BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8893
(820 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|F Chain F, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 153
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 126/148 (85%), Gaps = 1/148 (0%)
Query: 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGL 616
E SLYT+K I ILDNDG RL AKYYD + +VK+QKAFEKN+FNKTHR ++EI +LEGL
Sbjct: 7 EPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGL 65
Query: 617 TCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLAL 676
T VYKS++DL+FYV+GSS+ENEL+LM+VLNCL+D++SQ+LRKNVEKR +L+N++ + LA+
Sbjct: 66 TVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAV 125
Query: 677 DEICDGGIIQEADSSAVVQRVALRVDDI 704
DEI DGG+I E+D VV RVALR +D+
Sbjct: 126 DEIVDGGVILESDPQQVVHRVALRGEDV 153
>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop
Length = 149
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/144 (66%), Positives = 123/144 (85%), Gaps = 1/144 (0%)
Query: 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGL 616
E SLYT+K I ILDNDG RL AKYYD + +VK+QKAFEKN+FNKTHR ++EI +LEGL
Sbjct: 7 EPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGL 65
Query: 617 TCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLAL 676
T VYKS++DL+FYV+GSS+ENEL+LM+VLNCL+D++SQ+LRKNVEKR +L+N++ + LA+
Sbjct: 66 TVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAV 125
Query: 677 DEICDGGIIQEADSSAVVQRVALR 700
DEI DGG+I E+D VV RVALR
Sbjct: 126 DEIVDGGVILESDPQQVVHRVALR 149
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 232 SQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDK 291
SQL+++DR D ++PL +LT++ + ++ I N K+ ++ E
Sbjct: 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPE----------- 273
Query: 292 KSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
K ++L+ D+L+ +R + V ++K+ K + + +K + +K L Q L
Sbjct: 274 KEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADK--AGIKDLSQMLKK 331
Query: 352 MINTKKLLANHTNIAELIKD-VTDTAEFLDAL-HAEQEIFLGVDTD 395
M +K L+ ++ L +D + + +D L EQ++ +G D D
Sbjct: 332 MPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDAD 377
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 232 SQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDK 291
SQL+++DR D +P+ +LT++ + ++ I N K+ + ++
Sbjct: 240 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEAR-----------V 288
Query: 292 KSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
K ++L+ D+L+ ALR K V +++ K S+ + ++ ++ +++++P
Sbjct: 289 KEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQ 348
Query: 352 MINTKKLLANHTNIAE-LIKDVTDTAEFLDALHAEQEIFLGVDTD 395
+ H ++AE +K T + L EQ++ +G D +
Sbjct: 349 YQKELSKYSTHLHLAEDCMKHYQGTVDKL--CRVEQDLAMGTDAE 391
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 232 SQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDK 291
SQL+++DR D +P+ +LT++ + ++ I N K+ + ++
Sbjct: 228 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEAR-----------V 276
Query: 292 KSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
K ++L+ D+L+ ALR K V +++ K S+ N EK+ M+ L Q L
Sbjct: 277 KEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSS-KRMNTGEKTT--MRDLSQMLKK 333
Query: 352 MINTKKLLANHTNIAELIKDVTDTAE-FLDAL-HAEQEIFLGVDTD 395
M +K L+ ++ L +D + +D L EQ++ +G D +
Sbjct: 334 MPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAE 379
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 232 SQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDK 291
SQL++IDR D ++ + +LT++ + ++ I N T K+ K +
Sbjct: 233 SQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKY---------------KTDGKE 277
Query: 292 KSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
K +L D+L+ +R + V + K K IS+ + S+S + L++++PH
Sbjct: 278 KEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISST-KKATEGKTSLSALTQLMKKMPH 336
Query: 352 MINTKKLLANHTNIAELIKDVTDTAEF-LDAL-HAEQEIFLGVDTD 395
H N+AE D + + ++ L EQ++ LG D +
Sbjct: 337 FRKQISKQVVHLNLAE---DCMNKFKLNIEKLCKTEQDLALGTDAE 379
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 232 SQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDK 291
SQL+++DR D ++PL +LT++ ++ I N K+ ++ E
Sbjct: 225 SQLLILDRGFDPISPLLHELTFQAXAYDLLPIENDVYKYVNTGGNEVPE----------- 273
Query: 292 KSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
K ++L+ D+L+ R + V ++K+ K + + +K + +K L Q L
Sbjct: 274 KEVLLDEKDDLWVEXRHQHIAVVSQNVTKKLKQFADEKRXGTAADK--AGIKDLSQXLKK 331
Query: 352 MINTKKLLANHTNIAELIKDVTDT-AEFLDAL-HAEQEIFLGVDTD 395
+K L+ ++ L +D + +D L EQ++ G D D
Sbjct: 332 XPQYQKELSKYSTHLHLAEDCXKQYQQHVDKLCKVEQDLAXGTDAD 377
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 184 IITLQNLYGIIPRVSGKGPCVQQV-WDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVD 242
+ T N+ I+ S P +++ L K + + +N + SQ +++DR VD
Sbjct: 172 LCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVD 231
Query: 243 VLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDEL 302
+ +PL +LTY+ ++ I N + E+ ++ ++L D++
Sbjct: 232 LKSPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQ----------QRQVVLGEDDDI 281
Query: 303 FAALR----DKIFTGVGPYLSK---RAKFISAQFDTQNYHEKSVSEMKTLVQQLPH 351
+ +R ++F V + A+ + D+Q E +K +++ LP
Sbjct: 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQ 336
>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
Functional Aminotransferase Involved In Butirosin
Biosynthesis.
pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
Btrr, A Dual Functional Aminotransferase Involved In
Butirosin Biosynthesis
Length = 418
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 1 MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVG 47
+ HL G N+ + + A+ L ++E C+ +W++ AG +G
Sbjct: 135 IPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIG 181
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 343 KTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIE 402
K L Q++ T + N +++EL+KD D A+H +E+ LP E
Sbjct: 32 KALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-------QLPLFE 84
Query: 403 NAIAHKKPLMKVLKLICMQSFTSSG 427
+A + ++ L LI SF + G
Sbjct: 85 SA---SRGCLRSLSLIIKTSFCAPG 106
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 73 PMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFF---VPRKSLLCEQR 129
P+ ++ + F++ P +++DII +++K SD + ++++ F +PR L E
Sbjct: 97 PLPDVPAIYFVS-PTKENIDIIVNDLK-------SD-KYSEFYINFTSSLPRN--LLEDL 145
Query: 130 LQENGVLGNFNIIEAFTCNLFPF---DNDLVSMEMELAYREYHLEKDPTCLYE------- 179
Q+ + G + I+ F + +L S+E+ AY + DP E
Sbjct: 146 AQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLN---DPKTTEEEITGLCA 202
Query: 180 -VAQAIITLQNLYGIIP--RVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQ--- 233
+A + IP R + GP L +L N N + T Q +
Sbjct: 203 NIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLE 262
Query: 234 ---LILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFP 271
LI++DRN+D + + Y+ + +IF + T P
Sbjct: 263 RGVLIILDRNIDFASXFSHSWIYQCXVFDIFKLSRNTVTIP 303
>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core
pdb|1W63|S Chain S, Ap1 Clathrin Adaptor Core
pdb|1W63|T Chain T, Ap1 Clathrin Adaptor Core
pdb|1W63|U Chain U, Ap1 Clathrin Adaptor Core
pdb|1W63|W Chain W, Ap1 Clathrin Adaptor Core
pdb|1W63|X Chain X, Ap1 Clathrin Adaptor Core
Length = 158
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 616 LTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLA 675
L VYK L+F +NELI + +++ + + + +V + +++ N +
Sbjct: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFI 113
Query: 676 LDEICDGGIIQEADSSAVVQRV 697
LDE GG +Q+ +V++ +
Sbjct: 114 LDEFLMGGDVQDTSKKSVLKAI 135
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 442 QTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIY 501
+ Y FQ++ LS + + G + ++ +G Y++ +MMR + +S L F+ SI+
Sbjct: 234 EHYEFQYLDLLSRVLENGAYRENR-TGISTYSIFGQMMRFDMRESFPLLTTKKVFIRSIF 292
Query: 502 APL 504
L
Sbjct: 293 EEL 295
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 629 YVMGSSHENELILMSVLNCLYDAISQILR---KNVEKRNVLDNLDIVMLALDEICDGGII 685
Y++ +S +N + + V + LY + Q+ K +E+ ++ DN I+ LDE+ D G
Sbjct: 66 YLVATSKKNACVSL-VFSFLYKVV-QVFSEYFKELEEESIRDNFVIIYELLDELMDFGYP 123
Query: 686 QEADS 690
Q DS
Sbjct: 124 QTTDS 128
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 578 AKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFF 628
+ YYDPN LST D+ F K + R N+ I G +Y+ + D+ F
Sbjct: 89 SGYYDPNYLSTDSDKDTFLKEIIKLFKRINSREI---GEELIYRLSTDIPF 136
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 578 AKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFF 628
+ YYDPN LST D+ F K + R N+ I G +Y+ + D+ F
Sbjct: 69 SGYYDPNYLSTDSDKDTFLKEIIKLFKRINSREI---GEELIYRLSTDIPF 116
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 347 QQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393
+QLP + TK L+ +H N++ELIK + + L+A Q FL V+
Sbjct: 47 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ----LNANQAFFLLVN 89
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 347 QQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393
+QLP + TK L+ +H N++ELIK + + L+A Q FL V+
Sbjct: 47 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ----LNANQAFFLLVN 89
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 347 QQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393
+QLP + TK L+ +H N++ELIK + + L+A Q FL V+
Sbjct: 47 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ----LNANQAFFLLVN 89
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 347 QQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393
+QLP + TK L+ +H N++ELIK + + L+A Q FL V+
Sbjct: 43 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ----LNANQAFFLLVN 85
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 347 QQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393
+QLP + TK L+ +H N++ELIK + + L+A Q FL V+
Sbjct: 42 KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ----LNANQAFFLLVN 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,007,081
Number of Sequences: 62578
Number of extensions: 796461
Number of successful extensions: 1848
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 33
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)