Query psy8893
Match_columns 820
No_of_seqs 417 out of 1475
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:09:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1302|consensus 100.0 4.9E-96 1E-100 809.7 44.8 567 1-583 1-580 (600)
2 PF00995 Sec1: Sec1 family; I 100.0 8.8E-81 1.9E-85 735.1 32.5 520 33-582 1-542 (564)
3 KOG1300|consensus 100.0 2.7E-69 5.8E-74 595.1 42.4 532 15-585 3-564 (593)
4 COG5158 SEC1 Proteins involved 100.0 5.8E-68 1.3E-72 597.3 39.8 534 13-582 2-553 (582)
5 KOG1299|consensus 100.0 1.4E-65 3.1E-70 546.4 37.0 509 16-578 4-520 (549)
6 KOG1301|consensus 100.0 3E-63 6.5E-68 534.6 36.7 546 11-603 8-615 (621)
7 KOG3343|consensus 100.0 1.1E-43 2.5E-48 327.7 14.3 172 557-820 3-175 (175)
8 KOG0936|consensus 100.0 2.6E-38 5.5E-43 289.1 11.8 166 562-732 1-175 (182)
9 COG5030 APS2 Clathrin adaptor 100.0 1.5E-32 3.1E-37 248.8 11.1 136 562-701 1-139 (152)
10 KOG0935|consensus 100.0 2.3E-29 5E-34 221.5 10.2 136 562-701 1-140 (143)
11 KOG0934|consensus 100.0 7.3E-29 1.6E-33 224.8 7.5 136 562-701 1-139 (145)
12 PF01217 Clat_adaptor_s: Clath 99.9 4.5E-27 9.8E-32 227.2 14.2 136 562-701 1-139 (141)
13 COG5541 RET3 Vesicle coat comp 99.9 3.9E-26 8.5E-31 210.2 13.0 168 558-725 3-182 (187)
14 KOG3343|consensus 98.7 1.1E-08 2.3E-13 96.3 3.7 50 676-725 122-172 (175)
15 KOG0938|consensus 98.3 1.5E-06 3.3E-11 91.2 7.9 132 562-701 1-136 (446)
16 COG5541 RET3 Vesicle coat comp 98.0 1.7E-05 3.7E-10 74.5 7.1 85 706-820 89-185 (187)
17 KOG2740|consensus 97.5 0.00054 1.2E-08 73.3 10.8 134 562-701 1-139 (418)
18 KOG0937|consensus 97.1 0.0036 7.8E-08 69.4 11.4 134 564-700 2-136 (424)
19 PF01217 Clat_adaptor_s: Clath 96.9 0.00017 3.7E-09 69.7 -0.5 31 751-793 109-139 (141)
20 KOG2635|consensus 94.5 0.46 9.9E-06 52.8 12.6 131 562-699 2-136 (512)
21 PF15001 AP-5_subunit_s1: AP-5 90.7 1.8 4E-05 43.6 9.9 79 614-693 102-181 (189)
22 PF14071 YlbD_coat: Putative c 36.0 33 0.00071 32.3 2.8 14 294-307 32-45 (124)
23 PF03164 Mon1: Trafficking pro 30.4 2.1E+02 0.0045 32.9 8.8 103 567-672 15-130 (415)
24 PF08923 MAPKK1_Int: Mitogen-a 28.6 2.8E+02 0.0061 26.0 7.8 90 563-655 17-115 (119)
25 COG2019 AdkA Archaeal adenylat 25.7 47 0.001 33.1 2.1 30 763-792 99-130 (189)
26 COG1317 FliH Flagellar biosynt 23.8 1.4E+02 0.0031 31.4 5.5 114 640-785 96-209 (234)
27 PF12983 DUF3867: Protein of u 21.5 2.5E+02 0.0054 28.0 6.1 56 426-481 53-108 (186)
28 COG5030 APS2 Clathrin adaptor 21.1 48 0.001 31.6 1.2 26 754-791 112-137 (152)
29 KOG0936|consensus 20.4 52 0.0011 31.8 1.2 58 705-791 80-143 (182)
No 1
>KOG1302|consensus
Probab=100.00 E-value=4.9e-96 Score=809.72 Aligned_cols=567 Identities=40% Similarity=0.677 Sum_probs=516.6
Q ss_pred CCCCCCC--CCCChHHHHHHHHHHHHHHhhcCCCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCC
Q psy8893 1 MSTHLSG--GKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIA 78 (820)
Q Consensus 1 ~~~~~~~--~~~~l~~lre~~r~~L~~~L~~~~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~ 78 (820)
||||++. ...|+..+|+.++++|.++|+++||.|.||+|+.++++|+++.+++.|++|||..+..++.++.|. .++.
T Consensus 1 m~~~~~d~~~~~~l~~lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~-~~~~ 79 (600)
T KOG1302|consen 1 MAPHLSDLGADLNLQGLQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPN-SEVK 79 (600)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcc-cccC
Confidence 8999985 467789999999999999999999999999999999999999999999999999999999887555 5678
Q ss_pred eEEEEECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeE
Q psy8893 79 NVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVS 158 (820)
Q Consensus 79 ~aIY~i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfs 158 (820)
++|||+||+.++++.|++++++....+ ..+.|||+|+|++...|...|+++|+++. ..+++++|+++|+|.|++|
T Consensus 80 ~~vy~~Rp~~~~~~~ia~~v~~~~~d~----~~r~~~vi~~P~~~~~c~~~Lee~gv~~~-v~~~e~~~~~lpld~DllS 154 (600)
T KOG1302|consen 80 QVVYFVRPRLENMQLIAEHVENVQRDG----FTRDYHVIFVPRRSSLCETLLEEEGVYGL-VLVEEQILDLLPLDGDLLS 154 (600)
T ss_pred eEEEEEcCchHHHHHHHHHHhhhhhch----hcceeEEEEeccHHHHHHHHHHhcccccc-cccchhhhhhccccccchh
Confidence 899999999999999999999876443 68999999999999999999999999965 6799999999999999999
Q ss_pred ecCchhhhhhcCCCCccHHHHHHHHHHHHHHHhCCCCeEEecCchhHHHHHHHHHHhcCCCCCCCCccCCCCcceEEEEe
Q psy8893 159 MEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILID 238 (820)
Q Consensus 159 Le~p~~f~~l~~~~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~~a~~va~~l~~~~~e~~~~~~~~~~~~~~~~LIIlD 238 (820)
|++|++|.++|+++|.+.+..+|++|.++|..+|.||.|+++|++|+++++++.++.++....+. +..++++++|++|
T Consensus 155 lEl~~~~~d~~~~gd~s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~--~~~~~~~~liLlD 232 (600)
T KOG1302|consen 155 LELPNSFLDLYLDGDQSSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENN--GDRPEIDHLILLD 232 (600)
T ss_pred ccchHHHHHHhhccccchhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccC--CCccccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999887765532 3457889999999
Q ss_pred cCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCC-ccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHH
Q psy8893 239 RNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQS-EEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPY 317 (820)
Q Consensus 239 Rs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~-~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~ 317 (820)
|++|++||||||.||+||+||+|||++|.|+++++..... +|+ .. ...+.++.+.++..|++|+++|++||+.|++.
T Consensus 233 R~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~-~~-~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~ 310 (600)
T KOG1302|consen 233 RDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGD-LG-KGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPL 310 (600)
T ss_pred ccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCC-Cc-cCccccceeccCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765421 111 00 11133566777789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccc
Q psy8893 318 LSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKA 397 (820)
Q Consensus 318 L~~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~ 397 (820)
+++++++++.+++. +++.++++||++||++||+++++++.++.|+++|+.+++.+++.+|.+.+.+||+++.|.|.++.
T Consensus 311 lsk~ak~l~~~~~~-r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~ 389 (600)
T KOG1302|consen 311 LSKKAKELQAQYET-RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKD 389 (600)
T ss_pred HHHHHHHHHHHHHh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccc
Confidence 99999999999998 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCCCC-------C
Q psy8893 398 LPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGT-------R 470 (820)
Q Consensus 398 ~~~Ie~lI~~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~~~-------~ 470 (820)
.++|+|+|....+...+|||+||.|++.+|+++|+|+.||+.++|.||++++.+|.||+++||++++...++ +
T Consensus 390 ~~~IeElI~~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~ 469 (600)
T KOG1302|consen 390 FDYIEELIYQEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEHLLTLQNLEKAGLLREQTGGRKLHTKSSKR 469 (600)
T ss_pred hHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccccCCCcchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999873321 3
Q ss_pred cchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcC-CCCChhhhhhccCCCcccccccccccccc--ccc
Q psy8893 471 QYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTRE-PSIIPQDLLALLPGAVLEETQTTTSSRRN--RNT 547 (820)
Q Consensus 471 ~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~-~~~~~~~~l~~l~g~~~~~~~~~~~~~~~--~~~ 547 (820)
.|++++|.+++++++.++++|+|++|+||||+||++||+|.++++ +|..+.+.+..+||+.+++.++.++.... +++
T Consensus 470 ~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~ 549 (600)
T KOG1302|consen 470 NYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSP 549 (600)
T ss_pred HHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCC
Confidence 799999999999999999999999999999999999999999998 99999999999999999888887654322 223
Q ss_pred ccccccccccceEEEEEEEEEeccchhhHHHHhhCC
Q psy8893 548 QENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDP 583 (820)
Q Consensus 548 ~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~ 583 (820)
+.++.++ ||++||+|++|+++.|.+++..+.
T Consensus 550 g~~R~~l-----Vff~GG~T~~EIAalr~l~~~~~~ 580 (600)
T KOG1302|consen 550 GALRVTL-----VFFLGGCTYAEIAALRFLAKLEGY 580 (600)
T ss_pred CCcceEE-----EEEECCccHHHHHHHHHHHhhcCc
Confidence 3357777 999999999999999999998774
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=8.8e-81 Score=735.08 Aligned_cols=520 Identities=31% Similarity=0.489 Sum_probs=403.3
Q ss_pred ceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChhhHHHHHHHHhhhhhcccccCCCc
Q psy8893 33 KKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRI 112 (820)
Q Consensus 33 ~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~ 112 (820)
||+||+|+.+.++|+++|++++|+++||+.++.|++.|.|. ++ .++||||+|+.+++++|+++++++ +|+
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~-~~-~~~iy~i~p~~~~i~~i~~~~~~~--------~~~ 70 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPM-PS-MDAIYFIRPTPENIKRIIKDLKNP--------PYR 70 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-B-TT-SEEEEEE-S-HHHHHHHHHHCHST--------SBS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcC-CC-cceEEEEcCcHHHHHHHHHHHHhc--------ccc
Confidence 99999999999999999999999999999999999988775 54 479999999999999999999985 699
Q ss_pred cEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhcC-CCCccHHHHHHHHHHHHHHHh
Q psy8893 113 DYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHL-EKDPTCLYEVAQAIITLQNLY 191 (820)
Q Consensus 113 ~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~~-~~d~s~l~~iA~~L~sL~~~~ 191 (820)
+|||+|+|+.+..+++.|+++++.+.+.++.|+++||+|+|+|+|||++|++|.++|. .++.+.++.+|++|+++|.++
T Consensus 71 ~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~~~~l~~~a~~L~~l~~~~ 150 (564)
T PF00995_consen 71 SYHIFFTPRVSESLLEILAESGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGDESSLQRIADSLLSLQLTL 150 (564)
T ss_dssp EEEEEESS---HHHHHHHHHSCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEehhhhhHHHHhhhhcCccceecccccceeEEEEccchhhhhcccchHHHHhccccchhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988899999999999999999999999999999 889999999999999999999
Q ss_pred CCCCeEEecCc-hhHHHHHHHHHHhcCCCC----CCCCc--cCCCCcceEEEEecCCCccccccccchhhHHhhhhhccc
Q psy8893 192 GIIPRVSGKGP-CVQQVWDLTKRLSLEPKN----KNVNQ--CKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIH 264 (820)
Q Consensus 192 G~~P~I~~~G~-~a~~va~~l~~~~~e~~~----~~~~~--~~~~~~~~LIIlDRs~DliTPLlh~~TYqaLlddl~~I~ 264 (820)
|.+|.|||.|+ .|++|++++.++.++... ..... ....++++|||+||++|++||||||||||||+||+|||+
T Consensus 151 g~~p~I~~~g~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~ 230 (564)
T PF00995_consen 151 GEIPNIRYKGNSNAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGIN 230 (564)
T ss_dssp T---EEEE-TTCHHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEB
T ss_pred CCCCeEEEeCchhHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhc
Confidence 99999999999 999999988865443110 00000 123345889999999999999999999999999999999
Q ss_pred CCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHHHHHHHHHHHH-hhhccccCCHHHHH
Q psy8893 265 NTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQF-DTQNYHEKSVSEMK 343 (820)
Q Consensus 265 ~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~~~~~~~~~~~-~~~~~~~~si~em~ 343 (820)
+|.|+++.+... + ..++++.||++|++|+++||+||++|++.|+++++++++++ .. +.+..++++|+
T Consensus 231 ~~~v~~~~~~~~---~--------~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 298 (564)
T PF00995_consen 231 NNKVEIPDEINS---G--------ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEYEKS-RSKSKSIQEMK 298 (564)
T ss_dssp TTEEEEEECSSS---S--------ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHCH-----STTTHHCHH
T ss_pred CCEeccccCCCc---c--------ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhhccc-cchhhHHHHHH
Confidence 999999764321 1 01479999999999999999999999999999999999876 23 56788999999
Q ss_pred HHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccc-hHHHHHHH-hCCCChHHHHHHHHHH
Q psy8893 344 TLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKA-LPYIENAI-AHKKPLMKVLKLICMQ 421 (820)
Q Consensus 344 ~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~-~~~Ie~lI-~~~~~~~d~LRLl~Ly 421 (820)
+||++||+++++++.++.|++||++|++.++++.|.+++++||++++|.+.++. .+.|+++| ....+..++|||+|||
T Consensus 299 ~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d~LRLl~L~ 378 (564)
T PF00995_consen 299 EFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIEDKLRLLCLY 378 (564)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877764 67799999 7899999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHH-hCccHHHHHHHHHhcCCccccCCCCCCcchHhHHhhccc---ccccCCCCCCCcccc
Q psy8893 422 SFTSSGLKPKVLEYYKREIIQT-YGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLT---VEDSSELAPADINFV 497 (820)
Q Consensus 422 sl~~~Gl~~k~~~~~k~~l~~~-~G~~~~~~l~nL~~lGll~~~~~~~~~~~~~i~k~l~l~---~~~~~~~~~~d~~y~ 497 (820)
++++ |+++++++.+++.+.+. ||.+++..|.+|+++|+...+. +++.|+.+++.++++ .+......+++++|+
T Consensus 379 sl~~-g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 455 (564)
T PF00995_consen 379 SLTN-GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKD--NSSNFQSIRKKLNLISKFNDKNDKNNPKDISYV 455 (564)
T ss_dssp HHHH--HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSH--TTS--CTTC-TT---HHTTCCCSSSSCSCCCST
T ss_pred HHHh-cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhcc--Cccchhhhcccccccccccccccccccccccch
Confidence 9998 99999999999999999 9999999999999999998874 111577778888876 334445578899999
Q ss_pred ccccchhHHHHHHHHhcCCC------CChhhhhhccCCCccccccccccccc-ccccccccccccccceEEEEEEEEEec
Q psy8893 498 HSIYAPLSIRLVQRLTREPS------IIPQDLLALLPGAVLEETQTTTSSRR-NRNTQENKMLTFQEASLYTIKGIAILD 570 (820)
Q Consensus 498 ~sgY~Pl~~rlve~l~~~~~------~~~~~~l~~l~g~~~~~~~~~~~~~~-~~~~~~~k~i~~~~~~v~~Iggi~~~e 570 (820)
|+||+|+++|+||.+.++.| ..++.....++|+.++..+..+.... .....+.+.++ ||+|||+||.|
T Consensus 456 ~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi-----Vf~vGGvTy~E 530 (564)
T PF00995_consen 456 YSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGSSFSLRSSKPSRSKTQPSNKPRKRVI-----VFFVGGVTYSE 530 (564)
T ss_dssp TCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----SSSSSS-------------S-SSEEE-----EEEETEBEHHH
T ss_pred hcccccHHHHHHHHHhhccCCcccccccccccccccCCCCcccccccccccccccccCCCCEEE-----EEEEcCCcHHH
Confidence 99999999999999987543 33322221122222221111110000 00111223455 99999999999
Q ss_pred cchhhHHHHhhC
Q psy8893 571 NDGHRLLAKYYD 582 (820)
Q Consensus 571 ~~g~r~l~k~y~ 582 (820)
.++.+.+++.++
T Consensus 531 i~~l~~l~~~~~ 542 (564)
T PF00995_consen 531 IRALRELSKKLG 542 (564)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHhhC
Confidence 999999999987
No 3
>KOG1300|consensus
Probab=100.00 E-value=2.7e-69 Score=595.14 Aligned_cols=532 Identities=16% Similarity=0.250 Sum_probs=418.7
Q ss_pred HHHHHHHH-HHHHhhcC--CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChhhH
Q psy8893 15 VQDFARTQ-FLELLEKC--SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHM 91 (820)
Q Consensus 15 lre~~r~~-L~~~L~~~--~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~~i 91 (820)
+++..++. +.++++-- ..|||||+|+.+++++|+||+|++++++||+.++.+++.|.|. +. ..||||++|+.+++
T Consensus 3 l~~l~~~kil~~v~~~~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~-~S-meaIY~i~pt~~~V 80 (593)
T KOG1300|consen 3 LKELVKKKILEDVLRVEKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPL-PS-MEAIYFITPTEESV 80 (593)
T ss_pred hHHHHHHHHHHHhcccCCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCC-Cc-ceeEEEecCchhhH
Confidence 56666666 45566522 2599999999999999999999999999999999999999885 54 57999999999999
Q ss_pred HHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhcCC
Q psy8893 92 DIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLE 171 (820)
Q Consensus 92 ~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~~~ 171 (820)
++++.||.... +.|+.+||||++.++..+.+.|..+.....|.++++.+++|+|+|+++|+++.|++|..+|.+
T Consensus 81 ~~~i~Df~~~~------~~Y~~ahifF~~~c~~~lf~~l~ks~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~ 154 (593)
T KOG1300|consen 81 DCLIKDFEGRS------PLYKAAHIFFLDPCPDPLFNKLSKSRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSP 154 (593)
T ss_pred HHHHHhhcccC------cccceEEEEEcCCCCHHHHHHHHhhhHhhhhhhheecccccceecceeeeecChhhHHHhcCc
Confidence 99999998332 269999999999999999999998888888999999999999999999999999999999998
Q ss_pred CC----ccHHHHHHHHHHHHHHHhCCCCeEEecCc-------hhHHHHHHHHH-HhcCCCCCCCCccCCCCcceEEEEec
Q psy8893 172 KD----PTCLYEVAQAIITLQNLYGIIPRVSGKGP-------CVQQVWDLTKR-LSLEPKNKNVNQCKTSQISQLILIDR 239 (820)
Q Consensus 172 ~d----~s~l~~iA~~L~sL~~~~G~~P~I~~~G~-------~a~~va~~l~~-~~~e~~~~~~~~~~~~~~~~LIIlDR 239 (820)
.. ...+..+|.+++++|.++|++|+|||.|. .|..|++.+.. +.....+. .+ .+...++.|||+||
T Consensus 155 ~~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~~~-~~-~p~~~~seLlIlDR 232 (593)
T KOG1300|consen 155 DNAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKPSI-GN-GPQKTRSELLILDR 232 (593)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhccccc-CC-CCCcccceEEEEec
Confidence 72 45789999999999999999999999884 23444444442 22222222 11 34567899999999
Q ss_pred CCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHH
Q psy8893 240 NVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLS 319 (820)
Q Consensus 240 s~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~ 319 (820)
++|++||++|+||||||+||+++|++|.+.+.... ..| .+++++.|+++|++|.++||+||++|.+.|+
T Consensus 233 s~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g---~~g--------~~kk~vllde~D~~WveLRH~HIadvse~l~ 301 (593)
T KOG1300|consen 233 SFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPG---KSG--------EKKKEVLLDEDDDLWVELRHKHIADVSERLT 301 (593)
T ss_pred cccccchHHHHHHHHHHHHHHHhhcCCEEEEecCC---CCC--------CccceeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999886531 111 1278899999999999999999999999999
Q ss_pred HHHHHHHHHHhh-h-ccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCccc-
Q psy8893 320 KRAKFISAQFDT-Q-NYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDK- 396 (820)
Q Consensus 320 ~~~~~~~~~~~~-~-~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~- 396 (820)
+.+++|.+..+. + +.+..|++|+.++|++||+|+++..+++.|+.||++|++.++. .+.+++.+||++++|.|..+
T Consensus 302 ~~~k~f~~~nk~~~~~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 302 KKMKNFSSKNKRLQTKSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHHHHHHhhhhhhhccccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 999999986632 1 3345789999999999999999999999999999999999998 99999999999999977643
Q ss_pred -chHHHHHHH----hCCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc--cHHHHHHHHHhcCCccccCCCCC
Q psy8893 397 -ALPYIENAI----AHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--QHILTLSNLEQAGLLKNSQNSGT 469 (820)
Q Consensus 397 -~~~~Ie~lI----~~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--~~~~~l~nL~~lGll~~~~~~~~ 469 (820)
+.+.+.+++ ....+..+++|++.+|.+..+|+++.++. +|+++.|+ +++..+.|+...|.-...+. ..
T Consensus 381 kik~~~~~~~p~l~~~~~~~~dklR~Illy~~~~~Gi~ee~l~----kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~-~~ 455 (593)
T KOG1300|consen 381 KIKDSLRDLLPILLESNVRLLDKLRLILLYIFERKGIIEENLA----KLLQHAGISVEEMQIIQNLHILGVPVTKDS-FL 455 (593)
T ss_pred cHHHHHHhhhhhhcccCchHHHHHHHHHHHHHhcCCccHHHHH----HHhcccCCCchHHHHHhhHHHhCCccccCc-cc
Confidence 555555442 34688999999999999999999999887 88898887 68889999999997665431 11
Q ss_pred CcchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCc-cccccccccccccc---
Q psy8893 470 RQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAV-LEETQTTTSSRRNR--- 545 (820)
Q Consensus 470 ~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~-~~~~~~~~~~~~~~--- 545 (820)
..+..-. .++. +.+..|..|||+|.+..++|+++++..+. ..++.+.++. +.......+.+.+.
T Consensus 456 ~k~~~~~------rker----~~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~--~~fp~~~~~s~~~~~~~~~Sar~~~~~~ 523 (593)
T KOG1300|consen 456 LKFDPPE------RKER----VEEQTYQLSRWVPVIKNILEKLIEDRLDK--KHFPYLNDTSETSSGSAATSARYGHPLS 523 (593)
T ss_pred ccCCCCc------cccc----cccceeeeeeeehHHHHHHHHHHhccCCh--hhCccccCCccccccCccccccccCccc
Confidence 1111100 1111 24568999999999999999999874332 2344554443 11111111111110
Q ss_pred -ccccccccccccceEEEEEEEEEeccchhhHHHHhhCCCC
Q psy8893 546 -NTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNI 585 (820)
Q Consensus 546 -~~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~~~ 585 (820)
.++...+...|.++||+|||+|+.|.++.+.++..++..+
T Consensus 524 ~k~~~~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EV 564 (593)
T KOG1300|consen 524 NKTPSAFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREV 564 (593)
T ss_pred ccCcchhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceE
Confidence 0110011112333499999999999999999999988643
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.8e-68 Score=597.34 Aligned_cols=534 Identities=20% Similarity=0.259 Sum_probs=423.1
Q ss_pred HHHHHHHHHHHHHHhhcCCC---ceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893 13 SLVQDFARTQFLELLEKCSG---KKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK 89 (820)
Q Consensus 13 ~~lre~~r~~L~~~L~~~~g---~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~ 89 (820)
..+++.+++++.+++..+.+ ||||++|+.+..+||+++.+++|++|||+.++.|+++|.|. .+ ..|||||+||.+
T Consensus 2 ~dl~e~q~~~i~~~i~~v~~~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~-~~-~~aiy~v~pt~e 79 (582)
T COG5158 2 MDLLELQKNKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPI-SD-LPAIYFVRPTKE 79 (582)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCC-CC-CCEEEEEcCchH
Confidence 35899999999999888764 99999999999999999999999999999999999998775 45 479999999999
Q ss_pred hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893 90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH 169 (820)
Q Consensus 90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~ 169 (820)
+++.|++|+++.. + .|..||+.|+|.++....+.+++.|.+..+..+.++++||+++|+|+|++++|..|...+
T Consensus 80 ~i~~i~~D~~~~~-~-----~Y~~~~~~f~~~~~~~l~e~l~es~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~ 153 (582)
T COG5158 80 NIDLILEDLEQWD-P-----FYLNYHISFLNTVTESLLELLAESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESS 153 (582)
T ss_pred HHHHHHHHHhccC-c-----cccceeEEecccchHHHHHHHhhcCchhheeeeeeeecceEEechHhHhhcCchhhhhhc
Confidence 9999999999852 1 599999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHhCCCCeEEecC-chhHHHHHHHHHHhc-CCCCCC-CCccCCCCcceEEEEecCCCcccc
Q psy8893 170 LEKDPTCLYEVAQAIITLQNLYGIIPRVSGKG-PCVQQVWDLTKRLSL-EPKNKN-VNQCKTSQISQLILIDRNVDVLTP 246 (820)
Q Consensus 170 ~~~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G-~~a~~va~~l~~~~~-e~~~~~-~~~~~~~~~~~LIIlDRs~DliTP 246 (820)
.++....+..++.+|+++|.++|.+|.|||.| +.|..+|+++..-.+ +..... ......+.++.|||+||+.|++||
T Consensus 154 ~~~~~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTP 233 (582)
T COG5158 154 LPSTTEALIKIVNGLFSLCVSLGRIPIIRYSGGKNAEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITP 233 (582)
T ss_pred CCCchHHHHHHHhhHHHHHhhcCCcceEEecCCchHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccc
Confidence 88765566799999999999999999999865 899999998875333 221110 000223468999999999999999
Q ss_pred ccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHHHHHHHHH
Q psy8893 247 LATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFIS 326 (820)
Q Consensus 247 Llh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~~~~~~~~ 326 (820)
|+|+||||||+||++++++|.|+++.... .| .+++...++.+|++|.++||+||++|++.|.+.+++++
T Consensus 234 lLh~wTYqaml~Dl~~~~~~~v~~~~~~~---~g--------~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~ 302 (582)
T COG5158 234 LLHQWTYQAMLHDLLGINNNIVTIPSSSV---NG--------PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELK 302 (582)
T ss_pred hHHHHHHHHHHHHHHHhhcCeEEeccccc---cc--------ccceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999975321 11 12344444568999999999999999999999999999
Q ss_pred HHHhhhc-cccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccchHHHHHHH
Q psy8893 327 AQFDTQN-YHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAI 405 (820)
Q Consensus 327 ~~~~~~~-~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~~~~Ie~lI 405 (820)
.++.... .+.+++.+|++||.+||+++++++.+..|++||++|++.++++.|.++.++||++.++.+. ..-|.|+|
T Consensus 303 ~~~~~~~~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~---~~~i~Dli 379 (582)
T COG5158 303 TKAQLRHKENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDV---KSDISDLI 379 (582)
T ss_pred HHHhhhhhhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc---hhhHHHHH
Confidence 9888722 2348999999999999999999999999999999999999999999999999999988764 24455554
Q ss_pred h---CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCCC------C-CcchHh
Q psy8893 406 A---HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSG------T-RQYTLL 475 (820)
Q Consensus 406 ~---~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~~------~-~~~~~i 475 (820)
. .+....+||||+|||+++++|+ .++++.++....+.||++++..+.+|..+|.+..++... . ..+..+
T Consensus 380 ~~l~~~~~E~~klRllilysL~~~~~-~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~ 458 (582)
T COG5158 380 ELLESGVEEDDKLRLLILYSLTKDGL-IKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQW 458 (582)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCc
Confidence 3 2333336999999999999998 788898999999999999999999999999886554211 1 011111
Q ss_pred HHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccC-CCcccccccccccccccccccccccc
Q psy8893 476 RKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLP-GAVLEETQTTTSSRRNRNTQENKMLT 554 (820)
Q Consensus 476 ~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~-g~~~~~~~~~~~~~~~~~~~~~k~i~ 554 (820)
...+.+- .+++...+..++|+||.|..+++...+..+...+ ....... +-......+ . ++.. +++.
T Consensus 459 ~n~y~~s---~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~--~~~s~~~~s~~~~~~k~-~-~~~~------~~~~ 525 (582)
T COG5158 459 FNTYSLS---REHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFE--PLKSSQQQSLRLSRPKG-R-SRSN------KKIP 525 (582)
T ss_pred ccccccc---cccCCCchHHHHHHhhcchhcccchhhhhhhhcc--cccchhccceeeccccc-c-cccc------cccc
Confidence 1122211 1113456789999999999999999988652111 0000000 000000001 0 1001 2222
Q ss_pred cccceEEEEEEEEEeccchhhHHHHhhC
Q psy8893 555 FQEASLYTIKGIAILDNDGHRLLAKYYD 582 (820)
Q Consensus 555 ~~~~~v~~Iggi~~~e~~g~r~l~k~y~ 582 (820)
++.+.||+|||+||.|.+..+.++...+
T Consensus 526 ~~~~~VfviGG~ty~E~~~~~e~~~~~~ 553 (582)
T COG5158 526 QQRILVFVIGGVTYEELRVLYELNESQN 553 (582)
T ss_pred cceEEEEEECCeehHHHHHHHHHHhhcC
Confidence 2334499999999999999999888776
No 5
>KOG1299|consensus
Probab=100.00 E-value=1.4e-65 Score=546.37 Aligned_cols=509 Identities=17% Similarity=0.251 Sum_probs=418.7
Q ss_pred HHHHHHHHHHHhhcC-CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChhhHHHH
Q psy8893 16 QDFARTQFLELLEKC-SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDII 94 (820)
Q Consensus 16 re~~r~~L~~~L~~~-~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~~i~~I 94 (820)
-...|.++-.|+... ||.|||++|+.|..++|+++..|+++++.|.+++.|++++++.|.+. .||+|+|||+++++.+
T Consensus 4 v~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khL-kcvvfiRPT~eniq~L 82 (549)
T KOG1299|consen 4 VSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHL-KCVVFIRPTPENIQLL 82 (549)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCc-eEEEEeccChHHHHHH
Confidence 456778888888655 58999999999999999999999999999999999999766666665 4788899999999999
Q ss_pred HHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhcCCCCc
Q psy8893 95 ADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDP 174 (820)
Q Consensus 95 ~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~~~~d~ 174 (820)
+++++++ .|..|||||++.++....+.||+++....+..+.|+++||+++++|+|||++|++|.+. ..+++
T Consensus 83 ~~ELrnP--------ry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~-~~w~~ 153 (549)
T KOG1299|consen 83 IEELRNP--------RYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESS-LNWDP 153 (549)
T ss_pred HHHhcCC--------cceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccc-cccCh
Confidence 9999998 49999999999999999999999999999999999999999999999999999999887 66888
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEecC--chhHHHHHHHHHHhcCCCCCCCCccCCCCcceEEEEecCCCccccccccch
Q psy8893 175 TCLYEVAQAIITLQNLYGIIPRVSGKG--PCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLT 252 (820)
Q Consensus 175 s~l~~iA~~L~sL~~~~G~~P~I~~~G--~~a~~va~~l~~~~~e~~~~~~~~~~~~~~~~LIIlDRs~DliTPLlh~~T 252 (820)
..++++.++|.+++..++..|.|||.+ ..|+++|+.+......+... .++......++|+|+||+.|++||||+|||
T Consensus 154 ~~l~R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~E~~l-Fdfr~~~~~p~LLiLDR~~DpvTPLL~qWT 232 (549)
T KOG1299|consen 154 GALTRSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITKESTL-FDFRRTDSPPLLLILDRRDDPVTPLLNQWT 232 (549)
T ss_pred hhhhHhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhhhhhh-cccccCCCCCeEEEEecCCCCCchhhhHHH
Confidence 999999999999999999999999976 58999999887544333333 122344456899999999999999999999
Q ss_pred hhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCC-CChHHHHhhcCCHhHHHHHHHHHHHHHHHHHhh
Q psy8893 253 YEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNS-GDELFAALRDKIFTGVGPYLSKRAKFISAQFDT 331 (820)
Q Consensus 253 YqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~-~D~i~~e~R~~h~~~v~~~L~~~~~~~~~~~~~ 331 (820)
||||+||++||++|+|++... ++++++-++++|++ +|+||+..++.+|+++|..|++.+++||.+.+.
T Consensus 233 YQaMvHEl~gi~nnrvdls~~-----------~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~ 301 (549)
T KOG1299|consen 233 YQAMVHELLGIKNNRVDLSKV-----------PSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKT 301 (549)
T ss_pred HHHHHHHHhccccCEEeeccC-----------CCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999653 23345567899986 899999999999999999999999999986666
Q ss_pred hccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccchHHHHHHHhC-CCC
Q psy8893 332 QNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAH-KKP 410 (820)
Q Consensus 332 ~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~~~~Ie~lI~~-~~~ 410 (820)
+++.+|+.+|+.|+..+|+++++...++.|+.+.+++++.++.+++.++.++||++++..+.....+.|.+++.. ..+
T Consensus 302 -~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs 380 (549)
T KOG1299|consen 302 -NSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVS 380 (549)
T ss_pred -chhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCccc
Confidence 667789999999999999999999999999999999999999999999999999999977776778889999875 699
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCC--CCC-cchHhHHhhcccccccC
Q psy8893 411 LMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNS--GTR-QYTLLRKMMRLTVEDSS 487 (820)
Q Consensus 411 ~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~--~~~-~~~~i~k~l~l~~~~~~ 487 (820)
..|++||+|||+|.+...++.++..+-..+.+. |...-..+..|.+.|....+.+. +.+ ..+-.|+-.+.+
T Consensus 381 ~~d~lrLv~lYaLr~e~~~~~~~~~L~~~l~~~-~~~~~~~v~~ll~~~G~~~R~~dlf~~~~~v~i~R~~~kgl----- 454 (549)
T KOG1299|consen 381 EIDRLRLVALYALRYERHPPNELRQLPQILREQ-GPKKPELVPFLLKYAGLHVRQGDLFGPNDLVPIARRFIKGL----- 454 (549)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHhc-CCCcchhHHHHHHhcCcccccccccCcchhHHHHHHHhhcc-----
Confidence 999999999999999999998888777766654 55444455566666555554311 111 123333333332
Q ss_pred CCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCcccccccccccccccccccccccccccceEEEEEEEE
Q psy8893 488 ELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRRNRNTQENKMLTFQEASLYTIKGIA 567 (820)
Q Consensus 488 ~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~v~~Iggi~ 567 (820)
++...+|.+|.|+++++++++.++..+.++ .+.+ |+. +. .-.||+++||+|||+|
T Consensus 455 ----kgvENVytQH~P~lk~~l~~~~rgRl~~~~--~p~l-~~~---------------~s---~~~pq~IIVfivGGaT 509 (549)
T KOG1299|consen 455 ----KGVENVYTQHQPLLKSTLEDLFRGRLKEID--YPFL-GSQ---------------TS---RDRPQDIIVFIVGGAT 509 (549)
T ss_pred ----CcchhhhhccCHHHHHHHHHHHhcccccCC--Cccc-ccc---------------cc---cCCCceEEEEEECCcc
Confidence 456789999999999999999987544432 1112 111 00 0114556699999999
Q ss_pred EeccchhhHHH
Q psy8893 568 ILDNDGHRLLA 578 (820)
Q Consensus 568 ~~e~~g~r~l~ 578 (820)
|.|.+....+.
T Consensus 510 YEEa~~V~~~N 520 (549)
T KOG1299|consen 510 YEEARVVHELN 520 (549)
T ss_pred HHHHHHHHHHh
Confidence 98855444443
No 6
>KOG1301|consensus
Probab=100.00 E-value=3e-63 Score=534.61 Aligned_cols=546 Identities=16% Similarity=0.226 Sum_probs=421.7
Q ss_pred ChHHHHHHHHHHHHHHhhc-----------CCCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCe
Q psy8893 11 NISLVQDFARTQFLELLEK-----------CSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIAN 79 (820)
Q Consensus 11 ~l~~lre~~r~~L~~~L~~-----------~~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~ 79 (820)
-..+||+.+-..+..||.= -|-|||||+|..+..+||+++++++|++||||.+..|...|+|. +++ +
T Consensus 8 ~~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi-~DV-P 85 (621)
T KOG1301|consen 8 AAASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPI-PDV-P 85 (621)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCC-CCC-C
Confidence 3578999999999999851 24699999999999999999999999999999999999999986 776 7
Q ss_pred EEEEECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHh----cCccCCcceEEEEeeeeeeecCC
Q psy8893 80 VIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQE----NGVLGNFNIIEAFTCNLFPFDND 155 (820)
Q Consensus 80 aIY~i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~----~~v~~~i~~i~e~~ldfipld~d 155 (820)
|||||.||.+|+++|++|+++. .|..||+.|++.++...++.|+. .|...+|.++++-+++|+.+|+|
T Consensus 86 AVYFV~Pt~eNid~i~~Dl~~~--------lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEdd 157 (621)
T KOG1301|consen 86 AVYFVSPTEENIDRIIQDLSKG--------LYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDD 157 (621)
T ss_pred eEEEeCCchHhHHHHHHHHHHh--------hhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecch
Confidence 9999999999999999999987 69999999999999999999986 37777888999999999999999
Q ss_pred eeEecCchhhhhhcCCCC-----ccHHHHHHHHHHHHHHHhCCCCeEEe-cCchhHHHHHHHHHHhcCCC-----CCCC-
Q psy8893 156 LVSMEMELAYREYHLEKD-----PTCLYEVAQAIITLQNLYGIIPRVSG-KGPCVQQVWDLTKRLSLEPK-----NKNV- 223 (820)
Q Consensus 156 lfsLe~p~~f~~l~~~~d-----~s~l~~iA~~L~sL~~~~G~~P~I~~-~G~~a~~va~~l~~~~~e~~-----~~~~- 223 (820)
+|+|.++++|..+..++. +..+.+||++|++++.++|.+|.||| +|..|++||++|.+..++.- ....
T Consensus 158 lFsL~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~aAEmvA~kL~qKLRd~l~d~k~~lft~ 237 (621)
T KOG1301|consen 158 LFSLGMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGGAAEMVARKLDQKLRDNLRDTKNNLFTM 237 (621)
T ss_pred hhhhcccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCCHHHHHHHHHHHHHHHHhHhhcccceec
Confidence 999999999977655542 34578999999999999999999998 89999999999976433321 1100
Q ss_pred -CccCCCCcceEEEEecCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChH
Q psy8893 224 -NQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDEL 302 (820)
Q Consensus 224 -~~~~~~~~~~LIIlDRs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i 302 (820)
....+.+++.|+|+||++|++||+.|.||||||+||+|+.+.|+|+++... + +..+|.+.|+.+|+|
T Consensus 238 ~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~-----~-------~~~~k~yDld~~D~f 305 (621)
T KOG1301|consen 238 DGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES-----K-------RKKKKSYDLDPNDKF 305 (621)
T ss_pred cCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc-----c-------CCCCccccCCCccHH
Confidence 001235889999999999999999999999999999999999999998642 0 123688999999999
Q ss_pred HHHhhcCCHhHHHHHHHHHHHHHHHHHhhhcc-------------ccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHH
Q psy8893 303 FAALRDKIFTGVGPYLSKRAKFISAQFDTQNY-------------HEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELI 369 (820)
Q Consensus 303 ~~e~R~~h~~~v~~~L~~~~~~~~~~~~~~~~-------------~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i 369 (820)
|....+..|++|++.+.+++.+|+++.++.++ ..++...+++.|++||++.++++.+++|++||.++
T Consensus 306 W~~n~~~pFP~VAE~Ve~eL~~Yk~~~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatal 385 (621)
T KOG1301|consen 306 WRRNKGSPFPEVAENVEEELESYKNEEAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATAL 385 (621)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHhhHHHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999987765320 12334489999999999999999999999999999
Q ss_pred HHhhChhHHHHHHHHHHhhhcCCCcccchHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc---
Q psy8893 370 KDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--- 446 (820)
Q Consensus 370 ~~~~~~~~l~~~~~lEq~il~g~d~~~~~~~Ie~lI~~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--- 446 (820)
++.++++.++.+.++|+++..+.-.+..++.+++ ....+.+||||++++|.++....++.+++.++..+.+ .|+
T Consensus 386 L~~IkeR~lD~ff~~E~~~~~~~l~~~~l~~~~~--~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al~e-~~~d~~ 462 (621)
T KOG1301|consen 386 LEQIKERKLDDFFEVEKKIMSTTLDRSLLDILED--GEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENALTE-AGCDLN 462 (621)
T ss_pred HHHHHHhhhhHHHHHhcccccccccHHHHHHHhc--ccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHHHh-cCCchH
Confidence 9999999999999999999873322222333332 2468999999999999999998889999998888755 575
Q ss_pred --cHHHHHHHHHhcCCccccCCCCC-CcchHhHHhhcccccccCCCCCCCccccccccchh--------HHHHHHHHhcC
Q psy8893 447 --QHILTLSNLEQAGLLKNSQNSGT-RQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPL--------SIRLVQRLTRE 515 (820)
Q Consensus 447 --~~~~~l~nL~~lGll~~~~~~~~-~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl--------~~rlve~l~~~ 515 (820)
++...|..+.+++-..+..++++ +.+....|.+. +..+++.+|..-| ++|+||.+..+
T Consensus 463 Al~yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~-----------qg~~~vm~GVKNLlp~~q~lPvT~iveal~~~ 531 (621)
T KOG1301|consen 463 ALKYVKRLKEITKMSSATSAYSGTTTKIVDLFEKLYS-----------QGSSFVMEGVKNLLPKKQNLPVTRIVEALMDP 531 (621)
T ss_pred HHHHHHHHHHHhhcccccccccCCcccHHHHHHHHhh-----------ccHHHHHhhHHhcCcccccCcHHHHHHHhhCC
Confidence 46667777777773332222122 12222222221 2345555554322 46777777655
Q ss_pred CCCChhhhhhccCCCcccccccccccc-cc-cccccccccccccceEEEEEEEEEeccchhhHHHHhhCC---CCCC--C
Q psy8893 516 PSIIPQDLLALLPGAVLEETQTTTSSR-RN-RNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDP---NILS--T 588 (820)
Q Consensus 516 ~~~~~~~~l~~l~g~~~~~~~~~~~~~-~~-~~~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~---~~~~--~ 588 (820)
. ++|.++.+.+.++.. ++ ......++-.+++++||+|||-.|.|.+.+..++|--.. -+|. .
T Consensus 532 ~-----------sn~etddYl~~DPk~~k~~~~~~~~~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTe 600 (621)
T KOG1301|consen 532 K-----------SNPETDDYLYFDPKLSKGGSSSLPIKRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTE 600 (621)
T ss_pred C-----------CCccccceEeeccccccCCCccccccccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchh
Confidence 2 233333333332211 11 112223444567888999999999999999999986654 2232 2
Q ss_pred hHHHHHHHHHHHHHh
Q psy8893 589 VKDQKAFEKNLFNKT 603 (820)
Q Consensus 589 ~~~q~~~e~~i~~~~ 603 (820)
.-.-.+|.+++-+..
T Consensus 601 Iln~~eFl~qls~Lg 615 (621)
T KOG1301|consen 601 ILNAREFLEQLSRLG 615 (621)
T ss_pred cCCHHHHHHHHHHhc
Confidence 223567777776543
No 7
>KOG3343|consensus
Probab=100.00 E-value=1.1e-43 Score=327.74 Aligned_cols=172 Identities=62% Similarity=0.931 Sum_probs=162.4
Q ss_pred cceEEEEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCCCcEEEecCeEEEEEEeccEEEEEEecCCc
Q psy8893 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHE 636 (820)
Q Consensus 557 ~~~v~~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~e 636 (820)
..++|.|+|+++++.+|+|.++|||++.+.++.++|++|||.+|+|++|++++|..+++.+||||.+.||+|||+|+..|
T Consensus 3 ~~sly~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~E 82 (175)
T KOG3343|consen 3 PLSLYTVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEE 82 (175)
T ss_pred ccchhhhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcch
Confidence 35689999999999999999999999987766999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcccCCCCCChhhHHHHHH
Q psy8893 637 NELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQ 716 (820)
Q Consensus 637 NEl~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~~~~~~~e~~~~~a~~ 716 (820)
|||+|.+++++++++|+.+++.||+++.+++|+|.+
T Consensus 83 NEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i-------------------------------------------- 118 (175)
T KOG3343|consen 83 NELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLI-------------------------------------------- 118 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccc--------------------------------------------
Confidence 999999999999999999999999999999988754
Q ss_pred HHHHhhhccCcchhhhhhhhhccccccccccccceeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhcccCCCC
Q psy8893 717 SGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDI 796 (820)
Q Consensus 717 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~~~~~ 796 (820)
+||+||+|||| |||||||++||+||+++++|.
T Consensus 119 ------------------------------------~L~~DEiiD~G------------vILEtdp~~ia~rv~~~~~~~ 150 (175)
T KOG3343|consen 119 ------------------------------------FLALDEIIDGG------------VILETDPNQIAQRVALRPTDE 150 (175)
T ss_pred ------------------------------------eeehhhhccCc------------eEEecCHHHHHHHhccCCCCc
Confidence 45566677889 999999999999999999999
Q ss_pred CCchhhHHHH-HHHHHHHHHhhhhC
Q psy8893 797 PLGEQTVAQV-FQSAKEQLKWSLLK 820 (820)
Q Consensus 797 ~~~e~~~~~~-~~~~~~~~~~~~~~ 820 (820)
|++||+++|. |++||||++|||||
T Consensus 151 ~~~eq~~~~~~~q~A~eq~k~~llk 175 (175)
T KOG3343|consen 151 PLSEQSVAQGFLQSAKEQIKWSLLK 175 (175)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999 99999999999997
No 8
>KOG0936|consensus
Probab=100.00 E-value=2.6e-38 Score=289.12 Aligned_cols=166 Identities=19% Similarity=0.339 Sum_probs=155.2
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCC---CcEEE------ecCeEEEEEEeccEEEEEEe
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRAN---AEIIM------LEGLTCVYKSNVDLFFYVMG 632 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~---~~~~~------~~~~~ivyr~~~~l~~~~~~ 632 (820)
||+++++.+..|++||+|+|+| + +++.|+++.+++|+.+++++ |++++ -.|.+++||+||+|||++|+
T Consensus 1 MI~AvlifNn~gkPRL~KFY~p--~-~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv 77 (182)
T KOG0936|consen 1 MIKAVLIFNNKGKPRLVKFYTP--V-DEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV 77 (182)
T ss_pred CeeEEEEecCCCCcceeeecCc--C-ChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEE
Confidence 6899999999999999999998 3 78999999999999998765 44432 25899999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcccCCCCCChhhHH
Q psy8893 633 SSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVA 712 (820)
Q Consensus 633 ~~~eNEl~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~~~~~~~e~~~~ 712 (820)
|++||||+++|+||+|||+||+|| .||||+||+||++++|.+|+|+|+||+|+|||.+.|+..+..+. +++.++.|++
T Consensus 78 D~sEsEL~iLDLIQvfVEtLDkCF-~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~n-kleks~~~~~ 155 (182)
T KOG0936|consen 78 DSSESELGILDLIQVFVETLDKCF-ENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQN-KLEKSEDGLI 155 (182)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHH-HhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhc-hhhhccCCcc
Confidence 999999999999999999999999 59999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHhhhccCcchhhh
Q psy8893 713 QVFQSGYLQTRSLSISSNLL 732 (820)
Q Consensus 713 ~a~~~a~~~~~~~~~~~~~~ 732 (820)
.|+++|..+.+++++|+-=+
T Consensus 156 ~~p~~~~~~~~~~~~~e~~~ 175 (182)
T KOG0936|consen 156 GAPTRAVFAVKNQNLPEIPR 175 (182)
T ss_pred cCchhhhhhhhhcccccCcc
Confidence 99999999999999998655
No 9
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=99.98 E-value=1.5e-32 Score=248.79 Aligned_cols=136 Identities=23% Similarity=0.382 Sum_probs=129.0
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC---CCcEEEecCeEEEEEEeccEEEEEEecCCccH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA---NAEIIMLEGLTCVYKSNVDLFFYVMGSSHENE 638 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~---~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNE 638 (820)
+|+++++.+.+|+.||+|||.| + +..+|+++.++|++.++.+ .+|++.+.+.++|||+||+|||++|+|.+|||
T Consensus 1 ~i~~vli~nrqgk~RL~K~yt~--~-~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnE 77 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWYTP--V-SDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNE 77 (152)
T ss_pred CeEEEEEEcCCCceeeeEeecc--C-CcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCc
Confidence 5789999999999999999988 2 7888999999999999765 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 639 LILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 639 l~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
|+++++||.|||+||++| |||||+|++|||.++|.||||+|.||.|.|+|+..|++++...+
T Consensus 78 l~iL~lIh~FVE~lDr~F-gnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~ld 139 (152)
T COG5030 78 LIILELIHNFVEILDRFF-GNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALD 139 (152)
T ss_pred chHHHHHHHHHHHHHHHh-ccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHH
Confidence 999999999999999999 79999999999999999999999999999999999999998764
No 10
>KOG0935|consensus
Probab=99.96 E-value=2.3e-29 Score=221.51 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=123.3
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCC----CcEEEecCeEEEEEEeccEEEEEEecCCcc
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRAN----AEIIMLEGLTCVYKSNVDLFFYVMGSSHEN 637 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~----~~~~~~~~~~ivyr~~~~l~~~~~~~~~eN 637 (820)
||..+++.|.+|+.+|+|||-+ + +..++++.+.++|+.++.++ +++..+.+.++++|+||+|||++|+|..+|
T Consensus 1 mi~FILiqNr~Gk~RLak~yv~--~-dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDn 77 (143)
T KOG0935|consen 1 MIRFILIQNRAGKTRLAKWYVQ--F-DDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDN 77 (143)
T ss_pred CeEEEEEEccccceeheeeeec--c-CchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCc
Confidence 5788999999999999999976 3 66777899999999997664 455555666677779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 638 ELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 638 El~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
|++.++.||.|||+||.+| +||||+||+|||.||++|+|||+.+|.|.||++..++.|+.+..
T Consensus 78 elayLe~IHlFVEvLd~fF-~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~ 140 (143)
T KOG0935|consen 78 ELAYLEHIHLFVEVLDEFF-HNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQ 140 (143)
T ss_pred hHHHHHHHHHHHHHHHHHh-ccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999 79999999999999999999999999999999999999998765
No 11
>KOG0934|consensus
Probab=99.95 E-value=7.3e-29 Score=224.84 Aligned_cols=136 Identities=24% Similarity=0.413 Sum_probs=127.2
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC---CCcEEEecCeEEEEEEeccEEEEEEecCCccH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA---NAEIIMLEGLTCVYKSNVDLFFYVMGSSHENE 638 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~---~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNE 638 (820)
||..+++.+.+|+.+|+|||.+ + +.++|+.+++++.+.+..+ .|+++.+.++++|||+||.|||+++++.+|||
T Consensus 1 mi~f~LlvsrQGk~rL~k~y~~--~-~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNE 77 (145)
T KOG0934|consen 1 MIKFFLLVSRQGKTRLQKWYEA--L-SIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNE 77 (145)
T ss_pred CeEEEEEEeccCceehhHHHhh--h-cHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCch
Confidence 5788999999999999999998 3 7899999999999998543 38999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 639 LILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 639 l~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
|+++|+||.+||.||++| |+|||+|++|||+++|.||||++.+|.+.|+.++..+..+..++
T Consensus 78 L~~LE~IH~~vE~lDkYF-g~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad 139 (145)
T KOG0934|consen 78 LAILEFIHNYVELLDKYF-GSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQAD 139 (145)
T ss_pred hhHHHHHHHHHHHHHHHh-ccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhh
Confidence 999999999999999999 79999999999999999999999999999999998888876554
No 12
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=99.94 E-value=4.5e-27 Score=227.15 Aligned_cols=136 Identities=35% Similarity=0.662 Sum_probs=120.5
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC---CCcEEEecCeEEEEEEeccEEEEEEecCCccH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA---NAEIIMLEGLTCVYKSNVDLFFYVMGSSHENE 638 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~---~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNE 638 (820)
||.++++.+.+|.++++|||.+ . +.++++.+++++.+++..+ .++++.++++++|||+++||||+++++.+|||
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNe 77 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRD--V-SEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENE 77 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESST--S-TSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBH
T ss_pred CEEEEEEEcCCCCEEEehhcCC--c-cHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccch
Confidence 6899999999999999999965 3 4555566666666665433 38999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 639 LILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 639 l~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
++++++||.++++|+.+| |+|||+++++||++||++|||+|++|+|+|||++.|++|+.+++
T Consensus 78 l~~~e~l~~~v~~l~~~~-~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~ 139 (141)
T PF01217_consen 78 LLLLEFLHRLVEVLDDYF-GNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQD 139 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH-SS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCC
T ss_pred HHHHHHHHHhhhhhhhhh-ccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 49999999999999999999999999999999999999999987
No 13
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-26 Score=210.17 Aligned_cols=168 Identities=30% Similarity=0.464 Sum_probs=154.2
Q ss_pred ceEEEEEEEEEeccchhhHHHHhhCCC--------CCCChHHHHHHHHHHHHHhhcCCCcEEEecCeEEEEEEeccEEEE
Q psy8893 558 ASLYTIKGIAILDNDGHRLLAKYYDPN--------ILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFY 629 (820)
Q Consensus 558 ~~v~~Iggi~~~e~~g~r~l~k~y~~~--------~~~~~~~q~~~e~~i~~~~~~~~~~~~~~~~~~ivyr~~~~l~~~ 629 (820)
+++|.|.|+++++.+|.|.+.|||.|. +|.+.+++++||+++|+|+.+...+|..|+|..|+|+++-|+.||
T Consensus 3 lsLy~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~~~Il~f~d~lV~~k~~~dv~~y 82 (187)
T COG5541 3 LSLYDVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFYDRLVMCKRLDDVLLY 82 (187)
T ss_pred cchheeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCccceeeEcceeeeeeeehhEEEE
Confidence 568999999999999999999999872 577899999999999999999999999999999999999999999
Q ss_pred EEecCCccHHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc-C---CCC
Q psy8893 630 VMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV-D---DIP 705 (820)
Q Consensus 630 ~~~~~~eNEl~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~-~---~~~ 705 (820)
++++.+|||..+.+++..|..+|+.+++...+|+.+.+|||.+.+++||.||+|+|+||+++.|++||+... . +.-
T Consensus 83 iv~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K~p~~E~q~~~ 162 (187)
T COG5541 83 IVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPPNFEGQDGM 162 (187)
T ss_pred EecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCCCCCcchhhhh
Confidence 999999999999999999999999999888899999999999999999999999999999999999998732 1 111
Q ss_pred CChhhHHHHHHHHHHhhhcc
Q psy8893 706 LGEQTVAQVFQSGYLQTRSL 725 (820)
Q Consensus 706 ~~e~~~~~a~~~a~~~~~~~ 725 (820)
.-+.|+.++|..|++.+.-.
T Consensus 163 ~~~~GF~~~~~kA~~k~ser 182 (187)
T COG5541 163 KVPRGFASFLHKATKKLSER 182 (187)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 35679999999999877644
No 14
>KOG3343|consensus
Probab=98.69 E-value=1.1e-08 Score=96.28 Aligned_cols=50 Identities=54% Similarity=0.672 Sum_probs=47.3
Q ss_pred HHHHHcCcEEEecCHHHHHHHHhcccCCCCCChhhHHHH-HHHHHHhhhcc
Q psy8893 676 LDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQV-FQSGYLQTRSL 725 (820)
Q Consensus 676 lDE~v~~G~i~Et~~~~I~~rv~~~~~~~~~~e~~~~~a-~~~a~~~~~~~ 725 (820)
+||+||||+|+||||+.|++|+..+.++.+++||+++|. +++|++++|-.
T Consensus 122 ~DEiiD~GvILEtdp~~ia~rv~~~~~~~~~~eq~~~~~~~q~A~eq~k~~ 172 (175)
T KOG3343|consen 122 LDEIIDGGVILETDPNQIAQRVALRPTDEPLSEQSVAQGFLQSAKEQIKWS 172 (175)
T ss_pred hhhhccCceEEecCHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999998889999999999 99999998854
No 15
>KOG0938|consensus
Probab=98.30 E-value=1.5e-06 Score=91.20 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=115.2
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHh--h--cCCCcEEEecCeEEEEEEeccEEEEEEecCCcc
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKT--H--RANAEIIMLEGLTCVYKSNVDLFFYVMGSSHEN 637 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~--~--~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eN 637 (820)
||+|+++.+..|...+.|.|..++- +=.-++|+-- . ...+.+...+....+|-+-.+||++.+..++.|
T Consensus 1 misglfi~n~rGevlink~fr~dlk-------rs~~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~N 73 (446)
T KOG0938|consen 1 MISGLFIYNLRGEVLINKTFRDDLK-------RSIVDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNAN 73 (446)
T ss_pred CcceEEEEeccCcEEEehhhhhhhh-------hhHHHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCc
Confidence 5899999999999999999976531 1233445432 2 234788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 638 ELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 638 El~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
=.+..+++--+...+..|| |...|..+-+||-.+|=+||||+|-|+.+.|+++.+...+..+.
T Consensus 74 va~v~eFl~kl~avm~aYf-gk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~ 136 (446)
T KOG0938|consen 74 VAAVFEFLYKLDAVMNAYF-GKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKG 136 (446)
T ss_pred hhhHHHHHHHHHHHHHHHh-cccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhh
Confidence 9999999999999999999 69999999999999999999999999999999999999888754
No 16
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.7e-05 Score=74.51 Aligned_cols=85 Identities=20% Similarity=0.131 Sum_probs=64.8
Q ss_pred CChhhHHHHHHHHHHhh--------hccCcchhhhhhhhhccccccccccccceeeeeecccccCCCCcccCCCCceeEE
Q psy8893 706 LGEQTVAQVFQSGYLQT--------RSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEII 777 (820)
Q Consensus 706 ~~e~~~~~a~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 777 (820)
-.|-=+-|.|..-+.++ .++|+-.|-| .++|.+||.+|+| ||
T Consensus 89 eNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYD------------------qivl~vdEtid~G------------vi 138 (187)
T COG5541 89 ENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYD------------------QIVLLVDETIDEG------------VI 138 (187)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhc------------------eEEEeeehhcccc------------eE
Confidence 34444555555444433 4566777777 8999999999999 99
Q ss_pred EccChhHHHHHhccc-C---CCCCCchhhHHHHHHHHHHHHHhhhhC
Q psy8893 778 QEADSSAVVQRVALR-V---DDIPLGEQTVAQVFQSAKEQLKWSLLK 820 (820)
Q Consensus 778 le~d~~~i~~rv~~~-~---~~~~~~e~~~~~~~~~~~~~~~~~~~~ 820 (820)
|||+|..||+||+.+ . .++---+.+.+.+|+.|++.+.-.+.|
T Consensus 139 let~s~~ia~rv~K~p~~E~q~~~~~~~GF~~~~~kA~~k~ser~~k 185 (187)
T COG5541 139 LETKSDEIADRVPKPPNFEGQDGMKVPRGFASFLHKATKKLSERSNK 185 (187)
T ss_pred eecChHHHHHhCCCCCCcchhhhhccchhHHHHHHHHHHHHHHHHhc
Confidence 999999999999994 2 244446889999999999999866554
No 17
>KOG2740|consensus
Probab=97.54 E-value=0.00054 Score=73.33 Aligned_cols=134 Identities=16% Similarity=0.281 Sum_probs=95.2
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC----CCcEEEecCeEEEEEEec-cEEEEEEecCCc
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA----NAEIIMLEGLTCVYKSNV-DLFFYVMGSSHE 636 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~----~~~~~~~~~~~ivyr~~~-~l~~~~~~~~~e 636 (820)
|+..+.+.+..|.-.|.|....... -+.++...|+.-.+. +.-.+.--.+-..|.-|. +++|+.+...+-
T Consensus 1 mi~siflidtsg~l~lek~~~g~t~-----~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~ 75 (418)
T KOG2740|consen 1 MILSIFLIDTSGDLLLEKHLKGSTV-----VRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVET 75 (418)
T ss_pred CeeEEEEEcCCchhhhhHhhCCcee-----eeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccC
Confidence 4677888899999999887763211 123344444443321 122333333333333333 466666666555
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 637 NELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 637 NEl~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
--|.+.|++|.++++|..|| |..++.-+-+|++.|+.+||||||+|.-+-|+++.+-+-|....
T Consensus 76 pPL~~iefL~rv~dv~~eyF-g~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps 139 (418)
T KOG2740|consen 76 PPLMVIEFLHRVVDVLLEYF-GGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPS 139 (418)
T ss_pred CChhHHHHHHHHHHHHHHHh-cccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChH
Confidence 68999999999999999999 69999999999999999999999999999999987777665543
No 18
>KOG0937|consensus
Probab=97.10 E-value=0.0036 Score=69.42 Aligned_cols=134 Identities=21% Similarity=0.383 Sum_probs=109.0
Q ss_pred EEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhh-cCCCcEEEecCeEEEEEEeccEEEEEEecCCccHHHHH
Q psy8893 564 KGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTH-RANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILM 642 (820)
Q Consensus 564 ggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~-~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNEl~l~ 642 (820)
.++.+++..|..+.+|-|..++ ....-..|-+.++.+.. .....++..+|...+|-+..+||+++++..+-|=..++
T Consensus 2 sa~fild~~G~~lisr~yr~dv--~~s~~~~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v~ 79 (424)
T KOG0937|consen 2 SAVFILDHKGEVLISRDYRGDV--PMSSTEKFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALVL 79 (424)
T ss_pred ceEEEEcCCCcEeEeecccccC--ChhhhhhHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHHH
Confidence 4677888899999999997764 33444455555555542 22356888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcc
Q psy8893 643 SVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALR 700 (820)
Q Consensus 643 ~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~ 700 (820)
++++.+++++..+|+ .+.|..+..|+..++=.|||+.|=|+.+-|++..+-+=+.+.
T Consensus 80 ~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~ 136 (424)
T KOG0937|consen 80 SFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK 136 (424)
T ss_pred HHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence 999999999999995 999999999999999999999999999655555555555544
No 19
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=96.94 E-value=0.00017 Score=69.69 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=27.0
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhcccC
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRV 793 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~~ 793 (820)
.+.+++||+|||| +|+||||++|+.||++..
T Consensus 109 ~v~~~LDEiid~G------------~i~etd~~~I~~~v~~~~ 139 (141)
T PF01217_consen 109 LVYLILDEIIDGG------------IILETDPNVILKRVTMQD 139 (141)
T ss_dssp HHHHHHHHHEETT------------EES--THHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC------------EEEECCHHHHHHHHHHhh
Confidence 8889999999999 999999999999999754
No 20
>KOG2635|consensus
Probab=94.54 E-value=0.46 Score=52.82 Aligned_cols=131 Identities=15% Similarity=0.287 Sum_probs=107.7
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHH--HH-hh-cCCCcEEEecCeEEEEEEeccEEEEEEecCCcc
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLF--NK-TH-RANAEIIMLEGLTCVYKSNVDLFFYVMGSSHEN 637 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~--~~-~~-~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eN 637 (820)
++.+..+....|+..+++.+.. + .+.++|.-+- -+ +. ..+.-+++-+.++-||+..-.+|++++.....|
T Consensus 2 vvlaa~i~t~~Gk~ivsRqf~~--M----sr~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SN 75 (512)
T KOG2635|consen 2 VVLAASINTKTGKAIVSRQFRE--M----SRSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSN 75 (512)
T ss_pred eEEEEEEeecCCceeeehHhHh--h----hHHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccc
Confidence 5677788889999999987753 2 2556665443 33 22 345778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhc
Q psy8893 638 ELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVAL 699 (820)
Q Consensus 638 El~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~ 699 (820)
=|-=++.|+.|..+...|+. .++|+.+++|.=-+..+.||+|.=|+=..++-+.|-.-+.|
T Consensus 76 IleDl~TL~Lfskvipey~~-slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eM 136 (512)
T KOG2635|consen 76 ILEDLETLRLFSKVIPEYCS-SLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEM 136 (512)
T ss_pred hhhHHHHHHHHHHhchhhhh-hhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhcc
Confidence 99999999999999999995 99999999999999999999999997766666666555544
No 21
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=90.75 E-value=1.8 Score=43.55 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=70.0
Q ss_pred cCeEEEEEEeccEEEEEEecCCccHHHHHHHHHHHHHHHHHHHhcccch-HHHHhCHHHHHHHHHHHHcCcEEEecCHHH
Q psy8893 614 EGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEK-RNVLDNLDIVMLALDEICDGGIIQEADSSA 692 (820)
Q Consensus 614 ~~~~ivyr~~~~l~~~~~~~~~eNEl~l~~~i~~~~e~L~~~~~~~v~e-~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~ 692 (820)
....+|+....++.|.+|.+..||=++.-.+++.|+..|...++ .+.. ..++.+-|.|..+|+.+.=.|-.+=.|.+.
T Consensus 102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~-~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~ 180 (189)
T PF15001_consen 102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLK-ILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRF 180 (189)
T ss_pred CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHH-HhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHH
Confidence 34678999999999999999999999999999999999988885 4444 888999999999999999999998888765
Q ss_pred H
Q psy8893 693 V 693 (820)
Q Consensus 693 I 693 (820)
+
T Consensus 181 ~ 181 (189)
T PF15001_consen 181 V 181 (189)
T ss_pred H
Confidence 3
No 22
>PF14071 YlbD_coat: Putative coat protein
Probab=36.01 E-value=33 Score=32.29 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=12.5
Q ss_pred EEeCCCChHHHHhh
Q psy8893 294 IILNSGDELFAALR 307 (820)
Q Consensus 294 ~~L~~~D~i~~e~R 307 (820)
+.|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56788999999999
No 23
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=30.38 E-value=2.1e+02 Score=32.93 Aligned_cols=103 Identities=20% Similarity=0.318 Sum_probs=63.3
Q ss_pred EEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCCCcE--EEecCeEEEEEEeccEEEEEEecCCccHHHHHHH
Q psy8893 567 AILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEI--IMLEGLTCVYKSNVDLFFYVMGSSHENELILMSV 644 (820)
Q Consensus 567 ~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~~~~--~~~~~~~ivyr~~~~l~~~~~~~~~eNEl~l~~~ 644 (820)
+++..+|++.+++|-+.+ ....--.....|..-+...++++ +.-++.++||-.-+-|+++.+...+|.+-.|..-
T Consensus 15 fIlS~AGKPIysr~G~e~---~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~q 91 (415)
T PF03164_consen 15 FILSSAGKPIYSRYGDED---KLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQ 91 (415)
T ss_pred EEECCCCceeEEecCChH---HHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHH
Confidence 456788999999873321 11112222233333333334444 4558899999999999999999999997777666
Q ss_pred HHHHHHH---------HHHHHhc--ccchHHHHhCHHHH
Q psy8893 645 LNCLYDA---------ISQILRK--NVEKRNVLDNLDIV 672 (820)
Q Consensus 645 i~~~~e~---------L~~~~~~--~v~e~~l~~~~d~v 672 (820)
++.++.. |+++|+. |-+=+.++..-|..
T Consensus 92 L~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~ 130 (415)
T PF03164_consen 92 LDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRF 130 (415)
T ss_pred HHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHH
Confidence 6665554 4445542 34445555555543
No 24
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=28.55 E-value=2.8e+02 Score=25.96 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=57.2
Q ss_pred EEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHH----hhc-----CCCcEEEecCeEEEEEEeccEEEEEEec
Q psy8893 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNK----THR-----ANAEIIMLEGLTCVYKSNVDLFFYVMGS 633 (820)
Q Consensus 563 Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~----~~~-----~~~~~~~~~~~~ivyr~~~~l~~~~~~~ 633 (820)
+.||.+.+.+|...+.-..+.. ++..-+..|... |.. ++| ...-+..|+++.+|--....+++.++++
T Consensus 17 l~~I~itDrDGvpi~~v~~~~~--~~~~~~~~~~~t-f~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias 93 (119)
T PF08923_consen 17 LQAIVITDRDGVPIAKVSSDSA--PESAMRPSLLST-FAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIAS 93 (119)
T ss_dssp EEEEEEEETTS-EEEEEE-TTS---GGGGSHHHHCC-HHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEecCCCC--cchhhhhHHHHH-HHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEec
Confidence 4677788888877765433321 122333344422 222 222 2245678999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHHH
Q psy8893 634 SHENELILMSVLNCLYDAISQI 655 (820)
Q Consensus 634 ~~eNEl~l~~~i~~~~e~L~~~ 655 (820)
.+-|==.++.+-+-+...|..+
T Consensus 94 ~~aN~G~il~l~~~L~~~l~~l 115 (119)
T PF08923_consen 94 SNANTGLILSLEEELAPILNEL 115 (119)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHHHHHHHHH
Confidence 9999888777777666666543
No 25
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=25.70 E-value=47 Score=33.15 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=23.4
Q ss_pred CCCcccC--CCCceeEEEccChhHHHHHhccc
Q psy8893 763 RLPSLCL--RSPTVEIIQEADSSAVVQRVALR 792 (820)
Q Consensus 763 ~~~~~~~--~~~~~~iile~d~~~i~~rv~~~ 792 (820)
|+|+..+ -+|.+-||+|+||..|+.|=..+
T Consensus 99 gLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D 130 (189)
T COG2019 99 GLPSWVLEELNPDVIVLLEADPEEILERRLRD 130 (189)
T ss_pred CCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcc
Confidence 5555333 46889999999999999987765
No 26
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.81 E-value=1.4e+02 Score=31.38 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcccCCCCCChhhHHHHHHHHH
Q psy8893 640 ILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGY 719 (820)
Q Consensus 640 ~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~~~~~~~e~~~~~a~~~a~ 719 (820)
-+..+|+.|...++.+.+ .+ +..|. +.|..+.=++| |...+++++.|+..|..--...+. .+.
T Consensus 96 ~~~~li~~~~~~~~~~~~-~~-e~qLv---~lvl~ia~~Vi--~~~~~~~~~~ll~~v~e~L~~~~~----------~~~ 158 (234)
T COG1317 96 RLAKLIAEFQAELEALKE-VV-EKQLV---QLVLEIARKVI--GKELELDPEALLAAVREALEEVPL----------FAA 158 (234)
T ss_pred HHHHHHHHHHHHHHHHHH-HH-HHHHH---HHHHHHHHHHH--hHHHhcCHHHHHHHHHHHHHhccc----------ccc
Confidence 355677777888887773 33 33332 56667777777 556788888888887643211111 111
Q ss_pred HhhhccCcchhhhhhhhhccccccccccccceeeeeecccccCCCCcccCCCCceeEEEccChhHH
Q psy8893 720 LQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAV 785 (820)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i 785 (820)
....+- =|+++..|-..+. ..++.+... +-+++=+.+-.|| .|+|||...|
T Consensus 159 ~i~l~V-nP~d~e~i~~~~~-~~~~~~~~~-l~l~~D~~l~~Gg------------C~IeTe~G~i 209 (234)
T COG1317 159 AITLRV-NPDDLEIIRQQLD-EELSLLGWR-LELVADPALSPGG------------CIIETEFGII 209 (234)
T ss_pred CeEEEE-CHHHHHHHHHHHH-HHHhhcchh-eeeccCCCCCCCC------------eEEEecCccc
Confidence 111111 1555555554444 344444444 4445445555566 9999997655
No 27
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=21.50 E-value=2.5e+02 Score=27.99 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCCCCCcchHhHHhhcc
Q psy8893 426 SGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRL 481 (820)
Q Consensus 426 ~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~~~~~~~~i~k~l~l 481 (820)
+.++.+-+-.+.+++++.||++.-..=..|..+|+=....+++...|..++|.+..
T Consensus 53 NNISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~~~~~~~~~~~e~~rk~~sF 108 (186)
T PF12983_consen 53 NNISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDMSSLNSSNNDYENIRKTLSF 108 (186)
T ss_pred cCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCcccccccCCCHHHHHhhhhH
Confidence 57888888889999999999986666677888886544432223356777776543
No 28
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=21.15 E-value=48 Score=31.64 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=23.1
Q ss_pred eeecccccCCCCcccCCCCceeEEEccChhHHHHHhcc
Q psy8893 754 LSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVAL 791 (820)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~ 791 (820)
-.+||++-|| -|.||++..|..||..
T Consensus 112 ~ILdE~i~gG------------~i~Es~~~~vl~~v~~ 137 (152)
T COG5030 112 AILDEMILGG------------EIIESSKNEVLEHVYA 137 (152)
T ss_pred HHHHHHHhCC------------eeeecCHHHHHHHHHH
Confidence 3579999999 9999999999999974
No 29
>KOG0936|consensus
Probab=20.39 E-value=52 Score=31.78 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.9
Q ss_pred CCChhhHHHHHHHHHHhhhccCcchhhhhhhhhccccccccccccceee------eeecccccCCCCcccCCCCceeEEE
Q psy8893 705 PLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMI------LSSHSGCDGRLPSLCLRSPTVEIIQ 778 (820)
Q Consensus 705 ~~~e~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iil 778 (820)
.-+|-|+-.-++.-++.+-+- .+..|=-|+++ -.++|+|-|| .+|
T Consensus 80 sEsEL~iLDLIQvfVEtLDkC-----------------F~nVcELDliF~~~k~h~iL~EiV~GG------------mVl 130 (182)
T KOG0936|consen 80 SESELGILDLIQVFVETLDKC-----------------FENVCELDLIFNWQKVHAILAEIVMGG------------MVL 130 (182)
T ss_pred CcchhHHHHHHHHHHHHHHHH-----------------HHhhhhhhheeeHHHHHHHHHHHHhCC------------eEE
Confidence 346677777777777766542 23344445554 2479999999 999
Q ss_pred ccChhHHHHHhcc
Q psy8893 779 EADSSAVVQRVAL 791 (820)
Q Consensus 779 e~d~~~i~~rv~~ 791 (820)
||..+.|+.-|--
T Consensus 131 ETn~neIv~av~~ 143 (182)
T KOG0936|consen 131 ETNMNEIVAAVDE 143 (182)
T ss_pred eccHHHHHHHHHH
Confidence 9999999876654
Done!