RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8892
(1183 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 549 bits (1416), Expect = 0.0
Identities = 146/530 (27%), Positives = 239/530 (45%), Gaps = 50/530 (9%)
Query: 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREES--LLTDVPLFVSYMV-DTDFNW 713
++D++V+GAG+ G+V+A RLTE+P+ +VL+LEAG + L + PL +V ++ F+W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 714 GYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEAL-GNPGWSY 772
Y T G + ++ +PRG+ +GG+S ++YMV RG +DFD + A+ G+ GW++
Sbjct: 62 NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 773 RDVLPYFKKSED-------ISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELG 825
++ + +K+E + S HG G + + + TPL L E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 826 YD---QVDH-CENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILID 881
+ D +P+G S+ +A+ G R S+S A++RP + R NL V A+VTK++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 882 PITK-----RTYGVEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNI 936
T R + + TV +KEV+LSAG++ +P LL LSG+G L + I
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGI 297
Query: 937 PVIQDLK-VGYNMQDHLSMAGLVFLVNSSVTI---VESKYTKPRYLMDFLVNGAGPLTLP 992
I + VG N+ DHL + F VNS+ T L + GPLT
Sbjct: 298 DTIVNNPSVGRNLSDHL-LLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTAL 356
Query: 993 GGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPFAER 1052
A LA+ + GP S S+++++
Sbjct: 357 -IANHLAWLRLPSNSSIFQTFPDPAAGP--------NSAHWETIFSNQWFHPAIPRPDTG 407
Query: 1053 EAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAV 1112
S+ L+ P +RG ++ L +SNPFD P P YLS D+ +I+A+K +
Sbjct: 408 SFMSVTNALISPVARGDIK-------LATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNL 460
Query: 1113 ELSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQIC 1162
+A + + P + D R + H +
Sbjct: 461 RFLSGQAWADFVIRPF---DPRLR--DPTDDAAIESYIRDNANTIFHPVG 505
Score = 500 bits (1290), Expect = e-165
Identities = 146/554 (26%), Positives = 231/554 (41%), Gaps = 115/554 (20%)
Query: 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP--EEIILDEIPLFVSH-IVSSDFNW 103
++D++VVG+G+ G+VVA RLTE+ + +VL+LEAG E ++ E PL + +S F+W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 104 GYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVM 163
YTT G + +PRG+++GG+S +YMV RG D+D +AA
Sbjct: 62 NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAA--------- 108
Query: 164 GGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSED-------MKTAELKSS 216
G+ GW+++ + + +K+E T+
Sbjct: 109 -----------------------VTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIP 145
Query: 217 PYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNA---IGFSYVLANTGNGE 273
HG G + I P + TPL VL E + + +G S+ +A+ GNG+
Sbjct: 146 AVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVGNGQ 205
Query: 274 RYSASRAFLRPIRKRPNLKVAKRARVTKVLID---ENDNLKRATGVEFFKNKQRHTVRAR 330
R S+S A+LRP + RPNL V A+VTK++ R + TV A+
Sbjct: 206 RSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAK 265
Query: 331 KEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVND 389
KEV+LSAG++ +P LL LSGIG + L + I I + VG NL DH+ + F VN
Sbjct: 266 KEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHL-LLPAAFFVNS 324
Query: 390 SVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQF 449
+ T +
Sbjct: 325 NQTFDNIF------------------------------------------------RDSS 336
Query: 450 QKPRYIVDYWFRRQGPYTSPGGAETMALISSKFEND--KTRPDIELVFGPGALTGDSNGS 507
+ + + R GP T+ A +A + + +T PD S
Sbjct: 337 EFNVDLDQWTNTRTGPLTAL-IANHLAWLRLPSNSSIFQTFPDPA----------AGPNS 385
Query: 508 LRSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSD 567
S++++ ++ ++ P +RG +KL +SNPFD P P YLS
Sbjct: 386 AHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLST 445
Query: 568 SRDLDVLIEAIKMC 581
D+ +I+A+K
Sbjct: 446 EFDIFTMIQAVKSN 459
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA
MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2
d.16.1.1
Length = 587
Score = 541 bits (1396), Expect = e-180
Identities = 121/550 (22%), Positives = 215/550 (39%), Gaps = 57/550 (10%)
Query: 639 DAILTPSNIVQD-TKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG---REES 694
I S+++ D +K+ K YD+I+ G G G +A +LTENP VL++E G +
Sbjct: 5 QQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDG 64
Query: 695 LLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRG 754
+ + P + T + Y T ++++T N GK +GG+++IN ++R
Sbjct: 65 AIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSWTRP 118
Query: 755 VPQDFDNWEAL-GNPGWSYRDVLPYFKKSED--------ISVSRLKGSPYHGIGGYLKV- 804
D+WE + G GW++ ++ Y KK+E ++ + HG G ++
Sbjct: 119 DKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSG 178
Query: 805 --EQTSWRTPLSAAFLEAGSELGYDQVD--HCENPIGFSYVLANKIR-GARQSASKAFIR 859
+ +P+ A + S LG C +P G S ++ N R A++A++
Sbjct: 179 ARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLL 238
Query: 860 PIRKRHNLKVAKEARVTKILIDPIT--KRTYGVEFSKNRK-SYTVKCRKEVILSAGTLNS 916
P +R NL++ V K+L + GV F N+ ++ V + EV+L+AG+ S
Sbjct: 239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAIS 298
Query: 917 PQLLMLSGVGPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTI---VESKYT 973
P +L SG+G + L++ N+ + DL VG NMQD + +S+
Sbjct: 299 PLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQT-TTTVSSRASSAGAGQGQAVFFAN 357
Query: 974 KPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRK 1033
D+ L A + ++ L
Sbjct: 358 FTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLL--------- 408
Query: 1034 VLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFY-P 1092
D+ + + P +RG V + SS+P+ P
Sbjct: 409 -----DEDVAFAELFMDTEGKINFDLWDLIPFTRGSVH-------ILSSDPYLWQFANDP 456
Query: 1093 NYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQ 1152
+ + DL A K+A +L+ AM++Y + PG + + W+ Q
Sbjct: 457 KFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYNLVQNATLSQWSDYVLQ 513
Query: 1153 LTTNLHHQIC 1162
H +
Sbjct: 514 NFRPNWHAVS 523
Score = 484 bits (1247), Expect = e-158
Identities = 113/555 (20%), Positives = 190/555 (34%), Gaps = 119/555 (21%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEE---IILDEIPLFVSHIVSSDF 101
+ YD+I+ G G G VA +LTEN VL++E G E + E P I +
Sbjct: 22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTV 81
Query: 102 NWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGK 161
+ Y T + N+ N GK +GG+++ N +TR D W
Sbjct: 82 DQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEK------- 128
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSED--------MKTAEL 213
G GW+++ + Y KK+E +
Sbjct: 129 -------------------------VFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHS 163
Query: 214 KSSPYHGVGGYLKI---ERPLWRTPLAKCVLDAGHEMGYDIV-DPSEPNAIGFSYVLANT 269
++ HG G ++ + +P+ K +++ +G + D + G S ++ N
Sbjct: 164 FNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNL 223
Query: 270 G-NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNK-QRHTV 327
N R A+RA+L P +R NL++ V KVL + + +A GV F NK V
Sbjct: 224 DENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDV 283
Query: 328 RARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLV 387
A+ EV+L+AG+ SP +L SGIG + L++ N+ + DL VG N+QD +
Sbjct: 284 FAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQT-TTTVSSRA 342
Query: 388 NDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVES 447
+ + +
Sbjct: 343 SSAGAGQGQAV------------------------------------------------F 354
Query: 448 QFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGS 507
DY + + + ++ ++ T ++ L
Sbjct: 355 FANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLL------ 408
Query: 508 LRSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFY-PNYLS 566
D+ N L PF+RG V + SS+P+ P +
Sbjct: 409 --------DEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFL 460
Query: 567 DSRDLDVLIEAIKMC 581
+ DL A K+
Sbjct: 461 NEFDLLGQAAASKLA 475
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 522 bits (1347), Expect = e-173
Identities = 116/531 (21%), Positives = 200/531 (37%), Gaps = 46/531 (8%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG---REESLLTDVPLFVSYMVDTDFN 712
+DF+++G G+ G+ +A RL ENPN TVL++EAG E+ P + ++ ++
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 713 WGYKTEKDERFCRGMSDQTCNWP--RGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGW 770
W YKT + P RGK +GG+S +NY + G FD WE G W
Sbjct: 65 WAYKTTMVR----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120
Query: 771 SYRDVLPYFKKSED---ISVSRLKGSPYHGIGGYLKVEQTSW---RTPLSAAFLEAGSEL 824
++ ++PY +KS G GG + + P +A +
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSM 180
Query: 825 GYDQVD--HCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDP 882
G ++ + G ++ RG R + ++ + N+ + E +++I+
Sbjct: 181 GQPLIENIYDGEMDGLTHCCDTIYRGQRSGSF----LFVKNKPNITIVPEVHSKRLIINE 236
Query: 883 ITKRTYGVEF-SKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQD 941
+ GV + +EVILS G +P+LLMLSG+GP L I I D
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 942 LK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYT----KPRYLMDFLVNGAGPLTLPGGAE 996
+ VG N+ DH + V V + + + + + N +GP+ G E
Sbjct: 297 SRHVGQNLMDHPGV-PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGS-GLLE 354
Query: 997 ALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGS----LRKVLGISDKFYNKVYRPFAER 1052
+ F + + + G S + + + +
Sbjct: 355 LVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTG 414
Query: 1053 EAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAV 1112
+ ++V LVRP S G V L S++PF P N+ ++ D+ + E I+ +
Sbjct: 415 DHLTVVVDLVRPISDP------GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSY 468
Query: 1113 E-LSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQIC 1162
+ L + + P SD+ A H
Sbjct: 469 DLLFKGEGFKDLVESEYP---WEM---PLDSDKEMHRAVLDRCQTAFHPTG 513
Score = 460 bits (1187), Expect = e-150
Identities = 121/553 (21%), Positives = 196/553 (35%), Gaps = 107/553 (19%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP---EEIILDEIPLFVSHIVSSDF 101
+DF++VG G+ G+ VA RL EN N TVL++EAG E+I P + +S +
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKY 63
Query: 102 NWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGK 161
+W Y T + +R P TR GK
Sbjct: 64 DWAYKTTM----VRRDDYERIEKP---------------NTR----------------GK 88
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMK---TAELKSSPY 218
+GG+S NY + G +D W G W+++ ++PY +KS
Sbjct: 89 TLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEK 148
Query: 219 HGVGGYLKIERPLW---RTPLAKCVLDAGHEMGYDIV-DPSEPNAIGFSYVLANTGNGER 274
G GG + I P + + A MG ++ + + G ++ G+R
Sbjct: 149 IGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR 208
Query: 275 YSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF-KNKQRHTVRARKEV 333
+ ++ +PN+ + +++I+E D + GV A +EV
Sbjct: 209 SGS----FLFVKNKPNITIVPEVHSKRLIINEAD--RTCKGVTVVTAAGNELNFFADREV 262
Query: 334 ILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLK-VGYNLQDHVSMAGLVFLVNDSVT 392
ILS G +P+LLMLSGIGP L I I D + VG NL DH + V V D
Sbjct: 263 ILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGFG 321
Query: 393 IVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQFQKP 452
+ ++L+ G +
Sbjct: 322 MDDVLLRHGPK-----------------------------------------------RD 334
Query: 453 RYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGS----L 508
+ Y R GP S G E + +K + G S
Sbjct: 335 AVVSAYNKNRSGPVGS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFE 393
Query: 509 RSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSR-GFVKLRSSNPFDSPKFYPNYLSD 567
+ + ++ + +V ++RP S G V L S++PF P N+ ++
Sbjct: 394 LDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFAN 453
Query: 568 SRDLDVLIEAIKM 580
D+ + E I+
Sbjct: 454 DLDIIAMREGIRF 466
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 511 bits (1318), Expect = e-169
Identities = 116/552 (21%), Positives = 202/552 (36%), Gaps = 67/552 (12%)
Query: 642 LTPSNIVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG---REESLLTD 698
+ S + + + D+I+ G G G A RLTENPN +VL++E+G + + +
Sbjct: 4 IEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIE 63
Query: 699 VPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQD 758
+ + + Y+T + ++QT G +GG++++N ++R
Sbjct: 64 DLNAYGDIFGSSVDHAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQ 118
Query: 759 FDNWEAL-GNPGWSYRDVLPYFKKSED--------ISVSRLKGSPYHGIGGYLKVE---Q 806
D+WE + GN GW++ +V Y ++E I+ + HG+ G +
Sbjct: 119 VDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDT 178
Query: 807 TSWRTPLSAAFLEAGSELGYDQVD--HCENPIGFSYVLANKIR-GARQSASKAFIRPIRK 863
+P+ A + A + G C +P G S R A++ ++ P +
Sbjct: 179 GDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQ 238
Query: 864 RHNLKVAKEARVTKILIDP--ITKRTYGVEF-SKNRKSYTVKCRKEVILSAGTLNSPQLL 920
R NL+V V K+L+ T R GVEF + ++ V + EV+L+AG+ SP +L
Sbjct: 239 RPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298
Query: 921 MLSGVGPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRY--- 977
SG+G + LE L I + DL VG N+QD A + + S+ +
Sbjct: 299 EYSGIGMKSILEPLGIDTVVDLPVGLNLQDQT-TATVRSRITSAGAGQGQAAWFATFNET 357
Query: 978 LMDFLVNGAGPLTLPGG------AEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSL 1031
D+ L F+ T + + S
Sbjct: 358 FGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLI--QYENYRDWIVNHNVAYSE--- 412
Query: 1032 RKVLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPF-DSPKF 1090
S + P +RG+V + +P+ +
Sbjct: 413 ---------------LFLDTAGVASFDVWDLLPFTRGYVH-------ILDKDPYLHHFAY 450
Query: 1091 YPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAA 1150
P Y + DL A ++A +S + AMQ Y + PG W
Sbjct: 451 DPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYI 507
Query: 1151 RQLTTNLHHQIC 1162
+H +
Sbjct: 508 PYHFRPNYHGVG 519
Score = 469 bits (1208), Expect = e-153
Identities = 111/555 (20%), Positives = 177/555 (31%), Gaps = 118/555 (21%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILD---EIPLFVSHIVSSDF 101
D+I+ G G G A RLTEN N +VL++E+G E E I S
Sbjct: 17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSV 76
Query: 102 NWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGK 161
+ Y T NQ G +GG+++ N +TR D W
Sbjct: 77 DHAYETV-----ELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWET------- 124
Query: 162 VMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSED--------MKTAEL 213
GN GW+++ V Y ++E +
Sbjct: 125 -------------------------VFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHY 159
Query: 214 KSSPYHGVGGYLKIERP---LWRTPLAKCVLDAGHEMGYDIV-DPSEPNAIGFSYVLANT 269
++ HGV G + +P+ K ++ A + G D + G S
Sbjct: 160 FNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTL 219
Query: 270 G-NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF-KNKQRHTV 327
+ R A+R +L P +RPNL+V V KVL+ +N RA GVEF H V
Sbjct: 220 HEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNV 279
Query: 328 RARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLV 387
A+ EV+L+AG+ SP +L SGIG + LE + I + DL VG NLQD A + +
Sbjct: 280 YAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQT-TATVRSRI 338
Query: 388 NDSVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVES 447
+
Sbjct: 339 TSAGAGQGQA------------------------------------------AWFATFNE 356
Query: 448 QFQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGS 507
F + + ++ + + +
Sbjct: 357 TFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTT--ALLIQYENYRDW------------ 402
Query: 508 LRSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPF-DSPKFYPNYLS 566
++ + + + L PF+RG+V + +P+ + P Y
Sbjct: 403 ---IVNHNVAYSELFLDTA---GVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFL 456
Query: 567 DSRDLDVLIEAIKMC 581
+ DL A ++
Sbjct: 457 NELDLLGQAAATQLA 471
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 456 bits (1177), Expect = e-149
Identities = 132/514 (25%), Positives = 218/514 (42%), Gaps = 71/514 (13%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE-ESLLTDVPLFVSYMVDTDFNWG 714
D +++G GS GS++A RL+E+P+ VLL+EAG E P + ++W
Sbjct: 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWD 75
Query: 715 YKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNW-EALGNPGWSYR 773
Y+TE G + + +W RG+ +GG+S ++ M Y RG P DF W +A G+ W +
Sbjct: 76 YRTEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWD 131
Query: 774 DVLPYFKKSEDISVSRLKGSPYHGIGGYLKVE-QTSWRTPLSAAFLEAGSELGYDQVDHC 832
++LP F+ ED L G HG GG L + +PL+ AF+EAG+ LG +++
Sbjct: 132 ELLPVFQAIED---HPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 833 --ENPIGFSYVLANKIRGARQSASKAFIRP-IRKRHNLKVAKEARVTKILIDPITKRTYG 889
IG + N G R +A+ A++ +R R NL + +RV ++ ++ +
Sbjct: 189 NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRS 246
Query: 890 VEFSKNRKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNM 948
+E + S V +++L AG L SP LLM SG+GP L+ + + D+ +G N+
Sbjct: 247 LEVVGRQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNL 305
Query: 949 QDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAED 1008
QDHL AG ++ KP P + +E++A+
Sbjct: 306 QDHLLGAGNLY-----------AARKP-----------VPPSRLQHSESMAYMRADSFTA 343
Query: 1009 PNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRG 1068
P++ + G + +S + A AYS++ + P SRG
Sbjct: 344 AGQPEIVVGCGVAPIVSESFPAP------------------AAGSAYSLLFGITHPTSRG 385
Query: 1069 FVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLL 1128
VR + D P YL RD + A++ + + + + + L
Sbjct: 386 SVR-------ISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL 438
Query: 1129 PVKFPGCEPYEFRSDEYWACAARQLTTNLHHQIC 1162
PG S + HH
Sbjct: 439 ---LPGTP----NSAAEMDDFIARSVITHHHPCG 465
Score = 420 bits (1082), Expect = e-135
Identities = 130/541 (24%), Positives = 206/541 (38%), Gaps = 138/541 (25%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILD-EIPLFVSHIVSSDFNW 103
A D ++VG GS GS++A RL+E+ + VLL+EAG E D P + ++W
Sbjct: 15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDW 74
Query: 104 GYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVM 163
Y TE G + +W RG+++GG+S + M Y RG P D+ W
Sbjct: 75 DYRTEAQ----AGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVD--------- 121
Query: 164 GGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGG 223
A G+ W ++E+LP F+ ED L HG GG
Sbjct: 122 -----------------------ASGDRRWGWDELLPVFQAIED---HPLGGDGIHGKGG 155
Query: 224 YLKIERPL-WRTPLAKCVLDAGHEMGYDIV-DPSEPNAIGFSYVLANTGNGERYSASRAF 281
L I P +PLA+ ++AG +G + + IG + N +G R +A+ A+
Sbjct: 156 PLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAW 215
Query: 282 LRP-IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGAL 340
L +R R NL + +RV ++ ++ + +E + V A +++L AGAL
Sbjct: 216 LTKAVRGRKNLTILTGSRVRRLKLEG----NQVRSLEVVGRQGSAEVFAD-QIVLCAGAL 270
Query: 341 NSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLVNDSVTIVELLMLS 400
SP LLM SGIGP D L+ + + D +
Sbjct: 271 ESPALLMRSGIGPHDVLDAAGVGCLID-------------------------------MP 299
Query: 401 GIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQFQKPRYIVDYWF 460
+G NLQDH+ AG + Y
Sbjct: 300 D-------------------IGRNLQDHLLGAGNL----------------------YAA 318
Query: 461 RRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGISDKFYR 520
R+ P + +E+MA + + +P+I + G + +S +
Sbjct: 319 RKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAP------------ 366
Query: 521 KVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKM 580
AY+++ I P SRG V++ D P YL RD + A++
Sbjct: 367 ------AAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEA 420
Query: 581 C 581
Sbjct: 421 S 421
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 443 bits (1143), Expect = e-144
Identities = 130/526 (24%), Positives = 222/526 (42%), Gaps = 85/526 (16%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG-REESLLTDVPLFVSY-MVDTDFN 712
++E+D+IV+G GS G+ +A RL+E+P +V L+EAG + + + L ++++ ++
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYD 70
Query: 713 WGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEA-LGNPGWS 771
W Y E E M R K MGG S N + +D D WEA G GW+
Sbjct: 71 WDYPIEPQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 772 YRDVLPYFKKSEDISVSRLKG---SPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYDQ 828
P +K+ E +P+HG G + + + P A L+A + G +
Sbjct: 126 AEAAWPLYKRLET----NEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR 181
Query: 829 VD------HCENPIGFSYVLAN-KIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILID 881
G ++ N + G R S+S ++I PI ++ N + R +++ D
Sbjct: 182 AKFNTGTTVVN---GANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD 238
Query: 882 PITKRTYGVEFSKNR--KSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVI 939
+R GV+ + ++ + R EV+LS G +++P+LLMLSG+GP HL E I V+
Sbjct: 239 A-DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVL 297
Query: 940 QDLK-VGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEAL 998
D VG ++QDH + F + +++ E
Sbjct: 298 VDSPGVGEHLQDHP-EGVVQFEAKQPMVAESTQW----------------------WEIG 334
Query: 999 AFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPFAEREAYSIV 1058
F T + + PD+ + +G ++ +S+
Sbjct: 335 IF--TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTE----------------NGFSLT 376
Query: 1059 PVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSD--SRDLDVLIEAIKMAVELSE 1116
P + RSRG VR LRS + D P P Y +D D+ V++ I+ A E++
Sbjct: 377 PNVTHARSRGTVR-------LRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAA 429
Query: 1117 TRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTNLHHQIC 1162
AM ++ + L PG E ++DE R+ ++H +
Sbjct: 430 QPAMAEWTGREL---SPGV---EAQTDEELQDYIRKTHNTVYHPVG 469
Score = 408 bits (1051), Expect = e-130
Identities = 127/544 (23%), Positives = 203/544 (37%), Gaps = 141/544 (25%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI-ILDEIPL-FVSHIVSSDFNW 103
E+D+IVVG GS G+ VA RL+E+ +V L+EAGP++ + + + L ++ S ++W
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 104 GYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVM 163
Y E + N R KVMGG S N + D D W A
Sbjct: 72 DYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEA--------- 117
Query: 164 GGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGG 223
G GW+ E P +K+ E + A +P+HG G
Sbjct: 118 -----------------------KYGATGWNAEAAWPLYKRLETNEDAG-PDAPHHGDSG 153
Query: 224 YLKIERPLWRTPLAKCVLDAGHEMGYDIVDP--SEPNAIGFSYVLANT-GNGERYSASRA 280
+ + + P +LDA + G G ++ N +G R S+S +
Sbjct: 154 PVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVS 213
Query: 281 FLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNK--QRHTVRARKEVILSAG 338
++ PI ++ N + R +++ D + +R TGV+ + H + AR EV+LS G
Sbjct: 214 YIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 339 ALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLVNDSVTIVELLM 398
A+++P+LLMLSGIGP HL E I V+ D
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVD------------------------------- 299
Query: 399 LSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQFQKPRYIVDY 458
G VG +LQDH + F + +Q+
Sbjct: 300 SPG-------------------VGEHLQDHP-EGVVQFEAKQPMVAESTQW--------- 330
Query: 459 WFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGISDKF 518
E + E+ RPD+ + +G ++ G
Sbjct: 331 -------------WEIGIFTPT--EDGLDRPDLMMHYGSVPFDMNTLR-----HGYPTTE 370
Query: 519 YRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSD--SRDLDVLIE 576
+++ P + SRG V+LRS + D P P Y +D D+ V++
Sbjct: 371 N-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVA 419
Query: 577 AIKM 580
I+
Sbjct: 420 GIRK 423
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus
dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Length = 536
Score = 438 bits (1129), Expect = e-142
Identities = 118/519 (22%), Positives = 183/519 (35%), Gaps = 91/519 (17%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWG 714
E YD++++G G+ G +A L+E + VL+LE G + +V ++ +
Sbjct: 24 EGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDD 81
Query: 715 YKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALGNPGWSYRD 774
KT R +S+ + RG+ +GGTS+IN VY+R + W
Sbjct: 82 GKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDL 133
Query: 775 VLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSELGYDQ-VDHCE 833
V ++ ED Y SW++ AFLEAG + +DH E
Sbjct: 134 VNQTYEWVED-------TIVYKPNSQ-------SWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 834 NPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPIT-KRTYGVEF 892
G + + A+ + +NL+V A V KI+ GV +
Sbjct: 180 ---GTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIY 235
Query: 893 SKNRKSY---TVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEELNIPVIQDLK-VGYNM 948
+ + V+ + EVI+SAGT+ +PQLL+LSGVGP +L LNIPV+ VG +
Sbjct: 236 RDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 949 QDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAED 1008
D+ + L + + + T DF L
Sbjct: 296 HDNP-RNFINILPPNPIEP--TIVTVLGISNDFYQCSFSSLP------------------ 334
Query: 1009 PNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVYRPFAEREAYSIVPVLVRPRSRG 1068
F P + P + P S G
Sbjct: 335 --FTTPPFGFFPSS-----------------------SYPLPNSTFAHFASKVAGPLSYG 369
Query: 1069 FVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLL 1128
+ L SSN SP NY S+ DL + +K EL T A++ Y + L
Sbjct: 370 SLTLK------SSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDL 423
Query: 1129 PVKFPGCE-----PYEFRSDEYWACAARQLTTNLHHQIC 1162
P P + D + R+ + H
Sbjct: 424 PGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHG 462
Score = 384 bits (988), Expect = e-121
Identities = 99/541 (18%), Positives = 156/541 (28%), Gaps = 164/541 (30%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWG 104
YD+++VG G+ G +A L+E + VL+LE G + + +
Sbjct: 24 EGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDD 81
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
T + + + RG+V+GGTS+ N VY R Y
Sbjct: 82 GKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGV---------- 127
Query: 165 GTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGGY 224
W + V ++ ED + Y
Sbjct: 128 ---------------------------DWDMDLVNQTYEWVED-------TIVYKPNSQ- 152
Query: 225 LKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASRAFLRP 284
W++ L+AG + S + G + N A+ L
Sbjct: 153 ------SWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNKGTRHAADELLNK 203
Query: 285 IRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF---KNKQRHTVRARKEVILSAGALN 341
NL+V A V K++ N ATGV + + VR++ EVI+SAG +
Sbjct: 204 -GNSNNLRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG 261
Query: 342 SPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLVNDSVTIVELLMLSG 401
+PQLL+LSG+
Sbjct: 262 TPQLLLLSGV-------------------------------------------------- 271
Query: 402 IGPRDHLEEMNIPVIEDLK-VGYNLQDHVSMAGLVFLVNDSVTIVESQFQKPRYIVDYWF 460
GP +L +NIPV+ VG L D+ + L + +
Sbjct: 272 -GPESYLSSLNIPVVLSHPYVGQFLHDNP-RNFINILPPNPIE----------------- 312
Query: 461 RRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSNGSLRSLLGISDKFYR 520
P + F F P + N +
Sbjct: 313 ----PTIVTVLGISNDFYQCSFS-SLPFTTPPFGFFPSSSYPLPNST------------- 354
Query: 521 KVYQPYFERQAYNIVPLILRPFSRGFVKLRSS-NPFDSPKFYPNYLSDSRDLDVLIEAIK 579
+ + P S G + L+SS N SP NY S+ DL + +K
Sbjct: 355 ----------FAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMK 404
Query: 580 M 580
Sbjct: 405 K 405
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB:
1naa_A*
Length = 546
Score = 381 bits (982), Expect = e-120
Identities = 104/546 (19%), Positives = 177/546 (32%), Gaps = 105/546 (19%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE-ESLLTDVP----LFVSYMVDT 709
YD+I++GAG GG + A+RL+E VLLLE G S +
Sbjct: 5 ATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKF 63
Query: 710 D---FNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALG 766
D T+ + + G +GG + +N +Y DF
Sbjct: 64 DIPGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----S 114
Query: 767 NPGW--SYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLSAAFLEAGSEL 824
+ GW S+ + PY K RL + + G +EQ+ +S G
Sbjct: 115 SVGWPSSWTNHAPYTSKLSS----RLPSTDHPSTDGQRYLEQS--FNVVSQLLKGQGYNQ 168
Query: 825 -------GYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTK 877
Y F Y + + G R +++ R N V+
Sbjct: 169 ATINDNPNYKD----H---VFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSN 221
Query: 878 ILIDPITKRTYGVEFSKN----RKSYTVKCRKEVILSAGTLNSPQLLMLSGVGPRPHLEE 933
++ + + GV+ + V + VILSAG + ++L SG+GP ++
Sbjct: 222 VVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 934 LNIPVIQDLK-----------VGYNMQDHLSMAGLVFLVNSSVTIVES----KYTKPRYL 978
+ VG N QD+ S+ LVF S +P
Sbjct: 280 VQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVFTHPSIDAYENWADVWSNPRPADA 338
Query: 979 MDFLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGIS 1038
+L N +G G + L F+ D + PGA + +S
Sbjct: 339 AQYLANQSGVFA--GASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSS---------- 386
Query: 1039 DKFYNKVYRPFAEREAYSI-VPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSD 1097
P+ + ++I V + +SRG + + + P +L +
Sbjct: 387 --------LPYNASQIFTITVYLSTGIQSRGRIG-------IDA--ALRGTVLTPPWLVN 429
Query: 1098 SRDLDVLIEAIKMAV-ELSETRAMQKYASKLLPVKFPGCEPYEFRSDEYWACAARQLTTN 1156
D VL++A+ V + + P ++ E + A T N
Sbjct: 430 PVDKTVLLQALHDVVSNIGSIPGLTMIT------------PDVTQTLEEYVDAYDPATMN 477
Query: 1157 LHHQIC 1162
+H +
Sbjct: 478 SNHWVS 483
Score = 379 bits (975), Expect = e-119
Identities = 101/556 (18%), Positives = 158/556 (28%), Gaps = 138/556 (24%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP----EEIILDEIPLFVSHIVSSD 100
A YD+I+VG+G GG + A+RL+E VLLLE G + P S ++
Sbjct: 5 ATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKF 63
Query: 101 ----FNWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPK 156
T+ + G ++GG + N +Y D+
Sbjct: 64 DIPGLFESLFTDSN----PFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV--- 116
Query: 157 IPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSS 216
GW S+ PY K L S+
Sbjct: 117 ---------------------------GWP------SSWTNHAPYTSKLSS----RLPST 139
Query: 217 PYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAI---GFSYVLANTGNGE 273
+ G + V GY+ ++ F Y + NG+
Sbjct: 140 DHPSTDG------QRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGK 193
Query: 274 RYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEF----FKNKQRHTVRA 329
R +L+ RPN V+ V+ + + GV+ V
Sbjct: 194 RAGPVATYLQTALARPNFTFKTNVMVSNVVRNG----SQILGVQTNDPTLGPNGFIPVTP 249
Query: 330 RKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLVND 389
+ VILSAGA + ++L SGIGP D ++ + + Q
Sbjct: 250 KGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQW------------- 296
Query: 390 SVTIVELLMLSGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQ- 448
+L VG N QD+ S+ LVF
Sbjct: 297 ---------------------------INLPVGMNAQDNPSI-NLVFTHPSIDAYENWAD 328
Query: 449 ---FQKPRYIVDYWFRRQGPYTSPGGAETMALISSKFENDKTRPDIELVFGPGALTGDSN 505
+P Y + G + S +D + PGA
Sbjct: 329 VWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYS--GSDGFTRYAQGTVRPGAA----- 381
Query: 506 GSLRSLLGISDKFYRKVYQPYFERQAYNI-VPLILRPFSRGFVKLRSSNPFDSPKFYPNY 564
Y Q + I V L SRG + + + P +
Sbjct: 382 ----------SVNSSLPYNAS---QIFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPW 426
Query: 565 LSDSRDLDVLIEAIKM 580
L + D VL++A+
Sbjct: 427 LVNPVDKTVLLQALHD 442
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 121 bits (304), Expect = 7e-29
Identities = 55/329 (16%), Positives = 98/329 (29%), Gaps = 53/329 (16%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWG 104
+V+G+G G +V A RL E + L+LE G +++ D
Sbjct: 3 GGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
+ +T+ P G + V + GV + + G+ +G
Sbjct: 62 WFKNRTE------------APLGSFLWLDVVNRNIDPYAGVLDRVNYDQMS-VYVGRGVG 108
Query: 165 GTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGGY 224
G S+ N + ++ S E YF ++ M V
Sbjct: 109 GGSLVNGGMAVEPKRSYFEEIL---PRVDSSEMYDRYFPRANSM----------LRVNHI 155
Query: 225 L-KIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTG------------- 270
K A+ + + G V PN F Y+
Sbjct: 156 DTKWFEDTEWYKFARVSREQAGKAGLGTVFV--PNVYDFGYMQREAAGEVPKSALATEVI 213
Query: 271 ---NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF----KNKQ 323
N + S + +L + + +V + ++ A VE K
Sbjct: 214 YGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDG--GYALTVEQKDTDGKLLA 271
Query: 324 RHTVRARKEVILSAGALNSPQLLMLSGIG 352
+ R + L AG+L S +LL+ +
Sbjct: 272 TKEISCR-YLFLGAGSLGSTELLVRARDT 299
Score = 119 bits (299), Expect = 3e-28
Identities = 58/339 (17%), Positives = 103/339 (30%), Gaps = 55/339 (16%)
Query: 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTD------ 710
+VIG G G +V A RL E L+LE G+ + M++ D
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 711 ----------FNWGYKTEKDERFCRGMSDQT----CNWPRGKAMGGTSVINYMVYSRGVP 756
F W ++ G+ D+ + G+ +GG S++N +
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 757 QDFDNWEALGNPGWSYRDVLPYFKKSEDIS-VSRLKGSPYHGIGGYLKVE---------- 805
F+ S YF ++ + V+ + + Y
Sbjct: 124 SYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAG 180
Query: 806 QTSWRTPLSAAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPIRKRH 865
+ P F E +V Y +QS K ++
Sbjct: 181 LGTVFVPNVYDFGYMQREAA-GEVPKSALATEVIY----GNNHGKQSLDKTYLAAALGTG 235
Query: 866 NLKVAKEARVTKILIDPITKRTYGVEFS----KNRKSYTVKCRKEVILSAGTLNSPQLLM 921
+ + +V I VE K + + CR + L AG+L S +LL+
Sbjct: 236 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLV 294
Query: 922 LSG-VGPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVF 959
+ G P+L + +VG + ++
Sbjct: 295 RARDTGTLPNL---------NSEVGAGWGPNGNIMTARA 324
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 118 bits (295), Expect = 3e-27
Identities = 57/384 (14%), Positives = 106/384 (27%), Gaps = 34/384 (8%)
Query: 31 LLTPSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIP 90
L P VP + +YD ++VGSG G A L + + V + + G + L
Sbjct: 33 LPGPDKKVPGMD---IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGA 88
Query: 91 LFVSHIVSSDFNWGYTTEK-----TDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGV 145
+ + + + + P V N +
Sbjct: 89 HKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDP 148
Query: 146 PHDYDGWAAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKS 205
+ G A +V+GG S R E + K+
Sbjct: 149 LRNLSGQAV-----TRVVGGMSTAWTCATPRFDREQRPLLVKDDA-DADDAEWDRLYTKA 202
Query: 206 EDMKTAELKSSPYHGVGGYLKIERPLWRTPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYV 265
E Y G E L K L ++ D A S
Sbjct: 203 E----------SYFQTGTDQFKESIRHNLVLNK--LTEEYKGQRD-FQQIPLAATRRSPT 249
Query: 266 LANTGNGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFF--KNKQ 323
+ + + +V+ + + + +
Sbjct: 250 FVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALN--SEIESLHIHDLISGD 307
Query: 324 RHTVRARKEVILSAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGL 383
R ++A +L+AGA+++ QLL+ SG G N P + +G + + +
Sbjct: 308 RFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQ 365
Query: 384 VFLVNDSVTIVELLMLSGIGPRDH 407
+ + + V+ M P +
Sbjct: 366 TVMSTELIDSVKSDMTIRGTPGEL 389
Score = 101 bits (253), Expect = 4e-22
Identities = 47/396 (11%), Positives = 101/396 (25%), Gaps = 57/396 (14%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWG 714
+ +YD +++G+G G A L + V + + G +S L + +
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDK 102
Query: 715 YKTEKDERFCR---------------------------------GMSDQTCNWPRGKAMG 741
+ + + +G
Sbjct: 103 FVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVG 162
Query: 742 GTSVINYMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGY 801
G S R + + + K+E Y G
Sbjct: 163 GMSTAWTCATPRFDREQRPLLVKDDADA-DDAEWDRLYTKAE----------SYFQTGTD 211
Query: 802 LKVEQTSWRTPLSAAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPI 861
E S R L L + D S +
Sbjct: 212 QFKE--SIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTD 269
Query: 862 RKRHNLKVAKEARVTKILIDPITKRTYGVEF--SKNRKSYTVKCRKEVILSAGTLNSPQL 919
+ +++ + + + + + +K +L+AG +++ QL
Sbjct: 270 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQL 328
Query: 920 LMLSGVGPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKYT------ 973
L+ SG G N P + +G + + + + + V+S T
Sbjct: 329 LVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPG 387
Query: 974 KPRYLMDFLVNGAGPLTLPGGAEALAFYPTKYAEDP 1009
+ Y + + + E + + ++ EDP
Sbjct: 388 ELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDP 423
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 115 bits (289), Expect = 6e-27
Identities = 54/327 (16%), Positives = 95/327 (29%), Gaps = 54/327 (16%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWG 104
+ +V+GSG GG+V A RLT+ + ++E G +++ D
Sbjct: 9 GDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSM 67
Query: 105 YTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRGVPHDYDGWAAPKIPTGKVMG 164
+ +KTD N + +G V + G+ +G
Sbjct: 68 WLADKTDQPVSNFMGFGINKSIDRYVG--------VLDSERFSGIKVYQ------GRGVG 113
Query: 165 GTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAELKSSPYHGVGGY 224
G S+ N + + ++ S E YF ++ GV
Sbjct: 114 GGSLVNGGMAVTPKRNYFEEIL---PSVDSNEMYNKYFPRANTG----------LGVNNI 160
Query: 225 LKIERPLWR-TPLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTG------------- 270
+ A+ G+ PN F Y+
Sbjct: 161 DQAWFESTEWYKFARTGRKTAQRSGFTTAFV--PNVYDFEYMKKEAAGQVTKSGLGGEVI 218
Query: 271 ---NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEF----FKNKQ 323
N + S + +L L + RVTKV + +E
Sbjct: 219 YGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGS--GYSVTMEQIDEQGNVVA 276
Query: 324 RHTVRARKEVILSAGALNSPQLLMLSG 350
V A V +AG++ + +LL+
Sbjct: 277 TKVVTAD-RVFFAAGSVGTSKLLVSMK 302
Score = 104 bits (259), Expect = 3e-23
Identities = 68/414 (16%), Positives = 127/414 (30%), Gaps = 74/414 (17%)
Query: 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLFVSYMVDTDFNW--- 713
+VIG+G GG+V A RLT+ ++E GR M++ D
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 714 ------------GYKTEKDERFCRGMSDQT----CNWPRGKAMGGTSVINYMVYSRGVPQ 757
G+ K G+ D +G+ +GG S++N +
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 758 DFDNWEALGNPGWSYRDVLPYFKKSEDIS-VSRLKGSPYHGIGGYLKVEQTSWRTPLSAA 816
F+ S YF ++ V+ + + + +++ +
Sbjct: 130 YFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWF----------ESTEWYKFART 176
Query: 817 FLEAGSELGYDQVDHCENPIGFSYVLAN----------------KIRGARQSASKAFIRP 860
+ G+ N F Y+ ++S K ++
Sbjct: 177 GRKTAQRSGFTTAFVP-NVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQ 235
Query: 861 IRKRHNLKVAKEARVTKILIDPITKRTYGVEFS----KNRKSYTVKCRKEVILSAGTLNS 916
L + RVTK+ + + +E + V V +AG++ +
Sbjct: 236 AAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGT 294
Query: 917 PQLLMLSGV-GPRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKY-TK 974
+LL+ G P+L VG ++ ++ +V N SK T
Sbjct: 295 SKLLVSMKAQGHLPNLSSQ---------VGEGWGNNGNI--MVGRANHMWDATGSKQATI 343
Query: 975 PRYLMDFLVNGAGPLT-----LPGGAEALAFYPTKYAEDPNHPDMEIVFGPGAL 1023
P +D + P+ LP G E ++P + G G +
Sbjct: 344 PTMGIDNWADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTGKV 397
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 2e-14
Identities = 106/615 (17%), Positives = 189/615 (30%), Gaps = 151/615 (24%)
Query: 10 FIVGAQGQVFRRIV----DRIIKDNLLTPSDAVPD-LKSF--AEEYDFIVVGSGSGGSVV 62
F G ++ I+ D + + D V D KS EE D I+ S +V
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDN--FDCKD-VQDMPKSILSKEEIDHII---MSKDAVS 62
Query: 63 ANRLTENSNWTVLLLEAGPEEIILDEIPLFVSHIVSSDFNWGYTTEKTDGICKGMKNQRC 122
L + EE++ FV ++ ++ + + KT+ M +
Sbjct: 63 GTLRL------FWTLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 123 NWPRGKVMGGTSV-TNYMVYTRGVPHDYDGWAAPKI--------PTGKV----MGG---T 166
R ++ V Y V +R P+ K+ P V + G T
Sbjct: 113 IEQRDRLYNDNQVFAKYNV-SRLQPYL-------KLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 167 SVTNYMVYTRGVPHDYDG---WAALGNIGWSFEEVLP-----YFKKSEDMKTAELKSS-- 216
V + + V D W L N S E VL ++ + + SS
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 217 PYHGVGGYLKIERPLWRTPLAKC--VLDAGHEMGYDIVDPSEPNAIGFS-YVLANTGNGE 273
++ R L P C VL ++ + NA S +L T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL-------NVQNAKAWNAFNLSCKILLTT---- 272
Query: 274 RYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEV 333
R+ F L A ++ L + L +
Sbjct: 273 RFKQVTDF---------LSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 334 ILSAGALNSPQLLMLSGIGPR--------DHLEEMNIPVIQD-LKVGYNLQDHVSMAGL- 383
+L+ +P LS I D+ + +N + ++ N+ + +
Sbjct: 322 VLT----TNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 384 ----VFLVNDSVTI-VELLML--SGIGPRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVF 436
VF S I LL L + D + +N L + +S+ +
Sbjct: 376 DRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 437 LVNDSV--------TIVESQFQKPR----------YIVDYWFRRQGPY--TSPGGAETMA 476
+ + +IV+ + P+ Y+ Y++ G + + E M
Sbjct: 434 ELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMT 491
Query: 477 LISSKFEND-----KTRPDIELVFGPGALTGDSNGSLRSLLGISD-KFYRKVY----QPY 526
L F + K R D + +++GS+ + L KFY+ Y P
Sbjct: 492 LFRMVFLDFRFLEQKIRHD--------STAWNASGSILNTL--QQLKFYKP-YICDNDPK 540
Query: 527 FERQAYNIVPLILRP 541
+ER I+ + +
Sbjct: 541 YERLVNAILDFLPKI 555
Score = 61.0 bits (147), Expect = 2e-09
Identities = 86/630 (13%), Positives = 179/630 (28%), Gaps = 199/630 (31%)
Query: 181 DYDGWAALGNIGWSFEEVLPYFKKS----------EDMKTAELKSSPYHGVGGYLKIERP 230
D++ G + ++++L F+ + +DM + L + + +
Sbjct: 8 DFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDA 60
Query: 231 LWRTP-LAKCVLDAGHEMGYDIVDPS-EPNAIGFSYVLANTGNGERYSASRAFL-RPIRK 287
+ T L +L EM V+ N Y FL PI+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----------------YK----FLMSPIKT 100
Query: 288 RPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAGALNSPQLLM 347
+ + +T++ I++ D L + F + + R + + L
Sbjct: 101 EQR----QPSMMTRMYIEQRDRLYN--DNQVFA--KYNVSRLQPYLKL------------ 140
Query: 348 LSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAG-----LVFLVNDSVTIVELLMLSGI 402
R L E L+ N+ + G + V S V+ M I
Sbjct: 141 ------RQALLE--------LRPAKNVLID-GVLGSGKTWVALDVCLSYK-VQCKMDFKI 184
Query: 403 -----G----PRDHLEEMNIPVIEDLKVGYNLQDHVSMAGLVFLVNDSVTIVESQFQKPR 453
P LE + + + + DH + + ++ + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKP 242
Query: 454 Y----IV--DYWFRRQGPYTSPGGAETMA-----LISSK------FENDKTRPDIELVFG 496
Y +V + + L++++ F + T I L
Sbjct: 243 YENCLLVLLNVQ--------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 497 PGALTGD-SNGSLRSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPF 555
LT D L L + R+ P L + +R +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLP--------REVLTTNPRRLSIIAE---SIR--DGL 341
Query: 556 DSPKFYPNYLSD------SRDLDVLIEAI-----KMCALF-------SLVCHLLVLSVAH 597
+ + + D L+VL A ++F +++ L+ V
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 598 AQSQLFRTECALFSLV-------------CHLLLLSVAHAQSQLFRTFINMVS------K 638
+ + + +SLV +L L + L R+ ++ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 639 DAILTP--------------SNIVQDTKI--FEKEY-DFIVIGAGSGGSVIANRL-TENP 680
D ++ P NI ++ F + DF + ++ ++
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---------RFLEQKIRHDST 512
Query: 681 NWTVLLLEAGREESLLTDVPLFVSYMVDTD 710
W +G + L + + Y+ D D
Sbjct: 513 AWNA----SGSILNTLQQLKFYKPYICDND 538
Score = 53.7 bits (128), Expect = 4e-07
Identities = 66/440 (15%), Positives = 130/440 (29%), Gaps = 123/440 (27%)
Query: 758 DFDNWEALGNPGWSYRDVLPYFKKS----------EDISVSRLKGSPYHGIGGYLKVEQT 807
DF+ G + Y+D+L F+ + +D+ S L I
Sbjct: 8 DFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 808 SWR---------TPLSAAFLEAGSELGYDQV-----DHCENP--IGFSYVLA-NKIRGAR 850
+ R + F+E + Y + P + Y+ +++
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 851 QSASKAFIRPIRKRHNLKVA-KEARVTKILIDPITKRTYGVE-FSKN------RKSYTVK 902
Q +K + ++ L+ A E R K ++ GV K SY V+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQ 177
Query: 903 CRKE--VI-LSAGTLNSPQLLM---------LSGVGPRPHLEELNIPV-IQDLKVGYN-- 947
C+ + + L+ NSP+ ++ + NI + I ++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 948 MQDHLSMAGLVFL--VNSSVTI----VESKY---TKPRYLMDFLVNGAGPLTLPGGAEAL 998
++ L+ L V ++ + K T+ + + DFL
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--------------- 282
Query: 999 AFYPTKYAEDPNHPDMEIVFGPGALTGD-SGGSLRKVLGISDKFYNKVYRPFAEREAYSI 1057
A H ++ LT D L K L + + P RE +
Sbjct: 283 -------AATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQ---DL--P---REVLTT 325
Query: 1058 VPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMAVELSET 1117
P + + + + + + + D L I+ ++ + E
Sbjct: 326 NPRRL------------SIIAESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLEP 368
Query: 1118 RAMQKYASKL--LP--VKFP 1133
+K +L P P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIP 388
Score = 52.2 bits (124), Expect = 1e-06
Identities = 94/661 (14%), Positives = 190/661 (28%), Gaps = 210/661 (31%)
Query: 623 HAQSQLFRTFINMVSKDAILTPSNIVQDTK-IFEK-EYDFIVIGAGSGGSVIANRLTENP 680
+ + F + + ++ K I K E D I+ S +V
Sbjct: 16 YQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRL--- 67
Query: 681 NWTVLLLEAGREESLLTDVPLFVSYMVDTDFNWGYKTEKDERFCRGMSDQTCNW--PRGK 738
L + +EE V FV ++ ++ + K E R S T + R +
Sbjct: 68 ---FWTLLSKQEEM----VQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDR 118
Query: 739 AMGGTSVIN-YMVYSRGVPQDFDNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHG 797
V Y V SR Q + R L + ++++ + G
Sbjct: 119 LYNDNQVFAKYNV-SR--LQPY----------LKLRQALLELRPAKNVLI--------DG 157
Query: 798 IGGYLKVEQTSWRTPLSAAFLEAGSELGYDQVDHCENPIGFSYV---------------- 841
+ G K +W ++ C+ ++
Sbjct: 158 VLGSGK----TW---VALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 842 -LANKIRGARQSASKAFIRPIRKRHNLKVAKEARVTKILIDPITKRTY----GVEFSKNR 896
L +I S S + H+++ A + ++L + V+ +K
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 897 KSYTVKCR-------KEVI--LSAGTLNSPQLLMLSGVGPRPHLEEL-----NIPVIQDL 942
++ + C+ K+V LSA T L S ++ L + QDL
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDL 318
Query: 943 K-------------VGYNMQDHLSMAG---------LVFLVNSSVTIVESKYTKPRYLMD 980
+ +++D L+ L ++ SS+ ++E + +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--- 375
Query: 981 FLVNGAGPLTLPGGAEALAFYPTKYAEDPNHPD--MEIVFGPGALTGDSGGSLRKVLGIS 1038
+ L+ +P + P + +++ V+ +
Sbjct: 376 ---------------DRLSVFP----PSAHIPTILLSLIWF--------DVIKSDVMVVV 408
Query: 1039 DKFYNK--VYRPFAEREAYSI--VPVLVRPRSRGFVRLSRGFV----KLRSSNPFDSPK- 1089
+K + V + E SI + + ++ + L R V ++ + D
Sbjct: 409 NKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 1090 -----FYPNYLSDSRDLDVLIEAIKMAVELSETRAMQKYASKLLPVKFPGCEPYEF---- 1140
FY +++ L ++ L + F + F
Sbjct: 468 YLDQYFY-SHI---------------GHHLKNIEHPERMT--LFRMVFLD---FRFLEQK 506
Query: 1141 -RSDEYWACAARQLTTNLHHQ-------ICPH----------IADAVDRRGEIMLSSPST 1182
R D A A N Q IC + I D + + E ++ S T
Sbjct: 507 IRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 1183 E 1183
+
Sbjct: 566 D 566
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 1e-11
Identities = 108/596 (18%), Positives = 188/596 (31%), Gaps = 179/596 (30%)
Query: 388 NDSVTIVELLM--LSGIGPRDHLEEMNIPVIED-LKVGYN------LQD---HVSMAGLV 435
++ T EL+ L + +E + + L + L+ H A L
Sbjct: 52 DEPTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL- 108
Query: 436 FLVNDSVTIVESQFQKPRYIVDYWFRR---QGPYTSPGGAETMALISSKFENDKTRPDIE 492
L + T+V+++ I +Y R + P+ + AL + + +
Sbjct: 109 -LQENDTTLVKTK----ELIKNYITARIMAKRPFDKKSNS---ALFRAV-GEGNAQ--LV 157
Query: 493 LVFGPGALTGDSNGSLRSLLGISDKFYRKVYQPYFERQAYNIVPLILRPFSRGFVKLRSS 552
+FG G G+++ L R +YQ Y + LI S +
Sbjct: 158 AIFG-G--QGNTDDYFEEL--------RDLYQTY----HVLVGDLIKF--SAETLSELIR 200
Query: 553 NPFDSPKFYPNYL---------SDSRDLDVLIEA------IKMCAL--FSLVCHLLVLSV 595
D+ K + L S++ D D L+ I + L + + LL +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 596 AHAQSQLFRTECALFSLVCHLLLLSVAHAQSQLFRTFINMVSKDAILTPSNIVQDTKIFE 655
+L + L+ +VA A++ + +F V K AI
Sbjct: 261 G----ELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRK-AI-------------- 300
Query: 656 KEYDFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGREESLLTD-------VPLFVSYMV 707
F IG R E PN ++ S+L D VP S M+
Sbjct: 301 -TVLFF-IGV---------RCYEAYPNTSL-------PPSILEDSLENNEGVP---SPML 339
Query: 708 DTDFNWGYKTEKDERFCRGMSDQT-------CN--WPRGKAMGGTSVIN---YMVYSRGV 755
++ + N P GK + S++N +V S G
Sbjct: 340 S---------------ISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVS-GP 382
Query: 756 PQD---FDNW-EALGNPGWSYRDVLPYFKKSEDISVSRLK-GSPYHGIGGYLK-----VE 805
PQ + P + +P+ ++ S L SP+H L +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDLIN 440
Query: 806 QTSWRTPLSAAFLEAGSELG---YDQVDHCENPIGFSYVLANKIRGARQSASKAFIRPI- 861
+ + +S ++ YD D + +R S S+ + I
Sbjct: 441 KDLVKNNVSFN----AKDIQIPVYDTFD------------GSDLRVLSGSISERIVDCII 484
Query: 862 RKRHNLKVAKEARVTKILI-DPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS 916
R + + + T IL P GV +N+ V VI+ AGTL+
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV----RVIV-AGTLDI 535
Score = 65.5 bits (159), Expect = 1e-10
Identities = 103/668 (15%), Positives = 198/668 (29%), Gaps = 220/668 (32%)
Query: 539 LRPF--SRGFVKLRSSNPFDSPKFYPNYLSDSRD--LDVLIEAIKMCAL---FSLVCHLL 591
RP S G L + S ++ +L E + A + L+
Sbjct: 6 TRPLTLSHG--SLEHVLLV-PTASFFIA-SQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 592 VLSVAHAQSQLFRTECALFSLVCHLLLLSVAHAQSQ-LFRTFINMVSKDAILTPSNIVQD 650
+ + S + ++ F +L L + ++ L I+ ++ A L N D
Sbjct: 62 GKFLGYVSSLVEPSKVGQFD---QVLNLCLTEFENCYLEGNDIHALA--AKLLQEN---D 113
Query: 651 TKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPLF------VS 704
T + + + +I ++A R + + + L G + L V +F
Sbjct: 114 TTLVKTKE---LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDD 168
Query: 705 Y---MVDTDFNWGYKTEKD--ERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDF 759
Y + D Y+T + ++ R T++ V+++G+ +
Sbjct: 169 YFEELRDL-----YQTYHVLVGDLIKFSAETLSELIR------TTLDAEKVFTQGL--NI 215
Query: 760 DNWEALGNPGWSYRDVLPYFKKSEDISVSRLKGSPYHGIGGYLKVEQTSWRTPLS----- 814
W L NP P L P S PL
Sbjct: 216 LEW--LENP-----SNTP--------DKDYLLSIPI------------SC--PLIGVIQL 246
Query: 815 AAFLEAGSELGYDQVDHCENPIGFSYVLANKIRGARQSASK---AFIRPIRKRHNLKVAK 871
A ++ LG+ + G + + + + +F +RK
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK-------- 298
Query: 872 EARVTKIL--IDPITKRTYGVEFSK--NRKSYTVKCRKEVILSAGTLNSPQLLMLSGVG- 926
+L I GV + S ++ + + + SP MLS
Sbjct: 299 ---AITVLFFI--------GVRCYEAYPNTSLPPSILEDSLENNEGVPSP---MLSISNL 344
Query: 927 PRPHLEELNIPVIQDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGA 986
+ +++ + + ++ LVN + + +V +
Sbjct: 345 TQEQVQDY----VNKTNSHLPAGKQVEIS----LVNG-----------AK---NLVV--S 380
Query: 987 GPLTLPGGAEALAFYPTKYAEDPNHPDMEIVFGPGALTGDSGGSLRKVLGISDKFYNKVY 1046
GP P +L G + +LRK S +++
Sbjct: 381 GP-------------------------------PQSLYGLNL-TLRKAKAPSGLDQSRI- 407
Query: 1047 RPFAEREAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIE 1106
PF+ER+ ++ S F L ++PF S L + DL + +
Sbjct: 408 -PFSERK----------------LKFSNRF--LPVASPFHSH-----LLVPASDL-INKD 442
Query: 1107 AIKMAVELSETRAMQKYASKL-LPVKFPGCEPYEFR--SDEYWACAARQLTTNLHHQICP 1163
+K V + A + +PV Y+ SD R L+ ++ +I
Sbjct: 443 LVKNNVSFN--------AKDIQIPV-------YDTFDGSD------LRVLSGSISERIVD 481
Query: 1164 HIA-DAVD 1170
I V
Sbjct: 482 CIIRLPVK 489
Score = 49.7 bits (118), Expect = 7e-06
Identities = 99/587 (16%), Positives = 181/587 (30%), Gaps = 193/587 (32%)
Query: 193 WSFEEVL-PYFKKSEDMKTAELK-----SSPYHGVGGYLK-IERPL------WRTPLAKC 239
+ L F K T ++P VG +L + + +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 240 VLDA-------G---HEMGYDIVDPSEPNAIGFSYVLANTGNGERYSASRAFLRPIRKRP 289
L G H + ++ ++ + ++ N +A RP K+
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-----ITARIMAKRPFDKKS 141
Query: 290 N---LKVAKRARVTKVLI-----------DE------------NDNLKRATGVEFFKNKQ 323
N + V I +E D +K + E
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELI 199
Query: 324 RHTVRARKEVILSAGALNSPQLLMLSGIGP-RDHLEEMNIPV-------IQ------DLK 369
R T+ A K + + G LN + L P +D+L ++IP+ IQ K
Sbjct: 200 RTTLDAEK--VFTQG-LNILEWLENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVVTAK 254
Query: 370 V-GYN---LQDHVS-----MAGLV-------------FLVNDSVTIVELLMLSGIGPRDH 407
+ G+ L+ ++ GLV F V+ + +L IG R +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-VRKAITVLFF--IGVRCY 311
Query: 408 LE--EMNIP--VIED-LKVGYNLQDHVSMAGLVFLVNDSVT-IVESQFQKPRYIVDYWFR 461
++P ++ED L+ + M S++ + + Q Q V+
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSP--ML--------SISNLTQEQVQD---YVNK-TN 357
Query: 462 RQGPYTSPGGAETMALISSKFENDKTRPDIELVFG-PGALTGDSNGSLRSLLGISDKFYR 520
P G ++L++ +V G P +L G N +LR S
Sbjct: 358 SHLP---AGKQVEISLVNG--------AKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQS 405
Query: 521 KVYQPYFERQAYNIVPLILRPFSRGFVKLRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKM 580
++ P+ ER+ FS F L ++PF S L + DL
Sbjct: 406 RI--PFSERKL---------KFSNRF--LPVASPFHSH-----LLVPASDL--------- 438
Query: 581 CALFSLVCHLLVLSVAHAQSQL----FRTECALFSLVCHL---LLLSVAHAQSQLFRTFI 633
+ L+ +V+ + + T S + L + + + R +
Sbjct: 439 -----INKDLVKNNVSFNAKDIQIPVYDTFDG--SDLRVLSGSISERIVD---CIIRLPV 488
Query: 634 NMVSKDAILTPSNIVQDTKIFEKEYDFIVIGAG--SGGSVIANRLTE 678
+ ++I+ DF G G SG V+ +R +
Sbjct: 489 KWETTTQ-FKATHIL----------DF---GPGGASGLGVLTHRNKD 521
Score = 43.5 bits (102), Expect = 5e-04
Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 79/195 (40%)
Query: 1043 NKVYRPFAE-REAYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNYLSDSRDL 1101
Y F E R+ Y VLV ++ S + D+ K + + L
Sbjct: 166 TDDY--FEELRDLYQTYHVLVGD----LIKFSAETLSELIRTTLDAEKVFT------QGL 213
Query: 1102 DVLIEAIKMAVELSETRAMQKY-ASKLLPVKFP-----------------GCEPYEFRS- 1142
++L +E + Y S +P+ P G P E RS
Sbjct: 214 NIL-----EWLENPSNTPDKDYLLS--IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 1143 -----------------------DEYWACAARQLTTNLH-----HQICPH-------IAD 1167
+ ++ + +T ++ P+ + D
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 1168 AVDRRGEI----MLS 1178
+++ E MLS
Sbjct: 327 SLE-NNEGVPSPMLS 340
Score = 41.6 bits (97), Expect = 0.002
Identities = 60/332 (18%), Positives = 114/332 (34%), Gaps = 110/332 (33%)
Query: 826 YDQVD-HCENPIGFSYVLANKIRGARQSASKAFI----RPIRKRHNLKVAKEARVTKILI 880
+++ D H ++ GFS + + + + + F + IR+ ++ + + K+
Sbjct: 1646 WNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 881 DPITKRTYGVEFSKNRKSYTVKCRKEVILSAGTLNS-PQLLMLSGVGPRPHLEELNIPVI 939
+ I K E +++ SYT + K + LSA T + P L ++
Sbjct: 1704 EKIFK-----EINEHSTSYTFRSEKGL-LSA-TQFTQPALTLME------------KAAF 1744
Query: 940 QDLKVGYNMQDHLSMAGLVFLVNSSVTIVESKYTKPRYLMDFLVNGAGPLTLPGGAEALA 999
+DLK + + AG S+ E Y A L A+ ++
Sbjct: 1745 EDLKSKGLIPADATFAGH------SLG--E--YA------------A----LASLADVMS 1778
Query: 1000 FYPTKYAEDPNHPDMEIVFGPGALT------GDSGGSLRKVLGISDKFYNKVYRPFAERE 1053
E +E+VF G + G S ++ I+ +V F++ E
Sbjct: 1779 I------ESL----VEVVFYRGMTMQVAVPRDELGRSNYGMIAINP---GRVAASFSQ-E 1824
Query: 1054 AYSIVPVLVRPRSRGFVRLSRGFVKLRSSNPFDSPKFYPNY--------LS-DSRDLDVL 1104
A V V R+ V + V NY + D R LD +
Sbjct: 1825 ALQYVVERVGKRTGWLVEI----V---------------NYNVENQQYVAAGDLRALDTV 1865
Query: 1105 IEA--------IKMAVELSETRAMQKYASKLL 1128
I + +EL ++ ++++ L
Sbjct: 1866 TNVLNFIKLQKIDI-IELQKSLSLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.083
Identities = 46/263 (17%), Positives = 76/263 (28%), Gaps = 88/263 (33%)
Query: 235 PLAKCVLDAGHE-----MGYDIVDPSEPNAIGFSYVLANTGNGERYSASRAFLRPIRKRP 289
A+ V + G+ I+D N + + + G + IR+
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPV--NLTIHFGGEKGKR---------IREN- 1687
Query: 290 NLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILS--AGALNSPQL-- 345
+I E + + FK H+ G L++ Q
Sbjct: 1688 ----------YSAMIFETIVDGKLKTEKIFKEINEHS----TSYTFRSEKGLLSATQFTQ 1733
Query: 346 --LMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGL-------------VFLVNDS 390
L L M +DLK + + AG V +
Sbjct: 1734 PALTL-----------MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 391 VTIVEL--LMLSGIGPRDHLEEMNIPVI-------------EDLKVGYNLQDHVSMA--G 433
V +V + + PRD L N +I E L+ + + V
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ---YVVERVGKRTGW 1839
Query: 434 LVFLVNDSVTIVESQFQKPRYIV 456
LV +VN + VE+Q Q Y+
Sbjct: 1840 LVEIVNYN---VENQ-Q---YVA 1855
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 48.1 bits (115), Expect = 2e-05
Identities = 51/308 (16%), Positives = 80/308 (25%), Gaps = 77/308 (25%)
Query: 34 PSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILDEIPLFV 93
+ + + E D +V G G G + VL+LE
Sbjct: 28 RPRSATTVTEWDYEADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSG----------- 75
Query: 94 SHIVSSDFNWGYTTEKTDGICKGMKNQRCNWPRGKVMGGT-SVTNYMVYTRGVPHDYDGW 152
WG T G + P K G S N +
Sbjct: 76 ---------WGGATALAGG---FI-YLGGGTPLQKACGFDDSPENMKTFMMAALGP---- 118
Query: 153 AAPKIPTGKVMGGTSVTNYMVYTRGVPHDYDGWAALGNIGWSFEEVLPYFKKSEDMKTAE 212
K+ Y G Y+ W L + G F+E E
Sbjct: 119 ---GADEEKI---------TDYCEGSVEHYN-W--LVDCGVPFKESFWGEPGWEPPFDDG 163
Query: 213 LKSSPYHGVGGYLKIERPLWRT--PLAKCVLDAGHEMGYDIVDPSEPNAIGFSYVLANTG 270
L S + +I P R P GY ++ P
Sbjct: 164 LMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKP---------------- 207
Query: 271 NGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRAR 330
L ++ ++ RV ++ D+ R G+ + + VRAR
Sbjct: 208 -----------LVETAEKLGVRAEYDMRVQTLVTDDTG---RVVGIVAKQYGKEVAVRAR 253
Query: 331 KEVILSAG 338
+ V+L+ G
Sbjct: 254 RGVVLATG 261
Score = 34.2 bits (79), Expect = 0.28
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 847 RGARQSASKAFIRPIRK---RHNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKC 903
R + ++P+ + + ++ + RV ++ D T R G+ + K V+
Sbjct: 194 RTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGKEVAVRA 252
Query: 904 RKEVILSAG 912
R+ V+L+ G
Sbjct: 253 RRGVVLATG 261
Score = 30.0 bits (68), Expect = 5.3
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 636 VSKDAILTPSNIVQDTKIFEKEYDFIVIGAGSGG 669
+ + P + T+ ++ E D +V G G G
Sbjct: 21 MVDATPIRPRSATTVTE-WDYEADVVVAGYGIAG 53
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 44.0 bits (103), Expect = 2e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLE 688
+D V+G+G G IA R+ + VL+LE
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
Score = 42.1 bits (98), Expect = 8e-04
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 41 LKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
++ +D VVGSG G +A R+ + VL+LE P
Sbjct: 1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH 42
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 43.6 bits (102), Expect = 3e-04
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 640 AILTPSNIVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
T + + K +D++++GAG GSV+A RL + VL+++
Sbjct: 12 NERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDR 60
Score = 40.9 bits (95), Expect = 0.002
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 25 RIIKDNLLTPSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
N T + + ++ +D+++VG+G GSV+A RL + VL+++ P
Sbjct: 7 PSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH 63
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 42.0 bits (97), Expect = 0.001
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 650 DTKIFEKEYDFIVIGAGSGGSVIANRLTE-NPNWTVLLLEAGREES 694
E+ +D +VIGAG G+ A L + P ++LL+E G +
Sbjct: 29 GQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN 74
Score = 36.2 bits (82), Expect = 0.067
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTE-NSNWTVLLLEAGP 81
E +D +V+G+G G+ A L + ++LL+E G
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 42.0 bits (98), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
K +++GAG G+VI +L E V +++
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQ 34
Score = 39.7 bits (92), Expect = 0.005
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
+ ++VG+G G+V+ +L E V +++
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 37
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 40.1 bits (93), Expect = 0.004
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
YD+I++G+G G+V AN L + N VL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEK 32
Score = 38.5 bits (89), Expect = 0.010
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
YD+I+VGSG G+V AN L + N VL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.9 bits (92), Expect = 0.005
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
+ D +VIGAG G A RL + + +++++
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDS 42
Score = 37.2 bits (85), Expect = 0.036
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
D +V+G+G G A RL + + +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 39.5 bits (93), Expect = 0.007
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPL 701
+ YD +VIGAGSGG V +++ + L
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAAL 47
Score = 32.9 bits (76), Expect = 0.65
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ YD +V+G+GSGG
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWN 21
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 39.4 bits (93), Expect = 0.007
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
K YD++VIG GSGG A R
Sbjct: 9 TKHYDYLVIGGGSGGVASARR 29
Score = 34.8 bits (81), Expect = 0.18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ YD++V+G GSGG A R
Sbjct: 9 TKHYDYLVIGGGSGGVASARR 29
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 39.4 bits (93), Expect = 0.007
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
YD++VIG GSGG A R
Sbjct: 18 VASYDYLVIGGGSGGLASARR 38
Score = 35.6 bits (83), Expect = 0.095
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 35 SDAVPDLKSFAEEYDFIVVGSGSGGSVVANR 65
P YD++V+G GSGG A R
Sbjct: 8 PQGPPPAAGAVASYDYLVIGGGSGGLASARR 38
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 39.0 bits (91), Expect = 0.008
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+D++V+GAG G A L +VL+++AG
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
Score = 35.9 bits (83), Expect = 0.072
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 34 PSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
S VP S +D++VVG+G G A L S +VL+++AG
Sbjct: 11 SSGLVPR-GSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 39.0 bits (92), Expect = 0.008
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
++D VIG+GSGG A
Sbjct: 24 SFDFDLFVIGSGSGGVRAARL 44
Score = 34.4 bits (80), Expect = 0.21
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 47 EYDFIVVGSGSGGSVVANR 65
++D V+GSGSGG A
Sbjct: 26 DFDLFVIGSGSGGVRAARL 44
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 38.6 bits (89), Expect = 0.009
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 657 EYDFIVIGAGSGGSVIANRLTEN-PNWTVLLLEAGRE 692
D I++GAGS G A + +N P+ V ++E+
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101
Score = 35.6 bits (81), Expect = 0.079
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENS-NWTVLLLEAGPE 82
DL FA D I+VG+GS G A + +N + V ++E+
Sbjct: 58 KDLDKFAV-SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 39.0 bits (92), Expect = 0.009
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+ +D I IG GSGG +A + V L+E+
Sbjct: 3 QHFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA 37
Score = 34.4 bits (80), Expect = 0.21
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ +D I +G GSGG VA +
Sbjct: 2 TQHFDLIAIGGGSGGLAVAEK 22
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 39.1 bits (92), Expect = 0.010
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
++ +D +VIG GSGG A
Sbjct: 4 QQSFDLLVIGGGSGGLACAKE 24
Score = 34.1 bits (79), Expect = 0.33
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 46 EEYDFIVVGSGSGGSVVANR 65
+ +D +V+G GSGG A
Sbjct: 5 QSFDLLVIGGGSGGLACAKE 24
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 38.6 bits (91), Expect = 0.010
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+YD VIG GSGG
Sbjct: 3 AFDYDLFVIGGGSGGVRSGRL 23
Score = 34.0 bits (79), Expect = 0.32
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 47 EYDFIVVGSGSGGSVVANR 65
+YD V+G GSGG
Sbjct: 5 DYDLFVIGGGSGGVRSGRL 23
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 38.4 bits (88), Expect = 0.012
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 649 QDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA----GREESLLTDVPLFVS 704
++ + YD I++G G +++ L+ +L+L+ G E + L L+ +
Sbjct: 12 ENLYFQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNLTNLYNT 70
Query: 705 YMVDTDFNWGYKTEKDERFCRG 726
+ + Y +
Sbjct: 71 FKPKENIPSKYGENRHWNVDLI 92
Score = 34.9 bits (79), Expect = 0.18
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
E YD I++G+G +++ L+ +L+L+ P
Sbjct: 19 EHYDVIILGTGLKECILSGLLSH-YGKKILVLDRNP 53
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 38.3 bits (90), Expect = 0.013
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVPL 701
K +D +VIGAGSGG V +++ L
Sbjct: 5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAAL 51
Score = 31.4 bits (72), Expect = 2.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
++ +D +V+G+GSGG
Sbjct: 5 SKAFDLVVIGAGSGGLEAGWN 25
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 38.5 bits (90), Expect = 0.014
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 587 VCHLLVLSVAHAQSQLFRTECALFSLVCHLLLLSVAHAQSQLFRTFINMVSKDAILTPSN 646
CH AH +S ++ C F + A + T + + +
Sbjct: 70 SCH-----SAHEKSMVYCDSCHSFDFN-----MPYAKKWLRDEPTIAELAKDKSERQAA- 118
Query: 647 IVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLE 688
D +V+G+G G A T++ V+L+E
Sbjct: 119 ---LASAPHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
Score = 32.7 bits (75), Expect = 0.72
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 42 KSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLE 78
+ + D +VVGSG G A T++ V+L+E
Sbjct: 121 SAPHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
Score = 32.0 bits (73), Expect = 1.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 287 KRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAG 338
+ N+ + R +VL D+ G+ + + VIL+ G
Sbjct: 266 VKRNIDLRMNTRGIEVLKDDKG---TVKGILVKGMYKGYYWVKADAVILATG 314
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 38.1 bits (89), Expect = 0.016
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
E YD +VVG G GGS A + L++E PE
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPE 38
Score = 37.7 bits (88), Expect = 0.021
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692
+ YD +V+G G GGS A + L++E E
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPE 38
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 38.0 bits (89), Expect = 0.020
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+YD I+IG GSGG A
Sbjct: 30 SYDYDLIIIGGGSGGLAAAKE 50
Score = 34.9 bits (81), Expect = 0.15
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANR 65
P+ + +YD I++G GSGG A
Sbjct: 24 PEDLPKSYDYDLIIIGGGSGGLAAAKE 50
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 37.9 bits (89), Expect = 0.021
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+YD IVIG GS G A
Sbjct: 7 SYDYDLIVIGGGSAGLACAKE 27
Score = 34.1 bits (79), Expect = 0.27
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ +YD IV+G GS G A
Sbjct: 7 SYDYDLIVIGGGSAGLACAKE 27
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 37.6 bits (88), Expect = 0.021
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 658 YDFIVIGAGSGGSVIANR 675
YD IVIG GSGG A R
Sbjct: 3 YDLIVIGGGSGGMAAARR 20
Score = 34.5 bits (80), Expect = 0.20
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 48 YDFIVVGSGSGGSVVANR 65
YD IV+G GSGG A R
Sbjct: 3 YDLIVIGGGSGGMAAARR 20
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 37.3 bits (85), Expect = 0.027
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 659 DFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+IG G G A LT V L + R
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSR 35
Score = 31.2 bits (69), Expect = 2.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 49 DFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80
++G+G G A LT V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKS 34
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 37.3 bits (87), Expect = 0.031
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+ +YD IVIG GSGG
Sbjct: 105 KYDYDLIVIGGGSGGLAAGKE 125
Score = 34.6 bits (80), Expect = 0.23
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANR 65
+ +YD IV+G GSGG
Sbjct: 99 GIVNESKYDYDLIVIGGGSGGLAAGKE 125
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 37.2 bits (86), Expect = 0.034
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 549 LRSSNPFDSPKFYPNYLSDSRDLDVLIEAIKMCALFSLVCHLLVLSVAHAQSQLFRTECA 608
+ + + D + DV++EA F + ++ A S+ E
Sbjct: 458 MGRAAHLLQCRSGVQKAEDWLNPDVVLEA------FEARALRMAVTCAKNLSKFENQEQG 511
Query: 609 LFSLVCHLLLLSVAHAQSQLFRTFINMVSKD 639
L+ L+ ++AH Q + FI + +D
Sbjct: 512 FQELLADLVEAAIAHCQLIVVSKFIAKLEQD 542
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 36.6 bits (84), Expect = 0.035
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
E D +V+GAGS G A +++NPN V ++E
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
Score = 35.8 bits (82), Expect = 0.065
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
D+ ++AE D +VVG+GS G A +++N N V ++E
Sbjct: 32 TDMITYAE-TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 36.7 bits (86), Expect = 0.040
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
K YD+I IG GSGG NR
Sbjct: 3 KHYDYIAIGGGSGGIASINR 22
Score = 34.4 bits (80), Expect = 0.25
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ YD+I +G GSGG NR
Sbjct: 2 TKHYDYIAIGGGSGGIASINR 22
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 36.7 bits (85), Expect = 0.047
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692
E +YD ++IG G GS A +L+ +LL+++
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPW 40
Score = 34.8 bits (80), Expect = 0.17
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPEEIILD 87
+YD +++G G GS A +L+ +LL+++ P I D
Sbjct: 5 LKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGD 45
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 36.5 bits (84), Expect = 0.055
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE------ESLL--TDVPLFVSYM 706
+ +D IVIG G GGS +A+ + VLLLE ESLL T +
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFPRHQIGESLLPATVHGICAMLG 63
Query: 707 VDTDFNW-GYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNW 762
+ + G+ ++ F G + + + Y V R FD+
Sbjct: 64 LTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVE-R---ARFDDM 116
Score = 35.7 bits (82), Expect = 0.10
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80
E +D IV+G G GGS +A+ + VLLLE
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLERE 39
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 36.3 bits (84), Expect = 0.060
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE------ESLL 696
++ D +VIGAG G+V A+ + ++ + V ++E + ESLL
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFPRFVIGESLL 49
Score = 35.1 bits (81), Expect = 0.12
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
E+ D +V+G+G G+V A+ + ++ + V ++E
Sbjct: 4 EKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQK 38
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 36.2 bits (84), Expect = 0.072
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 279 RAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRATGVEFFKNKQRHTVRARKEVILSAG 338
+ +++ + +RV K++++++ G + + K V+L+ G
Sbjct: 254 DTLRKAAKEQ-GIDTRLNSRVVKLVVNDDH---SVVGAVVHGKHTGYYMIGAKSVVLATG 309
Score = 35.8 bits (83), Expect = 0.085
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
+E +VVG+GS G + + V+L++ P
Sbjct: 113 AIAAGPSETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP 154
Score = 32.7 bits (75), Expect = 0.90
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 856 AFIRPIRKR---HNLKVAKEARVTKILIDPITKRTYGVEFSKNRKSYTVKCRKEVILSAG 912
I +RK + +RV K++++ G Y + K V+L+ G
Sbjct: 251 EIIDTLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVLATG 309
Score = 32.0 bits (73), Expect = 1.4
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 17/102 (16%)
Query: 587 VCHLLVLSVAHAQSQLFRTECALFSLVCHLLLLSVAHAQSQLFRTFINMVSKDAILTPSN 646
CH H + + + EC F + + + ++ +++ + +D I
Sbjct: 67 SCH-----KGHEEPKFYCNECHSFDIK------PMPFSDAKKKKSWDDGWDQDKIQKA-- 113
Query: 647 IVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLE 688
+ +V+GAGS G + + V+L++
Sbjct: 114 ---IAAGPSETTQVLVVGAGSAGFNASLAAKKA-GANVILVD 151
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 36.0 bits (83), Expect = 0.081
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
+ D +V+G G G A L ++ V++LEA GR
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGGR 42
Score = 33.7 bits (77), Expect = 0.40
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
+ + D +VVG G G A L +S V++LEA
Sbjct: 2 SNKCDVVVVGGGISGMAAAKLL-HDSGLNVVVLEA 35
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 35.6 bits (83), Expect = 0.093
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
+ D IVIGAG G IA L VL+ EA
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEA 35
Score = 29.4 bits (67), Expect = 8.2
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
+ + D IV+G+G G +A L VL+ EA
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 35.6 bits (82), Expect = 0.097
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GREESLLTDVPLFVSYMVDTD 710
K+ +IGAG G L + +LE G+ S + +
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSP--NYH---GRRYEMG 59
Query: 711 FNWG 714
G
Sbjct: 60 AIMG 63
Score = 35.2 bits (81), Expect = 0.13
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
S +++ ++G+G G L + +LE
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 35.3 bits (82), Expect = 0.13
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWT-VLLLEAG 690
K YD I++G G G A L +N T V +LE G
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
Score = 33.0 bits (76), Expect = 0.54
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWT-VLLLEAG 80
P+ K YD I+VG G G A L +N T V +LE G
Sbjct: 16 PEPKK---SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.2 bits (80), Expect = 0.13
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GREESLLTDVPLFVSYMVD 708
+ I+IGAG G A+ L +N L+LEA GR L T + D
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR---LQTV-TGYQGRKYD 60
Score = 32.8 bits (74), Expect = 0.71
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
+ I++G+G G A+ L +N L+LEA
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA 40
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 34.7 bits (79), Expect = 0.15
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 657 EYDFIVIGAGSGGSVIANRLTE-NPNWTVLLLEAGRE 692
E D +++GAGS G A L+ P+ + ++EAG
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA 115
Score = 32.4 bits (73), Expect = 0.88
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTE-NSNWTVLLLEAGPE 82
DL + AE D ++VG+GS G A L+ + + ++EAG
Sbjct: 72 ADLDAHAE-TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA 115
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.8 bits (80), Expect = 0.16
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
K +++GAG+ G+ A L V +L+
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
Score = 32.5 bits (74), Expect = 0.89
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
+ + ++VG+G+ G+ A L V +L+ P
Sbjct: 2 AVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.8 bits (80), Expect = 0.17
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
YD IV+G G G A LT VLLLE GR
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGR 39
Score = 32.1 bits (73), Expect = 1.3
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
YD IVVG G G A LT VLLLE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAG-KKVLLLEG 32
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 34.6 bits (80), Expect = 0.19
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+EYD I IG G+ G +
Sbjct: 41 PREYDAIFIGGGAAGRFGSAY 61
Score = 33.0 bits (76), Expect = 0.55
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 42 KSFAEEYDFIVVGSGSGGSVVANR 65
++ EYD I +G G+ G +
Sbjct: 38 ENDPREYDAIFIGGGAAGRFGSAY 61
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.5 bits (78), Expect = 0.21
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
++IGAG G A RLTE L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
Score = 32.9 bits (74), Expect = 0.66
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
+++G+G G A RLTE L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 34.3 bits (79), Expect = 0.22
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 657 EYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
+YD I+IG+GS G+ T VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAH 34
Score = 33.1 bits (76), Expect = 0.54
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 47 EYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
+YD I++GSGS G+ T + VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHM 35
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 34.2 bits (79), Expect = 0.24
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 658 YDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692
+D IV+GAGS G +L + LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDP 37
Score = 32.7 bits (75), Expect = 0.78
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
+ +D IVVG+GS G +L + LL++A
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP 37
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 34.4 bits (79), Expect = 0.25
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+ YD +V+G G G A ++ E VL+LE
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT 37
Score = 32.4 bits (74), Expect = 0.78
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
E YD +VVG G G A ++ E VL+LE
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.0 bits (76), Expect = 0.25
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 659 DFIVIGAGSGGSVIANRLTEN--PNWTVLLLEAGR 691
+++GAG GS+ A L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 34.2 bits (78), Expect = 0.28
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAG 80
S ++G G GSV L V + E
Sbjct: 19 SHMTRSKVAIIGGGPAGSVAGLTLH-KLGHDVTIYERS 55
Score = 33.8 bits (77), Expect = 0.37
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+IG G GSV L + V + E
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSA 56
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 34.1 bits (79), Expect = 0.29
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+ Y+ +VIG G GS IA L + N L E+G
Sbjct: 16 RHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT 50
Score = 30.3 bits (69), Expect = 3.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
+K Y+ +V+G G GS +A L + N L E+G
Sbjct: 12 RAMKR---HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT 50
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 33.9 bits (78), Expect = 0.36
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 254 PSEPNAIGFSYVLANTGNGERYSASRAFLRPIRKRPNLKVAKRARVTKVLIDENDNLKRA 313
P+ +G + KR + +RV ++L D + +
Sbjct: 247 PTGGAGVGAHVA-------------QVLWDNAVKR-GTDIRLNSRVVRILEDASG---KV 289
Query: 314 TGVEFFKNKQRHTVRARKEVILSAG 338
TGV + V V+++AG
Sbjct: 290 TGVLVKGEYTGYYVIKADAVVIAAG 314
Score = 33.2 bits (76), Expect = 0.52
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 587 VCHLLVLSVAHAQSQLFRTECALFSLVCHLLLLSVAHAQSQLFRTFINMVSKDAILTPSN 646
CH H +S + C F + + F V D
Sbjct: 73 SCH-----KGHEKSVAYCDACHSFGF-----DMPFGGKWERKFVP----VDADKAAQDKA 118
Query: 647 IVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLE 688
I ++ D ++IG+G G A + V+LLE
Sbjct: 119 IAAG---VKETTDVVIIGSGGAGLAAAVSARDA-GAKVILLE 156
Score = 32.4 bits (74), Expect = 1.1
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 35 SDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
+ E D +++GSG G A + V+LLE P
Sbjct: 114 AQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEP 159
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.6 bits (77), Expect = 0.38
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
+ D ++GAG G A L + +V ++EA GR
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGR 43
Score = 30.5 bits (69), Expect = 3.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
+ D +VG+G G A L + +V ++EA
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAG-LSVAVIEA 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.3 bits (75), Expect = 0.62
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 641 ILTPSNIVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
I +K I+IG+G G A +L V LLEA
Sbjct: 91 INFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 138
Score = 29.5 bits (65), Expect = 7.7
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 39 PDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
+ I++GSG G A +L V LLEA
Sbjct: 99 IKPLPTKKTGKVIIIGSGVSGLAAARQLQSFG-MDVTLLEA 138
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 32.6 bits (75), Expect = 0.71
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLT 697
E D++VIGAG G+ L+ + V++LE E+
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSAHGR--VVVLE---REAQPG 44
Score = 30.7 bits (70), Expect = 3.0
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
E D++V+G+G G+ L+ + V++LE +
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQ 42
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 30.9 bits (70), Expect = 0.84
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 661 IVIGAGSGGSVIANRLTENPNWTVLLLEAGREESLLTDVP 700
V+GAG G +IA L + N++V + A + + L +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTV--ADHDLAALAVLN 46
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 32.5 bits (73), Expect = 0.85
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 662 VIGAGSGGSVIANRLTENPNWTVLLLEAGREE 693
V G G+G ++ V +L +E
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVLTLFADE 38
Score = 30.2 bits (67), Expect = 4.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 52 VVGSGSGGSVVANRLTENSNWTVLLLEAGPEEI 84
V G G+G ++ V +L +E
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVLTLFADEA 39
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 32.5 bits (75), Expect = 0.86
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
E VIG+G A +
Sbjct: 2 EPPVQVAVIGSGGAAMAAALK 22
Score = 30.2 bits (69), Expect = 5.0
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
V+GSG A +
Sbjct: 2 EPPVQVAVIGSGGAAMAAALK 22
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 32.6 bits (74), Expect = 0.97
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 633 INMVSKDAILTPSNIVQDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
+ S I P+NI K + +D IVIG G G LT + LLLEA
Sbjct: 17 QGVPSLGVISPPTNIEDTDK--DGPWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEA 70
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 649 QDTKIFEKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGRE 692
+D I +++G G G+ + L L +E E
Sbjct: 31 RDQLINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE 74
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA 689
+K I+IG+G G A +L V LLEA
Sbjct: 276 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 309
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.8 bits (71), Expect = 1.3
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 18/198 (9%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEA-----GPEEIILDEIPLFVSHIVSSD 100
EEYD IV+G+G +++ ++ + VL ++ G I L+ +
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63
Query: 101 FNWGYTTEKTDGICKGMKNQRCNWPRGKVMGGTSVTNYMVYTRG----VPHDYDGWAAP- 155
+ + K N K++ T VT Y+ + V + P
Sbjct: 64 PPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPS 123
Query: 156 ---KIPTGKVMGGTSVTNYMVYTRGVP----HDYDGWAALGNIGWSFEEVLPYFKKSEDM 208
+ +MG + + V +D + + S +V F +D+
Sbjct: 124 TETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDV 183
Query: 209 KTAELKSSPYHGVGGYLK 226
+ + YL
Sbjct: 184 IDFTGHALALYRTDDYLD 201
Score = 31.8 bits (71), Expect = 1.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 655 EKEYDFIVIGAGSGGSVIANRL 676
++EYD IV+G G +++ +
Sbjct: 4 DEEYDVIVLGTGLTECILSGIM 25
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 31.8 bits (73), Expect = 1.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
D +VIGAG GG ++L T + +
Sbjct: 6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKA 41
Score = 31.4 bits (72), Expect = 2.1
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
D +V+G+G GG ++L T + +
Sbjct: 6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.8 bits (72), Expect = 1.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
+ + +V+G G G A L + + V +LEA GR
Sbjct: 9 KGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGGR 49
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 31.4 bits (72), Expect = 1.9
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
D +IG G+ G
Sbjct: 6 VINVDVAIIGTGTAGMGAYRA 26
Score = 29.5 bits (67), Expect = 8.5
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
D ++G+G+ G
Sbjct: 6 VINVDVAIIGTGTAGMGAYRA 26
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 30.8 bits (69), Expect = 2.0
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 3/119 (2%)
Query: 279 RAFLRPIRKRPNLKVAKRARVTKVLIDEND--NLKRA-TGVEFFKNKQRHTVRARKEVIL 335
+ R ++ R ++ RVT + + L++A T E + ++
Sbjct: 34 TLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASIVK 93
Query: 336 SAGALNSPQLLMLSGIGPRDHLEEMNIPVIQDLKVGYNLQDHVSMAGLVFLVNDSVTIV 394
+ N +++ +S G D +Q ++ N + TI+
Sbjct: 94 ALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTIL 152
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 31.3 bits (72), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
YD +V+GAG GG V A R
Sbjct: 2 THYDVVVLGAGPGGYVAAIR 21
Score = 29.8 bits (68), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 46 EEYDFIVVGSGSGGSVVANR 65
YD +V+G+G GG V A R
Sbjct: 2 THYDVVVLGAGPGGYVAAIR 21
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.9 bits (71), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
E D ++IG G GG V A +
Sbjct: 4 SDENDVVIIGGGPGGYVAAIK 24
Score = 30.6 bits (70), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANR 65
S ++E D +++G G GG V A +
Sbjct: 2 SGSDENDVVIIGGGPGGYVAAIK 24
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.0 bits (71), Expect = 2.6
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 34 PSDAVPDLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
PD + YD +VVG+G G +R TV EA
Sbjct: 8 SVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
Score = 29.5 bits (67), Expect = 7.1
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
YD +V+GAG G +R TV EA
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAA 53
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 30.9 bits (71), Expect = 2.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
K +D ++IG G G V A +
Sbjct: 4 KSHDVVIIGGGPAGYVAAIK 23
Score = 29.8 bits (68), Expect = 6.0
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANR 65
+ + +D +++G G G V A +
Sbjct: 1 TINKSHDVVIIGGGPAGYVAAIK 23
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 30.9 bits (70), Expect = 3.0
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 661 IVIGAGSGGSVIANRLTE-NPNWTVLLLEA 689
+V+G G+GG+ A + +P+ V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 30.6 bits (70), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 654 FEKEYDFIVIGAGSGGSVIANR 675
+ EYD +V+G G GG A
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFA 24
Score = 30.2 bits (69), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANR 65
S EYD +V+G G GG A
Sbjct: 2 SADAEYDVVVLGGGPGGYSAAFA 24
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 30.6 bits (70), Expect = 3.5
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
++ + +VIG G G IA+ L + V ++E
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRF 38
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.4 bits (68), Expect = 3.5
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 662 VIGAGSGGSVIANRLTEN 679
V+G G+GG A L
Sbjct: 9 VLGLGNGGHAFAAYLALK 26
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 30.6 bits (70), Expect = 3.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
+ ++IG G GG V A R
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIR 23
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 30.6 bits (70), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
YD IVIG+G GG V A +
Sbjct: 23 MMAYDLIVIGSGPGGYVCAIK 43
Score = 29.0 bits (66), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANR 65
YD IV+GSG GG V A +
Sbjct: 21 QSMMAYDLIVIGSGPGGYVCAIK 43
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 30.6 bits (68), Expect = 3.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 650 DTKIFEKEYDFIVIGAGSGGSVIANRL 676
D + + +YD IV+G G +++ L
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLL 30
Score = 30.2 bits (67), Expect = 4.1
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 DLKSFAEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGP 81
D ++ +YD IV+G+G +++ L+ + VL ++
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQD 44
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 30.6 bits (70), Expect = 3.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 655 EKEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
D +VIGAG G A + + VL +EAG
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAG 41
Score = 29.1 bits (66), Expect = 10.0
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 45 AEEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
+ D +V+G+G G A + + VL +EAG +
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGED 43
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 30.6 bits (70), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
+++D IVIGAG GG V A +
Sbjct: 2 QKFDVIVIGAGPGGYVAAIK 21
Score = 29.4 bits (67), Expect = 8.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
++++D IV+G+G GG V A +
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIK 21
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 30.2 bits (69), Expect = 4.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 655 EKEYDFIVIGAGSGGSVIANR 675
K YD IVIG G GG A R
Sbjct: 4 MKTYDLIVIGTGPGGYHAAIR 24
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 30.2 bits (68), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
IV+GAG G A RL+E +L+LEA GR
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 43
Score = 29.5 bits (66), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 48 YDFIVVGSGSGGSVVANRLTENSNWTVLLLEA 79
IVVG+G G A RL+E +L+LEA
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 4.5
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 14/37 (37%)
Query: 1078 KLRSSNPFDSPKFY-PNYLSDSRDLDVLIEAIKMAVE 1113
KL++S K Y DS L AIK +E
Sbjct: 24 KLQAS-----LKLYAD----DSAP--AL--AIKATME 47
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 30.2 bits (69), Expect = 4.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 654 FEKEYDFIVIGAGSGGSVIANR 675
+ D VIG+G GG V A +
Sbjct: 3 QPIDADVTVIGSGPGGYVAAIK 24
Score = 29.4 bits (67), Expect = 7.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 43 SFAEEYDFIVVGSGSGGSVVANR 65
+ D V+GSG GG V A +
Sbjct: 2 DQPIDADVTVIGSGPGGYVAAIK 24
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 30.2 bits (69), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAG 690
+E D +V+GAG G RL E +V ++E
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETA 48
Score = 29.5 bits (67), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 46 EEYDFIVVGSGSGGSVVANRLTENSNWTVLLLEAGPE 82
EE D +VVG+G G RL E +V ++E +
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD 50
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.8 bits (68), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
+YD +VIGAG G A R
Sbjct: 3 LKYDVVVIGAGGAGYHGAFR 22
Score = 29.8 bits (68), Expect = 6.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
+ +YD +V+G+G G A R
Sbjct: 2 SLKYDVVVIGAGGAGYHGAFR 22
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.8 bits (66), Expect = 5.8
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 661 IVIGAGSGGSVIANRLTENPNWTVLL 686
+++G+G + + L N + V +
Sbjct: 27 LLLGSGFVAQPVIDTLAANDDINVTV 52
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 29.8 bits (67), Expect = 5.9
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 45 AEEYDFIVVGSGSGGSVVANRL-----TENSNWTVLLLEAGPEEIILDEIPLFVSHIVS 98
AEE D ++VG+G G A RL + V L+E +H +S
Sbjct: 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH---------IGAHTLS 82
Score = 29.8 bits (67), Expect = 7.4
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 657 EYDFIVIGAGSGGSVIANRL-----TENPNWTVLLLEAGRE 692
E D +++GAG G A RL + V L+E
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.8 bits (68), Expect = 6.0
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 657 EYDFIVIGAGSGGSVIANR 675
+++G G G A
Sbjct: 2 VTRIVILGGGPAGYEAALV 20
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.8 bits (67), Expect = 6.7
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEA-----GR 691
+++GAG G A L V +LEA GR
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGR 71
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 29.5 bits (66), Expect = 7.0
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 21/127 (16%)
Query: 652 KIFEKEYDFIV--IGAGSGGSVIANRLTE--NPNWTVLL-LEAGREESLLTDVPLFVSYM 706
K FE + + + + G S++ E N V+L L+ ++ LF
Sbjct: 45 KAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAAS-KTGLFAKSG 103
Query: 707 VDTDFNWGYKTEKDERFCRGMSDQTCNWPRGKAMGGTSVINYMVYSRGVPQDFDNWEALG 766
V D ++ F ++ + + + L
Sbjct: 104 VAADAVNVPGGWNNDTF---------VP------FDYGYFAFVYDKNKLKNPPQSLKELV 148
Query: 767 NPGWSYR 773
++R
Sbjct: 149 ESDQNWR 155
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 7.2
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 23/71 (32%)
Query: 316 VEFFK------NKQRH---TVRARKEVILSAGAL-----NSPQLLMLSGIGPRDHLEEMN 361
V F + + H +R K V+ + L + ++ S L+ +
Sbjct: 806 VHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVES-------LKRVI 858
Query: 362 IP--VIQDLKV 370
+P D V
Sbjct: 859 LPSLGDTDELV 869
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 29.4 bits (67), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 657 EYDFIVIGAGSGGSVIANR 675
YD +VIG G GG V + +
Sbjct: 2 PYDVVVIGGGPGGYVASIK 20
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 29.4 bits (67), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 45 AEEYDFIVVGSGSGGSVVANR 65
A E + +VVG+G GG V A R
Sbjct: 1 AIETETLVVGAGPGGYVAAIR 21
Score = 29.4 bits (67), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 656 KEYDFIVIGAGSGGSVIANR 675
E + +V+GAG GG V A R
Sbjct: 2 IETETLVVGAGPGGYVAAIR 21
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.4 bits (66), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 656 KEYDFIVIGAGSGGSVIANRLTENPNWTVLLLEAGR 691
+ + +IGAG+ G +A L + V++LE G
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT 38
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 29.4 bits (67), Expect = 8.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 658 YDFIVIGAGSGGSVIANR 675
YD +VIGAG GG V A R
Sbjct: 2 YDLLVIGAGPGGYVAAIR 19
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,738,035
Number of extensions: 1195055
Number of successful extensions: 3081
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2852
Number of HSP's successfully gapped: 238
Length of query: 1183
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1079
Effective length of database: 3,798,009
Effective search space: 4098051711
Effective search space used: 4098051711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.7 bits)