BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8892
(1183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 67/502 (13%)
Query: 657 EYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAG--REESLLTDVPLFVSYMV-DTDFNW 713
++D+ RLTE+P+ +VL+LEAG E L + PL +V ++ F+W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 714 GYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSY 772
Y T G + ++ +PRG+ +GG+S ++YMV RG +DFD + A+ G+ GW++
Sbjct: 62 NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 773 RDVLPYFKKSEDI-------SVSRLKGSPYHGIGGYLKVEQTSWRTPLS----AAFLEAG 821
++ + +K+E + + S HG G + + + TPL A E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 822 SELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILID 881
E ++ +P+G S+ +A+ G R S+S A++RP + R NL V A+VTK++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 882 PITKRTYG---VEFSKNR--KSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNI 936
T VE+++ + TV +KEV+LSAG++ +P LL LSG+G L + I
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGI 297
Query: 937 -PVIQDLKVGYNMQDHLSMAGLVFLVNSSVT------------IVESKYTKPRY--LMDF 981
++ + VG N+ DHL + F VNS+ T + ++T R L
Sbjct: 298 DTIVNNPSVGRNLSDHLLLPA-AFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTAL 356
Query: 982 LVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKF 1041
+ N L LP + +P A PN E +F + F
Sbjct: 357 IANHLAWLRLPSNSSIFQTFPDP-AAGPNSAHWETIFS------------------NQWF 397
Query: 1042 YNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDL 1101
+ + RP S+ L+ P ++RG +KL +SNPFD P P YLS D+
Sbjct: 398 HPAIPRP-DTGSFMSVTNALISP-------VARGDIKLATSNPFDKPLINPQYLSTEFDI 449
Query: 1102 DVLIEAIKMAVELSETRAMQKY 1123
+I+A+K + +A +
Sbjct: 450 FTMIQAVKSNLRFLSGQAWADF 471
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 177/364 (48%), Gaps = 56/364 (15%)
Query: 47 EYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAG--PEEIILDEIPLFVSHIV-SSDFNW 103
++D++ A RLTE+ + +VL+LEAG E ++ E PL +V +S F+W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 104 GYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVM 163
YTT G + +PRG+++
Sbjct: 62 NYTTTAQ----AGYNGRSIAYPRGRML--------------------------------- 84
Query: 164 GGTSVTNYMVYTRGVPHDYDGWAAL-GNIGWSFEEVLPYFKKSE-------DMKTAELKS 215
GG+S +YMV RG D+D +AA+ G+ GW+++ + + +K+E + T+
Sbjct: 85 GGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFI 144
Query: 216 SPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIV---DPSEPNAIGFSYVLANTGNG 272
HG G + I P + TPL VL E + D + +G S+ +A+ GNG
Sbjct: 145 PAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVGNG 204
Query: 273 ERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDN-LKRATGVEFFKNK--QRHTVRA 329
+R S+S A+LRP + RPNL V A+VTK++ N L VE+ + + TV A
Sbjct: 205 QRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCA 264
Query: 330 RKEVILSAGALNSPQLLMLSGIGPRDHLEEMNI-PVIQDLKVGYNLQDHVSMAGLVFLVN 388
+KEV+LSAG++ +P LL LSGIG + L + I ++ + VG NL DH+ + F VN
Sbjct: 265 KKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPA-AFFVN 323
Query: 389 DSVT 392
+ T
Sbjct: 324 SNQT 327
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 135/526 (25%), Positives = 221/526 (42%), Gaps = 81/526 (15%)
Query: 652 KIFEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYM--VDT 709
+ ++E+D+ RL+E+P +V L+EAG ++ + +V +M +++
Sbjct: 8 NLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLES 67
Query: 710 DFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEA-LGNP 768
++W Y E E M R K MGG S N + +D D WEA G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHA-----RAKVMGGCSSHNACIAFWAPREDLDEWEAKYGAT 122
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELG--- 825
GW+ P +K+ E + +P+HG G + + + P A L+A + G
Sbjct: 123 GWNAEAAWPLYKRLE-TNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR 181
Query: 826 --YDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPI 883
++ N F + + + G R S+S ++I PI ++ N + R +++ D
Sbjct: 182 AKFNTGTTVVNGANF-FQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 884 TKRTYGVEFSKNRKSYT--VKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQD 941
+R GV+ + +T + R EV+LS G +++P+LLMLSG+GP HL E I V+ D
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 942 LK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAF 1000
VG ++QDH G+V + ES E F
Sbjct: 300 SPGVGEHLQDHPE--GVVQFEAKQPMVAESTQWW---------------------EIGIF 336
Query: 1001 YPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYR---PFAEREAYSI 1057
PT+ D PD+ + +G S F R P E +S+
Sbjct: 337 TPTEDGLD--RPDLMMHYG------------------SVPFDMNTLRHGYPTTEN-GFSL 375
Query: 1058 VPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSD--SRDLDVLIEAIKMAVELS 1115
P + RSRG VR LRS + D P P Y +D D+ V++ I+ A E++
Sbjct: 376 TPNVTHARSRGTVR-------LRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIA 428
Query: 1116 ETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQI 1161
AM ++ + L PG E ++DE R+ ++H +
Sbjct: 429 AQPAMAEWTGRELS---PGV---EAQTDEELQDYIRKTHNTVYHPV 468
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 151/340 (44%), Gaps = 51/340 (15%)
Query: 47 EYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEIILDEIPLFVS--HIVSSDFNWG 104
E+D+I A RL+E+ +V L+EAGP++ + E+ ++ S ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
Y E + M++ R KVMG
Sbjct: 73 YPIEPQENGNSFMRHARA--------------------------------------KVMG 94
Query: 165 GTSVTNYMVYTRGVPHDYDGWAA-LGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGG 223
G S N + D D W A G GW+ E P +K+ E + A +P+HG G
Sbjct: 95 GCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-PDAPHHGDSG 153
Query: 224 YLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAI--GFSYVLANT-GNGERYSASRA 280
+ + + P +LDA + G + + G ++ N +G R S+S +
Sbjct: 154 PVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVS 213
Query: 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVR--ARKEVILSAG 338
++ PI ++ N + R +++ D + +R TGV+ + HT R AR EV+LS G
Sbjct: 214 YIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 339 ALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDH 377
A+++P+LLMLSGIGP HL E I V+ D VG +LQDH
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 135/526 (25%), Positives = 221/526 (42%), Gaps = 81/526 (15%)
Query: 652 KIFEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYM--VDT 709
+ ++E+D+ RL+E+P +V L+EAG ++ + +V +M +++
Sbjct: 8 NLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLES 67
Query: 710 DFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEA-LGNP 768
++W Y E E M R K MGG S N + +D D WEA G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHA-----RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELG--- 825
GW+ P +K+ E + +P+HG G + + + P A L+A + G
Sbjct: 123 GWNAEAAWPLYKRLE-TNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR 181
Query: 826 --YDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPI 883
++ N F + + + G R S+S ++I PI ++ N + R +++ D
Sbjct: 182 AKFNTGTTVVNGANF-FQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 884 TKRTYGVEFSKNRKSYT--VKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQD 941
+R GV+ + +T + R EV+LS G +++P+LLMLSG+GP HL E I V+ D
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 942 LK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAF 1000
VG ++QDH G+V + ES E F
Sbjct: 300 SPGVGEHLQDHPE--GVVQFEAKQPMVAESTQWW---------------------EIGIF 336
Query: 1001 YPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYR---PFAEREAYSI 1057
PT+ D PD+ + +G S F R P E +S+
Sbjct: 337 TPTEDGLD--RPDLMMHYG------------------SVPFDMNTLRHGYPTTEN-GFSL 375
Query: 1058 VPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSD--SRDLDVLIEAIKMAVELS 1115
P + RSRG VR LRS + D P P Y +D D+ V++ I+ A E++
Sbjct: 376 TPNVTHARSRGTVR-------LRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIA 428
Query: 1116 ETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQI 1161
AM ++ + L PG E ++DE R+ ++H +
Sbjct: 429 AQPAMAEWTGRELS---PGV---EAQTDEELQDYIRKTHNTVYHPV 468
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 151/340 (44%), Gaps = 51/340 (15%)
Query: 47 EYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEIILDEIPLFVS--HIVSSDFNWG 104
E+D+I A RL+E+ +V L+EAGP++ + E+ ++ S ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
Y E + M++ R KVMG
Sbjct: 73 YPIEPQENGNSFMRHARA--------------------------------------KVMG 94
Query: 165 GTSVTNYMVYTRGVPHDYDGWAA-LGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGG 223
G S N + D D W A G GW+ E P +K+ E + A +P+HG G
Sbjct: 95 GCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-PDAPHHGDSG 153
Query: 224 YLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAI--GFSYVLANT-GNGERYSASRA 280
+ + + P +LDA + G + + G ++ N +G R S+S +
Sbjct: 154 PVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVS 213
Query: 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVR--ARKEVILSAG 338
++ PI ++ N + R +++ D + +R TGV+ + HT R AR EV+LS G
Sbjct: 214 YIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 339 ALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDH 377
A+++P+LLMLSGIGP HL E I V+ D VG +LQDH
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 135/526 (25%), Positives = 220/526 (41%), Gaps = 81/526 (15%)
Query: 652 KIFEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYM--VDT 709
+ ++E+D+ RL+E+P +V L+EAG ++ + +V +M +++
Sbjct: 8 NLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLES 67
Query: 710 DFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEA-LGNP 768
++W Y E E M R K MGG S N + +D D WEA G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHA-----RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELG--- 825
GW+ P +K+ E + +P+HG G + + + P A L+A + G
Sbjct: 123 GWNAEAAWPLYKRLE-TNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR 181
Query: 826 --YDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPI 883
++ N F + + + G R S+S ++I PI ++ N + R +++ D
Sbjct: 182 AKFNTGTTVVNGANF-FQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 884 TKRTYGVEFSKNRKSYT--VKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQD 941
+R GV+ + +T + R EV+LS G +++P+LLMLSG+GP HL E I V+ D
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 942 LK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAF 1000
VG ++QDH G+V + ES E F
Sbjct: 300 SPGVGEHLQDHPE--GVVQFEAKQPMVAESTQWW---------------------EIGIF 336
Query: 1001 YPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYR---PFAEREAYSI 1057
PT+ D PD+ + +G S F R P E +S+
Sbjct: 337 TPTEDGLD--RPDLMMHYG------------------SVPFDMNTLRHGYPTTEN-GFSL 375
Query: 1058 VPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSD--SRDLDVLIEAIKMAVELS 1115
P + RSRG VR LRS + D P P Y +D D+ V++ I+ A E++
Sbjct: 376 TPNVTHARSRGTVR-------LRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIA 428
Query: 1116 ETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQI 1161
AM ++ + L PG E ++DE R+ +H +
Sbjct: 429 AQPAMAEWTGRELS---PGV---EAQTDEELQDYIRKTHNTAYHPV 468
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 151/340 (44%), Gaps = 51/340 (15%)
Query: 47 EYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEIILDEIPLFVS--HIVSSDFNWG 104
E+D+I A RL+E+ +V L+EAGP++ + E+ ++ S ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
Y E + M++ R KVMG
Sbjct: 73 YPIEPQENGNSFMRHARA--------------------------------------KVMG 94
Query: 165 GTSVTNYMVYTRGVPHDYDGWAA-LGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGG 223
G S N + D D W A G GW+ E P +K+ E + A +P+HG G
Sbjct: 95 GCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-PDAPHHGDSG 153
Query: 224 YLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAI--GFSYVLANT-GNGERYSASRA 280
+ + + P +LDA + G + + G ++ N +G R S+S +
Sbjct: 154 PVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVS 213
Query: 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVR--ARKEVILSAG 338
++ PI ++ N + R +++ D + +R TGV+ + HT R AR EV+LS G
Sbjct: 214 YIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 339 ALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDH 377
A+++P+LLMLSGIGP HL E I V+ D VG +LQDH
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 214/501 (42%), Gaps = 84/501 (16%)
Query: 675 RLTENPNWTVLLLEAGREESLLTDV--PLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTC 732
RL+E+P+ VLL+EAG EE D+ P + ++W Y+TE G + +
Sbjct: 35 RLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTEAQA----GTAGRAH 89
Query: 733 NWPRGKAMGGTSVINYMVYSRGVPQDFDNW-EALGNPGWSYRDVLPYFKKSEDISVSRLK 791
+W RG+ +GG+S ++ M Y RG P DF W +A G+ W + ++LP F+ ED +
Sbjct: 90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDG 149
Query: 792 GS------PYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYDQVD--HCENPIGFSYVLA 843
P H L ++ S PL+ AF+EAG+ LG +++ + IG +
Sbjct: 150 IHGKGGPLPIH-----LPADEVS---PLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSL 201
Query: 844 NKIRGARQSASKAFI-RPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVK 902
N G R +A+ A++ + +R R NL + +RV ++ ++ R+ V R+
Sbjct: 202 NIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEV---VGRQGSAEV 258
Query: 903 CRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDL-KVGYNMQDHLSMAGLVFLV 961
+++L AG L SP LLM SG+GP L+ + + D+ +G N+QDHL AG ++
Sbjct: 259 FADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAA 318
Query: 962 NSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPG 1021
V +++ E++A+ P EIV G G
Sbjct: 319 RKPVPPSRLQHS----------------------ESMAYMRADSFTAAGQP--EIVVGCG 354
Query: 1022 ALTGDSGGSLRKVLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRS 1081
++ + A AYS++ + P SRG VR+S
Sbjct: 355 VA----------------PIVSESFPAPAAGSAYSLLFGITHPTSRGSVRIS-------G 391
Query: 1082 SNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVKFPGCEPYEFR 1141
D P YL RD + A++ + + + + + L PG
Sbjct: 392 PELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL---LPGTPNSAAE 448
Query: 1142 SDEYWACAARQLTTNLHHQIC 1162
D++ AR + T HH C
Sbjct: 449 MDDF---IARSVIT--HHHPC 464
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 158/358 (44%), Gaps = 61/358 (17%)
Query: 45 AEEYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEIILDEI-PLFVSHIVSSDFNW 103
A D + A RL+E+ + VLL+EAG E D P + ++W
Sbjct: 15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDW 74
Query: 104 GYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVM 163
Y TE G T G H WA G+++
Sbjct: 75 DYRTEAQAG-----------------------------TAGRAHH---WA-----RGRLI 97
Query: 164 GGTSVTNYMVYTRGVPHDYDGWA-ALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVG 222
GG+S + M Y RG P D+ W A G+ W ++E+LP F+ ED L HG G
Sbjct: 98 GGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHP---LGGDGIHGKG 154
Query: 223 GYLKIERPLWR-TPLAKCVLDAGHEMGYDIVDP-SEPNAIGFSYVLANTGNGERYSASRA 280
G L I P +PLA+ ++AG +G ++ + IG + N +G R +A+ A
Sbjct: 155 GPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADA 214
Query: 281 FL-RPIRKRPNLKVAKRARVTKVLIDEN-----DNLKRATGVEFFKNKQRHTVRARKEVI 334
+L + +R R NL + +RV ++ ++ N + + R E F + +++
Sbjct: 215 WLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFAD----------QIV 264
Query: 335 LSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDL-KVGYNLQDHVSMAGLVFLVNDSV 391
L AGAL SP LLM SGIGP D L+ + + D+ +G NLQDH+ AG ++ V
Sbjct: 265 LCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV 322
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 131/524 (25%), Positives = 226/524 (43%), Gaps = 79/524 (15%)
Query: 645 SNIVQD-TKIFEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREES---LLTDVP 700
S+++ D +K+ K YD+ +LTENP VL++E G ES + + P
Sbjct: 11 SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDP 70
Query: 701 LFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFD 760
+ T + Y T ++++T N GK +GG+++IN ++R D
Sbjct: 71 NAYGQIFGTTVDQNYLT------VPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQID 124
Query: 761 NWE-ALGNPGWSYRDVLPYFKKSE--------DISVSRLKGSPYHGIGGYLKV----EQT 807
+WE G GW++ ++ Y KK+E ++ + HG G ++
Sbjct: 125 SWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQ 184
Query: 808 SWRTPLSAAFLEAGSELGY--DQVDHCENPIGFSYVLAN-KIRGARQSASKAFIRPIRKR 864
W +P+ A + S LG Q C +P G S ++ N R A++A++ P +R
Sbjct: 185 PW-SPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQR 243
Query: 865 HNLKVAKEARVTKILIDPITK--RTYGVEFSKNRK-SYTVKCRKEVILSAGTLNSPQLLM 921
NL++ V K+L + GV F N+ ++ V + EV+L+AG+ SP +L
Sbjct: 244 SNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE 303
Query: 922 LSGVGPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDF 981
SG+G + L++ N+ + DL VG NMQD + T V S+ +
Sbjct: 304 YSGIGLKSVLDQANVTQLLDLPVGINMQDQ------------TTTTVSSRASSA------ 345
Query: 982 LVNGAGPLTLPGGAEALAFYPTKYAE-DPNHPD-MEIVFGPGALTGDSGGSLRKVLGISD 1039
GAG G A A + + + P D + A + G V +
Sbjct: 346 ---GAG----QGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKV 398
Query: 1040 KFYNKVYRPFAEREAYSIVPVLVRPRSR------GFVRLSRGFVKLRSSNPF-----DSP 1088
++ N YR + E + + + + + +RG V + SS+P+ + P
Sbjct: 399 QYEN--YRNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDP 456
Query: 1089 KFYPNYLSDSRDLDVLIEAI--KMAVELSETRAMQKY-ASKLLP 1129
KF+ N + D+L +A K+A +L+ AM++Y A + LP
Sbjct: 457 KFFLN------EFDLLGQAAASKLARDLTSQGAMKEYFAGETLP 494
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 155/355 (43%), Gaps = 55/355 (15%)
Query: 42 KSFAEEYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDF 101
K + YD+I A +LTEN VL++E G
Sbjct: 19 KVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG--------------------- 57
Query: 102 NWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGK 161
E DG N G++ G T NY+ VP + I GK
Sbjct: 58 ----FYESNDGAIIEDPN-----AYGQIFGTTVDQNYLT----VPLINN--RTNNIKAGK 102
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGW-AALGNIGWSFEEVLPYFKKSEDMKT---AELKS-- 215
+GG+++ N +TR D W G GW+++ + Y KK+E +T A+L +
Sbjct: 103 GLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGH 162
Query: 216 ---SPYHGVGGYLKIE-----RPLWRTPLAKCVLDAGHEMGYDIV-DPSEPNAIGFSYVL 266
+ HG G ++ +P W +P+ K +++ +G + D + G S ++
Sbjct: 163 SFNATCHGTNGTVQSGARDNGQP-W-SPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIM 220
Query: 267 ANTG-NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQ-R 324
N N R A+RA+L P +R NL++ V KVL + + +A GV F NK
Sbjct: 221 NNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVN 280
Query: 325 HTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVS 379
V A+ EV+L+AG+ SP +L SGIG + L++ N+ + DL VG N+QD +
Sbjct: 281 FDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTT 335
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 131/493 (26%), Positives = 195/493 (39%), Gaps = 63/493 (12%)
Query: 657 EYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAG---REESLLTDVPLFVSYMVDTDFNW 713
+DF RL ENPN TVL++EAG E+ P + ++ ++W
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 714 GYKTEKDER--FCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWS 771
YKT R + R T RGK +GG+S +NY + G FD WE G W+
Sbjct: 66 AYKTTMVRRDDYERIEKPNT----RGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 772 YRDVLPYFKKSEDISVS-RLKGSPYHGIGG---------YLKVEQTSWRTPLSAAFLEAG 821
+ ++PY +KS RL IGG L E +R L+ A+ G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181
Query: 822 SELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILID 881
L + D + G ++ RG R S S F ++ + N+ + E +++I+
Sbjct: 182 QPLIENIYDGEMD--GLTHCCDTIYRGQR-SGSFLF---VKNKPNITIVPEVHSKRLIIN 235
Query: 882 PITKRTYGVE-FSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQ 940
+ GV + +EVILS G +P+LLMLSG+GP L I I
Sbjct: 236 EADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIV 295
Query: 941 DLK-VGYNMQDH------------LSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAG 987
D + VG N+ DH M ++ V S Y K N +G
Sbjct: 296 DSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNK---------NRSG 346
Query: 988 PLTLPGGAEALAFYP--TKYAE-DPNHPDMEIVFG---PGALTGDSGGSLRKVLGISDKF 1041
P+ G L +P KY E D + + G P + G L V F
Sbjct: 347 PVG--SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAF 404
Query: 1042 YNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDL 1101
P + ++V LVRP S G V L S++PF P N+ ++ D+
Sbjct: 405 QWHFPTP-KTGDHLTVVVDLVRPIS------DPGEVTLNSADPFQQPNINLNFFANDLDI 457
Query: 1102 DVLIEAIKMAVEL 1114
+ E I+ + +L
Sbjct: 458 IAMREGIRFSYDL 470
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 149/371 (40%), Gaps = 58/371 (15%)
Query: 45 AEEYDFIXXXXXXXXXXXANRLTENSNWTVLLLEAG---PEEIILDEIPLFVSHIVSSDF 101
+DF+ A RL EN N TVL++EAG PE+I P + +S +
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKY 63
Query: 102 NWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGK 161
+W Y T MV DY+ P GK
Sbjct: 64 DWAYKTT------------------------------MVRR----DDYERIEKPNT-RGK 88
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYH-- 219
+GG+S NY + G +D W G W+++ ++PY +KS SP
Sbjct: 89 TLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEK 148
Query: 220 -GVGGYLKI-------ERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGN 271
G GG + I E +R L K G + +I D G ++
Sbjct: 149 IGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGE---MDGLTHCCDTIYR 205
Query: 272 GERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARK 331
G+R S +FL ++ +PN+ + +++I+E D + V + + A +
Sbjct: 206 GQR---SGSFLF-VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFF-ADR 260
Query: 332 EVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVNDS 390
EVILS G +P+LLMLSGIGP L I I D + VG NL DH + V V D
Sbjct: 261 EVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDG 319
Query: 391 VTIVELLMLSG 401
+ ++L+ G
Sbjct: 320 FGMDDVLLRHG 330
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 149/302 (49%), Gaps = 30/302 (9%)
Query: 675 RLTENPNWTVLLLEAGREES----LLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQ 730
RLTENPN +VL++E+G ES ++ D+ + + + + Y+T + ++Q
Sbjct: 37 RLTENPNISVLVIESGSYESDRGPIIEDLNAYGD-IFGSSVDHAYETVE-----LATNNQ 90
Query: 731 TCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSYRDVLPYFKKSE------ 783
T G +GG++++N ++R D+WE + GN GW++ +V Y ++E
Sbjct: 91 TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPN 150
Query: 784 --DISVSRLKGSPYHGIGGYLKV---EQTSWRTPLSAAFLEAGSELGYDQVDH--CENPI 836
I+ + HG+ G + + +P+ A + A + G C +P
Sbjct: 151 AKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPH 210
Query: 837 GFSYVLANKIR--GARQSASKAFIRPIRKRHNLKVAKEARVTKILI--DPITKRTYGVEF 892
G S + N + R A++ ++ P +R NL+V V K+L+ + T R GVEF
Sbjct: 211 GVS-MFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEF 269
Query: 893 SKNR-KSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLKVGYNMQDH 951
++ ++ V + EV+L+AG+ SP +L SG+G + LE L I + DL VG N+QD
Sbjct: 270 GTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQ 329
Query: 952 LS 953
+
Sbjct: 330 TT 331
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 150/358 (41%), Gaps = 74/358 (20%)
Query: 49 DFIXXXXXXXXXXXANRLTENSNWTVLLLEAGPEEI----ILDEIPLFVSHIVSSDFNWG 104
D+I A RLTEN N +VL++E+G E I++++ + I S +
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAY-GDIFGSSVDHA 79
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
Y T + NQ I +G +G
Sbjct: 80 YET-----VELATNNQTA---------------------------------LIRSGNGLG 101
Query: 165 GTSVTNYMVYTRGVPHDYDGW-AALGNIGWSFEEVLPYFKKSEDMKTAELK--------S 215
G+++ N +TR D W GN GW+++ V Y ++E + K +
Sbjct: 102 GSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFN 161
Query: 216 SPYHGVGGYLKI---ERPLWRTPLAKCVLDAGHEMG------YDIVDPSE----PNAIGF 262
+ HGV G + + +P+ K ++ A + G + DP PN +
Sbjct: 162 ASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHE 221
Query: 263 SYVLANTGNGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNK 322
V R A+R +L P +RPNL+V V KVL+ +N RA GVEF +K
Sbjct: 222 DQV--------RSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHK 273
Query: 323 -QRHTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVS 379
H V A+ EV+L+AG+ SP +L SGIG + LE + I + DL VG NLQD +
Sbjct: 274 GNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTT 331
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 129/296 (43%), Gaps = 43/296 (14%)
Query: 654 FEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNW 713
E YD+ L+E + VL+LE G SL T P + + F +
Sbjct: 23 LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG---SLPTAYP---NVLTADGFVY 74
Query: 714 GYKTEKD-----ERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNP 768
+ E D ERF +S+ + RG+ +GGTS+IN VY+R + + A G
Sbjct: 75 NLQQEDDGKTPVERF---VSEDGIDNVRGRVLGGTSIINAGVYARA---NTSIYSASG-V 127
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYD- 827
W V ++ ED V K SW++ AFLEAG +
Sbjct: 128 DWDMDLVNQTYEWVEDTIV--------------YKPNSQSWQSVTKTAFLEAGVHPNHGF 173
Query: 828 QVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILID--PITK 885
+DH E NK G R +A + + +NL+V A V KI+ P
Sbjct: 174 SLDHEEGTRITGSTFDNK--GTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLT 229
Query: 886 RTYGVEFSKNRKSYT--VKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVI 939
T + N + V+ + EVI+SAGT+ +PQLL+LSGVGP +L LNIPV+
Sbjct: 230 ATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 160 GKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYH 219
G+V+GGTS+ N VY R Y + + W + V ++ ED + S +
Sbjct: 100 GRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQ 155
Query: 220 GVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASR 279
V +E + P LD HE G I + N G R++A
Sbjct: 156 SVTKTAFLEAGVH--PNHGFSLD--HEEGTRITGSTFDN------------KGTRHAADE 199
Query: 280 AFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF-KNKQRHT--VRARKEVILS 336
+ NL+V A V K++ L ATGV + N H VR++ EVI+S
Sbjct: 200 LLNK--GNSNNLRVGVHASVEKIIFSNAPGLT-ATGVIYRDSNGTPHQAFVRSKGEVIVS 256
Query: 337 AGALNSPQLLMLSGIGPRDHLEEMNIPVI 365
AG + +PQLL+LSG+GP +L +NIPV+
Sbjct: 257 AGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 375 QDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVI 416
Q V G V + ++ +LL+LSG+GP +L +NIPV+
Sbjct: 244 QAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 1030 SLRKVLGISDKFYNKVYR--PFAEREAYSIVPVLVRP---------RSRGFVRLSRGFVK 1078
++ VLGIS+ FY + PF + P P S+ LS G +
Sbjct: 314 TIVTVLGISNDFYQCSFSSLPFT-TPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT 372
Query: 1079 LRSS-NPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLP 1129
L+SS N SP NY S+ DL + +K EL T A++ Y + LP
Sbjct: 373 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 130/296 (43%), Gaps = 43/296 (14%)
Query: 654 FEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNW 713
E YD+ L+E + VL+LE G SL T P + + F +
Sbjct: 23 LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG---SLPTAYP---NVLTADGFVY 74
Query: 714 GYKTEKD-----ERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNP 768
+ E D ERF +S+ + RG+ +GGTS+IN VY+R + + A G
Sbjct: 75 NLQQEDDGKTPVERF---VSEDGIDNVRGRVLGGTSIINAGVYARA---NTSIYSASG-V 127
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYD- 827
W V ++ ED V K SW++ AFLEAG +
Sbjct: 128 DWDMDLVNQTYEWVEDTIV--------------YKPNSQSWQSVTKTAFLEAGVHPNHGF 173
Query: 828 QVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRT 887
+DH E NK G R +A + + +NL+V A V KI+ T
Sbjct: 174 SLDHEEGTRITGSTFDNK--GTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLT 229
Query: 888 -YGVEFSKNRKS---YTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVI 939
GV + + + V+ + EVI+SAGT+ +PQLL+LSGVGP +L LNIPV+
Sbjct: 230 ATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 160 GKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYH 219
G+V+GGTS+ N VY R Y + + W + V ++ ED + S +
Sbjct: 100 GRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQ 155
Query: 220 GVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASR 279
V +E + P LD HE G I + N G R++A
Sbjct: 156 SVTKTAFLEAGVH--PNHGFSLD--HEEGTRITGSTFDN------------KGTRHAADE 199
Query: 280 AFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF-KNKQRHT--VRARKEVILS 336
+ NL+V A V K++ L ATGV + N H VR++ EVI+S
Sbjct: 200 LLNK--GNSNNLRVGVHASVEKIIFSNAPGLT-ATGVIYRDSNGTPHQAFVRSKGEVIVS 256
Query: 337 AGALNSPQLLMLSGIGPRDHLEEMNIPVI 365
AG + +PQLL+LSG+GP +L +NIPV+
Sbjct: 257 AGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 375 QDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVI 416
Q V G V + ++ +LL+LSG+GP +L +NIPV+
Sbjct: 244 QAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 1030 SLRKVLGISDKFYNKVYR--PFAEREAYSIVPVLVRP---------RSRGFVRLSRGFVK 1078
++ VLGIS+ FY + PF + P P S+ LS G +
Sbjct: 314 TIVTVLGISNDFYQCSFSSLPFT-TPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT 372
Query: 1079 LRSS-NPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLP 1129
L+SS N SP NY S+ DL + +K EL T A++ Y + LP
Sbjct: 373 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 127/494 (25%), Positives = 188/494 (38%), Gaps = 109/494 (22%)
Query: 654 FEKEYDFXXXXXXXXXXXXXNRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNW 713
E YD+ L+E + VL+LE G +L T P + + F +
Sbjct: 23 LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG---TLPTAYP---NLLTSDGFIY 74
Query: 714 GYKTEKD-----ERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNP 768
+ E D ERF G + RG+ +GGTS+IN VY+R + F +
Sbjct: 75 NLQQEDDGQTPVERFVSG---DGIDDVRGRVLGGTSMINAGVYARANTKIF----SASGI 127
Query: 769 GWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAG--SELGY 826
W V + ED V K ++ +W++ AFLEAG + G+
Sbjct: 128 EWDMDLVNQTYDWVEDTIV--------------YKPDKQAWQSLTKTAFLEAGVLPDNGF 173
Query: 827 DQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKR 886
+DH N G R ++ + + +NL+VA A V KI+ +
Sbjct: 174 -SLDHEAGTRLTGSTFDNN--GTRHASDELLNK--GDPNNLRVAVHASVEKIIFSSNSSG 228
Query: 887 TYGVEFSKNRKSYT-----VKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVI-Q 940
+ + T V+ EVI+SAG + SPQLL+LSGVGP +L LNIPV+
Sbjct: 229 VTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLS 288
Query: 941 DLKVGYNMQDHLSMAGLVFLVN----SSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAE 996
VG + D+ + N S+VT++ T Y F +LP
Sbjct: 289 HPYVGQFLHDNPRNFINILPPNPIEPSTVTVL--GITSNFYQCSF-------SSLPFSIP 339
Query: 997 ALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPFAEREAYS 1056
AF+P +P +P F F NKV P
Sbjct: 340 PFAFFP-----NPTYPLPNSTFA--------------------HFVNKVPGP-------- 366
Query: 1057 IVPVLVRPRSRGFVRLSRGFVKLRS-SNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELS 1115
LS G + L S S+ +P NY S+S DL + +K EL
Sbjct: 367 ---------------LSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELL 411
Query: 1116 ETRAMQKYASKLLP 1129
+ A++ Y + LP
Sbjct: 412 SSDALKPYKVEDLP 425
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 31/212 (14%)
Query: 160 GKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYH 219
G+V+GGTS+ N VY R + ++A G I W + V + ED
Sbjct: 100 GRVLGGTSMINAGVYARA---NTKIFSASG-IEWDMDLVNQTYDWVEDTIV--------- 146
Query: 220 GVGGYLKIERPLWRTPLAKCVLDAG--HEMGYDIVDPSEPNAIGFSYVLANTGNGERYSA 277
K ++ W++ L+AG + G+ + + G ++ NG R+ A
Sbjct: 147 -----YKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTF----DNNGTRH-A 196
Query: 278 SRAFLRPIRKRPN-LKVAKRARVTKVLIDENDNLKRATGVEFFKNK---QRHTVRARKEV 333
S L + PN L+VA A V K++ N + A GV + + + VR EV
Sbjct: 197 SDELLN--KGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEV 254
Query: 334 ILSAGALNSPQLLMLSGIGPRDHLEEMNIPVI 365
I+SAG + SPQLL+LSG+GP +L +NIPV+
Sbjct: 255 IVSAGPIGSPQLLLLSGVGPESYLSSLNIPVV 286
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGW--SFEEVLPYFKKSEDMKTAELKSSPYH 219
V GGTSV + + P+D D ++GW S+ PY K ++ L S+ +
Sbjct: 93 VGGGTSVNGALYW---YPNDGD---FSSSVGWPSSWTNHAPYTSK----LSSRLPSTDHP 142
Query: 220 GVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASR 279
G +E+ +++ + G+ +P+ + + F Y + NG+R
Sbjct: 143 STDGQRYLEQSF--NVVSQLLKGQGYNQATINDNPNYKDHV-FGYSAFDFLNGKRAGPVA 199
Query: 280 AFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGA 339
+L+ RPN V+ V+ + + L T V + VILSAGA
Sbjct: 200 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGA 259
Query: 340 LNSPQLLMLSGIGPRDHLEEMNI---------PVIQ--DLKVGYNLQDHVSMAGLVF 385
+ ++L SGIGP D ++ + P Q +L VG N QD+ S+ LVF
Sbjct: 260 FGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVF 315
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 58/286 (20%)
Query: 698 DVP-LFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVP 756
D+P LF S D++ W +C+ ++ G +GG + +N +Y P
Sbjct: 64 DIPGLFESLFTDSNPFW---------WCKDITVFA-----GCLVGGGTSVNGALY--WYP 107
Query: 757 QDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAA 816
D D ++G P S+ + PY K SRL + + G +EQ+
Sbjct: 108 NDGDFSSSVGWPS-SWTNHAPYTSKLS----SRLPSTDHPSTDGQRYLEQS--------- 153
Query: 817 FLEAGSEL----GYDQVDHCENPI----GFSYVLANKIRGARQSASKAFIRPIRKRHNLK 868
S+L GY+Q +NP F Y + + G R +++ R N
Sbjct: 154 -FNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFT 212
Query: 869 VAKEARVTKILIDPITKRTYGVEFSKNRKS----YTVKCRKEVILSAGTLNSPQLLMLSG 924
V+ ++ + + GV+ + V + VILSAG + ++L SG
Sbjct: 213 FKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSG 270
Query: 925 VGPRPHLEELNI---------PVIQ--DLKVGYNMQDHLSMAGLVF 959
+GP ++ + P Q +L VG N QD+ S+ LVF
Sbjct: 271 IGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVF 315
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGW--SFEEVLPYFKKSEDMKTAELKSSPYH 219
V GGTSV + + P+D D ++GW S+ PY K ++ L S+ +
Sbjct: 88 VGGGTSVNGALYW---YPNDGD---FSSSVGWPSSWTNHAPYTSK----LSSRLPSTDHP 137
Query: 220 GVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASR 279
G +E+ +++ + G+ +P+ + + F Y + NG+R
Sbjct: 138 STDGQRYLEQSF--NVVSQLLKGQGYNQATINDNPNYKDHV-FGYSAFDFLNGKRAGPVA 194
Query: 280 AFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGA 339
+L+ RPN V+ V+ + + L T V + VILSAGA
Sbjct: 195 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGA 254
Query: 340 LNSPQLLMLSGIGPRDHLEEMNI---------PVIQ--DLKVGYNLQDHVSMAGLVF 385
+ ++L SGIGP D ++ + P Q +L VG N QD+ S+ LVF
Sbjct: 255 FGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVF 310
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 43/246 (17%)
Query: 737 GKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYH 796
G +GG + +N +Y P D D ++G P S+ + PY K SRL + +
Sbjct: 85 GCLVGGGTSVNGALYWY--PNDGDFSSSVGWPS-SWTNHAPYTSKLS----SRLPSTDHP 137
Query: 797 GIGGYLKVEQTSWRTPLSAAFLEAGSEL----GYDQVDHCENPI----GFSYVLANKIRG 848
G +EQ+ S+L GY+Q +NP F Y + + G
Sbjct: 138 STDGQRYLEQS----------FNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNG 187
Query: 849 ARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKS----YTVKCR 904
R +++ R N V+ ++ + + GV+ + V +
Sbjct: 188 KRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPK 245
Query: 905 KEVILSAGTLNSPQLLMLSGVGPRPHLEELNI---------PVIQ--DLKVGYNMQDHLS 953
VILSAG + ++L SG+GP ++ + P Q +L VG N QD+ S
Sbjct: 246 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPS 305
Query: 954 MAGLVF 959
+ LVF
Sbjct: 306 I-NLVF 310
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From Pseudomonas
Aeruginosa Pao1 (Target Nysgrc-200449) With Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From Pseudomonas
Aeruginosa Pao1 (Target Nysgrc-200449) With Bound Zn
Length = 451
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 978 LMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGI 1037
++DF + GA AEA+ + + +HP + I FGP A S L ++L +
Sbjct: 156 VLDFPIPGA-----RDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVL 210
Query: 1038 SDKFYNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSR-GFVKLRSSNPFDSPKFYPNYLS 1096
+++ + E A+ + + R R RL R G + P+F +++
Sbjct: 211 TEELDASIQMHVHE-TAFEVEQAMERNGERPLARLHRLGLL---------GPRFQAVHMT 260
Query: 1097 --DSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVK 1131
D+ DL +L+E + E+ K AS PV+
Sbjct: 261 QVDNDDLAMLVETNSSVIHCPESNL--KLASGFCPVE 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,719,883
Number of Sequences: 62578
Number of extensions: 1553898
Number of successful extensions: 3272
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3139
Number of HSP's gapped (non-prelim): 68
length of query: 1183
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1073
effective length of database: 8,089,757
effective search space: 8680309261
effective search space used: 8680309261
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)