Query psy8892
Match_columns 1183
No_of_seqs 605 out of 4719
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 22:06:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 4.7E-92 1E-96 805.7 39.5 513 655-1179 55-572 (623)
2 KOG1238|consensus 100.0 2.4E-79 5.2E-84 701.1 43.0 519 43-653 53-599 (623)
3 TIGR01810 betA choline dehydro 100.0 9.1E-67 2E-71 634.9 43.2 476 659-1179 1-486 (532)
4 PRK02106 choline dehydrogenase 100.0 1.9E-66 4.1E-71 635.3 44.8 479 654-1179 2-491 (560)
5 PRK02106 choline dehydrogenase 100.0 1.3E-63 2.8E-68 610.3 48.2 493 44-653 2-518 (560)
6 TIGR01810 betA choline dehydro 100.0 1.3E-62 2.7E-67 598.6 47.3 488 49-653 1-513 (532)
7 COG2303 BetA Choline dehydroge 100.0 2.8E-59 6.1E-64 561.7 33.6 478 654-1178 4-492 (542)
8 PLN02785 Protein HOTHEAD 100.0 7.3E-58 1.6E-62 551.8 37.2 470 635-1168 32-531 (587)
9 COG2303 BetA Choline dehydroge 100.0 1.3E-55 2.8E-60 530.1 35.7 492 43-653 3-520 (542)
10 PLN02785 Protein HOTHEAD 100.0 1.6E-54 3.5E-59 522.8 39.1 477 43-653 51-563 (587)
11 PF00732 GMC_oxred_N: GMC oxid 100.0 1.2E-45 2.5E-50 418.5 15.8 288 658-952 1-295 (296)
12 PF00732 GMC_oxred_N: GMC oxid 100.0 1E-42 2.2E-47 394.5 15.5 289 48-378 1-295 (296)
13 TIGR02462 pyranose_ox pyranose 100.0 4.8E-37 1.1E-41 362.3 31.0 502 48-678 1-537 (544)
14 TIGR02462 pyranose_ox pyranose 100.0 2.6E-27 5.5E-32 280.0 32.2 438 658-1179 1-499 (544)
15 PF05199 GMC_oxred_C: GMC oxid 99.8 6.8E-19 1.5E-23 176.4 10.7 111 541-653 1-135 (144)
16 PF05199 GMC_oxred_C: GMC oxid 99.7 3E-17 6.5E-22 164.5 7.7 107 1064-1179 1-108 (144)
17 PRK07121 hypothetical protein; 99.4 1.4E-11 3.1E-16 149.3 19.6 64 281-347 182-245 (492)
18 PRK12845 3-ketosteroid-delta-1 99.4 5.7E-12 1.2E-16 153.4 15.7 62 857-920 222-283 (564)
19 PRK12835 3-ketosteroid-delta-1 99.4 5.1E-12 1.1E-16 154.9 15.1 64 857-921 218-281 (584)
20 PRK07121 hypothetical protein; 99.3 2.4E-11 5.3E-16 147.3 19.5 65 857-922 182-246 (492)
21 PRK12835 3-ketosteroid-delta-1 99.3 3.2E-11 7E-16 147.9 18.0 64 281-347 218-282 (584)
22 PRK12844 3-ketosteroid-delta-1 99.3 1.9E-11 4.1E-16 149.4 14.5 63 857-921 213-275 (557)
23 PRK12837 3-ketosteroid-delta-1 99.3 4.1E-11 8.9E-16 145.4 16.8 64 856-921 178-242 (513)
24 PRK12845 3-ketosteroid-delta-1 99.3 5.6E-11 1.2E-15 144.8 17.8 56 285-344 226-281 (564)
25 PRK12837 3-ketosteroid-delta-1 99.3 7.6E-11 1.6E-15 143.2 18.3 63 281-347 179-242 (513)
26 PF00890 FAD_binding_2: FAD bi 99.3 2.9E-11 6.4E-16 144.2 14.4 61 857-921 146-208 (417)
27 PRK08274 tricarballylate dehyd 99.3 5.1E-11 1.1E-15 143.9 16.2 67 857-926 136-203 (466)
28 PRK06481 fumarate reductase fl 99.2 1.4E-10 2.9E-15 140.7 17.9 60 283-347 197-258 (506)
29 PF00890 FAD_binding_2: FAD bi 99.2 5E-11 1.1E-15 142.2 13.9 60 282-347 147-208 (417)
30 PRK08274 tricarballylate dehyd 99.2 1.2E-10 2.7E-15 140.6 17.0 66 282-352 137-203 (466)
31 PRK06481 fumarate reductase fl 99.2 1.2E-10 2.7E-15 141.1 16.2 60 858-920 196-256 (506)
32 PRK12844 3-ketosteroid-delta-1 99.2 1.2E-10 2.7E-15 142.3 15.2 61 282-346 214-274 (557)
33 PRK07843 3-ketosteroid-delta-1 99.2 1.8E-10 3.9E-15 141.1 15.7 63 858-922 214-276 (557)
34 PRK06175 L-aspartate oxidase; 99.2 2.4E-10 5.2E-15 135.6 15.6 57 857-916 134-190 (433)
35 PRK07573 sdhA succinate dehydr 99.2 2.7E-10 6E-15 140.9 16.1 54 860-916 178-233 (640)
36 PRK07395 L-aspartate oxidase; 99.2 1.8E-10 3.9E-15 140.3 14.0 54 862-916 145-198 (553)
37 PRK07804 L-aspartate oxidase; 99.2 3.2E-10 6.9E-15 138.4 15.4 58 857-916 149-211 (541)
38 PRK08958 sdhA succinate dehydr 99.1 3.6E-10 7.8E-15 138.8 15.6 58 857-916 148-207 (588)
39 PRK12834 putative FAD-binding 99.1 5.8E-10 1.3E-14 136.8 17.4 36 655-691 2-37 (549)
40 PRK06175 L-aspartate oxidase; 99.1 4.3E-10 9.3E-15 133.5 15.6 57 281-342 134-190 (433)
41 PTZ00306 NADH-dependent fumara 99.1 2.7E-10 5.9E-15 150.0 15.1 66 625-692 375-443 (1167)
42 PRK11101 glpA sn-glycerol-3-ph 99.1 5.9E-10 1.3E-14 136.2 16.8 61 861-925 158-220 (546)
43 PRK12843 putative FAD-binding 99.1 6.6E-10 1.4E-14 136.7 17.3 62 858-921 227-288 (578)
44 PRK06452 sdhA succinate dehydr 99.1 4.5E-10 9.8E-15 137.6 15.8 55 858-915 142-198 (566)
45 PLN00128 Succinate dehydrogena 99.1 7.5E-10 1.6E-14 136.5 17.4 58 858-917 193-252 (635)
46 PRK12843 putative FAD-binding 99.1 1.3E-09 2.8E-14 134.2 19.3 62 282-347 227-289 (578)
47 PRK11101 glpA sn-glycerol-3-ph 99.1 4.7E-10 1E-14 137.0 15.1 59 286-350 159-219 (546)
48 PRK07843 3-ketosteroid-delta-1 99.1 6.5E-10 1.4E-14 136.2 15.9 63 282-348 214-276 (557)
49 PRK06263 sdhA succinate dehydr 99.1 1.1E-09 2.4E-14 134.1 17.9 57 858-916 140-198 (543)
50 PRK09078 sdhA succinate dehydr 99.1 1E-09 2.3E-14 135.2 16.7 58 857-916 154-213 (598)
51 PTZ00139 Succinate dehydrogena 99.1 1E-09 2.3E-14 135.4 16.7 58 857-916 171-230 (617)
52 TIGR01813 flavo_cyto_c flavocy 99.1 9.7E-10 2.1E-14 131.8 15.8 64 855-920 133-197 (439)
53 PLN02815 L-aspartate oxidase 99.1 5.4E-10 1.2E-14 136.5 13.7 55 861-916 165-223 (594)
54 TIGR01813 flavo_cyto_c flavocy 99.1 1.4E-09 3E-14 130.5 16.7 59 281-343 135-194 (439)
55 PRK08641 sdhA succinate dehydr 99.1 1.5E-09 3.2E-14 133.6 17.2 49 866-916 151-201 (589)
56 PRK07804 L-aspartate oxidase; 99.1 2.2E-09 4.7E-14 131.1 18.3 47 34-81 3-49 (541)
57 PRK12834 putative FAD-binding 99.1 1.5E-09 3.3E-14 133.1 17.1 37 44-81 1-37 (549)
58 PRK12839 hypothetical protein; 99.1 3E-09 6.4E-14 130.2 18.9 58 284-344 222-279 (572)
59 PRK06134 putative FAD-binding 99.1 3.8E-09 8.2E-14 130.1 19.6 61 282-346 223-283 (581)
60 COG2081 Predicted flavoprotein 99.1 5.6E-10 1.2E-14 123.3 10.8 113 814-943 81-193 (408)
61 PRK12842 putative succinate de 99.1 1.5E-09 3.2E-14 133.8 15.5 62 858-921 220-281 (574)
62 PRK05945 sdhA succinate dehydr 99.1 1.5E-09 3.1E-14 133.8 15.1 57 857-916 140-198 (575)
63 PRK12842 putative succinate de 99.1 2.4E-09 5.3E-14 131.9 17.1 59 285-347 223-281 (574)
64 PRK06134 putative FAD-binding 99.0 2.2E-09 4.7E-14 132.3 16.6 63 857-921 222-284 (581)
65 PRK06452 sdhA succinate dehydr 99.0 2.6E-09 5.7E-14 130.9 17.3 51 286-341 146-198 (566)
66 PF01266 DAO: FAD dependent ox 99.0 3.5E-10 7.5E-15 132.1 8.9 60 282-351 153-212 (358)
67 PLN02815 L-aspartate oxidase 99.0 2.7E-09 5.8E-14 130.5 16.7 58 283-341 163-222 (594)
68 PRK12839 hypothetical protein; 99.0 1.8E-09 4E-14 132.0 15.3 62 858-920 220-281 (572)
69 PRK07395 L-aspartate oxidase; 99.0 2E-09 4.4E-14 131.1 15.6 54 286-342 145-198 (553)
70 PRK07057 sdhA succinate dehydr 99.0 2.9E-09 6.2E-14 131.2 17.0 57 858-916 154-212 (591)
71 TIGR01373 soxB sarcosine oxida 99.0 1.6E-09 3.5E-14 128.7 14.1 60 19-81 5-65 (407)
72 PLN00128 Succinate dehydrogena 99.0 4.1E-09 8.8E-14 130.1 17.5 53 286-342 197-251 (635)
73 PRK08626 fumarate reductase fl 99.0 2.3E-09 5E-14 133.0 15.3 56 858-916 164-221 (657)
74 PRK06263 sdhA succinate dehydr 99.0 5.4E-09 1.2E-13 128.1 18.1 57 282-342 140-198 (543)
75 PF01266 DAO: FAD dependent ox 99.0 2E-09 4.3E-14 125.7 13.6 63 855-925 150-212 (358)
76 PRK08958 sdhA succinate dehydr 99.0 3.9E-09 8.5E-14 129.7 16.5 54 285-342 152-207 (588)
77 PRK07573 sdhA succinate dehydr 99.0 5.3E-09 1.1E-13 129.6 17.6 53 285-342 179-233 (640)
78 PRK07803 sdhA succinate dehydr 99.0 2.9E-09 6.2E-14 131.9 15.2 47 867-916 166-214 (626)
79 PRK06854 adenylylsulfate reduc 99.0 3.7E-09 8.1E-14 130.4 16.1 55 858-915 138-195 (608)
80 PTZ00139 Succinate dehydrogena 99.0 5.5E-09 1.2E-13 129.0 17.4 56 282-342 172-230 (617)
81 TIGR01812 sdhA_frdA_Gneg succi 99.0 3.4E-09 7.4E-14 130.9 15.0 57 857-916 134-192 (566)
82 PRK09078 sdhA succinate dehydr 99.0 2.4E-09 5.1E-14 132.1 13.6 57 282-342 155-213 (598)
83 PRK09077 L-aspartate oxidase; 99.0 3.3E-09 7.1E-14 129.5 14.6 55 861-916 148-208 (536)
84 COG0579 Predicted dehydrogenas 99.0 6.1E-09 1.3E-13 119.5 15.5 203 656-927 2-222 (429)
85 PTZ00306 NADH-dependent fumara 99.0 8.7E-09 1.9E-13 136.0 19.2 56 288-344 559-623 (1167)
86 TIGR00551 nadB L-aspartate oxi 99.0 6.4E-09 1.4E-13 125.8 16.5 57 857-916 133-190 (488)
87 PRK09231 fumarate reductase fl 99.0 2.7E-09 5.9E-14 131.1 13.4 53 861-916 143-197 (582)
88 PRK08275 putative oxidoreducta 99.0 4.4E-09 9.4E-14 129.1 15.1 58 856-915 141-200 (554)
89 PRK08205 sdhA succinate dehydr 99.0 6.6E-09 1.4E-13 128.1 16.7 60 856-916 144-207 (583)
90 TIGR01176 fum_red_Fp fumarate 99.0 3.4E-09 7.4E-14 129.9 14.0 52 862-916 143-196 (580)
91 PRK05945 sdhA succinate dehydr 99.0 6.8E-09 1.5E-13 127.9 16.7 56 282-342 141-198 (575)
92 PTZ00383 malate:quinone oxidor 99.0 4.2E-09 9E-14 125.6 14.2 53 291-353 232-284 (497)
93 PRK12409 D-amino acid dehydrog 99.0 3.7E-09 8.1E-14 125.8 13.4 33 48-81 2-34 (410)
94 COG0579 Predicted dehydrogenas 99.0 1E-08 2.2E-13 117.8 16.0 121 223-354 90-223 (429)
95 PF03486 HI0933_like: HI0933-l 99.0 7.3E-10 1.6E-14 128.8 6.8 113 815-943 80-192 (409)
96 TIGR00551 nadB L-aspartate oxi 98.9 1.3E-08 2.8E-13 123.2 17.4 50 288-342 141-190 (488)
97 TIGR02061 aprA adenosine phosp 98.9 9.8E-09 2.1E-13 125.5 16.2 57 858-915 132-191 (614)
98 TIGR01811 sdhA_Bsu succinate d 98.9 8E-09 1.7E-13 127.3 15.0 51 864-916 145-197 (603)
99 PRK06069 sdhA succinate dehydr 98.9 9.2E-09 2E-13 126.9 15.4 51 862-915 148-200 (577)
100 COG2081 Predicted flavoprotein 98.9 2.8E-09 6E-14 117.9 9.4 36 46-82 2-37 (408)
101 PRK07512 L-aspartate oxidase; 98.9 7.3E-09 1.6E-13 125.7 14.1 50 863-915 148-197 (513)
102 PRK07057 sdhA succinate dehydr 98.9 1.4E-08 3.1E-13 125.0 16.8 53 286-342 158-212 (591)
103 PRK08071 L-aspartate oxidase; 98.9 8.2E-09 1.8E-13 125.1 14.4 49 865-916 142-191 (510)
104 PRK08626 fumarate reductase fl 98.9 1E-08 2.2E-13 127.3 15.1 54 284-342 166-221 (657)
105 PRK09231 fumarate reductase fl 98.9 1.9E-08 4.1E-13 123.7 17.1 53 285-342 143-197 (582)
106 TIGR01812 sdhA_frdA_Gneg succi 98.9 2.2E-08 4.7E-13 123.8 17.2 53 285-342 138-192 (566)
107 PRK08641 sdhA succinate dehydr 98.9 2.8E-08 6E-13 122.5 18.1 49 290-342 151-201 (589)
108 PRK07803 sdhA succinate dehydr 98.9 2.4E-08 5.1E-13 123.9 17.3 47 291-342 166-214 (626)
109 PF03486 HI0933_like: HI0933-l 98.9 2.1E-09 4.5E-14 125.0 7.3 56 281-344 114-169 (409)
110 TIGR01176 fum_red_Fp fumarate 98.9 2.5E-08 5.3E-13 122.4 16.9 52 286-342 143-196 (580)
111 PRK06854 adenylylsulfate reduc 98.9 2.7E-08 5.9E-13 122.9 17.3 50 287-341 144-195 (608)
112 PRK06069 sdhA succinate dehydr 98.9 2.6E-08 5.5E-13 123.0 16.7 51 286-341 148-200 (577)
113 PRK07512 L-aspartate oxidase; 98.9 2.4E-08 5.2E-13 121.2 16.1 51 287-342 148-198 (513)
114 PRK08071 L-aspartate oxidase; 98.9 2.4E-08 5.3E-13 121.1 16.0 49 289-342 142-191 (510)
115 PRK09077 L-aspartate oxidase; 98.9 3.7E-08 8.1E-13 120.3 17.6 55 285-342 148-208 (536)
116 PRK08205 sdhA succinate dehydr 98.9 3.5E-08 7.6E-13 121.7 17.3 58 281-342 145-207 (583)
117 PRK12409 D-amino acid dehydrog 98.9 3.2E-08 6.9E-13 117.8 16.3 34 658-692 2-35 (410)
118 COG0578 GlpA Glycerol-3-phosph 98.9 5.5E-08 1.2E-12 113.8 17.6 76 862-942 174-254 (532)
119 PRK08275 putative oxidoreducta 98.9 2.7E-08 5.8E-13 122.2 15.8 57 281-341 142-200 (554)
120 PRK13800 putative oxidoreducta 98.9 3.1E-08 6.6E-13 128.1 16.9 49 864-915 155-205 (897)
121 PRK11728 hydroxyglutarate oxid 98.8 3.5E-08 7.5E-13 116.6 16.0 60 282-352 155-214 (393)
122 TIGR03329 Phn_aa_oxid putative 98.8 1.1E-08 2.3E-13 123.2 11.8 37 45-81 22-59 (460)
123 PLN02661 Putative thiazole syn 98.8 2E-08 4.3E-13 112.1 12.5 35 47-81 92-126 (357)
124 PRK04176 ribulose-1,5-biphosph 98.8 2.6E-08 5.7E-13 109.1 13.1 56 858-915 110-173 (257)
125 PRK05257 malate:quinone oxidor 98.8 2.5E-08 5.3E-13 119.6 13.8 37 45-81 3-40 (494)
126 PLN02661 Putative thiazole syn 98.8 3.1E-08 6.8E-13 110.6 12.9 57 856-915 177-244 (357)
127 TIGR01373 soxB sarcosine oxida 98.8 2.4E-08 5.1E-13 118.8 12.9 61 858-925 189-249 (407)
128 TIGR01377 soxA_mon sarcosine o 98.8 4E-08 8.6E-13 115.9 14.7 33 48-81 1-33 (380)
129 PF01946 Thi4: Thi4 family; PD 98.8 4.5E-08 9.8E-13 99.8 12.7 35 656-691 16-50 (230)
130 TIGR01320 mal_quin_oxido malat 98.8 5.5E-08 1.2E-12 116.6 15.6 63 285-353 187-251 (483)
131 TIGR00292 thiazole biosynthesi 98.8 3.4E-08 7.4E-13 107.8 12.5 65 857-922 105-178 (254)
132 COG1053 SdhA Succinate dehydro 98.8 2.3E-08 5.1E-13 120.4 12.1 86 862-954 149-241 (562)
133 PRK00711 D-amino acid dehydrog 98.8 4E-08 8.7E-13 117.3 14.0 54 284-347 209-262 (416)
134 PLN02464 glycerol-3-phosphate 98.8 3.3E-08 7.1E-13 122.3 13.5 60 285-349 241-303 (627)
135 PRK11259 solA N-methyltryptoph 98.8 9.4E-08 2E-12 112.5 16.6 35 46-81 2-36 (376)
136 TIGR01811 sdhA_Bsu succinate d 98.8 6.2E-08 1.3E-12 119.5 15.5 52 287-342 144-197 (603)
137 PTZ00383 malate:quinone oxidor 98.8 3.3E-08 7.2E-13 118.0 12.7 54 865-926 228-283 (497)
138 PRK11728 hydroxyglutarate oxid 98.8 5.8E-08 1.3E-12 114.7 14.6 60 857-925 154-213 (393)
139 TIGR03329 Phn_aa_oxid putative 98.8 1.3E-08 2.9E-13 122.4 9.1 37 655-691 22-59 (460)
140 TIGR02485 CobZ_N-term precorri 98.8 5.4E-08 1.2E-12 116.3 14.0 62 857-921 128-189 (432)
141 PRK04176 ribulose-1,5-biphosph 98.8 5.1E-08 1.1E-12 106.8 12.3 34 47-81 25-58 (257)
142 TIGR02061 aprA adenosine phosp 98.8 1.4E-07 3E-12 115.5 17.3 52 287-341 137-191 (614)
143 TIGR01377 soxA_mon sarcosine o 98.8 8.7E-08 1.9E-12 113.0 15.0 33 658-691 1-33 (380)
144 PRK08401 L-aspartate oxidase; 98.8 7.5E-08 1.6E-12 115.8 14.6 52 857-916 125-176 (466)
145 COG0029 NadB Aspartate oxidase 98.7 9E-08 1.9E-12 108.4 13.8 59 855-915 137-196 (518)
146 PRK00711 D-amino acid dehydrog 98.7 6E-08 1.3E-12 115.8 13.5 59 858-924 207-265 (416)
147 COG1635 THI4 Ribulose 1,5-bisp 98.7 8E-08 1.7E-12 96.9 11.9 35 656-691 29-63 (262)
148 COG0578 GlpA Glycerol-3-phosph 98.7 2E-07 4.4E-12 109.2 17.1 75 287-368 175-254 (532)
149 TIGR03364 HpnW_proposed FAD de 98.7 9.1E-08 2E-12 112.1 13.7 33 48-81 1-33 (365)
150 PRK13800 putative oxidoreducta 98.7 8E-08 1.7E-12 124.2 14.4 49 289-342 156-206 (897)
151 COG1635 THI4 Ribulose 1,5-bisp 98.7 5.8E-08 1.3E-12 97.9 10.0 34 47-81 30-63 (262)
152 PRK12266 glpD glycerol-3-phosp 98.7 2.5E-07 5.3E-12 112.4 17.6 37 44-81 3-39 (508)
153 PLN02464 glycerol-3-phosphate 98.7 1.4E-07 3E-12 116.8 15.5 79 860-940 240-321 (627)
154 KOG2820|consensus 98.7 8.6E-08 1.9E-12 102.6 11.5 62 281-349 158-219 (399)
155 PRK13369 glycerol-3-phosphate 98.7 1.6E-07 3.6E-12 114.1 15.7 37 44-81 3-39 (502)
156 TIGR01320 mal_quin_oxido malat 98.7 1.3E-07 2.9E-12 113.3 14.5 65 858-926 184-250 (483)
157 PRK08401 L-aspartate oxidase; 98.7 1.8E-07 3.9E-12 112.5 15.7 33 48-81 2-34 (466)
158 PRK13339 malate:quinone oxidor 98.7 2.9E-07 6.2E-12 109.6 16.9 67 281-353 190-258 (497)
159 PF01946 Thi4: Thi4 family; PD 98.7 5E-08 1.1E-12 99.5 7.9 35 46-81 16-50 (230)
160 PRK05257 malate:quinone oxidor 98.7 2.2E-07 4.7E-12 111.6 14.9 65 858-926 189-256 (494)
161 COG1053 SdhA Succinate dehydro 98.7 1.8E-07 3.8E-12 112.9 14.0 53 285-341 148-202 (562)
162 TIGR00292 thiazole biosynthesi 98.6 1.3E-07 2.8E-12 103.3 11.2 34 47-81 21-54 (254)
163 PF12831 FAD_oxidored: FAD dep 98.6 3.2E-08 7E-13 117.6 6.5 64 281-352 95-158 (428)
164 TIGR02485 CobZ_N-term precorri 98.6 3.2E-07 6.9E-12 109.7 13.7 61 281-347 128-189 (432)
165 PRK10157 putative oxidoreducta 98.6 1.9E-07 4.2E-12 111.0 11.6 35 46-81 4-38 (428)
166 PRK12266 glpD glycerol-3-phosp 98.6 5.6E-07 1.2E-11 109.3 15.7 61 861-926 164-227 (508)
167 PRK13369 glycerol-3-phosphate 98.6 2.3E-07 5.1E-12 112.7 11.7 61 860-925 163-225 (502)
168 PF12831 FAD_oxidored: FAD dep 98.6 3.4E-08 7.3E-13 117.4 4.2 63 857-925 95-157 (428)
169 COG0029 NadB Aspartate oxidase 98.6 9.5E-07 2.1E-11 100.3 15.3 57 280-340 138-195 (518)
170 PRK11259 solA N-methyltryptoph 98.6 6.9E-07 1.5E-11 105.2 14.7 34 657-691 3-36 (376)
171 PRK01747 mnmC bifunctional tRN 98.5 5.8E-07 1.3E-11 113.2 14.0 34 47-81 260-293 (662)
172 PRK13977 myosin-cross-reactive 98.5 2.6E-06 5.6E-11 101.2 18.1 61 282-342 232-294 (576)
173 PRK13339 malate:quinone oxidor 98.5 1.5E-06 3.3E-11 103.5 16.1 66 857-926 190-257 (497)
174 COG3380 Predicted NAD/FAD-depe 98.5 6.4E-07 1.4E-11 93.2 11.0 81 290-378 117-212 (331)
175 COG3573 Predicted oxidoreducta 98.5 5.6E-07 1.2E-11 95.5 10.6 67 278-349 155-236 (552)
176 COG0644 FixC Dehydrogenases (f 98.5 4.5E-07 9.8E-12 107.0 11.2 37 656-693 2-38 (396)
177 COG0644 FixC Dehydrogenases (f 98.5 8.7E-07 1.9E-11 104.6 13.2 36 46-82 2-37 (396)
178 COG1233 Phytoene dehydrogenase 98.5 2.3E-07 5E-12 111.9 8.4 39 656-695 2-40 (487)
179 TIGR03364 HpnW_proposed FAD de 98.5 5.8E-07 1.3E-11 105.2 11.6 33 658-691 1-33 (365)
180 PRK05192 tRNA uridine 5-carbox 98.5 8.2E-07 1.8E-11 106.5 12.6 36 45-81 2-37 (618)
181 PTZ00363 rab-GDP dissociation 98.5 2.1E-06 4.6E-11 101.1 15.6 41 654-695 1-41 (443)
182 PRK13977 myosin-cross-reactive 98.5 1E-06 2.2E-11 104.7 12.6 60 858-917 232-295 (576)
183 PRK10157 putative oxidoreducta 98.5 7.9E-07 1.7E-11 105.8 11.9 65 853-926 109-173 (428)
184 PRK10015 oxidoreductase; Provi 98.4 5.6E-07 1.2E-11 107.0 9.6 36 46-82 4-39 (429)
185 PRK05192 tRNA uridine 5-carbox 98.4 1.1E-06 2.3E-11 105.5 11.2 36 655-691 2-37 (618)
186 PTZ00363 rab-GDP dissociation 98.4 2.4E-06 5.1E-11 100.8 13.6 39 44-83 1-39 (443)
187 COG0665 DadA Glycine/D-amino a 98.4 8.2E-07 1.8E-11 105.0 9.6 36 45-81 2-37 (387)
188 TIGR02730 carot_isom carotene 98.4 6.2E-07 1.3E-11 109.1 8.6 58 282-347 235-292 (493)
189 PRK10015 oxidoreductase; Provi 98.4 1E-06 2.2E-11 104.8 9.9 36 656-692 4-39 (429)
190 COG1233 Phytoene dehydrogenase 98.4 6.8E-07 1.5E-11 107.9 8.5 38 46-84 2-39 (487)
191 KOG4254|consensus 98.4 4.7E-07 1E-11 100.4 6.2 60 857-922 269-328 (561)
192 KOG2844|consensus 98.4 9.6E-07 2.1E-11 102.2 9.0 52 281-341 192-243 (856)
193 TIGR02730 carot_isom carotene 98.4 1.1E-06 2.4E-11 106.9 9.9 58 857-920 234-291 (493)
194 PRK01747 mnmC bifunctional tRN 98.3 1.9E-06 4.1E-11 108.6 11.4 34 657-691 260-293 (662)
195 KOG0042|consensus 98.3 2.1E-07 4.6E-12 105.1 2.6 85 832-922 207-293 (680)
196 TIGR03378 glycerol3P_GlpB glyc 98.3 2.6E-06 5.7E-11 98.1 11.2 62 282-349 269-330 (419)
197 PF13738 Pyr_redox_3: Pyridine 98.3 7.9E-07 1.7E-11 94.7 6.3 61 281-350 87-147 (203)
198 PLN02172 flavin-containing mon 98.3 4.3E-06 9.3E-11 99.7 13.1 38 44-82 7-44 (461)
199 COG0665 DadA Glycine/D-amino a 98.3 2.2E-06 4.8E-11 101.3 10.7 37 655-692 2-38 (387)
200 COG3573 Predicted oxidoreducta 98.3 4.3E-06 9.3E-11 89.0 11.0 68 853-923 154-236 (552)
201 TIGR02734 crtI_fam phytoene de 98.3 1.2E-06 2.5E-11 107.3 8.1 59 857-921 224-282 (502)
202 PRK06185 hypothetical protein; 98.3 8.9E-06 1.9E-10 96.8 15.3 65 857-926 113-178 (407)
203 KOG2844|consensus 98.3 1.3E-06 2.8E-11 101.2 7.6 198 656-925 38-252 (856)
204 KOG2415|consensus 98.3 2.8E-06 6E-11 93.1 9.7 72 276-351 183-268 (621)
205 PRK06185 hypothetical protein; 98.3 5.9E-06 1.3E-10 98.3 13.6 37 44-81 3-39 (407)
206 KOG2415|consensus 98.3 3.5E-06 7.5E-11 92.3 10.3 74 850-925 181-268 (621)
207 KOG2404|consensus 98.3 3.2E-06 7E-11 89.6 9.3 48 866-916 159-207 (477)
208 PF06039 Mqo: Malate:quinone o 98.2 7.2E-06 1.6E-10 93.1 12.4 69 281-353 187-255 (488)
209 PF06039 Mqo: Malate:quinone o 98.2 3.2E-06 6.9E-11 95.9 9.5 68 857-926 187-254 (488)
210 COG3380 Predicted NAD/FAD-depe 98.2 3.9E-06 8.4E-11 87.6 9.1 89 865-960 116-219 (331)
211 PRK07364 2-octaprenyl-6-methox 98.2 6.4E-06 1.4E-10 98.3 12.6 38 43-81 14-51 (415)
212 PF13738 Pyr_redox_3: Pyridine 98.2 3E-06 6.5E-11 90.2 8.0 63 855-924 85-147 (203)
213 TIGR00275 flavoprotein, HI0933 98.2 2.1E-06 4.5E-11 101.2 7.3 57 854-918 107-163 (400)
214 PRK05329 anaerobic glycerol-3- 98.2 4.9E-06 1.1E-10 97.4 10.0 59 281-345 264-322 (422)
215 KOG2404|consensus 98.2 2.3E-05 5.1E-10 83.3 13.8 48 290-342 159-207 (477)
216 PF01134 GIDA: Glucose inhibit 98.2 3.7E-06 8E-11 95.7 8.4 49 286-343 106-154 (392)
217 PLN02985 squalene monooxygenas 98.1 2.2E-05 4.8E-10 95.1 14.7 37 44-81 40-76 (514)
218 PLN02172 flavin-containing mon 98.1 1.3E-05 2.8E-10 95.7 12.4 68 854-925 113-183 (461)
219 PRK07364 2-octaprenyl-6-methox 98.1 1.9E-05 4E-10 94.4 13.9 37 655-692 16-52 (415)
220 KOG0042|consensus 98.1 1.1E-06 2.4E-11 99.6 3.0 83 257-347 208-292 (680)
221 TIGR02734 crtI_fam phytoene de 98.1 2.4E-06 5.1E-11 104.6 6.3 58 282-347 225-282 (502)
222 PF01134 GIDA: Glucose inhibit 98.1 4.5E-06 9.7E-11 95.1 7.5 49 862-917 106-154 (392)
223 COG2509 Uncharacterized FAD-de 98.1 3.4E-05 7.3E-10 86.9 13.8 83 859-949 180-267 (486)
224 TIGR02733 desat_CrtD C-3',4' d 98.1 1E-05 2.2E-10 98.8 10.4 58 282-344 238-297 (492)
225 PRK07208 hypothetical protein; 98.1 3.8E-05 8.3E-10 93.4 15.1 40 654-694 1-40 (479)
226 KOG2665|consensus 98.1 3E-05 6.5E-10 82.3 11.9 127 221-353 133-268 (453)
227 KOG2853|consensus 98.1 0.00017 3.6E-09 77.6 17.5 39 43-81 82-123 (509)
228 TIGR02733 desat_CrtD C-3',4' d 98.1 1.8E-05 3.9E-10 96.5 12.2 58 858-918 238-297 (492)
229 TIGR00275 flavoprotein, HI0933 98.1 7.2E-06 1.6E-10 96.7 7.9 30 51-81 1-30 (400)
230 KOG2820|consensus 98.1 3.9E-05 8.4E-10 82.8 12.4 62 857-923 158-219 (399)
231 KOG4254|consensus 98.0 2.7E-06 5.9E-11 94.5 3.6 63 278-348 266-328 (561)
232 PRK06467 dihydrolipoamide dehy 98.0 1.2E-05 2.7E-10 96.9 9.5 37 44-81 1-37 (471)
233 PRK05329 anaerobic glycerol-3- 98.0 1.6E-05 3.5E-10 93.0 9.9 59 857-919 264-322 (422)
234 PRK05675 sdhA succinate dehydr 98.0 3.5E-05 7.6E-10 94.8 13.4 58 857-916 131-190 (570)
235 PRK07208 hypothetical protein; 98.0 4.3E-05 9.3E-10 93.0 14.1 40 44-84 1-40 (479)
236 TIGR02032 GG-red-SF geranylger 98.0 2.1E-05 4.6E-10 89.0 10.6 33 48-81 1-33 (295)
237 COG0654 UbiH 2-polyprenyl-6-me 98.0 2.4E-05 5.3E-10 92.1 11.2 33 47-80 2-34 (387)
238 PLN00093 geranylgeranyl diphos 98.0 2.9E-05 6.3E-10 92.6 11.7 39 652-691 34-72 (450)
239 PRK08773 2-octaprenyl-3-methyl 98.0 6.5E-05 1.4E-09 88.9 14.2 36 45-81 4-39 (392)
240 PRK06416 dihydrolipoamide dehy 98.0 2.3E-05 5E-10 94.8 10.4 35 46-81 3-37 (462)
241 TIGR03378 glycerol3P_GlpB glyc 98.0 0.00012 2.5E-09 84.8 15.4 62 858-923 269-330 (419)
242 PRK08773 2-octaprenyl-3-methyl 98.0 5E-05 1.1E-09 89.9 12.9 36 655-691 4-39 (392)
243 KOG2665|consensus 98.0 4.8E-05 1.1E-09 80.8 11.0 212 652-925 43-266 (453)
244 PF01494 FAD_binding_3: FAD bi 98.0 1E-05 2.2E-10 94.3 6.8 35 47-82 1-35 (356)
245 PRK07045 putative monooxygenas 98.0 3.5E-05 7.6E-10 91.0 11.4 36 45-81 3-38 (388)
246 PRK08244 hypothetical protein; 98.0 3.8E-05 8.3E-10 93.6 12.0 34 47-81 2-35 (493)
247 TIGR02032 GG-red-SF geranylger 98.0 5.4E-05 1.2E-09 85.7 12.4 34 658-692 1-34 (295)
248 PRK06847 hypothetical protein; 97.9 4E-05 8.6E-10 90.2 11.4 37 44-81 1-37 (375)
249 PRK11445 putative oxidoreducta 97.9 0.00014 3.1E-09 84.4 15.8 32 658-691 2-33 (351)
250 TIGR00136 gidA glucose-inhibit 97.9 8.6E-05 1.9E-09 89.3 13.9 33 48-81 1-33 (617)
251 PRK08243 4-hydroxybenzoate 3-m 97.9 4.7E-05 1E-09 90.0 11.7 34 47-81 2-35 (392)
252 PLN02985 squalene monooxygenas 97.9 0.00012 2.5E-09 88.9 15.1 37 654-691 40-76 (514)
253 PLN02697 lycopene epsilon cycl 97.9 5.1E-05 1.1E-09 91.4 11.2 35 45-80 106-140 (529)
254 KOG2853|consensus 97.9 0.00024 5.2E-09 76.4 14.7 37 656-692 85-124 (509)
255 PRK09126 hypothetical protein; 97.9 0.00013 2.8E-09 86.4 14.4 34 47-81 3-36 (392)
256 PRK06467 dihydrolipoamide dehy 97.9 4.6E-05 1E-09 92.0 10.4 36 655-691 2-37 (471)
257 PRK07045 putative monooxygenas 97.9 0.00013 2.7E-09 86.3 14.0 37 655-692 3-39 (388)
258 PRK08243 4-hydroxybenzoate 3-m 97.9 6.9E-05 1.5E-09 88.6 11.7 34 657-691 2-35 (392)
259 PRK11445 putative oxidoreducta 97.9 0.00017 3.7E-09 83.8 14.7 32 48-81 2-33 (351)
260 PRK06184 hypothetical protein; 97.9 7.4E-05 1.6E-09 91.3 12.1 35 46-81 2-36 (502)
261 PRK06126 hypothetical protein; 97.9 0.00012 2.6E-09 90.5 14.0 36 45-81 5-40 (545)
262 TIGR02023 BchP-ChlP geranylger 97.9 8.9E-05 1.9E-09 87.5 12.2 32 658-690 1-32 (388)
263 PLN02463 lycopene beta cyclase 97.9 6.4E-05 1.4E-09 89.2 10.9 36 45-81 26-61 (447)
264 COG2072 TrkA Predicted flavopr 97.9 0.00013 2.9E-09 86.7 13.6 38 44-82 5-43 (443)
265 PRK08244 hypothetical protein; 97.8 0.00011 2.4E-09 89.7 13.0 35 657-692 2-36 (493)
266 TIGR00136 gidA glucose-inhibit 97.8 0.00011 2.5E-09 88.2 12.1 33 658-691 1-33 (617)
267 TIGR02731 phytoene_desat phyto 97.8 0.00011 2.4E-09 88.7 12.3 51 861-913 222-274 (453)
268 PRK06834 hypothetical protein; 97.8 0.00011 2.4E-09 88.9 12.1 34 47-81 3-36 (488)
269 PRK07190 hypothetical protein; 97.8 0.00011 2.5E-09 88.6 12.1 35 46-81 4-38 (487)
270 TIGR02028 ChlP geranylgeranyl 97.8 9.4E-05 2E-09 87.3 11.2 33 658-691 1-33 (398)
271 KOG1298|consensus 97.8 1.9E-05 4.1E-10 86.2 4.6 52 861-916 157-209 (509)
272 PRK05976 dihydrolipoamide dehy 97.8 7.9E-05 1.7E-09 90.2 10.7 37 654-691 1-37 (472)
273 TIGR01424 gluta_reduc_2 glutat 97.8 5.5E-05 1.2E-09 90.9 9.1 33 657-690 2-34 (446)
274 PRK06183 mhpA 3-(3-hydroxyphen 97.8 0.00046 1E-08 85.1 17.5 37 655-692 8-44 (538)
275 PRK06617 2-octaprenyl-6-methox 97.8 0.0001 2.2E-09 86.5 11.1 33 48-81 2-34 (374)
276 COG1249 Lpd Pyruvate/2-oxoglut 97.8 5E-05 1.1E-09 89.3 8.3 36 45-81 2-37 (454)
277 PLN02697 lycopene epsilon cycl 97.8 0.00013 2.8E-09 88.0 11.9 34 656-690 107-140 (529)
278 TIGR01816 sdhA_forward succina 97.8 0.00017 3.7E-09 88.8 13.3 58 856-916 123-182 (565)
279 KOG2852|consensus 97.8 2.2E-05 4.7E-10 82.5 4.5 64 281-351 153-217 (380)
280 PRK07233 hypothetical protein; 97.8 0.00011 2.4E-09 88.2 11.5 36 659-695 1-36 (434)
281 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00018 4E-09 88.1 13.4 62 860-925 136-199 (516)
282 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 0.0002 4.3E-09 84.4 13.1 34 47-81 2-35 (390)
283 PRK06847 hypothetical protein; 97.8 0.00016 3.5E-09 85.0 12.2 36 655-691 2-37 (375)
284 PF13450 NAD_binding_8: NAD(P) 97.8 2.6E-05 5.6E-10 66.2 3.9 30 52-82 1-30 (68)
285 PRK06183 mhpA 3-(3-hydroxyphen 97.8 0.00026 5.6E-09 87.3 14.4 36 45-81 8-43 (538)
286 COG2509 Uncharacterized FAD-de 97.7 0.00037 8.1E-09 78.7 13.6 52 284-343 181-232 (486)
287 PRK06184 hypothetical protein; 97.7 0.0002 4.4E-09 87.5 12.9 36 656-692 2-37 (502)
288 PRK06834 hypothetical protein; 97.7 0.00026 5.6E-09 85.7 13.5 34 657-691 3-36 (488)
289 TIGR03377 glycerol3P_GlpA glyc 97.7 0.00018 3.8E-09 88.2 12.2 61 285-351 137-199 (516)
290 PRK08163 salicylate hydroxylas 97.7 0.00021 4.6E-09 84.7 12.6 36 45-81 2-37 (396)
291 PRK06126 hypothetical protein; 97.7 0.00036 7.8E-09 86.3 14.9 36 655-691 5-40 (545)
292 TIGR01790 carotene-cycl lycope 97.7 0.00018 4E-09 85.0 11.8 32 49-81 1-32 (388)
293 KOG2852|consensus 97.7 1.4E-05 3.1E-10 83.9 2.0 76 858-941 154-230 (380)
294 KOG1298|consensus 97.7 3.4E-05 7.3E-10 84.3 4.6 38 43-81 41-78 (509)
295 PRK07588 hypothetical protein; 97.7 0.00034 7.4E-09 82.7 13.6 32 49-81 2-33 (391)
296 COG0654 UbiH 2-polyprenyl-6-me 97.7 0.00037 8E-09 82.1 13.8 33 657-690 2-34 (387)
297 PRK07333 2-octaprenyl-6-methox 97.7 0.00056 1.2E-08 81.3 15.2 34 658-691 2-36 (403)
298 PRK07236 hypothetical protein; 97.7 0.00048 1E-08 81.3 14.5 34 47-81 6-39 (386)
299 PRK08132 FAD-dependent oxidore 97.7 0.0003 6.5E-09 87.0 13.2 36 45-81 21-56 (547)
300 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 0.00025 5.5E-09 83.6 11.5 34 657-691 2-35 (390)
301 COG0445 GidA Flavin-dependent 97.6 7.8E-05 1.7E-09 85.8 6.7 36 45-81 2-37 (621)
302 PF13450 NAD_binding_8: NAD(P) 97.6 4.7E-05 1E-09 64.6 3.8 31 662-693 1-31 (68)
303 TIGR01984 UbiH 2-polyprenyl-6- 97.6 0.00049 1.1E-08 81.1 13.9 33 659-692 1-34 (382)
304 TIGR02732 zeta_caro_desat caro 97.6 0.00019 4.1E-09 86.6 10.3 58 862-920 229-289 (474)
305 KOG2311|consensus 97.6 0.00014 3E-09 81.5 8.0 55 287-345 136-190 (679)
306 PRK08163 salicylate hydroxylas 97.6 0.00046 1E-08 81.8 13.3 36 655-691 2-37 (396)
307 PRK07190 hypothetical protein; 97.6 0.00044 9.6E-09 83.6 13.1 36 656-692 4-39 (487)
308 TIGR02732 zeta_caro_desat caro 97.6 0.00023 5.1E-09 85.8 10.4 61 285-346 228-289 (474)
309 PRK05675 sdhA succinate dehydr 97.6 0.00032 6.9E-09 86.5 11.8 57 282-342 132-190 (570)
310 PTZ00058 glutathione reductase 97.6 0.00011 2.5E-09 89.5 7.2 35 46-81 47-81 (561)
311 COG2072 TrkA Predicted flavopr 97.6 0.00041 9E-09 82.5 11.7 38 655-693 6-44 (443)
312 PRK07538 hypothetical protein; 97.6 0.00029 6.2E-09 84.0 10.5 32 49-81 2-33 (413)
313 PLN00093 geranylgeranyl diphos 97.5 9.4E-05 2E-09 88.3 5.5 36 45-81 37-72 (450)
314 KOG1399|consensus 97.5 0.00036 7.8E-09 81.9 9.8 35 47-82 6-40 (448)
315 COG0445 GidA Flavin-dependent 97.5 0.00017 3.6E-09 83.1 6.7 49 863-917 112-160 (621)
316 PRK08132 FAD-dependent oxidore 97.5 0.0018 3.8E-08 80.2 16.3 35 656-691 22-56 (547)
317 COG2907 Predicted NAD/FAD-bind 97.5 0.00094 2E-08 72.5 11.7 34 47-82 8-41 (447)
318 COG2907 Predicted NAD/FAD-bind 97.5 0.0008 1.7E-08 73.0 11.2 58 854-919 219-277 (447)
319 PRK15317 alkyl hydroperoxide r 97.5 0.0005 1.1E-08 84.2 11.2 57 864-923 399-457 (517)
320 COG3075 GlpB Anaerobic glycero 97.5 0.001 2.2E-08 71.7 11.6 54 286-345 268-321 (421)
321 PLN02612 phytoene desaturase 97.5 0.00084 1.8E-08 82.8 12.9 242 656-920 92-371 (567)
322 PRK07538 hypothetical protein; 97.5 0.00078 1.7E-08 80.2 12.3 32 659-691 2-33 (413)
323 TIGR02023 BchP-ChlP geranylger 97.4 9.3E-05 2E-09 87.3 4.3 32 48-80 1-32 (388)
324 PF00743 FMO-like: Flavin-bind 97.4 0.00016 3.5E-09 87.6 6.4 33 49-82 3-35 (531)
325 PRK06617 2-octaprenyl-6-methox 97.4 0.0015 3.2E-08 76.7 14.1 33 658-691 2-34 (374)
326 PRK06116 glutathione reductase 97.4 0.00012 2.6E-09 88.2 4.9 37 44-81 1-37 (450)
327 PTZ00367 squalene epoxidase; P 97.4 0.00021 4.6E-09 87.2 6.7 35 46-81 32-66 (567)
328 COG0562 Glf UDP-galactopyranos 97.4 0.00014 3E-09 78.2 4.2 35 47-82 1-35 (374)
329 PF00743 FMO-like: Flavin-bind 97.4 0.00053 1.1E-08 83.1 9.8 35 659-694 3-37 (531)
330 TIGR03140 AhpF alkyl hydropero 97.4 0.00087 1.9E-08 81.9 11.7 56 864-922 400-457 (515)
331 KOG2311|consensus 97.4 0.00035 7.6E-09 78.4 7.3 35 655-690 26-60 (679)
332 PRK06370 mercuric reductase; V 97.3 0.00017 3.7E-09 87.2 4.9 37 44-81 2-38 (463)
333 PRK07845 flavoprotein disulfid 97.3 0.00056 1.2E-08 82.6 9.3 32 49-81 3-34 (466)
334 PF04820 Trp_halogenase: Trypt 97.3 0.00043 9.3E-09 82.7 8.2 55 852-912 154-208 (454)
335 TIGR01816 sdhA_forward succina 97.3 0.00087 1.9E-08 82.6 11.1 57 281-342 124-182 (565)
336 PLN02487 zeta-carotene desatur 97.3 0.00062 1.3E-08 83.0 9.6 262 657-920 75-365 (569)
337 PF05834 Lycopene_cycl: Lycope 97.3 0.0012 2.6E-08 77.3 11.7 33 659-692 1-35 (374)
338 PRK06475 salicylate hydroxylas 97.3 0.0012 2.7E-08 78.2 11.9 32 49-81 4-35 (400)
339 KOG1399|consensus 97.3 0.00084 1.8E-08 78.8 10.1 36 657-693 6-41 (448)
340 PRK08020 ubiF 2-octaprenyl-3-m 97.3 0.00019 4.2E-09 84.9 4.9 35 46-81 4-38 (391)
341 PRK15317 alkyl hydroperoxide r 97.3 0.00082 1.8E-08 82.3 10.4 34 656-690 210-243 (517)
342 PRK05976 dihydrolipoamide dehy 97.3 0.00019 4.2E-09 86.9 4.8 37 44-81 1-37 (472)
343 TIGR01421 gluta_reduc_1 glutat 97.3 0.00018 4E-09 86.3 4.4 35 46-81 1-35 (450)
344 PRK07494 2-octaprenyl-6-methox 97.3 0.00023 5E-09 84.1 5.1 36 45-81 5-40 (388)
345 PRK08010 pyridine nucleotide-d 97.3 0.00022 4.7E-09 85.7 4.8 35 46-81 2-36 (441)
346 PRK08013 oxidoreductase; Provi 97.3 0.00024 5.1E-09 84.3 4.8 35 47-82 3-37 (400)
347 TIGR02028 ChlP geranylgeranyl 97.3 0.00021 4.6E-09 84.3 4.3 33 48-81 1-33 (398)
348 TIGR02352 thiamin_ThiO glycine 97.2 0.00037 8E-09 80.6 6.1 54 282-345 143-196 (337)
349 PRK07608 ubiquinone biosynthes 97.2 0.00027 5.8E-09 83.6 5.0 36 46-82 4-39 (388)
350 PF13434 K_oxygenase: L-lysine 97.2 0.0012 2.7E-08 75.6 10.1 35 657-691 2-36 (341)
351 PRK05714 2-octaprenyl-3-methyl 97.2 0.00028 6.2E-09 83.8 5.0 34 47-81 2-35 (405)
352 COG0562 Glf UDP-galactopyranos 97.2 0.00031 6.7E-09 75.6 4.4 36 658-694 2-37 (374)
353 PRK06116 glutathione reductase 97.2 0.00024 5.2E-09 85.6 4.0 36 655-691 2-37 (450)
354 PF13434 K_oxygenase: L-lysine 97.2 0.0011 2.5E-08 75.8 9.3 35 47-81 2-36 (341)
355 PRK07818 dihydrolipoamide dehy 97.2 0.00032 6.9E-09 84.9 4.8 35 46-81 3-37 (466)
356 TIGR01424 gluta_reduc_2 glutat 97.2 0.00028 6E-09 84.8 4.2 34 47-81 2-35 (446)
357 PRK07251 pyridine nucleotide-d 97.2 0.00034 7.3E-09 84.0 4.8 35 46-81 2-36 (438)
358 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00035 7.5E-09 80.6 4.6 34 48-82 2-35 (377)
359 COG0492 TrxB Thioredoxin reduc 97.2 0.00032 6.9E-09 78.5 4.2 35 46-81 2-37 (305)
360 PF01494 FAD_binding_3: FAD bi 97.2 0.00029 6.2E-09 82.0 4.0 35 657-692 1-35 (356)
361 TIGR03140 AhpF alkyl hydropero 97.2 0.0018 3.9E-08 79.2 11.1 33 656-689 211-243 (515)
362 TIGR03143 AhpF_homolog putativ 97.2 0.00034 7.3E-09 86.2 4.7 37 44-81 1-37 (555)
363 PRK06370 mercuric reductase; V 97.2 0.00029 6.3E-09 85.2 4.1 38 654-692 2-39 (463)
364 PRK08850 2-octaprenyl-6-methox 97.1 0.00038 8.3E-09 82.7 4.8 34 46-80 3-36 (405)
365 PRK08849 2-octaprenyl-3-methyl 97.1 0.00038 8.2E-09 82.1 4.7 34 47-81 3-36 (384)
366 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.0004 8.6E-09 82.0 4.6 33 49-82 1-33 (385)
367 PRK08010 pyridine nucleotide-d 97.1 0.00036 7.8E-09 83.9 4.2 35 656-691 2-36 (441)
368 PRK06327 dihydrolipoamide dehy 97.1 0.00041 8.9E-09 84.0 4.6 35 45-80 2-36 (475)
369 KOG2960|consensus 97.1 0.0013 2.7E-08 66.2 7.1 138 656-912 75-231 (328)
370 PRK05249 soluble pyridine nucl 97.1 0.00044 9.5E-09 83.7 4.8 35 46-81 4-38 (461)
371 TIGR02352 thiamin_ThiO glycine 97.1 0.0005 1.1E-08 79.5 4.9 55 857-919 142-196 (337)
372 PRK07494 2-octaprenyl-6-methox 97.1 0.00042 9.1E-09 81.9 4.3 36 655-691 5-40 (388)
373 PRK06475 salicylate hydroxylas 97.1 0.0047 1E-07 73.2 13.2 32 659-691 4-35 (400)
374 KOG0029|consensus 97.1 0.00051 1.1E-08 82.1 4.9 38 45-83 13-50 (501)
375 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.00044 9.5E-09 81.8 4.4 36 655-691 3-38 (391)
376 PRK07608 ubiquinone biosynthes 97.0 0.00044 9.4E-09 81.8 4.1 36 656-692 4-39 (388)
377 PRK06115 dihydrolipoamide dehy 97.0 0.00048 1E-08 83.2 4.5 33 47-80 3-35 (466)
378 PRK09897 hypothetical protein; 97.0 0.0068 1.5E-07 73.3 14.1 34 48-81 2-36 (534)
379 PF04820 Trp_halogenase: Trypt 97.0 0.00085 1.8E-08 80.2 6.3 33 49-82 1-36 (454)
380 TIGR01989 COQ6 Ubiquinone bios 97.0 0.00051 1.1E-08 82.3 4.4 33 48-81 1-37 (437)
381 PRK08013 oxidoreductase; Provi 97.0 0.00048 1E-08 81.6 4.2 35 657-692 3-37 (400)
382 PRK07333 2-octaprenyl-6-methox 97.0 0.00055 1.2E-08 81.4 4.7 35 47-81 1-36 (403)
383 PRK09126 hypothetical protein; 97.0 0.00047 1E-08 81.6 4.0 35 657-692 3-37 (392)
384 PF05834 Lycopene_cycl: Lycope 97.0 0.00057 1.2E-08 80.0 4.6 33 49-82 1-35 (374)
385 PRK07251 pyridine nucleotide-d 97.0 0.00049 1.1E-08 82.6 4.2 35 656-691 2-36 (438)
386 TIGR01421 gluta_reduc_1 glutat 97.0 0.00046 1E-08 82.9 3.8 35 657-692 2-36 (450)
387 PRK07818 dihydrolipoamide dehy 97.0 0.00049 1.1E-08 83.2 4.0 36 656-692 3-38 (466)
388 PTZ00052 thioredoxin reductase 97.0 0.00059 1.3E-08 82.9 4.7 35 45-80 3-37 (499)
389 TIGR01350 lipoamide_DH dihydro 97.0 0.00057 1.2E-08 82.7 4.5 33 47-80 1-33 (461)
390 PRK14694 putative mercuric red 97.0 0.0006 1.3E-08 82.5 4.6 35 46-81 5-39 (468)
391 TIGR01984 UbiH 2-polyprenyl-6- 97.0 0.00061 1.3E-08 80.3 4.6 33 49-82 1-34 (382)
392 TIGR02053 MerA mercuric reduct 97.0 0.00059 1.3E-08 82.6 4.5 33 48-81 1-33 (463)
393 PRK08849 2-octaprenyl-3-methyl 97.0 0.00059 1.3E-08 80.4 4.1 34 657-691 3-36 (384)
394 TIGR00031 UDP-GALP_mutase UDP- 97.0 0.00066 1.4E-08 78.3 4.4 35 658-693 2-36 (377)
395 PRK05249 soluble pyridine nucl 96.9 0.00064 1.4E-08 82.3 4.4 37 655-692 3-39 (461)
396 TIGR01292 TRX_reduct thioredox 96.9 0.00064 1.4E-08 77.1 4.2 33 48-81 1-33 (300)
397 PRK05714 2-octaprenyl-3-methyl 96.9 0.00065 1.4E-08 80.8 4.3 34 657-691 2-35 (405)
398 COG0492 TrxB Thioredoxin reduc 96.9 0.00063 1.4E-08 76.2 3.8 60 861-925 188-248 (305)
399 PLN02576 protoporphyrinogen ox 96.9 0.001 2.3E-08 81.3 6.1 41 44-84 9-49 (496)
400 PRK06292 dihydrolipoamide dehy 96.9 0.00074 1.6E-08 81.7 4.7 34 46-80 2-35 (460)
401 PLN02463 lycopene beta cyclase 96.9 0.00067 1.5E-08 80.6 4.1 36 655-691 26-61 (447)
402 PTZ00058 glutathione reductase 96.9 0.00084 1.8E-08 82.0 5.1 37 655-692 46-82 (561)
403 PF06100 Strep_67kDa_ant: Stre 96.9 0.038 8.1E-07 64.4 17.9 63 862-929 217-283 (500)
404 COG3634 AhpF Alkyl hydroperoxi 96.9 0.003 6.6E-08 68.4 8.4 58 287-349 401-460 (520)
405 PRK08850 2-octaprenyl-6-methox 96.9 0.00066 1.4E-08 80.7 4.0 35 655-690 2-36 (405)
406 PRK06996 hypothetical protein; 96.9 0.00091 2E-08 79.2 5.1 38 44-81 8-48 (398)
407 PRK13748 putative mercuric red 96.9 0.00082 1.8E-08 83.5 4.8 35 46-81 97-131 (561)
408 TIGR03143 AhpF_homolog putativ 96.9 0.00069 1.5E-08 83.5 4.0 37 655-692 2-38 (555)
409 PLN02268 probable polyamine ox 96.9 0.0011 2.4E-08 79.7 5.6 35 49-84 2-36 (435)
410 KOG0405|consensus 96.9 0.0043 9.3E-08 67.4 9.2 34 656-690 19-52 (478)
411 PRK06115 dihydrolipoamide dehy 96.9 0.00073 1.6E-08 81.6 3.9 33 657-690 3-35 (466)
412 PRK07233 hypothetical protein; 96.8 0.00094 2E-08 80.3 4.7 35 49-84 1-35 (434)
413 PLN02546 glutathione reductase 96.8 0.00088 1.9E-08 81.9 4.4 33 46-79 78-110 (558)
414 PRK06327 dihydrolipoamide dehy 96.8 0.00082 1.8E-08 81.5 4.0 34 655-689 2-35 (475)
415 PRK08294 phenol 2-monooxygenas 96.8 0.0011 2.4E-08 82.7 5.2 37 44-81 29-66 (634)
416 PRK05732 2-octaprenyl-6-methox 96.8 0.001 2.2E-08 78.8 4.7 35 46-80 2-38 (395)
417 PLN02507 glutathione reductase 96.8 0.00092 2E-08 81.2 4.3 33 46-79 24-56 (499)
418 TIGR01789 lycopene_cycl lycope 96.8 0.001 2.2E-08 77.6 4.5 33 49-81 1-34 (370)
419 PRK06416 dihydrolipoamide dehy 96.8 0.00088 1.9E-08 81.1 4.0 35 656-691 3-37 (462)
420 PTZ00153 lipoamide dehydrogena 96.8 0.001 2.2E-08 82.5 4.4 34 47-81 116-149 (659)
421 TIGR01988 Ubi-OHases Ubiquinon 96.8 0.00095 2.1E-08 78.8 4.0 33 659-692 1-33 (385)
422 PRK06292 dihydrolipoamide dehy 96.8 0.00099 2.1E-08 80.6 3.9 35 656-691 2-36 (460)
423 PRK05732 2-octaprenyl-6-methox 96.8 0.001 2.2E-08 78.9 3.9 34 656-690 2-38 (395)
424 KOG0029|consensus 96.7 0.0014 3E-08 78.5 4.9 39 655-694 13-51 (501)
425 PRK11883 protoporphyrinogen ox 96.7 0.0011 2.3E-08 80.2 4.0 35 49-84 2-38 (451)
426 PLN02927 antheraxanthin epoxid 96.7 0.0017 3.6E-08 80.0 5.5 37 44-81 78-114 (668)
427 PRK09897 hypothetical protein; 96.7 0.014 3.1E-07 70.6 13.4 35 658-692 2-37 (534)
428 TIGR01790 carotene-cycl lycope 96.7 0.0011 2.4E-08 78.2 4.0 32 659-691 1-32 (388)
429 COG1249 Lpd Pyruvate/2-oxoglut 96.7 0.0011 2.4E-08 78.1 3.8 36 655-691 2-37 (454)
430 TIGR02053 MerA mercuric reduct 96.7 0.0011 2.4E-08 80.1 3.9 34 658-692 1-34 (463)
431 PRK06753 hypothetical protein; 96.7 0.0013 2.8E-08 77.3 4.3 33 49-82 2-34 (373)
432 TIGR01350 lipoamide_DH dihydro 96.7 0.0011 2.5E-08 80.1 3.8 33 657-690 1-33 (461)
433 PLN02576 protoporphyrinogen ox 96.7 0.0013 2.9E-08 80.4 4.3 38 656-694 11-49 (496)
434 TIGR00562 proto_IX_ox protopor 96.7 0.0016 3.5E-08 78.9 4.9 37 48-84 3-42 (462)
435 TIGR01423 trypano_reduc trypan 96.7 0.0016 3.4E-08 78.7 4.6 35 46-80 2-36 (486)
436 PLN02568 polyamine oxidase 96.7 0.0019 4.1E-08 78.7 5.3 39 45-84 3-46 (539)
437 TIGR01292 TRX_reduct thioredox 96.7 0.0013 2.8E-08 74.6 3.7 33 658-691 1-33 (300)
438 PTZ00367 squalene epoxidase; P 96.6 0.0015 3.2E-08 79.9 4.2 36 655-691 31-66 (567)
439 TIGR01989 COQ6 Ubiquinone bios 96.6 0.0015 3.3E-08 78.3 4.3 34 658-691 1-37 (437)
440 COG1231 Monoamine oxidase [Ami 96.6 0.0019 4.2E-08 73.6 4.8 38 45-83 5-42 (450)
441 COG3349 Uncharacterized conser 96.6 0.0017 3.7E-08 75.5 4.3 34 50-84 3-36 (485)
442 PTZ00052 thioredoxin reductase 96.6 0.0014 3.1E-08 79.7 3.9 34 656-690 4-37 (499)
443 PRK05335 tRNA (uracil-5-)-meth 96.6 0.0017 3.6E-08 75.1 4.2 34 48-82 3-36 (436)
444 PRK10262 thioredoxin reductase 96.6 0.0016 3.6E-08 74.6 4.1 36 45-81 4-39 (321)
445 PF07992 Pyr_redox_2: Pyridine 96.6 0.0022 4.8E-08 67.9 4.8 32 49-81 1-32 (201)
446 COG1252 Ndh NADH dehydrogenase 96.6 0.021 4.6E-07 65.9 12.9 34 49-82 5-39 (405)
447 PLN02268 probable polyamine ox 96.6 0.0021 4.5E-08 77.3 5.0 36 659-695 2-37 (435)
448 PLN02546 glutathione reductase 96.6 0.0015 3.3E-08 79.8 3.7 33 656-689 78-110 (558)
449 PRK13748 putative mercuric red 96.6 0.0017 3.6E-08 80.8 4.1 36 655-691 96-131 (561)
450 PRK07236 hypothetical protein; 96.6 0.0018 3.9E-08 76.5 4.1 35 656-691 5-39 (386)
451 PRK14694 putative mercuric red 96.5 0.0018 3.8E-08 78.5 4.1 37 655-692 4-40 (468)
452 PLN02507 glutathione reductase 96.5 0.0017 3.6E-08 79.0 3.7 33 656-689 24-56 (499)
453 TIGR01438 TGR thioredoxin and 96.5 0.0021 4.5E-08 77.8 4.4 33 47-80 2-34 (484)
454 PRK11883 protoporphyrinogen ox 96.5 0.0019 4.1E-08 78.0 4.1 35 659-694 2-38 (451)
455 PRK06996 hypothetical protein; 96.5 0.0022 4.8E-08 76.0 4.5 38 653-691 7-48 (398)
456 TIGR03315 Se_ygfK putative sel 96.5 0.0031 6.7E-08 80.9 6.0 36 46-82 536-571 (1012)
457 PLN02568 polyamine oxidase 96.5 0.0023 5E-08 78.0 4.6 41 654-695 2-47 (539)
458 TIGR03197 MnmC_Cterm tRNA U-34 96.5 0.023 5E-07 66.9 12.9 53 282-345 141-193 (381)
459 PLN02676 polyamine oxidase 96.5 0.0031 6.7E-08 76.3 5.5 37 46-83 25-62 (487)
460 TIGR00562 proto_IX_ox protopor 96.5 0.0022 4.8E-08 77.7 4.2 36 658-694 3-42 (462)
461 PRK12831 putative oxidoreducta 96.4 0.0038 8.2E-08 75.2 6.0 36 46-82 139-174 (464)
462 PRK14727 putative mercuric red 96.4 0.0029 6.3E-08 76.7 5.0 35 46-81 15-49 (479)
463 TIGR01316 gltA glutamate synth 96.4 0.004 8.7E-08 74.8 6.2 36 46-82 132-167 (449)
464 TIGR01789 lycopene_cycl lycope 96.4 0.0022 4.7E-08 74.8 3.7 33 659-691 1-34 (370)
465 PRK07588 hypothetical protein; 96.4 0.0021 4.6E-08 76.0 3.8 32 659-691 2-33 (391)
466 PRK08294 phenol 2-monooxygenas 96.4 0.0033 7.1E-08 78.5 5.5 39 654-692 29-67 (634)
467 PRK05868 hypothetical protein; 96.4 0.0025 5.5E-08 74.6 4.3 33 49-82 3-35 (372)
468 PF06100 Strep_67kDa_ant: Stre 96.4 0.17 3.6E-06 59.2 18.5 56 285-340 216-273 (500)
469 PTZ00153 lipoamide dehydrogena 96.4 0.0023 5.1E-08 79.3 3.8 34 656-690 115-148 (659)
470 PRK12810 gltD glutamate syntha 96.4 0.0041 8.9E-08 75.2 5.9 36 46-82 142-177 (471)
471 PRK06753 hypothetical protein; 96.4 0.0025 5.4E-08 74.9 3.9 33 659-692 2-34 (373)
472 COG1252 Ndh NADH dehydrogenase 96.4 0.061 1.3E-06 62.2 14.9 59 856-924 213-271 (405)
473 TIGR01423 trypano_reduc trypan 96.4 0.0024 5.3E-08 77.1 3.7 34 656-690 2-36 (486)
474 PRK12416 protoporphyrinogen ox 96.3 0.0025 5.3E-08 77.3 3.7 36 49-84 3-43 (463)
475 PF07992 Pyr_redox_2: Pyridine 96.3 0.0034 7.5E-08 66.4 4.2 32 659-691 1-32 (201)
476 TIGR01372 soxA sarcosine oxida 96.3 0.006 1.3E-07 80.3 7.2 62 285-352 360-422 (985)
477 TIGR03197 MnmC_Cterm tRNA U-34 96.3 0.026 5.6E-07 66.5 11.8 54 858-920 141-194 (381)
478 COG3349 Uncharacterized conser 96.3 0.0034 7.4E-08 73.1 4.0 34 660-694 3-36 (485)
479 PRK13512 coenzyme A disulfide 96.2 0.022 4.8E-07 68.2 10.6 33 49-81 3-36 (438)
480 TIGR01438 TGR thioredoxin and 96.2 0.0035 7.6E-08 75.9 3.7 33 657-690 2-34 (484)
481 PRK12769 putative oxidoreducta 96.2 0.0056 1.2E-07 77.2 5.6 36 46-82 326-361 (654)
482 PRK10262 thioredoxin reductase 96.2 0.0035 7.5E-08 71.9 3.4 64 858-925 191-257 (321)
483 PRK05335 tRNA (uracil-5-)-meth 96.1 0.0041 8.9E-08 71.9 3.7 34 658-692 3-36 (436)
484 TIGR00137 gid_trmFO tRNA:m(5)U 96.1 0.0048 1E-07 71.9 4.2 34 48-82 1-34 (433)
485 PF13454 NAD_binding_9: FAD-NA 96.1 0.075 1.6E-06 53.7 12.5 31 661-691 1-35 (156)
486 TIGR03452 mycothione_red mycot 96.1 0.0062 1.3E-07 73.2 5.3 32 47-81 2-33 (452)
487 TIGR02731 phytoene_desat phyto 96.1 0.0046 9.9E-08 74.7 4.2 35 49-84 1-35 (453)
488 KOG2614|consensus 96.1 0.0054 1.2E-07 69.0 4.3 34 47-81 2-35 (420)
489 PRK12778 putative bifunctional 96.1 0.0074 1.6E-07 77.4 6.2 36 46-82 430-465 (752)
490 COG3075 GlpB Anaerobic glycero 96.1 0.0049 1.1E-07 66.6 3.7 57 858-918 264-320 (421)
491 COG1231 Monoamine oxidase [Ami 96.1 0.0056 1.2E-07 70.0 4.4 39 655-694 5-43 (450)
492 PRK14727 putative mercuric red 96.1 0.0051 1.1E-07 74.6 4.4 36 655-691 14-49 (479)
493 PRK05868 hypothetical protein; 96.1 0.0047 1E-07 72.4 3.9 33 659-692 3-35 (372)
494 PLN02927 antheraxanthin epoxid 96.0 0.0054 1.2E-07 75.6 4.4 36 655-691 79-114 (668)
495 PRK12775 putative trifunctiona 96.0 0.0069 1.5E-07 79.3 5.4 36 46-82 429-464 (1006)
496 COG1148 HdrA Heterodisulfide r 96.0 0.0062 1.3E-07 69.2 4.2 34 48-82 125-158 (622)
497 PLN02676 polyamine oxidase 96.0 0.0063 1.4E-07 73.6 4.6 38 656-694 25-63 (487)
498 COG1148 HdrA Heterodisulfide r 95.9 0.0062 1.3E-07 69.2 4.0 36 658-694 125-160 (622)
499 TIGR03862 flavo_PP4765 unchara 95.9 0.013 2.9E-07 67.4 6.8 112 814-943 56-167 (376)
500 COG1232 HemY Protoporphyrinoge 95.9 0.0059 1.3E-07 71.4 3.9 34 50-84 3-38 (444)
No 1
>KOG1238|consensus
Probab=100.00 E-value=4.7e-92 Score=805.67 Aligned_cols=513 Identities=43% Similarity=0.771 Sum_probs=471.1
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCcccccccccccCCCCccCccccCccccccCCCCCeeec
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNW 734 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1183)
..+|||||||||.|||++|.+|+|++.++|||||+|+.+.-...+|.....+..+.++|.|.++|+...|+.+.++.|.|
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~w 134 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYW 134 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceec
Confidence 46899999999999999999999988899999999998866778887778888999999999999999999999999999
Q ss_pred cccceecCcccccceeEeeCCccccchhhccCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCCChHH
Q psy8892 735 PRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLS 814 (1183)
Q Consensus 735 ~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 814 (1183)
+|||++||+|++|+|+|.|+.+.|||.|++.|++||+|++++|||+|+|....+.....++|+..|+..+....+..++.
T Consensus 135 pRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~ 214 (623)
T KOG1238|consen 135 PRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLF 214 (623)
T ss_pred CccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchh
Confidence 99999999999999999999999999999999999999999999999999887766677799999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCC-CCCCceeeeecccccCCccchHHHhhhhhhhc-CCCcEEEcCcEEEEEEEcCCCCeEEEEEE
Q psy8892 815 AAFLEAGSELGYDQVDH-CENPIGFSYVLANKIRGARQSASKAFIRPIRK-RHNLKVAKEARVTKILIDPITKRTYGVEF 892 (1183)
Q Consensus 815 ~~~~~~~~~~G~~~~d~-~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~-~~g~~i~~~t~V~~I~~~~~~gra~GV~~ 892 (1183)
..+.++..++|.+..|+ +....|+.+.+.+..+|.|+++..+|+.++.. |+|+++..++.|++|++|..+.++.||++
T Consensus 215 ~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~ 294 (623)
T KOG1238|consen 215 TAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEF 294 (623)
T ss_pred hHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEE
Confidence 99999999999888899 88899999999999999999999999999887 89999999999999999977789999999
Q ss_pred eeC-CeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC-CCcccccccccceEEEEEcCccccccc
Q psy8892 893 SKN-RKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNMQDHLSMAGLVFLVNSSVTIVES 970 (1183)
Q Consensus 893 ~~~-~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp-VG~nl~dh~~~~~~~~~~~~~~~~~~~ 970 (1183)
... ++.++|+|+||||||||+++||||||+|||||+++|+++||||+.||| ||+|||||+..+.+++..+ +.+....
T Consensus 295 ~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~~~ 373 (623)
T KOG1238|consen 295 VRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELSLI 373 (623)
T ss_pred EecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Ccccccc
Confidence 987 799999999999999999999999999999999999999999999999 9999999999755555544 4443444
Q ss_pred ccCChHHHHHHHhcCCCCCCCccccceEEEeecCCCCCCC-CCCeeEeecCCcccCCCCCcchhhcccccccccccccCC
Q psy8892 971 KYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPN-HPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPF 1049 (1183)
Q Consensus 971 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1183)
.+.....+.+|+..++||+++.+ .+..+|+++.....+. +||+|+++.+..+..+....+++..+ ++|++++...
T Consensus 374 ~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~ 449 (623)
T KOG1238|consen 374 RLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIYQALFGEL 449 (623)
T ss_pred ccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHHHHhhhhh
Confidence 44556789999999999999644 8999999998877554 99999999888887776555665555 6777777777
Q ss_pred CCCCeEEEEEeeccccCCCcccCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhHhhhccCC
Q psy8892 1050 AEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLP 1129 (1183)
Q Consensus 1050 ~~~~~~~~~~~l~~P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1183)
...+.++++..+++|+||| +|+|+|+||++.|.|+||||+||.|++++++|||.+.++.++++|++++..+..
T Consensus 450 ~~~~~~~i~~~~l~P~SrG-------~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~ 522 (623)
T KOG1238|consen 450 TNSDSFVIFPKLLRPKSRG-------RLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWK 522 (623)
T ss_pred hcCceeEEeehhcCCCccc-------eEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcc
Confidence 7777899999999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCcEEEcCC
Q psy8892 1130 VKFPGCEPYEFRSDEYWACAARQLTTNLHHQICPHIADAVDRRGEIMLSS 1179 (1183)
Q Consensus 1130 ~~~p~~~~~~~~s~~~~~~~i~~~~~t~~H~~gTc~Mg~~~~~~~Vvd~~ 1179 (1183)
.+.|+|+.+...||++|+||+|+.+.|.||++|||+|||.-|...|||+.
T Consensus 523 ~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~ 572 (623)
T KOG1238|consen 523 KPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQ 572 (623)
T ss_pred ccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCc
Confidence 89999999999999999999999999999999999999999999999873
No 2
>KOG1238|consensus
Probab=100.00 E-value=2.4e-79 Score=701.13 Aligned_cols=519 Identities=42% Similarity=0.687 Sum_probs=455.6
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCCCCcccccccccccCCCCCCCcccccCCCcccCCCCCee
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWGYTTEKTDGICKGMKNQRC 122 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1183)
+...+||+||||||.|||++|.+|+|.+..+|||||+|+.+.....+|.....+..+.++|.|.++|+...|..+.+..+
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 36678999999999999999999999988999999999987777788877777888899999999999999999999999
Q ss_pred ccCCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHcCCCCCCccchHHHH
Q psy8892 123 NWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYF 202 (1183)
Q Consensus 123 ~~~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~~~~~w~~~~l~~~~ 202 (1183)
.|+|||++||+|.+|+|+|. |+.+.||+.|++.++++|+|+++++||
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~---------------------------------RG~r~Dyd~W~~~gnpgW~y~~vl~yf 179 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYV---------------------------------RGNRRDYDRWAAEGNPGWSYDEVLPYF 179 (623)
T ss_pred ecCccceecccccccceEEe---------------------------------cCCccchHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999 999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCcceeecCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcceeeeecccCCCcccchhhhhh
Q psy8892 203 KKSEDMKTAELKSSPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASRAFL 282 (1183)
Q Consensus 203 ~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l 282 (1183)
+++|..........++|+..|++.++...+..+....+.++.+++|....|+|+....|+.....+.+.|.|+++..+++
T Consensus 180 ~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l 259 (623)
T KOG1238|consen 180 KKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYL 259 (623)
T ss_pred HHHhhccCCCcccCcccccCCcceeccccccCchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhh
Confidence 99999887777778899999999999999999999999999999998899999999999999999999999999999999
Q ss_pred hcccC-CCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC-CeEEEEEeCcEEEEcCCCCCChHHHHHhCCCChhhhhhc
Q psy8892 283 RPIRK-RPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN-KQRHTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEM 360 (1183)
Q Consensus 283 ~~~~~-~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~-g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~~~l~~~ 360 (1183)
.++.. |+|+.+..++.|++|++|..+. ++.||++... ++.++++|+||||||||||+||||||+|||||+++|+++
T Consensus 260 ~~~~~~R~NL~~~~~~~vtrvl~D~~~~--~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~ 337 (623)
T KOG1238|consen 260 KPIRLTRPNLHISRNAAVTRVLIDPAGK--RAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKL 337 (623)
T ss_pred hhhhccCccccccccceEEEEEEcCCCc--eEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhc
Confidence 99887 8999999999999999996544 9999999987 799999999999999999999999999999999999999
Q ss_pred CCCceecCc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCccccccccccccccccccccccccchhchhhhcc
Q psy8892 361 NIPVIQDLK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVN 439 (1183)
Q Consensus 361 gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1183)
|||++.|+| ||+||+||+..++..+..+ +.... .
T Consensus 338 gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~------------------------------------~-------- 372 (623)
T KOG1238|consen 338 GIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELS------------------------------------L-------- 372 (623)
T ss_pred CCCeeccCcccccccccccccceeeecCC-Ccccc------------------------------------c--------
Confidence 999999999 9999999998877555443 21100 0
Q ss_pred cchhhhhhcccchhhHHHHHHhCCCCCcCcccccEEEEEeccCCC-CCCCCcEeEeecCCccCCCCCcccccccccchhh
Q psy8892 440 DSVTIVESQFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFEN-DKTRPDIELVFGPGALTGDSNGSLRSLLGISDKF 518 (1183)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1183)
.++..+..+.+|...++||+...+ .+..+|+.+.... +..+||+|+++.+..+..+....+....+ ++
T Consensus 373 -------~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~ 441 (623)
T KOG1238|consen 373 -------IRLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EI 441 (623)
T ss_pred -------cccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hH
Confidence 111122345789999999998876 7899999998765 47899999999998888777655555444 77
Q ss_pred hhcccCCCCCCCeEEEEeeecccCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhcccccc---ccc
Q psy8892 519 YRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLV---LSV 595 (1183)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~---~~~ 595 (1183)
+++.+......+.+.++..+++|+|||+|+|+|+||++.|.|++||+++|.|++.+++|+|.+.++.++..+.. ...
T Consensus 442 y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~ 521 (623)
T KOG1238|consen 442 YQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLW 521 (623)
T ss_pred HHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhc
Confidence 77777777666789999999999999999999999999999999999999999999999999999986654321 111
Q ss_pred c--------CCCCccchHHHHHHhccccc--------cc-----ccccCCcceeeeccccccccccccccccccccccc
Q psy8892 596 A--------HAQSQLFRTECALFSLVCHL--------LL-----LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKI 653 (1183)
Q Consensus 596 ~--------~~g~~~~~~~~~~~~~~~t~--------~g-----~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~~ 653 (1183)
. ..-.....|+|++|+.+.|+ || ++|||+++||| ||+||||||+||||.+++.||..
T Consensus 522 ~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~-Gv~~LRVVDaSimP~~psgN~nA 599 (623)
T KOG1238|consen 522 KKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVH-GVRGLRVVDASIMPESPSGNPNA 599 (623)
T ss_pred cccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceec-cccCceEeeccccCCCCCCCccH
Confidence 1 11223345999999988766 45 69999999999 99999999999999999999874
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=9.1e-67 Score=634.86 Aligned_cols=476 Identities=34% Similarity=0.532 Sum_probs=381.2
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC---CCccccccccc-ccCCCCccCccccCccccccCCCCCeeec
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES---LLTDVPLFVSY-MVDTDFNWGYKTEKDERFCRGMSDQTCNW 734 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1183)
||||||||+||+++|.+|||+++.+|||||+|+... .....|..... ...+.++|.|.+.++.. +.++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999995337999999997532 22333432222 23455789999888876 67888999
Q ss_pred cccceecCcccccceeEeeCCccccchhhc-cCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCCChH
Q psy8892 735 PRGKAMGGTSVINYMVYSRGVPQDFDNWEA-LGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPL 813 (1183)
Q Consensus 735 ~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 813 (1183)
++|+++||+|.+|+|+|.|+++.||+.|+. .|+++|+|++++|||+|+|.+... ...+|+..|++.+..+....+.
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~~ 153 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNPL 153 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCHH
Confidence 999999999999999999999999999988 688999999999999999988653 2357889999998877777788
Q ss_pred HHHHHHHHHHCCCCCC-CC-CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEE
Q psy8892 814 SAAFLEAGSELGYDQV-DH-CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVE 891 (1183)
Q Consensus 814 ~~~~~~~~~~~G~~~~-d~-~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~ 891 (1183)
.+.+.++++++|++.. ++ .....|++.+...|.+|.|.++..+||.++.+++|++|+++++|++|++++ ++|+||+
T Consensus 154 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV~ 231 (532)
T TIGR01810 154 FQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGVE 231 (532)
T ss_pred HHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEEE
Confidence 8999999999999875 44 555667877777788999999999999888779999999999999999985 7999999
Q ss_pred EeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC-CCcccccccccceEEEEEcCcccccc-
Q psy8892 892 FSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNMQDHLSMAGLVFLVNSSVTIVE- 969 (1183)
Q Consensus 892 ~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp-VG~nl~dh~~~~~~~~~~~~~~~~~~- 969 (1183)
+..+++..++.++|+||||||+++||+||++|||||+++|+++||++++||| ||+|||||+.+ .+.+.++.......
T Consensus 232 ~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~~ 310 (532)
T TIGR01810 232 FKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYPS 310 (532)
T ss_pred EEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCcccccc
Confidence 9876555566666999999999999999999999999999999999999999 99999999986 78888765432110
Q ss_pred -cccCChHHHHHHHhcCCCCCCCccccceEEEeecCCCCCCCCCCeeEeecCCcccCCCCCcchhhcccccccccccccC
Q psy8892 970 -SKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRP 1048 (1183)
Q Consensus 970 -~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1183)
..+.......+|+..+.|++.. ......+|++..... ..|++++.+.+........ .
T Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~-------------------~ 368 (532)
T TIGR01810 311 LNWLKQPFIGAQWLFGRKGAGAS-NHFEGGGFVRSNDDV--DYPNIQYHFLPVAIRYDGT-------------------K 368 (532)
T ss_pred cchhhhhHHHHHHHhcCCCCccc-cccceeEEEecCCCC--CCCCeEEEEEeeeeccCCC-------------------C
Confidence 0001122345787778888763 455556777643211 1577777654422110000 0
Q ss_pred CCCCCeEEEEEeeccccCCCcccCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhHhhhccC
Q psy8892 1049 FAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLL 1128 (1183)
Q Consensus 1049 ~~~~~~~~~~~~l~~P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1183)
......+++.+.+++|+||| +|+|+|+||.+.|.|++|||+||.|++.|+++++++++++++.+|+.+...+
T Consensus 369 ~~~~~~~~~~~~~~~P~srG-------~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~- 440 (532)
T TIGR01810 369 APKAHGFQVHVGPMYSNSRG-------HVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE- 440 (532)
T ss_pred CCCCCcEEEEEeecCCCCce-------EEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc-
Confidence 00112356677889999999 9999999999999999999999999999999999999999999888865432
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCcEEEcCC
Q psy8892 1129 PVKFPGCEPYEFRSDEYWACAARQLTTNLHHQICPHIADAVDRRGEIMLSS 1179 (1183)
Q Consensus 1129 ~~~~p~~~~~~~~s~~~~~~~i~~~~~t~~H~~gTc~Mg~~~~~~~Vvd~~ 1179 (1183)
..|+. ...+||+|++|+|+...+.+|++|||+||+.++...|||+.
T Consensus 441 --~~p~~---~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~ 486 (532)
T TIGR01810 441 --ISPGP---EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPE 486 (532)
T ss_pred --cCCCC---CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCC
Confidence 34543 35899999999999999999999999999866667888874
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.9e-66 Score=635.29 Aligned_cols=479 Identities=37% Similarity=0.609 Sum_probs=382.8
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCC---CCCccccccccc-ccCCCCccCccccCccccccCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREE---SLLTDVPLFVSY-MVDTDFNWGYKTEKDERFCRGMSD 729 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~ 729 (1183)
+..+|||||||||++|+++|.+|||++|++|||||+|+.. ......|..... .....++|.|.+.+++. ..+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~ 77 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNN 77 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCC
Confidence 4568999999999999999999999679999999999753 122334433222 23456789998888776 667
Q ss_pred CeeeccccceecCcccccceeEeeCCccccchhhcc-CCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccC-
Q psy8892 730 QTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQT- 807 (1183)
Q Consensus 730 ~~~~~~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~- 807 (1183)
+.+.|++|+++||+|.+|+|++.|+.+.||+.|+.. |+.+|+|++|+|||+|+|++... ...+|+..||+.+..+
T Consensus 78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGK 154 (560)
T ss_pred CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCCC
Confidence 789999999999999999999999999999999987 88999999999999999998732 2346788899988765
Q ss_pred CCCChHHHHHHHHHHHCCCCCC-CC-CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCC
Q psy8892 808 SWRTPLSAAFLEAGSELGYDQV-DH-CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITK 885 (1183)
Q Consensus 808 ~~~~~~~~~~~~~~~~~G~~~~-d~-~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~g 885 (1183)
....+..+.|.++++++|++.. +. ++...|++.+...|..|.|.++..+||.++.++.|++|++++.|++|++++ +
T Consensus 155 ~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~--~ 232 (560)
T PRK02106 155 PGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--K 232 (560)
T ss_pred CCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeC--C
Confidence 4556788899999999999875 55 556778888777888999999999999988888999999999999999985 7
Q ss_pred eEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC-CCcccccccccceEEEEEcCc
Q psy8892 886 RTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNMQDHLSMAGLVFLVNSS 964 (1183)
Q Consensus 886 ra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp-VG~nl~dh~~~~~~~~~~~~~ 964 (1183)
+|+||++.+.++..++.++|+||||||+++||+||++|||||+++|+++||++++||| ||+|||||+.+ .+.|+++..
T Consensus 233 ~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~ 311 (560)
T PRK02106 233 RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQP 311 (560)
T ss_pred eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCC
Confidence 9999999876555556666999999999999999999999999999999999999999 99999999997 788887654
Q ss_pred ccccc--cccCChHHHHHHHhcCCCCCCCccccceEEEeecCCCCCCCCCCeeEeecCCcccCCCCCcchhhcccccccc
Q psy8892 965 VTIVE--SKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFY 1042 (1183)
Q Consensus 965 ~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1183)
..... ..+.......+|+..+.|+++. .......|++..... ..|++++.+.+..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~-------------- 374 (560)
T PRK02106 312 VSLYPALKWWNKPKIGAEWLFTGTGLGAS-NHFEAGGFIRSRAGV--DWPNIQYHFLPVAIRYDGS-------------- 374 (560)
T ss_pred cccccccchhhhhHHHHHHHhcCCCCccc-cccceeeEEecCCCC--CCCCeEEEEeeccccccCC--------------
Confidence 32211 1111122345787788898873 344455676643211 1577776554422110000
Q ss_pred cccccCCCCCCeEEEEEeeccccCCCcccCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhH
Q psy8892 1043 NKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQK 1122 (1183)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~l~~P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~ 1122 (1183)
.......+++.+.+++|+||| +|+|+|+||.+.|+|+++|+++|.|++.|+++++++++++++.+++.
T Consensus 375 -----~~~~~~~~~~~~~~~~P~srG-------~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 442 (560)
T PRK02106 375 -----NAVKGHGFQAHVGPMRSPSRG-------SVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDP 442 (560)
T ss_pred -----CCCCCCeEEEEEEecCCcceE-------EEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhh
Confidence 001123566777889999999 99999999999999999999999999999999999999999998888
Q ss_pred hhhccCCccCCCCCCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCcEEEcCC
Q psy8892 1123 YASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQICPHIADAVDRRGEIMLSS 1179 (1183)
Q Consensus 1123 ~~~~~~~~~~p~~~~~~~~s~~~~~~~i~~~~~t~~H~~gTc~Mg~~~~~~~Vvd~~ 1179 (1183)
+...+ ..|++ ...+|++|++||++...+.+|++|||+||+ ++ ..|||+.
T Consensus 443 ~~~~~---~~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~-d~-~sVVD~~ 491 (560)
T PRK02106 443 YRGRE---ISPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGT-DP-MAVVDPE 491 (560)
T ss_pred ccccc---cCCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCC-CC-CeeECCC
Confidence 75433 35654 357899999999999999999999999997 44 6899875
No 5
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.3e-63 Score=610.26 Aligned_cols=493 Identities=35% Similarity=0.539 Sum_probs=374.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCC---CCCcccccccccc-cCCCCCCCcccccCCCcccCCCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEE---IILDEIPLFVSHI-VSSDFNWGYTTEKTDGICKGMKN 119 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~---~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (1183)
+.++|||||||||++|+++|.+||+++|++|||||+|+.. ......|...... ....++|.|.+.++.. ..+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~ 77 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNN 77 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCC
Confidence 4567999999999999999999999449999999999753 1222233322221 2344678887776654 466
Q ss_pred CeeccCCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHc-CCCCCCccch
Q psy8892 120 QRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAAL-GNIGWSFEEV 198 (1183)
Q Consensus 120 ~~~~~~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~-~~~~w~~~~l 198 (1183)
+.+.|.+|+++||+|.+|++.|. |+.+.||+.|+.. ++.+|+|+++
T Consensus 78 ~~~~~~~g~~lGGsS~iN~~~~~---------------------------------R~~~~Dfd~w~~~~g~~~Ws~~~l 124 (560)
T PRK02106 78 RRMECPRGKVLGGSSSINGMVYI---------------------------------RGNAMDYDNWAELPGLEGWSYADC 124 (560)
T ss_pred CeeecccccccCCCCCccceEEe---------------------------------cCCHHHHHHHHhhcCCCCCCHHHH
Confidence 78899999999999999999999 9999999999986 8889999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCcceeecCC-CCCchHHHHHHHHHHHcCCC-CCCCCCCCCcceeeeecccCCCcccc
Q psy8892 199 LPYFKKSEDMKTAELKSSPYHGVGGYLKIERP-LWRTPLAKCVLDAGHEMGYD-IVDPSEPNAIGFSYVLANTGNGERYS 276 (1183)
Q Consensus 199 ~~~~~~~e~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s 276 (1183)
+|||+++|.+.. ...++++..|++.+..+ ....+..+.+.++++++|++ ..+.+.....++..|...|..|.|++
T Consensus 125 ~py~~k~E~~~~---~~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s 201 (560)
T PRK02106 125 LPYFKKAETRDG---GEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWS 201 (560)
T ss_pred HHHHHHhhccCC---CCccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEC
Confidence 999999998862 22346778888888765 45577888899999999998 55666666778887877888999999
Q ss_pred hhhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCChhh
Q psy8892 277 ASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGPRDH 356 (1183)
Q Consensus 277 ~~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~~~ 356 (1183)
+..++|.++.+++|++|++++.|++|+++++ +++||++.+.+...++.++|+||||||+|+||+|||+|||||+++
T Consensus 202 ~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~----~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~ 277 (560)
T PRK02106 202 AARAYLDPALKRPNLTIVTHALTDRILFEGK----RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEH 277 (560)
T ss_pred hHHHhhccccCCCCcEEEcCCEEEEEEEeCC----eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHH
Confidence 9999999988889999999999999999865 999999987655556666678999999999999999999999999
Q ss_pred hhhcCCCceecCc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCccccccccccccccccccccccccchhchh
Q psy8892 357 LEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLV 435 (1183)
Q Consensus 357 l~~~gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (1183)
|+++||++++|+| ||+|||||+.+.+ .+.++.+....... ..
T Consensus 278 L~~~gI~~~~dlP~VG~NL~dH~~~~~-~~~~~~~~~~~~~~-------------------------------~~----- 320 (560)
T PRK02106 278 LKELGIPVVHDLPGVGENLQDHLEVYI-QYECKQPVSLYPAL-------------------------------KW----- 320 (560)
T ss_pred HHhcCCceEeeCCCCCcChhhCccceE-EEEeCCCccccccc-------------------------------ch-----
Confidence 9999999999999 9999999987764 67665432100000 00
Q ss_pred hhcccchhhhhhcccchhhHHHHHHhCCCCCcCcccccEEEEEeccCCCCCCCCcEeEeecCCccCCCCCcccccccccc
Q psy8892 436 FLVNDSVTIVESQFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGIS 515 (1183)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1183)
+.......+|+..+.|++... ......|..... ....|++++.+.+..+.....
T Consensus 321 -------------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~---------- 374 (560)
T PRK02106 321 -------------WNKPKIGAEWLFTGTGLGASN-HFEAGGFIRSRA--GVDWPNIQYHFLPVAIRYDGS---------- 374 (560)
T ss_pred -------------hhhhHHHHHHHhcCCCCcccc-ccceeeEEecCC--CCCCCCeEEEEeeccccccCC----------
Confidence 000111245666677876543 223445554321 123466665543322110000
Q ss_pred hhhhhcccCCCCCCCeEEEEeeecccCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhcccccc--c
Q psy8892 516 DKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLV--L 593 (1183)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~--~ 593 (1183)
.......+++...+++|.|||+|+|+++||++.|.|+++|+.+|.|++.|.+++++++++++...... .
T Consensus 375 ---------~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~ 445 (560)
T PRK02106 375 ---------NAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRG 445 (560)
T ss_pred ---------CCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccc
Confidence 00011346666788999999999999999999999999999999999999999999999986543211 1
Q ss_pred cccCCCCc---cchHHHHHHhccc-------cc-cc---ccccCCcceeeeccccccccccccccccccccccc
Q psy8892 594 SVAHAQSQ---LFRTECALFSLVC-------HL-LL---LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKI 653 (1183)
Q Consensus 594 ~~~~~g~~---~~~~~~~~~~~~~-------t~-~g---~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~~ 653 (1183)
.+..|+.. ...+++|+++... |+ || +||||++|||| |++||||||+||||+.++.||+.
T Consensus 446 ~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~-Gv~nLrVvDaSv~P~~~~~np~~ 518 (560)
T PRK02106 446 REISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVH-GVEGLRVVDASIMPTITNGNLNA 518 (560)
T ss_pred cccCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEe-ccCCeEEeeccccCCCCCcchHH
Confidence 22233332 2357888766543 33 66 79999999999 99999999999999999999998
No 6
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.3e-62 Score=598.56 Aligned_cols=488 Identities=34% Similarity=0.504 Sum_probs=371.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC---CCccccccccc-ccCCCCCCCcccccCCCcccCCCCCeecc
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI---ILDEIPLFVSH-IVSSDFNWGYTTEKTDGICKGMKNQRCNW 124 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1183)
||||||||++|+++|.+||++++.+|||||+|+... .....|..... .....++|.|.+.++.. ..++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999998337999999997532 22233332222 22344678887777765 46788999
Q ss_pred CCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHH-cCCCCCCccchHHHHH
Q psy8892 125 PRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAA-LGNIGWSFEEVLPYFK 203 (1183)
Q Consensus 125 ~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~-~~~~~w~~~~l~~~~~ 203 (1183)
++|+++||+|.+|++.|. |+.+.||+.|+. .++.+|+|++++|||+
T Consensus 77 ~~g~~lGGss~in~~~~~---------------------------------R~~~~d~~~w~~~~g~~~W~~~~l~py~~ 123 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQ---------------------------------RGNPMDYEKWAKPEGMESWDYADCLPYYK 123 (532)
T ss_pred ecccccCCCCCEeeeEEe---------------------------------cCCHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999999999999999 999999999987 7888999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCcceeecCCCCCchHHHHHHHHHHHcCCC-CCCCCCCCCcceeeeecccCCCcccchhhhhh
Q psy8892 204 KSEDMKTAELKSSPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYD-IVDPSEPNAIGFSYVLANTGNGERYSASRAFL 282 (1183)
Q Consensus 204 ~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l 282 (1183)
++|..... ..++|+..|++.+..+....+..+.+.++++++|++ ..+++.....+++.+...|..|.|+++..+|+
T Consensus 124 ~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l 200 (532)
T TIGR01810 124 RLETTFGG---EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYL 200 (532)
T ss_pred HHhccCCC---CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHh
Confidence 99988642 236788899999887777778889999999999998 55666666677777777788999999999999
Q ss_pred hcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCChhhhhhcCC
Q psy8892 283 RPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNI 362 (1183)
Q Consensus 283 ~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~~~l~~~gi 362 (1183)
.++.+++|++|+++++|++|+++++ +|+||++.++++..++.++|+||||||+++||+||++|||||+++|+++||
T Consensus 201 ~~a~~r~nl~i~~~~~V~rI~~~~~----ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI 276 (532)
T TIGR01810 201 HPAMKRPNLEVQTRAFVTKINFEGN----RATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGI 276 (532)
T ss_pred hhhccCCCeEEEeCCEEEEEEecCC----eEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCC
Confidence 9888889999999999999999865 999999987655555656678999999999999999999999999999999
Q ss_pred CceecCc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCccccccccccccccccccccccccchhchhhhcccc
Q psy8892 363 PVIQDLK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDS 441 (1183)
Q Consensus 363 ~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (1183)
++++|+| ||+|||||+.+.+ .+..+.+...... + ..+
T Consensus 277 ~~~~~lp~VG~nL~DH~~~~~-~~~~~~~~~~~~~--------------------------~-----~~~---------- 314 (532)
T TIGR01810 277 EPRIHLPGVGENLQDHLEVYV-QHACKQPVSLYPS--------------------------L-----NWL---------- 314 (532)
T ss_pred CeEeeCCccccchhhccccee-EEEecCCcccccc--------------------------c-----chh----------
Confidence 9999999 9999999987655 6666543110000 0 000
Q ss_pred hhhhhhcccchhhHHHHHHhCCCCCcCcccccEEEEEeccCCCCCCCCcEeEeecCCccCCCCCcccccccccchhhhhc
Q psy8892 442 VTIVESQFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGISDKFYRK 521 (1183)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1183)
..+....+|...+.|++... .....+|.... .....|++++.+.+...... +
T Consensus 315 --------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~-~---------------- 366 (532)
T TIGR01810 315 --------KQPFIGAQWLFGRKGAGASN-HFEGGGFVRSN--DDVDYPNIQYHFLPVAIRYD-G---------------- 366 (532)
T ss_pred --------hhhHHHHHHHhcCCCCcccc-ccceeEEEecC--CCCCCCCeEEEEEeeeeccC-C----------------
Confidence 00011235666667765542 23344555432 11234666665443211100 0
Q ss_pred ccCCCCCCCeEEEEeeecccCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhcccccc--ccccCCC
Q psy8892 522 VYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLV--LSVAHAQ 599 (1183)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g 599 (1183)
........+++...+++|.|||+|+|+++||++.|.|+++|+.+|.|++.|+++++++++++++..+.. ..+..|+
T Consensus 367 --~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~ 444 (532)
T TIGR01810 367 --TKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPG 444 (532)
T ss_pred --CCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCC
Confidence 000011235666778999999999999999999999999999999999999999999999986543321 1222333
Q ss_pred Cc---cchHHHHHHhccc-------cc-cc-----ccccCCcceeeeccccccccccccccccccccccc
Q psy8892 600 SQ---LFRTECALFSLVC-------HL-LL-----LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKI 653 (1183)
Q Consensus 600 ~~---~~~~~~~~~~~~~-------t~-~g-----~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~~ 653 (1183)
.. ...+++|+++... || || +||||++|||| ||+||||||+||||+++..||+.
T Consensus 445 ~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~-Gv~nLrVvDaSv~P~~~~~n~~~ 513 (532)
T TIGR01810 445 PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVH-GMEGLRVVDASIMPRITNGNLNA 513 (532)
T ss_pred CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEe-ccCCcEEeeeccCCCCCCCccHH
Confidence 32 2358888877543 33 66 58999999999 99999999999999999999987
No 7
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-59 Score=561.71 Aligned_cols=478 Identities=35% Similarity=0.589 Sum_probs=389.8
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC-CcccccccccccCC-CCccCccccCccccccCCCCCe
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESL-LTDVPLFVSYMVDT-DFNWGYKTEKDERFCRGMSDQT 731 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~ 731 (1183)
+..+|||||||||.+|+++|.+|++ +|++|+|||+|+.... ....|..+...... ..+|.|.+.++.. +.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCcc
Confidence 3568999999999999999999996 8999999999985433 44556555555554 7899999998885 88999
Q ss_pred eeccccceecCcccccceeEeeCCccccchhhcc-CCCCCCccchHHHHHHhhcccCCCCCC-CCCCCCCCccccccCCC
Q psy8892 732 CNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSYRDVLPYFKKSEDISVSRLKG-SPYHGIGGYLKVEQTSW 809 (1183)
Q Consensus 732 ~~~~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~l~py~~k~e~~~~~~~~~-~~~~~~~G~~~~~~~~~ 809 (1183)
+.|++|+++||+|.+|+|+|.|+.+.||+.|... |+.+|.|++++|||+++|++......+ ...|+..||+.+.....
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999876 779999999999999999976542222 45789999999988766
Q ss_pred CChHHHHHHHHHHHCCCCCC-CC-CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeE
Q psy8892 810 RTPLSAAFLEAGSELGYDQV-DH-CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRT 887 (1183)
Q Consensus 810 ~~~~~~~~~~~~~~~G~~~~-d~-~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra 887 (1183)
..+..+.+.++++++|++.. ++ +....|++.+...+.+|.|.++..+||.++.+++|++|++++.|++|++++ +|+
T Consensus 159 ~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~--~r~ 236 (542)
T COG2303 159 PNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--DRA 236 (542)
T ss_pred chHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEEC--Cee
Confidence 68899999999999999987 44 666668888777777999999999999999999999999999999999998 799
Q ss_pred EEEEEeeCCe--EEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC-CCcccccccccceEEEEEcCc
Q psy8892 888 YGVEFSKNRK--SYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNMQDHLSMAGLVFLVNSS 964 (1183)
Q Consensus 888 ~GV~~~~~~~--~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp-VG~nl~dh~~~~~~~~~~~~~ 964 (1183)
+||++...+. .....+.++||||||+++||+||++||||+.+.|.++||.++.++| ||+|||||..+ .+.+..+..
T Consensus 237 ~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~ 315 (542)
T COG2303 237 VGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEP 315 (542)
T ss_pred EEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCc
Confidence 9999986432 3455566999999999999999999999999999999999999999 99999999986 677766554
Q ss_pred cc-ccccccCCh-HHHHHHHhcCCCCCCCccccceEEEeecCCCCCCCCCCeeEeecCCcccCCCCCcchhhcccccccc
Q psy8892 965 VT-IVESKYTKP-RYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFY 1042 (1183)
Q Consensus 965 ~~-~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1183)
.. ......... ....+|...++|+.++ +..... |+.+..... .||.++++.+......
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~g-f~~~~~~~~--~p~~~~~~~~~~~~~~---------------- 375 (542)
T COG2303 316 TNDSVLSLFSKLGIGADRYLLTRDGPGAT-NHFEGG-FVRSGPAGE--YPDGQYHFAPLPLAIR---------------- 375 (542)
T ss_pred cccccccccccccccceeEEeecCCCccc-cccccc-ccccCcccc--CCCccccccccccccc----------------
Confidence 30 000111111 1225677778898773 334343 776654332 6888877654332110
Q ss_pred cccccCCCCCCeEEEEEeeccccCCCcccCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhH
Q psy8892 1043 NKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQK 1122 (1183)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~l~~P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~ 1122 (1183)
.......+++.....+|.||| +|+++|.||...|.|++||++++.|++.++++++.+++++.+.++..
T Consensus 376 -----~~~~~~~~~~~~~~~rp~srg-------~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~ 443 (542)
T COG2303 376 -----AAGAEHGFTLHVGPMRPKSRG-------SVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDA 443 (542)
T ss_pred -----ccccCCccEEeeccCCCcccc-------ceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchh
Confidence 123356788899999999999 99999999999999999999999999999999999999999888887
Q ss_pred hhhccCCccCCCCCCCCCCCHHHHHHHHHhcCCCCcccccccccccCCCCcEEEcC
Q psy8892 1123 YASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQICPHIADAVDRRGEIMLS 1178 (1183)
Q Consensus 1123 ~~~~~~~~~~p~~~~~~~~s~~~~~~~i~~~~~t~~H~~gTc~Mg~~~~~~~Vvd~ 1178 (1183)
+...+. .|+. ...+++++.+|++....|.+|++|||+|| .+...+|+|+
T Consensus 444 ~~~~e~---~~~~---~~~~~~~~~~~~~~~~~t~~H~~GT~rMG-~Dp~~~V~d~ 492 (542)
T COG2303 444 RRKAEL---APGP---RVTTDEDISAAIRFLARTAYHPMGTCRMG-SDPAAVVDDP 492 (542)
T ss_pred hHHHhh---cCCC---ccccHHHHHHHHHhccCccccccccccCC-CCchhhcccc
Confidence 766543 5654 46899999999999999999999999999 4444455444
No 8
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=7.3e-58 Score=551.79 Aligned_cols=470 Identities=21% Similarity=0.275 Sum_probs=319.7
Q ss_pred ccccccccccccc-ccccccccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCcccccccccccCCCCcc
Q psy8892 635 MVSKDAILTPSNI-VQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNW 713 (1183)
Q Consensus 635 LrV~D~s~~p~~~-~~np~~~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w 713 (1183)
=+|.|++-+|... +...+-...+|||||||+|.||+++|.+|++ +.+|||||+|+.+.....+... ..+.....+|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~ 108 (587)
T PLN02785 32 PFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFL-ENFHIGLADT 108 (587)
T ss_pred chhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhH-HhhCCccccc
Confidence 4677888888732 1222223457999999999999999999999 4899999999854221122111 1223445789
Q ss_pred CccccCccccccCCCCCeeeccccceecCcccccceeEeeCCccccchhhccCCCCCCccchHHHHHHhhcccCCCCCCC
Q psy8892 714 GYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGS 793 (1183)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~ 793 (1183)
.|.+.++.. ..++.+.+++||++||+|++|+|+|.|+++.||+. .+|+|+.+.+||++.|+...
T Consensus 109 ~~~~~~q~~----~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~------ 172 (587)
T PLN02785 109 SPTSASQAF----ISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV------ 172 (587)
T ss_pred CCccccccc----cCCCceeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc------
Confidence 999888765 56788999999999999999999999999999964 48999999999999987521
Q ss_pred CCCCCCCccccccCCCCChHHHHHHHHHHHCCCCCC-CCC-CCCceeeeecccc--cCCccchHHHhhhhhhhcCCCcEE
Q psy8892 794 PYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYDQV-DHC-ENPIGFSYVLANK--IRGARQSASKAFIRPIRKRHNLKV 869 (1183)
Q Consensus 794 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-d~~-~~~~g~~~~~~~~--~~g~r~~~~~~~L~~~~~~~g~~i 869 (1183)
..+...+....+++++.++|++.. ... ....|.... ..+ ..|.|.+++. + .+.++++|++|
T Consensus 173 ------------~~~~~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g-~~i~~~~g~R~saa~-l-~~~~~~~nl~V 237 (587)
T PLN02785 173 ------------HWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVG-GTIFDEFGRRHTAAE-L-LAAGNPNKLRV 237 (587)
T ss_pred ------------cCCCcChHHHHHHHHHHHcCCCccCCCCCCCccceeee-EEEeCCCCEEcCHHH-H-HhhcCCCCeEE
Confidence 011234567899999999999642 111 111111111 122 4578888776 3 35677899999
Q ss_pred EcCcEEEEEEEcCCC--CeEEEEEEee-CCeEEEE----EeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccC
Q psy8892 870 AKEARVTKILIDPIT--KRTYGVEFSK-NRKSYTV----KCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDL 942 (1183)
Q Consensus 870 ~~~t~V~~I~~~~~~--gra~GV~~~~-~~~~~~i----~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dl 942 (1183)
++++.|+||++++.+ ++|+||++.+ +++.+++ +++|+||||||+++||+|||+|||||+++|+++||+|++|+
T Consensus 238 l~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dl 317 (587)
T PLN02785 238 LLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHN 317 (587)
T ss_pred EeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecC
Confidence 999999999998632 3899999975 4544443 25689999999999999999999999999999999999999
Q ss_pred C-CCcccccccccceEEEEEcCcccccccccCChHHHHHHHhcCCCCCCCccccceEEEeecCCCCCCCCCCeeEeecC-
Q psy8892 943 K-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGP- 1020 (1183)
Q Consensus 943 p-VG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~- 1020 (1183)
| ||+|||||+.. .+.+..+.... ......+.....|++.... . +|......-....+.+......
T Consensus 318 P~VG~NL~DHp~~-~i~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 384 (587)
T PLN02785 318 EHVGKGMADNPMN-SIFVPSKAPVE--------QSLIQTVGITKMGVYIEAS-S---GFGQSPDSIHCHHGIMSAEIGQL 384 (587)
T ss_pred CCcccchhhCccc-ceEEEeCCCch--------hhhHhhhhhhccccceecc-c---ccccCchhhhhhccccccccccc
Confidence 9 99999999986 67776654321 0011122233345542100 0 1111000000000000000000
Q ss_pred CcccCCC--CCcchhhcccccccccccccCCCCCCeEEEEEeeccccCCCcccCcceEEEecCCCCCCCCeeecCCCCCh
Q psy8892 1021 GALTGDS--GGSLRKVLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDS 1098 (1183)
Q Consensus 1021 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~ 1098 (1183)
....... .+.+...+. .. .. + +........+...+++|+||| +|+|+|+||.+.|.|++|||+||
T Consensus 385 ~~~~~~~~~~~~~~~~~~---~~-~~-~-~~~~~~~~~~~~~l~~P~SrG-------~V~L~ssdp~~~P~i~~ny~~~p 451 (587)
T PLN02785 385 STIPPKQRTPEAIQAYIH---RK-KN-L-PHEAFNGGFILEKIAGPISTG-------HLSLINTNVDDNPSVTFNYFKHP 451 (587)
T ss_pred cccCcccccchhhhhhcc---Cc-cc-c-cccccccceEEEEecCCCcce-------EEEecCCCCCcCCccccccCCCH
Confidence 0000000 000000000 00 00 0 000011123456789999999 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcChhhhHhhhccCC--c------------cCCCCCCCCCCCHHHHHHHHHhcCCCCccccccc
Q psy8892 1099 RDLDVLIEAIKMAVELSETRAMQKYASKLLP--V------------KFPGCEPYEFRSDEYWACAARQLTTNLHHQICPH 1164 (1183)
Q Consensus 1099 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~p~~~~~~~~s~~~~~~~i~~~~~t~~H~~gTc 1164 (1183)
.|++.+++++|.+++++++++|+++...+.. + ..|+ ...+|++|++|+|+++.|.||++|||
T Consensus 452 ~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc 527 (587)
T PLN02785 452 QDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGC 527 (587)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCC----CCCCHHHHHHHHHHhcccccCCcccc
Confidence 9999999999999999999999987633221 0 1122 24688999999999999999999999
Q ss_pred cccc
Q psy8892 1165 IADA 1168 (1183)
Q Consensus 1165 ~Mg~ 1168 (1183)
+||.
T Consensus 528 ~MG~ 531 (587)
T PLN02785 528 HVGK 531 (587)
T ss_pred cCCC
Confidence 9994
No 9
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=530.08 Aligned_cols=492 Identities=34% Similarity=0.560 Sum_probs=382.1
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCCC-CcccccccccccCC-CCCCCcccccCCCcccCCCCC
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEII-LDEIPLFVSHIVSS-DFNWGYTTEKTDGICKGMKNQ 120 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (1183)
.+..+|||||||||.+|+++|.+|++. |++|||||+|+.... ....|......... ..+|.+.+.++.. ..++
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r 77 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGR 77 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCc
Confidence 456789999999999999999999954 999999999986433 34455555454444 7889999988874 6889
Q ss_pred eeccCCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHc-CCCCCCccchH
Q psy8892 121 RCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAAL-GNIGWSFEEVL 199 (1183)
Q Consensus 121 ~~~~~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~-~~~~w~~~~l~ 199 (1183)
.+.|++++++||+|.+|++.|. |+.+.||+.|... +..+|.|++++
T Consensus 78 ~~~~~rgk~lGGsS~ing~~~~---------------------------------R~~~~Df~~w~~~~G~~~W~y~d~l 124 (542)
T COG2303 78 ELAWPRGKVLGGSSSINGMVYV---------------------------------RGHPEDFDAWAQESGAPGWPYDDVL 124 (542)
T ss_pred cccccccCcccchhhhccceee---------------------------------cCCHHHHHHHHhhcCCCCCCccccH
Confidence 9999999999999999999999 9999999999874 67999999999
Q ss_pred HHHHHhccCCCCCCCC-CCCCCCCcceeecCCCCCchHHHHHHHHHHHcCCC-CCCCCCCCCcceeeeecccCCCcccch
Q psy8892 200 PYFKKSEDMKTAELKS-SPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYD-IVDPSEPNAIGFSYVLANTGNGERYSA 277 (1183)
Q Consensus 200 ~~~~~~e~~~~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~ 277 (1183)
|||+++|++....... ...++..|++.+.......+..+.+.+++.++|++ ..+++.....|++.+...+..|.|+++
T Consensus 125 Pyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa 204 (542)
T COG2303 125 PYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSA 204 (542)
T ss_pred HHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeec
Confidence 9999999977653332 45788889999888866788999999999999999 677787777777776666559999999
Q ss_pred hhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCe--EEEEEeCcEEEEcCCCCCChHHHHHhCCCChh
Q psy8892 278 SRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQ--RHTVRARKEVILSAGALNSPQLLMLSGIGPRD 355 (1183)
Q Consensus 278 ~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~--~~~i~A~k~VILAAGai~sp~LLl~SGig~~~ 355 (1183)
..++|.++.+++|++|++++.|++|+++++ +++||++..++. .....+.++||||||+|+||+|||+||||+.+
T Consensus 205 ~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~----r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~ 280 (542)
T COG2303 205 ARAYLKPALKRPNLTLLTGARVRRILLEGD----RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPAD 280 (542)
T ss_pred hhhcchhHhcCCceEEecCCEEEEEEEECC----eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchh
Confidence 999999999999999999999999999998 999999986432 34555667899999999999999999999999
Q ss_pred hhhhcCCCceecCc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCccccccccccccccccccccccccchhch
Q psy8892 356 HLEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGL 434 (1183)
Q Consensus 356 ~l~~~gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1183)
.+..++|.++.++| ||+|||||+.+.+ .+..+... .... +
T Consensus 281 ~~~~~g~~~v~~~~~vg~nl~dH~~~~~-~~~~~~~~--~~~~-------------------------~----------- 321 (542)
T COG2303 281 HLLEHGIDVVGRLPGVGQNLQDHLEIYV-AFEATEPT--NDSV-------------------------L----------- 321 (542)
T ss_pred hhhhcCCeeeecCcchhHHHHhhhhhhh-heeccCcc--cccc-------------------------c-----------
Confidence 99999999999999 9999999987665 55544432 0000 0
Q ss_pred hhhcccchhhhhhcccchhhH-HHHHHhCCCCCcCcccccEEEEEeccCCCCCCCCcEeEeecCCccCCCCCcccccccc
Q psy8892 435 VFLVNDSVTIVESQFQKPRYI-VDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLG 513 (1183)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1183)
..+.+.... ..|...+.|+..... .+.. |...... ...|++++++.+..+...
T Consensus 322 ------------~~~~~~~~~~~~~~~~~~G~~~~~~-~~~g-f~~~~~~--~~~p~~~~~~~~~~~~~~---------- 375 (542)
T COG2303 322 ------------SLFSKLGIGADRYLLTRDGPGATNH-FEGG-FVRSGPA--GEYPDGQYHFAPLPLAIR---------- 375 (542)
T ss_pred ------------cccccccccceeEEeecCCCccccc-cccc-ccccCcc--ccCCCccccccccccccc----------
Confidence 000000001 234445667655421 1222 5444322 456777776655322210
Q ss_pred cchhhhhcccCCCCCCCeEEEEeeecccCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhcccc--c
Q psy8892 514 ISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHL--L 591 (1183)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~--~ 591 (1183)
.......+++.....+|.|+|+|++++.||...|.|++||++++.|++.+.++++..++++.+..+ .
T Consensus 376 -----------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~ 444 (542)
T COG2303 376 -----------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDAR 444 (542)
T ss_pred -----------ccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhh
Confidence 112236788899999999999999999999999999999999999999999999999999753322 2
Q ss_pred cccccCCCCccc---hHHHHHHhccc-------cc-cc----ccccCCcceeeeccccccccccccccccccccccc
Q psy8892 592 VLSVAHAQSQLF---RTECALFSLVC-------HL-LL----LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKI 653 (1183)
Q Consensus 592 ~~~~~~~g~~~~---~~~~~~~~~~~-------t~-~g----~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~~ 653 (1183)
...+..++.... ++..|++.... |+ || .+|+|++|||| |++||||||+|+||++++.||++
T Consensus 445 ~~~e~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~-g~~nL~VvDaSvmPt~~~~Np~~ 520 (542)
T COG2303 445 RKAELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVH-GLENLRVVDASVMPTSTGVNPNL 520 (542)
T ss_pred HHHhhcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccc-cCCCeEEeCcccCcCccCCCccH
Confidence 234444444332 35566655543 44 66 45555999999 99999999999999999999998
No 10
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.6e-54 Score=522.78 Aligned_cols=477 Identities=22% Similarity=0.260 Sum_probs=311.0
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCCCCcccccccccccCCCCCCCcccccCCCcccCCCCCee
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWGYTTEKTDGICKGMKNQRC 122 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1183)
....+|||||||+|.+||++|.+|++ +.+|||||+|+.+.....+.. ...+.....+|.+.+.++.. ..++.+
T Consensus 51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~~----~~~~~~ 123 (587)
T PLN02785 51 GGDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQAF----ISTDGV 123 (587)
T ss_pred cccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCccccccc----cCCCce
Confidence 34567999999999999999999998 489999999985321111111 11122334578888777654 457778
Q ss_pred ccCCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHcCCCCCCccchHHHH
Q psy8892 123 NWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYF 202 (1183)
Q Consensus 123 ~~~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~~~~~w~~~~l~~~~ 202 (1183)
.+++||++||+|++|++.|. |+.+.+|+ ..+|+|+.+.++|
T Consensus 124 ~~~rGr~LGGsS~iN~~~y~---------------------------------Rg~~~d~~------~~GW~~~~~~~~~ 164 (587)
T PLN02785 124 INARARVLGGGTCINAGFYS---------------------------------RASTRFIQ------KAGWDAKLVNESY 164 (587)
T ss_pred eccccceecchhhhcCeEEE---------------------------------eCCHHHhc------cCCCCcccccchH
Confidence 99999999999999999999 88888885 2579999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCcceeecCCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCcceeeeecc-cCCCcccchhhh
Q psy8892 203 KKSEDMKTAELKSSPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDI-VDPSEPNAIGFSYVLAN-TGNGERYSASRA 280 (1183)
Q Consensus 203 ~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~-~~~g~r~s~~~~ 280 (1183)
++.|+... ......+....+.++++++|++. .........|....... ...|.|+++..
T Consensus 165 ~~~e~~~~------------------~~~~~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~- 225 (587)
T PLN02785 165 PWVERQIV------------------HWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAE- 225 (587)
T ss_pred HHHhcccc------------------cCCCcChHHHHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHH-
Confidence 99987521 00112456788899999999972 11111111111111111 14577877765
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe-CCeEEEE----EeCcEEEEcCCCCCChHHHHHhCCCChh
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK-NKQRHTV----RARKEVILSAGALNSPQLLMLSGIGPRD 355 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~-~g~~~~i----~A~k~VILAAGai~sp~LLl~SGig~~~ 355 (1183)
++ +..+++|++|++++.|++|++++++...+++||++.+ ++.++++ +++++||||||+|+||+|||+|||||++
T Consensus 226 l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~ 304 (587)
T PLN02785 226 LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKK 304 (587)
T ss_pred HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHH
Confidence 33 4667889999999999999998643222899999986 4444433 2567999999999999999999999999
Q ss_pred hhhhcCCCceecCc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCccccccccccccccccccccccccchhch
Q psy8892 356 HLEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGL 434 (1183)
Q Consensus 356 ~l~~~gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1183)
+|+++|||+++|+| ||+||+|||...+ .+..+.+... ... . .......|+ +
T Consensus 305 ~L~~~gIpvv~dlP~VG~NL~DHp~~~i-~~~~~~~~~~-~~~--~--------------~~~~~~~g~-------~--- 356 (587)
T PLN02785 305 ELKKHKIPVVLHNEHVGKGMADNPMNSI-FVPSKAPVEQ-SLI--Q--------------TVGITKMGV-------Y--- 356 (587)
T ss_pred HHHHcCCCeeecCCCcccchhhCcccce-EEEeCCCchh-hhH--h--------------hhhhhcccc-------c---
Confidence 99999999999999 9999999987665 5655443210 000 0 000000000 0
Q ss_pred hhhcccchhhhhhcccchhhHHHHHHhCCCCCcCcccccEEEEEeccCCCCCCCCcEeEeecCCccCCCCCccccccccc
Q psy8892 435 VFLVNDSVTIVESQFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGI 514 (1183)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1183)
...+ ..+.... . ......++++.. ...+... ......++. +...+.
T Consensus 357 --~~~~------~~~~~~~--~-~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~----------------~~~~~~- 402 (587)
T PLN02785 357 --IEAS------SGFGQSP--D-SIHCHHGIMSAE----IGQLSTI--PPKQRTPEA----------------IQAYIH- 402 (587)
T ss_pred --eecc------cccccCc--h-hhhhhccccccc----ccccccc--Ccccccchh----------------hhhhcc-
Confidence 0000 0000000 0 000000111100 0000000 000000000 000000
Q ss_pred chhhhhcccCCCCCCCeEEEEeeecccCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhccccccc-
Q psy8892 515 SDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLVL- 593 (1183)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~- 593 (1183)
.. . .. +........+...+++|.|||+|+|+|+||++.|.|++||+.+|.|++.+++++|++++++++..+...
T Consensus 403 ~~---~-~~-~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~ 477 (587)
T PLN02785 403 RK---K-NL-PHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFT 477 (587)
T ss_pred Cc---c-cc-cccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhc
Confidence 00 0 00 000001123456788999999999999999999999999999999999999999999999866542110
Q ss_pred -cc-----------------cCCC--CccchHHHHHHhccccc---cc----ccccCCcceeeecccccccccccccccc
Q psy8892 594 -SV-----------------AHAQ--SQLFRTECALFSLVCHL---LL----LSVAHAQSQLFRTFINMVSKDAILTPSN 646 (1183)
Q Consensus 594 -~~-----------------~~~g--~~~~~~~~~~~~~~~t~---~g----~~VVD~~~rV~~gv~nLrV~D~s~~p~~ 646 (1183)
.+ ..|+ .....|++|+++...|. +| ++|||+++||| ||+||||||+||||.+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~-GV~~LRVvDaSi~P~~ 556 (587)
T PLN02785 478 QCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVL-GVSRLRVIDGSTFDES 556 (587)
T ss_pred cccccccccccccccccccccCCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEe-ccCCeEEeecccCCCC
Confidence 00 0122 12245899999987655 33 67999999999 9999999999999999
Q ss_pred ccccccc
Q psy8892 647 IVQDTKI 653 (1183)
Q Consensus 647 ~~~np~~ 653 (1183)
++.||+.
T Consensus 557 p~~np~a 563 (587)
T PLN02785 557 PGTNPQA 563 (587)
T ss_pred CCCccHH
Confidence 9999986
No 11
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.2e-45 Score=418.54 Aligned_cols=288 Identities=42% Similarity=0.729 Sum_probs=230.9
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCcccc-cccccccCCCCccCccccCccccccCCCCCeeeccc
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVP-LFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWPR 736 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 736 (1183)
|||||||||++|+++|.+||++++.+|||||+|+........+ ..........++|.|.+.++.. +.++.+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 8999999999999999999995347999999998754333111 2223334566788888777766 7888899999
Q ss_pred cceecCcccccceeEeeCCccccchhhcc-CCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCcccc-ccCCCCChHH
Q psy8892 737 GKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKV-EQTSWRTPLS 814 (1183)
Q Consensus 737 G~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~ 814 (1183)
|+++||+|.+|+|++.|+++.||+.|... |.++|+|+++.+||+++|.+..+. ...++..+++.+ ..+....+..
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~~ 153 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPMN 153 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHHH
Confidence 99999999999999999999999999987 788899999999999999887763 566777888887 4455566777
Q ss_pred HHHHHHHHHCCCCCC-CC-CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEE
Q psy8892 815 AAFLEAGSELGYDQV-DH-CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEF 892 (1183)
Q Consensus 815 ~~~~~~~~~~G~~~~-d~-~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~ 892 (1183)
..+.++++++|++.. +. .....|++.....|..|.|.++..+||.++.+++|++|+++++|++|++++++++|+||++
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~ 233 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEY 233 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeee
Confidence 899999999999843 55 5566777666556999999999999999999888999999999999999755589999999
Q ss_pred eeCCeE--EEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCCCCccccccc
Q psy8892 893 SKNRKS--YTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLKVGYNMQDHL 952 (1183)
Q Consensus 893 ~~~~~~--~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlpVG~nl~dh~ 952 (1183)
.+.+.. ..+.++|+||||||+++||+||++||||++++|+++||++++|+|||+||||||
T Consensus 234 ~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 234 VDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 864433 444444899999999999999999999999999999999999999999999997
No 12
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1e-42 Score=394.46 Aligned_cols=289 Identities=44% Similarity=0.762 Sum_probs=221.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCCCCccccc-ccccccCCCCCCCcccccCCCcccCCCCCeeccCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPL-FVSHIVSSDFNWGYTTEKTDGICKGMKNQRCNWPR 126 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1183)
|||||||||++|+++|.+||++++++|||||+|+........+. .........+.|.+...++.. .+++.+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 89999999999999999999984479999999986543331111 122223445667666655544 5778888999
Q ss_pred CCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHc-CCCCCCccchHHHHHHh
Q psy8892 127 GKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAAL-GNIGWSFEEVLPYFKKS 205 (1183)
Q Consensus 127 g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~-~~~~w~~~~l~~~~~~~ 205 (1183)
|+++||+|.+|++.+. |+.+.||+.|... +..+|+|+++.+||+++
T Consensus 77 G~~lGGsS~in~~~~~---------------------------------R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~ 123 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYF---------------------------------RPSPSDFDEWAREFGADGWSWDDLEPYYDKA 123 (296)
T ss_dssp B-STTGGGGTS--BE----------------------------------B--HHHHHHHHHTTTCTTGSHHHHHHHHHHH
T ss_pred ceecCCcccccccccc---------------------------------cCCcccchhhhhcccccccchhhHHHHHHHH
Confidence 9999999999999998 9999999999985 77789999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcceee-cCCCCCchHHHHHHHHHHHcCCC-CCCCCCCCCcceeeeecccCCCcccchhhhhhh
Q psy8892 206 EDMKTAELKSSPYHGVGGYLKI-ERPLWRTPLAKCVLDAGHEMGYD-IVDPSEPNAIGFSYVLANTGNGERYSASRAFLR 283 (1183)
Q Consensus 206 e~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~ 283 (1183)
|....+. ...++..+++.+ .......+....+.++++++|++ ..+.+.....+++.....|+.|.|+++..+||.
T Consensus 124 e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~ 200 (296)
T PF00732_consen 124 ETFLGPS---SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLP 200 (296)
T ss_dssp EEEHTTB---GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHH
T ss_pred Hhhcccc---ccccccccccccccccCCCCHHHHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccc
Confidence 9876554 456667777877 44455567778899999999998 555555544444433334999999999999999
Q ss_pred cccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeE--EEEEeCcEEEEcCCCCCChHHHHHhCCCChhhhhhcC
Q psy8892 284 PIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQR--HTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEMN 361 (1183)
Q Consensus 284 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~--~~i~A~k~VILAAGai~sp~LLl~SGig~~~~l~~~g 361 (1183)
++.+++|++|+++|+|++|++++++. +|+||++.+.+.. .++.++|+||||||+|+||+|||+||||+...|+++|
T Consensus 201 ~a~~~~n~~l~~~~~V~~i~~~~~~~--~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~g 278 (296)
T PF00732_consen 201 PALKRPNLTLLTNARVTRIIFDGDGG--RATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALG 278 (296)
T ss_dssp HHTTTTTEEEEESEEEEEEEEETTST--EEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTT
T ss_pred hhhccCCccEEcCcEEEEEeeecccc--ceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcC
Confidence 99999999999999999999974433 9999999975433 4444546799999999999999999999999999999
Q ss_pred CCceecCccccccccCc
Q psy8892 362 IPVIQDLKVGYNLQDHV 378 (1183)
Q Consensus 362 i~~~~~~pVG~~l~dh~ 378 (1183)
|+++.|+|||+||||||
T Consensus 279 i~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 279 IPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp HHHSEE-TTTECEB--E
T ss_pred CCceeeCcchhchhccc
Confidence 99999999999999996
No 13
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=4.8e-37 Score=362.30 Aligned_cols=502 Identities=13% Similarity=0.125 Sum_probs=272.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCCCCcccccccccccCC-----CCCCCc---------ccccCCCc
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSS-----DFNWGY---------TTEKTDGI 113 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~-----~~~~~~---------~~~~~~~~ 113 (1183)
|||||||+|++|+++|+.|+++ |++|+|||+|..... +....+.++. +.+... ...|....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSF----LKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNL 75 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCC----CcccccccccccccccHHHHHHHHhhhccccccccccC
Confidence 7999999999999999999998 999999999985431 1001111110 000000 00000000
Q ss_pred c-cCCCCCeeccCCCCcccccccccceEEEeccCCCCCCCCCCCCCCCcccCCcccccccccCCCChhcHHHHHHcCCCC
Q psy8892 114 C-KGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIG 192 (1183)
Q Consensus 114 ~-~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~~~~~~~~~~~~~~~~vGG~s~~w~~~~~r~~~~d~~~w~~~~~~~ 192 (1183)
. ..+.. ..|. ...|.....|+ ..|.--.....+.....+.|||+|+||+|.++|..+++.+ |-. .++.
T Consensus 76 ~~~~~~~--~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~-g~~-~dWP 144 (544)
T TIGR02462 76 VIPTLDP--TAWS--ASIESFFVSNG-----KNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERP-KLS-DDAA 144 (544)
T ss_pred CcCCCCc--cccc--cCCCcceecCC-----CCcccCchhccChhheeeccCchhhhcCcccCCCCHHhcc-CCC-CCCC
Confidence 0 00000 0000 00111111111 0111111222233446789999999999999999986421 111 2444
Q ss_pred CCccchHHHHHHhccCCCCCCCCCCCCCCCcceeecCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcceeeeecccCCC
Q psy8892 193 WSFEEVLPYFKKSEDMKTAELKSSPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNG 272 (1183)
Q Consensus 193 w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g 272 (1183)
.+|++|+|||+++|+++...... + ..+.......+.+.+.++ |... . ......|..+ .|+.+
T Consensus 145 I~y~eL~PyY~~Ae~~~gv~g~~--~---------~~~~~~~~~~~~~~~~~~--g~~~--~-~~~PlA~~~~--~c~~~ 206 (544)
T TIGR02462 145 EDDAEWDRLYTKAESLIGTSTDQ--F---------DESIRHNLVLRKLQDEYK--GQRD--F-QPLPLACHRR--TDPTY 206 (544)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCc--C---------CCcccchhHHHHHHHHhc--cccc--c-ccCchhhhcc--CCCcc
Confidence 59999999999999997653310 0 111111222222333222 2210 0 0111112111 45667
Q ss_pred cccchhhhhhhccc----CCCCeEEEcCceEEEEEeeCCC-CcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 273 ERYSASRAFLRPIR----KRPNLKVAKRARVTKVLIDEND-NLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 273 ~r~s~~~~~l~~~~----~~~g~~i~~~~~V~~I~~~~~~-~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
.++++..+.+..+. +++|++|++++.|++|++++++ + +|+||++.+ +++.++++|+. ||||||+|+||||
T Consensus 207 ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~--~v~~v~~~d~~~g~~~~v~A~~-vVLAagaIetpRL 283 (544)
T TIGR02462 207 VEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNES--EIEAALVRDLLSGDRFEIKADV-YVLACGAVHNPQI 283 (544)
T ss_pred ceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCc--eeEEEEEEECCCCcEEEEECCE-EEEccCchhhHHH
Confidence 77776555554443 4788999999999999998643 2 899999987 57778899985 9999999999999
Q ss_pred HHHhCCCChhhhhhcCCCceec---Cc-cccccccCcccceEEEEEcCchhhhhHhhhcCCCCCcccccccccccccccc
Q psy8892 346 LMLSGIGPRDHLEEMNIPVIQD---LK-VGYNLQDHVSMAGLVFLVNDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKV 421 (1183)
Q Consensus 346 Ll~SGig~~~~l~~~gi~~~~~---~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1183)
||+|+++..... .-+.| ++ ||||||||+...+ .+.+.++. .... .++. ...
T Consensus 284 LL~S~~~~~~~p-----~gl~Nss~~g~VGRnlmdh~~~~~-~~~~~~~~--~~~~----~~~~---------~~~---- 338 (544)
T TIGR02462 284 LVNSGFGQLGRP-----DPTNPPPLLPSLGRYITEQSMTFC-QIVLSTEL--VDSV----RSDP---------RGL---- 338 (544)
T ss_pred HHhCCCCCCcCC-----CCcCCCCCCCCCCcchhcCCCccE-EEEecchh--hhhc----cCCc---------ccc----
Confidence 999998742210 11122 25 9999999987655 55554321 0000 0000 000
Q ss_pred ccccccccchhchhhhcccchhhhhhcccchhhHHHHH-HhCCCCCcCcccccEEEEEeccCCCCCCCCcEeEeecCCcc
Q psy8892 422 GYNLQDHVSMAGLVFLVNDSVTIVESQFQKPRYIVDYW-FRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGAL 500 (1183)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1183)
.| +.. . ...+. ....++. ...|.. .......|..+.. ++
T Consensus 339 ~~--------------~~~------------~-~~~~~~~~~~~~~-------~i~~~~--~~~~~~~~~~~~~--~w-- 378 (544)
T TIGR02462 339 DW--------------WKE------------K-VANHMMKHPEDPL-------PIPFRD--PEPQVTTPFTEEH--PW-- 378 (544)
T ss_pred cc--------------ccc------------c-chhhhccccCCcc-------cccccc--cCccccccccccc--cc--
Confidence 00 000 0 00000 0000000 000000 0000000000000 00
Q ss_pred CCCCCcccccccccchhhhhcccCCCCCCCeE-EEEeeecccCCceEEEeeC--CCCCCCCeeeCCCCCChhhHHHHHHH
Q psy8892 501 TGDSNGSLRSLLGISDKFYRKVYQPYFERQAY-NIVPLILRPFSRGFVKLRS--SNPFDSPKFYPNYLSDSRDLDVLIEA 577 (1183)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~srG~v~l~s--~d~~~~P~i~~~y~~~~~D~~~~~~~ 577 (1183)
........+.+. ...+........ .-+...+.|...++|+|+. +|.++.|.+.++|..++.|++.+.++
T Consensus 379 ---~~~~~~~~~~~g-----~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~ 450 (544)
T TIGR02462 379 ---HTQIHRDAFSYG-----AVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRM 450 (544)
T ss_pred ---chhhhhhhhhcc-----cccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHH
Confidence 000000000000 000000000111 1233455689999999965 59999999999999999999999999
Q ss_pred HHHHHHhhhccccccccccCCCCccchHHHHHHhccccc-cc----ccccCCcceeeecccccccccccccccccccccc
Q psy8892 578 IKMCALFSLVCHLLVLSVAHAQSQLFRTECALFSLVCHL-LL----LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTK 652 (1183)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~-~g----~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~ 652 (1183)
++.++++++........... ... ......|.++|+ || +||||+++||| |++||||+|+|+||+.+..||+
T Consensus 451 ~~~~~~i~~~~G~~~~~~~~---~~~-~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~-g~~NL~V~d~s~~Pt~~~~nPt 525 (544)
T TIGR02462 451 MTDMCNVAAKIGGYLPGSLP---QFM-EPGLALHLAGTTRIGFDEQTTVANTDSKVH-NFKNLYVGGNGNIPTAFGANPT 525 (544)
T ss_pred HHHHHHHHHHcCCCcccccc---ccc-CCCccccCCCCeecCCCCCCceECCCCcEe-CCCCeEEeccCcCCCCCCCCcH
Confidence 99999996443221111100 000 001123666777 88 89999999999 9999999999999999999999
Q ss_pred cccccceEEeeCCCchHHHHHHHHhc
Q psy8892 653 IFEKEYDFIVIGAGSGGSVIANRLTE 678 (1183)
Q Consensus 653 ~~~~~~D~VVIGsG~aG~~~A~~Lae 678 (1183)
+ .-...|.++|+
T Consensus 526 l--------------Ti~ala~r~a~ 537 (544)
T TIGR02462 526 L--------------TSMCYAIKSAE 537 (544)
T ss_pred H--------------HHHHHHHHHHH
Confidence 8 45566666665
No 14
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.96 E-value=2.6e-27 Score=279.99 Aligned_cols=438 Identities=12% Similarity=0.135 Sum_probs=238.6
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCcccccccccc-cCCC--------------------------
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYM-VDTD-------------------------- 710 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p~~~~~~-~~~~-------------------------- 710 (1183)
||+||||+|++|+++|+.|++ .|++|+|||++...+....-...+... ....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999999 699999999997653110000000000 0000
Q ss_pred ---CccCccccCccccccCCC------CCeee---ccccceecCcccccceeEeeCCccccchhhccCCCCC--CccchH
Q psy8892 711 ---FNWGYKTEKDERFCRGMS------DQTCN---WPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGW--SYRDVL 776 (1183)
Q Consensus 711 ---~~w~~~~~~~~~~~~~~~------~~~~~---~~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~gw--~~~~l~ 776 (1183)
-.|+-.. ... +-.. +...+ ..+-+.+||+|.+|++.+.|..+++. .| .+ .+| +|++|.
T Consensus 80 ~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~ 151 (544)
T TIGR02462 80 LDPTAWSASI--ESF--FVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWD 151 (544)
T ss_pred CCccccccCC--Ccc--eecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHH
Confidence 0121000 000 0000 01111 23568899999999999999999642 12 12 578 999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCccccccCCCCChHHHHHHHHHHHCCC-CCCCCCCCCceeeeecccccCCccchHHH
Q psy8892 777 PYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGY-DQVDHCENPIGFSYVLANKIRGARQSASK 855 (1183)
Q Consensus 777 py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~d~~~~~~g~~~~~~~~~~g~r~~~~~ 855 (1183)
|||.++|++.... |.. ...+.......+.+.+.+. |. ..... ...+.. ..|..+.++++..
T Consensus 152 PyY~~Ae~~~gv~----------g~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~---PlA~~~--~~c~~~ak~s~~~ 213 (544)
T TIGR02462 152 RLYTKAESLIGTS----------TDQ-FDESIRHNLVLRKLQDEYK--GQRDFQPL---PLACHR--RTDPTYVEWHSAD 213 (544)
T ss_pred HHHHHHHHHhCCC----------CCc-CCCcccchhHHHHHHHHhc--cccccccC---chhhhc--cCCCccceecCCc
Confidence 9999999987642 110 0001111122222332222 32 11111 011111 0344455665544
Q ss_pred hhhhhhh----cCCCcEEEcCcEEEEEEEcCCC-CeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHcCCCCc
Q psy8892 856 AFIRPIR----KRHNLKVAKEARVTKILIDPIT-KRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPR 928 (1183)
Q Consensus 856 ~~L~~~~----~~~g~~i~~~t~V~~I~~~~~~-gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~ 928 (1183)
+.+..+. ++.|++|++++.|++|++++++ ++|+||++.+ +++..+++| |.||||||+++||+||++|+++..
T Consensus 214 t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A-~~vVLAagaIetpRLLL~S~~~~~ 292 (544)
T TIGR02462 214 TVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKA-DVYVLACGAVHNPQILVNSGFGQL 292 (544)
T ss_pred cchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEEC-CEEEEccCchhhHHHHHhCCCCCC
Confidence 4444333 4788999999999999998654 5899999985 577889999 689999999999999999999753
Q ss_pred cchhhcCCCcccc---CC-CCcccccccccceEEEEEcCcccccccccCChHHHHHHHhcCC-CCCC-CccccceEEEee
Q psy8892 929 PHLEELNIPVIQD---LK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGA-GPLT-LPGGAEALAFYP 1002 (1183)
Q Consensus 929 ~~l~~~gi~v~~d---lp-VG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~-~~~~~~~~~~~~ 1002 (1183)
.... -..| .+ ||+||+||+.. .+...++...... +.......+|+.... .... ...+...+.|-.
T Consensus 293 ~~p~-----gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 363 (544)
T TIGR02462 293 GRPD-----PTNPPPLLPSLGRYITEQSMT-FCQIVLSTELVDS---VRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRD 363 (544)
T ss_pred cCCC-----CcCCCCCCCCCCcchhcCCCc-cEEEEecchhhhh---ccCCccccccccccchhhhccccCCcccccccc
Confidence 3211 1122 36 99999999886 5555554432100 000000011110000 0000 000000001100
Q ss_pred cCCCCCCCCCCeeEeecCCcccCCCCCcc-hhh--cccccccccccccCCCCCCeEEE-EEeeccccCCCcccCcceEEE
Q psy8892 1003 TKYAEDPNHPDMEIVFGPGALTGDSGGSL-RKV--LGISDKFYNKVYRPFAEREAYSI-VPVLVRPRSRGFVRLSRGFVK 1078 (1183)
Q Consensus 1003 ~~~~~~~~~pd~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~P~SrG~~~~~~~~V~ 1078 (1183)
. .|... .++....-+...+ +.. ++... ........+.+ ...-..|.-.+ +|+
T Consensus 364 ~-------~~~~~---~~~~~~~~w~~~~~~~~~~~g~~~-------~~~~~~~~v~l~~~~e~lP~~~N-------rV~ 419 (544)
T TIGR02462 364 P-------EPQVT---TPFTEEHPWHTQIHRDAFSYGAVG-------PSIDSRVIVDLRFFGRTEPKEEN-------KLV 419 (544)
T ss_pred c-------Ccccc---cccccccccchhhhhhhhhccccc-------ccccccceeeEEEEeccCCCCCC-------eEE
Confidence 0 00000 0000000000000 000 11100 00011112222 34456699999 999
Q ss_pred ecC--CCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhHhhhccCCccCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy8892 1079 LRS--SNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTN 1156 (1183)
Q Consensus 1079 l~s--~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~~~~~~~i~~~~~t 1156 (1183)
|.. +|.++.|....+|--++.|++.+..+++...++++. ++.. .+... .. +. .-.+
T Consensus 420 Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~-----~G~~-----~~~~~-------~~---~~--~~~~ 477 (544)
T TIGR02462 420 FQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAK-----IGGY-----LPGSL-------PQ---FM--EPGL 477 (544)
T ss_pred cCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHH-----cCCC-----ccccc-------cc---cc--CCCc
Confidence 976 599999987777777999999999999999888653 2221 11100 00 10 1124
Q ss_pred CcccccccccccCCCCcEEEcCC
Q psy8892 1157 LHHQICPHIADAVDRRGEIMLSS 1179 (1183)
Q Consensus 1157 ~~H~~gTc~Mg~~~~~~~Vvd~~ 1179 (1183)
.+|++|||+||. ++..+|||+.
T Consensus 478 ~~H~~Gt~rMG~-dp~~sVvd~~ 499 (544)
T TIGR02462 478 ALHLAGTTRIGF-DEQTTVANTD 499 (544)
T ss_pred cccCCCCeecCC-CCCCceECCC
Confidence 789999999995 4567888874
No 15
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.78 E-value=6.8e-19 Score=176.42 Aligned_cols=111 Identities=30% Similarity=0.331 Sum_probs=84.6
Q ss_pred cCCceEEEeeCCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHhhhcccccc--ccccCC----------CCccchHHHH
Q psy8892 541 PFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLV--LSVAHA----------QSQLFRTECA 608 (1183)
Q Consensus 541 p~srG~v~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------g~~~~~~~~~ 608 (1183)
|+|||+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++... +.. ..+..+ ......++++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999998766 110 001111 1222348888
Q ss_pred HHhccc-------cc-cc----ccccCCcceeeeccccccccccccccccccccccc
Q psy8892 609 LFSLVC-------HL-LL----LSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKI 653 (1183)
Q Consensus 609 ~~~~~~-------t~-~g----~~VVD~~~rV~~gv~nLrV~D~s~~p~~~~~np~~ 653 (1183)
+++... |+ || ++|||++|||| |++||||+|+||||+.+++||++
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~-g~~nL~V~DaSv~P~~~~~np~~ 135 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVH-GVRNLRVADASVFPTSPGANPTL 135 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTTTSB-TTSBBT-TSBSEEE-SGGGSSS-SSSSSHH
T ss_pred eeeccceecccccceeccccCCceeECCCCCee-eeeeEEECCCCcCCCCCCcCcHH
Confidence 887544 33 55 59999999999 99999999999999999999998
No 16
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.69 E-value=3e-17 Score=164.47 Aligned_cols=107 Identities=34% Similarity=0.449 Sum_probs=84.7
Q ss_pred ccCCCcccCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcChhhhHhhhccC-CccCCCCCCCCCCC
Q psy8892 1064 PRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLL-PVKFPGCEPYEFRS 1142 (1183)
Q Consensus 1064 P~SrG~~~~~~~~V~l~s~dp~~~P~I~~~yls~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~s 1142 (1183)
|+||| +|+|+|+||++.|.|++||++++.|++.|+++++.+++++++. |++++.... +...+.+......+
T Consensus 1 P~S~G-------~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (144)
T PF05199_consen 1 PKSRG-------RVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDS 72 (144)
T ss_dssp -SS-B-------EEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTC
T ss_pred CCCCc-------EEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccccccccccccccccc
Confidence 78888 9999999999999999999999999999999999999999998 777754332 22233344445689
Q ss_pred HHHHHHHHHhcCCCCcccccccccccCCCCcEEEcCC
Q psy8892 1143 DEYWACAARQLTTNLHHQICPHIADAVDRRGEIMLSS 1179 (1183)
Q Consensus 1143 ~~~~~~~i~~~~~t~~H~~gTc~Mg~~~~~~~Vvd~~ 1179 (1183)
+++|++|+++...+.+|++|||+||+++++ .|||+.
T Consensus 73 ~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~ 108 (144)
T PF05199_consen 73 DEDLECYIRQNVGTSWHPSGTCRMGPDPDT-SVVDPD 108 (144)
T ss_dssp HHHHHHHHHHHGEECSS-BETT-BTSSTTT-TSB-TT
T ss_pred chhhhhheeeccceecccccceeccccCCc-eeECCC
Confidence 999999999999999999999999988777 788864
No 17
>PRK07121 hypothetical protein; Validated
Probab=99.37 E-value=1.4e-11 Score=149.31 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=49.9
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
.|...+++.|++|+++++|++|+.++++ +|+||++..+++...|+|++.||||+|++...+-|+
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDDDG---RVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCCC---CEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 3444456679999999999999987543 899999877776778999556999999998544443
No 18
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.36 E-value=5.7e-12 Score=153.38 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=51.4
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
.|...+++.|++|+++++|++|+.++ ++|+||.+..+++++.|+|+|.||||||+|...+-|
T Consensus 222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 222 GLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHH
Confidence 34445667899999999999999764 799999887777788899988999999999865533
No 19
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.36 E-value=5.1e-12 Score=154.86 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=53.4
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|+++++|++|+.+++ ++|+||.+..+++.++|+|+|.||||||+|...+-|+
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHH
Confidence 355566788999999999999999754 7999999987788889999778999999998644333
No 20
>PRK07121 hypothetical protein; Validated
Probab=99.34 E-value=2.4e-11 Score=147.34 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=52.8
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLML 922 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~ 922 (1183)
.|...+++.|++|+++++|++|+.+++ ++++||++..+++.++|+|+|.||||+|++...+-|+.
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 455556778999999999999998753 68999999877777889997889999999986544443
No 21
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.31 E-value=3.2e-11 Score=147.90 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC-hHHHH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS-PQLLM 347 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s-p~LLl 347 (1183)
.|...+++.|++|++++.|++|+.++++ +|+||.+..+++...|+|++.||||+|+|.. +.++.
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~~g---~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDPDG---AVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECCCC---cEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 3445566789999999999999997543 8999998877777889998789999999985 55544
No 22
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.29 E-value=1.9e-11 Score=149.40 Aligned_cols=63 Identities=13% Similarity=0.280 Sum_probs=52.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|+++++|++|+.++ ++|+||++..+++.++|+|+|.||||||+|...+-|+
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 44455677899999999999999875 7999999987777889999778999999998654443
No 23
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.28 E-value=4.1e-11 Score=145.45 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=52.1
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcH-HHHH
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSP-QLLM 921 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp-~lL~ 921 (1183)
.++..+.++.|++|+++++|++|+.++ ++|+||.+..+++.++|+|+|.||||||+|+.. .++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 345445556799999999999999875 799999988777788999987999999999754 4443
No 24
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=5.6e-11 Score=144.76 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=47.2
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChH
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQ 344 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~ 344 (1183)
.+++.|++|+++++|++|+.+++ +|+||.+..+++...|.|+|.||||+|+|....
T Consensus 226 ~~~~~Gv~i~~~t~v~~Li~~~g----~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 226 GVLRAGIPIWTETSLVRLTDDGG----RVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHCCCEEEecCEeeEEEecCC----EEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 34567999999999999997655 999998877777778999888999999998544
No 25
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.27 E-value=7.6e-11 Score=143.17 Aligned_cols=63 Identities=24% Similarity=0.507 Sum_probs=51.0
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC-hHHHH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS-PQLLM 347 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s-p~LLl 347 (1183)
++..+.++.|++|+++++|++|+.+++ +|+||++..+++..+|+|+|.||||||+++. +.|+.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g----~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDG----RVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCC----EEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 444444567999999999999998865 9999998777777889998789999999974 44443
No 26
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.27 E-value=2.9e-11 Score=144.19 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=47.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|+++++|++|+.++ ++|+||++. .+++.++|+| +.||||||++.. .++.
T Consensus 146 ~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A-~aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 146 ALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKA-KAVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEE-SEEEE----BGG-HHHH
T ss_pred HHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEee-eEEEeccCcccc-cccc
Confidence 34455667789999999999999987 799999999 6788899999 599999999998 4443
No 27
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.26 E-value=5.1e-11 Score=143.94 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=53.6
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe-eCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS-KNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~-~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
.|...+++.|++|+++++|++|+.++ ++++||.+. .+++...++| |.||||+|++.+++.++..-.+
T Consensus 136 ~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 136 ALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcC
Confidence 34455667899999999999999875 789999885 4455667899 7899999999988777765444
No 28
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=1.4e-10 Score=140.70 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=45.9
Q ss_pred hcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC-CeEEEEEeCcEEEEcCCCCCCh-HHHH
Q psy8892 283 RPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN-KQRHTVRARKEVILSAGALNSP-QLLM 347 (1183)
Q Consensus 283 ~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~-g~~~~i~A~k~VILAAGai~sp-~LLl 347 (1183)
...+++.|++|++++.|++|+.+++ +|+||.+... ++..+|.|+ .||||+|++... .++.
T Consensus 197 ~~~~~~~gv~i~~~t~v~~l~~~~g----~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 197 LKNVQERKIPLFVNADVTKITEKDG----KVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHHHHcCCeEEeCCeeEEEEecCC----EEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHH
Confidence 3334567899999999999987665 8999988754 355678896 599999999854 4443
No 29
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.24 E-value=5e-11 Score=142.17 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=46.3
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEE--eCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF--KNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~--~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
+....++.+++|+.+++|++|+.+++ +|+||++. .+++..+|+|+ .||||+|++.. .++.
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e~g----~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITEDG----RVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETT----EEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHHHHhhcCeeeeccceeeeEEEeCC----ceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 33344566799999999999999987 99999999 67888899998 69999999987 4443
No 30
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.23 E-value=1.2e-10 Score=140.58 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=51.6
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEE-eCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF-KNKQRHTVRARKEVILSAGALNSPQLLMLSGIG 352 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~-~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig 352 (1183)
|...+++.|++|+++++|++|+.+++ +|+||.+. .+++...++++ .||||+|++.+.+.++..-.+
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g----~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDG----RFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC----eEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 33344567999999999999998765 89999885 44555678886 599999999988777765443
No 31
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.22 E-value=1.2e-10 Score=141.05 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=47.1
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCC-eEEEEEeccEEEEccCccCcHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNR-KSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~-~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
|...+++.|++|+++++|++|+.++ ++++||.+...+ +..+|+| +.||||+|+|..+.-+
T Consensus 196 L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 196 LLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHH
Confidence 3444567799999999999998765 789999987543 5567999 7899999999865433
No 32
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.20 E-value=1.2e-10 Score=142.27 Aligned_cols=61 Identities=16% Similarity=0.373 Sum_probs=50.4
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLL 346 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LL 346 (1183)
|...+++.|++|+++++|++|+.+++ +|+||++..+++...|+|++.||||+|++....=|
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g----~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em 274 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG----RVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEM 274 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC----EEEEEEEEECCeEEEEEecceEEEecCCccCCHHH
Confidence 33445667999999999999999876 99999998777778899977899999999864333
No 33
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=141.06 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=52.7
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLML 922 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~ 922 (1183)
|...+++.|++|+++++|++|+.++ ++|+||.+..+++.++|+|++.||||||+|.+.+-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 4445567899999999999999875 79999998777778899997789999999998665554
No 34
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.18 E-value=2.4e-10 Score=135.59 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=45.5
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
++..+.++.|++|++++.|++|+.++ ++++||.+..+++.++|+| |.||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 33334446799999999999999875 7899988766666668999 789999999864
No 35
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=2.7e-10 Score=140.88 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=45.4
Q ss_pred hhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 860 PIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 860 ~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
..+++.|++|++++.|++|+.++ ++|+||.+.+ ++..+.|.| |.||||||+++.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 34567899999999999999875 7999999874 455667888 789999999875
No 36
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.17 E-value=1.8e-10 Score=140.26 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=44.7
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCc
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.++.|++|++++.|++|+.++++++|+||.+..+++.+.|+| |.||||||+++.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 345699999999999999874337999998877777777888 789999999753
No 37
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.15 E-value=3.2e-10 Score=138.40 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=45.4
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe-----eCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS-----KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~-----~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|++|++++.|++|+.+++ ++|+||.+. ..++...++| |.||+|+|++..
T Consensus 149 ~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 149 ALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 444555677899999999999998753 699999886 2333567889 789999999863
No 38
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=3.6e-10 Score=138.81 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=46.9
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+.+.|+++++++.|++|+.+++ ++|+||.+. .+++.+.|+| |.||||||++..
T Consensus 148 ~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 148 TLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 344445578999999999999998643 799999885 3566778999 789999999974
No 39
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=5.8e-10 Score=136.79 Aligned_cols=36 Identities=39% Similarity=0.554 Sum_probs=33.8
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
..++|+||||+|.+|+++|..+++ .|++|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 468999999999999999999999 699999999996
No 40
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.14 E-value=4.3e-10 Score=133.46 Aligned_cols=57 Identities=18% Similarity=0.472 Sum_probs=44.8
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s 342 (1183)
++..+.++.|++|++++.|++|+.+++ +++||.+..+++..++.|+ .||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~~----~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIENDN----TCIGAICLKDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecCC----EEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence 333344467999999999999998766 8999887666655678996 59999999764
No 41
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.14 E-value=2.7e-10 Score=150.05 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=47.9
Q ss_pred cceeeecccccccccccccccc-ccc--ccccccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 625 QSQLFRTFINMVSKDAILTPSN-IVQ--DTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 625 ~~rV~~gv~nLrV~D~s~~p~~-~~~--np~~~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
++.|| +-.+=|++-+=..+.- +.. .....+.++|+||||+|.||++||..+++ .|.+|+||||++.
T Consensus 375 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~i~~t~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 375 DYTTY-TREGERVAHMFEIATEDAEMRKKRIAGSLPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAK 443 (1167)
T ss_pred eEEEE-eeccchhhhhhcccccCccccccccccCCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 47888 8778787754432221 111 11112457999999999999999999999 6999999999963
No 42
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.14 E-value=5.9e-10 Score=136.20 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=49.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
.+++.|++++++++|+.|..++ ++++||++.+ +++..+|+| +.||+|||++ +.+|+...|+
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHHhcCC
Confidence 4567899999999999998876 7899999864 344568999 6799999965 7888877765
No 43
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=6.6e-10 Score=136.70 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=51.3
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
|...+++.|++|++++.|++|+.++ ++|+||.+..+++.++|+|++.||||+|++...+-|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 4455667899999999999999875 7999999887777788998788999999998654443
No 44
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=4.5e-10 Score=137.64 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=45.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~ 915 (1183)
|...+.+.|+++++++.|++|+.++ ++|+||.+.+ +++.+.|+| |.||||||+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 3344445699999999999999975 8999998874 456678899 89999999997
No 45
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.13 E-value=7.5e-10 Score=136.54 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=46.7
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSP 917 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp 917 (1183)
|...+.+.|++|++++.+++|+.+++ ++|+||.+.+ +++...|+| |.||||+|+++..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence 33444567999999999999998743 7999998854 566778899 7899999999753
No 46
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.3e-09 Score=134.23 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=49.7
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCCh-HHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSP-QLLM 347 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp-~LLl 347 (1183)
|...+++.|++|++++.|++|+.+++ +|+||.+..+++..+|.|++.||||+|++... .++.
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g----~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG----RVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC----EEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 33445567999999999999998765 99999988777777888866799999999864 4443
No 47
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.12 E-value=4.7e-10 Score=137.03 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHHHHHhC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQLLMLSG 350 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~LLl~SG 350 (1183)
+.+.|++|+++++|++|..+++ +++||++.+ +++..+|+|+. ||+|||++ +..|+...|
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~d~~~g~~~~i~A~~-VVnAaG~w-a~~l~~~~g 219 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIREGD----TVCGVRVRDHLTGETQEIHAPV-VVNAAGIW-GQHIAEYAD 219 (546)
T ss_pred HHhCCCEEEeccEEEEEEEcCC----eEEEEEEEEcCCCcEEEEECCE-EEECCChh-HHHHHHhcC
Confidence 4567999999999999998876 899999865 34456799986 99999986 677765443
No 48
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=6.5e-10 Score=136.19 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=51.6
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLML 348 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~ 348 (1183)
|...+++.|++|++++.|++|+.+++ +|+||.+..+++..+|+|++.||||+|++.+.+-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~g----~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVEDG----RVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeCC----EEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 33445677999999999999998766 9999998777777789998679999999997655544
No 49
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.1e-09 Score=134.12 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=45.9
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
|...+++.|++|++++.|++|+.+++ ++|+||.+.. +++.+.|+| |.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 44445568999999999999998762 5699998764 566678999 789999999973
No 50
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1e-09 Score=135.21 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=47.0
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|+++++++.|++|+.+++ ++|+||.+. .+++.+.|.| |.||||||+++.
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 344445568999999999999998753 699999885 3566778999 789999999975
No 51
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.10 E-value=1e-09 Score=135.38 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=46.6
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|++|++++.|++|+.+++ ++|.||.+.. +++.+.|+| |.||||+|++..
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 344455678999999999999998433 7999998753 566778889 789999999974
No 52
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.09 E-value=9.7e-10 Score=131.85 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=48.3
Q ss_pred HhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCC-eEEEEEeccEEEEccCccCcHHHH
Q psy8892 855 KAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNR-KSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 855 ~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~-~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
...|...+++.|++|+++++|++|+.+++ ++++||++...+ +...+.+ |.||||+|++....-|
T Consensus 133 ~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 133 VQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHH
Confidence 33455556778999999999999998753 789999987543 3345666 8899999999864333
No 53
>PLN02815 L-aspartate oxidase
Probab=99.09 E-value=5.4e-10 Score=136.48 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=43.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCC--eEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITK--RTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~g--ra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
+.++.|++|++++.|++|+.+++++ +|+||.+.+ +++.+.|.| |.||||||+++.
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 3345699999999999999865433 499998853 566678889 899999999963
No 54
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.09 E-value=1.4e-09 Score=130.48 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=44.4
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC-CeEEEEEeCcEEEEcCCCCCCh
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN-KQRHTVRARKEVILSAGALNSP 343 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~-g~~~~i~A~k~VILAAGai~sp 343 (1183)
.|...+++.|++|+++++|++|+.++++ +++||++... +....+.++ .||||+|++...
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n 194 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQG---TVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCC---cEEEEEEEeCCCeEEEEecc-eEEEecCCCCCC
Confidence 3444455679999999999999986543 8999988764 334456675 599999999753
No 55
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=1.5e-09 Score=133.64 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=40.9
Q ss_pred CcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 866 NLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 866 g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
++++++++.+++|+.+++ ++|+||.+.+ +++...|.| |.||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 489999999999998643 7999999874 455567888 789999999975
No 56
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.08 E-value=2.2e-09 Score=131.11 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCCCCCcccCCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 34 PSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 34 ~~~~~~~~~~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|..........+.++||||||||.+|+++|.++++. |.+|+||||+.
T Consensus 3 ~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~ 49 (541)
T PRK07804 3 PRRLAAPAPGWRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAA 49 (541)
T ss_pred CcccCCCCcccccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccC
Confidence 444444444566789999999999999999999998 99999999996
No 57
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=133.09 Aligned_cols=37 Identities=41% Similarity=0.552 Sum_probs=34.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|+.++||||||+|.+|+++|..++++ |++|+||||++
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 45689999999999999999999998 99999999996
No 58
>PRK12839 hypothetical protein; Provisional
Probab=99.07 E-value=3e-09 Score=130.18 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=45.3
Q ss_pred cccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChH
Q psy8892 284 PIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQ 344 (1183)
Q Consensus 284 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~ 344 (1183)
..+++.|++|+.++.|++|+.++++ +|+||.+...+...++.+++.||||+|+|....
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~~g---~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDKNG---RVTGVRVQGPDGAVTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECCCC---cEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCH
Confidence 3345679999999999999986433 999999876544556777667999999998643
No 59
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=3.8e-09 Score=130.15 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=48.5
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLL 346 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LL 346 (1183)
|...+++.|++|+++++|++|+.+++ +|+||.+..+++...|+|++.||||+|++....-+
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g----~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG----RVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC----EEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 33345567999999999999998865 99999987766666789955699999999765444
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.06 E-value=5.6e-10 Score=123.29 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=67.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe
Q psy8892 814 SAAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS 893 (1183)
Q Consensus 814 ~~~~~~~~~~~G~~~~d~~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~ 893 (1183)
.+.+++.++.+|++...- ..|-.++. ........++++ ...++.|++|+++++|.+|..++. +-.+.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~---~~Gr~Fp~----sdkA~~Iv~~ll-~~~~~~gV~i~~~~~v~~v~~~~~-----~f~l~ 147 (408)
T COG2081 81 PEDFIDWVEGLGIALKEE---DLGRMFPD----SDKASPIVDALL-KELEALGVTIRTRSRVSSVEKDDS-----GFRLD 147 (408)
T ss_pred HHHHHHHHHhcCCeeEEc---cCceecCC----ccchHHHHHHHH-HHHHHcCcEEEecceEEeEEecCc-----eEEEE
Confidence 456778888899876422 22222221 112223344444 446688999999999999988751 23333
Q ss_pred eCCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC
Q psy8892 894 KNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK 943 (1183)
Q Consensus 894 ~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp 943 (1183)
..+++ +|+| +.+|||+|+..-|++= -.|.| -..++++|++|..--|
T Consensus 148 t~~g~-~i~~-d~lilAtGG~S~P~lG-stg~g-y~iA~~~G~~I~~~rp 193 (408)
T COG2081 148 TSSGE-TVKC-DSLILATGGKSWPKLG-STGFG-YPIARQFGHTITPLRP 193 (408)
T ss_pred cCCCC-EEEc-cEEEEecCCcCCCCCC-CCchh-hHHHHHcCCccccCcc
Confidence 22222 7899 6699999998888631 12332 1345666666654433
No 61
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.06 E-value=1.5e-09 Score=133.83 Aligned_cols=62 Identities=11% Similarity=0.208 Sum_probs=50.1
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
|...+++.|++|++++.|++|+.++ ++|+||++...++...++|+|.||||+|++....-++
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 3344567899999999999999876 7999999876555667889778999999997555544
No 62
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=1.5e-09 Score=133.79 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=45.4
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|++|++++.|++|+.++ ++|.||.... +++...|+| |.||||+|++..
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 34444567899999999999999875 7999998642 555567899 789999999863
No 63
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.05 E-value=2.4e-09 Score=131.91 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=47.4
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
..++.|++|++++.|++|+.+++ +|+||.+.+.++...+++++.||||+|++....-++
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~~g----~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTEGG----RVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEeeCC----EEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 34567999999999999999876 999999877555567888767999999997544443
No 64
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.05 E-value=2.2e-09 Score=132.31 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|+++++|++|+.++ ++++||.+..+++.++|+|+|.||||+|++....-++
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 34455677899999999999999875 7999999887666778999788999999998655543
No 65
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=2.6e-09 Score=130.94 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=42.8
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
+.+.|++|+.++.|++|+.+++ +|+||.+.+ +++...++|+ .||||+|++.
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTDNK----KVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEECC----EEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 3456999999999999999866 999998875 4556678886 6999999996
No 66
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=3.5e-10 Score=132.08 Aligned_cols=60 Identities=38% Similarity=0.558 Sum_probs=43.4
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGI 351 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGi 351 (1183)
|...+++.|++|+++++|++|..+++ +++||++.++ .++|+. ||+|+|+ ++++|+..+|+
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~----~v~gv~~~~g----~i~ad~-vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG----RVTGVRTSDG----EIRADR-VVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT----EEEEEEETTE----EEEECE-EEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc----cccccccccc----ccccce-eEecccc-cceeeeecccc
Confidence 33344556999999999999999988 8888876332 489986 9999997 47787776554
No 67
>PLN02815 L-aspartate oxidase
Probab=99.04 E-value=2.7e-09 Score=130.48 Aligned_cols=58 Identities=10% Similarity=0.259 Sum_probs=43.4
Q ss_pred hcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 283 RPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 283 ~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
..+.+.+|++|+.++.+++|+.+++++..+|+||.+.+ ++....|.|+ .||||+|++.
T Consensus 163 ~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 222 (594)
T PLN02815 163 EAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAG 222 (594)
T ss_pred HHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCcce
Confidence 33334569999999999999986543211489998864 5666778886 6999999996
No 68
>PRK12839 hypothetical protein; Provisional
Probab=99.04 E-value=1.8e-09 Score=132.00 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=49.5
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
|...+++.|++|++++.|++|+.+++ ++|+||.+...++..++.++|.||||||+|....-|
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHH
Confidence 44455678999999999999998643 799999987655566777878999999999875443
No 69
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.04 E-value=2e-09 Score=131.07 Aligned_cols=54 Identities=24% Similarity=0.416 Sum_probs=43.3
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s 342 (1183)
.++.|++|++++.|++|+.+++++ +|+||.+..++....+.|+ .||||+|++..
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g--~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETG--RCQGISLLYQGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCC--EEEEEEEEECCeEEEEEcC-EEEEcCCCCcc
Confidence 345699999999999999874211 8999988777766678886 59999999753
No 70
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=2.9e-09 Score=131.16 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=45.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
|...+.+.|++++.++.|++|+.+++ ++|.||.+.+ +++...++| |.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 33445568999999999999998743 7999998853 455567888 789999999974
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.03 E-value=1.6e-09 Score=128.72 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCcccCCCCCccEEEECCChhHHHHHHHHhcCCC-CEEEEEcCcC
Q psy8892 19 FRRIVDRIIKDNLLTPSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSN-WTVLLLEAGP 81 (1183)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIVVGsG~aG~~~A~~LA~~~G-~~VlVLE~G~ 81 (1183)
|.-++.+++......|....+. ...+|||||||+|+.|+++|++|++..| .+|+||||+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 5 FSLLKEGLRGHRGWKPAWRSPE---PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred HHHHHHHhccCCCCCcccCCCC---CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4456677788887776665432 2357999999999999999999998327 5999999975
No 72
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.02 E-value=4.1e-09 Score=130.08 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=43.1
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
+.+.|++|+.++.+++|+.++++ +|+||.+.+ +++...|.|+ .||||+|++..
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDSDG---ACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 34569999999999999987433 999998864 5667788887 59999999874
No 73
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.02 E-value=2.3e-09 Score=132.96 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=46.7
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
|...+.+.|++|+.++.|++|+.++ ++|.||.+.+ +++.+.|.| |.||||||++..
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4445567899999999999999875 7999998874 566778889 789999999874
No 74
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=5.4e-09 Score=128.10 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=44.8
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|...+.+.|++|++++.|++|+.++++ +|+||.+.+ ++....|+|+ .||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~---~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR---EVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc---EEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 333445579999999999999987652 699998765 5656678996 59999999864
No 75
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.01 E-value=2e-09 Score=125.66 Aligned_cols=63 Identities=32% Similarity=0.448 Sum_probs=47.2
Q ss_pred HhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 855 KAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 855 ~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
...|...+++.|++|+++++|++|..++ ++++||++.++ +++| +.||+|+|+ ++++|+..+|+
T Consensus 150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g----~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 150 IQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDG----EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTE----EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred hhhhHHHHHHhhhhccccccccchhhcc--ccccccccccc----cccc-ceeEecccc-cceeeeecccc
Confidence 3345455667799999999999999988 78888887543 4889 679999996 58888888765
No 76
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.9e-09 Score=129.74 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=43.6
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
...+.|++|++++.|++|+.++++ +|+||.+.+ +++...|.|+ .||||+|++..
T Consensus 152 ~~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 152 QNLKNHTTIFSEWYALDLVKNQDG---AVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HhhhcCCEEEeCcEEEEEEECCCC---EEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 344679999999999999986433 999998853 6666788896 69999999864
No 77
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=5.3e-09 Score=129.59 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.+++.|++|++++.|++|+.+++ +|+||.+.+ ++....|.|+ .||||+|++..
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g----~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG----RARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC----EEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 34567999999999999998866 999999875 4656678887 59999999875
No 78
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=2.9e-09 Score=131.92 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=39.9
Q ss_pred cEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 867 LKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 867 ~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
++|++++.|++|+.++ +++.||.... +++...|+| |.||||+|+++.
T Consensus 166 v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence 9999999999999875 7999998753 566678899 789999999764
No 79
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.00 E-value=3.7e-09 Score=130.44 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=42.9
Q ss_pred hhhhhcC-CCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccC
Q psy8892 858 IRPIRKR-HNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 858 L~~~~~~-~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~ 915 (1183)
|...+++ .|+++++++.|++|+.++ ++++||.+. .+++...++| |.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 3344444 469999999999999876 799999764 3455568889 78999999986
No 80
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.00 E-value=5.5e-09 Score=129.01 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=44.3
Q ss_pred hhcccCCCCeEEEcCceEEEEEe-eCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLI-DENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~-~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|...+.+.|++|+.++.|++|+. +++ +|+||.+.+ +++...|.|+ .||||+|++..
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 33334567999999999999998 444 999998754 5666788887 59999999864
No 81
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.99 E-value=3.4e-09 Score=130.92 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=45.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|+++++++.|++|+.++ ++|+||.+.. +++...|+| |.||||+|++..
T Consensus 134 ~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 134 TLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 34444556699999999999999875 7999998753 455667899 789999999863
No 82
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=2.4e-09 Score=132.08 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=45.0
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|...+.+.|++|++++.|++|+.++++ +|+||.+.+ ++....|.|+ .||||+|++..
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG---VCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 333344679999999999999987633 899998753 6666788896 59999999874
No 83
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.99 E-value=3.3e-09 Score=129.52 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=44.3
Q ss_pred hhcCCCcEEEcCcEEEEEEEcC----CCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 861 IRKRHNLKVAKEARVTKILIDP----ITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~----~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
+.+++|++|++++.|++|+.++ ++++|+||.+.+ +++...|+| |.||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4445799999999999999864 137999999864 466678889 789999999873
No 84
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.98 E-value=6.1e-09 Score=119.46 Aligned_cols=203 Identities=22% Similarity=0.250 Sum_probs=116.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcC-CCCeEEEEcCCCCCCCCcccccccccccCCCCccCccccCccccccCCCCCeeec
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNW 734 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~-~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1183)
.+||+||||+|+.|+++|+.|++. +.++|+||||-.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~--------------------------------------- 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ--------------------------------------- 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence 479999999999999999999993 2399999999864321
Q ss_pred cccceecCcccccceeEeeC---Cccccch-hhccCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCC
Q psy8892 735 PRGKAMGGTSVINYMVYSRG---VPQDFDN-WEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWR 810 (1183)
Q Consensus 735 ~~G~~lGGsS~~n~~~~~r~---~~~d~~~-w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~ 810 (1183)
++|..|.++..-+ .+.++.. ....|+. .+|.-..++. .++. ..|.+.+.....+
T Consensus 43 -------~sS~~NSgviHag~~y~p~slka~l~~~g~~--------~~~~~~kq~~------~~f~-~~g~l~vA~~e~e 100 (429)
T COG0579 43 -------ESSSNNSGVIHAGLYYTPGSLKAKLCVAGNI--------NEFAICKQLG------IPFI-NCGKLSVATGEEE 100 (429)
T ss_pred -------ccccCcccceeccccCCCcchhhHHHHHHHH--------HHHHHHHHhC------Cccc-ccCeEEEEEChHH
Confidence 0111111111111 0111111 0001111 1122222221 1122 2366777777777
Q ss_pred ChHHHHHHHHHHHCCCCC-C--C------C----CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEE
Q psy8892 811 TPLSAAFLEAGSELGYDQ-V--D------H----CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTK 877 (1183)
Q Consensus 811 ~~~~~~~~~~~~~~G~~~-~--d------~----~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~ 877 (1183)
.+..++..+.+.+.|+.. . | + .....+..+.+.+.... .......|...++..|++|.+|++|++
T Consensus 101 ~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~ 178 (429)
T COG0579 101 VERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVD--PGELTRALAEEAQANGVELRLNTEVTG 178 (429)
T ss_pred HHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeE
Confidence 777888888888888872 1 1 1 11123333332221111 112222344455667999999999999
Q ss_pred EEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCCC
Q psy8892 878 ILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGP 927 (1183)
Q Consensus 878 I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~ 927 (1183)
|..+++ | ++-+... ++++. ++| |-||.|||. .+.+|++++|+.+
T Consensus 179 i~~~~d-g-~~~~~~~-~g~~~-~~a-k~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 179 IEKQSD-G-VFVLNTS-NGEET-LEA-KFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred EEEeCC-c-eEEEEec-CCcEE-EEe-eEEEECCch-hHHHHHHHhCCCc
Confidence 998874 3 3333332 34333 899 778888884 5899999999965
No 85
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.98 E-value=8.7e-09 Score=136.01 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=43.7
Q ss_pred CCCeEEEcCceEEEEEeeCC----C-CcceEEEEEEEe----CCeEEEEEeCcEEEEcCCCCCChH
Q psy8892 288 RPNLKVAKRARVTKVLIDEN----D-NLKRATGVEFFK----NKQRHTVRARKEVILSAGALNSPQ 344 (1183)
Q Consensus 288 ~~g~~i~~~~~V~~I~~~~~----~-~~~rv~GV~~~~----~g~~~~i~A~k~VILAAGai~sp~ 344 (1183)
+.|++|+++++|++|+.+++ + ...+|+||.+.+ +++...|.|+ .||||+|+|....
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 36899999999999998742 1 012799999885 4666788895 6999999998643
No 86
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.98 E-value=6.4e-09 Score=125.84 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred hhhhhhcC-CCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKR-HNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~-~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++ +|++|++++.|++|+.++ ++++||.+...++...++| +.||||+|++..
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 34444444 799999999999999875 7899998876555567888 789999999874
No 87
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.98 E-value=2.7e-09 Score=131.13 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=43.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCc
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
+.+.+|+++++++.|++|+.++ ++|.||.+. .+++...|+| |.||||+|++..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 3344689999999999999875 799999875 3566678899 789999999873
No 88
>PRK08275 putative oxidoreductase; Provisional
Probab=98.98 E-value=4.4e-09 Score=129.13 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccC
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~ 915 (1183)
..|...+++.|++|++++.|++|+.+++ +++.||.+.+ +++...++| |.||||+|++.
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 3455555678999999999999998733 7899998753 455667888 78999999985
No 89
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=6.6e-09 Score=128.10 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=46.9
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCC--CCeEEEEEEe--eCCeEEEEEeccEEEEccCccCc
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPI--TKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~--~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
..|...+++.|+++++++.|++|+.+++ .++|+||.+. .+++.+.|+| |.||||||++..
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 3455555678999999999999998652 1689999875 3556668899 789999999873
No 90
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.97 E-value=3.4e-09 Score=129.90 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=43.6
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.+.+|++++.++.|++|+.++ ++|.||.+.+ +++...|+| |.||||+|++..
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 344799999999999999875 7999998753 566678999 799999999874
No 91
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=6.8e-09 Score=127.87 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=44.1
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|...+++.|++|++++.|++|+.+++ +|.||...+ +++...++|+ .||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN----QAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC----EEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 33334567999999999999998866 999998643 5555678896 59999999864
No 92
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.97 E-value=4.2e-09 Score=125.63 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=41.8
Q ss_pred eEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCC
Q psy8892 291 LKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGP 353 (1183)
Q Consensus 291 ~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~ 353 (1183)
++|+++++|+.|..+++ ....|.+ .++ +++|+. ||+|||++ |.+|+..+|++.
T Consensus 232 v~i~~~t~V~~I~~~~~----~~~~V~T-~~G---~i~A~~-VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 232 ISINLNTEVLNIERSND----SLYKIHT-NRG---EIRARF-VVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred EEEEeCCEEEEEEecCC----CeEEEEE-CCC---EEEeCE-EEECcChh-HHHHHHHhCCCC
Confidence 89999999999988755 4445543 233 589986 99999986 889999999864
No 93
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.96 E-value=3.7e-09 Score=125.78 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||||||||++|+++|++|+++ |.+|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 5999999999999999999998 99999999986
No 94
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.96 E-value=1e-08 Score=117.75 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=72.3
Q ss_pred cceeecCCCCCchHHHHHHHHHHHcCCC-CCCCCC-------C----CCcceeeeecc-cCCCcccchhhhhhhcccCCC
Q psy8892 223 GYLKIERPLWRTPLAKCVLDAGHEMGYD-IVDPSE-------P----NAIGFSYVLAN-TGNGERYSASRAFLRPIRKRP 289 (1183)
Q Consensus 223 g~l~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~-------~----~~~g~~~~~~~-~~~g~r~s~~~~~l~~~~~~~ 289 (1183)
|.+.+..........+.+.+.+++.|+. ....+. + ...+..+.+.+ +.+. .....+++. .+...
T Consensus 90 g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~--~~~t~~l~e-~a~~~ 166 (429)
T COG0579 90 GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDP--GELTRALAE-EAQAN 166 (429)
T ss_pred CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcH--HHHHHHHHH-HHHHc
Confidence 6666777766667777777888887776 111110 0 11111111111 1111 111222333 33455
Q ss_pred CeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCCh
Q psy8892 290 NLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGPR 354 (1183)
Q Consensus 290 g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~ 354 (1183)
|++|..|++|++|..+++ .++-+... +++.. ++|+. ||.|||. .+-+|+.++|+.+.
T Consensus 167 g~~i~ln~eV~~i~~~~d----g~~~~~~~-~g~~~-~~ak~-Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 167 GVELRLNTEVTGIEKQSD----GVFVLNTS-NGEET-LEAKF-VINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred CCEEEecCeeeEEEEeCC----ceEEEEec-CCcEE-EEeeE-EEECCch-hHHHHHHHhCCCcc
Confidence 999999999999999887 33333333 33333 89975 9999996 48899999999874
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.96 E-value=7.3e-10 Score=128.75 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee
Q psy8892 815 AAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK 894 (1183)
Q Consensus 815 ~~~~~~~~~~G~~~~d~~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~ 894 (1183)
+.+++.++++|++.... ..|..+.. ..+.......|...+++.|++|+++++|++|..++ +.+..|++.
T Consensus 80 ~d~~~ff~~~Gv~~~~~---~~gr~fP~-----s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~- 148 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIE---EDGRVFPK-----SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTK- 148 (409)
T ss_dssp HHHHHHHHHTT--EEE----STTEEEET-----T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEET-
T ss_pred HHHHHHHHhcCCeEEEc---CCCEECCC-----CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeecc-
Confidence 45667778888865311 11111111 11233333445455677899999999999999887 567778773
Q ss_pred CCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC
Q psy8892 895 NRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK 943 (1183)
Q Consensus 895 ~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp 943 (1183)
++ .++.| +.||||+|+...|++ =-+|-| -..++++|++++.-.|
T Consensus 149 ~~--~~~~a-~~vILAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~~~P 192 (409)
T PF03486_consen 149 NG--GEYEA-DAVILATGGKSYPKT-GSDGSG-YRIAKKLGHTITPPYP 192 (409)
T ss_dssp TT--EEEEE-SEEEE----SSSGGG-T-SSHH-HHHHHHTT--EEEEEE
T ss_pred Cc--ccccC-CEEEEecCCCCcccc-CCCcHH-HHHHHHCCCcEecCCC
Confidence 22 27888 679999999988873 111221 2456677777665544
No 96
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.95 E-value=1.3e-08 Score=123.20 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=42.0
Q ss_pred CCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC
Q psy8892 288 RPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 288 ~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s 342 (1183)
.+|++|+.++.|++|+.+++ +++||.+.+.++...++|+ .||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~~g----~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIETG----RVVGVWVWNRETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeeccCC----EEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence 47999999999999998766 8999988765555678887 59999999864
No 97
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.94 E-value=9.8e-09 Score=125.48 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=44.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCC-CeEEEEEEe--eCCeEEEEEeccEEEEccCccC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPIT-KRTYGVEFS--KNRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~-gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~ 915 (1183)
+....++.+++|++++.|++|+.++++ ++|+||.+. .+++.+.|+| |.||||||++.
T Consensus 132 l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 132 VAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred HHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 333344556899999999999986532 699999875 3566778999 78999999986
No 98
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.93 E-value=8e-09 Score=127.26 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=42.7
Q ss_pred CCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 864 RHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 864 ~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
+.|++|++++.|++|+.+++ ++|+||.+.+ +++...|+| |.||||||+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 46899999999999998753 6999999875 455678889 789999999863
No 99
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=9.2e-09 Score=126.92 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=42.3
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccC
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~ 915 (1183)
.+..|+++++++.|++|+.++ ++++||.+.+ +++...|+| |.||||+|++.
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG 200 (577)
T ss_pred HhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence 344799999999999999876 7999998753 455567899 78999999985
No 100
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.92 E-value=2.8e-09 Score=117.86 Aligned_cols=36 Identities=33% Similarity=0.695 Sum_probs=34.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
+.+||||||+|++|+++|..+++. |++|+|||+++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k 37 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPK 37 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCcc
Confidence 468999999999999999999998 999999999984
No 101
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.92 E-value=7.3e-09 Score=125.67 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=42.6
Q ss_pred cCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccC
Q psy8892 863 KRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 863 ~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~ 915 (1183)
++.|++++.++.|++|+.++ ++++||.+...++.++++| |.||||+|++.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPA-RAVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence 34699999999999998775 7999999876666667899 78999999986
No 102
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=1.4e-08 Score=125.00 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=42.4
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
..+.|++++.++.|++|+.++++ +|+||.+.+ +++...+.|+ .||||+|++..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDADG---DVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 34579999999999999987433 899998854 5655678886 59999999864
No 103
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.92 E-value=8.2e-09 Score=125.13 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=41.7
Q ss_pred CCcEEEcCcEEEEEEEcCCCCeEEEEEEee-CCeEEEEEeccEEEEccCccCc
Q psy8892 865 HNLKVAKEARVTKILIDPITKRTYGVEFSK-NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 865 ~g~~i~~~t~V~~I~~~~~~gra~GV~~~~-~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|++|++++.|++|+.++ +++.||.+.+ +++.+.++| |.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 699999999999998875 7999998875 455567888 789999999874
No 104
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.91 E-value=1e-08 Score=127.28 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=44.7
Q ss_pred cccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 284 PIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 284 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
..+.+.|++|+.++.|++|+.+++ +|+||.+.+ +++...+.|+ .||||+|++..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g----~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGK----RCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECC----EEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 334567999999999999998876 999999875 6666778896 59999999863
No 105
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.91 E-value=1.9e-08 Score=123.74 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=42.9
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
+.+.+|++++.++.|++|+.+++ +|+||.+.+ +++...++|+ .||||+|++..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVDDG----HVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEeCC----EEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 33446899999999999998876 999998753 5656778896 59999999863
No 106
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.90 E-value=2.2e-08 Score=123.82 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=42.8
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.+.+.|++|+.++.|++|+.+++ +|+||.+.+ +++...++|+ .||||+|++..
T Consensus 138 ~~~~~gv~i~~~~~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 138 QCLKLGVSFFNEYFALDLIHDDG----RVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHHcCCEEEeccEEEEEEEeCC----EEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 33455999999999999998866 999998764 5555678896 59999999863
No 107
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=2.8e-08 Score=122.46 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=39.8
Q ss_pred CeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 290 NLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 290 g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
+++++.++.+++|+.++++ +|+||.+.+ +++...+.|+ .||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG---VCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC---EEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 4899999999999986433 999999875 4555678886 59999999874
No 108
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=2.4e-08 Score=123.86 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=39.7
Q ss_pred eEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 291 LKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 291 ~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
++|+.++.|++|+.+++ +++||...+ +++...|.|+. ||||+|++..
T Consensus 166 v~i~~~~~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i~Ak~-VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDGG----RIAGAFGYWRESGRFVLFEAPA-VVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEECC----EEEEEEEEECCCCeEEEEEcCe-EEECCCcccC
Confidence 99999999999998766 999998754 56666789975 9999999864
No 109
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.89 E-value=2.1e-09 Score=124.98 Aligned_cols=56 Identities=27% Similarity=0.280 Sum_probs=35.9
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQ 344 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~ 344 (1183)
.|...+++.|++|+++++|++|..+++ .+..|.+. ++ ..+.+++ ||||+|+...|+
T Consensus 114 ~L~~~l~~~gv~i~~~~~V~~i~~~~~----~~f~v~~~-~~--~~~~a~~-vILAtGG~S~p~ 169 (409)
T PF03486_consen 114 ALLEELKRLGVEIHFNTRVKSIEKKED----GVFGVKTK-NG--GEYEADA-VILATGGKSYPK 169 (409)
T ss_dssp HHHHHHHHHT-EEE-S--EEEEEEETT----EEEEEEET-TT--EEEEESE-EEE----SSSGG
T ss_pred HHHHHHHHcCCEEEeCCEeeeeeecCC----ceeEeecc-Cc--ccccCCE-EEEecCCCCccc
Confidence 344445567999999999999999887 77777762 33 3789986 999999988776
No 110
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.89 E-value=2.5e-08 Score=122.41 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.+.+|++++.++.|++|+.+++ +|+||.+.+ +++...+.|+ .||||+|++..
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVDDG----RVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEeeCC----EEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 3446899999999999999866 999998754 5666778896 59999999863
No 111
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.88 E-value=2.7e-08 Score=122.89 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=40.3
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
+..|++|+.++.|++|+.+++ +|+||.+.+ +++...+.|+ .||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVDDN----RIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEeCC----EEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 344699999999999998776 999997643 4555678886 5999999985
No 112
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=2.6e-08 Score=123.01 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=42.0
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
.+..|++++.++.|++|+.+++ +++||.+.+ ++....+.|+. ||||+|++.
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak~-VIlATGG~~ 200 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVENG----VFKGVTAIDLKRGEFKVFQAKA-GIIATGGAG 200 (577)
T ss_pred HhcCCCEEEECCEEEEEEEECC----EEEEEEEEEcCCCeEEEEECCc-EEEcCchhc
Confidence 3447899999999999998876 999998754 55556788975 999999985
No 113
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.87 E-value=2.4e-08 Score=121.20 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=42.4
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCC
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~s 342 (1183)
++.|++|+.++.|++|+.+++ +|+||.+.++++..++.|+. ||||+|++..
T Consensus 148 ~~~gV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~~~~i~Ak~-VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVDDG----AVAGVLAATAGGPVVLPARA-VVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeecCC----EEEEEEEEeCCeEEEEECCE-EEEcCCCCcC
Confidence 346899999999999988765 99999887766556788975 9999999863
No 114
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.87 E-value=2.4e-08 Score=121.06 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=41.1
Q ss_pred CCeEEEcCceEEEEEeeCCCCcceEEEEEEEe-CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 289 PNLKVAKRARVTKVLIDENDNLKRATGVEFFK-NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 289 ~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~-~g~~~~i~A~k~VILAAGai~s 342 (1183)
.|++|+.++.|++|+.+++ ++.||.+.+ +++...++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG----RCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC----EEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 5899999999999998766 999998876 4555678887 59999999864
No 115
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.87 E-value=3.7e-08 Score=120.31 Aligned_cols=55 Identities=24% Similarity=0.485 Sum_probs=43.0
Q ss_pred ccCCCCeEEEcCceEEEEEeeCC----CCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDEN----DNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~----~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
+.+++|++|+.++.|++|+.+++ ++ +|+||.+.+ +++...|.|+ .||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g--~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGR--RVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCC--EEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 34467999999999999998641 11 899999864 4666678886 59999999863
No 116
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=3.5e-08 Score=121.72 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=44.8
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCC---CCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDEN---DNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~---~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.|...+++.|++|+.++.|++|+.+++ + +|+||.+.+ +++...|+|+ .||||+|++..
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGP---VAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCC---cEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 344445567999999999999998762 2 899998753 5656678896 59999999863
No 117
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.86 E-value=3.2e-08 Score=117.83 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=31.8
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+|+||||+|++|+++|++|++ .|++|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 599999999999999999999 5999999999963
No 118
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.86 E-value=5.5e-08 Score=113.84 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=62.4
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHcCCCCc---cchhhcCC
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPR---PHLEELNI 936 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~---~~l~~~gi 936 (1183)
+...|.++++.++|++++.++ + +.||++.+ ++++++|+| +.||.|||.| +-+++...+-.+. ..-...|+
T Consensus 174 A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW-~d~i~~~~~~~~~~~~~vr~skGs 248 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRA-RAVVNAAGPW-VDEILEMAGLEQSPHIGVRPSKGS 248 (532)
T ss_pred HHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEc-CEEEECCCcc-HHHHHHhhcccCCCCccceeccce
Confidence 457899999999999999987 6 99999984 578999999 7788888865 7889988876653 34557788
Q ss_pred CccccC
Q psy8892 937 PVIQDL 942 (1183)
Q Consensus 937 ~v~~dl 942 (1183)
.++++-
T Consensus 249 HlVv~~ 254 (532)
T COG0578 249 HLVVDK 254 (532)
T ss_pred EEEecc
Confidence 888775
No 119
>PRK08275 putative oxidoreductase; Provisional
Probab=98.86 E-value=2.7e-08 Score=122.21 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=43.8
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
.|...+++.|++|+.++.|++|+.++++ +++||.+.+ ++....+.|+ .||||+|++.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDADG---RVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcCCC---eEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 3444445679999999999999987332 899998754 5555678886 5999999975
No 120
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.85 E-value=3.1e-08 Score=128.06 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=41.6
Q ss_pred CCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccC
Q psy8892 864 RHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 864 ~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~ 915 (1183)
+.++++.+++.+.+|+.++ ++|+||.+.+ +++.+.|+| |.||||||+++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGA-KAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence 3589999999999999875 7999998753 567788999 89999999986
No 121
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.85 E-value=3.5e-08 Score=116.61 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=42.9
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIG 352 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig 352 (1183)
|...+++.|++++.+++|++|..+++ .+ .|+. .++ ++.++. ||+|+|++ ++.++...|+.
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~~~----~~-~V~~-~~g---~i~ad~-vV~A~G~~-s~~l~~~~g~~ 214 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEHAN----GV-VVRT-TQG---EYEART-LINCAGLM-SDRLAKMAGLE 214 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEecCC----eE-EEEE-CCC---EEEeCE-EEECCCcc-hHHHHHHhCCC
Confidence 33344567999999999999987655 43 3443 233 588986 99999975 77887776764
No 122
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.85 E-value=1.1e-08 Score=123.23 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcC-CCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTEN-SNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~-~G~~VlVLE~G~ 81 (1183)
+.++||||||+|++|+++|++|+++ +|.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 3468999999999999999999985 589999999985
No 123
>PLN02661 Putative thiazole synthesis
Probab=98.84 E-value=2e-08 Score=112.12 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||+|||+|++|+++|+.|++++|++|+|||++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 68999999999999999999986689999999975
No 124
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.83 E-value=2.6e-08 Score=109.12 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=42.7
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--------CCeEEEEEeccEEEEccCccC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--------NRKSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--------~~~~~~i~A~k~VILAaGa~~ 915 (1183)
|...+.+.|+++++++.|++|+.+++ +++.||.+.. .....+|+| |.||+|+|...
T Consensus 110 L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~~a 173 (257)
T PRK04176 110 LAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGHDA 173 (257)
T ss_pred HHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCCCc
Confidence 44445678999999999999998663 4899987742 113468999 78999999764
No 125
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.83 E-value=2.5e-08 Score=119.64 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcC-CCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTEN-SNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~-~G~~VlVLE~G~ 81 (1183)
...+||||||+|+.|+++|++|++. +|++|+||||..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 3568999999999999999999984 589999999985
No 126
>PLN02661 Putative thiazole synthesis
Probab=98.81 E-value=3.1e-08 Score=110.55 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=43.4
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe------eC-C----eEEEEEeccEEEEccCccC
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS------KN-R----KSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~------~~-~----~~~~i~A~k~VILAaGa~~ 915 (1183)
.++..+.++.|++++.++.|++|+.++ +++.||.+. .+ + ....|+| |.||+|||+-+
T Consensus 177 tLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g 244 (357)
T PLN02661 177 TIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence 344445667899999999999999986 799999862 11 1 2357899 78999999654
No 127
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.81 E-value=2.4e-08 Score=118.81 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=44.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
|...+++.|++++.+++|++|..+++ +++.+|++.+ + +++| +.||+|||++ ++.++...|+
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~-g---~i~a-~~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTR-G---FIGA-KKVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCC-c---eEEC-CEEEECCChh-hHHHHHHcCC
Confidence 33456678999999999999976532 5677776643 3 5888 5699999997 4566665554
No 128
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.81 E-value=4e-08 Score=115.87 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||||||+|++|+++|++|+++ |++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999998 99999999985
No 129
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.81 E-value=4.5e-08 Score=99.78 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=30.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.++|++|||+|++|+++|+.||+ .|+||+|+|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCC
Confidence 47999999999999999999999 599999999985
No 130
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.80 E-value=5.5e-08 Score=116.62 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=44.2
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEE--eCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF--KNKQRHTVRARKEVILSAGALNSPQLLMLSGIGP 353 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~--~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~ 353 (1183)
.+++.|++|+++++|++|..++++ .++ |.+. ++++..+++|+. ||+|||++ +.+|+...|+..
T Consensus 187 ~a~~~Gv~i~~~t~V~~i~~~~~~---~v~-v~~~~~~~g~~~~i~A~~-VV~AAG~~-s~~La~~~Gi~~ 251 (483)
T TIGR01320 187 YLVQNGTTIRFGHEVRNLKRQSDG---SWT-VTVKNTRTGGKRTLNTRF-VFVGAGGG-ALPLLQKSGIPE 251 (483)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCC---eEE-EEEeeccCCceEEEECCE-EEECCCcc-hHHHHHHcCCCc
Confidence 344569999999999999876542 222 3332 234344689985 99999986 678888888753
No 131
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.80 E-value=3.4e-08 Score=107.80 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=45.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC--------CeEEEEEeccEEEEccCccC-cHHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN--------RKSYTVKCRKEVILSAGTLN-SPQLLML 922 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~--------~~~~~i~A~k~VILAaGa~~-tp~lL~~ 922 (1183)
.|...+.+.|++++.++.|++|+.+++..+++||.+... ....+|+| |-||.|+|... ..+.|.+
T Consensus 105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHHH
Confidence 444455567899999999999998763237999987421 13568999 88999999542 3344443
No 132
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.80 E-value=2.3e-08 Score=120.36 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=57.8
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccC-----cHHHHHHcCCCCccchhhc
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLN-----SPQLLMLSGVGPRPHLEEL 934 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~-----tp~lL~~SGIG~~~~l~~~ 934 (1183)
.+..+++++.+..|++|+.+++ +.+.||... ++++.+.++| |.||+|+|+.+ ++......|=|-. ..-+.
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~~-ma~~a 225 (562)
T COG1053 149 LKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGVA-MAYRA 225 (562)
T ss_pred HHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHHH-HHHhc
Confidence 3447789999999999998874 458898775 4677788888 88999999998 3333333222211 22244
Q ss_pred CCCccccCCCCccccccccc
Q psy8892 935 NIPVIQDLKVGYNMQDHLSM 954 (1183)
Q Consensus 935 gi~v~~dlpVG~nl~dh~~~ 954 (1183)
|.+ .. ..++.|-||..
T Consensus 226 Ga~-l~---dme~~Q~hpt~ 241 (562)
T COG1053 226 GAP-LI---DMEFVQFHPTG 241 (562)
T ss_pred CCc-cc---CCCccccccce
Confidence 544 11 56788888753
No 133
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.79 E-value=4e-08 Score=117.30 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=40.5
Q ss_pred cccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 284 PIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 284 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
..+++.|++|+++++|++|..+++ ++++|+.. ++ ++++++ ||+|+|++ +..|+.
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~~~----~~~~v~t~-~~---~~~a~~-VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVEGG----RITGVQTG-GG---VITADA-YVVALGSY-STALLK 262 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCC----EEEEEEeC-Cc---EEeCCE-EEECCCcc-hHHHHH
Confidence 344567999999999999988766 77777543 33 588976 99999986 555554
No 134
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.79 E-value=3.3e-08 Score=122.30 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=46.5
Q ss_pred ccCCCCeEEEcCceEEEEEeeC-CCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHHHHHh
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDE-NDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQLLMLS 349 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~-~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~LLl~S 349 (1183)
.+++.|++|+.+++|++|..++ ++ +++||++.+ +++..+|+++. ||+|||++ +..|+...
T Consensus 241 ~A~~~Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~a~~-VVnAaGaw-s~~l~~~~ 303 (627)
T PLN02464 241 TAALAGAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVYAKV-VVNAAGPF-CDEVRKMA 303 (627)
T ss_pred HHHhCCcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEEeCE-EEECCCHh-HHHHHHhc
Confidence 4456799999999999998874 22 889998864 45555789985 99999987 67776654
No 135
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.78 E-value=9.4e-08 Score=112.51 Aligned_cols=35 Identities=37% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+|||||||+|++|+++|++|++. |++|+||||+.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 369999999999999999999998 99999999985
No 136
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.78 E-value=6.2e-08 Score=119.48 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
++.|++|++++.|++|+.++++ +|+||.+.+ ++....+.|+ .||||+|++..
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~g---rV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDGN---RARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 3468999999999999986543 899999875 4555678887 59999999864
No 137
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.78 E-value=3.3e-08 Score=117.97 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=42.1
Q ss_pred CC--cEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 865 HN--LKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 865 ~g--~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
.| ++|+++++|+.|..++ +....|... .+ +|+| +.||+|||++ |.+|+..+|++
T Consensus 228 ~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~-~G---~i~A-~~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 228 PGKKISINLNTEVLNIERSN--DSLYKIHTN-RG---EIRA-RFVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred cCCCEEEEeCCEEEEEEecC--CCeEEEEEC-CC---EEEe-CEEEECcChh-HHHHHHHhCCC
Confidence 55 8899999999998875 345555543 23 6899 6799999976 88999999985
No 138
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.78 E-value=5.8e-08 Score=114.72 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=43.1
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
.|...+++.|++++++++|.+|..++ +.+ .|+.. ++ +++| +.||+|+|+ +++.++...|+
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~-~g---~i~a-d~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTT-QG---EYEA-RTLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEEC-CC---EEEe-CEEEECCCc-chHHHHHHhCC
Confidence 34445567899999999999998765 333 44432 22 6888 679999996 47888887776
No 139
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.77 E-value=1.3e-08 Score=122.44 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.3
Q ss_pred cccceEEeeCCCchHHHHHHHHhcC-CCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~-~G~~VlvLE~G~ 691 (1183)
+.++|+||||+|++|+++|++|++. +|.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4578999999999999999999993 389999999985
No 140
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.77 E-value=5.4e-08 Score=116.33 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=47.2
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|+++++|++|+.++++++++||....++ .+++| |.||||+|++...+-++
T Consensus 128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 4445567789999999999999987322789999874332 47888 78999999998755443
No 141
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.76 E-value=5.1e-08 Score=106.85 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||||||+|++|+++|++|+++ |++|+|||+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 68999999999999999999998 99999999985
No 142
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.76 E-value=1.4e-07 Score=115.49 Aligned_cols=52 Identities=31% Similarity=0.452 Sum_probs=40.8
Q ss_pred CCCCeEEEcCceEEEEEeeCCC-CcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 287 KRPNLKVAKRARVTKVLIDEND-NLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~-~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
.+.+++|+.++.|++|+.++++ + +|+||.+.+ +++...|.|+ .||||+|++.
T Consensus 137 ~~~~~~i~~~~~v~~Ll~d~~~~G--rV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFERIFIVKLLLDKNTPN--RIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEcccEEEEEEecCCCCC--eEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 3446799999999999987521 1 899998754 5666778887 5999999985
No 143
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.75 E-value=8.7e-08 Score=112.95 Aligned_cols=33 Identities=39% Similarity=0.505 Sum_probs=31.3
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
||+||||+|++|+++|+.|++ .|++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccC
Confidence 699999999999999999999 599999999985
No 144
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.75 E-value=7.5e-08 Score=115.75 Aligned_cols=52 Identities=12% Similarity=0.295 Sum_probs=39.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+++.|++++.+ .|++|+.++ ++++||.+. ++ .++| +.||||||++..
T Consensus 125 ~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~--g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 125 ILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLD--GE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEEC--CE--EEEe-CeEEECCCcCcC
Confidence 3445556789999876 899988765 789998762 32 5788 689999999975
No 145
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.74 E-value=9e-08 Score=108.44 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=46.7
Q ss_pred HhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCC-eEEEEEeccEEEEccCccC
Q psy8892 855 KAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNR-KSYTVKCRKEVILSAGTLN 915 (1183)
Q Consensus 855 ~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~-~~~~i~A~k~VILAaGa~~ 915 (1183)
.+++..+.+++|++|+.++.+.+|+.+++ ..+.||.+.+.+ +..+++| +.||||+|+++
T Consensus 137 ~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 137 TALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred HHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 33444455679999999999999999982 256699998654 5788999 78999999984
No 146
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.74 E-value=6e-08 Score=115.79 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=43.1
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSG 924 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SG 924 (1183)
|...+++.|++|+++++|++|..++ +++++|+.. ++ +++| +.||+|+|++ +.+++..-|
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~-~~---~~~a-~~VV~a~G~~-~~~l~~~~g 265 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTG-GG---VITA-DAYVVALGSY-STALLKPLG 265 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeC-Cc---EEeC-CEEEECCCcc-hHHHHHHhC
Confidence 4445567899999999999998776 567777643 22 6888 6799999976 566655434
No 147
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.74 E-value=8e-08 Score=96.90 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=32.5
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+.|++|+|+|++||+||++||+ .|+||+|+|+.-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~l 63 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKL 63 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh-CCceEEEEEeec
Confidence 36799999999999999999999 599999999984
No 148
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.74 E-value=2e-07 Score=109.20 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCChh---hhhhcC
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQLLMLSGIGPRD---HLEEMN 361 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~~---~l~~~g 361 (1183)
...|.++++.++|+++..+++ +.||++.+ +|+++.|+|+. ||-|||.| +-+++...+..+.. .....|
T Consensus 175 ~~~Ga~il~~~~v~~~~re~~-----v~gV~~~D~~tg~~~~ira~~-VVNAaGpW-~d~i~~~~~~~~~~~~~vr~skG 247 (532)
T COG0578 175 AEHGAEILTYTRVESLRREGG-----VWGVEVEDRETGETYEIRARA-VVNAAGPW-VDEILEMAGLEQSPHIGVRPSKG 247 (532)
T ss_pred HhcccchhhcceeeeeeecCC-----EEEEEEEecCCCcEEEEEcCE-EEECCCcc-HHHHHHhhcccCCCCccceeccc
Confidence 457999999999999999865 88999986 67889999985 99999986 67888887665432 222345
Q ss_pred CCceecC
Q psy8892 362 IPVIQDL 368 (1183)
Q Consensus 362 i~~~~~~ 368 (1183)
+.+|++.
T Consensus 248 sHlVv~~ 254 (532)
T COG0578 248 SHLVVDK 254 (532)
T ss_pred eEEEecc
Confidence 5555444
No 149
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.72 E-value=9.1e-08 Score=112.05 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||||||+|++|+++|++|++. |++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999985
No 150
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=8e-08 Score=124.25 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=40.9
Q ss_pred CCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 289 PNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 289 ~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.++.+.+++.+++|+.+++ +|+||.+.+ +++...|.|+ .||||+|+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~~g----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTEGG----RAVGAAALNTRTGEFVTVGAK-AVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEeeCC----EEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence 4799999999999998766 999998754 5667788886 59999999863
No 151
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.72 E-value=5.8e-08 Score=97.87 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+-||||||+|++|+++|++||++ |.||+|+||.-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l 63 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL 63 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence 56999999999999999999999 99999999974
No 152
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.72 E-value=2.5e-07 Score=112.42 Aligned_cols=37 Identities=32% Similarity=0.569 Sum_probs=34.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|.++|||||||+|++|+.+|+.||++ |++|+||||+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d 39 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDD 39 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 56789999999999999999999998 99999999985
No 153
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.71 E-value=1.4e-07 Score=116.75 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=55.6
Q ss_pred hhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHcCCCCc-cchhhcCC
Q psy8892 860 PIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPR-PHLEELNI 936 (1183)
Q Consensus 860 ~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~-~~l~~~gi 936 (1183)
..+++.|++++.+++|++|..++++++++||++.+ +++..+|+| +.||+|||++ +.+|+...|.... ......|+
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g~~~~~~I~p~kG~ 317 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMADGKAKPMICPSSGV 317 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhccCcCCCceEeeeeE
Confidence 44567899999999999998864126899998864 455567899 7799999976 7888887763222 13334455
Q ss_pred Cccc
Q psy8892 937 PVIQ 940 (1183)
Q Consensus 937 ~v~~ 940 (1183)
.++.
T Consensus 318 hlvl 321 (627)
T PLN02464 318 HIVL 321 (627)
T ss_pred EEec
Confidence 4443
No 154
>KOG2820|consensus
Probab=98.71 E-value=8.6e-08 Score=102.59 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=45.3
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHh
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLS 349 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~S 349 (1183)
.+...++..|+.++.+..|..+.+.+..+ ..++|.+.++. .+.|++ +|+++|+| +.+||-.|
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~--~~v~V~Tt~gs---~Y~akk-iI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEG--NHVSVQTTDGS---IYHAKK-IIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCC--ceeEEEeccCC---eeecce-EEEEecHH-HHhhcCcc
Confidence 44455667899999999999998765422 55566655544 578987 99999997 66777654
No 155
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=1.6e-07 Score=114.07 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=34.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|.++|||||||+|++|+.+|+.||++ |++|+||||+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d 39 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDD 39 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 56779999999999999999999998 99999999995
No 156
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.70 E-value=1.3e-07 Score=113.33 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=45.6
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
|...+++.|++|+++++|++|..+++ +.+ .|.+. ..++..+++| +.||+|||++ +.+|+...||.
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~~-s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNT-RFVFVGAGGG-ALPLLQKSGIP 250 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEEC-CEEEECCCcc-hHHHHHHcCCC
Confidence 33445567999999999999987642 222 23332 2343456899 6799999976 78888888885
No 157
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.70 E-value=1.8e-07 Score=112.48 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||||||||++|+++|..|+++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999985
No 158
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.69 E-value=2.9e-07 Score=109.57 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=45.4
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEE--eCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF--KNKQRHTVRARKEVILSAGALNSPQLLMLSGIGP 353 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~--~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~ 353 (1183)
+...+.+..|++|+++++|+.|..++++ .++ |.+. ..++..+++|+. ||+|||++ +.+|+..+|+..
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~Ad~-VV~AAGaw-S~~La~~~Gi~~ 258 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVADY-VFIGAGGG-AIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEcCE-EEECCCcc-hHHHHHHcCCCc
Confidence 3343334568999999999999876332 332 2222 233233688985 99999986 788888888754
No 159
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.67 E-value=5e-08 Score=99.50 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.++||+|||+|++|+++|++||++ |+||+|+|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 369999999999999999999999 99999999985
No 160
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.67 E-value=2.2e-07 Score=111.58 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=44.5
Q ss_pred hhhhhcCC-CcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 858 IRPIRKRH-NLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 858 L~~~~~~~-g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
|...+++. |++|+++++|++|..+++ +++. |.+. ..++..+|+| +.||+|||++ +.+|+..+||.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A-~~VVvaAGg~-s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRA-KFVFIGAGGG-ALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCC
Confidence 33344444 489999999999987653 3332 3332 2333346899 6799999976 68888888884
No 161
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.66 E-value=1.8e-07 Score=112.86 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.3
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~ 341 (1183)
..+..+++|+.+..|++|+.++++ .+.||...+ +++...++++ .||+|+|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~---~v~Gvv~~~~~~g~~~~~~ak-avilaTGG~g 202 (562)
T COG1053 148 LLKFSGIEIFDEYFVLDLLVDDGG---GVAGVVARDLRTGELYVFRAK-AVILATGGAG 202 (562)
T ss_pred HHHhhcchhhhhhhhhhheecCCC---cEEEEEEEEecCCcEEEEecC-cEEEccCCce
Confidence 334467899999999999998773 488987764 6777778885 5999999997
No 162
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.65 E-value=1.3e-07 Score=103.26 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=32.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+|||+|||+|++|+++|+.|+++ |++|+||||+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 68999999999999999999998 99999999986
No 163
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.63 E-value=3.2e-08 Score=117.56 Aligned_cols=64 Identities=28% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIG 352 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig 352 (1183)
.+..++.+.|++|++++.|..++.+++ +++||.+...++..+|+|+- ||-|+| ...|+.++|..
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~~----~i~~V~~~~~~g~~~i~A~~-~IDaTG---~g~l~~~aG~~ 158 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDGG----RITGVIVETKSGRKEIRAKV-FIDATG---DGDLAALAGAP 158 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----cccccccccccccccccccc-cccccc---ccccccccccc
Confidence 455555678999999999999999987 99999998654577899974 888999 35788888763
No 164
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.60 E-value=3.2e-07 Score=109.74 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeC-CCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDE-NDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~-~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
.|...+++.|++|+++++|++|+.++ ++ +++||....++ .+++++ .||||+|++...+-++
T Consensus 128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g---~v~gv~~~~~~--~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 128 ALYSSAERLGVEIRYGIAVDRIPPEAFDG---AHDGPLTTVGT--HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecCCCC---eEEEEEEcCCc--EEEEcC-EEEEcCCCcccCHHHH
Confidence 34444567799999999999999873 22 89998764333 468886 5999999998655443
No 165
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.59 E-value=1.9e-07 Score=111.05 Aligned_cols=35 Identities=40% Similarity=0.608 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+.|||||||+|++|+++|+.||++ |++|+||||+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~ 38 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGN 38 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 469999999999999999999998 99999999996
No 166
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.59 E-value=5.6e-07 Score=109.32 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=45.0
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHH-cCCC
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLML-SGVG 926 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~-SGIG 926 (1183)
.+.+.|++++++++|++|..++ + ..+|++.+ +++..+|+| +.||+|||++ +.+++.. .|+.
T Consensus 164 ~A~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~~g~~ 227 (508)
T PRK12266 164 DAAERGAEILTRTRVVSARREN--G-LWHVTLEDTATGKRYTVRA-RALVNAAGPW-VKQFLDDGLGLP 227 (508)
T ss_pred HHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEEcCCCCEEEEEc-CEEEECCCcc-HHHHHhhccCCC
Confidence 4567899999999999998764 3 34676654 455678999 7799999976 6777653 3553
No 167
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.57 E-value=2.3e-07 Score=112.73 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=45.2
Q ss_pred hhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC-CeEEEEEeccEEEEccCccCcHHHHH-HcCC
Q psy8892 860 PIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN-RKSYTVKCRKEVILSAGTLNSPQLLM-LSGV 925 (1183)
Q Consensus 860 ~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~-~~~~~i~A~k~VILAaGa~~tp~lL~-~SGI 925 (1183)
..+++.|++++.+++|++|..++ + ..+|.+.+. +++.+|+| +.||.|||++ +.+++. +.|+
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~~g~ 225 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIHRVAGS 225 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHhhccCC
Confidence 34567899999999999998765 3 456766543 55678999 7799999966 677766 3354
No 168
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.57 E-value=3.4e-08 Score=117.41 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
.|...+++.|++|++++.|..++.++ ++++||++...++..+|+| |.||-|+| ...|+.++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccc-cccccccc---cccccccccc
Confidence 34455567899999999999999987 7999999986445889999 78999999 3578888876
No 169
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.56 E-value=9.5e-07 Score=100.32 Aligned_cols=57 Identities=32% Similarity=0.571 Sum_probs=45.4
Q ss_pred hhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCC-eEEEEEeCcEEEEcCCCC
Q psy8892 280 AFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNK-QRHTVRARKEVILSAGAL 340 (1183)
Q Consensus 280 ~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g-~~~~i~A~k~VILAAGai 340 (1183)
+++..+.+++|++|+.++.+.+|+.+++. .+.||.+...+ +..+++|+. ||||+|++
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~~~~---~~~Gv~~~~~~~~~~~~~a~~-vVLATGG~ 195 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIEDGI---GVAGVLVLNRNGELGTFRAKA-VVLATGGL 195 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhcCCc---eEeEEEEecCCCeEEEEecCe-EEEecCCC
Confidence 34455566799999999999999999872 34599987654 567899975 99999986
No 170
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.55 E-value=6.9e-07 Score=105.17 Aligned_cols=34 Identities=41% Similarity=0.455 Sum_probs=32.3
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+||++|||+|++|+++|+.|++ .|++|+||||+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 6899999999999999999999 599999999995
No 171
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.53 E-value=5.8e-07 Score=113.17 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||||||+|++|+++|++|+++ |++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 58999999999999999999998 99999999985
No 172
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.52 E-value=2.6e-06 Score=101.21 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=45.8
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|...+++.|++|+++|+|++|..+.+++..+|+||++.. .++...+.+++.||++.|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 334456789999999999999986222222899999986 3344567777889999999853
No 173
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.51 E-value=1.5e-06 Score=103.50 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=44.9
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEE--eeCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEF--SKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~--~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
++..+.+..|++++++++|+.|..+++ +..+ |.+ ...++..+++| +.||+|||++ +.+|+..+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~A-d~VV~AAGaw-S~~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVA-DYVFIGAGGG-AIPLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCC
Confidence 343333456999999999999987632 3332 332 22333336888 6799999965 78899999874
No 174
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=6.4e-07 Score=93.23 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=54.5
Q ss_pred CeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCChhhhh-----------
Q psy8892 290 NLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGPRDHLE----------- 358 (1183)
Q Consensus 290 g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~~~~l~----------- 358 (1183)
+++|+++++|++|...++ .-++..+++.....++. |||+.=+-+++.||--+..+-+..|+
T Consensus 117 dL~V~~~~rVt~v~~~~~-------~W~l~~~~g~~~~~~d~-vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc 188 (331)
T COG3380 117 DLTVVLETRVTEVARTDN-------DWTLHTDDGTRHTQFDD-VVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPC 188 (331)
T ss_pred cchhhhhhhhhhheecCC-------eeEEEecCCCcccccce-EEEecCCCcchhhcCcccccchHHHHHhhccceehhH
Confidence 689999999999988754 22333333333566765 99999999999998655333333232
Q ss_pred ---hcCCCceecCc-cccccccCc
Q psy8892 359 ---EMNIPVIQDLK-VGYNLQDHV 378 (1183)
Q Consensus 359 ---~~gi~~~~~~p-VG~~l~dh~ 378 (1183)
.+|.+...+.| -|-.+.+||
T Consensus 189 ~s~~lg~~q~l~~P~~G~~vdg~~ 212 (331)
T COG3380 189 WSAVLGYPQPLDRPWPGNFVDGHP 212 (331)
T ss_pred HHHHhcCCccCCCCCCCcccCCCe
Confidence 24666677888 786666675
No 175
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.50 E-value=5.6e-07 Score=95.53 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=48.5
Q ss_pred hhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEE--------eC-------CeEEEEEeCcEEEEcCCCCCC
Q psy8892 278 SRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF--------KN-------KQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 278 ~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~--------~~-------g~~~~i~A~k~VILAAGai~s 342 (1183)
....+.++.++.-+++...++|.+|...++ +|+||.-. ++ .....+.|. .||++.|+|+-
T Consensus 155 Fvr~~re~~~~~~v~f~~RHrV~~l~~t~g----rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGG 229 (552)
T COG3573 155 FVRRLREAQRRGRVTFRFRHRVDGLTTTGG----RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGG 229 (552)
T ss_pred HHHHHHHHHhCCceEEEeeeeccceEeeCC----eEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCC
Confidence 344455566678899999999999999988 99998632 11 013567886 59999999985
Q ss_pred hHHHHHh
Q psy8892 343 PQLLMLS 349 (1183)
Q Consensus 343 p~LLl~S 349 (1183)
.+-|.+-
T Consensus 230 nhelVRr 236 (552)
T COG3573 230 NHELVRR 236 (552)
T ss_pred CHHHHHh
Confidence 5555443
No 176
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.50 E-value=4.5e-07 Score=106.96 Aligned_cols=37 Identities=46% Similarity=0.781 Sum_probs=34.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREE 693 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~ 693 (1183)
.+||+||||+|+||++||++|++ .|++|+||||+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 47999999999999999999999 59999999999754
No 177
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.49 E-value=8.7e-07 Score=104.56 Aligned_cols=36 Identities=47% Similarity=0.801 Sum_probs=34.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
.+|||||||+|++|+++|++||++ |++|+||||+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 479999999999999999999999 999999999975
No 178
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=2.3e-07 Score=111.94 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=35.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESL 695 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~ 695 (1183)
..+|+||||+|.+||++|.+||+ +|++|+||||....++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCCCc
Confidence 36899999999999999999999 6999999999876543
No 179
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.49 E-value=5.8e-07 Score=105.24 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=31.3
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
||++|||+|++|+++|++|++ .|++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 699999999999999999999 599999999985
No 180
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.48 E-value=8.2e-07 Score=106.46 Aligned_cols=36 Identities=39% Similarity=0.484 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..+|||||||+|+||+.+|..||+. |++|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 3569999999999999999999998 99999999874
No 181
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.47 E-value=2.1e-06 Score=101.12 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=37.5
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESL 695 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~ 695 (1183)
|+++||+||||+|.+|+++|..|++ .|+||++||+....++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence 5778999999999999999999999 6999999999987653
No 182
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.46 E-value=1e-06 Score=104.65 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=47.5
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCC--CCeEEEEEEee--CCeEEEEEeccEEEEccCccCcH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPI--TKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSP 917 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~--~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp 917 (1183)
|...+++.|++++++++|++|+++.+ .++|+||++.. .++.+.+.+++.||+++|++...
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 33456788999999999999999622 27899999986 34556678889999999999643
No 183
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.46 E-value=7.9e-07 Score=105.84 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=46.0
Q ss_pred HHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 853 ASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 853 ~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
..+.+|...+++.|++|+++++|++|..++ +++++|.. +++ +++| +-||+|+|. + ..+....|+.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~--~g~--~i~A-~~VI~A~G~-~-s~l~~~lgl~ 173 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEA--DGD--VIEA-KTVILADGV-N-SILAEKLGMA 173 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEc--CCc--EEEC-CEEEEEeCC-C-HHHHHHcCCC
Confidence 344566666778899999999999998775 66766652 232 6888 779999986 3 3455555553
No 184
>PRK10015 oxidoreductase; Provisional
Probab=98.43 E-value=5.6e-07 Score=106.96 Aligned_cols=36 Identities=39% Similarity=0.649 Sum_probs=33.7
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
++|||||||+|++|+++|+.||++ |++|+||||++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999998 999999999863
No 185
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.41 E-value=1.1e-06 Score=105.53 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
..+||+||||+|+||+.||..||+ .|++|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 347999999999999999999999 699999999874
No 186
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.39 E-value=2.4e-06 Score=100.76 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=36.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEE 83 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~ 83 (1183)
|+++|||||||+|.+||++|..|+++ |+|||+|||....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~y 39 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYY 39 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCc
Confidence 56789999999999999999999999 9999999998753
No 187
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.39 E-value=8.2e-07 Score=104.98 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=33.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..++||||||+|++|+++|++|+++ |.+|+|+|++.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 4578999999999999999999999 99999999986
No 188
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.38 E-value=6.2e-07 Score=109.15 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=45.0
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
|...+++.|++|++++.|++|..+++ ++.||++.++. ++.|++ ||+|+|...+-..|+
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~~g~---~~~ad~-vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILENG----KAVGVKLADGE---KIYAKR-IVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecCC----cEEEEEeCCCC---EEEcCE-EEECCChHHHHHHhC
Confidence 44455677999999999999999876 89999875543 578986 999999876654443
No 189
>PRK10015 oxidoreductase; Provisional
Probab=98.37 E-value=1e-06 Score=104.83 Aligned_cols=36 Identities=39% Similarity=0.638 Sum_probs=33.5
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
++||+||||+|+||+++|+.||+ .|++|+||||++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 46999999999999999999999 6999999999964
No 190
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=6.8e-07 Score=107.89 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
..+||||||||.+|+++|.+||++ |++|+||||.....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCC
Confidence 468999999999999999999999 99999999887543
No 191
>KOG4254|consensus
Probab=98.37 E-value=4.7e-07 Score=100.41 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=51.3
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLML 922 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~ 922 (1183)
.+.+.+++.|..|.|++.|.+|++|+ |+|+||++.++. ++++ |.||..|+-+.|-.-|+-
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~---ev~s-k~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGT---EVRS-KIVVSNATPWDTFEKLLP 328 (561)
T ss_pred HHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCc---EEEe-eeeecCCchHHHHHHhCC
Confidence 45577889999999999999999998 899999998776 6777 889999999998855543
No 192
>KOG2844|consensus
Probab=98.37 E-value=9.6e-07 Score=102.23 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=42.3
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALN 341 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~ 341 (1183)
.|..++++-|+.|+.+|.|++|..+.+ +..||++..+. |++.+ ||=|||.|.
T Consensus 192 ala~~A~~~GA~viE~cpV~~i~~~~~----~~~gVeT~~G~----iet~~-~VNaaGvWA 243 (856)
T KOG2844|consen 192 ALARAASALGALVIENCPVTGLHVETD----KFGGVETPHGS----IETEC-VVNAAGVWA 243 (856)
T ss_pred HHHHHHHhcCcEEEecCCcceEEeecC----CccceeccCcc----eecce-EEechhHHH
Confidence 344456778999999999999999887 55699987664 89986 999999774
No 193
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.35 E-value=1.1e-06 Score=106.88 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=45.5
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
-|...+++.|++|+++++|++|..++ +++.||++.++. ++.| +.||+|+|...+-..|
T Consensus 234 ~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~---~~~a-d~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 234 SLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLADGE---KIYA-KRIVSNATRWDTFGKL 291 (493)
T ss_pred HHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCC---EEEc-CEEEECCChHHHHHHh
Confidence 35556678899999999999999876 689999876543 5778 6799999987665444
No 194
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.33 E-value=1.9e-06 Score=108.60 Aligned_cols=34 Identities=35% Similarity=0.589 Sum_probs=32.0
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++|+||||+|++|+++|+.|++ .|++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 4799999999999999999999 599999999985
No 195
>KOG0042|consensus
Probab=98.33 E-value=2.1e-07 Score=105.14 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=62.8
Q ss_pred CCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEE
Q psy8892 832 CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVIL 909 (1183)
Q Consensus 832 ~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VIL 909 (1183)
..+..|...+..+..+..|.....+. -+.+.|++++...+|.+|+.+++ +++.|+++++ .|++++|+| |.||-
T Consensus 207 ~~~L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~A-k~VVN 281 (680)
T KOG0042|consen 207 KDNLKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRA-KVVVN 281 (680)
T ss_pred ccCceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEE-EEEEe
Confidence 34455655555555555565444322 24578999999999999999986 6899999985 689999999 88999
Q ss_pred ccCccCcHHHHHH
Q psy8892 910 SAGTLNSPQLLML 922 (1183)
Q Consensus 910 AaGa~~tp~lL~~ 922 (1183)
|||.| |-.|++.
T Consensus 282 ATGpf-sDsIr~M 293 (680)
T KOG0042|consen 282 ATGPF-SDSIRKM 293 (680)
T ss_pred CCCCc-cHHHHhh
Confidence 99988 4555554
No 196
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.32 E-value=2.6e-06 Score=98.12 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHh
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLS 349 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~S 349 (1183)
|....++.|++++.+++|+++..+++ ++++|.+..+ +...++|++ ||||+|+|-|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~----~v~~V~t~~g-~~~~l~AD~-vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN----RVTRIHTRNH-RDIPLRADH-FVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC----eEEEEEecCC-ccceEECCE-EEEccCCCcCHHHHhhc
Confidence 33344567999999999999999887 8888775433 234789986 99999999888886553
No 197
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.31 E-value=7.9e-07 Score=94.66 Aligned_cols=61 Identities=26% Similarity=0.404 Sum_probs=36.1
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSG 350 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SG 350 (1183)
|+...+++.+++++++++|+++..+++ + --|++. ++ .+++|+. ||+|+|.+..|+.+..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~----~-w~v~~~-~~--~~~~a~~-VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD----G-WTVTTR-DG--RTIRADR-VVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT----T-EEEEET-TS---EEEEEE-EEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc----E-EEEEEE-ec--ceeeeee-EEEeeeccCCCCcccccc
Confidence 555555566788999999999999976 3 123332 33 4688975 999999999998876443
No 198
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.31 E-value=4.3e-06 Score=99.73 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
+....+|+|||||++|+++|.+|.++ |.+|+|+|++..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~ 44 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQ 44 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence 34468999999999999999999998 999999999863
No 199
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.31 E-value=2.2e-06 Score=101.29 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=33.9
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+.++|+||||+|++|+++|+.|++ .|.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCcc
Confidence 457899999999999999999999 5999999999963
No 200
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.29 E-value=4.3e-06 Score=89.00 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=50.4
Q ss_pred HHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--------eC-------CeEEEEEeccEEEEccCccCcH
Q psy8892 853 ASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--------KN-------RKSYTVKCRKEVILSAGTLNSP 917 (1183)
Q Consensus 853 ~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--------~~-------~~~~~i~A~k~VILAaGa~~tp 917 (1183)
.....++.+.++.-+++...++|.+|+..+ ++++||+-. ++ .+..++.| ..||++.|+|+-.
T Consensus 154 pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGn 230 (552)
T COG3573 154 PFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGN 230 (552)
T ss_pred HHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCC
Confidence 334445555667889999999999999987 899998642 11 12357888 7899999999877
Q ss_pred HHHHHc
Q psy8892 918 QLLMLS 923 (1183)
Q Consensus 918 ~lL~~S 923 (1183)
+-|-+-
T Consensus 231 helVRr 236 (552)
T COG3573 231 HELVRR 236 (552)
T ss_pred HHHHHh
Confidence 766654
No 201
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.29 E-value=1.2e-06 Score=107.28 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=44.8
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLM 921 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~ 921 (1183)
.|...+++.|++|++++.|++|..++ +++++|++.++. ++.| +.||+|++...+...|+
T Consensus 224 al~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~---~~~a-d~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 224 AMAKLAEDLGGELRLNAEVIRIETEG--GRATAVHLADGE---RLDA-DAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCC---EEEC-CEEEECCcHHHHHHHhc
Confidence 34455667899999999999999876 688898875433 5788 66999988766665553
No 202
>PRK06185 hypothetical protein; Provisional
Probab=98.28 E-value=8.9e-06 Score=96.81 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=46.6
Q ss_pred hhhhh-hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 857 FIRPI-RKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 857 ~L~~~-~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
+|... .+.+|++++.++.|+++..++ +++++|.+...+++.+++| +-||.|.|+. |. +-...||.
T Consensus 113 ~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a-~~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 113 FLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRA-DLVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred HHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEe-CEEEECCCCc-hH-HHHHcCCC
Confidence 34343 345799999999999998876 6788888765444457899 7788888865 43 44555664
No 203
>KOG2844|consensus
Probab=98.28 E-value=1.3e-06 Score=101.20 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=109.3
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCe-EEEEcCCCCCCCCcccccccccccCCCCccCccccCccccccCCCCCeeec
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWT-VLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNW 734 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~-VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1183)
...|+||||+|.+|+.+|++||+ .|.+ ++++|+....
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~lt----------------------------------------- 75 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSRLT----------------------------------------- 75 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeeeec-----------------------------------------
Confidence 35799999999999999999999 6998 5555655321
Q ss_pred cccceecCcccccceeEe--eCCccccchhhccCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCCCh
Q psy8892 735 PRGKAMGGTSVINYMVYS--RGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTP 812 (1183)
Q Consensus 735 ~~G~~lGGsS~~n~~~~~--r~~~~d~~~w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 812 (1183)
-|++-+.++.+. |+++.+.+..+. +-...+.+.|.... ....+-..|.+.+..+..+..
T Consensus 76 ------sgttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtg----l~tGwiq~G~~~lAs~~~R~d 136 (856)
T KOG2844|consen 76 ------SGTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETG----LHTGWIQNGGIFLASNRQRLD 136 (856)
T ss_pred ------cccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcC----CCcceecCCceEEecCHHHHH
Confidence 112222222222 333333332211 11223333333221 111223456666666665555
Q ss_pred HHHHHHHHHHHCCCCCCCCCC-------------CCceeeeecccccCCccc-hHHHhhhhhhhcCCCcEEEcCcEEEEE
Q psy8892 813 LSAAFLEAGSELGYDQVDHCE-------------NPIGFSYVLANKIRGARQ-SASKAFIRPIRKRHNLKVAKEARVTKI 878 (1183)
Q Consensus 813 ~~~~~~~~~~~~G~~~~d~~~-------------~~~g~~~~~~~~~~g~r~-~~~~~~L~~~~~~~g~~i~~~t~V~~I 878 (1183)
..+.++......|....-++. ...|.-+.| .+|..- ...-..|..++++.|+.|..++.|++|
T Consensus 137 e~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P---~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i 213 (856)
T KOG2844|consen 137 EYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSP---GDGVMDPAGLCQALARAASALGALVIENCPVTGL 213 (856)
T ss_pred HHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecC---CCcccCHHHHHHHHHHHHHhcCcEEEecCCcceE
Confidence 566666666666655421110 011111111 122211 112223445677899999999999999
Q ss_pred EEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 879 LIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 879 ~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
..+. ++..||++..+ .|++ ..||-|||.+ .-.+-.++|+
T Consensus 214 ~~~~--~~~~gVeT~~G----~iet-~~~VNaaGvW-Ar~Vg~m~gv 252 (856)
T KOG2844|consen 214 HVET--DKFGGVETPHG----SIET-ECVVNAAGVW-AREVGAMAGV 252 (856)
T ss_pred Eeec--CCccceeccCc----ceec-ceEEechhHH-HHHhhhhcCC
Confidence 9887 34559998765 5888 4588888855 4444455654
No 204
>KOG2415|consensus
Probab=98.28 E-value=2.8e-06 Score=93.08 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=53.2
Q ss_pred chhhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC-----C-------eEEEEEeCcEEEEcCCCCC--
Q psy8892 276 SASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN-----K-------QRHTVRARKEVILSAGALN-- 341 (1183)
Q Consensus 276 s~~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~-----g-------~~~~i~A~k~VILAAGai~-- 341 (1183)
.-...+|...++..|++|+.+..+.+|++++++ .|.||.+.+- | +-..++|+. -|+|-|.-+
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~-TifAEGc~G~L 258 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKV-TIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceeccee-EEEeccccchh
Confidence 345567777777889999999999999998876 8999987641 1 123578864 888888765
Q ss_pred ChHHHHHhCC
Q psy8892 342 SPQLLMLSGI 351 (1183)
Q Consensus 342 sp~LLl~SGi 351 (1183)
|.+++.+-++
T Consensus 259 skqi~kkf~L 268 (621)
T KOG2415|consen 259 SKQIIKKFDL 268 (621)
T ss_pred HHHHHHHhCc
Confidence 5677766544
No 205
>PRK06185 hypothetical protein; Provisional
Probab=98.28 E-value=5.9e-06 Score=98.33 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=34.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+..++||+|||+|++|+++|..|++. |.+|+|||+.+
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 34679999999999999999999998 99999999985
No 206
>KOG2415|consensus
Probab=98.28 E-value=3.5e-06 Score=92.33 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=57.5
Q ss_pred cchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee-----CC-------eEEEEEeccEEEEccCccC--
Q psy8892 850 RQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK-----NR-------KSYTVKCRKEVILSAGTLN-- 915 (1183)
Q Consensus 850 r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~-----~~-------~~~~i~A~k~VILAaGa~~-- 915 (1183)
+..-...||...++..|++|.....+.+++++++ +.|.||.+.+ +| +-..++| |..|.|-|.-+
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~L 258 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSL 258 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchh
Confidence 4556777898888999999999999999999986 7899998753 11 1246888 67888887665
Q ss_pred cHHHHHHcCC
Q psy8892 916 SPQLLMLSGV 925 (1183)
Q Consensus 916 tp~lL~~SGI 925 (1183)
|-|++.+-++
T Consensus 259 skqi~kkf~L 268 (621)
T KOG2415|consen 259 SKQIIKKFDL 268 (621)
T ss_pred HHHHHHHhCc
Confidence 6788877644
No 207
>KOG2404|consensus
Probab=98.26 E-value=3.2e-06 Score=89.64 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=39.9
Q ss_pred CcEEEcCcEEEEEEEcCCCCeEEEEEEee-CCeEEEEEeccEEEEccCccCc
Q psy8892 866 NLKVAKEARVTKILIDPITKRTYGVEFSK-NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 866 g~~i~~~t~V~~I~~~~~~gra~GV~~~~-~~~~~~i~A~k~VILAaGa~~t 916 (1183)
-++|+++++|.+|+.++ ++|.||+|.+ +++...+.+ ..||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 48999999999999655 8999999985 455556666 579999999985
No 208
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.25 E-value=7.2e-06 Score=93.13 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=50.6
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGP 353 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~ 353 (1183)
++..+.+++|+++.++++|++|...+++. -.+-|.-..+++..+++|+ -|+|.||+. +=.||++|||..
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~--W~v~~~~~~~~~~~~v~a~-FVfvGAGG~-aL~LLqksgi~e 255 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGR--WEVKVKDLKTGEKREVRAK-FVFVGAGGG-ALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCC--EEEEEEecCCCCeEEEECC-EEEECCchH-hHHHHHHcCChh
Confidence 44444556799999999999999987742 1122222235667789997 599999985 888999999954
No 209
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.24 E-value=3.2e-06 Score=95.93 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=51.1
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCC
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG 926 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG 926 (1183)
++..+.++.|++|.++++|++|...+++.=.+-|.-...++..+|+| |-|++.||+. +=.||+.|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a-~FVfvGAGG~-aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRA-KFVFVGAGGG-ALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEEC-CEEEECCchH-hHHHHHHcCCh
Confidence 34444556799999999999999887532233333334567789999 7899999986 78899999993
No 210
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.24 E-value=3.9e-06 Score=87.56 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhh-----------
Q psy8892 865 HNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEE----------- 933 (1183)
Q Consensus 865 ~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~----------- 933 (1183)
.+++|+++++|++|...++ .-++..+++.....+ +.|||+.=+-+++.||--+.++-+..|+.
T Consensus 116 tdL~V~~~~rVt~v~~~~~-----~W~l~~~~g~~~~~~-d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~ 189 (331)
T COG3380 116 TDLTVVLETRVTEVARTDN-----DWTLHTDDGTRHTQF-DDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW 189 (331)
T ss_pred ccchhhhhhhhhhheecCC-----eeEEEecCCCccccc-ceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence 4789999999999987642 234444233334455 66999999999999886554444443433
Q ss_pred ---cCCCccccCC-CCcccccccccceEEEE
Q psy8892 934 ---LNIPVIQDLK-VGYNMQDHLSMAGLVFL 960 (1183)
Q Consensus 934 ---~gi~v~~dlp-VG~nl~dh~~~~~~~~~ 960 (1183)
+|.+...+.| -|..+.+|+.. .+...
T Consensus 190 s~~lg~~q~l~~P~~G~~vdg~~la-Wla~d 219 (331)
T COG3380 190 SAVLGYPQPLDRPWPGNFVDGHPLA-WLARD 219 (331)
T ss_pred HHHhcCCccCCCCCCCcccCCCeee-eeecc
Confidence 4556667778 78666777653 34333
No 211
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.23 E-value=6.4e-06 Score=98.35 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=35.2
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+..++||+|||+|++|+++|..|+++ |.+|+||||.+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 51 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQP 51 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCC
Confidence 455679999999999999999999998 99999999986
No 212
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.20 E-value=3e-06 Score=90.17 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=39.8
Q ss_pred HhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcC
Q psy8892 855 KAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSG 924 (1183)
Q Consensus 855 ~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SG 924 (1183)
..||...+++.+++++++++|+++..+++ + --|++.++ .+++| +.||+|+|.+..|+.+..-|
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~-w~v~~~~~---~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRRDGD--G-WTVTTRDG---RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEEETT--T-EEEEETTS----EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEEecc--E-EEEEEEec---ceeee-eeEEEeeeccCCCCcccccc
Confidence 34777788888999999999999999873 3 23444332 47788 67999999999999887655
No 213
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.20 E-value=2.1e-06 Score=101.24 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=40.3
Q ss_pred HHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHH
Q psy8892 854 SKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQ 918 (1183)
Q Consensus 854 ~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~ 918 (1183)
....|...+++.|+++++++.|++|..++ + ...|++ +++ ++.+ +.||+|+|+...|+
T Consensus 107 v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~-~~~v~~--~~~--~i~a-d~VIlAtG~~s~p~ 163 (400)
T TIGR00275 107 VLDALLNELKELGVEILTNSKVKSIKKDD--N-GFGVET--SGG--EYEA-DKVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecC--C-eEEEEE--CCc--EEEc-CEEEECCCCcccCC
Confidence 33445555667899999999999997654 3 334544 232 5788 67999999987664
No 214
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.19 E-value=4.9e-06 Score=97.36 Aligned_cols=59 Identities=25% Similarity=0.273 Sum_probs=45.0
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
.+....++.|++|+++++|+++..+++ +++++. ..+++...++++. ||||+|.+.+.-|
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~----~V~~v~-~~~g~~~~i~AD~-VVLAtGrf~s~GL 322 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEGG----RVTAVW-TRNHGDIPLRARH-FVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCC----EEEEEE-eeCCceEEEECCE-EEEeCCCcccCce
Confidence 344455567999999999999998766 777765 3445556789985 9999999866654
No 215
>KOG2404|consensus
Probab=98.19 E-value=2.3e-05 Score=83.29 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=40.7
Q ss_pred CeEEEcCceEEEEEeeCCCCcceEEEEEEEe-CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 290 NLKVAKRARVTKVLIDENDNLKRATGVEFFK-NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 290 g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~-~g~~~~i~A~k~VILAAGai~s 342 (1183)
-++|+.+++|.+|+.+++ +|.||+|.+ ++++..+.++. ||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n~g----kVsgVeymd~sgek~~~~~~~-VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG----KVSGVEYMDASGEKSKIIGDA-VVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCC----eEEEEEEEcCCCCccceecCc-eEEecCCcCc
Confidence 479999999999997776 999999987 56666677765 9999999984
No 216
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.18 E-value=3.7e-06 Score=95.73 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=37.3
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCCh
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSP 343 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp 343 (1183)
...+|++|+ +.+|++|..+++ +|.||...++. .+.++. ||||+|.|...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~----~v~GV~~~~g~---~~~a~~-vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG----KVKGVVTKDGE---EIEADA-VVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT----EEEEEEETTSE---EEEECE-EEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEecCC----eEEEEEeCCCC---EEecCE-EEEecccccCc
Confidence 346899997 679999999988 99999875433 688975 99999996443
No 217
>PLN02985 squalene monooxygenase
Probab=98.15 E-value=2.2e-05 Score=95.12 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=33.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
-+..+||||||+|++|+++|..|+++ |++|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 34579999999999999999999998 99999999974
No 218
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.15 E-value=1.3e-05 Score=95.72 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHhhhhhhhcCCCcE--EEcCcEEEEEEEcCCCCeEEEEEEeeCC-eEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 854 SKAFIRPIRKRHNLK--VAKEARVTKILIDPITKRTYGVEFSKNR-KSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 854 ~~~~L~~~~~~~g~~--i~~~t~V~~I~~~~~~gra~GV~~~~~~-~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
...||...+++-|+. |.++++|++|..++ ++. -|++..++ ...+..+ +.||+|+|.+..|.+....|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w-~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKW-RVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeE-EEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCc
Confidence 345787777777887 99999999997754 322 23333322 2334556 679999999988988766665
No 219
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.14 E-value=1.9e-05 Score=94.37 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.9
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
..++|++|||+|++|+++|..|++ .|++|+||||.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCc
Confidence 446999999999999999999999 6999999999963
No 220
>KOG0042|consensus
Probab=98.14 E-value=1.1e-06 Score=99.59 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCCcceeeeecccCCCcccchhhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEE
Q psy8892 257 PNAIGFSYVLANTGNGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVI 334 (1183)
Q Consensus 257 ~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VI 334 (1183)
.+..|......+..+-+|.....++ -+.+.|++++-..+|.+|+.++++ ++.|+++++ +|+++.|+|+ .||
T Consensus 208 ~~L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~Ak-~VV 280 (680)
T KOG0042|consen 208 DNLKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIRAK-VVV 280 (680)
T ss_pred cCceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEEEE-EEE
Confidence 3444433333334444554443322 134679999999999999998876 899999987 7889999996 488
Q ss_pred EcCCCCCChHHHH
Q psy8892 335 LSAGALNSPQLLM 347 (1183)
Q Consensus 335 LAAGai~sp~LLl 347 (1183)
-|+|.| |-.|+.
T Consensus 281 NATGpf-sDsIr~ 292 (680)
T KOG0042|consen 281 NATGPF-SDSIRK 292 (680)
T ss_pred eCCCCc-cHHHHh
Confidence 899988 444443
No 221
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.14 E-value=2.4e-06 Score=104.57 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=43.5
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl 347 (1183)
|...+++.|++|++++.|++|..+++ ++++|++.++. ++.|++ ||+|++...+...|+
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~----~~~~V~~~~g~---~~~ad~-VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGG----RATAVHLADGE---RLDADA-VVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCC----EEEEEEECCCC---EEECCE-EEECCcHHHHHHHhc
Confidence 33344567999999999999998876 88898765443 578986 999988765555544
No 222
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.12 E-value=4.5e-06 Score=95.07 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=37.3
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcH
Q psy8892 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSP 917 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp 917 (1183)
...+|++|+ +++|++|+.++ +++.||....+. .++| +.||+|+|.|...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~---~~~a-~~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGE---EIEA-DAVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSE---EEEE-CEEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEecC--CeEEEEEeCCCC---EEec-CEEEEecccccCc
Confidence 345899996 68999999988 899999886432 6888 7899999995433
No 223
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.11 E-value=3.4e-05 Score=86.91 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred hhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHc---CCCCccchhhcC
Q psy8892 859 RPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLS---GVGPRPHLEELN 935 (1183)
Q Consensus 859 ~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~S---GIG~~~~l~~~g 935 (1183)
....+..|++++.+|+|+.|.+++ +.+.+|...++. +|.+ +.||||-|--+.-.+-++. |+. -.-....
T Consensus 180 ~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~---~i~~-~~vvlA~Grsg~dw~~~l~~K~Gv~--~~~~p~d 251 (486)
T COG2509 180 REYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGE---EIEA-DYVVLAPGRSGRDWFEMLHKKLGVK--MRAKPFD 251 (486)
T ss_pred HHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCc---EEec-CEEEEccCcchHHHHHHHHHhcCcc--cccCCee
Confidence 334567899999999999999987 567888776654 7889 7899999988877766554 443 3334677
Q ss_pred CCccccCC--CCcccc
Q psy8892 936 IPVIQDLK--VGYNMQ 949 (1183)
Q Consensus 936 i~v~~dlp--VG~nl~ 949 (1183)
|-|+++.| |-.-+.
T Consensus 252 IGVRvE~p~~vmd~~~ 267 (486)
T COG2509 252 IGVRVEHPQSVMDPHT 267 (486)
T ss_pred EEEEEecchHhhCccc
Confidence 77888877 544433
No 224
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.09 E-value=1e-05 Score=98.75 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=42.2
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC--CeEEEEEeCcEEEEcCCCCCChH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN--KQRHTVRARKEVILSAGALNSPQ 344 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~--g~~~~i~A~k~VILAAGai~sp~ 344 (1183)
|....++.|.+|++++.|++|+.+++ +++||.+.++ ++...+.|+. ||+++....+.+
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~~~~~~~~~~~~ad~-VI~~~~~~~~~~ 297 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTKGG----RAGWVVVVDSRKQEDLNVKADD-VVANLPPQSLLE 297 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEeCC----eEEEEEEecCCCCceEEEECCE-EEECCCHHHHHH
Confidence 33344557899999999999999887 8889887654 2224688985 888888644444
No 225
>PRK07208 hypothetical protein; Provisional
Probab=98.08 E-value=3.8e-05 Score=93.45 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=35.6
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
|+...|+||||+|++||++|++|++ .|++|+|||+.+..+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 3567899999999999999999999 599999999987654
No 226
>KOG2665|consensus
Probab=98.08 E-value=3e-05 Score=82.35 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCcceeecCCCCCchHHHHHHHHHHHcCCCCCCC-C-------CCCCcceeeeecccCCCc-ccchhhhhhhcccCCCCe
Q psy8892 221 VGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDP-S-------EPNAIGFSYVLANTGNGE-RYSASRAFLRPIRKRPNL 291 (1183)
Q Consensus 221 ~~g~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~-------~~~~~g~~~~~~~~~~g~-r~s~~~~~l~~~~~~~g~ 291 (1183)
..|.+-+......-+..+.+.....+.|++...+ . .+.|.|... ..+...|. .|....-.+..-.+..|.
T Consensus 133 k~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkA-l~sPhtGIvD~~~v~ls~~edF~~~gg 211 (453)
T KOG2665|consen 133 KTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKA-LLSPHTGIVDWGSVTLSFGEDFDFMGG 211 (453)
T ss_pred hcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhh-hcCCCcceeehHHHHHHHHHHHHHhcc
Confidence 4566777766666777788888777777762111 1 111222111 11112221 122222112222345578
Q ss_pred EEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHHhCCCC
Q psy8892 292 KVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLMLSGIGP 353 (1183)
Q Consensus 292 ~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~SGig~ 353 (1183)
.+.+|-++.++...+... --.-+. ..+++..+++.+ .+++++++.|-++-..||...
T Consensus 212 ~i~~n~~l~g~~~n~~~~--~~Ypiv-v~ngk~ee~r~~--~~vtc~gl~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 212 RIYTNFRLQGIAQNKEAT--FSYPIV-VLNGKGEEKRTK--NVVTCAGLQSDRCAALSGCEL 268 (453)
T ss_pred cccccceeccchhccCCC--CCCceE-EecCccceeEEe--EEEEeccccHhHHHHHhCCCC
Confidence 999999999998766531 001122 233444467774 455555588999999998753
No 227
>KOG2853|consensus
Probab=98.08 E-value=0.00017 Score=77.58 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=33.5
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhc---CCCCEEEEEcCcC
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTE---NSNWTVLLLEAGP 81 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~---~~G~~VlVLE~G~ 81 (1183)
....++||+|||+|..|+++|+-|.+ +.|.+|+|+|+..
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 34567999999999999999999865 4479999999985
No 228
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.07 E-value=1.8e-05 Score=96.49 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=43.1
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC--CeEEEEEeccEEEEccCccCcHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN--RKSYTVKCRKEVILSAGTLNSPQ 918 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~--~~~~~i~A~k~VILAaGa~~tp~ 918 (1183)
|....++.|++|+++++|++|+.++ ++++||.+.++ ++..++.| +.||+++....+.+
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ 297 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLE 297 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHH
Confidence 4445566899999999999999987 68889987653 22246888 66999888654444
No 229
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.06 E-value=7.2e-06 Score=96.67 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=28.7
Q ss_pred EEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 51 IVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 51 IVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||||+|++|+++|..|++. |++|+||||.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCc
Confidence 6999999999999999998 99999999986
No 230
>KOG2820|consensus
Probab=98.05 E-value=3.9e-05 Score=82.78 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=47.2
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLS 923 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~S 923 (1183)
.+...++..|+.++.+..|.-+.+.++.+..++|.++++. .+.| |.+|+++|++ +.++|.-|
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~a-kkiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHA-KKIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeec-ceEEEEecHH-HHhhcCcc
Confidence 3555677889999999999999876654667777776654 4778 6699999987 67777643
No 231
>KOG4254|consensus
Probab=98.04 E-value=2.7e-06 Score=94.49 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=50.4
Q ss_pred hhhhhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHHHH
Q psy8892 278 SRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLML 348 (1183)
Q Consensus 278 ~~~~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LLl~ 348 (1183)
....+.+.+++.|.+|++++.|.+|+.|++ +|.||.+.++. .+++ |.||-.|+-+.|-.-|+.
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd~g----ka~GV~L~dG~---ev~s-k~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLDSG----KAVGVRLADGT---EVRS-KIVVSNATPWDTFEKLLP 328 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheeccCC----eEEEEEecCCc---EEEe-eeeecCCchHHHHHHhCC
Confidence 333455567788999999999999999996 99999998776 5777 468889999888744544
No 232
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=1.2e-05 Score=96.93 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|+.+||+||||+|++|..+|.+|++. |++|+|+|+.+
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 34579999999999999999999998 99999999864
No 233
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.03 E-value=1.6e-05 Score=93.04 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.7
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQL 919 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~l 919 (1183)
.|....++.|++++++++|.++..++ +++++|. ..+++...++| +.||+|+|.+.+.-|
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~-~~~g~~~~i~A-D~VVLAtGrf~s~GL 322 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVW-TRNHGDIPLRA-RHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEE-eeCCceEEEEC-CEEEEeCCCcccCce
Confidence 34455567899999999999998876 5677765 34555668899 679999999976654
No 234
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=3.5e-05 Score=94.85 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=47.3
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe--eCCeEEEEEeccEEEEccCccCc
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS--KNRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~--~~~~~~~i~A~k~VILAaGa~~t 916 (1183)
.|...+.+.|++|++++.+++|+.+++ ++|+||.+. .+++.+.|+| |.||||||++..
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 344445578999999999999998643 799999885 3567778999 789999999984
No 235
>PRK07208 hypothetical protein; Provisional
Probab=98.03 E-value=4.3e-05 Score=93.00 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=35.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
|++..||||||||++|+++|++|+++ |++|+|+|+.+...
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 45678999999999999999999998 99999999987543
No 236
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.02 E-value=2.1e-05 Score=88.99 Aligned_cols=33 Identities=45% Similarity=0.765 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||+|||+|++|+++|+.|++. |.+|+|||+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999998 99999999986
No 237
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.01 E-value=2.4e-05 Score=92.12 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
.+||+|||+|++|+++|..|+++ |.+|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 57999999999999999999999 9999999997
No 238
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.01 E-value=2.9e-05 Score=92.56 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=34.7
Q ss_pred ccccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 652 KIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 652 ~~~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++-..+||+||||+|+||+++|..|++ .|++|+|||+..
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 343567999999999999999999999 699999999974
No 239
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.99 E-value=6.5e-05 Score=88.91 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
...+||+|||+|++|+++|+.|+++ |.+|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 4579999999999999999999998 99999999986
No 240
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=2.3e-05 Score=94.81 Aligned_cols=35 Identities=40% Similarity=0.601 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 469999999999999999999998 99999999874
No 241
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=0.00012 Score=84.76 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=48.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHc
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLS 923 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~S 923 (1183)
|...+++.|++++.+++|+++..++ +++++|.+..+ +..++.| +.||||+|+|.|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g-~~~~l~A-D~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNH-RDIPLRA-DHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCC-ccceEEC-CEEEEccCCCcCHHHHhhc
Confidence 4445567899999999999999887 68888776443 2457899 5699999999888886543
No 242
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.97 E-value=5e-05 Score=89.87 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=33.6
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
...+|++|||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCC
Confidence 457899999999999999999999 699999999986
No 243
>KOG2665|consensus
Probab=97.97 E-value=4.8e-05 Score=80.79 Aligned_cols=212 Identities=19% Similarity=0.194 Sum_probs=117.4
Q ss_pred ccccccceEEeeCCCchHHHHHHHHhc-CCCCeEEEEcCCCCCCCCcccccccccccCCCCccCccccCccccccCCCCC
Q psy8892 652 KIFEKEYDFIVIGAGSGGSVIANRLTE-NPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQ 730 (1183)
Q Consensus 652 ~~~~~~~D~VVIGsG~aG~~~A~~Lae-~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 730 (1183)
+...+.||.||||+|+.|+..|.+|.- +++++|+||||...... ++ .+
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~--------hq----------------------Sg- 91 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV--------HQ----------------------SG- 91 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce--------ee----------------------cc-
Confidence 444678999999999999999999976 47999999999864210 00 00
Q ss_pred eeeccccceecCcccccceeEeeCCccccchhhccCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCC
Q psy8892 731 TCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWR 810 (1183)
Q Consensus 731 ~~~~~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~ 810 (1183)
--+..+.+++|..+.. ++. .+...| .+-+..|+.+-+ .-+...|-+-+.....+
T Consensus 92 ----------hNSgViHaGIYY~P~S--LKA--klCV~G--~~LlY~yc~e~~----------IpyKk~GKLIVAt~~~E 145 (453)
T KOG2665|consen 92 ----------HNSGVIHAGIYYKPGS--LKA--KLCVEG--RELLYEYCDEKK----------IPYKKTGKLIVATESEE 145 (453)
T ss_pred ----------cccceeeeeeeeCCcc--cch--hhhhcc--HHHHHHHhhhcC----------CChhhcceEEEEeChhh
Confidence 0122344444444321 111 111111 112334444311 11335677777766677
Q ss_pred ChHHHHHHHHHHHCCCCCCCC--CCCCce-----eeeecccc-cCCcc-ch-HHHhhhhhhhcCCCcEEEcCcEEEEEEE
Q psy8892 811 TPLSAAFLEAGSELGYDQVDH--CENPIG-----FSYVLANK-IRGAR-QS-ASKAFIRPIRKRHNLKVAKEARVTKILI 880 (1183)
Q Consensus 811 ~~~~~~~~~~~~~~G~~~~d~--~~~~~g-----~~~~~~~~-~~g~r-~~-~~~~~L~~~~~~~g~~i~~~t~V~~I~~ 880 (1183)
.+..+.+++.....|++-..+ +.+..- .+.....+ +.|.- +. ....|-.+ .+..|.++.+|-++.++..
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed-F~~~gg~i~~n~~l~g~~~ 224 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED-FDFMGGRIYTNFRLQGIAQ 224 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH-HHHhcccccccceeccchh
Confidence 777888888888888765322 111111 01111111 12211 11 11112222 4567899999999999987
Q ss_pred cCCCCeEEEE-EEeeCCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 881 DPITKRTYGV-EFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 881 ~~~~gra~GV-~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
+++. . .+- .+..+++..+++. + -+++|+++.+.++-.+||-
T Consensus 225 n~~~-~-~~Ypivv~ngk~ee~r~-~-~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 225 NKEA-T-FSYPIVVLNGKGEEKRT-K-NVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred ccCC-C-CCCceEEecCccceeEE-e-EEEEeccccHhHHHHHhCC
Confidence 6531 1 121 1123444557777 5 4556666999999999986
No 244
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.97 E-value=1e-05 Score=94.32 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
+|||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccc
Confidence 58999999999999999999999 999999999863
No 245
>PRK07045 putative monooxygenase; Reviewed
Probab=97.96 E-value=3.5e-05 Score=91.04 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=33.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+.++||+|||+|++|+++|..|+++ |++|+|+||.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~ 38 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAA 38 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCC
Confidence 3568999999999999999999998 99999999997
No 246
>PRK08244 hypothetical protein; Provisional
Probab=97.96 E-value=3.8e-05 Score=93.63 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 48999999999999999999998 99999999986
No 247
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.96 E-value=5.4e-05 Score=85.67 Aligned_cols=34 Identities=44% Similarity=0.686 Sum_probs=32.0
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
||++|||+|++|+++|..|++ .|.+|+||||+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999999 5999999999963
No 248
>PRK06847 hypothetical protein; Provisional
Probab=97.95 E-value=4e-05 Score=90.17 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=33.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|.+..||+|||+|++|+++|..|++. |.+|+|+|+.+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 34567999999999999999999998 99999999975
No 249
>PRK11445 putative oxidoreductase; Provisional
Probab=97.94 E-value=0.00014 Score=84.40 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=30.5
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
||++|||+|+||+++|..|++ . ++|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCC
Confidence 799999999999999999999 6 9999999986
No 250
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.94 E-value=8.6e-05 Score=89.26 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||||||+|++|+.+|..||+. |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999874
No 251
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.93 E-value=4.7e-05 Score=89.96 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+||+|||+|++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 57999999999999999999998 99999999986
No 252
>PLN02985 squalene monooxygenase
Probab=97.93 E-value=0.00012 Score=88.89 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=33.8
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+..+|+||||+|++|+++|..|++ .|.+|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence 3567899999999999999999999 699999999974
No 253
>PLN02697 lycopene epsilon cyclase
Probab=97.90 E-value=5.1e-05 Score=91.42 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=32.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
+..|||||||+|++|+++|..|++. |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 3469999999999999999999998 9999999986
No 254
>KOG2853|consensus
Probab=97.89 E-value=0.00024 Score=76.37 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=32.7
Q ss_pred ccceEEeeCCCchHHHHHHHHhc---CCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTE---NPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae---~~G~~VlvLE~G~~ 692 (1183)
.++|+||||+|..|+++|+-|-| +.|++|+|+|+...
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 47899999999999999999976 35799999999864
No 255
>PRK09126 hypothetical protein; Provisional
Probab=97.89 E-value=0.00013 Score=86.44 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+|||||||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 58999999999999999999998 99999999996
No 256
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=4.6e-05 Score=92.02 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=33.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+.+||+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 457999999999999999999999 699999999874
No 257
>PRK07045 putative monooxygenase; Reviewed
Probab=97.87 E-value=0.00013 Score=86.29 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=34.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+.++|++|||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCc
Confidence 357899999999999999999999 6999999999963
No 258
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.87 E-value=6.9e-05 Score=88.60 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=32.3
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 5799999999999999999999 699999999996
No 259
>PRK11445 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00017 Score=83.78 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||+|||+|++|+++|..|+++ .+|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 8999999999999999999985 8999999986
No 260
>PRK06184 hypothetical protein; Provisional
Probab=97.86 E-value=7.4e-05 Score=91.31 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 368999999999999999999998 99999999986
No 261
>PRK06126 hypothetical protein; Provisional
Probab=97.86 E-value=0.00012 Score=90.48 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+.++||+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 4579999999999999999999998 99999999875
No 262
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.86 E-value=8.9e-05 Score=87.49 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=30.9
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
||+||||+|+||+++|..|++ .|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 799999999999999999999 69999999997
No 263
>PLN02463 lycopene beta cyclase
Probab=97.85 E-value=6.4e-05 Score=89.17 Aligned_cols=36 Identities=31% Similarity=0.595 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
...|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 3469999999999999999999998 99999999875
No 264
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00013 Score=86.72 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCE-EEEEcCcCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWT-VLLLEAGPE 82 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~-VlVLE~G~~ 82 (1183)
..+.+||+|||+|.+|+++|++|.++ |.. ++|+||...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCC
Confidence 45679999999999999999999998 887 999999963
No 265
>PRK08244 hypothetical protein; Provisional
Probab=97.84 E-value=0.00011 Score=89.67 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=32.7
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
++|++|||+|++|+++|..|++ .|++|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 5899999999999999999999 6999999999863
No 266
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.82 E-value=0.00011 Score=88.22 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=31.2
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
||+||||+|++|+.+|..+++ .|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 799999999999999999999 599999999974
No 267
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.81 E-value=0.00011 Score=88.73 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=38.5
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCC--eEEEEEeccEEEEccCc
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNR--KSYTVKCRKEVILSAGT 913 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~--~~~~i~A~k~VILAaGa 913 (1183)
..++.|.+|+++++|++|..+++ ++++||++.+++ +.+++.| +.||+|+..
T Consensus 222 ~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 222 YITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred HHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 34456899999999999987653 679999986532 2236888 679999874
No 268
>PRK06834 hypothetical protein; Provisional
Probab=97.81 E-value=0.00011 Score=88.85 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||||||+|++|+++|+.|++. |.+|+|||+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 58999999999999999999998 99999999986
No 269
>PRK07190 hypothetical protein; Provisional
Probab=97.80 E-value=0.00011 Score=88.63 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+.+||||||+|++|+++|..|++. |.+|+||||.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 458999999999999999999998 99999999986
No 270
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.80 E-value=9.4e-05 Score=87.32 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=31.1
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+|+||||+|+||+++|..|++ .|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 599999999999999999999 699999999974
No 271
>KOG1298|consensus
Probab=97.80 E-value=1.9e-05 Score=86.22 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=40.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee-CCeEEEEEeccEEEEccCccCc
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK-NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~-~~~~~~i~A~k~VILAaGa~~t 916 (1183)
++..+|+++.. ..|..|+.|+ +.+.||++.+ .+++.+..| .-.|+|-|.|..
T Consensus 157 a~slpNV~~ee-GtV~sLlee~--gvvkGV~yk~k~gee~~~~A-pLTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEE-GTVKSLLEEE--GVVKGVTYKNKEGEEVEAFA-PLTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEee-eeHHHHHhcc--CeEEeEEEecCCCceEEEec-ceEEEecchhHH
Confidence 34568999864 4588888777 7999999984 567788889 679999998843
No 272
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.79 E-value=7.9e-05 Score=90.24 Aligned_cols=37 Identities=41% Similarity=0.715 Sum_probs=33.6
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
|...||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 3458999999999999999999999 699999999873
No 273
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.79 E-value=5.5e-05 Score=90.87 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=31.6
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+||+||||+|+||+.+|.+|++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6999999999999999999999 69999999996
No 274
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.79 E-value=0.00046 Score=85.05 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.8
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
...+|++|||+|++|+++|..|++ .|++|+||||.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 347899999999999999999999 6999999999963
No 275
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.78 E-value=0.0001 Score=86.48 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999998 99999999975
No 276
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.78 E-value=5e-05 Score=89.34 Aligned_cols=36 Identities=39% Similarity=0.641 Sum_probs=33.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..+||+||||+|++|-++|.+||+. |++|+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 4689999999999999999999998 88899999984
No 277
>PLN02697 lycopene epsilon cyclase
Probab=97.78 E-value=0.00013 Score=87.98 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.6
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
..||+||||+|+||+++|..|++ .|++|+|||++
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCc
Confidence 35899999999999999999999 69999999986
No 278
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.77 E-value=0.00017 Score=88.83 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=47.7
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCc
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNS 916 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~t 916 (1183)
..|...+++.|++|++++.|++|+.++ |+|+||...+ +++...|+| |.||||||+++.
T Consensus 123 ~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 123 HTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 344455567899999999999999875 7999998853 577778999 789999999974
No 279
>KOG2852|consensus
Probab=97.77 E-value=2.2e-05 Score=82.52 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=45.1
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeC-CeEEEEEeCcEEEEcCCCCCChHHHHHhCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKN-KQRHTVRARKEVILSAGALNSPQLLMLSGI 351 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~-g~~~~i~A~k~VILAAGai~sp~LLl~SGi 351 (1183)
++..+.++.|++++.+ .|.+|..+.. |+.+|..... +..+...+.+ +|||+|.| |++||..-+|
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~dEk~----r~n~v~~ae~~~ti~~~d~~~-ivvsaGPW-Tskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVSDEKH----RINSVPKAEAEDTIIKADVHK-IVVSAGPW-TSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEeecccc----cccccchhhhcCceEEeeeeE-EEEecCCC-chhhcccccc
Confidence 4556677888999987 5667765555 7888766532 2234566765 99999986 8899887655
No 280
>PRK07233 hypothetical protein; Provisional
Probab=97.77 E-value=0.00011 Score=88.24 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.6
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESL 695 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~ 695 (1183)
++||||+|++||++|+.|++ .|++|+|||+.+..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCCC
Confidence 48999999999999999999 5999999999987643
No 281
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.77 E-value=0.00018 Score=88.06 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=50.6
Q ss_pred hhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 860 PIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 860 ~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
..+.+.|++|+++++|++|..++ +++.||++.+ +++..+|+| +.||+|||++ +.+|+...|+
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 34567899999999999999876 7899998864 455678999 6799999965 7888887776
No 282
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.76 E-value=0.0002 Score=84.44 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999998 99999999986
No 283
>PRK06847 hypothetical protein; Provisional
Probab=97.76 E-value=0.00016 Score=84.99 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
....|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~ 37 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDP 37 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 446799999999999999999999 699999999985
No 284
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.75 E-value=2.6e-05 Score=66.22 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.7
Q ss_pred EECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 52 VVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 52 VVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
|||||++|+++|++|+++ |++|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence 899999999999999999 999999999974
No 285
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.75 E-value=0.00026 Score=87.27 Aligned_cols=36 Identities=39% Similarity=0.559 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 4569999999999999999999998 99999999986
No 286
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.73 E-value=0.00037 Score=78.74 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=41.4
Q ss_pred cccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCCh
Q psy8892 284 PIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSP 343 (1183)
Q Consensus 284 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp 343 (1183)
...+..|++|+.+|+|+.|+++++ .+.+|...++. +|.++. ||||-|--+.-
T Consensus 181 ~~l~~~G~ei~f~t~VeDi~~~~~----~~~~v~~~~g~---~i~~~~-vvlA~Grsg~d 232 (486)
T COG2509 181 EYLESLGGEIRFNTEVEDIEIEDN----EVLGVKLTKGE---EIEADY-VVLAPGRSGRD 232 (486)
T ss_pred HHHHhcCcEEEeeeEEEEEEecCC----ceEEEEccCCc---EEecCE-EEEccCcchHH
Confidence 344567899999999999999987 77888776654 689985 99999965443
No 287
>PRK06184 hypothetical protein; Provisional
Probab=97.73 E-value=0.0002 Score=87.48 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=33.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
.++|++|||+|++|+++|..|++ .|++|+||||.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 46899999999999999999999 6999999999863
No 288
>PRK06834 hypothetical protein; Provisional
Probab=97.73 E-value=0.00026 Score=85.72 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=32.3
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++|+||||+|++|+++|+.|++ .|++|+||||.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 5899999999999999999999 699999999986
No 289
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.72 E-value=0.00018 Score=88.17 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.5
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHHHHHhCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQLLMLSGI 351 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~LLl~SGi 351 (1183)
.+.+.|++|+++++|++|..+++ ++.||++.+ +++..+|+|+. ||+|||++ +..|+...|+
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~~~~~g~~~~i~a~~-VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG----RVTGVKVEDHKTGEEERIEAQV-VINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC----EEEEEEEEEcCCCcEEEEEcCE-EEECCCcc-hHHHHHhcCC
Confidence 34567999999999999998877 899998865 45566899986 99999986 6777765444
No 290
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.72 E-value=0.00021 Score=84.67 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
....||+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 4568999999999999999999998 99999999986
No 291
>PRK06126 hypothetical protein; Provisional
Probab=97.71 E-value=0.00036 Score=86.32 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=33.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+.++|++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 457899999999999999999999 699999999985
No 292
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.71 E-value=0.00018 Score=84.95 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||||||+|++|+++|+.|++. |++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 899999999999999999988 99999999985
No 293
>KOG2852|consensus
Probab=97.71 E-value=1.4e-05 Score=83.85 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=49.5
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC-CeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN-RKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNI 936 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~-~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi 936 (1183)
+..+.++.|++++.+. |..+..+. +|+.+|-.... +..+...+ ..+|||+|.+ |++||...+| ..|+.+-|
T Consensus 154 ~sea~k~~~V~lv~Gk-v~ev~dEk--~r~n~v~~ae~~~ti~~~d~-~~ivvsaGPW-Tskllp~~rI---sglrihsI 225 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFGK-VKEVSDEK--HRINSVPKAEAEDTIIKADV-HKIVVSAGPW-TSKLLPFTRI---SGLRIHSI 225 (380)
T ss_pred HHHHHhhcCeEEEEee-eEEeeccc--ccccccchhhhcCceEEeee-eEEEEecCCC-chhhcccccc---ceeeeeeE
Confidence 4445567789988774 55665333 68888766522 22334556 5699999975 8999998877 56666666
Q ss_pred Ccccc
Q psy8892 937 PVIQD 941 (1183)
Q Consensus 937 ~v~~d 941 (1183)
....-
T Consensus 226 ~l~~~ 230 (380)
T KOG2852|consen 226 TLSPG 230 (380)
T ss_pred EecCC
Confidence 54433
No 294
>KOG1298|consensus
Probab=97.69 E-value=3.4e-05 Score=84.30 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=34.8
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 43 ~~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..+..+||||||+|.+|+++|+.|+++ |.||+||||.-
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl 78 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDL 78 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccc
Confidence 345679999999999999999999999 99999999974
No 295
>PRK07588 hypothetical protein; Provisional
Probab=97.69 E-value=0.00034 Score=82.72 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 899999999999999999998 99999999985
No 296
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.69 E-value=0.00037 Score=82.15 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=31.6
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
.+|++|||+|++|+++|..|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5799999999999999999999 69999999998
No 297
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.67 E-value=0.00056 Score=81.32 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.1
Q ss_pred ceEEeeCCCchHHHHHHHHhcCC-CCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENP-NWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~-G~~VlvLE~G~ 691 (1183)
||++|||+|++|+++|..|++.. |++|+|||+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 79999999999999999999941 49999999986
No 298
>PRK07236 hypothetical protein; Provisional
Probab=97.67 E-value=0.00048 Score=81.29 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..||||||+|++|+++|..|++. |.+|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 58999999999999999999998 99999999985
No 299
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.67 E-value=0.0003 Score=86.98 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..++||+|||+|++|+++|+.|++. |.+|+||||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 4578999999999999999999998 99999999986
No 300
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.64 E-value=0.00025 Score=83.59 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=32.2
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4799999999999999999999 699999999996
No 301
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=7.8e-05 Score=85.77 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.++|||||||+|.||+-||...|+- |.+++||=-..
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~ 37 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNL 37 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCC
Confidence 3569999999999999999999998 99999987654
No 302
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.64 E-value=4.7e-05 Score=64.61 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.9
Q ss_pred eeCCCchHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy8892 662 VIGAGSGGSVIANRLTENPNWTVLLLEAGREE 693 (1183)
Q Consensus 662 VIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~ 693 (1183)
|||+|++|+++|++|++ .|++|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCccc
Confidence 89999999999999999 59999999999754
No 303
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.63 E-value=0.00049 Score=81.12 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=31.2
Q ss_pred eEEeeCCCchHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPN-WTVLLLEAGRE 692 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G-~~VlvLE~G~~ 692 (1183)
|++|||+|++|+++|..|++ .| ++|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCc
Confidence 89999999999999999999 69 99999999964
No 304
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.62 E-value=0.00019 Score=86.60 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=43.1
Q ss_pred hcCCCcEEEcCcEEEEEEEcC--CCC-eEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 862 RKRHNLKVAKEARVTKILIDP--ITK-RTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~--~~g-ra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
.++.|++|+++++|++|..++ ++. ++++|++.+++...++.| +.||+|+....+.+||
T Consensus 229 L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~a-D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 229 IEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKA-DAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEEC-CEEEECCChHHHHhhC
Confidence 345899999999999999864 212 488888854322235788 6799999988777766
No 305
>KOG2311|consensus
Probab=97.61 E-value=0.00014 Score=81.53 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=39.5
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
..+|++|+.+..+.=|+.+++.+.+++.||...++. .|.|+. |||.+|.|-+.+|
T Consensus 136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt---~v~a~~-VilTTGTFL~~~I 190 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGT---VVYAES-VILTTGTFLRGQI 190 (679)
T ss_pred cCCcchhhhhhhhheeeccCCCCceEEEEEEEecCc---Eeccce-EEEeeccceeeEE
Confidence 467899987755444444444445579999887765 688986 9999999966654
No 306
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.61 E-value=0.00046 Score=81.80 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.1
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
....|++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~ 37 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAA 37 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCc
Confidence 346799999999999999999999 699999999986
No 307
>PRK07190 hypothetical protein; Provisional
Probab=97.61 E-value=0.00044 Score=83.57 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=33.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
..+|+||||+|++|+++|+.|++ .|.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence 45899999999999999999999 6999999999963
No 308
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.59 E-value=0.00023 Score=85.80 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcc-eEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHHH
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLK-RATGVEFFKNKQRHTVRARKEVILSAGALNSPQLL 346 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~-rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~LL 346 (1183)
.+++.|.+|+++++|++|..++++++. ++++|++.+++....+.++. ||+|+......+||
T Consensus 228 ~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~-VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 228 YIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADA-YVAACDVPGIKRLL 289 (474)
T ss_pred HHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCE-EEECCChHHHHhhC
Confidence 334578999999999999987521111 38888875442223588885 99999987766665
No 309
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=0.00032 Score=86.47 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=45.2
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
|.....+.|++|+.++.+++|+.++++ +|+||.+.+ +++...|.|+ .||||+|++..
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG---AVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC---eEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 333445679999999999999986433 999998854 6667788896 59999999874
No 310
>PTZ00058 glutathione reductase; Provisional
Probab=97.56 E-value=0.00011 Score=89.47 Aligned_cols=35 Identities=43% Similarity=0.623 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+||+||||+|++|.++|.+|++. |++|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 579999999999999999999998 99999999863
No 311
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00041 Score=82.53 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCe-EEEEcCCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWT-VLLLEAGREE 693 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~-VlvLE~G~~~ 693 (1183)
.+.+|++|||+|.+|+.+|++|.+ .|.. ++|+||....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDV 44 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCc
Confidence 457899999999999999999999 6888 9999999643
No 312
>PRK07538 hypothetical protein; Provisional
Probab=97.56 E-value=0.00029 Score=83.95 Aligned_cols=32 Identities=31% Similarity=0.603 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 899999999999999999998 99999999985
No 313
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.51 E-value=9.4e-05 Score=88.26 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..+|||||||+|++|+++|+.||++ |++|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 3469999999999999999999998 99999999974
No 314
>KOG1399|consensus
Probab=97.49 E-value=0.00036 Score=81.86 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
.-+|+|||||++||++|+.|.+. |+.|+|+||...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCC
Confidence 45899999999999999999998 999999999973
No 315
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.00017 Score=83.12 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=37.6
Q ss_pred cCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcH
Q psy8892 863 KRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSP 917 (1183)
Q Consensus 863 ~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp 917 (1183)
..+|+.|+. ..|++|+++++ .+|.||....+. .+.| |.|||++|.|-.-
T Consensus 112 ~~~NL~l~q-~~v~dli~e~~-~~v~GV~t~~G~---~~~a-~aVVlTTGTFL~G 160 (621)
T COG0445 112 NQPNLHLLQ-GEVEDLIVEEG-QRVVGVVTADGP---EFHA-KAVVLTTGTFLRG 160 (621)
T ss_pred cCCCceehH-hhhHHHhhcCC-CeEEEEEeCCCC---eeec-CEEEEeecccccc
Confidence 467999875 45788888762 479999887654 6888 7899999998433
No 316
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.48 E-value=0.0018 Score=80.18 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=33.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.++|++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 46899999999999999999999 699999999996
No 317
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.47 E-value=0.00094 Score=72.51 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
.-++.|||||++|+++|+.|++. .+|++.|++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~r 41 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRR 41 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEecccc
Confidence 35899999999999999999986 79999999975
No 318
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.47 E-value=0.0008 Score=73.05 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=41.3
Q ss_pred HHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEee-CCeEEEEEeccEEEEccCccCcHHH
Q psy8892 854 SKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSK-NRKSYTVKCRKEVILSAGTLNSPQL 919 (1183)
Q Consensus 854 ~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~-~~~~~~i~A~k~VILAaGa~~tp~l 919 (1183)
..+|+.++++.-..+|.+++.|.+|..-.+ ||++.. +|+...+.+ ||+|+-+-+.-.+
T Consensus 219 S~~yvq~laa~~~~~i~t~~~V~~l~rlPd-----Gv~l~~~~G~s~rFD~---vViAth~dqAl~m 277 (447)
T COG2907 219 SRAYVQRLAADIRGRIETRTPVCRLRRLPD-----GVVLVNADGESRRFDA---VVIATHPDQALAL 277 (447)
T ss_pred hHHHHHHHhccccceeecCCceeeeeeCCC-----ceEEecCCCCccccce---eeeecChHHHHHh
Confidence 455777766665667999999999987664 566664 466666655 9999987754433
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.47 E-value=0.0005 Score=84.15 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=43.7
Q ss_pred CCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHHc
Q psy8892 864 RHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLS 923 (1183)
Q Consensus 864 ~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~S 923 (1183)
..|+++++++.|++|.-++ +++++|++.+ ++++.++.+ +.|+++.|..-...+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~-D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLEL-EGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEc-CEEEEeECCccCchHHhhh
Confidence 4689999999999997654 6788888864 455567888 6799999987767766543
No 320
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.001 Score=71.75 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=44.2
Q ss_pred cCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 286 RKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 286 ~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
.++.|..++.+-+|.+..+.++ +|+.|.++ +.....++|+. +|||+|+|-|.-|
T Consensus 268 f~~~Gg~~m~Gd~V~~a~~~~~----~v~~i~tr-n~~diP~~a~~-~VLAsGsffskGL 321 (421)
T COG3075 268 FEQLGGLWMPGDEVKKATCKGG----RVTEIYTR-NHADIPLRADF-YVLASGSFFSKGL 321 (421)
T ss_pred HHHcCceEecCCceeeeeeeCC----eEEEEEec-ccccCCCChhH-eeeeccccccccc
Confidence 3467889999999999999988 99999776 55556789985 9999999976543
No 321
>PLN02612 phytoene desaturase
Probab=97.45 E-value=0.00084 Score=82.75 Aligned_cols=242 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCcccccc-cccccCCCCccCccccCccccc---cCCCCCe
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLF-VSYMVDTDFNWGYKTEKDERFC---RGMSDQT 731 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p~~-~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~ 731 (1183)
...+++|||+|.+|+++|++|++ .|++|+|+|+....++....-.. .+........|.+...+..... .++...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~- 169 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR- 169 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc-
Q ss_pred eecccccee----cCcccccceeEeeCCccccc-hhhcc-CCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccc
Q psy8892 732 CNWPRGKAM----GGTSVINYMVYSRGVPQDFD-NWEAL-GNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVE 805 (1183)
Q Consensus 732 ~~~~~G~~l----GGsS~~n~~~~~r~~~~d~~-~w~~~-g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~ 805 (1183)
..|..+... +.........+....+..+. .|..+ ....+++.+.............. .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~----------------~ 233 (567)
T PLN02612 170 LQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVG----------------G 233 (567)
T ss_pred ceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcc----------------c
Q ss_pred cCCCCChHHHHHHHHHHHCCCCC-----------CCC-CCCC----------------ceeeeecccccCCccchHHHhh
Q psy8892 806 QTSWRTPLSAAFLEAGSELGYDQ-----------VDH-CENP----------------IGFSYVLANKIRGARQSASKAF 857 (1183)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~G~~~-----------~d~-~~~~----------------~g~~~~~~~~~~g~r~~~~~~~ 857 (1183)
.+.........+.+.+++.|.+. .-. .... ............|.-......-
T Consensus 234 ~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~ 313 (567)
T PLN02612 234 QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMP 313 (567)
T ss_pred chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHH
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
|....++.|++|+++++|++|..+++ +++++|++.++. ++.| +.||+|+..-...+||
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~---~~~a-d~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGS---VVEG-DVYVSATPVDILKLLL 371 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCc---EEEC-CEEEECCCHHHHHHhC
No 322
>PRK07538 hypothetical protein; Provisional
Probab=97.45 E-value=0.00078 Score=80.25 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=30.6
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCC
Confidence 89999999999999999999 699999999985
No 323
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.45 E-value=9.3e-05 Score=87.34 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
|||||||+|++|+++|+.||+. |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999997
No 324
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.45 E-value=0.00016 Score=87.56 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
-|+|||||++|+++|..|.+. |..|+++||.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCC
Confidence 489999999999999999998 999999999874
No 325
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.43 E-value=0.0015 Score=76.68 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=31.3
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 699999999999999999999 699999999985
No 326
>PRK06116 glutathione reductase; Validated
Probab=97.42 E-value=0.00012 Score=88.18 Aligned_cols=37 Identities=43% Similarity=0.669 Sum_probs=33.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|+.+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~~ 37 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAKR 37 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 34579999999999999999999998 99999999874
No 327
>PTZ00367 squalene epoxidase; Provisional
Probab=97.40 E-value=0.00021 Score=87.17 Aligned_cols=35 Identities=37% Similarity=0.622 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+|||||||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 469999999999999999999998 99999999975
No 328
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00014 Score=78.24 Aligned_cols=35 Identities=29% Similarity=0.561 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
.||+||||||.+|+++|..|++. |++||||||-+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNH 35 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEecccc
Confidence 38999999999999999999988 999999999765
No 329
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.39 E-value=0.00053 Score=83.15 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=28.6
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
-++|||+|++|+++|..|.| .|+.|+++||.+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCCC
Confidence 48999999999999999999 599999999997543
No 330
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.38 E-value=0.00087 Score=81.93 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCCcEEEcCcEEEEEEEcCCCCeEEEEEEee--CCeEEEEEeccEEEEccCccCcHHHHHH
Q psy8892 864 RHNLKVAKEARVTKILIDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLML 922 (1183)
Q Consensus 864 ~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~--~~~~~~i~A~k~VILAaGa~~tp~lL~~ 922 (1183)
+.|+++++++.|+++.-++ +++++|++.+ .++..++.+ +.||+|.|..-+..+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~-D~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDL-DGVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEc-CEEEEEeCCcCCchHHhh
Confidence 3689999999999997554 6788888864 244567888 679999998776776643
No 331
>KOG2311|consensus
Probab=97.38 E-value=0.00035 Score=78.42 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.4
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+..||+||||+|.||+-+|...|+ .|.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-cCCceEEeecc
Confidence 457999999999999999999999 69999988655
No 332
>PRK06370 mercuric reductase; Validated
Probab=97.34 E-value=0.00017 Score=87.21 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=34.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|..+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 55679999999999999999999998 99999999874
No 333
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.34 E-value=0.00056 Score=82.62 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999998 99999999874
No 334
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.34 E-value=0.00043 Score=82.74 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=38.6
Q ss_pred hHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccC
Q psy8892 852 SASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAG 912 (1183)
Q Consensus 852 ~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaG 912 (1183)
.....+|...+.+.|++++.++ |.++..+++ +.+++|+..++ .+|+| +-||=|+|
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g---~~i~a-d~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDG---RTIEA-DFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTS---EEEEE-SEEEE-SG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCC---CEEEE-eEEEECCC
Confidence 3456678777777899999875 888888764 78999988653 27899 76777777
No 335
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.34 E-value=0.00087 Score=82.64 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=45.9
Q ss_pred hhhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCC
Q psy8892 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNS 342 (1183)
Q Consensus 281 ~l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~s 342 (1183)
.|...+.+.|++|+.++.|++|+.+++ +|+||...+ +++...|.|+ .||||+|++..
T Consensus 124 ~L~~~~~~~gi~i~~~~~~~~Li~~~g----~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 124 TLYQQNLKADTSFFNEYFALDLLMEDG----ECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHHhCCCEEEeccEEEEEEeeCC----EEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 344444567999999999999998765 999998854 5667788996 59999999864
No 336
>PLN02487 zeta-carotene desaturase
Probab=97.34 E-value=0.00062 Score=82.97 Aligned_cols=262 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCCCccccc-ccccccCCCCccCccccCccccccCCCCCeeecc
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPL-FVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWP 735 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~~~~~p~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 735 (1183)
..+++|||+|++|+++|+.|++ .|++|+|+|+.+..++...... ..+........|.+...+........-+-.-...
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Q ss_pred ccceecCccccccee----EeeCCccccchhhcc-CCCCCCccchHHH------HHHhhcccCCC--CCCCCCCCCCCcc
Q psy8892 736 RGKAMGGTSVINYMV----YSRGVPQDFDNWEAL-GNPGWSYRDVLPY------FKKSEDISVSR--LKGSPYHGIGGYL 802 (1183)
Q Consensus 736 ~G~~lGGsS~~n~~~----~~r~~~~d~~~w~~~-g~~gw~~~~l~py------~~k~e~~~~~~--~~~~~~~~~~G~~ 802 (1183)
....+-.-...++.. +..+.+.-+..|..+ ....+++.+-... .........+. ..........-.-
T Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~ 233 (569)
T PLN02487 154 VKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFS 233 (569)
T ss_pred ccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHH
Q ss_pred ccccCCCCCh-HHHHHHHHH--HHCCCCCCCC-CCCCceeeee--------cccccCCccchHHHhhhhhhhcCCCcEEE
Q psy8892 803 KVEQTSWRTP-LSAAFLEAG--SELGYDQVDH-CENPIGFSYV--------LANKIRGARQSASKAFIRPIRKRHNLKVA 870 (1183)
Q Consensus 803 ~~~~~~~~~~-~~~~~~~~~--~~~G~~~~d~-~~~~~g~~~~--------~~~~~~g~r~~~~~~~L~~~~~~~g~~i~ 870 (1183)
.........+ ..+.+.+.. ..++.+..+. .......... ......|.-......-+....++.|++|+
T Consensus 234 ~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~ 313 (569)
T PLN02487 234 DWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFH 313 (569)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEE
Q ss_pred cCcEEEEEEEcCCCCe---EEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 871 KEARVTKILIDPITKR---TYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 871 ~~t~V~~I~~~~~~gr---a~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
+++.|++|..+.++++ ++||++.++++...+.| +.||+|++.....+||
T Consensus 314 l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 314 LRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred eCCceEEEEEecCCCCceeEEEEEEecCCCceEEEC-CEEEECCCHHHHHHhC
No 337
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.33 E-value=0.0012 Score=77.26 Aligned_cols=33 Identities=39% Similarity=0.762 Sum_probs=30.6
Q ss_pred eEEeeCCCchHHHHHHHH--hcCCCCeEEEEcCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRL--TENPNWTVLLLEAGRE 692 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~L--ae~~G~~VlvLE~G~~ 692 (1183)
|+||||+|+||+++|.+| ++ .|++|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCcc
Confidence 899999999999999999 77 6999999999863
No 338
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.33 E-value=0.0012 Score=78.17 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+|+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 699999999999999999998 99999999975
No 339
>KOG1399|consensus
Probab=97.33 E-value=0.00084 Score=78.80 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=32.8
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREE 693 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~ 693 (1183)
.-+++|||+|++||++|..|.+ .|+.|+|+||.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence 4589999999999999999999 59999999999754
No 340
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.32 E-value=0.00019 Score=84.89 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 569999999999999999999998 99999999975
No 341
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.31 E-value=0.00082 Score=82.25 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=31.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
..||++|||||+||+.+|.+|++ .|++|+|+|+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~~ 243 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAER 243 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecC
Confidence 36899999999999999999999 69999999754
No 342
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.31 E-value=0.00019 Score=86.91 Aligned_cols=37 Identities=38% Similarity=0.682 Sum_probs=34.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|...||+||||||++|+.+|.+|++. |++|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 45689999999999999999999998 99999999874
No 343
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.30 E-value=0.00018 Score=86.28 Aligned_cols=35 Identities=43% Similarity=0.738 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 369999999999999999999998 99999999974
No 344
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.29 E-value=0.00023 Score=84.12 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+.|||||||+|++|+++|+.|+++ |.+|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 3568999999999999999999998 99999999985
No 345
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.28 E-value=0.00022 Score=85.72 Aligned_cols=35 Identities=29% Similarity=0.658 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence 469999999999999999999998 99999999985
No 346
>PRK08013 oxidoreductase; Provisional
Probab=97.26 E-value=0.00024 Score=84.27 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
+|||||||+|++|+++|+.|++. |.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 58999999999999999999998 999999999863
No 347
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.26 E-value=0.00021 Score=84.34 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||||||+|++|+++|+.||++ |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999998 99999999874
No 348
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.25 E-value=0.00037 Score=80.60 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=40.5
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
+...+++.|++++.+++|+.|..+++ ++++|... ++ +++|++ ||+|+|++ ++.|
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~----~~~~v~~~-~g---~~~a~~-vV~a~G~~-~~~l 196 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGE----KVTAIVTP-SG---DVQADQ-VVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCC----EEEEEEcC-CC---EEECCE-EEEcCChh-hhhc
Confidence 33344567999999999999998766 78887642 33 688986 99999986 4443
No 349
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.25 E-value=0.00027 Score=83.58 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
..+||||||+|++|+++|+.|++. |.+|+|||+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 368999999999999999999998 999999999963
No 350
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.24 E-value=0.0012 Score=75.56 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=26.7
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.||+|+||.|++++++|..|.+....+++.||+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 58999999999999999999995458999999986
No 351
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.23 E-value=0.00028 Score=83.85 Aligned_cols=34 Identities=41% Similarity=0.685 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+|||+|||+|++|+++|+.|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999998 99999999986
No 352
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.00031 Score=75.63 Aligned_cols=36 Identities=31% Similarity=0.578 Sum_probs=33.0
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
||++|||||.+|+++|..|++ .|.+||||||.+..+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccCC
Confidence 799999999999999999998 699999999987653
No 353
>PRK06116 glutathione reductase; Validated
Probab=97.20 E-value=0.00024 Score=85.61 Aligned_cols=36 Identities=53% Similarity=0.722 Sum_probs=33.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+.+||+||||+|+||+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 457999999999999999999999 699999999974
No 354
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.20 E-value=0.0011 Score=75.83 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=26.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.||+|+||.|++++++|..|.+.+..+++.||+-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 48999999999999999999997459999999876
No 355
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.18 E-value=0.00032 Score=84.87 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 469999999999999999999998 99999999874
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.18 E-value=0.00028 Score=84.80 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||+||||+|++|.++|.+|++. |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCc
Confidence 69999999999999999999998 99999999964
No 357
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.17 E-value=0.00034 Score=84.02 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++|||||||||++|+++|.+|++. |++|+|+|+++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 369999999999999999999998 99999999985
No 358
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.16 E-value=0.00035 Score=80.61 Aligned_cols=34 Identities=41% Similarity=0.666 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
+||+|||||++|+++|++|++. |.+|+|||+...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 7999999999999999999988 999999999764
No 359
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00032 Score=78.54 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCE-EEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWT-VLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~-VlVLE~G~ 81 (1183)
+.|||||||||++|++||.+++++ +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence 469999999999999999999999 988 88888764
No 360
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.16 E-value=0.00029 Score=82.01 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=30.9
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+||++|||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhccc
Confidence 5899999999999999999999 6999999999864
No 361
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.16 E-value=0.0018 Score=79.17 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=30.4
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~ 689 (1183)
..||+||||+|+||+++|.+|++ .|++|+|+|.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 36899999999999999999999 6999999964
No 362
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.16 E-value=0.00034 Score=86.24 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|.+.|||||||||+||+++|.+|++. |++|+|+|++.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 34569999999999999999999998 99999999874
No 363
>PRK06370 mercuric reductase; Validated
Probab=97.15 E-value=0.00029 Score=85.20 Aligned_cols=38 Identities=39% Similarity=0.529 Sum_probs=34.5
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
|+.+||+||||+|+||+.+|.+|++ .|++|+|+|++..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~~ 39 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGLL 39 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCcc
Confidence 4567999999999999999999999 6999999999753
No 364
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.14 E-value=0.00038 Score=82.69 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
..+||+|||+|++|+++|..|++. |.+|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 468999999999999999999998 9999999996
No 365
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.13 E-value=0.00038 Score=82.06 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++||+|||+|++|+++|..|++. |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999998 99999999875
No 366
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.11 E-value=0.0004 Score=82.01 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
||||||+|++|+++|+.|+++ |.+|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 899999999999999999998 999999999974
No 367
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.11 E-value=0.00036 Score=83.85 Aligned_cols=35 Identities=31% Similarity=0.697 Sum_probs=32.7
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++||+||||||+||+.+|.+|++ .|++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 46999999999999999999999 699999999975
No 368
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.10 E-value=0.00041 Score=84.05 Aligned_cols=35 Identities=34% Similarity=0.579 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
..+||+||||+|++|+++|.+|++. |++|+|||++
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~ 36 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAW 36 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 4579999999999999999999998 9999999984
No 369
>KOG2960|consensus
Probab=97.09 E-value=0.0013 Score=66.18 Aligned_cols=138 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred ccceEEeeCCCchHHHHHHHHh-cCCCCeEEEEcCCCCCCCCcccccccccccCCCCccCccccCccccccCCCCCeeec
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLT-ENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNW 734 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~La-e~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1183)
.+.|+||+|+|.+|+++||..+ +++.++|.+||+. .-
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S------------------------------------------Va 112 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS------------------------------------------VA 112 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEee------------------------------------------ec
Q ss_pred cccceecCcccccceeEeeCCccccchhhccCCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCccccccCCCCChHH
Q psy8892 735 PRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLS 814 (1183)
Q Consensus 735 ~~G~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~l~py~~k~e~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 814 (1183)
|.|..+=|+-.+.+|+.-.+ +
T Consensus 113 PGGGaWLGGQLFSAMvvRKP-----------------------------------------------------------A 133 (328)
T KOG2960|consen 113 PGGGAWLGGQLFSAMVVRKP-----------------------------------------------------------A 133 (328)
T ss_pred CCCcccccchhhhhhhhcCh-----------------------------------------------------------H
Q ss_pred HHHHHHHHHCCCCCCCCCCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCC----eEEEE
Q psy8892 815 AAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITK----RTYGV 890 (1183)
Q Consensus 815 ~~~~~~~~~~G~~~~d~~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~g----ra~GV 890 (1183)
..|+ .|.|+++.|. +...-.-. ..--..+.+......+|++++.-+.|+.++.... . |+.||
T Consensus 134 hLFL---~EigvpYede-gdYVVVKH---------AALFtSTvmsk~LalPNVKLFNAtavEDLivk~g-~~g~~rvaGV 199 (328)
T KOG2960|consen 134 HLFL---QEIGVPYEDE-GDYVVVKH---------AALFTSTVMSKVLALPNVKLFNATAVEDLIVKPG-EKGEVRVAGV 199 (328)
T ss_pred HHHH---HHhCCCcccC-CCEEEEee---------HHHHHHHHHHHHhcCCcceeechhhhhhhhcccC-cCCceEEEEE
Q ss_pred EEe--------------eCCeEEEEEeccEEEEccC
Q psy8892 891 EFS--------------KNRKSYTVKCRKEVILSAG 912 (1183)
Q Consensus 891 ~~~--------------~~~~~~~i~A~k~VILAaG 912 (1183)
... +.. .|.| +-||.++|
T Consensus 200 VTNWtLV~qnHgtQsCMDPN---viea-~~vvS~tG 231 (328)
T KOG2960|consen 200 VTNWTLVTQNHGTQSCMDPN---VIEA-AVVVSTTG 231 (328)
T ss_pred EeeeEEeeeccCccccCCCC---eeeE-EEEEEccC
No 370
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.09 E-value=0.00044 Score=83.69 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..|||||||+|++|+.+|.+|++. |++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 469999999999999999999998 99999999974
No 371
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.08 E-value=0.0005 Score=79.48 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=41.4
Q ss_pred hhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHH
Q psy8892 857 FIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQL 919 (1183)
Q Consensus 857 ~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~l 919 (1183)
.|...+++.|++++.+++|+.|..++ +++++|.... + +++| +.||+|+|++ +++|
T Consensus 142 ~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~-g---~~~a-~~vV~a~G~~-~~~l 196 (337)
T TIGR02352 142 ALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPS-G---DVQA-DQVVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCC-C---EEEC-CEEEEcCChh-hhhc
Confidence 34445667899999999999998865 6788887532 2 6889 6799999975 4544
No 372
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.07 E-value=0.00042 Score=81.89 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=33.5
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+..+|+||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 557899999999999999999999 699999999985
No 373
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.07 E-value=0.0047 Score=73.22 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=30.4
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 79999999999999999999 699999999985
No 374
>KOG0029|consensus
Probab=97.07 E-value=0.00051 Score=82.13 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=34.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEE 83 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~ 83 (1183)
.+..+|||||||++|++||.+|.+. |.+|+|||+-.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCc
Confidence 3568999999999999999999999 9999999998754
No 375
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.06 E-value=0.00044 Score=81.82 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=33.4
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.++||++|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 457999999999999999999999 699999999985
No 376
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.05 E-value=0.00044 Score=81.78 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=33.4
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
..+|+||||+|++|+++|+.|++ .|++|+|||+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 46899999999999999999999 6999999999964
No 377
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.04 E-value=0.00048 Score=83.18 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
+||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 59999999999999999999998 9999999974
No 378
>PRK09897 hypothetical protein; Provisional
Probab=97.03 E-value=0.0068 Score=73.34 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhcC-CCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTEN-SNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~-~G~~VlVLE~G~ 81 (1183)
.+|+|||+|++|+++|.+|++. ...+|+|+|++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 4799999999999999999874 246999999975
No 379
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.02 E-value=0.00085 Score=80.23 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=27.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCC---CEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSN---WTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G---~~VlVLE~G~~ 82 (1183)
||||||+|++|.++|..|++. + .+|+|||+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCC
Confidence 799999999999999999997 5 89999999864
No 380
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.02 E-value=0.00051 Score=82.33 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhc----CCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTE----NSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~----~~G~~VlVLE~G~ 81 (1183)
|||||||+|++|+++|+.|++ . |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 6 99999999964
No 381
>PRK08013 oxidoreductase; Provisional
Probab=97.02 E-value=0.00048 Score=81.62 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=32.9
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
++|+||||+|++|+++|..|++ .|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 5899999999999999999999 6999999999864
No 382
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.02 E-value=0.00055 Score=81.35 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCC-CCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENS-NWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~-G~~VlVLE~G~ 81 (1183)
.|||+|||+|++|+++|..|+++. |.+|+|||+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 389999999999999999999982 49999999986
No 383
>PRK09126 hypothetical protein; Provisional
Probab=97.01 E-value=0.00047 Score=81.58 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=33.0
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
++|+||||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 6999999999999999999999 6999999999964
No 384
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.01 E-value=0.00057 Score=79.97 Aligned_cols=33 Identities=39% Similarity=0.741 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHH--hcCCCCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRL--TENSNWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~L--A~~~G~~VlVLE~G~~ 82 (1183)
||||||+|++|+++|++| ++. |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence 899999999999999999 666 999999999863
No 385
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.01 E-value=0.00049 Score=82.62 Aligned_cols=35 Identities=37% Similarity=0.632 Sum_probs=32.8
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+||+||||||+||+.+|.+|++ .|++|+|+||++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 36999999999999999999999 699999999985
No 386
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.00 E-value=0.00046 Score=82.86 Aligned_cols=35 Identities=46% Similarity=0.712 Sum_probs=32.5
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+||+||||+|+||+.+|.+|++ .|++|+|+|++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~~ 36 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE-HGAKALLVEAKKL 36 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccccc
Confidence 6999999999999999999999 6999999999643
No 387
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.00 E-value=0.00049 Score=83.22 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=33.0
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
.+||+||||+|+||+.+|.+|++ .|++|+|+|++..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~~ 38 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKYW 38 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 46999999999999999999999 6999999999743
No 388
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.99 E-value=0.00059 Score=82.94 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=32.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
...||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 3469999999999999999999998 9999999975
No 389
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.99 E-value=0.00057 Score=82.72 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
+|||||||||++|+.+|.+|++. |++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 48999999999999999999998 9999999994
No 390
>PRK14694 putative mercuric reductase; Provisional
Probab=96.99 E-value=0.0006 Score=82.51 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 579999999999999999999998 99999999974
No 391
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.98 E-value=0.00061 Score=80.33 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCC-CEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSN-WTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G-~~VlVLE~G~~ 82 (1183)
||||||+|++|+++|..|+++ | .+|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999998 9 99999999863
No 392
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.98 E-value=0.00059 Score=82.56 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||+||||||++|+++|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999875
No 393
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.96 E-value=0.00059 Score=80.44 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=32.0
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 5899999999999999999999 699999999875
No 394
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.95 E-value=0.00066 Score=78.31 Aligned_cols=35 Identities=40% Similarity=0.658 Sum_probs=32.2
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREE 693 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~ 693 (1183)
+|++|||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 699999999999999999998 69999999997644
No 395
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.95 E-value=0.00064 Score=82.27 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=33.6
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+.+||+||||+|++|+.+|.+|++ .|++|+|+|+++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 457999999999999999999999 6999999999754
No 396
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.95 E-value=0.00064 Score=77.11 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
|||||||+|++|+++|..|++. |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999998 99999999885
No 397
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.94 E-value=0.00065 Score=80.77 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=32.2
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
++|++|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 5899999999999999999999 699999999986
No 398
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00063 Score=76.19 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=43.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC-CeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN-RKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 861 ~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~-~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
+.++.++.+++++.+.+|.-+ + +.+|.+.+. ++...+.. ..|+++.|..-.-.++...++
T Consensus 188 l~~~~~i~~~~~~~i~ei~G~---~-v~~v~l~~~~~~~~~~~~-~gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 188 LKKNVKIEVLTNTVVKEILGD---D-VEGVVLKNVKGEEKELPV-DGVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHhcCCeEEEeCCceeEEecC---c-cceEEEEecCCceEEEEe-ceEEEecCCCCchHHHhhccc
Confidence 344558999999999999654 2 778888754 56667777 679999998766666665543
No 399
>PLN02576 protoporphyrinogen oxidase
Probab=96.93 E-value=0.001 Score=81.32 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
...++||||||||++||++|++|+++.|.+|+|||+.+...
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 34568999999999999999999985369999999987643
No 400
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.93 E-value=0.00074 Score=81.71 Aligned_cols=34 Identities=44% Similarity=0.707 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
.+||+||||||++|+++|.+|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 469999999999999999999998 9999999994
No 401
>PLN02463 lycopene beta cyclase
Probab=96.92 E-value=0.00067 Score=80.61 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=33.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
...||+||||+|+||+++|..|++ .|++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCc
Confidence 346899999999999999999999 699999999975
No 402
>PTZ00058 glutathione reductase; Provisional
Probab=96.92 E-value=0.00084 Score=81.99 Aligned_cols=37 Identities=41% Similarity=0.544 Sum_probs=33.6
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
+.+||+||||+|+||..+|.+|++ .|++|+|+|++..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~~ 82 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDYL 82 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 358999999999999999999999 6999999999743
No 403
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.92 E-value=0.038 Score=64.42 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=45.3
Q ss_pred hcCCCcEEEcCcEEEEEEEcCCC--CeEEEEEEeeCCeE--EEEEeccEEEEccCccCcHHHHHHcCCCCcc
Q psy8892 862 RKRHNLKVAKEARVTKILIDPIT--KRTYGVEFSKNRKS--YTVKCRKEVILSAGTLNSPQLLMLSGVGPRP 929 (1183)
Q Consensus 862 ~~~~g~~i~~~t~V~~I~~~~~~--gra~GV~~~~~~~~--~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~ 929 (1183)
.+..|+++..+++|+.|.++.++ .+|+++.+..+++. +.+...+-|++.-|++- ..|..|..+
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t-----~~s~~G~~~ 283 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT-----EGSTYGDND 283 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc-----cccccCCCC
Confidence 46789999999999999997432 46778888766554 45567777888888764 335556443
No 404
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.003 Score=68.37 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=46.9
Q ss_pred CCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe--CCeEEEEEeCcEEEEcCCCCCChHHHHHh
Q psy8892 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK--NKQRHTVRARKEVILSAGALNSPQLLMLS 349 (1183)
Q Consensus 287 ~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~--~g~~~~i~A~k~VILAAGai~sp~LLl~S 349 (1183)
.-+|++|++|+.-++|.=|++ +|+|++|++ +++.+.+.-. .|.+--|-+-+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg~----kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDGD----KVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecCCc----eecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 458999999999999987776 999999986 5666667665 488888888888887654
No 405
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.90 E-value=0.00066 Score=80.67 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.5
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+..+|++|||+|++|+++|..|++ .|++|+|||+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 346899999999999999999999 69999999996
No 406
>PRK06996 hypothetical protein; Provisional
Probab=96.90 E-value=0.00091 Score=79.21 Aligned_cols=38 Identities=29% Similarity=0.511 Sum_probs=33.0
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCC---CCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENS---NWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~---G~~VlVLE~G~ 81 (1183)
..+++||+|||+|++|+++|..|++.+ |++|+|+|+.+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 345789999999999999999999972 35899999985
No 407
>PRK13748 putative mercuric reductase; Provisional
Probab=96.89 E-value=0.00082 Score=83.51 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
.+|||||||+|++|+++|.+|++. |++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 469999999999999999999998 99999999974
No 408
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.88 E-value=0.00069 Score=83.47 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.5
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
...||+||||||+||+++|..|++ .|++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence 446999999999999999999999 6999999999753
No 409
>PLN02268 probable polyamine oxidase
Probab=96.88 E-value=0.0011 Score=79.66 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
+|||||+|++|+++|++|.++ |++|+|||+.++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence 799999999999999999998 99999999987643
No 410
>KOG0405|consensus
Probab=96.87 E-value=0.0043 Score=67.40 Aligned_cols=34 Identities=41% Similarity=0.645 Sum_probs=32.4
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
.+|||+|||+|.+|+.+|.++++ .|.+|.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS-HGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence 48999999999999999999999 69999999998
No 411
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.86 E-value=0.00073 Score=81.61 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=31.1
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+||+||||+|+||+.+|.+|++ .|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 5999999999999999999999 69999999973
No 412
>PRK07233 hypothetical protein; Provisional
Probab=96.85 E-value=0.00094 Score=80.25 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
+|||||+|++|+++|+.|+++ |++|+|||+.....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence 589999999999999999998 99999999998643
No 413
>PLN02546 glutathione reductase
Probab=96.85 E-value=0.00088 Score=81.87 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~ 79 (1183)
.+|||||||+|++|..+|.+||+. |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 369999999999999999999998 999999996
No 414
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.83 E-value=0.00082 Score=81.46 Aligned_cols=34 Identities=44% Similarity=0.665 Sum_probs=32.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~ 689 (1183)
..+||+||||+|+||+.+|.+|++ .|++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 457999999999999999999999 6999999998
No 415
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.83 E-value=0.0011 Score=82.68 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=34.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHhc-CCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTE-NSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~-~~G~~VlVLE~G~ 81 (1183)
|.+++||+|||+|++|+++|..|++ . |.+|+|||+.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence 6678999999999999999999999 6 99999999976
No 416
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.82 E-value=0.001 Score=78.83 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcC--CCCEEEEEcCc
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTEN--SNWTVLLLEAG 80 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~--~G~~VlVLE~G 80 (1183)
+.+||+|||+|++|+++|+.|+++ .|.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999874 38999999995
No 417
>PLN02507 glutathione reductase
Probab=96.82 E-value=0.00092 Score=81.18 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~ 79 (1183)
.+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 479999999999999999999998 999999997
No 418
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.82 E-value=0.001 Score=77.60 Aligned_cols=33 Identities=36% Similarity=0.704 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTEN-SNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~-~G~~VlVLE~G~ 81 (1183)
||||||+|++|+++|++|+++ +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999974 589999999986
No 419
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.81 E-value=0.00088 Score=81.08 Aligned_cols=35 Identities=46% Similarity=0.657 Sum_probs=32.9
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+||+||||+|+||+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 57999999999999999999999 599999999976
No 420
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.80 E-value=0.001 Score=82.52 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||+||||+|++|..+|.++++. |+||+|||++.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~ 149 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDD 149 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 79999999999999999999998 99999999763
No 421
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.78 E-value=0.00095 Score=78.77 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=31.3
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
|++|||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCc
Confidence 89999999999999999999 6999999999974
No 422
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.76 E-value=0.00099 Score=80.62 Aligned_cols=35 Identities=46% Similarity=0.675 Sum_probs=32.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
.+||+||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 46999999999999999999999 699999999943
No 423
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.76 E-value=0.001 Score=78.90 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=31.7
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCC---CCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENP---NWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~---G~~VlvLE~G 690 (1183)
..+|++|||+|++|+++|+.|++ . |.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 46899999999999999999998 6 9999999996
No 424
>KOG0029|consensus
Probab=96.75 E-value=0.0014 Score=78.49 Aligned_cols=39 Identities=38% Similarity=0.497 Sum_probs=35.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
....++||||+|++|++||..|.+ .|.+|+|||+....+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcC
Confidence 346799999999999999999999 699999999987654
No 425
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.73 E-value=0.0011 Score=80.21 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCC--CEEEEEcCcCCCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSN--WTVLLLEAGPEEI 84 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G--~~VlVLE~G~~~~ 84 (1183)
+|||||||++|+++|+.|+++ | ++|+|+|+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 699999999999999999997 6 8999999987643
No 426
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.73 E-value=0.0017 Score=80.01 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=34.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 44 FAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 44 ~~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..+.++|+|||||++|+++|..|++. |.+|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 45679999999999999999999998 99999999975
No 427
>PRK09897 hypothetical protein; Provisional
Probab=96.72 E-value=0.014 Score=70.58 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=29.9
Q ss_pred ceEEeeCCCchHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGRE 692 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~-~G~~VlvLE~G~~ 692 (1183)
.+++|||+|++|+++|.+|++. ..++|+|+|+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 3799999999999999999873 2468999999753
No 428
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.72 E-value=0.0011 Score=78.25 Aligned_cols=32 Identities=41% Similarity=0.611 Sum_probs=30.5
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
|+||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCC
Confidence 89999999999999999999 699999999986
No 429
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.71 E-value=0.0011 Score=78.11 Aligned_cols=36 Identities=47% Similarity=0.674 Sum_probs=33.6
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
+.+||+||||+|+||.++|.+|++ .|.+|+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence 458999999999999999999999 699999999995
No 430
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.71 E-value=0.0011 Score=80.13 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=31.8
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
||+||||+|+||+.+|.+|++ .|++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCcc
Confidence 799999999999999999999 6999999999753
No 431
>PRK06753 hypothetical protein; Provisional
Probab=96.70 E-value=0.0013 Score=77.29 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
||||||+|++|+++|..|+++ |.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999998 999999999973
No 432
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.69 E-value=0.0011 Score=80.10 Aligned_cols=33 Identities=42% Similarity=0.651 Sum_probs=31.1
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4899999999999999999999 69999999994
No 433
>PLN02576 protoporphyrinogen oxidase
Probab=96.67 E-value=0.0013 Score=80.38 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=34.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCC-CCeEEEEcCCCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENP-NWTVLLLEAGREES 694 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~-G~~VlvLE~G~~~~ 694 (1183)
.++|++|||+|++||++|++|++ . |++|+|||+.+..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence 35799999999999999999999 7 89999999987654
No 434
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.66 E-value=0.0016 Score=78.91 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCC---CCEEEEEcCcCCCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENS---NWTVLLLEAGPEEI 84 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~---G~~VlVLE~G~~~~ 84 (1183)
.||+|||+|++|+++|++|+++. |++|+|+|+.+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 59999999999999999999862 79999999987643
No 435
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.66 E-value=0.0016 Score=78.72 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
.+||+||||+|++|..+|.++|+..|++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 47999999999999999999999428999999985
No 436
>PLN02568 polyamine oxidase
Probab=96.65 E-value=0.0019 Score=78.74 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=34.1
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCC-----CEEEEEcCcCCCC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSN-----WTVLLLEAGPEEI 84 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G-----~~VlVLE~G~~~~ 84 (1183)
.+..||||||+|++|+++|++|++. | ++|+|+|+.....
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence 3468999999999999999999987 5 8999999987643
No 437
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.65 E-value=0.0013 Score=74.60 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=31.3
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
||+||||+|++|+.+|..|++ .|.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 699999999999999999999 599999999986
No 438
>PTZ00367 squalene epoxidase; Provisional
Probab=96.63 E-value=0.0015 Score=79.87 Aligned_cols=36 Identities=33% Similarity=0.619 Sum_probs=33.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
..++|+||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 357899999999999999999999 699999999975
No 439
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.63 E-value=0.0015 Score=78.31 Aligned_cols=34 Identities=35% Similarity=0.632 Sum_probs=31.0
Q ss_pred ceEEeeCCCchHHHHHHHHhcC---CCCeEEEEcCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTEN---PNWTVLLLEAGR 691 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~---~G~~VlvLE~G~ 691 (1183)
||+||||+|++|+++|+.|++. .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999982 399999999964
No 440
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0019 Score=73.65 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=34.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEE 83 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~ 83 (1183)
.+..||||||+|.+||++|++|.++ |++|+|||+-++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCc
Confidence 3568999999999999999999999 9999999988754
No 441
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0017 Score=75.55 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=31.9
Q ss_pred EEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 50 FIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 50 vIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
|+|+|+|.||+++|++||++ |++|+|+|+++...
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 89999999999999999999 99999999998643
No 442
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.62 E-value=0.0014 Score=79.65 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=31.4
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
..||+||||+|+||+.+|.+|++ .|++|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 36999999999999999999999 69999999973
No 443
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.61 E-value=0.0017 Score=75.11 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
-||+|||+|.+|+.+|+.||+. |++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 3899999999999999999998 999999998763
No 444
>PRK10262 thioredoxin reductase; Provisional
Probab=96.60 E-value=0.0016 Score=74.60 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 45 ~~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
++.+||+|||+|++|+.+|..|++. |++|+++|+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~~ 39 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGME 39 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEeec
Confidence 4579999999999999999999998 99999999653
No 445
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.59 E-value=0.0022 Score=67.89 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
||||||+|++|+.+|.+|++. |.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998875
No 446
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.59 E-value=0.021 Score=65.87 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhcCC-CCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENS-NWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~-G~~VlVLE~G~~ 82 (1183)
-+||||||.+|+.+|.+|++.+ +.+|++||+-..
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 5899999999999999999873 589999999875
No 447
>PLN02268 probable polyamine oxidase
Probab=96.59 E-value=0.0021 Score=77.27 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.8
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESL 695 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~~ 695 (1183)
++||||+|++||++|++|.+ .|++|+|||+.+..++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCCc
Confidence 78999999999999999999 6999999999887643
No 448
>PLN02546 glutathione reductase
Probab=96.57 E-value=0.0015 Score=79.83 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=31.1
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~ 689 (1183)
.+||+||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 36999999999999999999999 6999999996
No 449
>PRK13748 putative mercuric reductase; Provisional
Probab=96.56 E-value=0.0017 Score=80.80 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=33.1
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
..+||+||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 96 ~~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~ 131 (561)
T PRK13748 96 ERPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT 131 (561)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 347999999999999999999999 699999999974
No 450
>PRK07236 hypothetical protein; Provisional
Probab=96.55 E-value=0.0018 Score=76.45 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=32.6
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
...|++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 35899999999999999999999 699999999985
No 451
>PRK14694 putative mercuric reductase; Provisional
Probab=96.55 E-value=0.0018 Score=78.45 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.6
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
..+||+||||+|+||+++|.+|++ .|++|+|+|++..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~~ 40 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGTI 40 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEcccc
Confidence 347999999999999999999999 6999999999753
No 452
>PLN02507 glutathione reductase
Probab=96.53 E-value=0.0017 Score=78.96 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=31.2
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~ 689 (1183)
.+||+||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 37999999999999999999999 6999999996
No 453
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.51 E-value=0.0021 Score=77.80 Aligned_cols=33 Identities=39% Similarity=0.680 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCc
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G 80 (1183)
+||+||||+|++|..+|.+|++. |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 58999999999999999999998 9999999986
No 454
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.51 E-value=0.0019 Score=78.03 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=31.5
Q ss_pred eEEeeCCCchHHHHHHHHhcCCC--CeEEEEcCCCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPN--WTVLLLEAGREES 694 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G--~~VlvLE~G~~~~ 694 (1183)
+++|||+|++||+||++|++ .| ++|+|||+.+..+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCCc
Confidence 58999999999999999999 47 8999999987654
No 455
>PRK06996 hypothetical protein; Provisional
Probab=96.51 E-value=0.0022 Score=75.98 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=33.3
Q ss_pred cccccceEEeeCCCchHHHHHHHHhcCCC----CeEEEEcCCC
Q psy8892 653 IFEKEYDFIVIGAGSGGSVIANRLTENPN----WTVLLLEAGR 691 (1183)
Q Consensus 653 ~~~~~~D~VVIGsG~aG~~~A~~Lae~~G----~~VlvLE~G~ 691 (1183)
+...++|++|||+|++|+++|..|++ .| ++|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence 33667999999999999999999999 45 5799999985
No 456
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.50 E-value=0.0031 Score=80.93 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...||+|||||+||+++|+.|++. |++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence 458999999999999999999998 999999999864
No 457
>PLN02568 polyamine oxidase
Probab=96.50 E-value=0.0023 Score=78.01 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=35.1
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCC-----CeEEEEcCCCCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPN-----WTVLLLEAGREESL 695 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G-----~~VlvLE~G~~~~~ 695 (1183)
|....|+||||+|++|+++|.+|++ .| ++|+|||+....++
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCcCC
Confidence 3456899999999999999999998 46 89999999876543
No 458
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.48 E-value=0.023 Score=66.89 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=36.5
Q ss_pred hhcccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEEEEEeCcEEEEcCCCCCChHH
Q psy8892 282 LRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQL 345 (1183)
Q Consensus 282 l~~~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~~i~A~k~VILAAGai~sp~L 345 (1183)
|...+++ |++|+.++.|++|..+++ + .+|++. ++. .++|++ ||+|+|++ ++.|
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~----~-~~v~t~-~g~--~~~a~~-vV~a~G~~-~~~l 193 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE----G-WQLLDA-NGE--VIAASV-VVLANGAQ-AGQL 193 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC----e-EEEEeC-CCC--EEEcCE-EEEcCCcc-cccc
Confidence 3344556 999999999999987655 4 334432 331 478986 99999986 4443
No 459
>PLN02676 polyamine oxidase
Probab=96.47 E-value=0.0031 Score=76.27 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCC-EEEEEcCcCCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNW-TVLLLEAGPEE 83 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~-~VlVLE~G~~~ 83 (1183)
..+||||||+|++|+++|++|++. |. +|+|||+....
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence 368999999999999999999998 87 69999998754
No 460
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.46 E-value=0.0022 Score=77.70 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=32.9
Q ss_pred ceEEeeCCCchHHHHHHHHhcCC----CCeEEEEcCCCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENP----NWTVLLLEAGREES 694 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~----G~~VlvLE~G~~~~ 694 (1183)
.|++|||+|++||++|++|++ . |++|+|+|+.+..+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcCc
Confidence 599999999999999999998 5 89999999987654
No 461
>PRK12831 putative oxidoreductase; Provisional
Probab=96.44 E-value=0.0038 Score=75.15 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...||+|||+|++|+++|++|++. |++|+|+|+...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 457999999999999999999998 999999998754
No 462
>PRK14727 putative mercuric reductase; Provisional
Probab=96.44 E-value=0.0029 Score=76.73 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
..||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 469999999999999999999998 99999999985
No 463
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.44 E-value=0.004 Score=74.76 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
..+||+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 468999999999999999999998 999999999764
No 464
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.43 E-value=0.0022 Score=74.85 Aligned_cols=33 Identities=42% Similarity=0.840 Sum_probs=30.5
Q ss_pred eEEeeCCCchHHHHHHHHhcC-CCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~-~G~~VlvLE~G~ 691 (1183)
|++|||+|+||+++|.+|++. +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999982 399999999986
No 465
>PRK07588 hypothetical protein; Provisional
Probab=96.43 E-value=0.0021 Score=75.96 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.6
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
|++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCC
Confidence 89999999999999999999 699999999985
No 466
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.43 E-value=0.0033 Score=78.52 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=34.7
Q ss_pred ccccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 654 FEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 654 ~~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
|..++|++|||+|++|+++|..|++.+|.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 466899999999999999999999822999999999863
No 467
>PRK05868 hypothetical protein; Validated
Probab=96.43 E-value=0.0025 Score=74.60 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999998 999999999863
No 468
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.39 E-value=0.17 Score=59.20 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=42.4
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEeCCeEE--EEEeCcEEEEcCCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRH--TVRARKEVILSAGAL 340 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~~g~~~--~i~A~k~VILAAGai 340 (1183)
.++..||++..+++|+.|.++..++.+.|+++++..+|... .+..+.-|++.-|.+
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 34578999999999999999866555578888888765544 455666677777765
No 469
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.39 E-value=0.0023 Score=79.30 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=31.9
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
.+||+||||+|++|..+|.++++ .|++|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 47999999999999999999999 69999999975
No 470
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.38 E-value=0.0041 Score=75.20 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...+|+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence 457999999999999999999998 999999999864
No 471
>PRK06753 hypothetical protein; Provisional
Probab=96.38 E-value=0.0025 Score=74.86 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=31.2
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
|++|||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 79999999999999999999 6999999999974
No 472
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.38 E-value=0.061 Score=62.16 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=41.9
Q ss_pred hhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHHHHcC
Q psy8892 856 AFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSG 924 (1183)
Q Consensus 856 ~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL~~SG 924 (1183)
.|.....++.|++|++++.|++|.-+ +|.+.++++ +|.+ +-||-|||.=.+|-+-.++|
T Consensus 213 ~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~-~tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 213 KYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPA-DTVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEec-CEEEEcCCCcCChhhhhcCh
Confidence 35555667899999999999999543 466655443 6888 67999999666555443344
No 473
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.36 E-value=0.0024 Score=77.07 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.4
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCC-CCeEEEEcCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENP-NWTVLLLEAG 690 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~-G~~VlvLE~G 690 (1183)
.+||+||||+|++|..+|.++++ . |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 36999999999999999999999 5 8999999973
No 474
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.35 E-value=0.0025 Score=77.28 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhcCC-----CCEEEEEcCcCCCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENS-----NWTVLLLEAGPEEI 84 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~-----G~~VlVLE~G~~~~ 84 (1183)
+|||||+|++|+++|++|+++. |.+|+|||+.+...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 6999999999999999999851 47999999987644
No 475
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.32 E-value=0.0034 Score=66.40 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=30.1
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
|+||||||+||+.+|.+|++ .+.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 79999999999999999998 699999998875
No 476
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.31 E-value=0.006 Score=80.27 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred ccCCCCeEEEcCceEEEEEeeCCCCcceEEEEEEEe-CCeEEEEEeCcEEEEcCCCCCChHHHHHhCCC
Q psy8892 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFK-NKQRHTVRARKEVILSAGALNSPQLLMLSGIG 352 (1183)
Q Consensus 285 ~~~~~g~~i~~~~~V~~I~~~~~~~~~rv~GV~~~~-~g~~~~i~A~k~VILAAGai~sp~LLl~SGig 352 (1183)
.+++.|++|++++.|+++.-+ + ++.+|++.. ++...++.++. |+++.|..-+..|+...|..
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g~-~----~v~~V~l~~~~g~~~~i~~D~-V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEGG-K----RVSGVAVARNGGAGQRLEADA-LAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHcCCEEEcCCeEEEEecC-C----cEEEEEEEecCCceEEEECCE-EEEcCCcCchhHHHHhcCCC
Confidence 345679999999999998643 2 677888764 34445789985 99999988777877766654
No 477
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.29 E-value=0.026 Score=66.51 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHHHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLL 920 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~lL 920 (1183)
|...+++ |++++++++|++|..++ ++ .+|+...+. .++| +.||+|+|++ ++.++
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~---~~~a-~~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGE---VIAA-SVVVLANGAQ-AGQLA 194 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCC---EEEc-CEEEEcCCcc-ccccc
Confidence 4345566 99999999999998765 43 334433221 4788 6799999976 45444
No 478
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0034 Score=73.06 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.6
Q ss_pred EEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 660 FIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 660 ~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
++|+|+|.|||++|+.||+ +|++|+|+|+++..+
T Consensus 3 Vai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHh-CCCceEEEeccCccC
Confidence 7899999999999999999 699999999998654
No 479
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.18 E-value=0.022 Score=68.25 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCEEEEEcCcC
Q psy8892 49 DFIVVGSGSGGSVVANRLTEN-SNWTVLLLEAGP 81 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~-~G~~VlVLE~G~ 81 (1183)
.|||||+|++|+.+|.+|.+. ++.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 699999999999999999873 468999999986
No 480
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.18 E-value=0.0035 Score=75.88 Aligned_cols=33 Identities=42% Similarity=0.664 Sum_probs=31.1
Q ss_pred cceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCC
Q psy8892 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690 (1183)
Q Consensus 657 ~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G 690 (1183)
+||+||||+|++|..+|.+|++ .|++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5899999999999999999999 69999999974
No 481
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.16 E-value=0.0056 Score=77.22 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...+|+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 356999999999999999999998 999999999764
No 482
>PRK10262 thioredoxin reductase; Provisional
Probab=96.16 E-value=0.0035 Score=71.93 Aligned_cols=64 Identities=8% Similarity=0.140 Sum_probs=45.4
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeC---CeEEEEEeccEEEEccCccCcHHHHHHcCC
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKN---RKSYTVKCRKEVILSAGTLNSPQLLMLSGV 925 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~---~~~~~i~A~k~VILAaGa~~tp~lL~~SGI 925 (1183)
+....++.|+++++++.|++|.-++ +++.+|++... +...++.+ +.||+++|.--...++ .+++
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHh-hccc
Confidence 3344567899999999999997543 46788887642 34457888 7899999977666544 3344
No 483
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.11 E-value=0.0041 Score=71.94 Aligned_cols=34 Identities=35% Similarity=0.284 Sum_probs=31.5
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
-|++|||+|.+|+.+|..||+ .|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence 389999999999999999999 6999999998864
No 484
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.11 E-value=0.0048 Score=71.94 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
.||+|||+|.+|+.+|..||+. |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3899999999999999999998 999999998763
No 485
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.11 E-value=0.075 Score=53.66 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=27.2
Q ss_pred EeeCCCchHHHHHHHHhcCC----CCeEEEEcCCC
Q psy8892 661 IVIGAGSGGSVIANRLTENP----NWTVLLLEAGR 691 (1183)
Q Consensus 661 VVIGsG~aG~~~A~~Lae~~----G~~VlvLE~G~ 691 (1183)
+|||+|++|++++.+|.+.. ..+|+|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999853 67899999964
No 486
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.10 E-value=0.0062 Score=73.23 Aligned_cols=32 Identities=34% Similarity=0.756 Sum_probs=27.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+||+||||+|++|..+|.++ . |+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--A-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 59999999999998887554 5 99999999863
No 487
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.09 E-value=0.0046 Score=74.72 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCCCC
Q psy8892 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84 (1183)
Q Consensus 49 DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~~~ 84 (1183)
+|+|||+|++|+++|++|+++ |++|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 489999999999999999998 99999999987643
No 488
>KOG2614|consensus
Probab=96.09 E-value=0.0054 Score=69.02 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcC
Q psy8892 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81 (1183)
Q Consensus 47 ~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~ 81 (1183)
+-+|||||+|++|+++|..|++. |.+|+|+|+-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence 35899999999999999999998 99999999954
No 489
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.08 E-value=0.0074 Score=77.42 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...||+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 457999999999999999999998 999999998653
No 490
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.0049 Score=66.64 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=47.1
Q ss_pred hhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEeeCCeEEEEEeccEEEEccCccCcHH
Q psy8892 858 IRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQ 918 (1183)
Q Consensus 858 L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~~~~~~~~i~A~k~VILAaGa~~tp~ 918 (1183)
|....++.|..++++-+|.+..+.+ ++++.|.++ +.....++| +.+|||+|+|.|.-
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~tr-n~~diP~~a-~~~VLAsGsffskG 320 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTR-NHADIPLRA-DFYVLASGSFFSKG 320 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeeeC--CeEEEEEec-ccccCCCCh-hHeeeecccccccc
Confidence 4444567899999999999999987 899999877 456678999 78999999997654
No 491
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.0056 Score=70.02 Aligned_cols=39 Identities=33% Similarity=0.478 Sum_probs=35.0
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
....|+||||+|.+||++|++|.+ .|++|+|||+.+..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCcC
Confidence 347899999999999999999999 699999999987653
No 492
>PRK14727 putative mercuric reductase; Provisional
Probab=96.06 E-value=0.0051 Score=74.65 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=33.2
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
...||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 457999999999999999999999 699999999974
No 493
>PRK05868 hypothetical protein; Validated
Probab=96.06 E-value=0.0047 Score=72.35 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=31.1
Q ss_pred eEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCC
Q psy8892 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692 (1183)
Q Consensus 659 D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~ 692 (1183)
|++|||+|++|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Confidence 89999999999999999999 6999999999863
No 494
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.04 E-value=0.0054 Score=75.61 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=33.1
Q ss_pred cccceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCC
Q psy8892 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691 (1183)
Q Consensus 655 ~~~~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~ 691 (1183)
....+++|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 456899999999999999999999 599999999975
No 495
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.00 E-value=0.0069 Score=79.29 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 46 ~~~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
...+|+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 357999999999999999999998 999999999864
No 496
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.99 E-value=0.0062 Score=69.16 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCEEEEEcCcCC
Q psy8892 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82 (1183)
Q Consensus 48 ~DvIVVGsG~aG~~~A~~LA~~~G~~VlVLE~G~~ 82 (1183)
=+++|||+|++|+++|..||+. |++|.|+|+-+.
T Consensus 125 ~svLVIGGGvAGitAAl~La~~-G~~v~LVEKeps 158 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM-GFKVYLVEKEPS 158 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 4799999999999999999999 999999999874
No 497
>PLN02676 polyamine oxidase
Probab=95.98 E-value=0.0063 Score=73.62 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=33.8
Q ss_pred ccceEEeeCCCchHHHHHHHHhcCCCC-eEEEEcCCCCCC
Q psy8892 656 KEYDFIVIGAGSGGSVIANRLTENPNW-TVLLLEAGREES 694 (1183)
Q Consensus 656 ~~~D~VVIGsG~aG~~~A~~Lae~~G~-~VlvLE~G~~~~ 694 (1183)
..+|+||||+|.+|+++|.+|++ .|. +|+|||+....+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCC
Confidence 46899999999999999999999 588 699999987654
No 498
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.95 E-value=0.0062 Score=69.17 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=32.7
Q ss_pred ceEEeeCCCchHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy8892 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES 694 (1183)
Q Consensus 658 ~D~VVIGsG~aG~~~A~~Lae~~G~~VlvLE~G~~~~ 694 (1183)
-+++|||||++|+++|..||+ .|.+|.|+||.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCccc
Confidence 378999999999999999999 599999999998653
No 499
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.94 E-value=0.013 Score=67.43 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=67.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCceeeeecccccCCccchHHHhhhhhhhcCCCcEEEcCcEEEEEEEcCCCCeEEEEEEe
Q psy8892 814 SAAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTYGVEFS 893 (1183)
Q Consensus 814 ~~~~~~~~~~~G~~~~d~~~~~~g~~~~~~~~~~g~r~~~~~~~L~~~~~~~g~~i~~~t~V~~I~~~~~~gra~GV~~~ 893 (1183)
.+.+++.++++|++...- ..|..+ |. ..+..+....|...+++.|++|++++.|++| ++ ++ .+|.+.
T Consensus 56 ~~d~~~fF~~~Gi~~~~e---~~grvf-P~----S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~ 122 (376)
T TIGR03862 56 AVALQDWARGLGIETFVG---SSGRVF-PV----EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETP 122 (376)
T ss_pred HHHHHHHHHHCCCceEEC---CCCEEC-CC----CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEEC
Confidence 345667778889865311 112222 11 1233344445556677899999999999999 33 22 445443
Q ss_pred eCCeEEEEEeccEEEEccCccCcHHHHHHcCCCCccchhhcCCCccccCC
Q psy8892 894 KNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK 943 (1183)
Q Consensus 894 ~~~~~~~i~A~k~VILAaGa~~tp~lL~~SGIG~~~~l~~~gi~v~~dlp 943 (1183)
.+ ...++| +.||||+|+...|++ =-+|-| -..++++|+.++.-.|
T Consensus 123 ~~--~~~~~a-~~vIlAtGG~s~p~~-Gs~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 123 DG--QSTIEA-DAVVLALGGASWSQL-GSDGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred CC--ceEEec-CEEEEcCCCcccccc-CCCcHH-HHHHHHCCCcccCCcC
Confidence 22 235888 679999999988875 112222 2456677877775544
No 500
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.94 E-value=0.0059 Score=71.43 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.2
Q ss_pred EEEECCChhHHHHHHHHhcCCC--CEEEEEcCcCCCC
Q psy8892 50 FIVVGSGSGGSVVANRLTENSN--WTVLLLEAGPEEI 84 (1183)
Q Consensus 50 vIVVGsG~aG~~~A~~LA~~~G--~~VlVLE~G~~~~ 84 (1183)
++|||||++||++|++|.++ + ..|+|+|++++..
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCC
Confidence 89999999999999999998 7 9999999997644
Done!