~~~~~~~---------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
+.|+.|++||+++++.......+ +.+.-+.+.......... .....+..+
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~v~~~ 340 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK---GHYKTVDCC 340 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec---cCCCeEEEE
Confidence 99999999999987653322110 011111111111110000 012345678
Q ss_pred EEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.++|++++|++|+.|+.|++||+++++++...+
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 899999999999999999999999998877653
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=6.2e-21 Score=169.59 Aligned_cols=201 Identities=18% Similarity=0.261 Sum_probs=153.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++|+|++++|++|+.|++|++||+.+++... . +......+.+.+ ++..+++|+.|++|++||+++++.+..+..
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence 68999999999999999999999999876532 2 223344567777 456899999999999999999988877765
Q ss_pred C-CeEEEEEecCCCceEEEecCCce-------------------------------------------------------
Q psy8891 77 H-GKITSLDLSKGTETKFAGSSCND------------------------------------------------------- 100 (203)
Q Consensus 77 ~-~~v~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 100 (203)
| +.|.+++++|++..+++++..+.
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 5 57899999988876665443222
Q ss_pred -----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeec
Q psy8891 101 -----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAE 156 (203)
Q Consensus 101 -----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~ 156 (203)
.+.|+|++..+++++.|+.|++||+.++..+..+..+ ..+.++.++++...++...
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence 2346677888999999999999999988887777655 4588888877654443321
Q ss_pred C--e-eE----------------------------------------------------EeeeEEEEEEcCCCEEEEecC
Q psy8891 157 G--F-KV----------------------------------------------------QCDFTRAVFVVDDDYVAVGSI 181 (203)
Q Consensus 157 ~--~-~~----------------------------------------------------~~~~~~~~~~~~~~~l~s~s~ 181 (203)
. . .+ ...+..++++|+++++++|+.
T Consensus 902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence 1 0 00 012456778999999999999
Q ss_pred CCcEEEEeCCCceeeeeeccC
Q psy8891 182 DGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 182 d~~v~~wd~~~~~~~~~~~~~ 202 (203)
||.|++||+.+++.+..+++|
T Consensus 982 ~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp TSCCEEEETTTTSCEEECCCC
T ss_pred CCCEEEEEcCCCceeeecccC
Confidence 999999999999998887765
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=6.1e-21 Score=152.88 Aligned_cols=195 Identities=21% Similarity=0.318 Sum_probs=136.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEE
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKIT 81 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~ 81 (203)
++++++..|+||+.|++|++||+.+++...... +...+.+...+++.|++|+.|++|++||+.+++.+..+..| ..|.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 203 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE
Confidence 467789999999999999999999877543222 11222233334679999999999999999999988887755 5688
Q ss_pred EEEecCCCceEEEecCCceEEEE---------------------cCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ce
Q psy8891 82 SLDLSKGTETKFAGSSCNDLVTY---------------------DGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK 139 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~ 139 (203)
++.+.+ ..+++++..+.+..| ..++..+++++.|++|++||+++++++..+..+ ..
T Consensus 204 ~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 204 CMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281 (445)
T ss_dssp EEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred EEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence 888753 445555544433322 235778999999999999999999888887755 45
Q ss_pred EEEEEecCCcEEEEee-cCee---------EEee-----eEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891 140 ITSLDLSKGKYYFVFA-EGFK---------VQCD-----FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 140 v~~~~~~~~~~~~~~~-~~~~---------~~~~-----~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
+.++.+.. ..++... .+.. .... .....+.+++++|++|+.|+.|++||+++++++.++++
T Consensus 282 v~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 282 VYSLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp EEEEEECS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred eEEEEECC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 77777733 2222211 1110 0000 01123445788999999999999999999999998875
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.7e-22 Score=160.32 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=109.8
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCc-----CceEEEEeCCCCEEEEecCCCeEEEEECCCce------
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSS-----CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE------ 69 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~------ 69 (203)
.+|+|||||++|++++.||+|++||.+.......+.. ....++|+|+++.|++|+.||+|+|||+..+.
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 3789999999999999999999999654111112111 24568899999999999999999999998874
Q ss_pred -EEEeeeeC-----CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEe-ccce
Q psy8891 70 -KVRDIELH-----GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIE-LHGK 139 (203)
Q Consensus 70 -~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~-~~~~ 139 (203)
.+.++..+ ..|.++ .|+|+| +++++.|++|++||+..+.. .+++. .+.
T Consensus 169 i~l~ti~~~~~gh~~~V~sV-------------------awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~- 226 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHI-------------------VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR- 226 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEE-------------------EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-
T ss_pred eeeeeeecccccccccEEEE-------------------EEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc-
Confidence 24454322 245554 466677 78888999999999987663 22332 211
Q ss_pred EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891 140 ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM 202 (203)
Q Consensus 140 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 202 (203)
..+..+.|+ ++.|++++ +++|++||..+++......+|
T Consensus 227 ----------------------~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh 264 (588)
T 2j04_A 227 ----------------------RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS 264 (588)
T ss_dssp ----------------------SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC
T ss_pred ----------------------CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC
Confidence 012344565 57899987 699999999988774443354
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.9e-22 Score=153.49 Aligned_cols=154 Identities=6% Similarity=0.011 Sum_probs=113.3
Q ss_pred ceEEcC--CCCEEEEEeCCCcEEEEeCCCCCeEEe---c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE-Eee
Q psy8891 2 CAKFLG--DPTKVVSGSCDRTLKIWDLRSTETKFA---G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDI 74 (203)
Q Consensus 2 ~~~~~~--~~~~l~t~s~D~~v~lwdl~~~~~~~~---~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~-~~~ 74 (203)
+++|+| ++..++||+.|++|++||+++++.... . ......+.++|++.+|++|+.|+.|++||+++++.+ ..+
T Consensus 130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209 (343)
T ss_dssp EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence 678999 999999999999999999998765321 1 122456789999999999999999999999998866 566
Q ss_pred ee--CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEE
Q psy8891 75 EL--HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYF 152 (203)
Q Consensus 75 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 152 (203)
.. .++|.+++|+ |+|.+|++++. ++|++||+++++....+..... ....+
T Consensus 210 ~~~h~~~v~~l~fs-------------------~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~------- 261 (343)
T 3lrv_A 210 PVDEEAKIKEVKFA-------------------DNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTI-PEFKT------- 261 (343)
T ss_dssp CCCTTSCEEEEEEC-------------------TTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-------------
T ss_pred eccCCCCEEEEEEe-------------------CCCCEEEEEeC-CeEEEEEcCCCCcceeeccccc-ccccc-------
Confidence 55 3567666554 56678999995 5999999998776443321100 00000
Q ss_pred EeecCeeEEeeeEEEEEEcCCCEEEEecC-CCcEEEEeCCCc
Q psy8891 153 VFAEGFKVQCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCNTE 193 (203)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~~~ 193 (203)
.-..+.|+|++++|++++. |+.+++|++.++
T Consensus 262 ----------~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 262 ----------GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ----------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ----------cceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0024678899999999998 999999998654
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-21 Score=151.94 Aligned_cols=153 Identities=7% Similarity=0.023 Sum_probs=111.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCC---------CCeE--Ee--cCcCceEEEEeC--CCCEEEEecCCCeEEEEECC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---------TETK--FA--GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFR 66 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~---------~~~~--~~--~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~ 66 (203)
++.|+|+ ++|||.|++|++|+... .+.. .. +......+.+.| +++++++|+.|++|++||++
T Consensus 81 ~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 81 TGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp TTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred eeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 3556777 99999999999997763 3211 11 112234567788 89999999999999999999
Q ss_pred CceEEEeeeeC--CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEec-cceEEE
Q psy8891 67 AEEKVRDIELH--GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDIEL-HGKITS 142 (203)
Q Consensus 67 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~-~~~~~-~~~v~~ 142 (203)
+++.......+ ..+.+ +.|+|+|.+|++|+.|++|++||+++++.. ..+.. |..
T Consensus 158 ~~~~~~~~~~~~~~~i~~-------------------~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~--- 215 (343)
T 3lrv_A 158 DDSQYIVHSAKSDVEYSS-------------------GVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA--- 215 (343)
T ss_dssp SSCEEEEECCCSSCCCCE-------------------EEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS---
T ss_pred CCcEEEEEecCCCCceEE-------------------EEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC---
Confidence 88875443221 22333 456677889999999999999999998876 55554 211
Q ss_pred EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.+..+.|+|++.+|++++ |++|++||+++++.+.+++
T Consensus 216 --------------------~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 216 --------------------KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp --------------------CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred --------------------CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 234556778999999999 5599999999988766554
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=5.3e-20 Score=144.61 Aligned_cols=193 Identities=10% Similarity=0.105 Sum_probs=148.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCCeEEEEEec
Q psy8891 10 TKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS 86 (203)
Q Consensus 10 ~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 86 (203)
..+++++.|++|++||+.+++.. ...+.....+.++|+++.| ++++.|++|++||+.+++.+..+..+..+..++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 46889999999999999886643 2233334557889999876 78889999999999999999888888899999999
Q ss_pred CCCceEEEec-CCce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEeccceEEE
Q psy8891 87 KGTETKFAGS-SCND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITS 142 (203)
Q Consensus 87 ~~~~~~~~~~-~~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~ 142 (203)
|++..++... .... .+.|+|+++.| ++++.|++|++||+.+++.+..+..+..+..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence 9988775433 2222 24688999877 6888899999999999998888887777888
Q ss_pred EEecCCcE-EEEeecC--ee---------E------EeeeEEEEEEcCCCEEEEec---CCCcEEEEeCCCceeeeeecc
Q psy8891 143 LDLSKGKY-YFVFAEG--FK---------V------QCDFTRAVFVVDDDYVAVGS---IDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 143 ~~~~~~~~-~~~~~~~--~~---------~------~~~~~~~~~~~~~~~l~s~s---~d~~v~~wd~~~~~~~~~~~~ 201 (203)
+.++++.. +++.... .. . ......+.++|++++|++++ .++.|++||+++++++..++.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 88887653 3333211 10 0 11234567889999998888 699999999999999888865
Q ss_pred C
Q psy8891 202 M 202 (203)
Q Consensus 202 ~ 202 (203)
+
T Consensus 243 ~ 243 (391)
T 1l0q_A 243 G 243 (391)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.88 E-value=1.9e-20 Score=154.75 Aligned_cols=197 Identities=17% Similarity=0.211 Sum_probs=131.9
Q ss_pred ceEEcCC-CCEEEEEeCCCcEEEEeCCCCCeEEec-------CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891 2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTETKFAG-------SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~~~~~-------~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~ 73 (203)
+++|+|+ +.+|++++.|++|++||+.+++..... ......+.+. +++.|++++.|+.|++||+++++.+..
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 6889999 999999999999999999887654322 2223446777 889999999999999999998887766
Q ss_pred eeeC-----CeEEEEEecCCCceEEEecCCceEEEEc-------------------------------------------
Q psy8891 74 IELH-----GKITSLDLSKGTETKFAGSSCNDLVTYD------------------------------------------- 105 (203)
Q Consensus 74 ~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 105 (203)
+..+ ..+..+.+. ++..++.+...+.+..|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~ 368 (615)
T 1pgu_A 290 WTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH 368 (615)
T ss_dssp EECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE
T ss_pred EcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc
Confidence 6544 334444442 333333322222211111
Q ss_pred ------------CCCCEEEEeeCCCeEEEEECC----------------------------------CCceEEEEeccce
Q psy8891 106 ------------GAGTTIISGHFDKKVRFWDFR----------------------------------AEEKVRDIELHGK 139 (203)
Q Consensus 106 ------------~~~~~l~s~s~d~~i~iWd~~----------------------------------~~~~~~~~~~~~~ 139 (203)
+++..|++++.|++|++||+. +++.+..+.....
T Consensus 369 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (615)
T 1pgu_A 369 QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 448 (615)
T ss_dssp CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCC
Confidence 225566777777777777654 3344444444455
Q ss_pred EEEEEecCCcEEEEeec--Ce-----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 140 ITSLDLSKGKYYFVFAE--GF-----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 140 v~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+.++.++ +..++.... +. .....+..+.++|++++|++|+.|+.|++||+.+++++..++
T Consensus 449 ~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 527 (615)
T 1pgu_A 449 GSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 527 (615)
T ss_dssp EEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred ceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee
Confidence 6666665 333333221 11 012245678899999999999999999999999999999887
Q ss_pred c
Q psy8891 201 D 201 (203)
Q Consensus 201 ~ 201 (203)
+
T Consensus 528 ~ 528 (615)
T 1pgu_A 528 A 528 (615)
T ss_dssp C
T ss_pred c
Confidence 6
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.88 E-value=1.2e-20 Score=150.93 Aligned_cols=169 Identities=20% Similarity=0.398 Sum_probs=122.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE---Eeeee-CCeE
Q psy8891 6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV---RDIEL-HGKI 80 (203)
Q Consensus 6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~---~~~~~-~~~v 80 (203)
..++..|++|+.||+|++||+.+++..... .+...+.....+++.+++|+.|++|++||++.++.. ..+.. .+.|
T Consensus 180 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 180 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 348899999999999999999987654321 122233444456779999999999999999887654 33333 3568
Q ss_pred EEEEecCCCceEEEecCCceEEEEc---------------------CCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-
Q psy8891 81 TSLDLSKGTETKFAGSSCNDLVTYD---------------------GAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG- 138 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~- 138 (203)
.++++ ++..++.++..+.+..|+ .++..+++++.|++|++||+++++++..+..+.
T Consensus 260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 88877 445666655544443332 246799999999999999999998887776442
Q ss_pred eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce---------eeeeeccC
Q psy8891 139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ---------VEAVLKDM 202 (203)
Q Consensus 139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~---------~~~~~~~~ 202 (203)
.+.++ . .++.+|++|+.||.|++||+.+++ ++.++.+|
T Consensus 338 ~v~~~------------------------~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h 384 (435)
T 1p22_A 338 LVRCI------------------------R--FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384 (435)
T ss_dssp CEEEE------------------------E--CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred cEEEE------------------------E--ecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence 23222 2 267899999999999999998776 77777655
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.88 E-value=4.4e-21 Score=151.82 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=115.6
Q ss_pred eEEcCCCCE-EEEEeCCCcEEEEeCCCCCe------EE-ecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc-----
Q psy8891 3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTET------KF-AGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE----- 68 (203)
Q Consensus 3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~------~~-~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~----- 68 (203)
++++|+... +++++.||.|++||+..... .+ .+......+.|+| ++++|++|+.|++|+|||+..+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 566777654 44689999999999965311 11 1223345577888 8899999999999999999887
Q ss_pred --eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEE--eccceEEE
Q psy8891 69 --EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDI--ELHGKITS 142 (203)
Q Consensus 69 --~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~--~~~~~v~~ 142 (203)
+.+..+..| ..|.+++++ |++ .+|++++.|++|++||+++++.+..+ ..+..
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~-------------------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--- 177 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWH-------------------PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD--- 177 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEEC-------------------SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS---
T ss_pred cCCceEEecCCCCeEEEEEEC-------------------cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC---
Confidence 344455443 456665555 454 58999999999999999998877666 22211
Q ss_pred EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
.+..+.++|++.+|++++.|+.|++||+++++++.++
T Consensus 178 --------------------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 178 --------------------TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp --------------------CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred --------------------ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 2334556789999999999999999999999999888
No 108
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.88 E-value=1e-19 Score=145.73 Aligned_cols=192 Identities=20% Similarity=0.335 Sum_probs=132.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK 79 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~ 79 (203)
++.|+ +..+++|+.|++|++||+.+++...... +...+.++..+++.+++|+.|++|++||+++++.+..+..+ ..
T Consensus 164 ~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 164 SSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred EEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 34554 6799999999999999998876533211 11223333335679999999999999999999888777655 56
Q ss_pred EEEEEecCCCceEEEecCCceEEE---------------------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891 80 ITSLDLSKGTETKFAGSSCNDLVT---------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 138 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~ 138 (203)
+.++++ ++..++.+...+.+.. ...++..+++++.|++|++||+++++++..+..+.
T Consensus 242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 319 (445)
T 2ovr_B 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319 (445)
T ss_dssp EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc
Confidence 888887 4455555544433322 22368899999999999999999999888776553
Q ss_pred -eEEEEEecCCcEEEEeecCe----------e---------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 139 -KITSLDLSKGKYYFVFAEGF----------K---------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 139 -~v~~~~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
.+..+.+.+.........+. . ....+..+.+ ++++|++|+.|+.|++||+.+++.++.
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeee
Confidence 35555554432221111110 0 0112233333 678999999999999999999999988
Q ss_pred e
Q psy8891 199 L 199 (203)
Q Consensus 199 ~ 199 (203)
+
T Consensus 398 ~ 398 (445)
T 2ovr_B 398 L 398 (445)
T ss_dssp E
T ss_pred e
Confidence 7
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=9.5e-21 Score=151.49 Aligned_cols=150 Identities=21% Similarity=0.400 Sum_probs=110.1
Q ss_pred CceEEcCCCC-EEEEEeCCCcEEEEeCCCCC---------eEEe-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc
Q psy8891 1 MCAKFLGDPT-KVVSGSCDRTLKIWDLRSTE---------TKFA-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~---------~~~~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~ 68 (203)
.+++|+|++. .|++|+.||+|++||+.... .... +......+.|.| ++..+++++.|+.|++||++.+
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 3689999998 99999999999999998622 1121 222344567888 6779999999999999999976
Q ss_pred ---eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCC-EEEEeeCCCeEEEEECCC-CceEEEEeccceEEE
Q psy8891 69 ---EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRA-EEKVRDIELHGKITS 142 (203)
Q Consensus 69 ---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~i~iWd~~~-~~~~~~~~~~~~v~~ 142 (203)
+.+..+..| ..|++++++| ++. .+++++.|++|++||+++ ..++..+..+..
T Consensus 265 ~~~~~~~~~~~~~~~v~~i~~~p-------------------~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~--- 322 (430)
T 2xyi_A 265 NTSKPSHTVDAHTAEVNCLSFNP-------------------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKD--- 322 (430)
T ss_dssp CSSSCSEEEECCSSCEEEEEECS-------------------SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS---
T ss_pred CCCcceeEeecCCCCeEEEEeCC-------------------CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC---
Confidence 344444333 4566666554 443 788999999999999997 445555543321
Q ss_pred EEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC
Q psy8891 143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~ 192 (203)
.+..+.++|+++ +|++++.|+.|++||+..
T Consensus 323 --------------------~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 323 --------------------EIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --------------------CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred --------------------CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 233455667774 699999999999999986
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.3e-21 Score=157.89 Aligned_cols=156 Identities=10% Similarity=0.136 Sum_probs=108.9
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------------------------------EE--ecCcCceEEEEeCC
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-------------------------------KF--AGSSCNDLVTYDGA 47 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------------------------------~~--~~~~~~~~~~~~~~ 47 (203)
.+++|+|||+++||+|.|++|| |....+. .. .+......++|+|+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 4799999999999999999996 4322110 00 11122445789999
Q ss_pred CCEEEEecCCCeEEEEECCCceEEEeeeeCC-----eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEE
Q psy8891 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHG-----KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122 (203)
Q Consensus 48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~i 122 (203)
|..|++++.||+|++||.+. .+..+..+. .+.+ ++|+|+|+.|++|+.||+|++
T Consensus 97 G~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~s-------------------vafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHC-------------------FEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEE-------------------EEECSSSSCEEEEETTSEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEE-------------------EEEcCCCCEEEEEcCCCEEEE
Confidence 99999999999999999543 444444111 2444 456678889999999999999
Q ss_pred EECCCCce-------EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891 123 WDFRAEEK-------VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV 195 (203)
Q Consensus 123 Wd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~ 195 (203)
||+.++.. ++.+..+.. .+...+..++++|++ +++++.|++|++||+..++.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~-------------------gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDA-------------------GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCT-------------------TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred EECCCCccccccceeeeeeecccc-------------------cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 99987642 333322110 001134566788888 88999999999999988774
Q ss_pred ---eeeec
Q psy8891 196 ---EAVLK 200 (203)
Q Consensus 196 ---~~~~~ 200 (203)
.++++
T Consensus 215 ~~~~~tL~ 222 (588)
T 2j04_A 215 QPVSRMIQ 222 (588)
T ss_dssp CCCEEEEE
T ss_pred ccceeeec
Confidence 34564
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=3.5e-21 Score=152.42 Aligned_cols=165 Identities=11% Similarity=0.115 Sum_probs=112.8
Q ss_pred ceEEcC--------CCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce
Q psy8891 2 CAKFLG--------DPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 2 ~~~~~~--------~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~ 69 (203)
+++|+| |+++|+|||.|++|||||+.+.... ..+......++|.|++. +|++|+.|++|++||+++++
T Consensus 141 ~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 141 DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 578887 8899999999999999999765432 23344445578888764 89999999999999998876
Q ss_pred EEEeee--------------------------eCCeEEEEEec-CCCceEEEecCCceEEEEc-----------------
Q psy8891 70 KVRDIE--------------------------LHGKITSLDLS-KGTETKFAGSSCNDLVTYD----------------- 105 (203)
Q Consensus 70 ~~~~~~--------------------------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~----------------- 105 (203)
...... ....+..+.+. +++..++.+...+.+..|+
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 221 SAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp ----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred ccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 433221 11235556654 5666666655554443332
Q ss_pred ------------------------C--CCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee
Q psy8891 106 ------------------------G--AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK 159 (203)
Q Consensus 106 ------------------------~--~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (203)
+ ++.++++++.|++|++||+.++++......+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-------------------- 360 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-------------------- 360 (393)
T ss_dssp ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--------------------
T ss_pred ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--------------------
Confidence 1 334678889999999999998877655432211
Q ss_pred EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
.+..++|+|||++|++++.|| +.+|.+
T Consensus 361 ---~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 361 ---PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ---CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ---cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 234566778999999998766 666654
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=1.7e-19 Score=143.51 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=149.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-------c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-------G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-------~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~ 73 (203)
+++|+|++..+++++.|++|++||+.+++.... . ......+.++++++.+++++.|+.|++||+++++.+..
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence 678999888889999999999999998765431 1 11223467788889999999999999999999888877
Q ss_pred eeeC-CeEEEEEecCCCceEEEec-CCce----------------------EEEEcCCCCEEEEee--------CCCeEE
Q psy8891 74 IELH-GKITSLDLSKGTETKFAGS-SCND----------------------LVTYDGAGTTIISGH--------FDKKVR 121 (203)
Q Consensus 74 ~~~~-~~v~~~~~~~~~~~~~~~~-~~~~----------------------~~~~~~~~~~l~s~s--------~d~~i~ 121 (203)
+..+ ..+..+++++++..++... .... .+.|+|+|+.|++++ .|+.|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~ 286 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG 286 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence 7654 4689999999888775433 2222 246788999999988 488999
Q ss_pred EEECCCCceEEEEeccceEEEEEecCCc-EEEEeec--Ce---------eE------EeeeEEEEEEcCCCEEEEecC--
Q psy8891 122 FWDFRAEEKVRDIELHGKITSLDLSKGK-YYFVFAE--GF---------KV------QCDFTRAVFVVDDDYVAVGSI-- 181 (203)
Q Consensus 122 iWd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~---------~~------~~~~~~~~~~~~~~~l~s~s~-- 181 (203)
+||+++++....+.....+..+.++++. .+++... +. .. ...+..+.++|+++++++++.
T Consensus 287 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 287 IYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp EEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred EEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence 9999998877766555567777887764 3433321 10 00 112456778899998888876
Q ss_pred -------------CCcEEEEeCCCceeeeeecc
Q psy8891 182 -------------DGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 182 -------------d~~v~~wd~~~~~~~~~~~~ 201 (203)
||.|++||+.+++++..++.
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred CccccccccccccceEEEEEECCCCcEEEEecC
Confidence 57999999999999888764
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=146.39 Aligned_cols=187 Identities=17% Similarity=0.253 Sum_probs=133.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEE--eCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTY--DGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~--~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~ 77 (203)
+++|+|++++|++|+.|++|++||+.+.+... .+......+.+ .+++++|++++.|+.|++||+++++.+..+..+
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 68999999999999999999999998866432 23333445667 788889999999999999999999888888877
Q ss_pred CeEEEEEecCCCceEEEecCCceEEEE-------------------------cCCCC----EEEEeeCCCeEEEEECCCC
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDLVTY-------------------------DGAGT----TIISGHFDKKVRFWDFRAE 128 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~----~l~s~s~d~~i~iWd~~~~ 128 (203)
..+.++++... .++.+.....+..| .++.. .+++++.|+.|++||++..
T Consensus 171 ~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 171 ERCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp SCEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CCceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 77777766543 22222222222222 22222 2999999999999999877
Q ss_pred ---ceEEEEeccc-------------eEEEEEecCCcEEEEeec--Ce----------e------EEeeeEEEEEEcCCC
Q psy8891 129 ---EKVRDIELHG-------------KITSLDLSKGKYYFVFAE--GF----------K------VQCDFTRAVFVVDDD 174 (203)
Q Consensus 129 ---~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~--~~----------~------~~~~~~~~~~~~~~~ 174 (203)
.....+..+. .+.++.++++..+++... +. . ....+..+.|+|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 328 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN 328 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCC
Confidence 4455555554 488888888754444332 10 0 122456788999999
Q ss_pred EEEEecCCCcEEEEeC
Q psy8891 175 YVAVGSIDGNIYVWDC 190 (203)
Q Consensus 175 ~l~s~s~d~~v~~wd~ 190 (203)
+|++|+.|+..+.|+.
T Consensus 329 ~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 329 IFAYASSYDWSKGHEF 344 (368)
T ss_dssp CEEEEECCCSTTCGGG
T ss_pred eEEEEecccccccccc
Confidence 9999999886666554
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.87 E-value=3.1e-20 Score=148.16 Aligned_cols=187 Identities=12% Similarity=0.246 Sum_probs=128.0
Q ss_pred CceEEcCCCCEEEEEeCCCcEEEEeCCCCC-eEE----------ecCcCceEEEEeCCC-CEEEEecCCCeEEEEECCCc
Q psy8891 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE-TKF----------AGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~----------~~~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~ 68 (203)
.+++|+|+++.|++| .|++|++||++... ... .+......+.|+|++ +.|++|+.|++|++||++.+
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 368999999999999 79999999998422 211 112224557889988 89999999999999999988
Q ss_pred eE----EEeeeeCC-------------eEEEEEecCCCceEEEecCCceE------------------------------
Q psy8891 69 EK----VRDIELHG-------------KITSLDLSKGTETKFAGSSCNDL------------------------------ 101 (203)
Q Consensus 69 ~~----~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~~------------------------------ 101 (203)
+. ...+..+. .|.+++++|++..++.+.. ..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 75 56666553 7999999999887776543 211
Q ss_pred ---------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEee---------cCeeEEe
Q psy8891 102 ---------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFA---------EGFKVQC 162 (203)
Q Consensus 102 ---------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~---------~~~~~~~ 162 (203)
+.|+|++++|++++.|++|++||+.+++.+. ++.+. ................. .......
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK 417 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCC
Confidence 5789999999999999999999999887652 22211 00000000000000000 0001122
Q ss_pred eeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~ 191 (203)
.+..+.++|++.+|++++.++ +++|..+
T Consensus 418 ~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 418 KILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 456688999999999998876 8888644
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=1.4e-18 Score=138.26 Aligned_cols=191 Identities=16% Similarity=0.214 Sum_probs=143.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~ 77 (203)
+++|++++..+++++.|++|++||+++.+... . .......+.++|+++.+ ++++.|+.|++||+++++.+..+..+
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 57889999999999999999999998866432 2 22234557889999877 56668999999999999988888878
Q ss_pred CeEEEEEecCCCceEEEecC--------Cce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECC
Q psy8891 78 GKITSLDLSKGTETKFAGSS--------CND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFR 126 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~--------~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~ 126 (203)
+.+..++++|++..++.+.. ... .+.|+|+++.+ ++++.|++|++||+.
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 88999999998877665441 111 24678888654 666899999999999
Q ss_pred CCceEEEEeccceEEEEEecCCcE-EEEeecC----------------eeE---------------EeeeEEEEEEcCCC
Q psy8891 127 AEEKVRDIELHGKITSLDLSKGKY-YFVFAEG----------------FKV---------------QCDFTRAVFVVDDD 174 (203)
Q Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~----------------~~~---------------~~~~~~~~~~~~~~ 174 (203)
+++....+.....+..+.++++.. +++.... ... ...+..+.++|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 334 EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNR 413 (433)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSC
T ss_pred CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCC
Confidence 998888887777788888887653 3332221 110 01234567889999
Q ss_pred EEEEecC-CCcEEEEeCCC
Q psy8891 175 YVAVGSI-DGNIYVWDCNT 192 (203)
Q Consensus 175 ~l~s~s~-d~~v~~wd~~~ 192 (203)
+|++++. |++|++|+++.
T Consensus 414 ~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 414 YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEETTTTEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEecC
Confidence 9988765 99999999863
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=8.1e-20 Score=146.09 Aligned_cols=161 Identities=14% Similarity=0.234 Sum_probs=114.1
Q ss_pred CceEEcCC-CCEEEEEeCCCcEEEEeCCC----------CCe--EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEEC
Q psy8891 1 MCAKFLGD-PTKVVSGSCDRTLKIWDLRS----------TET--KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDF 65 (203)
Q Consensus 1 ~~~~~~~~-~~~l~t~s~D~~v~lwdl~~----------~~~--~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~ 65 (203)
.+++|+|+ +..|++++.||+|++||+.. ... .+. +......+.|.|++. .|++|+.||+|++||+
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 36899997 67999999999999999975 121 122 222234578888887 9999999999999999
Q ss_pred CCceE-------EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC---ceEEEE
Q psy8891 66 RAEEK-------VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---EKVRDI 134 (203)
Q Consensus 66 ~~~~~-------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~---~~~~~~ 134 (203)
..+.. ...+..| ..|.+++++|+ ++..+++++.|++|++||++++ .++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~------------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLL------------------HESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TSCCBGGGEEECSEEECCCSSCEEEEEECSS------------------CTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCCCCCCceeccceeecCCCCCEeeeEEeCC------------------CCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 87422 1222222 34555555442 4568999999999999999976 344444
Q ss_pred eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC-ceeeeeeccC
Q psy8891 135 ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT-EQVEAVLKDM 202 (203)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~-~~~~~~~~~~ 202 (203)
..+. ..+..+.|+|++. +|++|+.|++|++||+++ ++++.++++|
T Consensus 274 ~~~~-----------------------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 274 DAHT-----------------------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp ECCS-----------------------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred ecCC-----------------------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 3221 1234556677776 689999999999999987 6777777654
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=2.1e-20 Score=146.04 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=109.7
Q ss_pred eEEcCCCCEEEE--EeCCCcEEEEeCCCCC------------------eEEec-CcCceEEEEeCCCCEEEEecCCCe-E
Q psy8891 3 AKFLGDPTKVVS--GSCDRTLKIWDLRSTE------------------TKFAG-SSCNDLVTYDGAGTTIISGHFDKK-V 60 (203)
Q Consensus 3 ~~~~~~~~~l~t--~s~D~~v~lwdl~~~~------------------~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~-i 60 (203)
+++++ ..++. |+.||+|++||+.+.. ..+.+ ......+.++|++++|+||+.|++ |
T Consensus 143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 34555 44554 6899999999998643 12222 233456789999999999999998 9
Q ss_pred EEEECCCceEEEeee---eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891 61 RFWDFRAEEKVRDIE---LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137 (203)
Q Consensus 61 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~ 137 (203)
+|||+++++++.++. ..+.|.+++|+ |+|++|++++.|++|++||++.+...+...+.
T Consensus 221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s-------------------~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 221 RVFKTEDGVLVREFRRGLDRADVVDMKWS-------------------TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp EEEETTTCCEEEEEECTTCCSCEEEEEEC-------------------TTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred EEEECCCCcEEEEEEcCCCCCcEEEEEEC-------------------CCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence 999999999988887 34567766554 56679999999999999999865432222211
Q ss_pred ceEEEEEecCC--cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 138 GKITSLDLSKG--KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 138 ~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
..+....+... ...+...... ......++++++++++++++.||.+++|++..++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 282 GWINMKYFQSEWSLCNFKLSVDK--HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TTEECCCCCCSSCSEEEECCCCT--TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ceeeccccccccceeEEEeccCC--CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 11000000000 0000000000 0011346788999999999999999999987544
No 118
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.85 E-value=5.2e-19 Score=150.92 Aligned_cols=195 Identities=14% Similarity=0.216 Sum_probs=145.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc-eEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~-~~~~~~~~~ 77 (203)
+++|+|++++|++|+.|++|++||+.+++... . +......+.|+|+++.|++++.|++|++||++.+ .....+..+
T Consensus 60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 68999999999999999999999998876532 2 2333456789999999999999999999999887 555666544
Q ss_pred -CeEEEEEecC-CCceEEEecCCce------------------------EEEEcC--CCCEEEEeeCCCeEEEEECCCCc
Q psy8891 78 -GKITSLDLSK-GTETKFAGSSCND------------------------LVTYDG--AGTTIISGHFDKKVRFWDFRAEE 129 (203)
Q Consensus 78 -~~v~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~--~~~~l~s~s~d~~i~iWd~~~~~ 129 (203)
..|.+++++| ++..++.+..... .+.|+| ++..|++++.|++|++||+++++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 5799999999 6666665544332 356777 89999999999999999999998
Q ss_pred eEEEEecc-ceEEEEEecCCcEEEEeec--Ce-eE---------------EeeeEEEEEEcCCCE-EEEecCCCcEEEEe
Q psy8891 130 KVRDIELH-GKITSLDLSKGKYYFVFAE--GF-KV---------------QCDFTRAVFVVDDDY-VAVGSIDGNIYVWD 189 (203)
Q Consensus 130 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~-~~---------------~~~~~~~~~~~~~~~-l~s~s~d~~v~~wd 189 (203)
++..+..+ ..+..+.++++...++... +. .+ ...+..+.++|++.. +++++.|+.+.+|+
T Consensus 220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 88888755 4688888888765444332 11 00 113456677888763 34555577799999
Q ss_pred CCCceee
Q psy8891 190 CNTEQVE 196 (203)
Q Consensus 190 ~~~~~~~ 196 (203)
+..+...
T Consensus 300 ~~~~~~~ 306 (814)
T 3mkq_A 300 LGNDEPT 306 (814)
T ss_dssp CSCCSCC
T ss_pred cCCCCce
Confidence 8755443
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.84 E-value=2e-18 Score=132.89 Aligned_cols=160 Identities=9% Similarity=0.185 Sum_probs=109.6
Q ss_pred EEEeCC----CCEEEEecCCCeEEEEECCCceEEEee-e-eCCeEEEEEecCCCceEEE---ecCCceEEEEcC---CCC
Q psy8891 42 VTYDGA----GTTIISGHFDKKVRFWDFRAEEKVRDI-E-LHGKITSLDLSKGTETKFA---GSSCNDLVTYDG---AGT 109 (203)
Q Consensus 42 ~~~~~~----~~~l~s~~~D~~i~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~ 109 (203)
++++|+ ++.+++++.+ +++|++.+++.+.+. . .++.|..+++++++..+.. ......++.|++ ++.
T Consensus 117 la~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp ECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred EEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 456788 8899998844 889999888877663 2 3577999999998765432 344456777887 789
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEeccc----eEEEEEecCCcEEEEeec----------C---eeEEe------eeEE
Q psy8891 110 TIISGHFDKKVRFWDFRAEEKVRDIELHG----KITSLDLSKGKYYFVFAE----------G---FKVQC------DFTR 166 (203)
Q Consensus 110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~----------~---~~~~~------~~~~ 166 (203)
.|++++.|++||+||+.++++++++..+. .+..+.++++..+++... + ..+.. ....
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 99999999999999999999999987432 245556666655543211 0 00000 0000
Q ss_pred E-EE-EcCC------------CEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891 167 A-VF-VVDD------------DYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203 (203)
Q Consensus 167 ~-~~-~~~~------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 203 (203)
. .+ .|++ .++++|+.|++|+|||+.+|+++++|++|+
T Consensus 275 v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~ 325 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS 325 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred EEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence 0 00 0333 368999999999999999999999998874
No 120
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.83 E-value=8.9e-19 Score=134.94 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=133.8
Q ss_pred ceEEcCCCC-EEEEEeCCCcEEEEeC-CCCCeEEe----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCC--------
Q psy8891 2 CAKFLGDPT-KVVSGSCDRTLKIWDL-RSTETKFA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-------- 67 (203)
Q Consensus 2 ~~~~~~~~~-~l~t~s~D~~v~lwdl-~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-------- 67 (203)
+++|+|+++ .|++|+.|++|++||+ .+.+.... +......+.+.+ ++.|++++.|+.|++||++.
T Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence 688999999 9999999999999999 87664322 222234567888 89999999999999999987
Q ss_pred -ceEEEeeeeCCeEEEEEecCCCceEEEecCC--------------------------ceEEEEcC-CCCEEEEeeCCCe
Q psy8891 68 -EEKVRDIELHGKITSLDLSKGTETKFAGSSC--------------------------NDLVTYDG-AGTTIISGHFDKK 119 (203)
Q Consensus 68 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~-~~~~l~s~s~d~~ 119 (203)
++.+..+...+.+.+++++++. ++.+... ...+.|+| ++..+++++.|+.
T Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 140 KNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred cCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 6666666666778888888765 3322111 12357899 9999999999999
Q ss_pred EEEEECCCC------ceEEEEeccc----------eEEEEEecCCcEEEEeec--Ce----------e------E-Eeee
Q psy8891 120 VRFWDFRAE------EKVRDIELHG----------KITSLDLSKGKYYFVFAE--GF----------K------V-QCDF 164 (203)
Q Consensus 120 i~iWd~~~~------~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~--~~----------~------~-~~~~ 164 (203)
|++||++.. +....+..+. .+.++.++++..+++... +. . . ...+
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 999999876 6666776552 688888887654443321 10 0 0 1123
Q ss_pred EEEEEEcCCCEEEEecCCCc-EEEEe
Q psy8891 165 TRAVFVVDDDYVAVGSIDGN-IYVWD 189 (203)
Q Consensus 165 ~~~~~~~~~~~l~s~s~d~~-v~~wd 189 (203)
..+. |++++|++|+.|++ .+.|.
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred eEec--CCCCeEEEEecCCccccccc
Confidence 3333 89999999999999 55555
No 121
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.82 E-value=2.7e-18 Score=132.03 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=119.7
Q ss_pred EEEeCCCcEEEEeC--CCCCeE----Ee-cCcCceEEEEeCC-CCEEEEecCCCeEEEEECCCce-----EEEeeeeC-C
Q psy8891 13 VSGSCDRTLKIWDL--RSTETK----FA-GSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEE-----KVRDIELH-G 78 (203)
Q Consensus 13 ~t~s~D~~v~lwdl--~~~~~~----~~-~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~-----~~~~~~~~-~ 78 (203)
.||-..|+..+|-. ...+.. +. +...+..++++|+ +++|+|||.|++|+|||+...+ +.+.+..| .
T Consensus 8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 45555566555533 222211 22 2333556788887 6799999999999999997653 34455544 6
Q ss_pred eEEEEEecCCCceEEEecCCceE-----------------------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891 79 KITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 135 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~ 135 (203)
.|.++.++|++..++.+.....+ ..+.+++..|++++.|+.+++||+..........
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 79999999999988877665443 3456778899999999999999987654332211
Q ss_pred -c-cceEEEEEecCC--cEEEEeec------------Cee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891 136 -L-HGKITSLDLSKG--KYYFVFAE------------GFK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 136 -~-~~~v~~~~~~~~--~~~~~~~~------------~~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~ 193 (203)
. ...+..+.+++. ..+++... +.. ....+..+.|+|++++|++|+.|++|++||++++
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 1 133555555432 22222111 000 1124567789999999999999999999999999
Q ss_pred eeeeeeccC
Q psy8891 194 QVEAVLKDM 202 (203)
Q Consensus 194 ~~~~~~~~~ 202 (203)
+++..++.+
T Consensus 248 ~~~~~~~~~ 256 (340)
T 4aow_A 248 KHLYTLDGG 256 (340)
T ss_dssp EEEEEEECS
T ss_pred ceeeeecCC
Confidence 999887654
No 122
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1.1e-18 Score=140.03 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=109.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCC-----------CeE-------EecCcCceEEEEeCCCCEEE----EecCCCe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-----------ETK-------FAGSSCNDLVTYDGAGTTII----SGHFDKK 59 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-----------~~~-------~~~~~~~~~~~~~~~~~~l~----s~~~D~~ 59 (203)
++++++++..+++++.|+ +++|+.... ... .........+.|++++++|+ +|+.|++
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~ 119 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI 119 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence 568899999999999988 999875310 000 11112245578999999999 8999999
Q ss_pred EEEEECCCc--------eE---EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891 60 VRFWDFRAE--------EK---VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127 (203)
Q Consensus 60 i~vwd~~~~--------~~---~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~ 127 (203)
|+|||+++. +. +..+..| ..|.+++|+|+ ++.+|++++.|++|++||+++
T Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~------------------~~~~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT------------------VPSMVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS------------------CTTEEEEEETTSCEEEEEESS
T ss_pred EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC------------------CCCEEEEEECCCeEEEEEcCC
Confidence 999998764 11 2222222 45666655543 156899999999999999998
Q ss_pred CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+........+. ..+..++++|++++|++|+.|++|++||.+ ++..++++
T Consensus 182 ~~~~~~~~~~~-----------------------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 182 TVKVCATLPST-----------------------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp SEEEEEEECGG-----------------------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred CcceeeccCCC-----------------------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 75433322211 123456677899999999999999999998 66665554
No 123
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.81 E-value=7e-18 Score=128.48 Aligned_cols=147 Identities=18% Similarity=0.296 Sum_probs=102.6
Q ss_pred ceEEEEeCCCCEEEEecCCCeEEEEECCCc--eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee
Q psy8891 39 NDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH 115 (203)
Q Consensus 39 ~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 115 (203)
...+++++++++|+||+.|++|+|||+..+ +.+.++..| ++|.+++|+++ .++++|++++
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-----------------~~g~~l~s~s 74 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-----------------KFGTILASCS 74 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-----------------GGCSEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-----------------CcCCEEEEEc
Confidence 345788999999999999999999999753 455666655 56887776542 1256899999
Q ss_pred CCCeEEEEECCCCc--eEEEEecc-ceEEEEEecCC--cEEEEee-cCee-------------------EEeeeEEEEEE
Q psy8891 116 FDKKVRFWDFRAEE--KVRDIELH-GKITSLDLSKG--KYYFVFA-EGFK-------------------VQCDFTRAVFV 170 (203)
Q Consensus 116 ~d~~i~iWd~~~~~--~~~~~~~~-~~v~~~~~~~~--~~~~~~~-~~~~-------------------~~~~~~~~~~~ 170 (203)
.|++|++||+++++ .+..+..+ ..|.++.+++. ..+++.. .... ....+..+.++
T Consensus 75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 99999999998764 34444433 45888888764 2222221 1100 01124456677
Q ss_pred cC-------------CCEEEEecCCCcEEEEeCCCce----eeeeeccC
Q psy8891 171 VD-------------DDYVAVGSIDGNIYVWDCNTEQ----VEAVLKDM 202 (203)
Q Consensus 171 ~~-------------~~~l~s~s~d~~v~~wd~~~~~----~~~~~~~~ 202 (203)
|+ +++|++|+.|++|++||+++++ ++.++++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 75 5799999999999999998765 66677765
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=2.6e-17 Score=131.18 Aligned_cols=174 Identities=10% Similarity=0.028 Sum_probs=120.6
Q ss_pred ceEEcCCCCEEEEEeCCC---cEEEEeCCCCCeEE-e-cCcCceEEEEeCCCCEEE-EecCCCe--EEEEECCCceEEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDR---TLKIWDLRSTETKF-A-GSSCNDLVTYDGAGTTII-SGHFDKK--VRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~---~v~lwdl~~~~~~~-~-~~~~~~~~~~~~~~~~l~-s~~~D~~--i~vwd~~~~~~~~~ 73 (203)
+++|+|||++|++++.|+ +|++||+.+++... . .......+.|+|+++.|+ +++.|+. |++||+++++....
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l 262 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 262 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC
Confidence 578999999999999886 99999999876532 2 222345578999999777 7776664 99999988776433
Q ss_pred eeeCCeEEEEEecCCCceEEEecCC-c--e----------------------EEEEcCCCCEEEEeeCC---CeEEEEEC
Q psy8891 74 IELHGKITSLDLSKGTETKFAGSSC-N--D----------------------LVTYDGAGTTIISGHFD---KKVRFWDF 125 (203)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~-~--~----------------------~~~~~~~~~~l~s~s~d---~~i~iWd~ 125 (203)
....+.+..++|+|++..++..+.. . . ...|+|+|++|++++.+ ..|++||+
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 3334568888888887765543321 0 1 14677888888777764 57888888
Q ss_pred CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC---cEEEEeCCCceeeeeecc
Q psy8891 126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG---NIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~v~~wd~~~~~~~~~~~~ 201 (203)
.+++.. .+..+. ......++|++++|++++.|+ .|++||+. ++.++.+.+
T Consensus 343 ~~~~~~-~l~~~~------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~ 395 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 395 (415)
T ss_dssp TTCCEE-ECCCSS------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred CCCCEE-EecCCC------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence 776542 221111 123456778999999988877 79999987 455555553
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.78 E-value=2.9e-17 Score=125.86 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=109.8
Q ss_pred CceEEEEeCCCCEEEEecCCCeEEEEECCCce----EEEeeeeC-CeEEEEEecC--CCceEEEecCCce----------
Q psy8891 38 CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSK--GTETKFAGSSCND---------- 100 (203)
Q Consensus 38 ~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~----~~~~~~~~-~~v~~~~~~~--~~~~~~~~~~~~~---------- 100 (203)
....+.|+|++++|++|+.|++|++||+..+. ....+..| +.|.++++++ ++..++.+...+.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 34567889999999999999999999998763 44555544 6799999998 4666665443221
Q ss_pred ----------------------EEEEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEec--------------cceEEE
Q psy8891 101 ----------------------LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIEL--------------HGKITS 142 (203)
Q Consensus 101 ----------------------~~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~~~~~--------------~~~v~~ 142 (203)
.+.|+|+ +.+|++++.|++|++||+++++.+..+.. ...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 2467888 99999999999999999988765433321 123555
Q ss_pred EEecCC---cEEEEee-cC-----------e--------eEEeeeEEEEEEcCC----CEEEEecCCCcEEEEeCCCc
Q psy8891 143 LDLSKG---KYYFVFA-EG-----------F--------KVQCDFTRAVFVVDD----DYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 143 ~~~~~~---~~~~~~~-~~-----------~--------~~~~~~~~~~~~~~~----~~l~s~s~d~~v~~wd~~~~ 193 (203)
+.+++. ...++.. .. . .....+..+.++|++ .+|++|+.|+.|++||++++
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 666553 2222211 10 0 012245678899998 79999999999999999875
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.78 E-value=9.8e-17 Score=132.04 Aligned_cols=179 Identities=12% Similarity=0.109 Sum_probs=130.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEEC--CCceEEEeeeeCCe
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF--RAEEKVRDIELHGK 79 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~--~~~~~~~~~~~~~~ 79 (203)
.|+|++..+++++.|++|++||..+.+... ........+.++|++++|++++.|++|++||+ .+++.+.++.....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~ 223 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 223 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence 478889999999999999999999876532 21222345779999999999999999999999 78877777765555
Q ss_pred EEEEEecCCCceEEEecCCceEEEEcC----CCCEEEEeeC-CCeEEEEECCCCceEEEEeccc------------eEEE
Q psy8891 80 ITSLDLSKGTETKFAGSSCNDLVTYDG----AGTTIISGHF-DKKVRFWDFRAEEKVRDIELHG------------KITS 142 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~~~~------------~v~~ 142 (203)
+..++ |+| +|++|+++++ +++|.+||..++++++.+...+ .+..
T Consensus 224 p~~va-------------------~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 224 ARSVE-------------------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp EEEEE-------------------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred cceEE-------------------eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 55554 455 6678888874 8999999999999988876532 4666
Q ss_pred EEecCC-cEEEEeecC--eeE----------E-------eeeEEEEEEcCCCEEEEe-cCCCcEEEEeCCCceeeeeecc
Q psy8891 143 LDLSKG-KYYFVFAEG--FKV----------Q-------CDFTRAVFVVDDDYVAVG-SIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 143 ~~~~~~-~~~~~~~~~--~~~----------~-------~~~~~~~~~~~~~~l~s~-s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
+.+++. ..+++...+ ... . .......|+|++++|+++ ..+++|.+||+.+++++++++.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 666653 333322111 000 0 012235788999986655 5689999999999999998863
No 127
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=5.8e-18 Score=135.80 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=84.7
Q ss_pred ceEEcCCCCEEE----EEeCCCcEEEEeCCCC--------Ce---EEe---cCcCceEEEEeCC-CCEEEEecCCCeEEE
Q psy8891 2 CAKFLGDPTKVV----SGSCDRTLKIWDLRST--------ET---KFA---GSSCNDLVTYDGA-GTTIISGHFDKKVRF 62 (203)
Q Consensus 2 ~~~~~~~~~~l~----t~s~D~~v~lwdl~~~--------~~---~~~---~~~~~~~~~~~~~-~~~l~s~~~D~~i~v 62 (203)
+++|+|++++|+ ||+.|++|++||+.+. +. ... +......+.|+|+ +++|++++.|++|++
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i 176 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV 176 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence 689999999999 8999999999998643 11 111 1223455788887 789999999999999
Q ss_pred EECCCceEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891 63 WDFRAEEKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 135 (203)
Q Consensus 63 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~ 135 (203)
||++++........ ...|.++ +|+|+|++|++++.|++|++||++ ++....+.
T Consensus 177 wD~~~~~~~~~~~~~~~~v~~v-------------------~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 177 LQVTETVKVCATLPSTVAVTSV-------------------CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEESSSEEEEEEECGGGCEEEE-------------------EECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred EEcCCCcceeeccCCCCceeEE-------------------EEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 99998865433332 2345554 456677799999999999999998 55554443
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.76 E-value=4.2e-16 Score=128.25 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=126.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeC--CCCCeEE--ecCcCceEEEEeC----CCCEEEEec-CCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDL--RSTETKF--AGSSCNDLVTYDG----AGTTIISGH-FDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl--~~~~~~~--~~~~~~~~~~~~~----~~~~l~s~~-~D~~i~vwd~~~~~~~~ 72 (203)
+++|+||+++|++++.|++|++||+ .+.+... ........++++| ++++|++++ .+++|.|||..+.++++
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce
Confidence 4789999999999999999999999 6654322 2222224467899 999999988 58999999999998887
Q ss_pred eeeeC------------CeEEEEEecCCCceEEEec-CC------------------------ceEEEEcCCCCEEEEe-
Q psy8891 73 DIELH------------GKITSLDLSKGTETKFAGS-SC------------------------NDLVTYDGAGTTIISG- 114 (203)
Q Consensus 73 ~~~~~------------~~v~~~~~~~~~~~~~~~~-~~------------------------~~~~~~~~~~~~l~s~- 114 (203)
.+..+ ..+..+.+++++..++... .. ..-+.|+|+|++++++
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEe
Confidence 77542 1577788887655433211 00 0125789999977655
Q ss_pred eCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEec-CCCcEEEEeCCC
Q psy8891 115 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGS-IDGNIYVWDCNT 192 (203)
Q Consensus 115 s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s-~d~~v~~wd~~~ 192 (203)
..+++|++||..+++++..+...... +++. . ...+.|+ +..++++. .|++|.+||+.+
T Consensus 343 ~~~~~v~v~D~~tg~l~~~i~~g~~p-----h~g~--------------g-~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLSALVDVGKTP-----HPGR--------------G-ANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSB-----CCTT--------------C-EEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCCCeEEEEECCCCeEEEeeccCCCC-----CCCC--------------C-cccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 45889999999998877665431100 0000 0 0113466 45667775 689999999998
Q ss_pred -------ceeeeeeccC
Q psy8891 193 -------EQVEAVLKDM 202 (203)
Q Consensus 193 -------~~~~~~~~~~ 202 (203)
.++++++++|
T Consensus 403 ~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp TTCTTTBTSEEEEEECS
T ss_pred CCCchhcCeEEEEEEcC
Confidence 8999998764
No 129
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.75 E-value=2.8e-17 Score=126.23 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=97.2
Q ss_pred CceEEcCC--CCEEEEEeCCCcEEEEeCCCCCeE-E----ec-CcCceEEEEeCC-----------------CCEEEEec
Q psy8891 1 MCAKFLGD--PTKVVSGSCDRTLKIWDLRSTETK-F----AG-SSCNDLVTYDGA-----------------GTTIISGH 55 (203)
Q Consensus 1 ~~~~~~~~--~~~l~t~s~D~~v~lwdl~~~~~~-~----~~-~~~~~~~~~~~~-----------------~~~l~s~~ 55 (203)
.+++|+|+ +..|+||+.|++|++||++..... . .. ......+.|.|+ +++|++|+
T Consensus 107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 36899998 789999999999999999864311 1 11 111233556665 46899999
Q ss_pred CCCeEEEEECCCc---eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc--
Q psy8891 56 FDKKVRFWDFRAE---EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-- 129 (203)
Q Consensus 56 ~D~~i~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-- 129 (203)
.|++|++||++.+ +.+..+..| +.|.+++++|+.. .++..|++++.|++|++||+++..
T Consensus 187 ~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~---------------~~~~~las~s~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG---------------LPTSTIASCSQDGRVFIWTCDDASSN 251 (316)
T ss_dssp TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS---------------CSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC---------------CCCceEEEEcCCCeEEEEEccCcccc
Confidence 9999999999754 345556554 5688888776431 123689999999999999987621
Q ss_pred --eEEEEe-ccceEEEEEecCCcEEEEee
Q psy8891 130 --KVRDIE-LHGKITSLDLSKGKYYFVFA 155 (203)
Q Consensus 130 --~~~~~~-~~~~v~~~~~~~~~~~~~~~ 155 (203)
....+. ....+.++.++++...++..
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 112222 24568899998876655543
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=8.9e-17 Score=123.23 Aligned_cols=172 Identities=11% Similarity=0.131 Sum_probs=116.9
Q ss_pred ceEEcCCCCEEEEEe------------CCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891 2 CAKFLGDPTKVVSGS------------CDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s------------~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~ 67 (203)
+++|+||++.|++++ .++.|++||+.+.+.. .........+.++|+++.|+.+ ++.|++||+.+
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 578999999999886 6799999999876542 2222222336789999988887 68999999998
Q ss_pred ceEEEeeeeCCeEEEEEecCCCceEEEe------------------------------------------------cCCc
Q psy8891 68 EEKVRDIELHGKITSLDLSKGTETKFAG------------------------------------------------SSCN 99 (203)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------------------------~~~~ 99 (203)
++.+..+..+.....+.+++++..++.. ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 243 (337)
T 1pby_B 164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243 (337)
T ss_dssp TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence 8876655432200011222222211100 0011
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEe
Q psy8891 100 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG 179 (203)
Q Consensus 100 ~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 179 (203)
..+.|+|+|++++++ ++.|++||+.+++.+..+..... ...+.++|++++|+++
T Consensus 244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~------------------------~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS------------------------YYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC------------------------CCEEEECTTSCEEEEE
T ss_pred eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc------------------------eeeEEECCCCCEEEEE
Confidence 236788888888877 68899999888776655543322 2245577899999999
Q ss_pred cCCCcEEEEeCCCceeeeeecc
Q psy8891 180 SIDGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 180 s~d~~v~~wd~~~~~~~~~~~~ 201 (203)
+.++.|++||+.+++.+..++.
T Consensus 298 ~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEEC
T ss_pred cCCCcEEEEECcCCcEEEEEEc
Confidence 9999999999999999988763
No 131
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1e-15 Score=119.07 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=114.3
Q ss_pred cCceEEEEeCCCCEEEEecCCCeEEEEECC--CceEEEeeeeC-CeEEEEEecCC--CceEEEecCCce-----------
Q psy8891 37 SCNDLVTYDGAGTTIISGHFDKKVRFWDFR--AEEKVRDIELH-GKITSLDLSKG--TETKFAGSSCND----------- 100 (203)
Q Consensus 37 ~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~--~~~~~~~~~~~-~~v~~~~~~~~--~~~~~~~~~~~~----------- 100 (203)
.....++++|++++|++|+.|+.|+|||+. +.+.+..+..| +.|.+++++++ +..++.+.....
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 334557889999999999999999999998 44556666654 67999999876 666665544332
Q ss_pred --------------EEEEcCC--CCEEEEeeCCCeEEEEECCCCceEE--EEec-cceEEEEEecC-------------C
Q psy8891 101 --------------LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVR--DIEL-HGKITSLDLSK-------------G 148 (203)
Q Consensus 101 --------------~~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~--~~~~-~~~v~~~~~~~-------------~ 148 (203)
.+.|+|+ +..|++++.|++|++||++++.... .+.. ...+.++.+++ +
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 2567888 8999999999999999998774332 2222 34588888877 2
Q ss_pred cEEEEeec--Ce-------------e-------EEeeeEEEEEEcC---CCEEEEecCCCcEEEEeCCCce
Q psy8891 149 KYYFVFAE--GF-------------K-------VQCDFTRAVFVVD---DDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 149 ~~~~~~~~--~~-------------~-------~~~~~~~~~~~~~---~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
...++... +. . ....+..+.++|+ +.+|++++.|+.|++||+++++
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 33333221 10 0 0123456788999 8999999999999999998764
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=7.7e-15 Score=112.62 Aligned_cols=195 Identities=12% Similarity=0.111 Sum_probs=134.2
Q ss_pred ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCe-E--E-ecCcCceEEEEeCCCCEEEEecCCC---eEEEEECCCceEEEe
Q psy8891 2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTET-K--F-AGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRD 73 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~-~--~-~~~~~~~~~~~~~~~~~l~s~~~D~---~i~vwd~~~~~~~~~ 73 (203)
+++|+||++.++.++. ++.|.+||+.+.+. . . .+......+.++|++++|+++..++ .|++||+.+++.+..
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 4789999997766665 89999999987653 2 1 1222222267899999998666653 999999999988888
Q ss_pred eeeCCeEEEEEecCCCceEEEec-CCc----------------------------eEEEEcCCCCEEEEe-eCCCeEEEE
Q psy8891 74 IELHGKITSLDLSKGTETKFAGS-SCN----------------------------DLVTYDGAGTTIISG-HFDKKVRFW 123 (203)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~-~~~----------------------------~~~~~~~~~~~l~s~-s~d~~i~iW 123 (203)
+........++++|++..++... ... ..+.|+|+|+.++.+ ..+++|++|
T Consensus 124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence 77777778899999887554331 111 124678999866554 468999999
Q ss_pred ECCCCce---EEEEeccceEEEEEecCCcE-EEEeecCe-----------eE--Eeee--------------EEEEEEcC
Q psy8891 124 DFRAEEK---VRDIELHGKITSLDLSKGKY-YFVFAEGF-----------KV--QCDF--------------TRAVFVVD 172 (203)
Q Consensus 124 d~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-----------~~--~~~~--------------~~~~~~~~ 172 (203)
|+.+++. +..+.....+..+.++++.. +++...+. .. ...+ ..+.++|+
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 283 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT 283 (331)
T ss_dssp ECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT
T ss_pred ECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC
Confidence 9998887 77777666677777877644 33322111 00 0000 11478899
Q ss_pred CCEEEEe-cCCCcEEEEeCCCceee
Q psy8891 173 DDYVAVG-SIDGNIYVWDCNTEQVE 196 (203)
Q Consensus 173 ~~~l~s~-s~d~~v~~wd~~~~~~~ 196 (203)
+++|+.+ ..++.|++||+.+..+.
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCEEEEecCCCCcEEEEEecCCccc
Confidence 9987655 45679999999876543
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=3.7e-14 Score=109.47 Aligned_cols=199 Identities=12% Similarity=0.081 Sum_probs=138.9
Q ss_pred ceEEcCCCCEEEEEeC-------CCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCE-EEEecCCCeEEEEECCCceEE
Q psy8891 2 CAKFLGDPTKVVSGSC-------DRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRAEEKV 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-------D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~-l~s~~~D~~i~vwd~~~~~~~ 71 (203)
.++|+|+++.++.++. +++|.+||+.+.+... ........+.++++++. +++...++.|.+||+.+++.+
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK 124 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE
Confidence 4689999999888774 5689999998866432 11222233678899884 556667899999999999887
Q ss_pred EeeeeCC----------eEEEEEecCCCceEEEec--CCce-----------------------EEEEcCCCCEEEEeeC
Q psy8891 72 RDIELHG----------KITSLDLSKGTETKFAGS--SCND-----------------------LVTYDGAGTTIISGHF 116 (203)
Q Consensus 72 ~~~~~~~----------~v~~~~~~~~~~~~~~~~--~~~~-----------------------~~~~~~~~~~l~s~s~ 116 (203)
..+..+. .+..+.+++++..++... .... .+.|+|+|+.++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 204 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA 204 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC
Confidence 7776532 267889999887665543 1111 1357889999999999
Q ss_pred CCeEEEEECCCCceEEEEec-----cceEEEEEecCCc-EEEEeecC-eeE----------Ee-----eeEEEEEEcCCC
Q psy8891 117 DKKVRFWDFRAEEKVRDIEL-----HGKITSLDLSKGK-YYFVFAEG-FKV----------QC-----DFTRAVFVVDDD 174 (203)
Q Consensus 117 d~~i~iWd~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~~~~~~~-~~~----------~~-----~~~~~~~~~~~~ 174 (203)
++.|.+||+.+++....+.. ...+..+.++++. .+++.... ..+ .. ....+.++|+++
T Consensus 205 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~ 284 (353)
T 3vgz_A 205 DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARN 284 (353)
T ss_dssp TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTT
T ss_pred CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCC
Confidence 99999999999988877765 2235667776643 33333221 100 00 112467889998
Q ss_pred EEE-EecCCCcEEEEeCCCceeeeeec
Q psy8891 175 YVA-VGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 175 ~l~-s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+++ +...++.|.+||..+++.+..++
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 654 45579999999999999988775
No 134
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=1e-14 Score=112.35 Aligned_cols=132 Identities=10% Similarity=0.068 Sum_probs=93.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--CceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--CNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
.+++++++..+++++.|++|++||+.+++.. ..... ....+.++|+++.+ +++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 4577889999999999999999999886543 22222 23456788998855 5667889999999999887766654
Q ss_pred CC-------eEEEEEecCCCceEEEecCC------------ce-------------------------EEEEcCCCCEEE
Q psy8891 77 HG-------KITSLDLSKGTETKFAGSSC------------ND-------------------------LVTYDGAGTTII 112 (203)
Q Consensus 77 ~~-------~v~~~~~~~~~~~~~~~~~~------------~~-------------------------~~~~~~~~~~l~ 112 (203)
.. .+..++++|++..++.+... .. .+.|+|+|+ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 22 15677888888776654411 11 134889998 66
Q ss_pred EeeCCCeEEEEECCCCceEEEEec
Q psy8891 113 SGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 113 s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
.++. .|.+||+.+++....+..
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECS
T ss_pred EccC--cEEEEeCCCCceeccccc
Confidence 6543 499999998887766543
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=1.8e-14 Score=114.77 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=108.9
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCC---eEEEEECCCceEEEeeeeC
Q psy8891 9 PTKVVSGSCD------RTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 9 ~~~l~t~s~D------~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~---~i~vwd~~~~~~~~~~~~~ 77 (203)
+.+++.++.+ ++|++||+...... ..+......+.|+|+++.|++++.|+ .|++||+++++........
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 6777777665 79999999864432 22333345578999999999999885 9999999988775443344
Q ss_pred CeEEEEEecCCCceEE-EecCCc------------------------eEEEEcCCCCEEEEeeC-CC--eEEEEECCCCc
Q psy8891 78 GKITSLDLSKGTETKF-AGSSCN------------------------DLVTYDGAGTTIISGHF-DK--KVRFWDFRAEE 129 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~l~s~s~-d~--~i~iWd~~~~~ 129 (203)
+.+.+++|+|++..++ .+.... ....|+|+|+.|++++. ++ .|.+||+.+++
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 6688888888777555 221110 12456777777766665 33 55666766554
Q ss_pred eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCC---CcEEEEeCCCceeee
Q psy8891 130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID---GNIYVWDCNTEQVEA 197 (203)
Q Consensus 130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~v~~wd~~~~~~~~ 197 (203)
.. .+..+. .......++|++++|++++.+ ..|++||+.++++..
T Consensus 303 ~~-~l~~~~-----------------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~ 349 (415)
T 2hqs_A 303 PQ-RITWEG-----------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 349 (415)
T ss_dssp CE-ECCCSS-----------------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred EE-EEecCC-----------------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE
Confidence 21 111111 012345678999999888764 589999999887743
No 136
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.7e-16 Score=131.18 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=108.6
Q ss_pred ceEEcCC--CCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCceE--
Q psy8891 2 CAKFLGD--PTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEEK-- 70 (203)
Q Consensus 2 ~~~~~~~--~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~~-- 70 (203)
+++|+|+ +..|+||+.||+|++||+.+++ .. .. +......+.++|+ ++.+++|+.||+|++||++.+..
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 6789988 9999999999999999998764 21 11 2233455778888 89999999999999999988733
Q ss_pred EEeee-eCCeEEEEEecCC-------------CceEEEecCCc---------------------------eEEEEcCC--
Q psy8891 71 VRDIE-LHGKITSLDLSKG-------------TETKFAGSSCN---------------------------DLVTYDGA-- 107 (203)
Q Consensus 71 ~~~~~-~~~~v~~~~~~~~-------------~~~~~~~~~~~---------------------------~~~~~~~~-- 107 (203)
...+. ....|.++.++|. +..+++++..+ ..+.|+|+
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence 22232 3467999999983 55555544322 23568899
Q ss_pred -CCEEEEeeCCCeEEEEECCCCceEEE------EeccceEEEEEecCCcEEEE
Q psy8891 108 -GTTIISGHFDKKVRFWDFRAEEKVRD------IELHGKITSLDLSKGKYYFV 153 (203)
Q Consensus 108 -~~~l~s~s~d~~i~iWd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~ 153 (203)
+..|++++.|++|++||+++++.... ......+.++.++++...++
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 270 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE
Confidence 89999999999999999987642111 11224566777776654443
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.68 E-value=4.5e-15 Score=125.69 Aligned_cols=177 Identities=11% Similarity=0.005 Sum_probs=117.4
Q ss_pred ceEEcCCCCEEEEEeC-CC-----cEEEEeCCCCCeE--EecCc-------------------------CceEEEEeCCC
Q psy8891 2 CAKFLGDPTKVVSGSC-DR-----TLKIWDLRSTETK--FAGSS-------------------------CNDLVTYDGAG 48 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-D~-----~v~lwdl~~~~~~--~~~~~-------------------------~~~~~~~~~~~ 48 (203)
+++|+|||++|++++. |+ +|++||+.+++.. ..... ....+.|+||+
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 5789999999999998 88 9999999886642 21111 02346789999
Q ss_pred CEEEEecCCCeEEEEECCCc---eEEEeeeeCCeEEEEEecCCCceEEEecCC---------------------------
Q psy8891 49 TTIISGHFDKKVRFWDFRAE---EKVRDIELHGKITSLDLSKGTETKFAGSSC--------------------------- 98 (203)
Q Consensus 49 ~~l~s~~~D~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------- 98 (203)
+.|++++. +.|++||+.++ +..........+..++++|++..++.....
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~ 199 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGI 199 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESC
T ss_pred CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccc
Confidence 99999886 99999999887 433222223567888888877655432210
Q ss_pred -----------ceEEEEcCCCCEEEEeeCCC---------------------------------eEEEEECCC-CceEEE
Q psy8891 99 -----------NDLVTYDGAGTTIISGHFDK---------------------------------KVRFWDFRA-EEKVRD 133 (203)
Q Consensus 99 -----------~~~~~~~~~~~~l~s~s~d~---------------------------------~i~iWd~~~-~~~~~~ 133 (203)
...+.|+|||+.|++++.|+ .|.+||+.+ ++....
T Consensus 200 ~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 279 (741)
T 2ecf_A 200 AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI 279 (741)
T ss_dssp CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE
T ss_pred cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe
Confidence 02256777777777776654 566666655 443211
Q ss_pred EeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-----CCcEEEEeCCCceeeeeecc
Q psy8891 134 IELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-----DGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 134 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----d~~v~~wd~~~~~~~~~~~~ 201 (203)
.... .....+....+ ||+++|+.++. +..|++||+.++++...++.
T Consensus 280 ~~~~---------------------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 280 DLGK---------------------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp CCCS---------------------CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred cCCC---------------------CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence 1000 00112345678 99999887654 67899999999988877653
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.68 E-value=1.9e-14 Score=110.14 Aligned_cols=176 Identities=11% Similarity=0.042 Sum_probs=114.0
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeE--EecCc------CceEEEEeCCCCEEEEec------------CCCeE
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETK--FAGSS------CNDLVTYDGAGTTIISGH------------FDKKV 60 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~--~~~~~------~~~~~~~~~~~~~l~s~~------------~D~~i 60 (203)
+++|+|+++.+ ++++.++.|.+||+.+++.. ..... ....+.++|+++.|++++ .++.|
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence 57899999865 56667899999999886643 22111 223467899999988886 67999
Q ss_pred EEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceE
Q psy8891 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI 140 (203)
Q Consensus 61 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v 140 (203)
.+||+.+++.+..+.....+.. +.|+|+|+.|+++ ++.|.+||+.+++....+......
T Consensus 118 ~v~d~~~~~~~~~~~~~~~~~~-------------------~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 118 ALYDAETLSRRKAFEAPRQITM-------------------LAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EEEETTTTEEEEEEECCSSCCC-------------------EEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred EEEECCCCcEEEEEeCCCCcce-------------------eEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence 9999988877655543322222 3466777777776 678999999888776665443200
Q ss_pred EEEEecCCcE----------------------------------EEEe--ecCeeE-------EeeeEEEEEEcCCCEEE
Q psy8891 141 TSLDLSKGKY----------------------------------YFVF--AEGFKV-------QCDFTRAVFVVDDDYVA 177 (203)
Q Consensus 141 ~~~~~~~~~~----------------------------------~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~ 177 (203)
....++++.. +... ..+... ......+.++|++++++
T Consensus 177 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE
Confidence 0001111100 0000 000000 01223477899999998
Q ss_pred EecCCCcEEEEeCCCceeeeeec
Q psy8891 178 VGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 178 s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
++ ++.|++||+.+++.+..++
T Consensus 257 ~~--~~~v~~~d~~~~~~~~~~~ 277 (337)
T 1pby_B 257 GA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EE--ESEEEEEETTTTEEEEEEE
T ss_pred Ee--CCeEEEEECCCCcCcceec
Confidence 88 7999999999999888775
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.67 E-value=1.3e-14 Score=108.70 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=106.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCC-CCeEEe--cC--cCceEEEEeCCCCEEEEec--CCCeEEEEEC--CCceEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS-TETKFA--GS--SCNDLVTYDGAGTTIISGH--FDKKVRFWDF--RAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~-~~~~~~--~~--~~~~~~~~~~~~~~l~s~~--~D~~i~vwd~--~~~~~~~ 72 (203)
+++|+||+++|++++ ++.|++||+.+ .+.... .. .....+.|+|+++.|++++ .++..+||.+ ..++ ..
T Consensus 46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~ 123 (297)
T 2ojh_A 46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR 123 (297)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE
T ss_pred eeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE
Confidence 578999999999987 78999999988 654322 11 1223467899999999998 4456666655 3333 33
Q ss_pred eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEE-EeeCCCeEEEEECC--CCceEEEEeccceEEEEEecCCc
Q psy8891 73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFR--AEEKVRDIELHGKITSLDLSKGK 149 (203)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~i~iWd~~--~~~~~~~~~~~~~v~~~~~~~~~ 149 (203)
.+..+..+..++ |+|+++.|+ +++.|+.+++|++. +++..........+..+.++++.
T Consensus 124 ~~~~~~~~~~~~-------------------~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 124 LMTKNLPSYWHG-------------------WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp ECCSSSSEEEEE-------------------ECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred EeecCCCccceE-------------------ECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 333333344444 455555555 56667777777643 23222111222346666665543
Q ss_pred EEEE-eec--C-ee----------------EEeeeEEEEEEcCCCEEEEecCC-----------CcEEEEeCCCceeeee
Q psy8891 150 YYFV-FAE--G-FK----------------VQCDFTRAVFVVDDDYVAVGSID-----------GNIYVWDCNTEQVEAV 198 (203)
Q Consensus 150 ~~~~-~~~--~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d-----------~~v~~wd~~~~~~~~~ 198 (203)
..++ ... + .. ....+....++|++++|++++.+ +.|++||+.+++....
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 3222 110 0 00 01123456788999999888876 5699999998876443
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=8e-16 Score=129.91 Aligned_cols=181 Identities=7% Similarity=0.009 Sum_probs=114.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc----CceEEEEeCCCCEEEEecCC---------CeEEEEECC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS----CNDLVTYDGAGTTIISGHFD---------KKVRFWDFR 66 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~----~~~~~~~~~~~~~l~s~~~D---------~~i~vwd~~ 66 (203)
+++|+|||+++++ +.|++|++||+.+++.. ..... ....+.++||++.|++++.+ +.+++||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 5789999998776 78999999999876542 22222 13457899999999998764 788899998
Q ss_pred CceEEEeeeeC----CeEEEEEecCCCceEEEecC--------------------C--c------------------eEE
Q psy8891 67 AEEKVRDIELH----GKITSLDLSKGTETKFAGSS--------------------C--N------------------DLV 102 (203)
Q Consensus 67 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--------------------~--~------------------~~~ 102 (203)
+++. ..+... ..+..++++|++..++.... . . ..+
T Consensus 100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 8765 222211 12566677777765443211 0 0 247
Q ss_pred EEcCCCCEEEEeeCCC----------------------------------eEEEEECCCCceEEEEeccceEEEEEecCC
Q psy8891 103 TYDGAGTTIISGHFDK----------------------------------KVRFWDFRAEEKVRDIELHGKITSLDLSKG 148 (203)
Q Consensus 103 ~~~~~~~~l~s~s~d~----------------------------------~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~ 148 (203)
.|+|||+.|++++.|+ +|++||+.+++....+..+..
T Consensus 179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~--------- 249 (723)
T 1xfd_A 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD--------- 249 (723)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC---------
T ss_pred EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc---------
Confidence 7899999998887653 344444444332222211000
Q ss_pred cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC----CCcEEEEeCCCceeeeeecc
Q psy8891 149 KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI----DGNIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~v~~wd~~~~~~~~~~~~ 201 (203)
.......+....++||++++++.+. +..|++||+.++++...+..
T Consensus 250 --------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 250 --------PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp --------GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred --------CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 0000112345678899988876643 46799999999988776643
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.66 E-value=4.1e-14 Score=108.58 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=109.8
Q ss_pred ceEEcCCCCEEEEEeCC-CcEEEEeCC--CCCeE----EecCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCc---eE
Q psy8891 2 CAKFLGDPTKVVSGSCD-RTLKIWDLR--STETK----FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAE---EK 70 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D-~~v~lwdl~--~~~~~----~~~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~---~~ 70 (203)
+++|+|+++.|++++.+ +.|++|++. +++.. .........++++|+++.|++++ .++.|++||+..+ +.
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 57899999999988887 999999997 44421 12222334577899999776665 4889999999532 22
Q ss_pred EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCC-CceEE----EEec--cceEEE
Q psy8891 71 VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRA-EEKVR----DIEL--HGKITS 142 (203)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~-~~~~~----~~~~--~~~v~~ 142 (203)
+..+.....+ ..+.|+|+|+.|++++ .+++|++||+.+ ++... .+.. ...+..
T Consensus 122 ~~~~~~~~~~-------------------~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 122 VDVVEGLDGC-------------------HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp EEEECCCTTB-------------------CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred cccccCCCCc-------------------eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcce
Confidence 2222221112 2245778888888777 899999999987 54432 2222 235667
Q ss_pred EEecCCcE-EEEeec--Ce-------------eEEe-------------eeEEEEEEcCCCEEE-EecCCCcEEEEeCC
Q psy8891 143 LDLSKGKY-YFVFAE--GF-------------KVQC-------------DFTRAVFVVDDDYVA-VGSIDGNIYVWDCN 191 (203)
Q Consensus 143 ~~~~~~~~-~~~~~~--~~-------------~~~~-------------~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~ 191 (203)
+.++++.. +++... +. .... ....+.++|++++|+ ++..|+.|++||+.
T Consensus 183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 77776643 333221 10 0000 112477889998776 55689999999998
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.64 E-value=4.1e-14 Score=108.57 Aligned_cols=170 Identities=7% Similarity=0.008 Sum_probs=98.1
Q ss_pred ceEEcCCCCEEEEEeC-CCcEEEEeCCCC---CeE--EecCcCceEEEEeCCCCEEEEec-CCCeEEEEECCC-ceEEE-
Q psy8891 2 CAKFLGDPTKVVSGSC-DRTLKIWDLRST---ETK--FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRA-EEKVR- 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~---~~~--~~~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~-~~~~~- 72 (203)
+++|+|+++.|++++. ++.|++||+..+ +.. .........+.++|+++.|++++ .|+.|++||+.. ++...
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 5789999998876665 889999999422 111 12222233467899999888777 899999999987 54321
Q ss_pred ---eeee--CCeEEEEEecCCCceEEEec-CCc---------------------------------eEEEEcCCCCEEE-
Q psy8891 73 ---DIEL--HGKITSLDLSKGTETKFAGS-SCN---------------------------------DLVTYDGAGTTII- 112 (203)
Q Consensus 73 ---~~~~--~~~v~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~l~- 112 (203)
.+.. ...+..++++|++..++... ... ..+.|+|+|+.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 1121 12455566666554332211 000 0144555555444
Q ss_pred EeeCCCeEEEEECCC--Cc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEE
Q psy8891 113 SGHFDKKVRFWDFRA--EE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYV 187 (203)
Q Consensus 113 s~s~d~~i~iWd~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~ 187 (203)
+...++.|++||+.. ++ .+..+.... ....+.++|++++|++++ .++.|++
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------------------------~~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSKEGFQPTET------------------------QPRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSS------------------------SCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred EecCCCEEEEEEEcCCCCceEEeeeecCCC------------------------ccceEEECCCCCEEEEecCCCCeEEE
Confidence 333455666666542 11 111111100 123456788999887777 6899999
Q ss_pred E--eCCCcee
Q psy8891 188 W--DCNTEQV 195 (203)
Q Consensus 188 w--d~~~~~~ 195 (203)
| |..++++
T Consensus 304 ~~~d~~~g~~ 313 (343)
T 1ri6_A 304 YEIVGEQGLL 313 (343)
T ss_dssp EEEETTTTEE
T ss_pred EEEcCCCcee
Confidence 9 5556644
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.64 E-value=1.9e-13 Score=104.80 Aligned_cols=180 Identities=9% Similarity=0.023 Sum_probs=119.7
Q ss_pred eEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecC-CCeEEEEECCCceE-EEeeeeC
Q psy8891 3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEK-VRDIELH 77 (203)
Q Consensus 3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~-~~~~~~~ 77 (203)
+.|.+++.+ +++++.+++|++||+.+++... ........+.++|+++.|+.++. ++.|.+||+.+++. ...+..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 346666655 7788899999999998876532 22222225788999996666655 89999999988775 4444332
Q ss_pred CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEeccceEEEEEecCCc-EEEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELHGKITSLDLSKGK-YYFV 153 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 153 (203)
..... .+.|+|+|++|++...++ .|++||+.+++.+..+.....+..+.++++. .+++
T Consensus 83 ~~~~~------------------~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 83 QSSMA------------------DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp SSCCC------------------CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEE
T ss_pred CCCcc------------------ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEE
Confidence 22111 145777888888555553 9999999999888888777777888888764 2333
Q ss_pred eec--Ce--e---------EE----------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCCCcee---eeeec
Q psy8891 154 FAE--GF--K---------VQ----------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNTEQV---EAVLK 200 (203)
Q Consensus 154 ~~~--~~--~---------~~----------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~~~~---~~~~~ 200 (203)
... +. . .. .....+.++|+++++ +++..++.|++||+.+++. +..++
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence 321 11 1 00 112346688999865 5555789999999999988 66664
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.64 E-value=1.4e-13 Score=106.45 Aligned_cols=173 Identities=11% Similarity=0.074 Sum_probs=105.4
Q ss_pred ceEEcCCCCEEEEEe-CCCcEEEEeCCC-CCeE----EecC--c--------CceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVSGS-CDRTLKIWDLRS-TETK----FAGS--S--------CNDLVTYDGAGTTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~-~~~~----~~~~--~--------~~~~~~~~~~~~~l~s~~~D~~i~vwd~ 65 (203)
.++|+||+++|++++ .+++|++||+.. +... .... . ....+.++|+++.+++...++.|++||+
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 478999999998888 789999999963 2211 1110 0 1234788999997777777899999999
Q ss_pred C-CceEE--Eeeee--CCeEEEEEecCCCceEEEec-CCc---------------------------------eEEEEcC
Q psy8891 66 R-AEEKV--RDIEL--HGKITSLDLSKGTETKFAGS-SCN---------------------------------DLVTYDG 106 (203)
Q Consensus 66 ~-~~~~~--~~~~~--~~~v~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~ 106 (203)
. .++.. ..+.. ...+..++++|++..++... ... ..+.|+|
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 44322 11121 12456677777766443311 100 0145777
Q ss_pred CCCEE-EEeeCCCeEEEEECCCCce---EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-
Q psy8891 107 AGTTI-ISGHFDKKVRFWDFRAEEK---VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI- 181 (203)
Q Consensus 107 ~~~~l-~s~s~d~~i~iWd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~- 181 (203)
+|++| ++...+++|.+||+..... +..+..++ .....++++|++++|++++.
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG-----------------------DFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS-----------------------SCCCEEEECTTSSEEEEEETT
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC-----------------------CCcCeEEECCCCCEEEEEEcC
Confidence 77766 3444567788887752211 11111100 01234667899998888775
Q ss_pred CCcEEEE--eCCCceeee
Q psy8891 182 DGNIYVW--DCNTEQVEA 197 (203)
Q Consensus 182 d~~v~~w--d~~~~~~~~ 197 (203)
++.|.+| |..+|++..
T Consensus 307 ~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 307 TDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTEEEEEEECTTTCCEEE
T ss_pred CCcEEEEEEeCCCCeEEe
Confidence 5899999 666777664
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=8.7e-15 Score=121.00 Aligned_cols=174 Identities=11% Similarity=-0.010 Sum_probs=109.6
Q ss_pred ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCeEEe-cCc--CceEEEEeCCCCEEEEecC---CCeEEEEECCC--ceEEE
Q psy8891 2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTETKFA-GSS--CNDLVTYDGAGTTIISGHF---DKKVRFWDFRA--EEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~~~-~~~--~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~--~~~~~ 72 (203)
+++|+|||++|++++. |++++||++.+++.... ... ....+.|+|+ +.+++++. +...++|.+.. .....
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 6899999999999887 99999999866543321 111 2233567787 78887765 55667765543 21111
Q ss_pred eeeeCCeEEEEEecCCCceEE-E-ecCC-------------------ceEEEEcCCCCEEEEeeCC----CeEEEEECCC
Q psy8891 73 DIELHGKITSLDLSKGTETKF-A-GSSC-------------------NDLVTYDGAGTTIISGHFD----KKVRFWDFRA 127 (203)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~-~-~~~~-------------------~~~~~~~~~~~~l~s~s~d----~~i~iWd~~~ 127 (203)
.+.........+++++++.++ + +... .....|+|||+.|++++.| ..|++||+.+
T Consensus 105 ~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 105 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS 184 (582)
T ss_dssp ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence 222222223345555543321 1 1110 0235678889988888777 7888899887
Q ss_pred CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC--cEEEEeCCCceeeeeecc
Q psy8891 128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG--NIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~v~~wd~~~~~~~~~~~~ 201 (203)
++.. .+..+.. ......|+|||++|+++..++ .|++||++++++. .+.+
T Consensus 185 g~~~-~l~~~~~-----------------------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 185 GGLR-VFDSGEG-----------------------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp CCCE-EECCSSC-----------------------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCce-EeecCCC-----------------------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 7643 2221110 123456789999999888888 8999999998887 5554
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=122.49 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=64.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCc----CceEEEEeCCCCEEEEecC---------CCeEEEEECC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSS----CNDLVTYDGAGTTIISGHF---------DKKVRFWDFR 66 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~----~~~~~~~~~~~~~l~s~~~---------D~~i~vwd~~ 66 (203)
+++|+||++.+++ +.|++|++||+.+++... .... ....+.++||++.|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 5789999965554 569999999999876532 2111 1345789999999998876 7999999999
Q ss_pred CceEEEeeeeCCeEEEEEecCCCceEE
Q psy8891 67 AEEKVRDIELHGKITSLDLSKGTETKF 93 (203)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (203)
+++.+........+..++++|++..++
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la 125 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLA 125 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEE
T ss_pred CCccccceecCcccccceECCCCCEEE
Confidence 887631112224466677777776554
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.58 E-value=6.5e-13 Score=111.97 Aligned_cols=192 Identities=9% Similarity=0.041 Sum_probs=129.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCC-----CCeEE--ecCcC---------------ceEEEEeCCCCEEEEec----
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS-----TETKF--AGSSC---------------NDLVTYDGAGTTIISGH---- 55 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~-----~~~~~--~~~~~---------------~~~~~~~~~~~~l~s~~---- 55 (203)
+++|+|||+.|+++ .|++|++||+.+ ++... ..... ...+.|+|+++.|++++
T Consensus 125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~ 203 (706)
T 2z3z_A 125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS 203 (706)
T ss_dssp TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT
T ss_pred CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC
Confidence 57899999999995 689999999987 55432 11111 13477999999999987
Q ss_pred -----------------------------CCCeEEEEECCCceEEEeee---eCCeEEEEEecCCCceEEEecCC-----
Q psy8891 56 -----------------------------FDKKVRFWDFRAEEKVRDIE---LHGKITSLDLSKGTETKFAGSSC----- 98 (203)
Q Consensus 56 -----------------------------~D~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~----- 98 (203)
.+..|++||+.+++...... ....+..++|+|++..++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 283 (706)
T 2z3z_A 204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNE 283 (706)
T ss_dssp TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCE
T ss_pred CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCe
Confidence 44789999999887544332 22468889999988765542110
Q ss_pred ----------c------------------eEEEEcC--CCCEEEEeeCCCeEEEEECC-CCceEEEEeccc-eEEE-EEe
Q psy8891 99 ----------N------------------DLVTYDG--AGTTIISGHFDKKVRFWDFR-AEEKVRDIELHG-KITS-LDL 145 (203)
Q Consensus 99 ----------~------------------~~~~~~~--~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~~-~v~~-~~~ 145 (203)
. ..+.|+| +|+++++++.|+.+++|++. ++..++.+..+. .+.. +.+
T Consensus 284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 0 0137899 99999999999999999876 555555554432 3444 566
Q ss_pred cCCcE-EEEeecC-----eeE---------------EeeeEEEEEEcCCCEEEEecCC----CcEEEEeCCCce
Q psy8891 146 SKGKY-YFVFAEG-----FKV---------------QCDFTRAVFVVDDDYVAVGSID----GNIYVWDCNTEQ 194 (203)
Q Consensus 146 ~~~~~-~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~l~s~s~d----~~v~~wd~~~~~ 194 (203)
+++.. ++..... ..+ ...+....++|++++++..+.+ +.|++||+.+++
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 66542 2222111 011 1123456789999988776544 459999999887
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.57 E-value=2.5e-13 Score=119.50 Aligned_cols=171 Identities=9% Similarity=-0.008 Sum_probs=116.8
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecC------------cCceEEEEe-CCCCEEEEecCCCeEEEEECCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGS------------SCNDLVTYD-GAGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~------------~~~~~~~~~-~~~~~l~s~~~D~~i~vwd~~~ 67 (203)
+.+|+|||+.|++++ |+.|++||+...+... ... .....+.|+ |+++.|++++ ++.|.+|++..
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 468999999999885 8999999995433221 110 123457889 9999888887 88999999987
Q ss_pred ceEEEeeeeCC-eEEEEEecCCCceEEEec-----------------------CCceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891 68 EEKVRDIELHG-KITSLDLSKGTETKFAGS-----------------------SCNDLVTYDGAGTTIISGHFDKKVRFW 123 (203)
Q Consensus 68 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~s~s~d~~i~iW 123 (203)
++........+ .+..++|+ ++..++..+ .....+.|+|+|+.|++++.++.|++|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 76543222233 56666666 543322211 112346789999999999999999999
Q ss_pred ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC----------cEEEEeCCCc
Q psy8891 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG----------NIYVWDCNTE 193 (203)
Q Consensus 124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----------~v~~wd~~~~ 193 (203)
|+.+++.......+.. .+....|+||+++|++++.++ .|++||+.++
T Consensus 406 d~~tg~~~~~~~~~~~-----------------------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 406 DLETGKPTVIERSREA-----------------------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp ETTTCCEEEEEECSSS-----------------------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ECCCCceEEeccCCCC-----------------------CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 9988876544322210 123456789999998887754 8999999988
Q ss_pred eeeeee
Q psy8891 194 QVEAVL 199 (203)
Q Consensus 194 ~~~~~~ 199 (203)
+ +..+
T Consensus 463 ~-~~~l 467 (1045)
T 1k32_A 463 K-IFAA 467 (1045)
T ss_dssp E-EEEC
T ss_pred c-EEEe
Confidence 7 4444
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.57 E-value=1.2e-13 Score=117.03 Aligned_cols=176 Identities=8% Similarity=-0.000 Sum_probs=116.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCC---CeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRST---ETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~---~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++|+|||++|++++. ++|++||+.++ +.. .........+.|+|+++.|++++ ++.|++||+.+++.......
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 5789999999999986 99999999876 432 11222344578999999999887 46999999988766543322
Q ss_pred CCe-----------------EEEEEecCCCceEEEecCC-----------------------------------------
Q psy8891 77 HGK-----------------ITSLDLSKGTETKFAGSSC----------------------------------------- 98 (203)
Q Consensus 77 ~~~-----------------v~~~~~~~~~~~~~~~~~~----------------------------------------- 98 (203)
+.. +..+.|+|++..++.....
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 211 3567788887765443110
Q ss_pred ------------------ceEEEEcCCCCEEEEeeC-----CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891 99 ------------------NDLVTYDGAGTTIISGHF-----DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155 (203)
Q Consensus 99 ------------------~~~~~~~~~~~~l~s~s~-----d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (203)
...+.| |||+.|+.++. +..|++||+.+++....+..+.. .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~------ 334 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP---------T------ 334 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS---------S------
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC---------C------
Confidence 012467 88888886654 56899999988876544332110 0
Q ss_pred cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC-Cceeeeeec
Q psy8891 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN-TEQVEAVLK 200 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~-~~~~~~~~~ 200 (203)
. ........|+||++++++++.|+.++||..+ .++ .+.+.
T Consensus 335 --~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 335 --W--VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp --C--CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred --c--CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 0 0001234577899999999999988888765 344 55554
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.56 E-value=3.5e-13 Score=100.91 Aligned_cols=167 Identities=9% Similarity=0.080 Sum_probs=95.5
Q ss_pred EEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC-ceEEEeeeeC--CeEEEEEecC
Q psy8891 13 VSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH--GKITSLDLSK 87 (203)
Q Consensus 13 ~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-~~~~~~~~~~--~~v~~~~~~~ 87 (203)
.+++.|++|++||+.+++.. .........+.++|++++|++++ ++.|++||+.. ++.......+ ..+.
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~------ 88 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN------ 88 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS------
T ss_pred CCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc------
Confidence 34678999999999886543 22333345678999999999986 88999999988 6654333222 1122
Q ss_pred CCceEEEecCCceEEEEcCCCCEEEEee--CCCeEEEEE--CCCCceEEEEe-----------ccceEEEEEe-cCCc-E
Q psy8891 88 GTETKFAGSSCNDLVTYDGAGTTIISGH--FDKKVRFWD--FRAEEKVRDIE-----------LHGKITSLDL-SKGK-Y 150 (203)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~iWd--~~~~~~~~~~~-----------~~~~v~~~~~-~~~~-~ 150 (203)
.+.|+|+|+.|++++ .++..++|. +.+++. ..+. ..++...+.. ..+. .
T Consensus 89 -------------~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 89 -------------DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp -------------CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred -------------ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceE
Confidence 245777888888888 334555554 444332 2211 1111111111 1111 1
Q ss_pred EEEee-c-Cee-----EEeeeEEEEEEcCCCEEEEec-CCCcEEEEeCC-Cceeeeeec
Q psy8891 151 YFVFA-E-GFK-----VQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDCN-TEQVEAVLK 200 (203)
Q Consensus 151 ~~~~~-~-~~~-----~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~-~~~~~~~~~ 200 (203)
++... . +.. ....+....++|++++|+.++ .|+.+++|+++ .++.+..+.
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 11111 1 110 012345677889999877666 59999999876 455555554
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.56 E-value=8.8e-14 Score=117.26 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=46.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~ 67 (203)
+++|+|| +.++.+ .|++|++||+.+++... ........+.|+|+++.|+++ .|+.|++||+.+
T Consensus 86 ~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 86 RTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp EEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred eEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 5789999 655555 36999999998765432 222222336789999999985 789999999988
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=4.9e-12 Score=97.47 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=93.9
Q ss_pred ceEEcCCCCEEEEEe--CCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVVSGS--CDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s--~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++|+|++++++.++ .++.|.+||+.+.+... . .......+.++|+++.|+.++.++.|.+||+.+++.+..+..
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 368999999887766 48899999998766432 2 112123467889999999999999999999999988766654
Q ss_pred -----CCeEEEEEecCCCceEEEecCC-ce---------------------EEEEcCCCCEEEEee-CCCeEEEEECCCC
Q psy8891 77 -----HGKITSLDLSKGTETKFAGSSC-ND---------------------LVTYDGAGTTIISGH-FDKKVRFWDFRAE 128 (203)
Q Consensus 77 -----~~~v~~~~~~~~~~~~~~~~~~-~~---------------------~~~~~~~~~~l~s~s-~d~~i~iWd~~~~ 128 (203)
...+..+++++++..++..... +. .+.|+|+|+.++.+. .+++|.+||+.++
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 2236667777777655443221 11 135667777554444 5777777877777
Q ss_pred ceEEEEeccceE
Q psy8891 129 EKVRDIELHGKI 140 (203)
Q Consensus 129 ~~~~~~~~~~~v 140 (203)
+.+..+.....+
T Consensus 305 ~~~~~~~~~~~~ 316 (353)
T 3vgz_A 305 KVVKTFDTPTHP 316 (353)
T ss_dssp EEEEEEECCSEE
T ss_pred eEEEEEecCCCC
Confidence 666555444333
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.54 E-value=4.8e-12 Score=97.78 Aligned_cols=180 Identities=11% Similarity=0.072 Sum_probs=106.8
Q ss_pred ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCeE--Ee---cCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCceE--
Q psy8891 2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTETK--FA---GSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEK-- 70 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~~--~~---~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~~-- 70 (203)
.++|+|||+ |++++. ++.|++||+.+++.. .. .......++++|+++.|++++ .++.|++||+.....
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 478999999 666554 689999999765421 11 122234477899999888887 789999999963222
Q ss_pred -EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEE--EEec--cceEEEEE
Q psy8891 71 -VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVR--DIEL--HGKITSLD 144 (203)
Q Consensus 71 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~--~~~~--~~~v~~~~ 144 (203)
+..+...+. .|... ........+.|+|+|+.+++...+++|++||+. +++... .+.. ...+..+.
T Consensus 123 ~~~~~~~~~~------~p~~~---~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 123 LTDTVQHSGH------GPRPE---QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EEEEEECCCC------CSSTT---CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred ecceeecCCC------CCCcc---ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 222111100 00000 000011235678888866666678899999998 554322 1222 12466677
Q ss_pred ecCCcE-EEEeecC--e-----------e--EE-------------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCC
Q psy8891 145 LSKGKY-YFVFAEG--F-----------K--VQ-------------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCN 191 (203)
Q Consensus 145 ~~~~~~-~~~~~~~--~-----------~--~~-------------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~ 191 (203)
++++.. +++.... . . .. .....+.++|++++| +++..++.|.+||++
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 777643 3332211 0 0 00 012346789999977 556679999999987
No 154
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.54 E-value=2.7e-12 Score=100.39 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=111.1
Q ss_pred eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe---c------CcCceEEEEeCCCCEEEEecC--CCeEE
Q psy8891 3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA---G------SSCNDLVTYDGAGTTIISGHF--DKKVR 61 (203)
Q Consensus 3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~---~------~~~~~~~~~~~~~~~l~s~~~--D~~i~ 61 (203)
++|+||+++|+.++ .|++|.+||+.+.+.... . .....-+.++|++++|+++.. +++|.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~ 134 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG 134 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence 68999999999887 367899999987554211 1 011223678999999988864 68999
Q ss_pred EEECCCceEEEe-eeeCCe----------EEEEEecCCCceEEEec-CCceE------------------EEEcCCCCEE
Q psy8891 62 FWDFRAEEKVRD-IELHGK----------ITSLDLSKGTETKFAGS-SCNDL------------------VTYDGAGTTI 111 (203)
Q Consensus 62 vwd~~~~~~~~~-~~~~~~----------v~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~l 111 (203)
+||+.+++.+.+ +...+. ..-+.+.+++..++... ..+.+ +..++++..+
T Consensus 135 v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (361)
T 2oiz_A 135 IVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA 214 (361)
T ss_dssp EEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred EEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence 999999888776 433221 01122333333222111 00100 0112344556
Q ss_pred EEeeCCCeEEEEECCCCce--EEEEec------------cc-eEEEEEecCCcE-------------------EEEe-e-
Q psy8891 112 ISGHFDKKVRFWDFRAEEK--VRDIEL------------HG-KITSLDLSKGKY-------------------YFVF-A- 155 (203)
Q Consensus 112 ~s~s~d~~i~iWd~~~~~~--~~~~~~------------~~-~v~~~~~~~~~~-------------------~~~~-~- 155 (203)
+..+.+++|.++|+..+.. ...+.. .+ +...+.-..+.. +.+. .
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 6666777788888754321 111110 00 001121111111 1110 0
Q ss_pred cCeeE-----EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc--eeeeeec
Q psy8891 156 EGFKV-----QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE--QVEAVLK 200 (203)
Q Consensus 156 ~~~~~-----~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~--~~~~~~~ 200 (203)
.+..+ .. ...+.++|++++|+++.. ++|.+||+.++ ++++++.
T Consensus 295 t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 295 TKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp TTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred CCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence 01000 11 346778999999998887 99999999999 9998873
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=2.9e-12 Score=108.98 Aligned_cols=91 Identities=7% Similarity=0.127 Sum_probs=68.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC----ceE--EEEeCCCCEEEEecCC---------CeEEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC----NDL--VTYDGAGTTIISGHFD---------KKVRFWD 64 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~----~~~--~~~~~~~~~l~s~~~D---------~~i~vwd 64 (203)
+++|+||++.++++ |++|++||+.+++.. +..... ... +.++||++.|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 68999999988886 999999999987643 222211 112 6789999999998877 5567999
Q ss_pred CCCceEEEeeeeCCeEEEEEecCCCceEEE
Q psy8891 65 FRAEEKVRDIELHGKITSLDLSKGTETKFA 94 (203)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (203)
+.+++........+.+...+|+|++..++.
T Consensus 99 ~~~~~~~~l~~~~~~~~~~~~SPdG~~la~ 128 (740)
T 4a5s_A 99 LNKRQLITEERIPNNTQWVTWSPVGHKLAY 128 (740)
T ss_dssp TTTTEECCSSCCCTTEEEEEECSSTTCEEE
T ss_pred CCCCcEEEcccCCCcceeeEECCCCCEEEE
Confidence 999886543333466889999999887653
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.48 E-value=5.3e-12 Score=111.05 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=68.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCC----------eEEEEECCCc
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDK----------KVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~----------~i~vwd~~~~ 68 (203)
+++|+|||++|++++.|++|++||+.+++.... +......+.|+|++++|++++.++ .|++||+.++
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 578999999999999999999999988764321 222234578999999998887654 9999999887
Q ss_pred eEEEeeeeC-CeEEEEEecCCCceEEEe
Q psy8891 69 EKVRDIELH-GKITSLDLSKGTETKFAG 95 (203)
Q Consensus 69 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~ 95 (203)
+ +..+..+ ..+..++|++++..++..
T Consensus 463 ~-~~~l~~~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 463 K-IFAATTENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp E-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred c-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence 7 4444333 446677777777655443
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.48 E-value=9.3e-12 Score=96.74 Aligned_cols=161 Identities=9% Similarity=0.082 Sum_probs=99.8
Q ss_pred ceEEcCCCCEEEEEe-CCCcEEEEeCCCCC-------e-------EEe--cCcCceEEEEeCCCCEEEEec-CCCeEEEE
Q psy8891 2 CAKFLGDPTKVVSGS-CDRTLKIWDLRSTE-------T-------KFA--GSSCNDLVTYDGAGTTIISGH-FDKKVRFW 63 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~~~-------~-------~~~--~~~~~~~~~~~~~~~~l~s~~-~D~~i~vw 63 (203)
+++|+|||++|+.++ .++.|++|++.... . ... .......+.++|+++.|+.++ .++.|.+|
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 378999999765554 58999999887422 1 111 111223467899999777666 69999999
Q ss_pred ECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--CeEEEEECC--CCce--EEEEecc
Q psy8891 64 DFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD--KKVRFWDFR--AEEK--VRDIELH 137 (203)
Q Consensus 64 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--~~i~iWd~~--~~~~--~~~~~~~ 137 (203)
|+.+++.... ..+...+... .....+.|+|+|++|+.+..+ ++|++|++. +++. +..+...
T Consensus 239 ~~~~g~~~~~-------~~~~~~~~~~------~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 239 RYADGMLDEI-------QTVAADTVNA------QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp EEETTEEEEE-------EEEESCSSCC------CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred EecCCceEEe-------EEEecCCCCC------CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 9986643211 1111111100 001235688899888776665 899999986 3332 1111110
Q ss_pred ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEEE--eCCCceeeeee
Q psy8891 138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYVW--DCNTEQVEAVL 199 (203)
Q Consensus 138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~w--d~~~~~~~~~~ 199 (203)
. ....+.++|++++|++++ .++.|.+| |..+|++....
T Consensus 306 ~------------------------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 306 I------------------------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp S------------------------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred C------------------------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 0 122456789999888877 67899995 55678776654
No 158
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=4.1e-11 Score=90.38 Aligned_cols=166 Identities=11% Similarity=0.129 Sum_probs=114.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC--CeE
Q psy8891 7 GDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKI 80 (203)
Q Consensus 7 ~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~--~~v 80 (203)
..++.|++++.|+.|++||.++++.. +.... ....+.+.|+++.+++ .++.|..||. +++.++.+... ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 35688999999999999999887653 22221 2234667899998884 5788999998 78888887754 357
Q ss_pred EEEEecCCCceEEEecC-CceEEEEc----------------------------CCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891 81 TSLDLSKGTETKFAGSS-CNDLVTYD----------------------------GAGTTIISGHFDKKVRFWDFRAEEKV 131 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------------~~~~~l~s~s~d~~i~iWd~~~~~~~ 131 (203)
.+..+.+++..+++... ...+..++ ++|+++++...+++|..||.. |+.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 77777777776666544 33333333 345566666666777777766 6666
Q ss_pred EEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 132 RDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 132 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.++.....+. .+...+++..+++++.++.|..+|..+|+++-++.
T Consensus 159 w~~~~~~~~~------------------------~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 159 NSVKLSGTPF------------------------SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEECSSCCC------------------------EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCcc------------------------ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 5554432111 12334688899998888899999999999987764
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.46 E-value=5.8e-13 Score=110.06 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=101.1
Q ss_pred eEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC----CeEEEEECCCceEEEeeeeC
Q psy8891 3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D----~~i~vwd~~~~~~~~~~~~~ 77 (203)
.+|+||++. +++++.++.+.+||+.+++...........+.++|||+.|++++.| +.|++||+.+++.. .+..+
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~ 193 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG 193 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC
Confidence 468888863 3343444455599998765422111111456789999999988887 78999999887654 33322
Q ss_pred -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--eEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEE
Q psy8891 78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFV 153 (203)
Q Consensus 78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 153 (203)
+.+.. ..|+|||+.|+++..++ +|++||+.+++.. .+..+. .+..+.
T Consensus 194 ~~~~~~-------------------~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~--------- 244 (582)
T 3o4h_A 194 EGSFSS-------------------ASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR--------- 244 (582)
T ss_dssp SCEEEE-------------------EEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC---------
T ss_pred CCcccc-------------------ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh---------
Confidence 33333 45777888899888888 8999999987764 222111 010000
Q ss_pred eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891 154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~ 197 (203)
........++||+..+++++.|+++++|++ |++++
T Consensus 245 -------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 245 -------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp -------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred -------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 001123347789988999999999999998 66654
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=1.3e-10 Score=90.79 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=110.7
Q ss_pred eEEcCCCCEEEEEeC-CCc--EEEEeCCCCCeEEe--cCcCc-eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 3 AKFLGDPTKVVSGSC-DRT--LKIWDLRSTETKFA--GSSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~-D~~--v~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
.+|+|||++|+.++. ++. |.+||+.+++.... ..... ....|+|+++.|+.++.++.|++||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 679999999998887 674 88889887654322 11111 1247899999999999999999999998876544443
Q ss_pred CCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEE----------------------eeCCCeEEEEECCCCceEEE
Q psy8891 77 HGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS----------------------GHFDKKVRFWDFRAEEKVRD 133 (203)
Q Consensus 77 ~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------------------~s~d~~i~iWd~~~~~~~~~ 133 (203)
+.. +....+ .++++++.++. ...+..|.+||+.+++....
T Consensus 121 ~~~~~~~~~~-----------------~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 121 PAEWVGYGTW-----------------VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp CTTEEEEEEE-----------------EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred hhhcccccce-----------------eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 322 211111 12344444442 33457899999998876544
Q ss_pred EeccceEEEEEecC-CcEEEEe-ecC-----e-eE----------------E--eeeEEEEEEcCCCEEEEecC-CC---
Q psy8891 134 IELHGKITSLDLSK-GKYYFVF-AEG-----F-KV----------------Q--CDFTRAVFVVDDDYVAVGSI-DG--- 183 (203)
Q Consensus 134 ~~~~~~v~~~~~~~-~~~~~~~-~~~-----~-~~----------------~--~~~~~~~~~~~~~~l~s~s~-d~--- 183 (203)
......+..+.+++ +...++. ..+ . .+ . ..+....++||++.|+..+. ++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 44444566677777 4433321 110 0 00 0 12334578999997765443 22
Q ss_pred -cEEEEeCCCceeee
Q psy8891 184 -NIYVWDCNTEQVEA 197 (203)
Q Consensus 184 -~v~~wd~~~~~~~~ 197 (203)
.|++||+.+++...
T Consensus 264 ~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 264 RFIYSADPETLENRQ 278 (388)
T ss_dssp EEEEEECTTTCCEEE
T ss_pred ceEEEEecCCCceEE
Confidence 39999999887543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.40 E-value=5.7e-11 Score=92.76 Aligned_cols=173 Identities=8% Similarity=0.055 Sum_probs=101.0
Q ss_pred ceEEcCCCCE--EEEEe-------------CCCcEEEEeCCC-CCeE--Ee-----cCcCceEEEEeCCCCEEEEecC-C
Q psy8891 2 CAKFLGDPTK--VVSGS-------------CDRTLKIWDLRS-TETK--FA-----GSSCNDLVTYDGAGTTIISGHF-D 57 (203)
Q Consensus 2 ~~~~~~~~~~--l~t~s-------------~D~~v~lwdl~~-~~~~--~~-----~~~~~~~~~~~~~~~~l~s~~~-D 57 (203)
+++|+|||++ +++++ .++++++|++.. ++.. .. .......+.++|+++.|++++. +
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 3678999994 55664 699999999974 4321 11 1222345778999998887654 6
Q ss_pred CeEEEEECC-CceEE--Eeeee---CCeEEEEEecCCCceEEEecC-C--------------------------------
Q psy8891 58 KKVRFWDFR-AEEKV--RDIEL---HGKITSLDLSKGTETKFAGSS-C-------------------------------- 98 (203)
Q Consensus 58 ~~i~vwd~~-~~~~~--~~~~~---~~~v~~~~~~~~~~~~~~~~~-~-------------------------------- 98 (203)
+.|++||+. +++.. ..+.. ...+..++++|++..++.... .
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~ 246 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR 246 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence 899999998 56532 23321 234666777766654332110 0
Q ss_pred ---------ceEEE-EcCCCCEEEEeeCCC------eEEEEECC-CCceEEEEeccceEEEEEecCCcEEEEeecCeeEE
Q psy8891 99 ---------NDLVT-YDGAGTTIISGHFDK------KVRFWDFR-AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ 161 (203)
Q Consensus 99 ---------~~~~~-~~~~~~~l~s~s~d~------~i~iWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 161 (203)
...+. |+|+|++|+++..+. +|++|++. +++....... +....
T Consensus 247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~------~~~~~-------------- 306 (365)
T 1jof_A 247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL------SPTPT-------------- 306 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE------EECSS--------------
T ss_pred ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee------eecCC--------------
Confidence 11234 667776666554322 67777764 3332211000 00000
Q ss_pred eeeEEEEEEc---CCCEEEEecCC-CcEEEEeCCCce
Q psy8891 162 CDFTRAVFVV---DDDYVAVGSID-GNIYVWDCNTEQ 194 (203)
Q Consensus 162 ~~~~~~~~~~---~~~~l~s~s~d-~~v~~wd~~~~~ 194 (203)
.....++++| ++++|+++..+ ++|++|+.+...
T Consensus 307 ~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 0012345678 79999998874 899999987653
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.40 E-value=7.5e-10 Score=83.18 Aligned_cols=191 Identities=10% Similarity=0.149 Sum_probs=119.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC-------cCceEEEE-eCCCCEEEEecC-CCeEEEEECCCceEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS-------SCNDLVTY-DGAGTTIISGHF-DKKVRFWDFRAEEKV 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~-------~~~~~~~~-~~~~~~l~s~~~-D~~i~vwd~~~~~~~ 71 (203)
++++++++..+++.+.++.|++||....... +... .....+++ +++++.+++... ++.|++|| .+++.+
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~ 112 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV 112 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence 4678999998898889999999998743222 1110 11233556 456655555533 89999999 556555
Q ss_pred EeeeeC--CeEEEEEecCCCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891 72 RDIELH--GKITSLDLSKGTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDKKVRFWDF 125 (203)
Q Consensus 72 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~ 125 (203)
..+... ..+..+++.+++...++..... ..++++++|+++++...++.|++||.
T Consensus 113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 192 (286)
T 1q7f_A 113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY 192 (286)
T ss_dssp EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC
Confidence 554321 3467777777665333322111 22566778887777777899999997
Q ss_pred CCCceEEEEecc---ceEEEEEecCCcEEEEeecCe--eEE-------------e-----eeEEEEEEcCCCEEEEecCC
Q psy8891 126 RAEEKVRDIELH---GKITSLDLSKGKYYFVFAEGF--KVQ-------------C-----DFTRAVFVVDDDYVAVGSID 182 (203)
Q Consensus 126 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~--~~~-------------~-----~~~~~~~~~~~~~l~s~s~d 182 (203)
. ++.+..+... ..+..+.++++..+++...+. .+. . ....+++.|+++++++ +.|
T Consensus 193 ~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 193 E-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp T-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred C-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence 4 5555555443 346777777655544443211 110 0 1234667888887777 579
Q ss_pred CcEEEEeCCCcee
Q psy8891 183 GNIYVWDCNTEQV 195 (203)
Q Consensus 183 ~~v~~wd~~~~~~ 195 (203)
++|++|+.....+
T Consensus 271 ~~v~v~~~~~~~p 283 (286)
T 1q7f_A 271 YRLYIYRYVQLAP 283 (286)
T ss_dssp TEEEEEECSCCCC
T ss_pred CeEEEEEcccccc
Confidence 9999999876544
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.38 E-value=1.3e-10 Score=90.79 Aligned_cols=178 Identities=11% Similarity=0.007 Sum_probs=110.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-c--eEEEEeCCCCEEEE----------------------e
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSC-N--DLVTYDGAGTTIIS----------------------G 54 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~--~~~~~~~~~~~l~s----------------------~ 54 (203)
+.+|+||++.|+.++.++.|++||+.+++... ..... . .....++++..++. .
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 46899999999999999999999999876432 22111 1 11234788888763 3
Q ss_pred cCCCeEEEEECCCceEEEeeeeCCeEEEEEecC-CCceEEEecC------C------------------------ceEEE
Q psy8891 55 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK-GTETKFAGSS------C------------------------NDLVT 103 (203)
Q Consensus 55 ~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~------~------------------------~~~~~ 103 (203)
+.+..|.+||+.+++..........+..+.++| ++..++.... . .....
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 456789999999887654444555677788888 7665443211 0 01136
Q ss_pred EcCCCCEEEEeeCC-----CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEE
Q psy8891 104 YDGAGTTIISGHFD-----KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV 178 (203)
Q Consensus 104 ~~~~~~~l~s~s~d-----~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 178 (203)
|+|+|+.|+..+.+ ..|.+||+.+++........... ..... .....++||++.|+.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~~~-----------------~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS-HLMSN-----------------YDGSLMVGDGSDAPV 306 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE-EEEEC-----------------TTSSEEEEEECCC--
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce-eeeec-----------------CCCCeEccCCCccee
Confidence 88999877665442 23999999887643222221100 00000 011246788877664
Q ss_pred e---------cCCCcEEEEeCCCceeee
Q psy8891 179 G---------SIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 179 ~---------s~d~~v~~wd~~~~~~~~ 197 (203)
. ..+..|++||+.++++..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCceEE
Confidence 3 456789999999887644
No 164
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.36 E-value=2.2e-11 Score=102.83 Aligned_cols=113 Identities=6% Similarity=-0.035 Sum_probs=75.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc-------------------CceEEEEeCCCCEEEEecCCC--
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS-------------------CNDLVTYDGAGTTIISGHFDK-- 58 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~-------------------~~~~~~~~~~~~~l~s~~~D~-- 58 (203)
+++|||||++|+.++. ++|++||+.+++.. ..... ....+.|+||++.|++++.|+
T Consensus 118 ~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~ 196 (723)
T 1xfd_A 118 YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (723)
T ss_dssp BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc
Confidence 4789999999999986 89999999875532 21111 113578999999999987653
Q ss_pred --------------------------------eEEEEECCCceEEEeeeeC-------CeEEEEEecCCCceEEEecCCc
Q psy8891 59 --------------------------------KVRFWDFRAEEKVRDIELH-------GKITSLDLSKGTETKFAGSSCN 99 (203)
Q Consensus 59 --------------------------------~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~ 99 (203)
.|++||+.+++....+..+ ..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~----------------- 259 (723)
T 1xfd_A 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM----------------- 259 (723)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE-----------------
T ss_pred cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE-----------------
Confidence 6777777666543333221 12333
Q ss_pred eEEEEcCCCCEEEEee----CCCeEEEEECCCCceEEEE
Q psy8891 100 DLVTYDGAGTTIISGH----FDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 100 ~~~~~~~~~~~l~s~s----~d~~i~iWd~~~~~~~~~~ 134 (203)
+.|+|||+.|++.+ .+..|++||+.+++....+
T Consensus 260 --~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 260 --VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp --EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred --EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 45666776665554 2368999999988765433
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.35 E-value=1.1e-09 Score=84.96 Aligned_cols=186 Identities=8% Similarity=0.035 Sum_probs=104.4
Q ss_pred ceEEcCCCCEEEEEeCC----CcEEEEeCCC--CCeE--E--e-cCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCce
Q psy8891 2 CAKFLGDPTKVVSGSCD----RTLKIWDLRS--TETK--F--A-GSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEE 69 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D----~~v~lwdl~~--~~~~--~--~-~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~ 69 (203)
.++|+||+++|++++.+ +.|++|++.. ++.. . . .......+.+ +++.|++++ .++.|.+|++....
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence 47899999999999986 7999999865 3321 1 1 1111122333 777777666 68899999997654
Q ss_pred EEEeeeeCCeEEEEEecCCCceE-EEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCce------E------EE--
Q psy8891 70 KVRDIELHGKITSLDLSKGTETK-FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEK------V------RD-- 133 (203)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~------~------~~-- 133 (203)
.+..+.. .+.....+... .........+.|+|+|+.|+.++ .++.|++|++..... + ..
T Consensus 132 ~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 132 ALLPASD-----VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp CBCSCSE-----EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred cCcccce-----eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 3322110 00000000000 00000012356888888666555 478999998875431 1 11
Q ss_pred EeccceEEEEEecCCcE-EEEeecC-eeE------------Ee----------eeEEEEEEcCCCEEEEecC--CCcEEE
Q psy8891 134 IELHGKITSLDLSKGKY-YFVFAEG-FKV------------QC----------DFTRAVFVVDDDYVAVGSI--DGNIYV 187 (203)
Q Consensus 134 ~~~~~~v~~~~~~~~~~-~~~~~~~-~~~------------~~----------~~~~~~~~~~~~~l~s~s~--d~~v~~ 187 (203)
......+..+.++++.. +++.... ..+ .. ....+.++|++++|+.+.. ++.|.+
T Consensus 207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 22223466777777643 3333211 000 00 0125678999998866665 489999
Q ss_pred EeCC--Cce
Q psy8891 188 WDCN--TEQ 194 (203)
Q Consensus 188 wd~~--~~~ 194 (203)
|+++ +++
T Consensus 287 ~~~~~~~g~ 295 (361)
T 3scy_A 287 FKVDETNGT 295 (361)
T ss_dssp EEECTTTCC
T ss_pred EEEcCCCCc
Confidence 9985 454
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.34 E-value=9.2e-11 Score=91.57 Aligned_cols=160 Identities=9% Similarity=0.055 Sum_probs=97.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCC-CCCeE--Ee--cCcCceEEEEeCCCC--EEEEec-------------CCCeEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLR-STETK--FA--GSSCNDLVTYDGAGT--TIISGH-------------FDKKVR 61 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~-~~~~~--~~--~~~~~~~~~~~~~~~--~l~s~~-------------~D~~i~ 61 (203)
.++|+||+++|++++.+ +|++||+. +++.. .. .......+.++|+++ ++++++ .+++++
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 47899999999999998 99999996 54432 11 111111245788888 456664 799999
Q ss_pred EEECCC-ceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECC-CCceEEEEeccc
Q psy8891 62 FWDFRA-EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFR-AEEKVRDIELHG 138 (203)
Q Consensus 62 vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~-~~~~~~~~~~~~ 138 (203)
+|++.. ++....+.. +... . ......+.|+|+|++|+++.. +++|++||+. +++......
T Consensus 123 v~~~~~~g~~~~~~~~------~~~~-~-------~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--- 185 (365)
T 1jof_A 123 VFSVSETGKLEKNVQN------YEYQ-E-------NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS--- 185 (365)
T ss_dssp EEEECTTCCEEEEEEE------EECC-T-------TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---
T ss_pred EEccCCCCcCcceEee------EEeC-C-------CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee---
Confidence 999974 444322221 0000 0 001122457788888877654 6799999998 665421110
Q ss_pred eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-CCcEEEEeCC--Ccee
Q psy8891 139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCN--TEQV 195 (203)
Q Consensus 139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~--~~~~ 195 (203)
+.... .+ .....+.|+|+++++++++. +++|.+|+.+ +|++
T Consensus 186 ----~~~~~--------~g----~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 186 ----VDAPD--------PG----DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp ----EECSS--------TT----CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ----EecCC--------CC----CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 11000 00 01234567899998877765 7899999765 5654
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.33 E-value=3e-11 Score=101.12 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=99.8
Q ss_pred ceEEcCCCCEEEEEeCC----------CcEEEEeCCC------CCeEEec---CcCceEEEEeCCCCEEEEecCC-----
Q psy8891 2 CAKFLGDPTKVVSGSCD----------RTLKIWDLRS------TETKFAG---SSCNDLVTYDGAGTTIISGHFD----- 57 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D----------~~v~lwdl~~------~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D----- 57 (203)
+++|+|||+.|++++.| .+|++||+.+ ++..... ......+.++||++.|+.++.+
T Consensus 134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 46899999999999887 5899999987 4432211 1112235789999999888755
Q ss_pred ---CeEEEEECC-Cc---eEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--eEEEEECCC
Q psy8891 58 ---KKVRFWDFR-AE---EKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRA 127 (203)
Q Consensus 58 ---~~i~vwd~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~i~iWd~~~ 127 (203)
..|++||+. ++ +....... ...+.. ..|+|||++++++..++ .|.+||+.+
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~-------------------~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ-------------------AEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE-------------------EEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceEcc-------------------eEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 379999998 45 22222222 123333 35677778777888888 566666655
Q ss_pred CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEE--eCCCceeeeeec
Q psy8891 128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVW--DCNTEQVEAVLK 200 (203)
Q Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~w--d~~~~~~~~~~~ 200 (203)
++.......+..+....+++ ......++++++++++++. +.++|| |..+++ ++.+.
T Consensus 275 ~~~~~l~~~~~~~~~p~w~~---------------~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 275 GAATQLCRREEEFAGPLWTP---------------GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp CCEEESSCCSSBSSCCCCST---------------TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred CceeecccccccccCccccc---------------cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 55322111111110000000 0123456678889999988 999999 666565 44443
No 168
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.33 E-value=9.3e-12 Score=105.20 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=53.6
Q ss_pred ceEEcCCCCEEEEEeC---------CCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 2 CAKFLGDPTKVVSGSC---------DRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~---------D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
+++|||||++|++++. |++|++||+.+++.. .........+.|+|||+.|+++. |+.|++||+.+++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 5789999999999876 799999999876541 11112234478999999999885 78999999988765
Q ss_pred E
Q psy8891 71 V 71 (203)
Q Consensus 71 ~ 71 (203)
.
T Consensus 143 ~ 143 (719)
T 1z68_A 143 F 143 (719)
T ss_dssp E
T ss_pred E
Confidence 4
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.33 E-value=2.4e-09 Score=82.36 Aligned_cols=191 Identities=11% Similarity=0.059 Sum_probs=122.6
Q ss_pred ceEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCCeEEe-c-C--cCceEEEEeCCCCEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCD------------------------RTLKIWDLRSTETKFA-G-S--SCNDLVTYDGAGTTIIS 53 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D------------------------~~v~lwdl~~~~~~~~-~-~--~~~~~~~~~~~~~~l~s 53 (203)
+++++|+|+.+++.+.+ ++|.+||..+++.... . . ....-++++++++++++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~ 107 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT 107 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence 57899999999998887 4799999987664322 1 1 12234678899998899
Q ss_pred ecCCCeEEEEECCCce-EEEeeee----------CCeEEEEEecC-CCceEEEec-CCce--------------------
Q psy8891 54 GHFDKKVRFWDFRAEE-KVRDIEL----------HGKITSLDLSK-GTETKFAGS-SCND-------------------- 100 (203)
Q Consensus 54 ~~~D~~i~vwd~~~~~-~~~~~~~----------~~~v~~~~~~~-~~~~~~~~~-~~~~-------------------- 100 (203)
...++.|++||..... .+..+.. -.....+++.+ ++...++.. ....
T Consensus 108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG 187 (329)
T ss_dssp ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence 8899999999986542 3333321 02467778887 444443332 2222
Q ss_pred ------------EEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEEEEee---------
Q psy8891 101 ------------LVTYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYYFVFA--------- 155 (203)
Q Consensus 101 ------------~~~~~~~-~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~--------- 155 (203)
-++++|+ +.++++...+++|++||..+++.+..+... ..+..+.++++..+....
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEP 267 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCC
T ss_pred CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCC
Confidence 2456676 666666677889999999888887776432 234555555521111110
Q ss_pred ---------cCeeE---------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891 156 ---------EGFKV---------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 156 ---------~~~~~---------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~ 192 (203)
.+... ......++++|++..+++...++.|++|++..
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 01000 01134567889998888999999999999864
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.31 E-value=1.4e-09 Score=89.92 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=115.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECC--CceEEEeeeeCCeEEE
Q psy8891 7 GDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR--AEEKVRDIELHGKITS 82 (203)
Q Consensus 7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~--~~~~~~~~~~~~~v~~ 82 (203)
+.+..+++...+++|.++|..+.+... ........+.++|+++++++++.|+.|.+||+. +.+.+.++........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 344567888899999999999876532 222222346789999999999999999999996 6666666654333444
Q ss_pred EEecCCCceEEEecCCceEEEEc-CCCCEEEEeeC-CCeEEEEECCCCceEEEEeccc------------eEEEEEecCC
Q psy8891 83 LDLSKGTETKFAGSSCNDLVTYD-GAGTTIISGHF-DKKVRFWDFRAEEKVRDIELHG------------KITSLDLSKG 148 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~~~~------------~v~~~~~~~~ 148 (203)
+++++ |. |+|++++.+.+ +++|.++|..+.+.++.+...+ .+..+..+..
T Consensus 245 ia~s~----------------~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 245 IETSK----------------MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp EEECC----------------STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred eEEcc----------------ccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 44431 00 46667766655 5899999999988888776432 2344443332
Q ss_pred cEEEE-eec--CeeEEe-----------------eeEEEEEEcCCCEEEEec-CCCcEEEEeCCCceeeeeec
Q psy8891 149 KYYFV-FAE--GFKVQC-----------------DFTRAVFVVDDDYVAVGS-IDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 149 ~~~~~-~~~--~~~~~~-----------------~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~~~~~~~~~ 200 (203)
...+. ... +..... ......|+|++++|+++. .++.|.++|+.+++++..++
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 21111 110 110000 111345889999876655 68899999999999888764
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=8.9e-11 Score=91.78 Aligned_cols=191 Identities=10% Similarity=-0.089 Sum_probs=112.9
Q ss_pred ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeEEec--CcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891 2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETKFAG--SSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE 75 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~~~~--~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~ 75 (203)
+++|+|||++|+..+.+ ..|.+||+.+++..... ... .....|+|+++.|+.++.++.|++||+..++......
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 46799999998776543 46888898876543211 111 1225689999999999999999999998876544333
Q ss_pred eCCeEEEEEecCCCceEEEecCCceE------EEEcCCCCEEEEe-----eCCCeEEEEECCCCceEEEEeccceEEEEE
Q psy8891 76 LHGKITSLDLSKGTETKFAGSSCNDL------VTYDGAGTTIISG-----HFDKKVRFWDFRAEEKVRDIELHGKITSLD 144 (203)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~s~-----s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~ 144 (203)
.+.. +.+++..++........ ..|+|+++.++.. ..+..|.+||+.+++..........+..+.
T Consensus 120 ~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 120 VDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp CCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred cccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 2221 11111111111110000 1357777776654 356789999999887654444334455566
Q ss_pred ecC-CcE-EEEeecC----------------ee---E-----EeeeEEEEEEcCCCEEEEecCC-----CcEEEEeCCCc
Q psy8891 145 LSK-GKY-YFVFAEG----------------FK---V-----QCDFTRAVFVVDDDYVAVGSID-----GNIYVWDCNTE 193 (203)
Q Consensus 145 ~~~-~~~-~~~~~~~----------------~~---~-----~~~~~~~~~~~~~~~l~s~s~d-----~~v~~wd~~~~ 193 (203)
+++ +.. +.....+ .. . ...+....++|++++|+.++.+ +.|++||+.++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 665 322 2211110 00 0 0123345788999987776554 44999999988
Q ss_pred eeee
Q psy8891 194 QVEA 197 (203)
Q Consensus 194 ~~~~ 197 (203)
+...
T Consensus 275 ~~~~ 278 (396)
T 3c5m_A 275 ENEE 278 (396)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 7654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.28 E-value=7.2e-10 Score=86.58 Aligned_cols=169 Identities=8% Similarity=-0.061 Sum_probs=102.2
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCc----eE----------------EEEeCCCCEEEEe-----c
Q psy8891 3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN----DL----------------VTYDGAGTTIISG-----H 55 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~----~~----------------~~~~~~~~~l~s~-----~ 55 (203)
..|+|||++|+.++.++.|++||+.+++.. ....... .. ..++|+++.++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 679999999999999999999999876532 1111110 00 1234555544433 4
Q ss_pred CCCeEEEEECCCceEEEeeeeCCeEEEEEecC-CCceEEEecC----------------------------C--ceEEEE
Q psy8891 56 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSK-GTETKFAGSS----------------------------C--NDLVTY 104 (203)
Q Consensus 56 ~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~----------------------------~--~~~~~~ 104 (203)
.+..|.+||+.+++..........+..+.++| ++..++.... . .....|
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 56789999998877654444445566666666 4443322100 0 011467
Q ss_pred cCCCCEEEEeeCC-----CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEc-CCCEEEE
Q psy8891 105 DGAGTTIISGHFD-----KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV-DDDYVAV 178 (203)
Q Consensus 105 ~~~~~~l~s~s~d-----~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s 178 (203)
+|+|+.|+.++.+ +.|.+||+.+++......... .. ..++| +++++++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-------------------------~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-------------------------CS-HLMSNFDGSLMVG 299 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-------------------------EE-EEEECSSSSEEEE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-------------------------CC-CCccCCCCceEEE
Confidence 8888877666544 448888887665422111110 01 44667 8888777
Q ss_pred ec----------------CCCcEEEEeCCCceeee
Q psy8891 179 GS----------------IDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 179 ~s----------------~d~~v~~wd~~~~~~~~ 197 (203)
++ .+..|++||+.++++..
T Consensus 300 ~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (396)
T 3c5m_A 300 DGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK 334 (396)
T ss_dssp EECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred ecCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence 54 34789999998877543
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.27 E-value=4.4e-10 Score=86.22 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=51.4
Q ss_pred ceEEcCCCCEEEEEeCC------------CcEEEEeCCCCC---e--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCD------------RTLKIWDLRSTE---T--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D------------~~v~lwdl~~~~---~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd 64 (203)
+++|+|||++|++++.+ +.|.+||+.+++ . ..........+.++|+++ ++.++.+ |++||
T Consensus 96 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~--i~~~d 172 (349)
T 1jmx_B 96 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGPD--IYKMD 172 (349)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESSS--EEEEC
T ss_pred ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccCc--EEEEe
Confidence 57899999999998866 999999997632 1 122222233466899998 6555444 99999
Q ss_pred CCCceEEEeeee
Q psy8891 65 FRAEEKVRDIEL 76 (203)
Q Consensus 65 ~~~~~~~~~~~~ 76 (203)
+.+++.+..+..
T Consensus 173 ~~~~~~~~~~~~ 184 (349)
T 1jmx_B 173 VKTGKYTVALPL 184 (349)
T ss_dssp TTTCCEEEEECS
T ss_pred CCCCceeccccc
Confidence 998887665543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.22 E-value=7.6e-10 Score=92.59 Aligned_cols=157 Identities=9% Similarity=-0.010 Sum_probs=96.0
Q ss_pred eEEc--CCCCE-EEEEeC-CCcEEEEeCC--C-CCe-EEec------CcCceEEEEeCCCCEEEEecCC----------C
Q psy8891 3 AKFL--GDPTK-VVSGSC-DRTLKIWDLR--S-TET-KFAG------SSCNDLVTYDGAGTTIISGHFD----------K 58 (203)
Q Consensus 3 ~~~~--~~~~~-l~t~s~-D~~v~lwdl~--~-~~~-~~~~------~~~~~~~~~~~~~~~l~s~~~D----------~ 58 (203)
.+|+ |||++ |+.++. +..|.+|++. + ++. .... ......+.|+|+++.|++++.| .
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 3455 99998 765554 5667777776 2 332 2222 1123346799999999999887 5
Q ss_pred eEEEEECCC------ceEEEee-eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--------eEEEE
Q psy8891 59 KVRFWDFRA------EEKVRDI-ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--------KVRFW 123 (203)
Q Consensus 59 ~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--------~i~iW 123 (203)
.|++||+.. ++..... ..+..+.. ..|+|||+.|+.++.++ .|++|
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTG-------------------PRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECC-------------------CEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccC-------------------ceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 899999987 4432211 11121211 35788888888887653 79999
Q ss_pred ECC-CCc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC--cEEEEeCCCceeeee
Q psy8891 124 DFR-AEE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG--NIYVWDCNTEQVEAV 198 (203)
Q Consensus 124 d~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~v~~wd~~~~~~~~~ 198 (203)
|+. +++ ....+.... ........++||+++++++..|+ .|.+||+.++++...
T Consensus 223 d~~~~g~~~~~~~l~~~~----------------------~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l 280 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGP----------------------EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL 280 (662)
T ss_dssp EECTTSCEEEEEEEEEET----------------------TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES
T ss_pred EECCCCcccccEEeCCCC----------------------CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec
Confidence 998 452 111111100 00122345778999888888888 666677767776554
Q ss_pred ec
Q psy8891 199 LK 200 (203)
Q Consensus 199 ~~ 200 (203)
..
T Consensus 281 ~~ 282 (662)
T 3azo_A 281 CR 282 (662)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.21 E-value=2.5e-09 Score=90.28 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=71.6
Q ss_pred ceEEcCCCCEEE-----EEeCCCcEEEEeCCCCCeE-Ee-cCcCc-eEEEEeCCCCEEEEecCCCe-------------E
Q psy8891 2 CAKFLGDPTKVV-----SGSCDRTLKIWDLRSTETK-FA-GSSCN-DLVTYDGAGTTIISGHFDKK-------------V 60 (203)
Q Consensus 2 ~~~~~~~~~~l~-----t~s~D~~v~lwdl~~~~~~-~~-~~~~~-~~~~~~~~~~~l~s~~~D~~-------------i 60 (203)
+++|||||++|+ +|+.+.+|++||+.+++.. .. ..... ..+.|+|+++.|+.++.|.. |
T Consensus 125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v 204 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI 204 (695)
T ss_dssp EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence 468999999998 6666789999999987643 11 11111 34789999999999998876 9
Q ss_pred EEEECCCceE----EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC----eEEEEECCCCc
Q psy8891 61 RFWDFRAEEK----VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK----KVRFWDFRAEE 129 (203)
Q Consensus 61 ~vwd~~~~~~----~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~i~iWd~~~~~ 129 (203)
++|++.+++. +.....+ ..+..+ .|+|+|++|+..+.++ .|.+||..+++
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~-------------------~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQS-------------------DLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEE-------------------EECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEE-------------------EECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 9999987652 1111111 123333 4566666666666555 66666654443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.17 E-value=1.7e-09 Score=83.21 Aligned_cols=86 Identities=13% Similarity=0.204 Sum_probs=56.3
Q ss_pred ceEEcCCCCEEEEEeCCC-----cEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCC-----------------
Q psy8891 2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFD----------------- 57 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D----------------- 57 (203)
+.+|+|||++|+.++.++ .|.+||+.+++.. ..... ...+.|+|+++.|+.++.+
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 468999999999877643 3777888775532 22222 4456789999988887642
Q ss_pred ----------CeEEEEECCCceEEEeeeeCCeEEEEEecCCC
Q psy8891 58 ----------KKVRFWDFRAEEKVRDIELHGKITSLDLSKGT 89 (203)
Q Consensus 58 ----------~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (203)
..|.+||+.+++.+..+... .+..+.++|++
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg 182 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK 182 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe
Confidence 57899999887763333322 34445555544
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.16 E-value=3.4e-08 Score=73.22 Aligned_cols=194 Identities=11% Similarity=0.009 Sum_probs=117.6
Q ss_pred ceEEcCCCCEEE-EEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-ee
Q psy8891 2 CAKFLGDPTKVV-SGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-EL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~ 76 (203)
++++++++...+ +.+.++.|..||..+...... .......++++++++.+++.. ++.|.+||.......... ..
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~ 106 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDG 106 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCS
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCC
Confidence 467889998777 557889999999866443221 111123367788888666666 899999998765432111 11
Q ss_pred CCeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE
Q psy8891 77 HGKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD 133 (203)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~ 133 (203)
...+..+++.+++...++.... ..-+.++++|+..++...++.|.+||.........
T Consensus 107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 186 (270)
T 1rwi_B 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL 186 (270)
T ss_dssp CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee
Confidence 1346677777765433321111 11256778888777766778999999876553322
Q ss_pred Eecc-ceEEEEEecCCcEEEEeecC---ee---------E------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891 134 IELH-GKITSLDLSKGKYYFVFAEG---FK---------V------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194 (203)
Q Consensus 134 ~~~~-~~v~~~~~~~~~~~~~~~~~---~~---------~------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~ 194 (203)
.... ..+..+.++++..+++.... .. . ......+++.+++..+++...++.|+++++...+
T Consensus 187 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 187 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1111 34677777765444443311 00 0 0123456677889888898999999999988766
Q ss_pred ee
Q psy8891 195 VE 196 (203)
Q Consensus 195 ~~ 196 (203)
.+
T Consensus 267 ~~ 268 (270)
T 1rwi_B 267 HH 268 (270)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.16 E-value=4.4e-08 Score=80.95 Aligned_cols=179 Identities=11% Similarity=0.009 Sum_probs=112.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCC--CCCeEEe--cCcCceEEEEe----CCCCEEEEec-CCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLR--STETKFA--GSSCNDLVTYD----GAGTTIISGH-FDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~--~~~~~~~--~~~~~~~~~~~----~~~~~l~s~~-~D~~i~vwd~~~~~~~~ 72 (203)
.++|+|||+++++++.|+.|.+||+. +.+.... ......-+.++ |++++++.++ .++++.|+|..+.+.++
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 47899999999999999999999995 5443221 11112335677 6999887766 45899999999988877
Q ss_pred eeeeCC------------eEEEEEecCCCceEEEecC-------------------------CceEEEEcCCCCEEEEee
Q psy8891 73 DIELHG------------KITSLDLSKGTETKFAGSS-------------------------CNDLVTYDGAGTTIISGH 115 (203)
Q Consensus 73 ~~~~~~------------~v~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~s~s 115 (203)
.+...+ .+..+..++++...+.... ...-..|+|+|++++++.
T Consensus 281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 281 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe
Confidence 665321 3445555544332221100 001246899999887665
Q ss_pred -CCCeEEEEECCCCceEEEEec-cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCE-EEEec-CCCcEEEEeCC
Q psy8891 116 -FDKKVRFWDFRAEEKVRDIEL-HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY-VAVGS-IDGNIYVWDCN 191 (203)
Q Consensus 116 -~d~~i~iWd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s-~d~~v~~wd~~ 191 (203)
.+++|.++|..+++.+..+.. ... .++++- . ..+.|++.. ++++. .+++|.++|..
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~-----Phpg~g--------------~-~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQT-----PHPGRG--------------A-NFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSS-----BCCTTC--------------E-EEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcC-----CCCccc--------------e-eeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 578999999998876655543 110 011100 0 113466444 44543 46899999988
Q ss_pred C-------ceeeeeec
Q psy8891 192 T-------EQVEAVLK 200 (203)
Q Consensus 192 ~-------~~~~~~~~ 200 (203)
+ .+.+++++
T Consensus 421 ~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 421 PEGHPDNAWKILDSFP 436 (567)
T ss_dssp TTTCTTTBTSEEEEEE
T ss_pred CCCCccccCEEEEEEe
Confidence 7 56677765
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.13 E-value=1.5e-08 Score=78.08 Aligned_cols=175 Identities=10% Similarity=0.116 Sum_probs=111.5
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cC------cCceEEEEeCCCCEEEEec--CCCeEEEEECCCceEE
Q psy8891 3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GS------SCNDLVTYDGAGTTIISGH--FDKKVRFWDFRAEEKV 71 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~------~~~~~~~~~~~~~~l~s~~--~D~~i~vwd~~~~~~~ 71 (203)
++++++++..++...++.|.+||+.+.+.. .. +. .+.. +++ ++..|+.+. .++.|.++|+.+++.+
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 567788854444448999999999886542 11 22 2223 333 344555554 4899999999998877
Q ss_pred EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC----------CeEEEEECCCCceEEEEecc--ce
Q psy8891 72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----------KKVRFWDFRAEEKVRDIELH--GK 139 (203)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----------~~i~iWd~~~~~~~~~~~~~--~~ 139 (203)
..+........ +.++++|++++++..+ +.|.++|..+++..+.+... ..
T Consensus 166 ~~i~~g~~p~~-------------------i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~ 226 (328)
T 3dsm_A 166 DELTIGIQPTS-------------------LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW 226 (328)
T ss_dssp EEEECSSCBCC-------------------CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC
T ss_pred EEEEcCCCccc-------------------eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC
Confidence 66543222122 3456677666665544 78999999988877777653 35
Q ss_pred EEEEEecCC-cEEEEeecCe-------------eE----EeeeEEEEEEc-CCCEEEEe----cCCCcEEEEeCCCceee
Q psy8891 140 ITSLDLSKG-KYYFVFAEGF-------------KV----QCDFTRAVFVV-DDDYVAVG----SIDGNIYVWDCNTEQVE 196 (203)
Q Consensus 140 v~~~~~~~~-~~~~~~~~~~-------------~~----~~~~~~~~~~~-~~~~l~s~----s~d~~v~~wd~~~~~~~ 196 (203)
+..+.++++ ..+++..... .. ......++++| ++..+++. ..++.|.+||.+ |+++
T Consensus 227 p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp CEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred ceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 778888863 4333321110 00 01234466787 45566666 678999999998 9998
Q ss_pred eeec
Q psy8891 197 AVLK 200 (203)
Q Consensus 197 ~~~~ 200 (203)
++++
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 180
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.12 E-value=5.5e-09 Score=82.20 Aligned_cols=143 Identities=11% Similarity=0.092 Sum_probs=95.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-------------eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-------------TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-------------~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~ 68 (203)
.+++++....+++|+.| .+++|++...+ ....... ...+++ +++.|+.+ .++.|++||+++.
T Consensus 42 lLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 42 NLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp CEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 46788999999999987 55669864211 2222233 444666 78899998 8899999999775
Q ss_pred eEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891 69 EKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK 147 (203)
Q Consensus 69 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~ 147 (203)
........ ...+.++.+ ..| .++.++.||+|.+||+.++.... ....+
T Consensus 117 ~~~~~~~~~~~~v~~i~~------------------~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~V------- 165 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKN------------------VNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNV------- 165 (388)
T ss_dssp TCEEEEEECSSCEEEEEE------------------CSS---EEEEEETTSEEEEEETTTCCEEE---EEESE-------
T ss_pred hccCccceeecceeeEEe------------------cCC---CEEEEECCCCEEEEEccCCcccc---ccCCc-------
Confidence 53322221 122332211 112 38888999999999999776532 11223
Q ss_pred CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee--eeee
Q psy8891 148 GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV--EAVL 199 (203)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~--~~~~ 199 (203)
++++.+|+| ++.|..||++++|+...+++ .++|
T Consensus 166 -----------------s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 166 -----------------TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp -----------------EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred -----------------eEEEEcCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence 345555676 67899999999999988886 6666
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.12 E-value=7e-09 Score=81.00 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCEEEEEe------CCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEec----------CCCeEEEEECCCc
Q psy8891 7 GDPTKVVSGS------CDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDFRAE 68 (203)
Q Consensus 7 ~~~~~l~t~s------~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~~~~ 68 (203)
+++++++... .|++|.+||..+.+.... ..... -+.++|++++|+.++ .+++|.+||+.+.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 3666666653 478999999987664321 11111 468899999998886 3678999999988
Q ss_pred eEEEeeee
Q psy8891 69 EKVRDIEL 76 (203)
Q Consensus 69 ~~~~~~~~ 76 (203)
+.+.++..
T Consensus 92 ~~~~~i~~ 99 (361)
T 2oiz_A 92 TFEKEISL 99 (361)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEEc
Confidence 87776653
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.10 E-value=6.1e-08 Score=73.10 Aligned_cols=181 Identities=10% Similarity=-0.049 Sum_probs=104.3
Q ss_pred ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891 2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK 79 (203)
Q Consensus 2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~ 79 (203)
+++|+|+++ .++++..++.|..||..+....+.. ......+.++++++++++...++.|.+||..+++..........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence 478999998 7888999999999999876222222 22234467889999888887889999999977764322211000
Q ss_pred EEEEEecCCCceEEEecCCceEEEEcCCCCEEEE----eeC-------------CCeEEEEECCCCceEEEEeccceEEE
Q psy8891 80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS----GHF-------------DKKVRFWDFRAEEKVRDIELHGKITS 142 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----~s~-------------d~~i~iWd~~~~~~~~~~~~~~~v~~ 142 (203)
. . .....-+.++|+|+++++ ++. .+.|..+|.. ++..........+..
T Consensus 112 ~---~-----------~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 112 K---K-----------LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp E---E-----------CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred C---C-----------CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 0 0 000112456677777766 321 2355555544 333222222233556
Q ss_pred EEecCCcEEEEeecC-eeE-E-------------ee-------eEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 143 LDLSKGKYYFVFAEG-FKV-Q-------------CD-------FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 143 ~~~~~~~~~~~~~~~-~~~-~-------------~~-------~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+.++++...++.... ..+ . .. ...+++.+++.+.++. ++.|++||.+ ++.+..+.
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~ 253 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL 253 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence 666655433332211 000 0 00 1234567788766665 8899999987 77776664
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.10 E-value=2.1e-07 Score=73.04 Aligned_cols=171 Identities=14% Similarity=-0.022 Sum_probs=103.7
Q ss_pred eEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee----
Q psy8891 3 AKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---- 75 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~---- 75 (203)
++|+|||++|+.++. +++|.++| .+.+.... .............+..+++...||.+.++|. +++......
T Consensus 130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 130 NANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred eEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence 579999999998875 57899999 88765433 2222222222223345666778999999998 665442211
Q ss_pred --e----------------------CCeEEEEEecCCCceEEEe--------------cCCceEEEEcCCCCEEEEeeC-
Q psy8891 76 --L----------------------HGKITSLDLSKGTETKFAG--------------SSCNDLVTYDGAGTTIISGHF- 116 (203)
Q Consensus 76 --~----------------------~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~s~s~- 116 (203)
. .+.+..++.......+... ......+.++++++.++.+..
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 0 0112222222111111000 000112457778777777543
Q ss_pred ---------CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEec-CCCcE
Q psy8891 117 ---------DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGS-IDGNI 185 (203)
Q Consensus 117 ---------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~d~~v 185 (203)
+++|.+.|..+++.++.+....... .+.++||++ .++++. .++.|
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~------------------------~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD------------------------AISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEECCCCcC------------------------eEEECCCCCeEEEEEcCCCCeE
Confidence 3578888988888777775544332 344567888 677776 58999
Q ss_pred EEEeCCCceeeeee
Q psy8891 186 YVWDCNTEQVEAVL 199 (203)
Q Consensus 186 ~~wd~~~~~~~~~~ 199 (203)
.++|+.+++.++++
T Consensus 344 ~ViD~~t~~vv~~i 357 (373)
T 2mad_H 344 HIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCCEEeee
Confidence 99999999999884
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.09 E-value=2.6e-07 Score=70.66 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=104.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCC----CeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D----~~i~vwd~~~~~~~~~~ 74 (203)
+++|+++++.++++..++.|.+||..+++... ........++++++++++++...+ +.|.+||...+.....+
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 46889999988889999999999998766432 112223446778898888877666 78999998776543222
Q ss_pred ee---CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC------CCeEEEEECCCCceEEEEeccceEEEEEe
Q psy8891 75 EL---HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF------DKKVRFWDFRAEEKVRDIELHGKITSLDL 145 (203)
Q Consensus 75 ~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~ 145 (203)
.. ...+..+ .++|+|+++++... .+.|..+|..+++..........+..+.+
T Consensus 129 ~~~~~~~~~~~i-------------------~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (333)
T 2dg1_A 129 EDLSTAYCIDDM-------------------VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL 189 (333)
T ss_dssp CSSSSCCCEEEE-------------------EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred ccCccCCcccce-------------------EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence 11 1123333 44556655555443 24555555554433222111123455555
Q ss_pred cCCc-EEEEeec-------------CeeE-------E------eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 146 SKGK-YYFVFAE-------------GFKV-------Q------CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 146 ~~~~-~~~~~~~-------------~~~~-------~------~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
+++. .+++... +... . .....+.+.+++.++++...++.|++||.+ ++.+..
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~ 268 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ 268 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEE
Confidence 5542 2222110 1000 0 012335667788888887788999999984 666665
Q ss_pred ec
Q psy8891 199 LK 200 (203)
Q Consensus 199 ~~ 200 (203)
+.
T Consensus 269 ~~ 270 (333)
T 2dg1_A 269 IL 270 (333)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 185
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.08 E-value=3.2e-08 Score=78.81 Aligned_cols=197 Identities=11% Similarity=0.042 Sum_probs=122.5
Q ss_pred eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe---c-C------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891 3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA---G-S------SCNDLVTYDGAGTTIISGHF--DKKV 60 (203)
Q Consensus 3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~---~-~------~~~~~~~~~~~~~~l~s~~~--D~~i 60 (203)
+.++||+++|+.+. .+++|.++|+.+.+.... . . ....-+.++|++++|+.+.. ++.|
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V 202 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV 202 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence 67899999988876 478999999998664321 1 0 11123578999999988874 5799
Q ss_pred EEEECCCceEEEeeeeCCeE--------EEEEecCCCceEEEecCCceE------------------EEEcCCCCEEEEe
Q psy8891 61 RFWDFRAEEKVRDIELHGKI--------TSLDLSKGTETKFAGSSCNDL------------------VTYDGAGTTIISG 114 (203)
Q Consensus 61 ~vwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~s~ 114 (203)
-+.|+.+.+.+.++...+.+ .-+.+++++..++.....+.+ ..|.+++..++..
T Consensus 203 sVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~ 282 (426)
T 3c75_H 203 GVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP 282 (426)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred EEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence 99999999988777653321 114455666554433322211 2467788877777
Q ss_pred eCCCeEEEEECCCCceE--EEEe-------------ccceEEEEEecCCcEEEEe-------------------ecCe--
Q psy8891 115 HFDKKVRFWDFRAEEKV--RDIE-------------LHGKITSLDLSKGKYYFVF-------------------AEGF-- 158 (203)
Q Consensus 115 s~d~~i~iWd~~~~~~~--~~~~-------------~~~~v~~~~~~~~~~~~~~-------------------~~~~-- 158 (203)
+..++|.+.|...+... ..+. ...+...++-...+.+... ....
T Consensus 283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 88889999998644311 1111 0000112222222211111 0001
Q ss_pred ----eEEeeeEEEEEEcCCC-EEEEec-CCCcEEEEeCCCceeeeee
Q psy8891 159 ----KVQCDFTRAVFVVDDD-YVAVGS-IDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 159 ----~~~~~~~~~~~~~~~~-~l~s~s-~d~~v~~wd~~~~~~~~~~ 199 (203)
........+.++||++ +++++. .++.|.++|+.+++.++++
T Consensus 363 v~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 1112244567889998 888877 5999999999999999987
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.05 E-value=1e-07 Score=80.72 Aligned_cols=107 Identities=8% Similarity=0.117 Sum_probs=70.7
Q ss_pred ceEEcCCCCEEEEEeCCC-----cEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCe---------------
Q psy8891 2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKK--------------- 59 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~--------------- 59 (203)
.++|||||++|+.++.++ +|++||+.+++.... .......+.|+||++.|+.++.|+.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 468999999998766544 899999998764321 1111234789999999999888776
Q ss_pred -EEEEECCCceEE--Eeeee---CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-----CCeEEEEECCC
Q psy8891 60 -VRFWDFRAEEKV--RDIEL---HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-----DKKVRFWDFRA 127 (203)
Q Consensus 60 -i~vwd~~~~~~~--~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----d~~i~iWd~~~ 127 (203)
|++|++.+++.. ..... ...+.. ..|+|+|++|+..+. +..|.+||+.+
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~-------------------~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGG-------------------AELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEE-------------------EEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEE-------------------EEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 999999876521 11111 111223 345667766666554 56888888875
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.03 E-value=1.1e-07 Score=73.01 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=97.2
Q ss_pred CCCEEEEE---------eCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC---C--eEEEEECCCceEEEe
Q psy8891 8 DPTKVVSG---------SCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD---K--KVRFWDFRAEEKVRD 73 (203)
Q Consensus 8 ~~~~l~t~---------s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~--~i~vwd~~~~~~~~~ 73 (203)
||++++.. +.++.|.+||+.+++.... .......|+|+++.|+..+.+ + .|.+||+..++....
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l 100 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI 100 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE
Confidence 88887654 2367899999988664322 223446899999999887754 3 478888887765443
Q ss_pred eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC---------------------------CCeEEEEECC
Q psy8891 74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF---------------------------DKKVRFWDFR 126 (203)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------------------d~~i~iWd~~ 126 (203)
...+. +..+.++| +|+.|+.++. ...|.+||+.
T Consensus 101 ~~~~~-~~~~~wsp-------------------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 101 LEAKN-IRSLEWNE-------------------DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEESE-EEEEEECT-------------------TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EcCCC-ccceeECC-------------------CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 33333 55555555 4444444432 3578999998
Q ss_pred CCceEEEEeccceEEEEEecCCcEEEEee-c---------CeeE-----------EeeeEEEEEEcCCCEEEEecCC---
Q psy8891 127 AEEKVRDIELHGKITSLDLSKGKYYFVFA-E---------GFKV-----------QCDFTRAVFVVDDDYVAVGSID--- 182 (203)
Q Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~---------~~~~-----------~~~~~~~~~~~~~~~l~s~s~d--- 182 (203)
+++.++.+... .+..+.++++. ++... . ...+ .........+|++++|+.++.+
T Consensus 161 ~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 161 SEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKK 238 (347)
T ss_dssp TTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEEESEEEEEECSSCEEEEECCSSS
T ss_pred CCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccCcceeeECCCCCEEEEEEccccC
Confidence 88763444332 44455555555 22221 0 0000 0001111237899988777654
Q ss_pred -----CcEEEEeCCCceeeeeec
Q psy8891 183 -----GNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 183 -----~~v~~wd~~~~~~~~~~~ 200 (203)
..|.+|| +++....+.
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESST
T ss_pred CccccceEEEEC--CCceEeccc
Confidence 3688888 566554443
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.00 E-value=3.9e-08 Score=75.69 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=95.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC------e
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG------K 79 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~------~ 79 (203)
+++..++...+++|.+||..+.+... ........+++++++...++...++.|.+||+.+++....+.... .
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 34455566668999999999876532 222222335566677544454489999999999988766654322 1
Q ss_pred EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee--CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891 80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH--FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG 157 (203)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (203)
...+ .+ ++..|+.+. .+++|.++|+.+++..+.+......
T Consensus 133 p~~i-------------------~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p----------------- 174 (328)
T 3dsm_A 133 TEQM-------------------VQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP----------------- 174 (328)
T ss_dssp CCCE-------------------EE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB-----------------
T ss_pred cceE-------------------EE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc-----------------
Confidence 1111 12 233455555 4889999999998876665432211
Q ss_pred eeEEeeeEEEEEEcCCCEEEEecCC----------CcEEEEeCCCceeeeeec
Q psy8891 158 FKVQCDFTRAVFVVDDDYVAVGSID----------GNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~s~s~d----------~~v~~wd~~~~~~~~~~~ 200 (203)
..+.+.+++++++++..+ +.|.++|..++++++++.
T Consensus 175 -------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 175 -------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp -------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred -------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 123455677777666554 789999999999887764
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.96 E-value=6.8e-08 Score=73.91 Aligned_cols=172 Identities=9% Similarity=0.002 Sum_probs=104.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCCeE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKI 80 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~~v 80 (203)
+++|++++..++..+.+++++.|.-...............+++++++++++++..++.|.+||..+++...... ....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred eeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 57788888888888889999999321111111122223446788999888888899999999998776543321 12334
Q ss_pred EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC----CeEEEEECCCCceEEEEe---ccceEEEEEecCCcEEEE
Q psy8891 81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDIE---LHGKITSLDLSKGKYYFV 153 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----~~i~iWd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~ 153 (203)
..++ ++++|+++++...+ +.|.+||..++.....+. ....+..+.++++..+++
T Consensus 90 ~~i~-------------------~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 90 AAIK-------------------IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp EEEE-------------------ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred ceEE-------------------ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Confidence 4443 45566666665555 689999987765432222 113466666665544333
Q ss_pred eecC-------e----------eEE------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891 154 FAEG-------F----------KVQ------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT 192 (203)
Q Consensus 154 ~~~~-------~----------~~~------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~ 192 (203)
.... . ... .....+.++|++++| ++.+.++.|++||.++
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 2210 0 000 012345678888855 5556789999999863
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.96 E-value=3.3e-07 Score=77.52 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=49.4
Q ss_pred ceEEcCCCCEEEEEeCCCc----------------EEEEeCCCCC----eEEecCc-C--ceEEEEeCCCCEEEEecC--
Q psy8891 2 CAKFLGDPTKVVSGSCDRT----------------LKIWDLRSTE----TKFAGSS-C--NDLVTYDGAGTTIISGHF-- 56 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~----------------v~lwdl~~~~----~~~~~~~-~--~~~~~~~~~~~~l~s~~~-- 56 (203)
+++|+|||+.|+.++.|+. |++|++.+++ ..+.... . ...+.++|+++.|+..+.
T Consensus 175 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 254 (710)
T 2xdw_A 175 CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG 254 (710)
T ss_dssp CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc
Confidence 4789999999999998877 9999998754 2222211 1 234678999998877654
Q ss_pred ---CCeEEEEECCC
Q psy8891 57 ---DKKVRFWDFRA 67 (203)
Q Consensus 57 ---D~~i~vwd~~~ 67 (203)
+..|.+||+.+
T Consensus 255 ~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 255 CDPVNRLWYCDLQQ 268 (710)
T ss_dssp SSSCCEEEEEEGGG
T ss_pred CCCccEEEEEECcc
Confidence 67899999976
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.94 E-value=6.2e-08 Score=82.43 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=69.4
Q ss_pred ceEEcCCCCEEEEEeCC-----CcEEEEeCCCCCeEEec-CcC-ceEEEEeCCCCEEEEecCCCe--------------E
Q psy8891 2 CAKFLGDPTKVVSGSCD-----RTLKIWDLRSTETKFAG-SSC-NDLVTYDGAGTTIISGHFDKK--------------V 60 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D-----~~v~lwdl~~~~~~~~~-~~~-~~~~~~~~~~~~l~s~~~D~~--------------i 60 (203)
..+|||||++|+.++.+ .+|++||+.+++..... ... ...+.|+|+ +.|+.++.|+. |
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 46899999998876654 46999999987753221 111 123578999 88888877654 8
Q ss_pred EEEECCCceEEE--eeeeCC---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC-----eEEEEECCCC
Q psy8891 61 RFWDFRAEEKVR--DIELHG---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK-----KVRFWDFRAE 128 (203)
Q Consensus 61 ~vwd~~~~~~~~--~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~i~iWd~~~~ 128 (203)
++|++.+++... ...... .+. -..|+|||++|+..+.++ .|.+||+.++
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~-------------------~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGH-------------------GASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEE-------------------EEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEEECCCCchhCEEEeccCCCCeEEE-------------------EEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 899987654211 111110 122 235677888777776543 8999998765
No 192
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.93 E-value=6.9e-09 Score=81.32 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=40.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
++..+++++.|+.|+.||..+++.. ........ .....++..+++++.|+.|+.||..+++.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s-~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQ-VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCC-CC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCcee-cceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 6788999999999999999987753 22211111 112245668888899999999999888765443
No 193
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.93 E-value=9.5e-08 Score=74.77 Aligned_cols=65 Identities=6% Similarity=-0.087 Sum_probs=47.9
Q ss_pred eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe--cC--------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891 3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA--GS--------SCNDLVTYDGAGTTIISGHF--DKKV 60 (203)
Q Consensus 3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~--~~--------~~~~~~~~~~~~~~l~s~~~--D~~i 60 (203)
+.|+||+++++.+. .+++|.+||+.+.+.... .. .....+.++|++++|+.+.. +..+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 67899999998886 478999999998764321 11 11123678999998888865 4678
Q ss_pred EE--EECCC
Q psy8891 61 RF--WDFRA 67 (203)
Q Consensus 61 ~v--wd~~~ 67 (203)
.+ +|+.+
T Consensus 150 ~V~~iD~~t 158 (368)
T 1mda_H 150 GLSVPGASD 158 (368)
T ss_dssp EEEETTTEE
T ss_pred EEEEEchhh
Confidence 88 99866
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.92 E-value=1.1e-06 Score=66.10 Aligned_cols=175 Identities=13% Similarity=0.046 Sum_probs=94.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-c----C--cCceEEEEeCCCCEEEE----ecC-------------C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-G----S--SCNDLVTYDGAGTTIIS----GHF-------------D 57 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~----~--~~~~~~~~~~~~~~l~s----~~~-------------D 57 (203)
+++++++|..+++.+.++.|.+||..+++.... . . ....-+++++++++++| |.. .
T Consensus 73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 478899999888887789999999976553211 1 0 01123667899988887 331 2
Q ss_pred CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCce---EEE
Q psy8891 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEK---VRD 133 (203)
Q Consensus 58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~---~~~ 133 (203)
+.|..+|.. ++............. ++|+|+|+.+++.+.++.|.+||+. +++. ...
T Consensus 153 ~~l~~~~~~-g~~~~~~~~~~~~~g-------------------i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 153 RWVFRLAPD-GTLSAPIRDRVKPNG-------------------LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp CEEEEECTT-SCEEEEECCCSSEEE-------------------EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred cEEEEECCC-CCEEEeecCCCCCcc-------------------EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence 344444433 322111111111222 4566677777666667788888876 4443 122
Q ss_pred Eec-cceEEEEEecCCcEEEEeecC---------eeE-----EeeeEEEEEE-cCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891 134 IEL-HGKITSLDLSKGKYYFVFAEG---------FKV-----QCDFTRAVFV-VDDDYVAVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 134 ~~~-~~~v~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~-~~~~~l~s~s~d~~v~~wd~~~~~~~~ 197 (203)
+.. ...+..+.++++..+++...+ ... ......++|. ++++.|+.++.+ .+.-++.+++++.+
T Consensus 213 ~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp ECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred eeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence 211 112334455544333332211 000 0013456674 778888888776 45556776655544
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.87 E-value=1.3e-06 Score=68.54 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=44.7
Q ss_pred ceEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891 2 CAKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~ 67 (203)
.++|+|||++|+.+.. +++|.++|+.+.+.............++.....+++.+.||.+-+.++..
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence 3689999999988874 68999999998764322111111122333445677777888888888876
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.87 E-value=1.8e-07 Score=78.98 Aligned_cols=173 Identities=10% Similarity=0.007 Sum_probs=94.9
Q ss_pred ceEEcCCCCEEEEEeCCCc-------------EEEEeCCCCC----eEEecC---cCceEEEEeCCCCEEEEecCCC---
Q psy8891 2 CAKFLGDPTKVVSGSCDRT-------------LKIWDLRSTE----TKFAGS---SCNDLVTYDGAGTTIISGHFDK--- 58 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~-------------v~lwdl~~~~----~~~~~~---~~~~~~~~~~~~~~l~s~~~D~--- 58 (203)
.++|+|||+.|+.++.|.. |++|++.++. ..+... .....+.++|+++.|+..+.++
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE 251 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence 5789999999999999887 9999998754 222221 1223467899999888777665
Q ss_pred -eEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee---CCCeEEEEECCCCce--E
Q psy8891 59 -KVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH---FDKKVRFWDFRAEEK--V 131 (203)
Q Consensus 59 -~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~i~iWd~~~~~~--~ 131 (203)
.|.+||...++. ..+..+ ..+... .+ ++|..++... .+++|.+||+.+++. .
T Consensus 252 ~~l~~~~~~~~~~-~~l~~~~~~~~~~-------------------~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 252 NDVYWKRPGEKDF-RLLVKGVGAKYEV-------------------HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EEEEEECTTCSSC-EEEEECSSCCEEE-------------------EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred eEEEEEcCCCCce-EEeecCCCceEEE-------------------Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 677776544432 222211 111111 12 2333333332 246788888766542 1
Q ss_pred EEEecc---ceEEEEEecCCcEEEEeecC------------eeEE-------eeeEEEEEEcCCCEEE----EecCCCcE
Q psy8891 132 RDIELH---GKITSLDLSKGKYYFVFAEG------------FKVQ-------CDFTRAVFVVDDDYVA----VGSIDGNI 185 (203)
Q Consensus 132 ~~~~~~---~~v~~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~l~----s~s~d~~v 185 (203)
..+..+ ..+..+.+..+..++..... .... ..+....++++++.++ +....++|
T Consensus 311 ~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp EEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred eEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 222221 23555555555544432211 0000 0011122446676655 33446789
Q ss_pred EEEeCCCcee
Q psy8891 186 YVWDCNTEQV 195 (203)
Q Consensus 186 ~~wd~~~~~~ 195 (203)
++||+.+++.
T Consensus 391 ~~~d~~~g~~ 400 (695)
T 2bkl_A 391 YKTSVSTGKS 400 (695)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 9999988774
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.86 E-value=4.7e-06 Score=65.29 Aligned_cols=73 Identities=5% Similarity=-0.052 Sum_probs=53.4
Q ss_pred eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe--cC--------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891 3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA--GS--------SCNDLVTYDGAGTTIISGHF--DKKV 60 (203)
Q Consensus 3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~--~~--------~~~~~~~~~~~~~~l~s~~~--D~~i 60 (203)
++|+||+++|+.+. .+++|.+||+.+.+.... .. ....-+.++|++++|+.+.. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 67999999998886 378899999987543211 11 11123678999999998874 5789
Q ss_pred EEEECCCceEEEe-eee
Q psy8891 61 RFWDFRAEEKVRD-IEL 76 (203)
Q Consensus 61 ~vwd~~~~~~~~~-~~~ 76 (203)
-++| .+++.+.+ +..
T Consensus 151 ~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 151 GLVV-QGGSSDDQLLSS 166 (373)
T ss_pred EEEE-CCCCEEeEEcCC
Confidence 9999 98887766 544
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.84 E-value=1.2e-05 Score=60.73 Aligned_cols=179 Identities=8% Similarity=0.030 Sum_probs=104.2
Q ss_pred ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee---
Q psy8891 2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--- 76 (203)
Q Consensus 2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--- 76 (203)
+..|++++ ..+++...++.|..||..+.+.. .........+++.++++++++. ++.|.+||..+++.......
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCC
Confidence 35688855 45667778899999999876543 2222333456788999866654 67899999987764322221
Q ss_pred --CCeEEEEEecCCCceEEEec-----------CCc---------------------eEEEEcCCCCEEEE-eeCCCeEE
Q psy8891 77 --HGKITSLDLSKGTETKFAGS-----------SCN---------------------DLVTYDGAGTTIIS-GHFDKKVR 121 (203)
Q Consensus 77 --~~~v~~~~~~~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~l~s-~s~d~~i~ 121 (203)
...+..+.+.+++...+... ... .-++|+|+++.|+. .+.++.|.
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~ 174 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVD 174 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEE
Confidence 12356666666655332211 000 11457777776543 44567788
Q ss_pred EEEC--CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 122 FWDF--RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 122 iWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
+||+ .++.....-. .. .+.. . ......+++.+++.+.++...++.|..||.++|+++.++
T Consensus 175 ~~~~d~~~G~~~~~~~----~~--~~~~---------~---~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 175 AFDYDLQTGQISNRRS----VY--KLEK---------E---EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EEEECTTTCCEEEEEE----EE--ECCG---------G---GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred EEeccCCCCcccCcEE----EE--ECCC---------C---CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 8876 3443211000 00 0000 0 001123445677877777777788999999989988877
Q ss_pred c
Q psy8891 200 K 200 (203)
Q Consensus 200 ~ 200 (203)
+
T Consensus 237 ~ 237 (297)
T 3g4e_A 237 K 237 (297)
T ss_dssp E
T ss_pred E
Confidence 5
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.84 E-value=4.9e-07 Score=67.95 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=89.1
Q ss_pred CCEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 125 (203)
Q Consensus 48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~ 125 (203)
++.|++++.|+.|.+||..+++.++++..+. .+..+ .+.|+|++++ +.++.|..||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~-------------------~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV-------------------AATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE-------------------EECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe-------------------EECCCCCEEE--eCCCCEEEECC
Confidence 5799999999999999999999888776543 23333 3556777777 45778999998
Q ss_pred CCCceEEEEecc--ceEEEEEecCCcEEEEeecC--eeE-----------Eee-----------eEEEEEEcCCCEEEEe
Q psy8891 126 RAEEKVRDIELH--GKITSLDLSKGKYYFVFAEG--FKV-----------QCD-----------FTRAVFVVDDDYVAVG 179 (203)
Q Consensus 126 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--~~~-----------~~~-----------~~~~~~~~~~~~l~s~ 179 (203)
+++.+..+... ..+.+....++..+++...+ ..+ ... ...+...++++++++.
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 78888777764 34555555554433333221 110 000 0112356789999999
Q ss_pred cCCCcEEEEeCCCceeeeeec
Q psy8891 180 SIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 180 s~d~~v~~wd~~~~~~~~~~~ 200 (203)
..++.|+.||.+ |+.+.++.
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~ 162 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVK 162 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEE
T ss_pred cCCCEEEEECCC-CCEEEEEE
Confidence 999999999998 99888775
No 200
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.81 E-value=2.6e-06 Score=65.35 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=103.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE-Eec--------C--cCceEEEEeC-CCCEEEEec-CCCeEEEEECC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK-FAG--------S--SCNDLVTYDG-AGTTIISGH-FDKKVRFWDFR 66 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~-~~~--------~--~~~~~~~~~~-~~~~l~s~~-~D~~i~vwd~~ 66 (203)
.++++++|..+++.+.++.|++||..... .. ... . ....-+++++ +++.+++.+ .++.|++|| .
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 46889999999999999999999987542 22 110 0 0123467888 788888876 699999999 5
Q ss_pred CceEEEeeeeC-----------CeEEEEEecCC-CceEEEecCCceEEEEcCC-CCEEEEe-------------------
Q psy8891 67 AEEKVRDIELH-----------GKITSLDLSKG-TETKFAGSSCNDLVTYDGA-GTTIISG------------------- 114 (203)
Q Consensus 67 ~~~~~~~~~~~-----------~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~s~------------------- 114 (203)
+++.+..+... .....+++.++ +...++......+..|+++ |+.+.+.
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence 56655555321 12788899987 5544555556666677765 4433221
Q ss_pred -----------eCCCeEEEEECCCCceEEEEec----cceEEEEEecCCcEEEEeec
Q psy8891 115 -----------HFDKKVRFWDFRAEEKVRDIEL----HGKITSLDLSKGKYYFVFAE 156 (203)
Q Consensus 115 -----------s~d~~i~iWd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~ 156 (203)
..+.+|++||..+++.+..+.. -..+..+.++++..+++...
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 2234899999999988877631 23478888888876666543
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.80 E-value=1.5e-06 Score=69.00 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=105.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCC--eEEEEECCCceEEEee---
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDI--- 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~--- 74 (203)
.++|++++..+++...++.|+.||+.+.... ........ ++++++++.|+.++.++ .|.++|...+.....+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec
Confidence 4678899998888888899999999875542 22222223 77889999999888876 7888887654432222
Q ss_pred -e-eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---c--cceE--E-EEE
Q psy8891 75 -E-LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---L--HGKI--T-SLD 144 (203)
Q Consensus 75 -~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~---~--~~~v--~-~~~ 144 (203)
. ....+.. +.++|++..|+.+..+++|+.||..++... .+. . .... . .+.
T Consensus 214 ~~~~~~~p~~-------------------iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 214 GSTFSGKIGA-------------------VALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp CTTSCSCCCB-------------------CEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEE
T ss_pred cchhcCCcEE-------------------EEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEE
Confidence 0 0011122 345664345555667788999998766432 220 1 1111 1 566
Q ss_pred ecC-CcEEEEeecCe-eE-----------E-------------------eeeEEEEEEcCCCEEEEec-CCCcEEEEeCC
Q psy8891 145 LSK-GKYYFVFAEGF-KV-----------Q-------------------CDFTRAVFVVDDDYVAVGS-IDGNIYVWDCN 191 (203)
Q Consensus 145 ~~~-~~~~~~~~~~~-~~-----------~-------------------~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~ 191 (203)
+++ +..+++..... .+ . .....+++.+++.++++-+ .++.|+.||+.
T Consensus 274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 274 YYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 665 34444332110 00 0 0133467788999888888 89999999987
Q ss_pred Cceee
Q psy8891 192 TEQVE 196 (203)
Q Consensus 192 ~~~~~ 196 (203)
+|++.
T Consensus 354 ~G~v~ 358 (409)
T 3hrp_A 354 DGYVS 358 (409)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 77754
No 202
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.80 E-value=3.1e-08 Score=84.26 Aligned_cols=116 Identities=7% Similarity=-0.010 Sum_probs=79.3
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--
Q psy8891 41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-- 117 (203)
Q Consensus 41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-- 117 (203)
.+.|.|++++++++ |++|++||+.+++....+..+.. ... ....-..|+|||+.|+.++.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG--------------HSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC--------------SCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc--------------ccccceEECCCCCEEEEEECCee
Confidence 36789999888886 99999999999887555443320 000 000114678899999988876
Q ss_pred -------CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 118 -------KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 118 -------~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
+.+.+||+.+++...-..... ......++|||+.|+.+ .|++|++||+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~~l~~~~~------------------------~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLITEERIPN------------------------NTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEECCSSCCCT------------------------TEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred eEEEccceEEEEEECCCCcEEEcccCCC------------------------cceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 455699999876432111011 12345678999999887 5789999999
Q ss_pred CCceeee
Q psy8891 191 NTEQVEA 197 (203)
Q Consensus 191 ~~~~~~~ 197 (203)
.+++..+
T Consensus 140 ~~~~~~~ 146 (740)
T 4a5s_A 140 PNLPSYR 146 (740)
T ss_dssp TTSCCEE
T ss_pred CCCceEE
Confidence 9887665
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.79 E-value=8.5e-06 Score=61.42 Aligned_cols=177 Identities=8% Similarity=-0.007 Sum_probs=98.2
Q ss_pred ceEEcCCCCEEEE-------EeCCCcEEEEeCCCCCeEE-ec-----C-cCceEEEEeCC-CCEEEEecCCCeEEEEECC
Q psy8891 2 CAKFLGDPTKVVS-------GSCDRTLKIWDLRSTETKF-AG-----S-SCNDLVTYDGA-GTTIISGHFDKKVRFWDFR 66 (203)
Q Consensus 2 ~~~~~~~~~~l~t-------~s~D~~v~lwdl~~~~~~~-~~-----~-~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~ 66 (203)
+++|++++..+++ +..++.|..||..+++... .. . .....+.++++ ++++++. ..+.|.+||..
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~ 100 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD 100 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC
Confidence 4678899988888 6788999999987765422 11 1 11233567777 5544444 44579999987
Q ss_pred CceEEEe-eeeC-----CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC---------------CeEEEEEC
Q psy8891 67 AEEKVRD-IELH-----GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD---------------KKVRFWDF 125 (203)
Q Consensus 67 ~~~~~~~-~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---------------~~i~iWd~ 125 (203)
++.... .... ..+.. +.++++|++.++...+ +.|..||.
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~-------------------i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCND-------------------CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCE-------------------EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred -CCEEEEEeccCCCccccCCcC-------------------EEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 554322 1110 11223 3455566655555443 45666665
Q ss_pred CCCceEEEEeccceEEEEEec----CCc-EEEEeec-------------Cee----EE--------eeeEEEEEEcCCCE
Q psy8891 126 RAEEKVRDIELHGKITSLDLS----KGK-YYFVFAE-------------GFK----VQ--------CDFTRAVFVVDDDY 175 (203)
Q Consensus 126 ~~~~~~~~~~~~~~v~~~~~~----~~~-~~~~~~~-------------~~~----~~--------~~~~~~~~~~~~~~ 175 (203)
. ++.............+.++ ++. .+++... +.. .. .....+++.+++.+
T Consensus 161 ~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 161 D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 4 4432222111223444444 433 2222111 100 00 11233556778888
Q ss_pred EEEecCCCcEEEEeCCCceeeeeec
Q psy8891 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 176 l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
+++...++.|.+||.++++.+..+.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEE
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 8887788999999998787766654
No 204
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.78 E-value=1.5e-06 Score=64.98 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=88.3
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~ 77 (203)
++++.+++..+++.+.++.|++||....... ... ......++++++++.+++...++.|++||.. ++.+..+..+
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~ 203 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE 203 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccC
Confidence 4678999998888888999999997643322 211 1122446788888888888889999999974 3444444322
Q ss_pred C---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC-eEEEEECCCCceEEEEeccc---eEEEEEecCCcE
Q psy8891 78 G---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK-KVRFWDFRAEEKVRDIELHG---KITSLDLSKGKY 150 (203)
Q Consensus 78 ~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-~i~iWd~~~~~~~~~~~~~~---~v~~~~~~~~~~ 150 (203)
+ .+. -++++++|+++++...++ .|++||. +++.+..+..+. .+..+.++++..
T Consensus 204 g~~~~p~-------------------~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 204 GITNYPI-------------------GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp TTSCSEE-------------------EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred CccCCCc-------------------EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCc
Confidence 1 122 245677787788777776 9999995 466666665432 266777777665
Q ss_pred EEEe
Q psy8891 151 YFVF 154 (203)
Q Consensus 151 ~~~~ 154 (203)
+++.
T Consensus 264 l~vs 267 (286)
T 1q7f_A 264 VVLA 267 (286)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.76 E-value=5.2e-07 Score=71.00 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=79.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
.++| |+..|+.+ .++.|++||+.+.... ...... +..+.+....++.+..||.+.+||+..+.... ...
T Consensus 92 ~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~--v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~ 163 (388)
T 1xip_A 92 FVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKP--VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQ 163 (388)
T ss_dssp EEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSC--EEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEE
T ss_pred EEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecc--eeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccC
Confidence 4677 88999998 8899999999764321 111111 11212222348999999999999998776542 112
Q ss_pred eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEe----------ccceEEEEEec
Q psy8891 79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIE----------LHGKITSLDLS 146 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~----------~~~~v~~~~~~ 146 (203)
.|.+ ++|+|.| ++.+..|+++++|+...++. .+++. ...++.++.+.
T Consensus 164 ~Vs~-------------------v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl 222 (388)
T 1xip_A 164 NVTS-------------------FDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL 222 (388)
T ss_dssp SEEE-------------------EEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred CceE-------------------EEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe
Confidence 3444 4566677 56788899999998887665 44551 13457777766
Q ss_pred CCcEEE
Q psy8891 147 KGKYYF 152 (203)
Q Consensus 147 ~~~~~~ 152 (203)
++..++
T Consensus 223 ~~~~fl 228 (388)
T 1xip_A 223 SPQDFL 228 (388)
T ss_dssp SSSEEE
T ss_pred cCCeEE
Confidence 554443
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.75 E-value=8.1e-07 Score=69.76 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=85.4
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEec----------CCCeEEEEEC
Q psy8891 4 KFLGDPTKVVSGSC-----DRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDF 65 (203)
Q Consensus 4 ~~~~~~~~l~t~s~-----D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~ 65 (203)
...|++.+++.... +++|.+.|..+.+.. ..+..+ . +.++|+++.|+.++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34689999888766 689999999886643 223333 3 78899999887765 4678999999
Q ss_pred CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccc
Q psy8891 66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHG 138 (203)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~ 138 (203)
.+.+.+.++..... .....+ .....+.++|||++++.+.. +++|.++|+.+++.+.++...+
T Consensus 117 ~t~~v~~~I~v~~g----------~r~~~g-~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 117 VTLLPTADIELPDA----------PRFLVG-TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp TTCCEEEEEEETTC----------CCCCBS-CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred CCCeEEEEEECCCc----------cccccC-CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 99888777643210 000000 01112567889998888864 6899999999999888886654
No 207
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.7e-06 Score=73.06 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=106.4
Q ss_pred eEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCCeE--EecCc----------CceEEEEeCCC---
Q psy8891 3 AKFLGDPTKVVSGSCDR-------------------TLKIWDLRSTETK--FAGSS----------CNDLVTYDGAG--- 48 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~-------------------~v~lwdl~~~~~~--~~~~~----------~~~~~~~~~~~--- 48 (203)
.++.+++..++.++.++ +|..+|.++++.. +.... ...++....++
T Consensus 248 ~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~ 327 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR 327 (677)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE
T ss_pred eeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe
Confidence 46778888888887664 5999999987753 21111 11122223356
Q ss_pred CEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEE------------E-----ecCCceEEEEcCCCC
Q psy8891 49 TTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKF------------A-----GSSCNDLVTYDGAGT 109 (203)
Q Consensus 49 ~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~ 109 (203)
..|+.++.+|.+.++|.++++.+....... ....++ ..+..+. . |...-....|+|+..
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 589999999999999999999877654321 111111 1111000 0 001111245677766
Q ss_pred EEEEeeC-------------------------------------------CCeEEEEECCCCceEEEEeccceEEEEEec
Q psy8891 110 TIISGHF-------------------------------------------DKKVRFWDFRAEEKVRDIELHGKITSLDLS 146 (203)
Q Consensus 110 ~l~s~s~-------------------------------------------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~ 146 (203)
.++.... .+.|..||+.+++.+..+.......
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~----- 480 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN----- 480 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-----
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc-----
Confidence 6666432 2678888888877666554322110
Q ss_pred CCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 147 KGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
...+..++..++.++.|+.+++||.++|+++..++
T Consensus 481 -------------------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 481 -------------------GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp -------------------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -------------------CcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 11233467788889999999999999999998876
No 208
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.71 E-value=3.4e-06 Score=71.35 Aligned_cols=175 Identities=10% Similarity=0.124 Sum_probs=105.3
Q ss_pred ceEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCCeE--EecC-c-------CceEE--EEeCCCC-
Q psy8891 2 CAKFLGDPTKVVSGSCDRT-------------------LKIWDLRSTETK--FAGS-S-------CNDLV--TYDGAGT- 49 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~-------------------v~lwdl~~~~~~--~~~~-~-------~~~~~--~~~~~~~- 49 (203)
.+.+.|+..+++.++.+++ |..+|.++++.+ +... . ....+ ....+++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 3567888889999888764 999999988753 2111 0 01111 1222443
Q ss_pred --EEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEec--------------CCCceEEE-----ecCCceEEEEcC
Q psy8891 50 --TIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLS--------------KGTETKFA-----GSSCNDLVTYDG 106 (203)
Q Consensus 50 --~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~--------------~~~~~~~~-----~~~~~~~~~~~~ 106 (203)
.|+.++.+|.++++|.++++.+....... ....++.. ++....+. |...-.-..|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 78999999999999999999875443321 11111100 11111110 001111245666
Q ss_pred CCCEEEEeeC---------------------------------------------CCeEEEEECCCCceEEEEeccceEE
Q psy8891 107 AGTTIISGHF---------------------------------------------DKKVRFWDFRAEEKVRDIELHGKIT 141 (203)
Q Consensus 107 ~~~~l~s~s~---------------------------------------------d~~i~iWd~~~~~~~~~~~~~~~v~ 141 (203)
+..+++.... +++|+.||+.+++....+..+...
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~- 477 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF- 477 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-
Confidence 6666665422 467778888777766555443211
Q ss_pred EEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 142 SLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
....+...+..++.|+.|+.++.||.++|+++-.++
T Consensus 478 -----------------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 478 -----------------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp -----------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----------------------cCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 011233467788999999999999999999998775
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.62 E-value=2.5e-08 Score=78.10 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=66.0
Q ss_pred CCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891 47 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 47 ~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~ 126 (203)
++..|++++.|+.|+.||..+++.++.+.. +.+.+.. +..++..+++++.|+.|+.||..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p-------------------~~~~g~~~v~~s~dg~l~a~d~~ 67 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP-------------------THVEEPAFLPDPNDGSLYTLGSK 67 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------------------------CCEEECTTTCCEEEC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecc-------------------eEcCCCEEEEeCCCCEEEEEECC
Confidence 467999999999999999999998877654 2221110 11244566777788888888888
Q ss_pred CCceEEEEeccce--EEE-EEe-cCC--------cEEEEe--ecCeeE-Eeee-EEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891 127 AEEKVRDIELHGK--ITS-LDL-SKG--------KYYFVF--AEGFKV-QCDF-TRAVFVVDDDYVAVGSIDGNIYVWDC 190 (203)
Q Consensus 127 ~~~~~~~~~~~~~--v~~-~~~-~~~--------~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~l~s~s~d~~v~~wd~ 190 (203)
+++.+..++.+.. +.+ ..+ ..+ ..+... ..+... .... ....++|+++.+++++.|+.|+.||.
T Consensus 68 tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 68 NNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp --CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCS
T ss_pred CCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEEC
Confidence 7776554432210 000 000 000 001110 001000 0000 01234567788999999999999999
Q ss_pred CCceeeeee
Q psy8891 191 NTEQVEAVL 199 (203)
Q Consensus 191 ~~~~~~~~~ 199 (203)
++|+++-.+
T Consensus 148 ~tG~~~W~~ 156 (369)
T 2hz6_A 148 KTRELRWNA 156 (369)
T ss_dssp SSSSCCCEE
T ss_pred CCCCEEEeE
Confidence 999887654
No 210
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=1.3e-05 Score=59.45 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=94.7
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEeCCCCCeEEec--CcCceEEEEeCCCCEEEEec-CCCeEEEEECCCceEEEeeeeCC
Q psy8891 4 KFLGDPTKVVSGSCDR--TLKIWDLRSTETKFAG--SSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIELHG 78 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~--~v~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~~~~~~~~~~ 78 (203)
.|+ ++....+.+.+| .|+.+|+++++..... ....-.....++++.|+... .++.+.+||..+.+.+.++...+
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~ 127 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG 127 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence 456 666667777766 8999999998754321 11111111223345555554 58899999999999888876532
Q ss_pred eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCe
Q psy8891 79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF 158 (203)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (203)
.-.. +.+++..|+....+.+|.++|..+.+.+..++.... ++.
T Consensus 128 eG~g---------------------lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~--------g~~-------- 170 (262)
T 3nol_A 128 EGWG---------------------LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH--------GEE-------- 170 (262)
T ss_dssp CCCC---------------------EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET--------TEE--------
T ss_pred CceE---------------------EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC--------Ccc--------
Confidence 1111 122445566665678999999998887776654210 000
Q ss_pred eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
......+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus 171 --~~~lNELe~-~~G~lyan~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 171 --LPELNELEW-VDGEIFANVWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp --CCCEEEEEE-ETTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred --ccccceeEE-ECCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence 000011112 255555555568899999999999998875
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.59 E-value=2.7e-06 Score=71.94 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=67.0
Q ss_pred ceEEcCCCCEEE-----EEeCCCcEEEEeCCCCCeEEe-cCcC-ceEEEEeCCCCEEEEecCCCe-------------EE
Q psy8891 2 CAKFLGDPTKVV-----SGSCDRTLKIWDLRSTETKFA-GSSC-NDLVTYDGAGTTIISGHFDKK-------------VR 61 (203)
Q Consensus 2 ~~~~~~~~~~l~-----t~s~D~~v~lwdl~~~~~~~~-~~~~-~~~~~~~~~~~~l~s~~~D~~-------------i~ 61 (203)
.++|||||++|+ .|+.+.+|++||+.+++.... .... ...+.|+ |++.|+.++.|.. |+
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence 358999999887 344456899999998774321 1111 1235788 9998888887743 99
Q ss_pred EEECCCceE----EEeeee-C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee----CCCeEEEEECCCCc
Q psy8891 62 FWDFRAEEK----VRDIEL-H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH----FDKKVRFWDFRAEE 129 (203)
Q Consensus 62 vwd~~~~~~----~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s----~d~~i~iWd~~~~~ 129 (203)
+|++.++.. +..... + ..+..+ .|+|||++|+... .+..|.++|+.++.
T Consensus 212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~-------------------~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 212 FHRLGTAQEDDRLVFGAIPAQHHRYVGA-------------------TVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EEETTSCGGGCEEEESCSGGGCCSEEEE-------------------EECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEECCCCcccceEEEecCCCCCeEEEEE-------------------EEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 999877542 111111 1 112333 3566666553322 23589999997653
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.59 E-value=4.6e-06 Score=70.94 Aligned_cols=150 Identities=16% Similarity=0.092 Sum_probs=85.5
Q ss_pred ceEEcCCCCEEEEEeCCC-----cEEEEeCCCC--C--eEEecCcCceEEEEeCCCCEEEEecC----CCeEEEEECCCc
Q psy8891 2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRST--E--TKFAGSSCNDLVTYDGAGTTIISGHF----DKKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~--~--~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~i~vwd~~~~ 68 (203)
.+.|+|||++|+..+.++ .|.+||+.++ + .............+.++++.|+..+. .+.|.+||+..+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 467999999988877554 8999999765 3 22222111111223477887776665 345999998774
Q ss_pred e-EEEeeee-CC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEEEEecc--ceEEE
Q psy8891 69 E-KVRDIEL-HG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIELH--GKITS 142 (203)
Q Consensus 69 ~-~~~~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~--~~v~~ 142 (203)
. ....+.. +. .+..++ +. ++.++++...|+..++|.+. ++...+.+..+ +.+..
T Consensus 352 ~~~~~~l~~~~~~~l~~~~-------------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~ 411 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVG-------------------IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASG 411 (741)
T ss_dssp SCEEEEEECCCSSEEEEEE-------------------EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEE
T ss_pred ccccEEEecCCCCeEEEEE-------------------EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEE
Confidence 2 2222221 11 122222 22 34578888889988887554 45545544432 22333
Q ss_pred EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEE----EecCCCcEEEEeCCCcee
Q psy8891 143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA----VGSIDGNIYVWDCNTEQV 195 (203)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----s~s~d~~v~~wd~~~~~~ 195 (203)
++. +++++.|+ +....++|++||+.+++.
T Consensus 412 ~~~------------------------s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 412 LSG------------------------RPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEC------------------------CBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eec------------------------CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 332 34444333 233467899999988763
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=8.8e-05 Score=56.74 Aligned_cols=123 Identities=11% Similarity=-0.028 Sum_probs=73.5
Q ss_pred ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee---
Q psy8891 2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--- 76 (203)
Q Consensus 2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--- 76 (203)
+.+|+|++. .+++...++.|..||..+++.. .........+.+.++++++++. . ..|.+||..+++.......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTT
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCC
Confidence 357888754 5667777899999999876532 2222223345677888777664 3 4599999877764322111
Q ss_pred --CCeEEEEEecCCCceEEEec--------------------------CCceEEEEcCCCCEEEEe-eCCCeEEEEECC
Q psy8891 77 --HGKITSLDLSKGTETKFAGS--------------------------SCNDLVTYDGAGTTIISG-HFDKKVRFWDFR 126 (203)
Q Consensus 77 --~~~v~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~~ 126 (203)
...+..+.+.+++...+... ....-++|+++|+.++.+ +.++.|.+||+.
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 12356666666654322211 011124677888766544 446788888875
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.53 E-value=3.8e-05 Score=57.80 Aligned_cols=155 Identities=7% Similarity=0.068 Sum_probs=90.5
Q ss_pred ceEEcCCCCEEEEEeCC---------------CcEEEEeCCCCCeE--EecCcCceEEEEe----CCCCEE-EEecCCCe
Q psy8891 2 CAKFLGDPTKVVSGSCD---------------RTLKIWDLRSTETK--FAGSSCNDLVTYD----GAGTTI-ISGHFDKK 59 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D---------------~~v~lwdl~~~~~~--~~~~~~~~~~~~~----~~~~~l-~s~~~D~~ 59 (203)
++++.++|...++.+.+ +.|..||.. ++.. .........+.++ ++++.| ++...++.
T Consensus 121 ~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred CEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 56788999888877665 567777765 3322 1111122345677 887655 45467899
Q ss_pred EEEEECC-CceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891 60 VRFWDFR-AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG 138 (203)
Q Consensus 60 i~vwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~ 138 (203)
|.+||+. .++... . ..+...+... .....-++++++|++.++...++.|.+||..+++....+..+.
T Consensus 200 i~~~~~~~~g~~~~-~------~~~~~~~~~~-----~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 200 LWSYDIKGPAKIEN-K------KVWGHIPGTH-----EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp EEEEEEEETTEEEE-E------EEEEECCCCS-----SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred EEEEECCCCCcccc-c------eEEEECCCCC-----CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence 9999976 332110 0 0000001000 0001124677888888877778999999988776555443321
Q ss_pred eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC
Q psy8891 139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT 192 (203)
Q Consensus 139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~ 192 (203)
. ....+++.++++ .+++...++.|..|++..
T Consensus 268 ~-----------------------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 268 E-----------------------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp S-----------------------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C-----------------------CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 0 123445567888 445556678999999875
No 215
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.52 E-value=1.3e-05 Score=59.55 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=95.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCc--eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeE
Q psy8891 4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCN--DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI 80 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~--~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v 80 (203)
.|+ ++....+.+.++.|+.+|+++++.... ..... .-+...+ +...+..-.++.+.+||..+.+.+.++...+.-
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG 138 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG 138 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce
Confidence 344 455667788889999999998764221 11111 1133332 234444457889999999999988887653221
Q ss_pred EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeE
Q psy8891 81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKV 160 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (203)
.. ..++++.|+.+..+++|.++|..+.+.+..++....-..+
T Consensus 139 wG---------------------Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v----------------- 180 (268)
T 3nok_A 139 WG---------------------LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV----------------- 180 (268)
T ss_dssp CC---------------------EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC-----------------
T ss_pred eE---------------------EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc-----------------
Confidence 11 1224556766667889999999998877766542100000
Q ss_pred EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.....+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus 181 -~~lNeLe~-~dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 181 -ELINELEC-ANGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -CCEEEEEE-ETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -ccccccEE-eCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 00011112 255555555568889999999999998875
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.50 E-value=0.00013 Score=54.18 Aligned_cols=170 Identities=8% Similarity=-0.005 Sum_probs=94.5
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL- 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~- 76 (203)
++++.++|...++...++.|..||.. ++.. ... ......+++++++...++...++.|..||.. ++. ..+..
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~ 95 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP 95 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence 46778999988877778999999988 4432 221 1122345677888888887778999999976 322 22221
Q ss_pred --CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEE
Q psy8891 77 --HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYY 151 (203)
Q Consensus 77 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 151 (203)
...+..+. ++++|+..++...++.|..||. +++.. .+... ..+..+.+.++..+
T Consensus 96 ~~~~~~~~i~-------------------~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 96 NPDSAPYGIT-------------------EGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp STTCCEEEEE-------------------ECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCE
T ss_pred CcCCCceeeE-------------------ECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCE
Confidence 11233333 4445555555555566666666 33322 22111 23455555443322
Q ss_pred EEeec--Ce---------eEE-------eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891 152 FVFAE--GF---------KVQ-------CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE 196 (203)
Q Consensus 152 ~~~~~--~~---------~~~-------~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~ 196 (203)
++... +. ... .....+.+.+++..+++...++.|..||. +++..
T Consensus 155 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 155 WFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred EEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 22211 00 000 01224456677777777667788888888 56544
No 217
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.50 E-value=8.1e-05 Score=55.47 Aligned_cols=157 Identities=7% Similarity=-0.012 Sum_probs=95.1
Q ss_pred eEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEec--Cc--CceEEEEeCCCCEEEEe-cCCCeEEEEECCCceEEEeee
Q psy8891 3 AKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFAG--SS--CNDLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKVRDIE 75 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~~--~~--~~~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~ 75 (203)
+.|++|+...++.+. +++|++.|+.+++..... .. ....+.+. ++.|+.+ -.++.+.++|..+.+.+.++.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~ 103 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT 103 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE
Confidence 567888644444443 689999999987754221 11 11223333 4455444 467899999999988877764
Q ss_pred eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891 76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155 (203)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (203)
.. .+.+. .+++||+.++.+..+++|.+.|..+.+.++.+.....-..
T Consensus 104 ~g--------~~~g~------------glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p------------- 150 (266)
T 2iwa_A 104 HQ--------MKDGW------------GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR------------- 150 (266)
T ss_dssp CC--------SSSCC------------EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE-------------
T ss_pred CC--------CCCeE------------EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc-------------
Confidence 32 01111 1233555566666788999999998887766653210000
Q ss_pred cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
......+.+. ++..++....++.|.+-|..++++++++.
T Consensus 151 -----~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 151 -----VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp -----CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred -----cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 0001122233 55445555568899999999999998875
No 218
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.49 E-value=0.00014 Score=54.03 Aligned_cols=87 Identities=7% Similarity=-0.008 Sum_probs=54.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-ee-e
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IE-L 76 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~-~ 76 (203)
++++.+++...++...++.|..||.......... ......+.+++++...++...++.|.+||. +++.... .. .
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 4677889988888777899999998632222221 112234567788888888778899999998 4433221 11 1
Q ss_pred CCeEEEEEecCCC
Q psy8891 77 HGKITSLDLSKGT 89 (203)
Q Consensus 77 ~~~v~~~~~~~~~ 89 (203)
...+..+++.+++
T Consensus 140 ~~~~~~i~~~~~g 152 (299)
T 2z2n_A 140 GSYPSFITLGSDN 152 (299)
T ss_dssp TCCEEEEEECTTS
T ss_pred CCCCceEEEcCCC
Confidence 1235555555544
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.42 E-value=0.00017 Score=57.51 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=81.7
Q ss_pred eEEcCCCCEEEEEeCC------CcEEEEeCCCCCeEEecC---cC---ceEEEEeCCCCEEEEecC--------------
Q psy8891 3 AKFLGDPTKVVSGSCD------RTLKIWDLRSTETKFAGS---SC---NDLVTYDGAGTTIISGHF-------------- 56 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D------~~v~lwdl~~~~~~~~~~---~~---~~~~~~~~~~~~l~s~~~-------------- 56 (203)
++.+|+| ..+|+..+ +.|-+.|..+.+....-. .. .--+.++|+.+.++|..+
T Consensus 143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 4678999 77776666 789999999876543211 11 111557899999999863
Q ss_pred -----CCeEEEEECCCceEEEeeeeC---CeEEEEEe--cCCCceEEEecC-----------------------------
Q psy8891 57 -----DKKVRFWDFRAEEKVRDIELH---GKITSLDL--SKGTETKFAGSS----------------------------- 97 (203)
Q Consensus 57 -----D~~i~vwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~----------------------------- 97 (203)
+.+|.+||+.+++.+.++... ....-+.| +|++...+..+.
T Consensus 222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence 789999999988777777653 12233333 666544332221
Q ss_pred --------------------CceEEEEcCCCCEEEEeeC-CCeEEEEECCC
Q psy8891 98 --------------------CNDLVTYDGAGTTIISGHF-DKKVRFWDFRA 127 (203)
Q Consensus 98 --------------------~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~~ 127 (203)
...-+.+++||++|+.+.+ .+.|.++|+..
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 1123557888998888877 46999999863
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.42 E-value=4.5e-05 Score=58.79 Aligned_cols=184 Identities=14% Similarity=0.046 Sum_probs=100.4
Q ss_pred ceEEcCCCCEEEEEe--CCCcEEEEeCCCCCeE-Eec--------CcCceEEEEeCCCCEEEEecC-----CCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVSGS--CDRTLKIWDLRSTETK-FAG--------SSCNDLVTYDGAGTTIISGHF-----DKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s--~D~~v~lwdl~~~~~~-~~~--------~~~~~~~~~~~~~~~l~s~~~-----D~~i~vwd~ 65 (203)
.++++++|+.+++.. .++.++||.+..++.. +.. .....-+++++++++.++-.. ++.|.+||+
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 467899999988864 2343667766433222 100 011233567787765444322 579999999
Q ss_pred CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEE-EEee---CCCeEEEEECCCCceEEEEec-----
Q psy8891 66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTI-ISGH---FDKKVRFWDFRAEEKVRDIEL----- 136 (203)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s---~d~~i~iWd~~~~~~~~~~~~----- 136 (203)
.+++.++.+.....+ .+.. . ...-+.+++++..+ ++-. .++.|.+||+.+++..+.+..
T Consensus 101 ~tg~~~~~~~~~~~~-----~~~~------~-~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPI-----TLSN------S-FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp TTTEEEEEEECCTTT-----SCTT------C-CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred CCCeEEEEEECChhh-----cccc------c-ccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 988866655432110 0000 0 00112344433333 4433 567888888877665443311
Q ss_pred -------------------------cceEEEEEecCCcE-EEEee-cCeeE------------------------Ee---
Q psy8891 137 -------------------------HGKITSLDLSKGKY-YFVFA-EGFKV------------------------QC--- 162 (203)
Q Consensus 137 -------------------------~~~v~~~~~~~~~~-~~~~~-~~~~~------------------------~~--- 162 (203)
...++.+.++++.. ++... .+..+ ..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 01246677776642 22221 11000 00
Q ss_pred eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~ 197 (203)
....+++++++.++++...++.|.+||..+|+...
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 11235677888889998899999999985566543
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.41 E-value=2.8e-05 Score=60.49 Aligned_cols=153 Identities=10% Similarity=-0.002 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--------CceE-EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--------CNDL-VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--------~~~~-~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
++..++.++.++.|..+|..+++.. ..... .... .....++..|+.++.++.|..+|..+++.+.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 4667888889999999999887653 11110 1111 11112456888889999999999999988766554
Q ss_pred CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891 77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE 156 (203)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 156 (203)
...+.. . .+ . .+..++.++.++.|..+|..+++.+........+.......
T Consensus 132 ~~~~~~-------~---------p~--~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~--------- 182 (376)
T 3q7m_A 132 AGEALS-------R---------PV--V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES--------- 182 (376)
T ss_dssp SSCCCS-------C---------CE--E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC---------
T ss_pred CCceEc-------C---------CE--E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC---------
Confidence 332100 0 00 0 12367778889999999999998877765543221110000
Q ss_pred CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
... ..+..++.++.++.+..+|..+|+.+-..+
T Consensus 183 ---------~~~--~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 183 ---------APT--TAFGAAVVGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp ---------CCE--EETTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred ---------CcE--EECCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 000 124567788889999999999998876543
No 222
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.40 E-value=3e-05 Score=65.30 Aligned_cols=174 Identities=7% Similarity=0.093 Sum_probs=102.2
Q ss_pred eEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCCeE--EecC----------cCceEEEEeCCCC--
Q psy8891 3 AKFLGDPTKVVSGSCDRT-------------------LKIWDLRSTETK--FAGS----------SCNDLVTYDGAGT-- 49 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~-------------------v~lwdl~~~~~~--~~~~----------~~~~~~~~~~~~~-- 49 (203)
.++.++...++.++.++. |..+|.++++.+ +... ....+..+..+++
T Consensus 235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~ 314 (668)
T 1kv9_A 235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR 314 (668)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence 467788888888887763 999999988753 2111 0111112223454
Q ss_pred -EEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecC-----------CCceEEE-----ecCCceEEEEcCCCCE
Q psy8891 50 -TIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSK-----------GTETKFA-----GSSCNDLVTYDGAGTT 110 (203)
Q Consensus 50 -~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~ 110 (203)
.|+.++.+|.+.++|.++++.+....... ....++... +...... +...-....|+|+...
T Consensus 315 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~ 394 (668)
T 1kv9_A 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (668)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE
Confidence 68999999999999999999875543322 011111000 0000000 0000011345555444
Q ss_pred EEE------------------------------------eeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEe
Q psy8891 111 IIS------------------------------------GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154 (203)
Q Consensus 111 l~s------------------------------------~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (203)
++. ..+++.|..||+.+++............
T Consensus 395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~------------- 461 (668)
T 1kv9_A 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN------------- 461 (668)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC-------------
T ss_pred EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc-------------
Confidence 432 2245789999998888766654332110
Q ss_pred ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
...+...+.+++.|+.|+.++.||.++|+++..++
T Consensus 462 -----------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 462 -----------GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp -----------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----------CceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 01122367788889999999999999999988774
No 223
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.39 E-value=0.00021 Score=52.37 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=91.7
Q ss_pred EEcCCCCEEEEEeCC--CcEEEEeCCCCCeEEec--CcC--ceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEeeee
Q psy8891 4 KFLGDPTKVVSGSCD--RTLKIWDLRSTETKFAG--SSC--NDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D--~~v~lwdl~~~~~~~~~--~~~--~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
.|+. +....+.+.+ ..|+.+|+.+++..... ... ..-+... ++.|+ ..-.++.+.+||..+.+.+.++..
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 3454 4555566654 48999999998754321 111 1122333 34444 445688999999999998888765
Q ss_pred CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891 77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE 156 (203)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 156 (203)
.+.-..+ .+++..|+.+..+++|.++|..+.+.++.++.... ...+
T Consensus 104 ~~~Gwgl---------------------t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---------g~~~---- 149 (243)
T 3mbr_X 104 PGEGWAL---------------------TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---------GRPL---- 149 (243)
T ss_dssp SSCCCEE---------------------EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---------TEEC----
T ss_pred CCCceEE---------------------eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---------Cccc----
Confidence 4321111 12344555555688999999999887776654210 0000
Q ss_pred CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.....+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus 150 -----~~lNeLe~-~~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 150 -----DNLNELEW-VNGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp -----CCEEEEEE-ETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred -----ccceeeEE-eCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 00001111 245545444467789999999999998875
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.37 E-value=7.7e-05 Score=59.42 Aligned_cols=174 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEec----------CCCeEEEEECCCc
Q psy8891 7 GDPTKVVSGSCD-----RTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDFRAE 68 (203)
Q Consensus 7 ~~~~~l~t~s~D-----~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~~~~ 68 (203)
+++.+++..... ++|.+.|+.+.+... .+..+ -+.++|+++.|+.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766665543 699999998866432 23333 477899999887775 4779999999999
Q ss_pred eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccceEEE----
Q psy8891 69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITS---- 142 (203)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~~v~~---- 142 (203)
+.+.++...+.-.. ..+ ....-+.++|||++++.+.. +++|.+.|+.+++.+.++...+....
T Consensus 160 ~vv~~I~v~g~~r~----------~~g-~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g 228 (426)
T 3c75_H 160 LPIADIELPDAPRF----------LVG-TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS 228 (426)
T ss_dssp CEEEEEEETTCCCC----------CBS-CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred cEEEEEECCCcccc----------ccC-CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC
Confidence 88777654210000 000 00011457889999998875 57999999999998888776432111
Q ss_pred ----EEecCC-cEEEEeecCeeEEe------------eeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891 143 ----LDLSKG-KYYFVFAEGFKVQC------------DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE 193 (203)
Q Consensus 143 ----~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~ 193 (203)
+.++++ ....+......+.. .+....+.++++.++..+..+.|.+.|...+
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 122222 22212111111100 0012345677777666677889999998643
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.36 E-value=8.5e-05 Score=56.14 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=45.3
Q ss_pred eEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECC
Q psy8891 3 AKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 66 (203)
Q Consensus 3 ~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~ 66 (203)
..|+|+++ .++++..++.|..|+.......+. .......+.++++++++++...++.|.+||..
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 57899998 677888899999999843322222 22223446788899877776667899999975
No 226
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.35 E-value=8.7e-05 Score=54.57 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=90.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-C--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-S--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H 77 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~ 77 (203)
++++.+++..+++.. ++.|..||.......... . .....++++++++..++...++.|.+||............ .
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL 149 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence 577889988666655 899999998764432211 1 1223466788888888877889999998655433221111 1
Q ss_pred CeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891 78 GKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~ 134 (203)
..+..+++.+++...++.... ..-++++++|...++...++.|.+||....... ..
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~ 228 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VL 228 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-EC
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-ee
Confidence 234455555554422221111 123567888877777777889999998754432 22
Q ss_pred ecc--ceEEEEEecCCcEEEEe
Q psy8891 135 ELH--GKITSLDLSKGKYYFVF 154 (203)
Q Consensus 135 ~~~--~~v~~~~~~~~~~~~~~ 154 (203)
... ..+..+.++++..+++.
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEE
T ss_pred ccCCCCCceeEEECCCCCEEEE
Confidence 221 34777787765555444
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.33 E-value=0.00011 Score=57.03 Aligned_cols=176 Identities=8% Similarity=0.009 Sum_probs=96.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD 84 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~ 84 (203)
++..++.++.|+.|..+|..+++.. .... ........ .+..++.++.++.+..+|.++++.+.......++..+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 5567888899999999999987753 1111 11111112 24588888899999999999998877665443321110
Q ss_pred ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-----------EEEE-EecCCcEEE
Q psy8891 85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-----------ITSL-DLSKGKYYF 152 (203)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-----------v~~~-~~~~~~~~~ 152 (203)
. ... .+ . .+..++.++.++.|..+|..+++.+........ +... .+..+..++
T Consensus 180 ~--~~~---------~~--~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~ 244 (376)
T 3q7m_A 180 G--ESA---------PT--T--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA 244 (376)
T ss_dssp C--CCC---------CE--E--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred C--CCC---------cE--E--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence 0 000 00 0 123566777788888888888877665543211 0000 011111111
Q ss_pred ---------Eee-cCeeE-Eeee-EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 153 ---------VFA-EGFKV-QCDF-TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 153 ---------~~~-~~~~~-~~~~-~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
... .+... .... .......++..++.++.++.|..+|..+|+.+-..+
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred EecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 110 11100 0000 001122356788888899999999999998876543
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.32 E-value=0.00026 Score=56.06 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=46.0
Q ss_pred eEEcCCCCEEEEEeCCC--cEEEEeCCCCCe--EE----e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 3 AKFLGDPTKVVSGSCDR--TLKIWDLRSTET--KF----A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~--~v~lwdl~~~~~--~~----~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
++|++++..|+.++.++ .|.++|...... .. . .......++++|++..|+.+..++.|+.||...+..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence 67899999999988876 788888765332 12 1 111122356788555666677789999999876653
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.32 E-value=0.00026 Score=53.46 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=32.7
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec----C--cCceEEEEeCCCCEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG----S--SCNDLVTYDGAGTTIIS 53 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~----~--~~~~~~~~~~~~~~l~s 53 (203)
.++++++|+.+++...++.|..||.. ++.. ... . ....-+.++++++..+|
T Consensus 90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 46788999977766667889999986 3321 111 0 01122567888888886
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.28 E-value=0.00016 Score=61.01 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=45.4
Q ss_pred ceEEcCCCCEEEEEeCCCc-------------EEEEeCCCCC----eEEecCc--C--ceEEEEeCCCCEEE-Eec---C
Q psy8891 2 CAKFLGDPTKVVSGSCDRT-------------LKIWDLRSTE----TKFAGSS--C--NDLVTYDGAGTTII-SGH---F 56 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~-------------v~lwdl~~~~----~~~~~~~--~--~~~~~~~~~~~~l~-s~~---~ 56 (203)
.++|+ |++.|+.++.|.. |++|++.+.. ..+.... . ...+.++++++.|+ +.+ .
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 46899 9999999888854 9999997643 2232222 1 22356899999764 332 3
Q ss_pred CCeEEEEECCCc
Q psy8891 57 DKKVRFWDFRAE 68 (203)
Q Consensus 57 D~~i~vwd~~~~ 68 (203)
+..|.++|+.++
T Consensus 258 ~~~i~~~d~~~~ 269 (693)
T 3iuj_A 258 GNRLYVKDLSQE 269 (693)
T ss_dssp CCEEEEEETTST
T ss_pred CcEEEEEECCCC
Confidence 368999999765
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=0.00021 Score=57.03 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=74.3
Q ss_pred CCCCEE-EEEeCCCcEEEEeCCCCC--e-EEecC-----------cCceEEEEeCCCCEEEEecCC------CeEEEEEC
Q psy8891 7 GDPTKV-VSGSCDRTLKIWDLRSTE--T-KFAGS-----------SCNDLVTYDGAGTTIISGHFD------KKVRFWDF 65 (203)
Q Consensus 7 ~~~~~l-~t~s~D~~v~lwdl~~~~--~-~~~~~-----------~~~~~~~~~~~~~~l~s~~~D------~~i~vwd~ 65 (203)
++.++| ++|-.++.|.+.|+.+.. . ..... ..-.-+...|++ .++|+..+ +.+-+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 677765 557778999999997531 1 11100 000113456787 77777655 78999999
Q ss_pred CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-------------------CCCeEEEEECC
Q psy8891 66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-------------------FDKKVRFWDFR 126 (203)
Q Consensus 66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-------------------~d~~i~iWd~~ 126 (203)
++.+.+.++..... + .....-+.|+|+++.+++.. ++.+|.+||+.
T Consensus 172 ~T~~v~~~~~~~~~-------~--------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-------D--------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTCCEEEECCSBCT-------T--------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCeEEEEEccCCC-------C--------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 98888777653211 0 00011145678888888885 36899999999
Q ss_pred CCceEEEEecc
Q psy8891 127 AEEKVRDIELH 137 (203)
Q Consensus 127 ~~~~~~~~~~~ 137 (203)
+++.+.++...
T Consensus 237 ~~k~~~tI~vg 247 (462)
T 2ece_A 237 KRKRIHSLTLG 247 (462)
T ss_dssp TTEEEEEEESC
T ss_pred CCcEeeEEecC
Confidence 88877777763
No 232
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.20 E-value=0.00014 Score=60.32 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=89.3
Q ss_pred CcEEEEeCCCCCeEE--ecCc---------CceEE-EEe-CCCC---EEEEecCCCeEEEEECCCceEEEeeeeCCe---
Q psy8891 19 RTLKIWDLRSTETKF--AGSS---------CNDLV-TYD-GAGT---TIISGHFDKKVRFWDFRAEEKVRDIELHGK--- 79 (203)
Q Consensus 19 ~~v~lwdl~~~~~~~--~~~~---------~~~~~-~~~-~~~~---~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~--- 79 (203)
++|..+|..+++.+- .... ...++ ... .+++ .|+.++.+|.+.++|.++++.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 589999999877532 1110 01122 221 4563 788999999999999999998876654321
Q ss_pred EEEEEecCC-------------------CceEEE-----ecCCceEEEEcCCCCEEEEee--------------------
Q psy8891 80 ITSLDLSKG-------------------TETKFA-----GSSCNDLVTYDGAGTTIISGH-------------------- 115 (203)
Q Consensus 80 v~~~~~~~~-------------------~~~~~~-----~~~~~~~~~~~~~~~~l~s~s-------------------- 115 (203)
...++.... ...... +...-....|+|+...++...
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 122211100 000000 000011234555544444432
Q ss_pred -------------CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCC
Q psy8891 116 -------------FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID 182 (203)
Q Consensus 116 -------------~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 182 (203)
.++.|..||+.+++.+.+........ .......+..++.|+.|
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~------------------------~g~~~tagglvf~g~~d 506 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW------------------------AGVLATAGNLVFTGTGD 506 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC------------------------SCCEEETTTEEEEECTT
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc------------------------ccceEeCCCEEEEECCC
Confidence 24677777777777665544321110 00011246678889999
Q ss_pred CcEEEEeCCCceeeeeec
Q psy8891 183 GNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 183 ~~v~~wd~~~~~~~~~~~ 200 (203)
+.++.||.++|+++-.++
T Consensus 507 g~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEETTTCCEEEEEE
T ss_pred CcEEEEECCCCCEEEEec
Confidence 999999999999987765
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.19 E-value=0.00045 Score=53.13 Aligned_cols=73 Identities=15% Similarity=0.013 Sum_probs=46.4
Q ss_pred ceEEcCCCCEEEEEeC-----CCcEEEEeCCCCCeE--EecC-------cCceEEEEeCCCCE-EEEec---CCCeEEEE
Q psy8891 2 CAKFLGDPTKVVSGSC-----DRTLKIWDLRSTETK--FAGS-------SCNDLVTYDGAGTT-IISGH---FDKKVRFW 63 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-----D~~v~lwdl~~~~~~--~~~~-------~~~~~~~~~~~~~~-l~s~~---~D~~i~vw 63 (203)
.+++.++++..++-+. ++.|.+||+.+++.. .... ....-+++++++.. .++-. .++.|.+|
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 5788899876665443 689999999876532 1111 11133566765444 45544 68899999
Q ss_pred ECCCceEEEee
Q psy8891 64 DFRAEEKVRDI 74 (203)
Q Consensus 64 d~~~~~~~~~~ 74 (203)
|+.+++..+.+
T Consensus 151 d~~~g~~~r~~ 161 (343)
T 2qe8_A 151 DLQTGLAARVL 161 (343)
T ss_dssp ETTTCCEEEEC
T ss_pred ECCCCCEEEEe
Confidence 99877655443
No 234
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.18 E-value=0.00097 Score=50.09 Aligned_cols=142 Identities=12% Similarity=0.037 Sum_probs=80.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC---cC--ceEEEEeCCCCEEEEecC---------CCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS---SC--NDLVTYDGAGTTIISGHF---------DKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~---~~--~~~~~~~~~~~~l~s~~~---------D~~i~vwd~ 65 (203)
+++++++++.+++. ++.|.+||..+++... ... .. ..-+.++++++..++... ....+||.+
T Consensus 58 ~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 58 SVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp EEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred EEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEE
Confidence 46789999955553 5789999998755321 111 11 123567889886665422 234566665
Q ss_pred CCc-eEEEeeeeCCeEEEEEecCCCceEEEe-cCCc------------------------------eEEEEcCCCCEEEE
Q psy8891 66 RAE-EKVRDIELHGKITSLDLSKGTETKFAG-SSCN------------------------------DLVTYDGAGTTIIS 113 (203)
Q Consensus 66 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~------------------------------~~~~~~~~~~~l~s 113 (203)
... +.......-.....+++++++..++.. .... .-++++++|++.++
T Consensus 136 d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 136 FPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp CTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred ECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 432 222222222234566777766544321 1111 11345667776666
Q ss_pred eeCCCeEEEEECCCCceEEEEecc-ceEEEEEe
Q psy8891 114 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDL 145 (203)
Q Consensus 114 ~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~ 145 (203)
...++.|..||..+++.+..+..+ ..+.++.+
T Consensus 216 ~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 216 CYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp EETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred EcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence 666778888998888877777655 33444443
No 235
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.15 E-value=0.001 Score=49.30 Aligned_cols=67 Identities=7% Similarity=-0.113 Sum_probs=47.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
++.+.+++...++...++.|..||.. ++... ... .....+.++++++..++...++.|..||.. ++.
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 46678899888887788999999987 44321 111 122335667888888877778899999987 443
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.11 E-value=6.1e-05 Score=55.80 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=75.3
Q ss_pred EEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC
Q psy8891 42 VTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK 118 (203)
Q Consensus 42 ~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~ 118 (203)
+.++ ++.+..|.|.+| .|+++|+++++.++.+..........+.. ++..|+...+ ++
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-------------------~g~~ly~ltw~~~ 107 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-------------------WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-------------------ETTEEEEEESSSS
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-------------------eCCEEEEEEeeCC
Confidence 4566 566777888876 99999999999887776543322211111 2334555554 78
Q ss_pred eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
.+.++|..+.+.+.++.....- ..++++++.|+.+..++.|.++|..+.+.+++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--------------------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--------------------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--------------------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred EEEEEECccCcEEEEEECCCCc--------------------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 9999999999988887654310 01224666666655577788899888888877
Q ss_pred ec
Q psy8891 199 LK 200 (203)
Q Consensus 199 ~~ 200 (203)
++
T Consensus 162 I~ 163 (262)
T 3nol_A 162 IT 163 (262)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 237
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.02 E-value=0.0013 Score=54.44 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=87.6
Q ss_pred cEEEEeCCCCCeE--EecC--------cC-ceEE-EEeCCCC---EEEEecCCCeEEEEECCCceEEEeeeeCCe---EE
Q psy8891 20 TLKIWDLRSTETK--FAGS--------SC-NDLV-TYDGAGT---TIISGHFDKKVRFWDFRAEEKVRDIELHGK---IT 81 (203)
Q Consensus 20 ~v~lwdl~~~~~~--~~~~--------~~-~~~~-~~~~~~~---~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~---v~ 81 (203)
+|..+|.++++.+ +... .. ..++ ....+++ .++.++.+|.+.+.|.++++.+........ ..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5889999887753 1111 01 1112 2223563 577889999999999999998776654321 11
Q ss_pred EEEecCCC-------------ceEEE-----ecCCceEEEEcCCCCEEEEee----------------------------
Q psy8891 82 SLDLSKGT-------------ETKFA-----GSSCNDLVTYDGAGTTIISGH---------------------------- 115 (203)
Q Consensus 82 ~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~~~~l~s~s---------------------------- 115 (203)
.+++.... ..... +...-....|+|+...++...
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 11111100 00000 000011234566655555543
Q ss_pred ---------CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEE
Q psy8891 116 ---------FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY 186 (203)
Q Consensus 116 ---------~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~ 186 (203)
.++.|..||+.+++.+.++.....+. ...+...+..++.++.|+.|+
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~------------------------~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW------------------------GGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCC------------------------SBCEEETTTEEEEECTTSEEE
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCCcc------------------------ceeEEECCCEEEEEcCCCeEE
Confidence 24567777777776655543321110 001122456777799999999
Q ss_pred EEeCCCceeeeeec
Q psy8891 187 VWDCNTEQVEAVLK 200 (203)
Q Consensus 187 ~wd~~~~~~~~~~~ 200 (203)
.+|.++|+++-.++
T Consensus 489 a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 489 ALDNKDGKELWNFK 502 (571)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99999999998775
No 238
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.01 E-value=7.6e-05 Score=55.39 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=74.7
Q ss_pred EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeE
Q psy8891 42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKV 120 (203)
Q Consensus 42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i 120 (203)
+.++. +.+.+|.+.++.|+++|+++++.++.+ .........+.. ++..|+.. -.++.+
T Consensus 60 L~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~-------------------~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 60 LVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS-------------------DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE-------------------CSSCEEEEESSSCEE
T ss_pred EEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE-------------------eCCEEEEEEccCCEE
Confidence 44553 567788899999999999999887766 444322211111 12233333 357899
Q ss_pred EEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 121 ~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.++|..+.+.+.++....+- ..++++++.|+.+..++.|.++|..+.+.+++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eG--------------------------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEG--------------------------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp EEEETTTTEEEEEEECSSCC--------------------------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEECCcCcEEEEEeCCCce--------------------------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 99999999988887653210 0122456676666678899999999988888775
No 239
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.98 E-value=0.0023 Score=47.36 Aligned_cols=87 Identities=6% Similarity=-0.085 Sum_probs=54.4
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-ee-
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IE- 75 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~- 75 (203)
++++.+++...++...++.|..+|.. ++.. .... .....+.++++++..++...++.|..+|.. ++.... +.
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence 35677888887877778899999987 4432 2211 122345667888888887778899999987 443321 11
Q ss_pred eCCeEEEEEecCCCc
Q psy8891 76 LHGKITSLDLSKGTE 90 (203)
Q Consensus 76 ~~~~v~~~~~~~~~~ 90 (203)
....+..+.+.+++.
T Consensus 144 ~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 144 KGSYPAFITLGSDNA 158 (300)
T ss_dssp TTCCEEEEEECTTSS
T ss_pred CCCCceeEEECCCCC
Confidence 113355566655544
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.96 E-value=0.00022 Score=53.13 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=73.1
Q ss_pred EEEEeCCCCEEEEecC--CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-C
Q psy8891 41 LVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-D 117 (203)
Q Consensus 41 ~~~~~~~~~~l~s~~~--D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d 117 (203)
-+.+++++...++.+. ++.|++.|+.+++.+..+.......... +..++..|+.+.+ +
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeG-------------------i~~~g~~lyv~t~~~ 85 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEG-------------------LTLLNEKLYQVVWLK 85 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEE-------------------EEEETTEEEEEETTC
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEE-------------------EEEeCCEEEEEEecC
Confidence 3667777655555453 6899999999999887765322111100 1112334555544 6
Q ss_pred CeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891 118 KKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE 196 (203)
Q Consensus 118 ~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~ 196 (203)
+++.++|..+.+.+.++... ..- ..+++|++.++.+..+++|.+.|..+.+.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g--------------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG--------------------------WGLATDGKILYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC--------------------------CEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCe--------------------------EEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence 79999999998887776543 110 113356666666556788999999888888
Q ss_pred eeec
Q psy8891 197 AVLK 200 (203)
Q Consensus 197 ~~~~ 200 (203)
++++
T Consensus 140 ~~I~ 143 (266)
T 2iwa_A 140 KKHN 143 (266)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.94 E-value=0.00033 Score=51.35 Aligned_cols=113 Identities=15% Similarity=0.054 Sum_probs=74.6
Q ss_pred EEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCC
Q psy8891 42 VTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDK 118 (203)
Q Consensus 42 ~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~ 118 (203)
+.+++ +.+..|.+.+| .|+++|+.+++.++.+..........+.. .+..|+... .++
T Consensus 26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~-------------------~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA-------------------WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE-------------------ETTEEEEEESSSS
T ss_pred EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE-------------------eCCEEEEEEeeCC
Confidence 45665 55677777764 99999999999887776554332222111 122344333 478
Q ss_pred eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
.+.++|..+.+.+.++.....-- .++++++.|+.+-.++.|.++|..+.+.+++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gw--------------------------glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGW--------------------------ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCC--------------------------EEEECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEEEECCcCcEEEEEeCCCCce--------------------------EEeeCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 99999999998888876543110 1224555555555688899999999888887
Q ss_pred ec
Q psy8891 199 LK 200 (203)
Q Consensus 199 ~~ 200 (203)
++
T Consensus 140 I~ 141 (243)
T 3mbr_X 140 IK 141 (243)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 242
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.91 E-value=0.00011 Score=61.93 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=45.0
Q ss_pred CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137 (203)
Q Consensus 58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~ 137 (203)
+.|..||+.+++.+.......++... .+..++..++.++.|+.+++||.++++.+..+...
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g-------------------~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGG-------------------TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC-------------------EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCc-------------------ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 78999999988877766543221111 12234567888899999999999999999988765
Q ss_pred c
Q psy8891 138 G 138 (203)
Q Consensus 138 ~ 138 (203)
.
T Consensus 518 ~ 518 (677)
T 1kb0_A 518 T 518 (677)
T ss_dssp S
T ss_pred C
Confidence 4
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.86 E-value=0.0033 Score=52.29 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=47.3
Q ss_pred EEcCCCCEEEEEeCC----------------CcEEEEeCCCCCeE--EecCcC---------ceEE-EEe-CCC---CEE
Q psy8891 4 KFLGDPTKVVSGSCD----------------RTLKIWDLRSTETK--FAGSSC---------NDLV-TYD-GAG---TTI 51 (203)
Q Consensus 4 ~~~~~~~~l~t~s~D----------------~~v~lwdl~~~~~~--~~~~~~---------~~~~-~~~-~~~---~~l 51 (203)
++.++..+++.+..+ ++|..+|.++++.+ +..... ..++ ... .++ ..+
T Consensus 247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v 326 (599)
T 1w6s_A 247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLL 326 (599)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEE
T ss_pred eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEE
Confidence 345666777776655 37899999987753 211111 1122 222 456 467
Q ss_pred EEecCCCeEEEEECCCceEEEeee
Q psy8891 52 ISGHFDKKVRFWDFRAEEKVRDIE 75 (203)
Q Consensus 52 ~s~~~D~~i~vwd~~~~~~~~~~~ 75 (203)
+.++.+|.+.+.|.++++.+....
T Consensus 327 ~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 327 THPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCcEEEEEECCCCCEeeccc
Confidence 888999999999999999876654
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.85 E-value=0.00013 Score=61.63 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=46.2
Q ss_pred CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
+++|+.||+.+++.+.....+.++... .+...+..++.++.|+.++.||.++|+.+.++++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g-------------------~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGG-------------------TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCC-------------------EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCc-------------------cceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 478999999998887766554322110 1223456888999999999999999999988877
Q ss_pred cc
Q psy8891 137 HG 138 (203)
Q Consensus 137 ~~ 138 (203)
..
T Consensus 515 ~~ 516 (689)
T 1yiq_A 515 AS 516 (689)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.82 E-value=0.00085 Score=52.39 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=76.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCe-EEec--------------CcCceEEEEeCCCCEEEEecC---------CCeEE
Q psy8891 6 LGDPTKVVSGSCDRTLKIWDLRSTET-KFAG--------------SSCNDLVTYDGAGTTIISGHF---------DKKVR 61 (203)
Q Consensus 6 ~~~~~~l~t~s~D~~v~lwdl~~~~~-~~~~--------------~~~~~~~~~~~~~~~l~s~~~---------D~~i~ 61 (203)
++++..++-.+. ++|.+.|+..... .... ......+.++++++.++.+.. ++.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 455555555556 8888888865321 1100 000112568899887776432 23566
Q ss_pred EEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCC-EEEEee-CCCeEEEEECCCCceEEEEeccce
Q psy8891 62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGT-TIISGH-FDKKVRFWDFRAEEKVRDIELHGK 139 (203)
Q Consensus 62 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~d~~i~iWd~~~~~~~~~~~~~~~ 139 (203)
++|+.+.+.+..+........+++ +++|+ .+++.. .+++|.++|+.+++.++.+.....
T Consensus 298 ViD~~t~~vv~~i~vg~~p~gi~~-------------------s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 298 SVTASVGQTSGPISNGHDSDAIIA-------------------AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEESSSCCEEECCEEEEEECEEEE-------------------CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEECCCCeEEEEEECCCCcceEEE-------------------CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 999999998887765444444444 45554 556666 489999999999998888876554
Q ss_pred EEEEEe
Q psy8891 140 ITSLDL 145 (203)
Q Consensus 140 v~~~~~ 145 (203)
...+.+
T Consensus 359 P~~i~~ 364 (368)
T 1mda_H 359 PESLSV 364 (368)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 444443
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.79 E-value=0.00078 Score=55.54 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=119.1
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCCeEE--ecC--cCceEEEE-e-CCCCEEEEec------------------CCCeEEE
Q psy8891 8 DPTKVVSGS-CDRTLKIWDLRSTETKF--AGS--SCNDLVTY-D-GAGTTIISGH------------------FDKKVRF 62 (203)
Q Consensus 8 ~~~~l~t~s-~D~~v~lwdl~~~~~~~--~~~--~~~~~~~~-~-~~~~~l~s~~------------------~D~~i~v 62 (203)
||++|+... .+..|.+-|+.+.++.. ... .....+++ . |++++|+.++ .++.+-+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 788776544 45669999999866432 221 11223444 4 8888888884 3568999
Q ss_pred EECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce---------------EEEE--------cCCCCEEEEeeCCCe
Q psy8891 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND---------------LVTY--------DGAGTTIISGHFDKK 119 (203)
Q Consensus 63 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~--------~~~~~~l~s~s~d~~ 119 (203)
.|..+.+...++...+....+++++++..++..+.... +..+ .++|+.... +.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~ 255 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NG 255 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TT
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----Cc
Confidence 99999988888776555566778888887776654321 1111 234543332 45
Q ss_pred EEEEECCC--Cce-EEEEeccceEEEEEecCCcE-EEEeecCe--e---------------------EE------eeeEE
Q psy8891 120 VRFWDFRA--EEK-VRDIELHGKITSLDLSKGKY-YFVFAEGF--K---------------------VQ------CDFTR 166 (203)
Q Consensus 120 i~iWd~~~--~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~---------------------~~------~~~~~ 166 (203)
|.+.|.++ +.. +..+........+.++++.. +++...+. . +. .....
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 99999987 555 56666555666777777644 33322110 0 00 12245
Q ss_pred EEEEcCCCEEEEecCCCcEEEEeCCC----------ceeeeeecc
Q psy8891 167 AVFVVDDDYVAVGSIDGNIYVWDCNT----------EQVEAVLKD 201 (203)
Q Consensus 167 ~~~~~~~~~l~s~s~d~~v~~wd~~~----------~~~~~~~~~ 201 (203)
+.|+++|...++...|+.|..||+.+ .+.+..+..
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 67899994445566799999999876 556666543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.58 E-value=0.011 Score=43.31 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=50.4
Q ss_pred ceEEcCCCCEEE-EEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVV-SGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
.+++.+++..|+ +-..++.|..+|+.+.... ... ......+++++++..|+ +-...+.|.++|+...........
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~ 119 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC
Confidence 456788666555 4455789999998764322 111 12223466777655554 445677999999864332111111
Q ss_pred C-CeEEEEEecCCCce
Q psy8891 77 H-GKITSLDLSKGTET 91 (203)
Q Consensus 77 ~-~~v~~~~~~~~~~~ 91 (203)
. .....+++.++...
T Consensus 120 ~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 120 GLVNPRGIVTDPVRGN 135 (267)
T ss_dssp SCSSEEEEEEETTTTE
T ss_pred CCCCccEEEEeeCCCE
Confidence 1 23456666664433
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.57 E-value=0.0054 Score=51.67 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=97.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeE--EecCc------CceEEEEeCCCCEEEEecC------CCeEEEEECCCceEEEe
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSS------CNDLVTYDGAGTTIISGHF------DKKVRFWDFRAEEKVRD 73 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~------~~~~~~~~~~~~~l~s~~~------D~~i~vwd~~~~~~~~~ 73 (203)
++.+++.++.|+.|..+|..+++.. ..... ......+. + ..|+.+.. ++.|..+|.++++.+..
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 3567888899999999999987753 11110 00000111 2 35555432 68999999999998876
Q ss_pred eeeCC--eEEE-----EE-ecC--CCceE---EEecCCceEEEEcCCCCEEEEeeCCC-------------------eEE
Q psy8891 74 IELHG--KITS-----LD-LSK--GTETK---FAGSSCNDLVTYDGAGTTIISGHFDK-------------------KVR 121 (203)
Q Consensus 74 ~~~~~--~v~~-----~~-~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~d~-------------------~i~ 121 (203)
+.... +... +. -.+ .+..+ ..+........++++...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 64310 0000 00 000 00000 01111112356777777888887665 489
Q ss_pred EEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC---EEEEecCCCcEEEEeCCCceeee
Q psy8891 122 FWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD---YVAVGSIDGNIYVWDCNTEQVEA 197 (203)
Q Consensus 122 iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~s~d~~v~~wd~~~~~~~~ 197 (203)
.+|.++|+.+..++.... ........ ... ...+..+++ .++.++.+|.++++|..+|+++.
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~-~~~--------------~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQ-QIT--------------LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCS-CEE--------------EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCC-CcE--------------EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 999999998877764311 00000000 000 001112443 68899999999999999999985
Q ss_pred ee
Q psy8891 198 VL 199 (203)
Q Consensus 198 ~~ 199 (203)
.+
T Consensus 339 ~~ 340 (668)
T 1kv9_A 339 AE 340 (668)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.57 E-value=0.0078 Score=49.68 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=64.5
Q ss_pred eEEcCCCCEEEEEeCCC--------------------------------------cEEEEeCCC--CCe---EEecCcCc
Q psy8891 3 AKFLGDPTKVVSGSCDR--------------------------------------TLKIWDLRS--TET---KFAGSSCN 39 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~--------------------------------------~v~lwdl~~--~~~---~~~~~~~~ 39 (203)
++++|||+++++.+.+. .|.+.|..+ .+. ........
T Consensus 200 ~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P 279 (595)
T 1fwx_A 200 CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP 279 (595)
T ss_dssp EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC
T ss_pred eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc
Confidence 57889999998888664 366666665 221 11111111
Q ss_pred eEEEEeCCCCEEEEe-cCCCeEEEEECCCceEE--EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC
Q psy8891 40 DLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKV--RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116 (203)
Q Consensus 40 ~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 116 (203)
..+.++|||++++.+ ..+.+|.++|+.+.+.. ..+.....+.. .... ..-.....|+++|...++.--
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~v--------G~gP~h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPEL--------GLGPLHTAFDGRGNAYTSLFL 350 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBC--------CSCEEEEEECTTSEEEEEETT
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCC--------CCCcceEEECCCCeEEEEEec
Confidence 236788999965554 57889999999865310 00111111100 0000 000123457778833344556
Q ss_pred CCeEEEEECCC
Q psy8891 117 DKKVRFWDFRA 127 (203)
Q Consensus 117 d~~i~iWd~~~ 127 (203)
|++|..||+.+
T Consensus 351 dsqV~kwdi~~ 361 (595)
T 1fwx_A 351 DSQVVKWNIED 361 (595)
T ss_dssp TTEEEEEEHHH
T ss_pred CCcEEEEEhhH
Confidence 89999999876
No 250
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.49 E-value=0.019 Score=43.65 Aligned_cols=120 Identities=12% Similarity=0.033 Sum_probs=64.8
Q ss_pred ceEEcCCCCEEEEEeCC----CcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECC--Cc-eEE
Q psy8891 2 CAKFLGDPTKVVSGSCD----RTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR--AE-EKV 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D----~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~--~~-~~~ 71 (203)
.++++|+|+..++...+ ....||.+..++.. .........++++++++.| ++...++.|.+||+. ++ +..
T Consensus 138 ~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~ 217 (326)
T 2ghs_A 138 DGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG 217 (326)
T ss_dssp EEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred CEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc
Confidence 46788999876665422 23344443333321 1111122346788999866 444567899999986 44 211
Q ss_pred --EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891 72 --RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137 (203)
Q Consensus 72 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~ 137 (203)
..+. .+... ... ..-++++++|.+.++...++.|.+||. +++.+..+..+
T Consensus 218 ~~~~~~--------~~~~~-~~~------p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 218 KAEVFI--------DSTGI-KGG------MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp CCEEEE--------ECTTS-SSE------EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred CceEEE--------ECCCC-CCC------CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 0110 01000 000 012456777876666656689999998 56665555443
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.35 E-value=0.0025 Score=52.69 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=41.8
Q ss_pred CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
++.+..||+.+++.+........+.. .. ....+..++.++.|+.|+.+|.++++.+.++..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~-------~~------------~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWG-------GT------------LYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCS-------BC------------EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEecCCCCccc-------ee------------EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 46788888887776655543221110 00 011345677789999999999999999888876
Q ss_pred cc
Q psy8891 137 HG 138 (203)
Q Consensus 137 ~~ 138 (203)
..
T Consensus 504 ~~ 505 (571)
T 2ad6_A 504 PS 505 (571)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.28 E-value=0.0025 Score=52.83 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=42.8
Q ss_pred CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
++.|..||+.+++.+.......++. ...+ ...+..++.++.|+.++.+|.++|+.+.+++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~-------~g~~------------~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLW-------AGVL------------ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCC-------SCCE------------EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCCCCc-------ccce------------EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 5778888888877665544321110 0000 11345788899999999999999999988877
Q ss_pred cce
Q psy8891 137 HGK 139 (203)
Q Consensus 137 ~~~ 139 (203)
...
T Consensus 526 ~~g 528 (582)
T 1flg_A 526 GSG 528 (582)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 253
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.23 E-value=0.043 Score=45.98 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=45.1
Q ss_pred eEEcCCCCEEEEEeC-CCcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEec-CC-----CeEEEEECCCce
Q psy8891 3 AKFLGDPTKVVSGSC-DRTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGH-FD-----KKVRFWDFRAEE 69 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~-~D-----~~i~vwd~~~~~ 69 (203)
+++..+++.++.|+. +..+.+||..+.+-.... ......+...++++.++.|| .+ ..+.+||..+.+
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 466789999999984 568999998765422111 11112234446888999998 45 579999987765
No 254
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.054 Score=41.49 Aligned_cols=74 Identities=3% Similarity=0.028 Sum_probs=47.4
Q ss_pred ceEEcCCCCEEEEEe-CCCcEEEEeCCCCCe-EEecCc---------CceEEEE---eCCCCEEEEec------------
Q psy8891 2 CAKFLGDPTKVVSGS-CDRTLKIWDLRSTET-KFAGSS---------CNDLVTY---DGAGTTIISGH------------ 55 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~~~~-~~~~~~---------~~~~~~~---~~~~~~l~s~~------------ 55 (203)
+.+|.+...+++.++ ..++|..||...+.. ...... ...-+.+ ++++.+++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 578888777777777 799999999975432 111110 1133567 57766666433
Q ss_pred -CCCeEEEEECC---CceEEEeee
Q psy8891 56 -FDKKVRFWDFR---AEEKVRDIE 75 (203)
Q Consensus 56 -~D~~i~vwd~~---~~~~~~~~~ 75 (203)
-+..+..||+. +++.+....
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~d 120 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVN 120 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEec
Confidence 26789999998 776655443
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.89 E-value=0.076 Score=39.70 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=15.4
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891 105 DGAGTTIISGHFDKKVRFWDFRAEEKVRDI 134 (203)
Q Consensus 105 ~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~ 134 (203)
+++| .|..++.++.|..+|. +++.+..+
T Consensus 223 ~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 223 SEDG-TIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp CTTS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CCCC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence 3444 3555666777777763 44444443
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.87 E-value=0.089 Score=39.63 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=43.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC---------------------cCceEEEEeCCCCEEEEecCCCe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS---------------------SCNDLVTYDGAGTTIISGHFDKK 59 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~---------------------~~~~~~~~~~~~~~l~s~~~D~~ 59 (203)
++++.+++..++++..++.|..||..+.+.. +... .....+++.+++..|+.+...+.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~ 102 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH 102 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence 4677889888899999999999998765432 1100 01123556763345555555566
Q ss_pred EEEEECCCce
Q psy8891 60 VRFWDFRAEE 69 (203)
Q Consensus 60 i~vwd~~~~~ 69 (203)
|..+|...+.
T Consensus 103 i~~~d~~~g~ 112 (322)
T 2fp8_A 103 LSVVGSEGGH 112 (322)
T ss_dssp EEEECTTCEE
T ss_pred EEEEeCCCCE
Confidence 8888876543
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.76 E-value=0.19 Score=41.82 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCCeE--EecCc------------CceEEEEeCCCCE----EEEecCCCeEEEEECCCc
Q psy8891 9 PTKVVSGSC-DRTLKIWDL-RSTETK--FAGSS------------CNDLVTYDGAGTT----IISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 9 ~~~l~t~s~-D~~v~lwdl-~~~~~~--~~~~~------------~~~~~~~~~~~~~----l~s~~~D~~i~vwd~~~~ 68 (203)
+..++.++. ++.|.-+|. .+++.+ +.... ...-+.+.|.+.. |+.++.|+.+..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 899999999 787653 11100 0111334333334 888889999999999999
Q ss_pred eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee------CCCeEEEEECCCCceEEEEec
Q psy8891 69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH------FDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------~d~~i~iWd~~~~~~~~~~~~ 136 (203)
+.+........ .. ... .....++ . ++ .|+.++ .++.|+.+|.++|+.+..+..
T Consensus 142 ~~~W~~~~~~~------~~-~~~----~~ssP~v-~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 142 ETVWKVENSDI------KV-GST----LTIAPYV-V--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CEEEEEECCCG------GG-TCB----CCSCCEE-E--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEeecCCCC------Cc-cce----eecCCEE-E--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 98766543210 00 000 0000001 0 22 344443 378889999888888766654
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.73 E-value=0.013 Score=50.00 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=43.0
Q ss_pred ceEEc-CCCCEEEE-EeCC----CcEEEEeCCCC-CeEEec-CcCceEEEEeCCCCEEEEecCC-----CeEEEEECCCc
Q psy8891 2 CAKFL-GDPTKVVS-GSCD----RTLKIWDLRST-ETKFAG-SSCNDLVTYDGAGTTIISGHFD-----KKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~-~~~~~l~t-~s~D----~~v~lwdl~~~-~~~~~~-~~~~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~ 68 (203)
..+|| |||++|+- .+.+ .+|+++|+.++ +..... ......+.|+||++.|+....| ..|.++++.++
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 35789 99998764 3333 35999999887 521100 0011235789999877776665 36777888765
Q ss_pred e
Q psy8891 69 E 69 (203)
Q Consensus 69 ~ 69 (203)
+
T Consensus 258 ~ 258 (751)
T 2xe4_A 258 Q 258 (751)
T ss_dssp G
T ss_pred c
Confidence 3
No 259
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.37 E-value=0.24 Score=38.27 Aligned_cols=127 Identities=9% Similarity=0.193 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceE-E--EEeCCCC---E-EEEecC--CCeEEEEECCC-ceEEEeeee
Q psy8891 8 DPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDL-V--TYDGAGT---T-IISGHF--DKKVRFWDFRA-EEKVRDIEL 76 (203)
Q Consensus 8 ~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~-~--~~~~~~~---~-l~s~~~--D~~i~vwd~~~-~~~~~~~~~ 76 (203)
...+++.....+-+.+||+........ ....+.+ + .+.-.++ + ++|.-. +++|.+|++.. ...+..+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 345577777788999999954333222 1222221 1 1111222 2 333334 58999997742 222333311
Q ss_pred C-CeEEEEE-ecCCCceEEEecCCceEEEE-cCC-CC-EEEEeeCCCeEEEEECC-------CCceEEEEeccceEEEEE
Q psy8891 77 H-GKITSLD-LSKGTETKFAGSSCNDLVTY-DGA-GT-TIISGHFDKKVRFWDFR-------AEEKVRDIELHGKITSLD 144 (203)
Q Consensus 77 ~-~~v~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~-~l~s~s~d~~i~iWd~~-------~~~~~~~~~~~~~v~~~~ 144 (203)
- .++ .-. ..+.+ +..| ++. +. +++....++.+..|++. +++.++++.+.+++..+.
T Consensus 119 ~~~pv-~t~~~~pyG-----------lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcv 186 (355)
T 3amr_A 119 PDHPI-ATAINEVYG-----------FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMA 186 (355)
T ss_dssp TTSCE-ECCCSSCCC-----------EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEE
T ss_pred cccCc-CCCCCCeeE-----------EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEE
Confidence 0 011 000 11111 1122 343 33 57777888999999883 234456676666665544
Q ss_pred ec
Q psy8891 145 LS 146 (203)
Q Consensus 145 ~~ 146 (203)
+.
T Consensus 187 vD 188 (355)
T 3amr_A 187 AD 188 (355)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.93 E-value=0.31 Score=40.79 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=64.5
Q ss_pred ceEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCCeE----EecCc--CceEEEEeCCCCEEEEecC-CCeEEE
Q psy8891 2 CAKFLG-DPTKVVSGSCDR-----------TLKIWDLRSTETK----FAGSS--CNDLVTYDGAGTTIISGHF-DKKVRF 62 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~-----------~v~lwdl~~~~~~----~~~~~--~~~~~~~~~~~~~l~s~~~-D~~i~v 62 (203)
.+++.+ +++.++.|+.+. .+.+||+.+.+-. ..... ....+++..++..++.||. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 356677 888888888654 5889999875421 11111 1112445578889999985 458999
Q ss_pred EECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CC-----CeEEEEECCCCc
Q psy8891 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FD-----KKVRFWDFRAEE 129 (203)
Q Consensus 63 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d-----~~i~iWd~~~~~ 129 (203)
||..+.+-...-.... + ......+.-++|++++.|+ .+ ..+.+||..+++
T Consensus 270 yd~~t~~W~~~~~~~~--------~---------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQV--------A---------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSS--------C---------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCc--------c---------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9987664321110000 0 0001122234667777777 34 578889987653
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.75 E-value=0.43 Score=35.82 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=55.1
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEeCCCCCe-EEec----C--cCceEEEEeC-CCCEEEEecC-----------------C
Q psy8891 3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET-KFAG----S--SCNDLVTYDG-AGTTIISGHF-----------------D 57 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-~~~~----~--~~~~~~~~~~-~~~~l~s~~~-----------------D 57 (203)
+++.+++..|+.+...+.|..+|..++.. .... . ....-+.+++ +++..++-.. +
T Consensus 85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 56676334555555556688888765321 1111 0 1112355677 7765554322 2
Q ss_pred CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeEEEEECCC
Q psy8891 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDFRA 127 (203)
Q Consensus 58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~~~ 127 (203)
+.|..||...++...... ......-++++++|+.|+.+ ..++.|..+|+..
T Consensus 165 g~v~~~d~~~~~~~~~~~-------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceEEEEeCCCCEEEEecc-------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 556666655443221110 00111125677888766555 4568999999874
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.72 E-value=0.29 Score=41.76 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=42.1
Q ss_pred EEEEe-CCCCEEEEe-cC----CCeEEEEECCCc-eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEE
Q psy8891 41 LVTYD-GAGTTIISG-HF----DKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS 113 (203)
Q Consensus 41 ~~~~~-~~~~~l~s~-~~----D~~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 113 (203)
...++ ||++.|+-+ +. ..+|+++|+.++ +.+. ..+... . .-..|+|||+.|+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~~~~~~-~--------------~~~~WspDg~~l~y 237 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----DKVSGT-N--------------GEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----CCEEEE-C--------------SCCEECSSTTEEEE
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----ccccCc-e--------------eeEEEecCCCEEEE
Confidence 35789 999977643 22 236999999887 5321 111111 0 01458888887777
Q ss_pred eeCC-----CeEEEEECCCCc
Q psy8891 114 GHFD-----KKVRFWDFRAEE 129 (203)
Q Consensus 114 ~s~d-----~~i~iWd~~~~~ 129 (203)
...| ..|.++++.+++
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCG
T ss_pred EEECCCCCCCEEEEEECCCCc
Confidence 7665 257777776543
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.70 E-value=0.39 Score=34.94 Aligned_cols=114 Identities=8% Similarity=-0.011 Sum_probs=64.2
Q ss_pred ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCe-EEe-c-CcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEee
Q psy8891 2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTET-KFA-G-SSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDI 74 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~-~~~-~-~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~ 74 (203)
.++++|++..|+-+.. .+.|..+++..... ... . .....-++++++++.|+ +-...+.|.++|+........+
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence 3578887776665554 36788888865332 121 1 11223467888766654 4455679999998754322211
Q ss_pred eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEec
Q psy8891 75 ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~ 136 (203)
..-.....+ +. ++..|+.+. .++.|..+|..+++.+..+..
T Consensus 206 ~~~~~P~gi-------------------~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 206 EGLQYPFAV-------------------TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp ECCCSEEEE-------------------EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred cCCCCceEE-------------------EE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 110111111 11 223455454 457999999988877766643
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.63 E-value=0.62 Score=36.87 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=58.2
Q ss_pred ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCC-C----eEEEEECCCceEE--
Q psy8891 2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFD-K----KVRFWDFRAEEKV-- 71 (203)
Q Consensus 2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D-~----~i~vwd~~~~~~~-- 71 (203)
.++++| ++..|+.+...+.|+.+|+....... .......-++++++++.|+.+... + .+.+.+ ..+...
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~ 219 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVI 219 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeee
Confidence 467787 46667776666889999998754321 212222346788888866655542 2 222233 222211
Q ss_pred EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcC-CCCEEEEeeCCCeEEEEECCCCc
Q psy8891 72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE 129 (203)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~ 129 (203)
..+. .+ ....-+.++| +|.+.++-..++.|..+|...+.
T Consensus 220 ~~l~--------~~-----------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 220 TELT--------KG-----------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEE--------EC-----------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred eeec--------cC-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 1110 01 0111244677 56655555567889999987554
No 265
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.081 Score=40.71 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=70.1
Q ss_pred CEEEEecCCCeEEEEECCCceEEEeeeeC--CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeEEEEEC
Q psy8891 49 TTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDF 125 (203)
Q Consensus 49 ~~l~s~~~D~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~ 125 (203)
..|+.++.||.|.-.|..+++..+.+... .++.... .+. . ..++..++.. +.||.|..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~---------~------~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPS---------R------LETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSC---------T------TTSSEEEEECCSTTTEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCc---------c------ccCCcEEEEEECCCCEEEEEEC
Confidence 47888999999999999999988877543 1111100 000 0 0122223332 57999999998
Q ss_pred CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE----cCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV----VDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
.+|.....+.....+. .++ ... .+ ..+... ..+..+++|+.++.+.-.|+.+|+.+.++.
T Consensus 75 ~~G~~~~~~~~~~lv~---~SP--~~~---~~-------~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 75 HQGLQKLPLSIRQLVS---TSP--LHL---KT-------NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTEEEEEEEEHHHHHT---TCS--EEE---EC-------C----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred CCCcEEeeecccccee---ccc--ccc---CC-------CceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 8775443333321110 000 000 00 000000 145678899999999999999999988775
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.38 E-value=0.47 Score=35.27 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=32.3
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891 110 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189 (203)
Q Consensus 110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd 189 (203)
.|+.++.++.|..+|. +++....+...... +......++ ..|..|+.+|.+++..
T Consensus 267 ~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~-----------------------~~~~~~d~~-g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINP-DGTEKWNFETGSWI-----------------------IATPVIDEN-GTIYFGTRNGKFYALF 321 (330)
T ss_dssp CEEEECTTCEEEEECT-TSCEEEEEECSSCC-----------------------CSCCEECTT-CCEEEECTTSCEEEEE
T ss_pred eEEEecCCCCEEEECC-CCcEEEEEEcCCcc-----------------------ccceEEcCC-CEEEEEcCCCeEEEEe
Confidence 4666677778888885 55554444322110 001112233 4566789999999988
Q ss_pred CCCce
Q psy8891 190 CNTEQ 194 (203)
Q Consensus 190 ~~~~~ 194 (203)
....+
T Consensus 322 ~~~~~ 326 (330)
T 3hxj_A 322 NLEHH 326 (330)
T ss_dssp C----
T ss_pred ccccc
Confidence 76543
No 267
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.31 E-value=0.71 Score=35.46 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891 17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS 96 (203)
Q Consensus 17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (203)
.+.+|-+-|+..+.......-..+..-..|..+.++--. ..++.|+|+++.+.++.....+.|.-+.|-.+
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-------- 117 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-------- 117 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--------
T ss_pred CCCEEEEEECCCCCCccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC--------
Confidence 344788889877443222111122234567666665554 68999999999999988887777766655432
Q ss_pred CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc
Q psy8891 97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH 137 (203)
Q Consensus 97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~ 137 (203)
+.|+-.+ +..|.-|++.. ..+.+.+.-+
T Consensus 118 ------------~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 118 ------------NTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp ------------SEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred ------------CeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 2444444 46899999863 4566666654
No 268
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.67 E-value=1.1 Score=34.39 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=66.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEe-C----CCCEEEEe-cCCCeEEEEECCCceEEEeeeeCCeEE
Q psy8891 10 TKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYD-G----AGTTIISG-HFDKKVRFWDFRAEEKVRDIELHGKIT 81 (203)
Q Consensus 10 ~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~-~----~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~~~~~v~ 81 (203)
..++.++.||.|.-.|..+++.+ +........+... + ++..++-. ..||.+..+|..++.....+.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999887643 2221001112111 1 22333333 689999999988875544333211110
Q ss_pred EEEecCCCceEEEecCCceEEEEcC----CCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891 82 SLDLSKGTETKFAGSSCNDLVTYDG----AGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~ 137 (203)
.+| ....+. .+..++ .+..++++++++++...|+++|+.+.++...
T Consensus 91 ---~SP---~~~~~~----pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 ---TSP---LHLKTN----IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp ---TCS---EEEECC--------------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ---ccc---cccCCC----ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 000 000000 000000 2347899999999999999999999888654
No 269
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.45 E-value=1.5 Score=35.07 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891 17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS 96 (203)
Q Consensus 17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (203)
.+.+|-+-|+..+.......-..+..-..|..+.++--. ..++.|+|+++.+.++.......|.-+.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-------- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-------- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--------
T ss_pred CCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--------
Confidence 344788888876443221111122234566666555444 78999999999998888776665544433221
Q ss_pred CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc
Q psy8891 97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH 137 (203)
Q Consensus 97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~ 137 (203)
+.|+-.+ +..|.-|++.. ..+.+.+.-+
T Consensus 117 ------------~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 117 ------------NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp ------------TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred ------------CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 2454444 56899999863 3566666654
No 270
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.78 E-value=1.8 Score=33.41 Aligned_cols=90 Identities=11% Similarity=0.211 Sum_probs=50.9
Q ss_pred CCcEEEEeCC--CCCeEEec----------CcCceEEEE-eCC-CC-EEEEecCCCeEEEEECCC-------ceEEEeee
Q psy8891 18 DRTLKIWDLR--STETKFAG----------SSCNDLVTY-DGA-GT-TIISGHFDKKVRFWDFRA-------EEKVRDIE 75 (203)
Q Consensus 18 D~~v~lwdl~--~~~~~~~~----------~~~~~~~~~-~~~-~~-~l~s~~~D~~i~vwd~~~-------~~~~~~~~ 75 (203)
+++|++|++. +.+..... .....++.+ ++. +. +++....++.+..|++.. .+.++++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5889999773 33322111 111222332 453 33 688888899999999832 23344444
Q ss_pred eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891 76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126 (203)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~ 126 (203)
..+++.. +..++....|+.+-.|.-|..+|.+
T Consensus 178 lgsq~Eg-------------------cvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 178 MNSQTEG-------------------MAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CSSCEEE-------------------EEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCCCcce-------------------EEEcCCCCeEEEecccceEEEEeCC
Confidence 4433332 2345556688888888665555643
No 271
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.58 E-value=2.3 Score=35.95 Aligned_cols=68 Identities=9% Similarity=-0.027 Sum_probs=37.7
Q ss_pred ceEEcCCCCEEEEE-eCCCcEEEEeCCC----CCe--EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce
Q psy8891 2 CAKFLGDPTKVVSG-SCDRTLKIWDLRS----TET--KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 2 ~~~~~~~~~~l~t~-s~D~~v~lwdl~~----~~~--~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~ 69 (203)
.++|.+++..|+-+ ...+.|+.+++.+ ... ... .......+++++.+. +.++-...+.|.+.++....
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 46778766666554 4567899998874 111 111 111112245554333 44454567789999886543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.13 E-value=2 Score=31.92 Aligned_cols=69 Identities=9% Similarity=-0.073 Sum_probs=42.9
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEEEeCCCCEEEEecCC-C-eEEEEECCCceE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVTYDGAGTTIISGHFD-K-KVRFWDFRAEEK 70 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~D-~-~i~vwd~~~~~~ 70 (203)
.+++.+++..+++-..++.|..||........ ........+++.++++.+++.... + .|..+|..+++.
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 46788999877777688999999987643221 112222335678888865554332 2 466667666654
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.50 E-value=4.3 Score=32.08 Aligned_cols=130 Identities=11% Similarity=0.064 Sum_probs=69.8
Q ss_pred EEEEeCC--CCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCC----ceE-------------
Q psy8891 41 LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSC----NDL------------- 101 (203)
Q Consensus 41 ~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~------------- 101 (203)
.++++++ +..|+.+...+.|+.+|+..+........-.....+++.+++...++.... ..+
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~ 222 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL 222 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc
Confidence 3567773 456666555589999998777655443333456778888877632222110 001
Q ss_pred ----------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE
Q psy8891 102 ----------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV 170 (203)
Q Consensus 102 ----------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
+++++ +|.+.++-..++.|+.+|..++.....+.... .. . ....++++
T Consensus 223 ~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------~~--------~-----~~~~ia~d 281 (433)
T 4hw6_A 223 SLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD--------TK--------G-----SNFHIVWH 281 (433)
T ss_dssp EEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--------CC--------S-----SCEEEEEC
T ss_pred cccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--------CC--------C-----CcccEEEe
Confidence 23455 44444444455667777766554322111000 00 0 00135677
Q ss_pred cCCC-EEEEecCCCcEEEEeCC
Q psy8891 171 VDDD-YVAVGSIDGNIYVWDCN 191 (203)
Q Consensus 171 ~~~~-~l~s~s~d~~v~~wd~~ 191 (203)
|+++ ++++-...+.|+.++.+
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCEEEEEeCCCCEEEEEeCC
Confidence 8887 45555667888887765
No 274
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.11 E-value=4.9 Score=32.01 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=61.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCC-eE-EecC---c--CceEEEEeCCCCEEEEecCCCeEEEEECCCceE---------
Q psy8891 7 GDPTKVVSGSCDRTLKIWDLRSTE-TK-FAGS---S--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--------- 70 (203)
Q Consensus 7 ~~~~~l~t~s~D~~v~lwdl~~~~-~~-~~~~---~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~--------- 70 (203)
.+|..++.+- ++.||.-++.... .+ .... . ....+..+|+|++|+-.+ +..|.|-.+..+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 4666676664 5888888886322 11 1111 1 123366789998888764 45788888763221
Q ss_pred ---EEeeee-------CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891 71 ---VRDIEL-------HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127 (203)
Q Consensus 71 ---~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~ 127 (203)
.+++.. ..+|..+-|+|-+. .+..|++-..|++||+||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~----------------~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSY----------------RDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBG----------------GGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccC----------------CCCeEEEEecCCEEEEEEccc
Confidence 111111 23355555555322 356889999999999999985
No 275
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.33 E-value=7.1 Score=31.10 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=43.0
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------------E-Eec-------CcCceEEEEeC---CCCEEEEecCCC
Q psy8891 3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET-------------K-FAG-------SSCNDLVTYDG---AGTTIISGHFDK 58 (203)
Q Consensus 3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------------~-~~~-------~~~~~~~~~~~---~~~~l~s~~~D~ 58 (203)
+-.+|+|+.||-.+ +.+|.+-.+..+.. . +.. .....-+.|.| .+..|+.--.|+
T Consensus 71 lvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~ 149 (452)
T 3pbp_A 71 VISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD 149 (452)
T ss_dssp EEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred EEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence 34689999888775 57999999873210 0 111 11123345666 456899999999
Q ss_pred eEEEEECCC
Q psy8891 59 KVRFWDFRA 67 (203)
Q Consensus 59 ~i~vwd~~~ 67 (203)
+||+||+..
T Consensus 150 ~Ir~yDl~~ 158 (452)
T 3pbp_A 150 TITMFDILN 158 (452)
T ss_dssp CEEEEETTC
T ss_pred EEEEEEccc
Confidence 999999975
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.11 E-value=2.6 Score=37.12 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 102 ~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
....++..++++.+.|+++|+|++.+++++.+..+
T Consensus 241 ~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 241 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp EEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred EeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 34556778999999999999999999998877654
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=89.08 E-value=5.2 Score=29.25 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=43.7
Q ss_pred eEEcCCCCEEEE-EeCCCcEEEEeCCCCCeEE----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce
Q psy8891 3 AKFLGDPTKVVS-GSCDRTLKIWDLRSTETKF----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 3 ~~~~~~~~~l~t-~s~D~~v~lwdl~~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~ 69 (203)
++|.|++..|++ ...++.|...|+. ++... .+.....-+++.+++.++++.-.++.+.++++....
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 577888777665 6667888888887 44321 111223446677777777776677889999886544
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=88.39 E-value=6.6 Score=29.54 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=38.8
Q ss_pred ceEEcCCCCE-EEEEeCCCcEEEEeCCCCC---eEE-ecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCc
Q psy8891 2 CAKFLGDPTK-VVSGSCDRTLKIWDLRSTE---TKF-AGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~-l~t~s~D~~v~lwdl~~~~---~~~-~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~ 68 (203)
++.|.+.+.. .++-...+.|..+++.... ... .......-+++++.+. +.++-...+.|.++++...
T Consensus 39 ~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 39 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 4567765444 4455567788888887642 121 1111223356676444 4455556778999998654
No 279
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.61 E-value=2 Score=38.59 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=28.7
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 103 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 103 ~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
...++..++++.+.|+++|+||+.+++++.+..+
T Consensus 244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp EEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3456678999999999999999999999887654
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=87.36 E-value=8.6 Score=29.71 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=38.6
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCc
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAE 68 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~ 68 (203)
.++|.+.+..| ++-...+.|..+++....... . ......-+++++.+..| ++-...+.|.+.++...
T Consensus 120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 36677655554 455567888888887654321 1 11111235667654444 55555678888887644
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=86.69 E-value=11 Score=30.44 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=32.8
Q ss_pred eEEcC-CCCEEEEEeC-CCcEEEEeCCCCCeEE--ecCc----CceEEEE-------eCCCCEEEEecCCC
Q psy8891 3 AKFLG-DPTKVVSGSC-DRTLKIWDLRSTETKF--AGSS----CNDLVTY-------DGAGTTIISGHFDK 58 (203)
Q Consensus 3 ~~~~~-~~~~l~t~s~-D~~v~lwdl~~~~~~~--~~~~----~~~~~~~-------~~~~~~l~s~~~D~ 58 (203)
++|.| +...|+.+.. .+.|++.|+....... .... ....+++ +++++.|+.+.+.+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 56787 3555555544 4678888988755432 1111 1234667 88888666665554
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=86.53 E-value=10 Score=29.80 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=46.3
Q ss_pred ceEEcCCCCEEEEEeC-CC----cEEEEeCCCCC----eEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEE
Q psy8891 2 CAKFLGDPTKVVSGSC-DR----TLKIWDLRSTE----TKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKV 71 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~-D~----~v~lwdl~~~~----~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~ 71 (203)
.++|+++++.|+.+.. ++ .+...+..... .......+ ..++++| ++.+.++-..++.|..+|...+...
T Consensus 183 ~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p-~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 183 TICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNC-NGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp EEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSC-CCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 4678899996665554 22 23333332211 11111222 2356778 5666666667789999998766542
Q ss_pred Eeeee--CCeEEEEEecCCCce
Q psy8891 72 RDIEL--HGKITSLDLSKGTET 91 (203)
Q Consensus 72 ~~~~~--~~~v~~~~~~~~~~~ 91 (203)
..... ......+++++++..
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSE
T ss_pred EEEEcCCCCcceeEEEcCCCCE
Confidence 22111 122455666666553
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.02 E-value=1.4 Score=38.80 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.9
Q ss_pred EEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 166 RAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 166 ~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
.....++..++++-+.|+++|+|++.+++++.+.
T Consensus 240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3445567789999999999999999999999875
No 284
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.75 E-value=8.8 Score=28.29 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--C
Q psy8891 41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD--K 118 (203)
Q Consensus 41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--~ 118 (203)
-++++++++.+++-..++.|..||.... ....+...+....+ .++++|+.+++.... .
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gi-------------------a~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGL-------------------AFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEE-------------------EECTTSCEEEEEECTTSC
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeE-------------------EEcCCCcEEEEeccCCcc
Confidence 3677888887777667889999987653 22222222333333 345566644443322 2
Q ss_pred eEEEEECCCCce
Q psy8891 119 KVRFWDFRAEEK 130 (203)
Q Consensus 119 ~i~iWd~~~~~~ 130 (203)
.|..+|..+++.
T Consensus 96 ~v~~~d~~~g~~ 107 (306)
T 2p4o_A 96 PVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECTTSCE
T ss_pred eEEEEcCCCCeE
Confidence 466667666654
No 285
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.37 E-value=4.1 Score=37.66 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=55.9
Q ss_pred CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891 17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS 96 (203)
Q Consensus 17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (203)
...+|-+-|+..+......+-..+..-..|..+.++--. ..++.|+|+.+.+.++.......|.-+.|-..
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-------- 116 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-------- 116 (1630)
T ss_pred CCceEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC--------
Confidence 344677888876443221111112223456555555443 78999999999888777766666655544322
Q ss_pred CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEe
Q psy8891 97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIE 135 (203)
Q Consensus 97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~ 135 (203)
+.|+-++ +..|.-|++.. ..|.+.+.
T Consensus 117 ------------~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 117 ------------NTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred ------------CeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 2344443 46899999963 23444443
No 286
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=85.23 E-value=1.4 Score=37.45 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.6
Q ss_pred EcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 170 VVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 170 ~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
..+..++++-+.|.++|+|++++++++.+.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 346789999999999999999999998875
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=83.12 E-value=15 Score=28.89 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred eEEcC-CCCEEEEEeCCCcEEEEeCCCCCe---EEecC--cCceEEEEeCCCCEE-EEecCCCeEEEEECC
Q psy8891 3 AKFLG-DPTKVVSGSCDRTLKIWDLRSTET---KFAGS--SCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR 66 (203)
Q Consensus 3 ~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~--~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~ 66 (203)
+++.| ++...++-..++.|+.+|..++.. ..... ....-++++|+++.| ++-...+.|+.+|+.
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 56778 555555655678899999875543 11111 112237889999855 444566899998865
No 288
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=82.48 E-value=2.3 Score=36.10 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=28.5
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891 103 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136 (203)
Q Consensus 103 ~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~ 136 (203)
+...+..++++.+.|+++|+||+.+++++.+..+
T Consensus 226 ~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 226 CKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3344567999999999999999999998877665
No 289
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.39 E-value=1.6 Score=39.08 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.9
Q ss_pred EEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199 (203)
Q Consensus 168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~ 199 (203)
+..++..++++-+.|+++|+|++.+++++.+.
T Consensus 244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34467789999999999999999999999875
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=81.82 E-value=16 Score=28.32 Aligned_cols=87 Identities=9% Similarity=-0.030 Sum_probs=45.1
Q ss_pred ceEEcCCCCEEE-EEeCCCcEEEEeCCCC-----Ce-EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDPTKVV-SGSCDRTLKIWDLRST-----ET-KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~-----~~-~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~ 72 (203)
.++|.+.+..|+ +-...+.|+.+++... .. ... .......+++++.+. +.++-...+.|.+.|+.......
T Consensus 116 ~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~ 195 (400)
T 3p5b_L 116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 195 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE
T ss_pred EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE
Confidence 467777665554 4445678888888652 11 111 111223456776444 44455567789888886554332
Q ss_pred eeee-CCeEEEEEecCC
Q psy8891 73 DIEL-HGKITSLDLSKG 88 (203)
Q Consensus 73 ~~~~-~~~v~~~~~~~~ 88 (203)
.+.. -.....+++.|.
T Consensus 196 l~~~~~~~P~~iavdp~ 212 (400)
T 3p5b_L 196 LFRENGSKPRAIVVDPV 212 (400)
T ss_dssp EEECSSCCEEEEEEETT
T ss_pred EEeCCCCCcceEEEecc
Confidence 2221 123455555553
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=80.44 E-value=15 Score=26.86 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=75.9
Q ss_pred eEEEEeCCCCEEEE-ecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC
Q psy8891 40 DLVTYDGAGTTIIS-GHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116 (203)
Q Consensus 40 ~~~~~~~~~~~l~s-~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 116 (203)
.-+++.|+++.|++ ...++.|...|+. ++.++.+...+ ..-.++ +.+++.++++.-.
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-------------------~~~~g~~~vs~E~ 89 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-------------------YIGDNQFVISDER 89 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-------------------ECSTTEEEEEETT
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-------------------EeCCCEEEEEECC
Confidence 34678887776655 5678889899987 77666654322 223333 3344444454445
Q ss_pred CCeEEEEECCCCce---EEEEecc-------ceEEEEEecCCc-EEEEeec-Ce---------------eE---------
Q psy8891 117 DKKVRFWDFRAEEK---VRDIELH-------GKITSLDLSKGK-YYFVFAE-GF---------------KV--------- 160 (203)
Q Consensus 117 d~~i~iWd~~~~~~---~~~~~~~-------~~v~~~~~~~~~-~~~~~~~-~~---------------~~--------- 160 (203)
++.+.++++..... .....+. .....+++.+.. .+++..+ .. .+
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence 56666666654332 1222211 113566665442 2222211 11 00
Q ss_pred --EeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891 161 --QCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 161 --~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~ 200 (203)
..++..+.+.|.. .+++.....+.+..+|.. |+++..++
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~ 211 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS 211 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence 1133456677764 456667778889999976 66776653
No 292
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=78.50 E-value=20 Score=27.21 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=46.5
Q ss_pred ceEEcCCCCEEE-EEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCE-EEEecCCCeEEEEECCCceEEEeeee
Q psy8891 2 CAKFLGDPTKVV-SGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~-l~s~~~D~~i~vwd~~~~~~~~~~~~ 76 (203)
.++|.+.+..|+ +-...+.|..+++...... .. ......-+++++.+.. .++-...+.|.+.++........+..
T Consensus 77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~ 156 (349)
T 3v64_C 77 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ 156 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC
Confidence 356776555554 4456788888888764422 11 1111234567765444 45555677899998865432222211
Q ss_pred C-CeEEEEEecC
Q psy8891 77 H-GKITSLDLSK 87 (203)
Q Consensus 77 ~-~~v~~~~~~~ 87 (203)
. .....+++.|
T Consensus 157 ~l~~P~~iavdp 168 (349)
T 3v64_C 157 SLEKPRAIALHP 168 (349)
T ss_dssp TCSCEEEEEEET
T ss_pred CCCCcceEEEec
Confidence 1 2345555555
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=78.33 E-value=18 Score=26.83 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=45.1
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCCC----CC-e-EEe-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLRS----TE-T-KFA-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~----~~-~-~~~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~ 72 (203)
.++|.+++..| ++-...+.|..+|+.+ .. . ... .......+++++.+..| ++-...+.|.+.|+.......
T Consensus 34 g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 113 (316)
T 1ijq_A 34 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 113 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE
Confidence 46777766555 4555568899999875 22 1 121 11122345667644544 454667899999986543322
Q ss_pred eeee-CCeEEEEEecC
Q psy8891 73 DIEL-HGKITSLDLSK 87 (203)
Q Consensus 73 ~~~~-~~~v~~~~~~~ 87 (203)
.+.. -.....+++.|
T Consensus 114 ~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 114 LFRENGSKPRAIVVDP 129 (316)
T ss_dssp EEECTTCCEEEEEEET
T ss_pred EEECCCCCcceEEeCC
Confidence 2221 12345555554
No 294
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=73.59 E-value=32 Score=28.58 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=44.0
Q ss_pred ceEEcCCCCEEEE-EeCCCcEEEEeCCCC------Ce------EEecCc--C-ceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVS-GSCDRTLKIWDLRST------ET------KFAGSS--C-NDLVTYDGAGTTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t-~s~D~~v~lwdl~~~------~~------~~~~~~--~-~~~~~~~~~~~~l~s~~~D~~i~vwd~ 65 (203)
.|+.+|||++++. |--+.+|.++|++.. +. ...... . ..-..|+++|+...|.-.|..|--|++
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence 3788999998765 556999999998731 11 111100 0 112468888866666679999999998
Q ss_pred CC
Q psy8891 66 RA 67 (203)
Q Consensus 66 ~~ 67 (203)
..
T Consensus 407 ~~ 408 (638)
T 3sbq_A 407 EE 408 (638)
T ss_dssp HH
T ss_pred cH
Confidence 64
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=73.03 E-value=27 Score=29.52 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=33.5
Q ss_pred eEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEec---CcCceEEEEeCCCCEEEEecCC--CeEEEEECCC
Q psy8891 3 AKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHFD--KKVRFWDFRA 67 (203)
Q Consensus 3 ~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D--~~i~vwd~~~ 67 (203)
+++.+.+. ..++-...+.|.+.++......... ......++++|.+..|+-+.+. +.|.+.++..
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 34444333 3445455678888888764432211 1111235566655555544432 5677776643
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=73.02 E-value=45 Score=28.72 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=45.4
Q ss_pred ceEEcCCCCEE-EEEeCCCcEEEEeCCCC----C-e-EEe-cCcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEE
Q psy8891 2 CAKFLGDPTKV-VSGSCDRTLKIWDLRST----E-T-KFA-GSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVR 72 (203)
Q Consensus 2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~----~-~-~~~-~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~ 72 (203)
.++|.+.+..| ++-...+.|+.+++... . . ... .......+++++.++.|+ +-...+.|.+.++.......
T Consensus 428 gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~ 507 (791)
T 3m0c_C 428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 507 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE
T ss_pred EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEE
Confidence 35666654444 45555677888888642 1 1 111 111223467777665444 44567899999987544322
Q ss_pred eeeeC-CeEEEEEecCC
Q psy8891 73 DIELH-GKITSLDLSKG 88 (203)
Q Consensus 73 ~~~~~-~~v~~~~~~~~ 88 (203)
.+... .....+++.+.
T Consensus 508 l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPV 524 (791)
T ss_dssp EEECTTCCEEEEEEETT
T ss_pred EEeCCCCCcceEEEecC
Confidence 22211 23556666554
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.48 E-value=29 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=21.6
Q ss_pred eEEEEeCCCCEEEEe-cCCCeEEEEECCC
Q psy8891 40 DLVTYDGAGTTIISG-HFDKKVRFWDFRA 67 (203)
Q Consensus 40 ~~~~~~~~~~~l~s~-~~D~~i~vwd~~~ 67 (203)
.-++++|+++.|+.+ +..+.|..||+..
T Consensus 224 NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 224 NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 447889999876655 4678999999864
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=71.42 E-value=59 Score=29.40 Aligned_cols=74 Identities=14% Similarity=0.289 Sum_probs=46.8
Q ss_pred CEEEEecCCCeEEEEECCCceE--EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEEC
Q psy8891 49 TTIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDF 125 (203)
Q Consensus 49 ~~l~s~~~D~~i~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~ 125 (203)
..++.++ ++.+.++.+..++. ........+|.++++.+.... ...+..++.|.+ |++|+|+++
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~-------------~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDS-------------NGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSS-------------TTCCSEEEEEETTTTEEEEEET
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCC-------------cccccEEEEEECCCCEEEEEEC
Confidence 4555544 67888888765432 233344567888887652110 012468888988 999999999
Q ss_pred CCCceEEEEec
Q psy8891 126 RAEEKVRDIEL 136 (203)
Q Consensus 126 ~~~~~~~~~~~ 136 (203)
..-+.+....+
T Consensus 590 ~~l~~~~~~~L 600 (1158)
T 3ei3_A 590 PSFELLHKEML 600 (1158)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCCeEEEEEC
Confidence 87666554444
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=69.00 E-value=31 Score=25.15 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=35.7
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCCeEE-ec-C--cCceEEEEeCCCCEEEEecCC------CeEEEEECCCce
Q psy8891 7 GDPTKVVSGSCD----RTLKIWDLRSTETKF-AG-S--SCNDLVTYDGAGTTIISGHFD------KKVRFWDFRAEE 69 (203)
Q Consensus 7 ~~~~~l~t~s~D----~~v~lwdl~~~~~~~-~~-~--~~~~~~~~~~~~~~l~s~~~D------~~i~vwd~~~~~ 69 (203)
.++..++.|+.+ ..+.+||+.+.+-.. .. . .....++. -++..++.||.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 366677777765 667888887654221 11 1 11111222 255677778765 468888887664
No 300
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=67.57 E-value=36 Score=25.42 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=20.1
Q ss_pred cCCCEEEEecCCC------cEEEEeCCCceeeeeecc
Q psy8891 171 VDDDYVAVGSIDG------NIYVWDCNTEQVEAVLKD 201 (203)
Q Consensus 171 ~~~~~l~s~s~d~------~v~~wd~~~~~~~~~~~~ 201 (203)
.+++.++.|+.++ .|.++++++++.+...+.
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 4677788887653 366678988888876643
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=62.70 E-value=51 Score=25.43 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=46.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc-eEEEeeeeC-----
Q psy8891 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE-EKVRDIELH----- 77 (203)
Q Consensus 5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~-~~~~~~~~~----- 77 (203)
-+|..+.++-=+ ..++.++|+++.+......-..+++.|.+ +.+.|+=- .+..|.-|++... ++.+.+.-|
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAG 151 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEE-ESSEEEEEESSTTCCCEEEEECCGGGTT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEE-cCCcEEEEcccCCCCCceeeecchhccc
Confidence 367777666544 68999999998654433333345555543 23332211 2578999998643 333333322
Q ss_pred CeEEEEEecCCCc
Q psy8891 78 GKITSLDLSKGTE 90 (203)
Q Consensus 78 ~~v~~~~~~~~~~ 90 (203)
.+|......++..
T Consensus 152 ~QIInY~~d~~~k 164 (365)
T 2xzh_A 152 CQIINYRTDAKQK 164 (365)
T ss_dssp CEEEEEEECTTSC
T ss_pred ceEEEEEECCCCC
Confidence 2344444444443
No 302
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=57.81 E-value=86 Score=26.49 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=32.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCeEE-e---cCcCceE--EEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 11 KVVSGSCDRTLKIWDLRSTETKF-A---GSSCNDL--VTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 11 ~l~t~s~D~~v~lwdl~~~~~~~-~---~~~~~~~--~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
.|..|..++-|..||..+..... . ......+ +..++++ .|..|..++-+..+|.++++.
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-NLWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-CEEEEETTEEEEEECSSSCEE
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-CEEEEeccCCEEEEcCCCCcE
Confidence 45566666678888876432211 0 1111222 2334444 455567777788888776653
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.24 E-value=54 Score=23.67 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=35.0
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCC---eEEecC----cCceEEEEeCCCCEEEEecCC-----CeEEEEECCCce
Q psy8891 7 GDPTKVVSGSCD-----RTLKIWDLRSTE---TKFAGS----SCNDLVTYDGAGTTIISGHFD-----KKVRFWDFRAEE 69 (203)
Q Consensus 7 ~~~~~l~t~s~D-----~~v~lwdl~~~~---~~~~~~----~~~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~~ 69 (203)
.+++.++.|+.+ ..+.+||+.+.+ -..... .....++. .++..++.||.+ ..+.+||+.+.+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 356677777765 468889987755 221111 11111222 245677777654 357788877654
No 304
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=52.48 E-value=63 Score=23.29 Aligned_cols=60 Identities=7% Similarity=-0.079 Sum_probs=33.8
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--------EEec--CcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--------KFAG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--------~~~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~ 65 (203)
.++|+|+|. |+.. .+|.+.--+..+... .... -..-..+.+++++.+-++ .||.|.-++-
T Consensus 45 ~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 45 FLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp EEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred eEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 478999887 4444 667655555433111 1100 001145678898876666 5588876664
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=49.97 E-value=70 Score=23.10 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecCC-------CeEEEEECCCce
Q psy8891 8 DPTKVVSGSCDR-----TLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHFD-------KKVRFWDFRAEE 69 (203)
Q Consensus 8 ~~~~l~t~s~D~-----~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~D-------~~i~vwd~~~~~ 69 (203)
+++.++.|+.++ .+.+||+.+.+-.... ......++. -++...+.||.+ ..+.+||+.+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 566777777664 4677888764422111 111111111 245666666653 347788877654
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=48.35 E-value=40 Score=25.90 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=33.2
Q ss_pred ceEEcCCCCEEEEE-eCCCcEEEEeCCC-CCe----EEecCcCceEEEEeC-CCCEEEEecCC
Q psy8891 2 CAKFLGDPTKVVSG-SCDRTLKIWDLRS-TET----KFAGSSCNDLVTYDG-AGTTIISGHFD 57 (203)
Q Consensus 2 ~~~~~~~~~~l~t~-s~D~~v~lwdl~~-~~~----~~~~~~~~~~~~~~~-~~~~l~s~~~D 57 (203)
.++|+||++.|+.+ +..+.|..||+.. ++. .+......+-+++++ +|++.+++..+
T Consensus 225 Gia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred cceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence 47899999877654 4578899999864 221 111111123355666 46666655544
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=47.95 E-value=87 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=18.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEe
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWD 25 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwd 25 (203)
.++|.|||+.+++ ..++.|++++
T Consensus 35 ~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 35 ALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp EEEECTTSCEEEE-ETTTEEEEEE
T ss_pred EEEEcCCCeEEEE-eCCCeEEEEE
Confidence 4688999985555 5669999998
No 308
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=45.72 E-value=1.4e+02 Score=25.25 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCeEEecC---cCceE--EEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 7 GDPTKVVSGSCDRTLKIWDLRSTETKFAGS---SCNDL--VTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~---~~~~~--~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
+++. |..|..++-+..+|..+.+...... ....+ +..++++. |.-|.. +-+..+|..+++.
T Consensus 416 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 416 SEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp TTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSC
T ss_pred CCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeE
Confidence 3444 5556666778888876654322111 11222 33445554 444444 5688898876543
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=45.48 E-value=1.2e+02 Score=24.51 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=34.1
Q ss_pred cCCCCEEEEEeCCC-------cEEEEeCCC-CC--------eEEecCcCceEEEEeCC-CCEEEEecCCCeEEEEECC
Q psy8891 6 LGDPTKVVSGSCDR-------TLKIWDLRS-TE--------TKFAGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFR 66 (203)
Q Consensus 6 ~~~~~~l~t~s~D~-------~v~lwdl~~-~~--------~~~~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~ 66 (203)
++++..|+.+...+ .|.+.+... +. .......+. .++.+|+ +.+.++-..++.|..+|+.
T Consensus 201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 89998666666554 255555332 11 111112222 2456774 4455566677889999987
No 310
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=45.03 E-value=1.4e+02 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=36.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-------cCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-------SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
.+++..|..|..++-|..||..+++...... .....+..+++++..+.. . +-+.+||..+++.
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSF 483 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEE
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeE
Confidence 4556546777777789999988765432111 111223445566554443 4 4588899877654
No 311
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=44.50 E-value=1.3e+02 Score=24.82 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=38.8
Q ss_pred ceEEcCCCCEEEEE-eCCCcEEEEeCCCCC---eEEecC-cCceEEEEeCCCCEEE-EecCCCeEEEEECCCce
Q psy8891 2 CAKFLGDPTKVVSG-SCDRTLKIWDLRSTE---TKFAGS-SCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 2 ~~~~~~~~~~l~t~-s~D~~v~lwdl~~~~---~~~~~~-~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~ 69 (203)
.++|++.+..|+-+ ...+.|+.+++.... ...... ....-+++++.++.|+ +-...+.|.+.++....
T Consensus 44 ~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 44 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 46778766665544 446778888887542 122111 2234467787555554 44567899999986543
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=42.89 E-value=1.1e+02 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.0
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDL 26 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl 26 (203)
.++|.|||+.+++ ..++.|+++|.
T Consensus 33 ~ia~~pdG~l~V~-e~~g~I~~~d~ 56 (354)
T 3a9g_A 33 SIAPLGGGRYLVT-ERPGRLVLISP 56 (354)
T ss_dssp EEEEEETTEEEEE-ETTTEEEEECS
T ss_pred EEEEcCCCeEEEE-eCCCEEEEEeC
Confidence 4688999885555 56699999874
No 313
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=37.17 E-value=1.2e+02 Score=22.32 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=30.2
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-eEEecC--cCceEEEEeCCCCEEEEecCCCeEEEEE
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-TKFAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWD 64 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd 64 (203)
.+.+.+++..++.+...+..+.+|-.... ...... .....+.+.+++..+ .++.+|.+++.+
T Consensus 167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEec
Confidence 35677887777666544444444431111 111111 111223456666544 445678777764
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=34.20 E-value=2e+02 Score=23.84 Aligned_cols=65 Identities=6% Similarity=-0.026 Sum_probs=32.9
Q ss_pred eEEcCCCCEE-EEEeCCCcEEEEeCCCCCe--EE-ecCcCceEEEEeCCCCEEEEecC--CCeEEEEECCC
Q psy8891 3 AKFLGDPTKV-VSGSCDRTLKIWDLRSTET--KF-AGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRA 67 (203)
Q Consensus 3 ~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~--~~-~~~~~~~~~~~~~~~~~l~s~~~--D~~i~vwd~~~ 67 (203)
+++.+.+..| ++-...+.|.+.++..... .. ........++++|....|+-..+ .+.|...++..
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG 155 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG 155 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence 3455444444 4444567788888765332 21 11111233566765555655543 34566666543
No 315
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=30.67 E-value=2.4e+02 Score=23.76 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCeEEec---------CcCc--eEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891 6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAG---------SSCN--DLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 70 (203)
Q Consensus 6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---------~~~~--~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~ 70 (203)
.++|. |..|..++-|..||..+.+..... .... ..+..+++++.|..|..++-+..||.++++.
T Consensus 365 d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 365 DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp CTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 34443 566777778999998765432111 0112 2234456666477777878899999887654
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=28.81 E-value=1.7e+02 Score=21.19 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=32.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCeEEec----CcC-ceEEEEeCCCCEEEEecCC-----CeEEEEECCCce
Q psy8891 8 DPTKVVSGSCD-----RTLKIWDLRSTETKFAG----SSC-NDLVTYDGAGTTIISGHFD-----KKVRFWDFRAEE 69 (203)
Q Consensus 8 ~~~~l~t~s~D-----~~v~lwdl~~~~~~~~~----~~~-~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~~ 69 (203)
+++.++.|+.+ ..+.+||+.+.+-.... ... ...+.+ ++...+.||.+ ..+.+||+.+.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 56666666644 35778888764422111 111 112222 45677777765 457788876654
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=27.23 E-value=4.1e+02 Score=25.24 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=33.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCC
Q psy8891 6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~ 67 (203)
+|..+.++-=+ ..++.++|+++........-...++.|.+ +++.|+= =.+..|..|++..
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l-VT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL-VTDNAVYHWSMEG 134 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE-EcCCeEEEeccCC
Confidence 56666555443 68999999987443322222234455543 2232221 1367899999964
No 318
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=26.32 E-value=47 Score=22.94 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEecCCCcEEEEeCCCceeeee
Q psy8891 176 VAVGSIDGNIYVWDCNTEQVEAV 198 (203)
Q Consensus 176 l~s~s~d~~v~~wd~~~~~~~~~ 198 (203)
+++.+.++++.++|.|-||..-.
T Consensus 134 ia~S~~g~~~tlFDPN~GEF~v~ 156 (188)
T 1ukf_A 134 IACSCEGSQFKLFDPNLGEFQSS 156 (188)
T ss_dssp EEEEEETTEEEEEETTTEEEEEE
T ss_pred EEeccCCCeEEEeCCCCceeecc
Confidence 55667899999999998887543
No 319
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=25.24 E-value=54 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=15.3
Q ss_pred cEEEEeCCCceeeeeec
Q psy8891 184 NIYVWDCNTEQVEAVLK 200 (203)
Q Consensus 184 ~v~~wd~~~~~~~~~~~ 200 (203)
.|++.|..||++++.|+
T Consensus 70 vVkVvD~~TgEVIRqIP 86 (117)
T 2hc5_A 70 YVKVIEDSTNEVIREIP 86 (117)
T ss_dssp EEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCcEEEeCC
Confidence 48899999999999986
No 320
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=23.74 E-value=2.4e+02 Score=21.39 Aligned_cols=52 Identities=4% Similarity=-0.040 Sum_probs=30.9
Q ss_pred CCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEE-EecCCCeEEEEECCCce
Q psy8891 18 DRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 18 D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~ 69 (203)
...|+..++...... .........+.+++.++.|+ +-...+.|..+++....
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 149 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 149 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC
Confidence 467888888764432 22222223466776555554 44566788889887654
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=23.72 E-value=2.1e+02 Score=20.66 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=32.8
Q ss_pred CCCEEEEEeCC--------CcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecC-C-----CeEEEEECCCce
Q psy8891 8 DPTKVVSGSCD--------RTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHF-D-----KKVRFWDFRAEE 69 (203)
Q Consensus 8 ~~~~l~t~s~D--------~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~-D-----~~i~vwd~~~~~ 69 (203)
+++..+.|+.+ ..+.+||+.+.+-.... ......++. .++...+.||. + ..+.+||+.+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 55666666643 45788888764422111 111111222 34567777776 2 467888877654
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.61 E-value=2.9e+02 Score=22.30 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=34.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCC
Q psy8891 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRA 67 (203)
Q Consensus 5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~ 67 (203)
-+|..+.++-=. ..++.++|+++.+......-..+++.|.+ +.+.|+=- .+..|.-|++..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV-T~taVyHWsi~~ 134 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNAVYHWSMEG 134 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE-CSSEEEEEESSS
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE-cCCeeEEecccC
Confidence 356666665543 68999999988554333222223344322 22333221 367899999864
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=23.12 E-value=2.4e+02 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.1
Q ss_pred ceEEcCCCCEEEEEeCCCcEEEEeCC
Q psy8891 2 CAKFLGDPTKVVSGSCDRTLKIWDLR 27 (203)
Q Consensus 2 ~~~~~~~~~~l~t~s~D~~v~lwdl~ 27 (203)
.++|.|||+.|+.+...+.|++++..
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 47889999834444567999999854
No 324
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=22.18 E-value=4.4e+02 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=20.5
Q ss_pred CCEEEEecC-CCcEEEEeCCCceeee
Q psy8891 173 DDYVAVGSI-DGNIYVWDCNTEQVEA 197 (203)
Q Consensus 173 ~~~l~s~s~-d~~v~~wd~~~~~~~~ 197 (203)
+++++.|.. |++|+|+.+...+.+.
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEE
Confidence 468999997 9999999998766554
No 325
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=21.74 E-value=2.5e+02 Score=20.73 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=46.0
Q ss_pred eEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-Ee--cCcCceEEEEeCCCCEEEEecC--CCeEEEEECCCceEEEeeee
Q psy8891 3 AKFLGDPT-KVVSGSCDRTLKIWDLRSTETK-FA--GSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIEL 76 (203)
Q Consensus 3 ~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-~~--~~~~~~~~~~~~~~~~l~s~~~--D~~i~vwd~~~~~~~~~~~~ 76 (203)
+++.+.+. ..++-...+.|.+.++...... .. .......++++|.+..|+-+.+ .+.|...++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 45555444 4455556678888888754321 11 1111233566766556655553 46777777654322111111
Q ss_pred -CCeEEEEEecCCCceEE
Q psy8891 77 -HGKITSLDLSKGTETKF 93 (203)
Q Consensus 77 -~~~v~~~~~~~~~~~~~ 93 (203)
-.....+++.++...++
T Consensus 164 ~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCSCEEEEEEETTTTEEE
T ss_pred CCCCccEEEEeccCCEEE
Confidence 12345666766544443
No 326
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=20.33 E-value=2.7e+02 Score=20.72 Aligned_cols=52 Identities=4% Similarity=-0.040 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEE-EecCCCeEEEEECCCce
Q psy8891 18 DRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEE 69 (203)
Q Consensus 18 D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~ 69 (203)
...|+..++....... ........+++++.++.|+ +-...+.|..+++....
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3567777876644322 1222223456776555554 44466788888887654
Done!