RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8891
(203 letters)
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 62.2 bits (149), Expect = 3e-12
Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 27/201 (13%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA----------------GTTI 51
+ VS S D LK+WD + + + + +
Sbjct: 23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82
Query: 52 ISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
+ F + F+ E++ + + + D+ K + + ND +
Sbjct: 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH----R 138
Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV 170
+++ W F + +L+L + F D +
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS----- 193
Query: 171 VDDDYVAVGSIDGNIYVWDCN 191
+ +A G +G + + + +
Sbjct: 194 -ERGLIATGFNNGTVQISELS 213
Score = 34.8 bits (78), Expect = 0.004
Identities = 10/96 (10%), Positives = 23/96 (23%), Gaps = 10/96 (10%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
+ +S D ++ WD + + + + A
Sbjct: 24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA----------IE 73
Query: 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
+ VA S G++ + E +
Sbjct: 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109
Score = 29.8 bits (65), Expect = 0.20
Identities = 27/252 (10%), Positives = 55/252 (21%), Gaps = 60/252 (23%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAG------------------SSCNDLVTYDGAGT 49
+ V + S L + + + +
Sbjct: 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 137
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGT 109
+++ W F + +L+L E+ S V G
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 197
Query: 110 TIISGHFDKKVR-------FWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA------- 155
I +G + V+ + E + I I S+ S A
Sbjct: 198 -IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256
Query: 156 -----------------------EGFKVQCDFTRAVFVVDD----DYVAVGSIDGNIYVW 188
+ + + V + + + DG + W
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
Query: 189 DCNTEQVEAVLK 200
D T++ L
Sbjct: 317 DVKTKERITTLN 328
Score = 29.1 bits (63), Expect = 0.39
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELH-----GKITSLDLSKGTETKFAGS------ 96
G T+ S +D K+RFWD + +E++ + +H + L + + ++
Sbjct: 301 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360
Query: 97 --SCNDLVTYDGAGTTIISGHFDKKVRFW 123
++ D+ +R++
Sbjct: 361 LKKGWRSGMGADLNESLCCVCLDRSIRWF 389
Score = 27.9 bits (60), Expect = 0.91
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 171 VDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+ + S DG + VWD E
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKD 51
Score = 27.1 bits (58), Expect = 1.8
Identities = 26/195 (13%), Positives = 67/195 (34%), Gaps = 19/195 (9%)
Query: 11 KVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGT---------TIISGHFDKKVR 61
+ +G + T++I +L + + S + ++ + + H
Sbjct: 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256
Query: 62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 121
E I T + E + + +++ +G T+ S +D K+R
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL--SFNDSGETLCSAGWDGKLR 314
Query: 122 FWDFRAEEKVRDIELH-----GKITSLDLSKGKYYFVFAEGFKVQC---DFTRAVFVVDD 173
FWD + +E++ + +H + L + + F V+ + + +
Sbjct: 315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374
Query: 174 DYVAVGSIDGNIYVW 188
+ + +D +I +
Sbjct: 375 ESLCCVCLDRSIRWF 389
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 62.1 bits (149), Expect = 4e-12
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 35/200 (17%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL----------VTYDGAGTT 50
A GD + +GS DR +++WD + S N+ V + G +
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268
Query: 51 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
++SG D+ V+ W+ + D + T T V
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV------TYIGHKDFVLSVATTQNDEY 322
Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVF 169
I+SG D+ V FWD ++ + ++ H + S+ ++ G +
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------------------SSL 364
Query: 170 VVDDDYVAVGSIDGNIYVWD 189
+ + A GS D +W
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384
Score = 58.7 bits (140), Expect = 6e-11
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 29/142 (20%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL---------------VTYD 45
F D VVSGS DR++K+W+L++ K + N V
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317
Query: 46 GAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTY 104
I+SG D+ V FWD ++ + ++ H + S+ ++ G +
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG-------------SSL 364
Query: 105 DGAGTTIISGHFDKKVRFWDFR 126
+G D K R W ++
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386
Score = 46.7 bits (109), Expect = 6e-07
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 22/165 (13%)
Query: 36 SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAG 95
+ G G I +G D+ VR WD V ++ + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS----- 259
Query: 96 SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155
V + G +++SG D+ V+ W+ + D + T G FV +
Sbjct: 260 ------VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+D+Y+ GS D + WD + +L+
Sbjct: 314 -----------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Score = 32.8 bits (73), Expect = 0.021
Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 21/202 (10%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 61
C KF D + +G C++T +++ + S + T S D
Sbjct: 67 CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD---- 121
Query: 62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 121
I S+ S + G+ + +D I+ +
Sbjct: 122 ----------------LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 122 FWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI 181
+ + ++ + + T AV D Y+A GS+
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 182 DGNIYVWDCNTEQVEAVLKDMH 203
D + VWD T + L +
Sbjct: 226 DRAVRVWDSETGFLVERLDSEN 247
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 59.0 bits (141), Expect = 4e-11
Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 44/181 (24%)
Query: 13 VSGSCDRTLKIWDLRSTETKFAGSSCNDLVT---YDGAGTTIISGHFDKKVRFWDFRAEE 69
VSG+CD + K+WD+R + + + + G +G D R +D RA++
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 70 KVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129
++ I + V++ +G +++G+ D WD +
Sbjct: 260 ELMTYSHDNIICGITS----------------VSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 130 KVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVW 188
+ + H +++ L ++ D VA GS D + +W
Sbjct: 304 RAGVLAGHDNRVSCLGVTD------------------------DGMAVATGSWDSFLKIW 339
Query: 189 D 189
+
Sbjct: 340 N 340
Score = 54.0 bits (128), Expect = 2e-09
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 25/130 (19%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL-----VTYDGAGTTIISGH 55
F + +GS D T +++DLR+ + S N + V++ +G +++G+
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289
Query: 56 FDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG 114
D WD ++ + H +++ L ++ G + +G
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-------------------GMAVATG 330
Query: 115 HFDKKVRFWD 124
+D ++ W+
Sbjct: 331 SWDSFLKIWN 340
Score = 45.9 bits (107), Expect = 1e-06
Identities = 20/114 (17%), Positives = 27/114 (23%), Gaps = 21/114 (18%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA----------- 155
+SG D + WD R + H I ++ F
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 156 ---------EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+ C T F + G D N VWD VL
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 58.6 bits (140), Expect = 4e-11
Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 68/214 (31%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-----------------------FAGSS 37
+ D T + S S D+T+++W + + E K + ++
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 38 CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGS 96
++ G ++SG DK ++ WD + + H + + G
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG-------- 258
Query: 97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA 155
G I+S DK +R WD++ + ++ + H +TSLD K
Sbjct: 259 -----------GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-------- 299
Query: 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
YV GS+D + VW+
Sbjct: 300 ----------------TAPYVVTGSVDQTVKVWE 317
Score = 58.2 bits (139), Expect = 5e-11
Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 28/205 (13%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKFAGSSCNDLVTYDGAGTTIISGHFD 57
+ + +VS S D+T+K+W++++ T +V + GT I S D
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164
Query: 58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVT--YDGAGTTIISGH 115
+ VR W +E ++ H + + + S T G ++SG
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224
Query: 116 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
DK ++ WD + + H +F +
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNW-----------------------VRGVLFHSGGKF 261
Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200
+ + D + VWD ++ L
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLN 286
Score = 47.0 bits (110), Expect = 4e-07
Identities = 33/226 (14%), Positives = 56/226 (24%), Gaps = 30/226 (13%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 61
F + +VS S D T+K+WD + + + D V +
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81
Query: 62 FWDFRAEEKVRDIEL---------------------------HGKITSLDLSKGTETKFA 94
+ I K+ + +T
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141
Query: 95 GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
+V + GT I S D+ VR W +E ++ H +
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE---CISWAPESS 198
Query: 155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
++ GS D I +WD +T L
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Score = 31.6 bits (70), Expect = 0.047
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
TR +F + S D I VWD T E LK
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 52.9 bits (125), Expect = 4e-09
Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 37/183 (20%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFR 66
D +VS S DRT+K+W+ + E + + ++SG D +R WD
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206
Query: 67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
+R +E H + I+SG +D K++ WD
Sbjct: 207 CGACLRVLEGH--------------------EELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY 186
A R + +L G+ + + D+ + S D I
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRL----------------QFDEFQIVSSSHDDTIL 290
Query: 187 VWD 189
+WD
Sbjct: 291 IWD 293
Score = 40.6 bits (93), Expect = 5e-05
Identities = 36/200 (18%), Positives = 57/200 (28%), Gaps = 9/200 (4%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67
D K+VSG D T+KIWD + E K + V +I
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 68 EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFW 123
++ + +H L L S + +D A T I+ +
Sbjct: 84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143
Query: 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG 183
++ + I + S ++ A D V GS D
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDN 198
Query: 184 NIYVWDCNTEQVEAVLKDMH 203
I +WD VL+
Sbjct: 199 TIRLWDIECGACLRVLEGHE 218
Score = 33.3 bits (74), Expect = 0.013
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 159 KVQC--DFTRAVFVV--DDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
++ C + ++ V+ + DD + G D I +WD NT + + +L
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52
Score = 29.8 bits (65), Expect = 0.20
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 25/117 (21%)
Query: 78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH 137
I + S + + ++SG D +R WD +R +E
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-- 215
Query: 138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194
+ D+ + G+ DG I VWD
Sbjct: 216 -----------------------GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 50.6 bits (119), Expect = 3e-08
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 44/193 (22%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDGAGTTIISGHFDKKVRFWDFR 66
D VVSGS D ++++WD+ + + L + + ++SG+ D V+ WD +
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245
Query: 67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
+ ++ ++ K + + +I+ D V+ WD +
Sbjct: 246 TGQCLQTLQGPNK-----------------HQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 127 AEEKVRDIELH------GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS 180
E +R++ G + + S K + G+
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG----------------SRN----GT 328
Query: 181 IDGNIYVWDCNTE 193
+ + V D + +
Sbjct: 329 EETKLLVLDFDVD 341
Score = 41.0 bits (94), Expect = 4e-05
Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 45/194 (23%)
Query: 12 VVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 69
VVSG+ D +K+WD + G + + G ++SG D +R WD
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRV-YSLQFDGIHVVSGSLDTSIRVWDVETGN 208
Query: 70 KVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129
+ + H +TS + ++SG+ D V+ WD +
Sbjct: 209 CIHTLTGHQSLTS--------------------GMELKDNILVSGNADSTVKIWDIK--- 245
Query: 130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
+ + + ++V S DG + +WD
Sbjct: 246 -------------------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 190 CNTEQVEAVLKDMH 203
T + L +
Sbjct: 287 LKTGEFIRNLVTLE 300
Score = 40.6 bits (93), Expect = 7e-05
Identities = 33/197 (16%), Positives = 50/197 (25%), Gaps = 6/197 (3%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDGAGTTIISGHFDKKVRFWDFR 66
++VSGS D TLK+W + + V IISG D+ ++ W+
Sbjct: 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85
Query: 67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
E + + H V G +
Sbjct: 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145
Query: 127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY 186
+V + D D +V GS+D +I
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ-----FDGIHVVSGSLDTSIR 200
Query: 187 VWDCNTEQVEAVLKDMH 203
VWD T L
Sbjct: 201 VWDVETGNCIHTLTGHQ 217
Score = 33.2 bits (74), Expect = 0.017
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
D + + GS D + VW T + L
Sbjct: 17 DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 47.9 bits (112), Expect = 2e-07
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 24/88 (27%)
Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ 161
+ + G +S D + W + + + S D+S
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-------------- 316
Query: 162 CDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
DD Y+ GS D V++
Sbjct: 317 ----------DDKYIVTGSGDKKATVYE 334
Score = 45.6 bits (106), Expect = 1e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL 101
+ + G +S D + W + + + S D+S
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD------------- 317
Query: 102 VTYDGAGTTIISGHFDKKVRFWD 124
I++G DKK ++
Sbjct: 318 ------DKYIVTGSGDKKATVYE 334
Score = 45.6 bits (106), Expect = 1e-06
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL--VTYDGAGTTIISGHFDK 58
+ KF VS D L W + F + + I++G DK
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 59 KVRFWD 64
K ++
Sbjct: 329 KATVYE 334
Score = 31.7 bits (70), Expect = 0.057
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDL 26
+ D +V+GS D+ ++++
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 31.3 bits (69), Expect = 0.073
Identities = 4/43 (9%), Positives = 8/43 (18%)
Query: 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
+ F + D + W K+
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 307
Score = 26.7 bits (57), Expect = 2.0
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK 32
V +G +K+WD+ K
Sbjct: 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 44.1 bits (102), Expect = 4e-06
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 22/82 (26%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
GT I S DK ++ W+ + + I + +I L
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG--------------------- 288
Query: 168 VFVVDDDYVAVGSIDGNIYVWD 189
+ + S +G I +
Sbjct: 289 -IIWTKQALVSISANGFINFVN 309
Score = 42.6 bits (98), Expect = 1e-05
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET----KFAGSSCNDLVTYDGAGTTIISGHF 56
+ D TK+ S S D+T+KIW++ + + + + ++S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Query: 57 DKKVRFWD 64
+ + F +
Sbjct: 302 NGFINFVN 309
Score = 41.0 bits (94), Expect = 5e-05
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA 107
GT I S DK ++ W+ + + I + +I L + +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG---------------IIWT-- 292
Query: 108 GTTIISGHFDKKVRFWD 124
++S + + F +
Sbjct: 293 KQALVSISANGFINFVN 309
Score = 31.0 bits (68), Expect = 0.077
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
D +A S D I +W+ T +VE +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIP 277
Score = 28.3 bits (61), Expect = 0.57
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDL 26
+ +VS S + + +
Sbjct: 285 QQLGIIWTKQALVSISANGFINFVNP 310
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 43.8 bits (101), Expect = 5e-06
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 20/82 (24%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
+ D +R WD + V+ L + +
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG--------------------NQQVG 302
Query: 168 VFVVDDDYVAVGSIDGNIYVWD 189
V + + S+DG + ++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYE 324
Score = 39.5 bits (90), Expect = 1e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDG----AGTTIISG 54
+ A D K + D T+++WD+ +++ K+ G IIS
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 55 HFDKKVRFWD 64
D + F++
Sbjct: 315 SLDGTLNFYE 324
Score = 39.1 bits (89), Expect = 2e-04
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 15/77 (19%)
Query: 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA 107
+ D +R WD + V+ L + +
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQ---------------QLGNQQVGVVATG 307
Query: 108 GTTIISGHFDKKVRFWD 124
IIS D + F++
Sbjct: 308 NGRIISLSLDGTLNFYE 324
Score = 28.7 bits (62), Expect = 0.43
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
A+ +D A D I VWD T +
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Score = 28.7 bits (62), Expect = 0.48
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 8 DPTKVVSGSCDRTLKIWDL 26
+++S S D TL ++L
Sbjct: 307 GNGRIISLSLDGTLNFYEL 325
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 42.2 bits (97), Expect = 2e-05
Identities = 22/203 (10%), Positives = 45/203 (22%), Gaps = 36/203 (17%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
F D + S D F S ++
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM- 240
Query: 61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA----GTTIISGHF 116
+ +++ + + +++ G + L+
Sbjct: 241 ----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 117 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYV 176
+ +D + + E+ +T L LS D V
Sbjct: 297 KGVLLKYDV---KTRKVTEVKNNLTDLRLSA------------------------DRKTV 329
Query: 177 AVGSIDGNIYVWDCNTEQVEAVL 199
V DG IY + + E +
Sbjct: 330 MVRKDDGKIYTFPLEKPEDERTV 352
Score = 37.5 bits (85), Expect = 6e-04
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
L +D+++ + ++ D + T++ D K+ +
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-LRLSADRKTVMVRKDDGKIYTFP 342
Query: 65 FRAEEKVRDIELHGK 79
E R +E +
Sbjct: 343 LEKPEDERTVETDKR 357
Score = 31.4 bits (69), Expect = 0.065
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 22/92 (23%)
Query: 48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA 107
+ +D + + E+ +T L LS
Sbjct: 288 AAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLS-------------------AD 325
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGK 139
T++ D K+ + E R +E +
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTVETDKR 357
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 40.2 bits (92), Expect = 8e-05
Identities = 14/203 (6%), Positives = 51/203 (25%), Gaps = 34/203 (16%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL-------VTYDGAGTTIIS 53
+ ++++ G + ++ + L E + L
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211
Query: 54 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS 113
D +V F + + L+ + + + + +
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYT 268
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD 173
D + W+ + +K+++ + + + ++ D
Sbjct: 269 AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA------------------------CSD 304
Query: 174 DYVAVGSIDGNIYVWDCNTEQVE 196
+ + + + D + +E
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIE 327
Score = 37.9 bits (86), Expect = 5e-04
Identities = 10/136 (7%), Positives = 37/136 (27%), Gaps = 19/136 (13%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL------------------V 42
A + S D + + + S +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257
Query: 43 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
+ + + D + W+ + +K+++ + + + ++ ++ ++ +D
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTF 316
Query: 103 TYDGAGTTIISGHFDK 118
+ A I +
Sbjct: 317 KTNAAIDQTIELNASS 332
Score = 32.9 bits (73), Expect = 0.020
Identities = 10/96 (10%), Positives = 22/96 (22%), Gaps = 8/96 (8%)
Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
D +V F + S + + + + +
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDD--------YNSSKRFAFRCHRLNLKDTNLAYPVNSI 257
Query: 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
F ++ DG I W+ T + +
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Score = 31.7 bits (70), Expect = 0.043
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+ + S DG++ V+ + + L
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLL 50
Score = 31.4 bits (69), Expect = 0.059
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF 33
K + + ++ S D +L ++
Sbjct: 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV 47
Score = 30.6 bits (67), Expect = 0.11
Identities = 5/62 (8%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH----GKITSLDLSKGTETKFAGSS 97
+ + + ++ +D + + F + K D+ + + T+ + +
Sbjct: 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76
Query: 98 CN 99
Sbjct: 77 VQ 78
Score = 27.5 bits (59), Expect = 1.0
Identities = 4/67 (5%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH----GKITSLDLSKGKYYFVFAEG 157
+ + + ++ +D + + F + K D+ + + ++
Sbjct: 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76
Query: 158 FKVQCDF 164
+ +
Sbjct: 77 VQGEILK 83
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 37.9 bits (86), Expect = 4e-04
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 17/133 (12%)
Query: 1 MCAKFLGDPTKVVSGSCDRT-LKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDK 58
+ F+ + + V +G L +D + + F G + G + DK
Sbjct: 247 LAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
K A D ++ + + G + + D
Sbjct: 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGG---------------KAKCSQFCTTGMDG 351
Query: 119 KVRFWDFRAEEKV 131
+ WD R+ E
Sbjct: 352 GMSIWDVRSLESA 364
Score = 37.5 bits (85), Expect = 7e-04
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTYDGAGTTIISGHF 56
C + D T++ + + I++ + + V + I++
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71
Query: 57 DKKVRFWDF 65
D+ W
Sbjct: 72 DRNAYVWTL 80
Score = 36.8 bits (83), Expect = 0.001
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 27/93 (29%)
Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG---KITSLDLSKGKYYFVFAEGF 158
++ T I + +V ++ + V+ EL ++T +D +
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----------- 61
Query: 159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191
D + + D N YVW
Sbjct: 62 -------------DSNRIVTCGTDRNAYVWTLK 81
Score = 34.1 bits (76), Expect = 0.009
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 7 GDPTKVVSGSCDRTLKIWDLRSTETKFAG 35
++ + D + IWD+RS E+
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSLESALKD 367
Score = 29.8 bits (65), Expect = 0.24
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 172 DDDYVAVGSIDGNIYVWDCNTEQVEAV 198
D +A+ + +++++ + + V
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQV 44
Score = 25.2 bits (53), Expect = 6.8
Identities = 17/126 (13%), Positives = 34/126 (26%), Gaps = 22/126 (17%)
Query: 77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL 136
+ + D + G + + G + DKK A D
Sbjct: 265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH 324
Query: 137 HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE 196
++ + + G +DG + +WD + +E
Sbjct: 325 KNSVSQISVLSGGKAKC--------------------SQFCTTGMDGGMSIWDVRS--LE 362
Query: 197 AVLKDM 202
+ LKD+
Sbjct: 363 SALKDL 368
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 37.7 bits (85), Expect = 6e-04
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 13 VSGSCDRTLKIWDLRS-------TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
+GS D ++ +W++ + A SS N ++ + TTI+S D ++FW+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWN 296
Score = 34.2 bits (76), Expect = 0.007
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 21/79 (26%)
Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV 170
+ +G D V W+ I +V
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAH---------------------AMSSVNSVIW 277
Query: 171 VDDDYVAVGSIDGNIYVWD 189
+++ + D NI W+
Sbjct: 278 LNETTIVSAGQDSNIKFWN 296
Score = 34.2 bits (76), Expect = 0.007
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 16/74 (21%)
Query: 51 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
+ +G D V W+ I A SS N ++ + TT
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAH--------------AMSSVNSVIWLNE--TT 282
Query: 111 IISGHFDKKVRFWD 124
I+S D ++FW+
Sbjct: 283 IVSAGQDSNIKFWN 296
Score = 33.4 bits (74), Expect = 0.014
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
D + +G+I WD +T V D+H
Sbjct: 20 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 54
Score = 31.9 bits (70), Expect = 0.040
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRS 28
D + S + + WD+ +
Sbjct: 17 ALSSSADGKTLFSADAEGHINSWDIST 43
Score = 28.8 bits (62), Expect = 0.44
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 8 DPTKVVSGSCDRTLKIWDL 26
+ T +VS D +K W++
Sbjct: 279 NETTIVSAGQDSNIKFWNV 297
Score = 28.0 bits (60), Expect = 0.71
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 2/104 (1%)
Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVFAEGFK 159
++ G T+ S + + WD R IT + + F +
Sbjct: 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 77
Query: 160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
++ V VA + + + H
Sbjct: 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 37.5 bits (85), Expect = 7e-04
Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 31/202 (15%)
Query: 5 FLGDPTKVVSGSC-DRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 63
D + + T +I + + Y ++ + K+
Sbjct: 164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI--NHPAYSQKAGRLVWPTYTGKIHQI 221
Query: 64 DFRAEEKVRDIELHGKIT---SLDLSKGTETKFAGSSCNDLVTYDGA-GTTIISGHFDKK 119
D + + + + G + A D + +
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281
Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSK-GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV 178
V D + E++ E+ +I S+++S+ K A+
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY-----------------------AL 318
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
+ D +Y+ D + + +
Sbjct: 319 STGDKTLYIHDAESGEELRSVN 340
Score = 37.5 bits (85), Expect = 7e-04
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 8/143 (5%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTYDGAGTTIISGHFDKK 59
+ ++V + + DL S + KF A + + G ++ H
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261
Query: 60 VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKF--AGSSCNDL-VTYDGAGTTIISGHF 116
+ ++ R + LD G G + + V+ D
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 117 DKKVRFWDFRAEEKVRDIELHGK 139
DK + D + E++R + G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLGH 344
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 37.2 bits (84), Expect = 8e-04
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-----GSSCNDLVTYDGAGTTIISGH 55
+ + V +GS D + I+ ++ N+L+ +T++S
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSG 276
Query: 56 FDKKVRFWD 64
D ++ W+
Sbjct: 277 ADACIKRWN 285
Score = 29.5 bits (64), Expect = 0.23
Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 27/95 (28%)
Query: 97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-VRDIELH-GKITSLDLSKGKYYFVF 154
+ + + +G D + + + K ++ + H + +L
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-------- 267
Query: 155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
+ D I W+
Sbjct: 268 -----------------TPSTLVSSGADACIKRWN 285
Score = 29.2 bits (63), Expect = 0.36
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 11 KVVSGSCDRTLKIWDLRSTET 31
++SGS D + W S
Sbjct: 23 PLISGSYDGRIMEWSSSSMHQ 43
Score = 28.0 bits (60), Expect = 0.75
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ 194
+ + + + + GS DG I W ++
Sbjct: 13 NKGITALTVNPLISGSYDGRIMEWSSSSMH 42
Score = 26.8 bits (57), Expect = 2.1
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 110 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVF 169
+ISG +D ++ W + + I SLD SK + Y + ++ +
Sbjct: 23 PLISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 78
Query: 170 VVDDDYVAVGSIDGNIYVWDCNTEQV 195
VA + DG V + + +
Sbjct: 79 FGSQPKVASANNDGFTAVLTNDDDLL 104
Score = 24.9 bits (52), Expect = 8.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTE 90
+ISG +D ++ W + + I SLD SK E
Sbjct: 23 PLISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKAQE 59
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 37.3 bits (85), Expect = 8e-04
Identities = 10/197 (5%), Positives = 40/197 (20%), Gaps = 24/197 (12%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
+ S + A + + + G + +
Sbjct: 181 GSCPASLAASDLAAAPAAAGI-VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239
Query: 65 FRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 123
I+ + + + A D + + +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299
Query: 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG 183
+ I ++ ++ D + +
Sbjct: 300 TASVGQTSGPISNGHDSDAIIAAQ---------------DGASDNYAN-------SAGTE 337
Query: 184 NIYVWDCNTEQVEAVLK 200
+ ++D ++Q ++ ++
Sbjct: 338 VLDIYDAASDQDQSSVE 354
Score = 34.6 bits (78), Expect = 0.006
Identities = 10/124 (8%), Positives = 29/124 (23%), Gaps = 17/124 (13%)
Query: 13 VSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72
+ G+ + A D + + + +
Sbjct: 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308
Query: 73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 132
I ++ ++ DGA + + + +D +++
Sbjct: 309 PISNGHDSDAIIAAQ-----------------DGASDNYANSAGTEVLDIYDAASDQDQS 351
Query: 133 DIEL 136
+EL
Sbjct: 352 SVEL 355
Score = 31.5 bits (70), Expect = 0.062
Identities = 16/226 (7%), Positives = 46/226 (20%), Gaps = 38/226 (16%)
Query: 10 TKVVSGSCDRTLKIWDLRS----------TETKFAGSSCNDLVTYDGAGTTIISGHF-DK 58
+ G ++++D + +F+ ++ + ++ F
Sbjct: 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146
Query: 59 KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
+ + T + GS L D A +G
Sbjct: 147 AAAGLSVPGASDDQLTKSAS--CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204
Query: 119 KVRFWD-------FRAEEKVRDIELHGKITSLDLSKGKYYFVFA---------------- 155
+ + + I D+ A
Sbjct: 205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264
Query: 156 --EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL 199
+ + + + + + + N + Q +
Sbjct: 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310
Score = 28.8 bits (63), Expect = 0.47
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 4/76 (5%)
Query: 5 FLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDL-VTYDGAGTTIISGHFDKKV 60
L + + G + + DGA + + +
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339
Query: 61 RFWDFRAEEKVRDIEL 76
+D +++ +EL
Sbjct: 340 DIYDAASDQDQSSVEL 355
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 36.7 bits (83), Expect = 0.001
Identities = 20/205 (9%), Positives = 48/205 (23%), Gaps = 29/205 (14%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
+ D +K+ D + + + S + + H V
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197
Query: 61 RFWDFRAEE----KVRDIELHGKITSLDLSKGTETKFA-GSSCNDLVTYDGAGTTIISGH 115
F + ++DL G + +
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257
Query: 116 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
+ +D ++ + L S+++S D
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVST------------------------DGST 293
Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200
V +G G++ +D T + + +
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVD 318
Score = 27.8 bits (60), Expect = 0.99
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 174 DYVAVGSIDGNIYVWDCNTEQVEAVLK 200
DY+ + + V D V+ V+
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVIT 28
Score = 25.9 bits (55), Expect = 4.0
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 12 VVSGSCDRTLKIWDL------RSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
+++ + L + D + AG + + G + + + + D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 66 RAEEKVRDIELHG 78
E + I+L
Sbjct: 64 VTGETLGRIDLST 76
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 36.1 bits (82), Expect = 0.002
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 24/100 (24%)
Query: 101 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKV 160
L D ++ ++ D +++ V+ I+ + +S
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA------------- 71
Query: 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
Y+ V D I + D ++ V +
Sbjct: 72 -----------SGRYLLVIGRDARIDMIDLWAKEPTKVAE 100
Score = 26.8 bits (58), Expect = 2.2
Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 14/130 (10%)
Query: 12 VVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 69
V+ + + D S + + +G ++ D ++ D A+E
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94
Query: 70 KVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129
+ E+ I + + + I ++ + D E
Sbjct: 95 PTKVAEIKIGIEARSVESSKFKGYEDRYT------------IAGAYWPPQFAIMDGETLE 142
Query: 130 KVRDIELHGK 139
+ + G
Sbjct: 143 PKQIVSTRGM 152
Score = 26.1 bits (56), Expect = 3.3
Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 39/209 (18%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
+ + +S D R ++ G G+ + G K
Sbjct: 229 NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288
Query: 61 RFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 119
+ + +KV +++ G + + + ++ N +
Sbjct: 289 PQYAW---KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP------------DARISQS 333
Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK--VQCDFTRAVFVVDDDYVA 177
V +D + + + + L EG K VQ ++ + D V
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLG-----------EGAKRVVQPEYNK-----RGDEVW 377
Query: 178 V-----GSIDGNIYVWDCNTEQVEAVLKD 201
+ + V D T +++AV+KD
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKD 406
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 34.7 bits (78), Expect = 0.005
Identities = 20/208 (9%), Positives = 51/208 (24%), Gaps = 33/208 (15%)
Query: 1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
+ D + V+G + + + T + + +
Sbjct: 148 YLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207
Query: 61 RFWDFRAEEKVRDIELH-----GKITSLDLSKGT---ETKFAGSSCNDLVTYDGAGTTII 112
A K + S+DL G + + I
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 267
Query: 113 SGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD 172
G ++ + +D + + ++ L + K
Sbjct: 268 YGVLNR-LAKYDLKQRKLIKAANLDHTYYCVAFDK------------------------K 302
Query: 173 DDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
D + +G ++ V++ +T + +K
Sbjct: 303 GDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
Score = 34.7 bits (78), Expect = 0.006
Identities = 20/195 (10%), Positives = 46/195 (23%), Gaps = 4/195 (2%)
Query: 13 VSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR 72
V + + DL + + F + + + + K+V +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 73 DIEL-HGKITSLDLSKGTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK 130
+ ++ + G E K V A + D + +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 131 VRDIELHGKITSLDLSK--GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVW 188
+ L + ++ + + +T A F D A +
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 189 DCNTEQVEAVLKDMH 203
D T +
Sbjct: 236 DLKTGKTHTQEFADL 250
Score = 30.5 bits (67), Expect = 0.12
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+Y+ V + N++V D ++ V
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCV 35
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 34.5 bits (77), Expect = 0.006
Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 20/198 (10%)
Query: 8 DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTY--DGAGTTIISGHFDKKVRFWDF 65
+ V++G+ D+ ++++D + + S + V G ++SG D+ VR WD
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81
Query: 66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 125
+ E H + + I++G D + W
Sbjct: 82 KKGCCTHVFEGHNS----------------TVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNI 185
E V D + + + G + + V GS D +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHT--PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183
Query: 186 YVWDCNTEQVEAVLKDMH 203
VWD + +L
Sbjct: 184 IVWDVAQMKCLYILSGHT 201
Score = 34.5 bits (77), Expect = 0.006
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
+D+YV G+ D I V+D ++ L
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50
Score = 28.7 bits (62), Expect = 0.45
Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 28/96 (29%)
Query: 96 SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFV 153
++ + + T+ + ++SG + + ++ R+ + V L +I S++
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK------- 333
Query: 154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
VA DG ++
Sbjct: 334 ------------------GKTLVAAVEKDGQSFLEI 351
Score = 28.3 bits (61), Expect = 0.67
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----TKFAGSSCNDLVTYDGAGTTIISGHFD 57
++ + I++LRS + + V + G T + + D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKD 344
Query: 58 KKVRFWDF 65
+
Sbjct: 345 GQSFLEIL 352
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.0 bits (68), Expect = 0.085
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 13 VSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWD 64
++ S + + D+ S T T GS+ GT + ++ V D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIID 60
Score = 26.4 bits (56), Expect = 2.8
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 172 DDDYVAV-GSIDGNIYVWDCNTEQVEAVLK 200
D V V S + V D T + A +
Sbjct: 254 DGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 25.6 bits (54), Expect = 4.9
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 12 VVSGSCDRTLKIWDLRS 28
V+ S T+ + D +
Sbjct: 259 YVALSFCNTVSVIDTAT 275
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.8 bits (66), Expect = 0.20
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA 197
G+I +D S + V G+ V + Y+ V DG + + D ++
Sbjct: 42 GQIALIDGSTYEIKTVLDTGYAVH----ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 97
Query: 198 VLK 200
V +
Sbjct: 98 VAE 100
Score = 29.0 bits (64), Expect = 0.40
Identities = 21/187 (11%), Positives = 41/187 (21%), Gaps = 9/187 (4%)
Query: 8 DPTKVVSGSCDRTLKIWDL-----RSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 62
P +V+ + + D T A +D I + + K+
Sbjct: 174 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVV 233
Query: 63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF 122
D + + V + G+ G D + I +
Sbjct: 234 IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 293
Query: 123 WDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID 182
W G + Y + + + +V V D + D
Sbjct: 294 WKILDSFPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 349
Query: 183 GNIYVWD 189
Sbjct: 350 PEFKTLP 356
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.4 bits (62), Expect = 0.55
Identities = 9/98 (9%), Positives = 18/98 (18%), Gaps = 17/98 (17%)
Query: 101 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKV 160
V + G V D + +I + K
Sbjct: 31 SVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHV-----------PSPYN 79
Query: 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV 198
+ V +I V + + +
Sbjct: 80 TAFSADGK------RLYVANITPAASVTVIDAVSKKML 111
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 27.6 bits (61), Expect = 1.0
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKG-TETKFAGSSCNDLVTYDGAG 108
I +G V + + + KI D E T+DG G
Sbjct: 272 FIANGKLSPTVSVIAIDKLDDLFE----DKIELRDTIVAEPELGLGPLHT----TFDGRG 323
Query: 109 TTIISGHFDKKVRFWDF 125
+ D +V W+
Sbjct: 324 NAYTTLFIDSQVCKWNI 340
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 26.7 bits (59), Expect = 1.6
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG 157
GHFD +++ + + + + ++ + L G V A G
Sbjct: 110 GHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARG 153
>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 25.7 bits (56), Expect = 2.1
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 162 CDFTRAVFVVDDDYVA-VGSIDGNIYVWDC 190
CD T + YV + GN ++ C
Sbjct: 66 CDLTDEWRSTHEAYVTVLEGFSGNTTLFSC 95
>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase,
substrate-binding domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 96
Score = 24.3 bits (53), Expect = 6.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDG 46
+G+ T V R LK WD+++ T SS N V +
Sbjct: 33 IGEATLVKE---TRGLK-WDVKNWPTSVVTGRVSSSNRFVGDNC 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.425
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,382
Number of extensions: 37323
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 120
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.4 bits)