Query psy8893
Match_columns 820
No_of_seqs 417 out of 1475
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_A UNC18; exocytosis, exoc 100.0 5.9E-84 2E-88 767.9 46.9 547 14-604 3-617 (650)
2 1epu_A S-SEC1; parallel beta-s 100.0 1.9E-83 6.6E-88 758.1 35.8 522 14-579 2-560 (591)
3 3puk_A Syntaxin-binding protei 100.0 2.8E-82 9.7E-87 742.7 31.4 541 13-603 8-581 (592)
4 1dn1_A NSEC1, syntaxin binding 100.0 6.3E-81 2.1E-85 731.6 42.0 546 14-602 5-585 (594)
5 3c98_A Syntaxin-binding protei 100.0 8.3E-80 2.8E-84 728.8 41.4 551 8-601 11-596 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.5E-77 1.2E-81 711.5 33.7 552 13-602 17-661 (671)
7 3tjz_C Coatomer subunit zeta-1 100.0 1.3E-33 4.4E-38 273.2 13.2 146 557-703 7-152 (153)
8 1w63_Q Adapter-related protein 99.9 6.2E-27 2.1E-31 228.6 13.4 136 562-701 1-139 (158)
9 2vgl_S AP-2 complex subunit si 99.9 2.6E-26 9E-31 220.5 14.3 136 562-701 1-139 (142)
10 1y9j_A SEC1 family domain cont 99.9 5.5E-23 1.9E-27 198.4 8.8 125 14-148 21-159 (159)
11 2vgl_M AP-2 complex subunit MU 99.8 2.3E-20 8E-25 211.6 10.2 137 562-701 1-137 (435)
12 1w63_M Adaptor-related protein 99.8 2.7E-20 9.2E-25 210.3 8.1 139 562-703 2-141 (423)
13 3tjz_C Coatomer subunit zeta-1 97.1 6.8E-05 2.3E-09 72.0 -0.8 34 751-796 120-153 (153)
14 1w63_Q Adapter-related protein 92.2 0.025 8.7E-07 54.3 -0.0 30 751-792 109-138 (158)
15 2vgl_S AP-2 complex subunit si 91.0 0.033 1.1E-06 52.5 -0.8 28 751-790 109-136 (142)
16 2vgl_M AP-2 complex subunit MU 77.7 0.37 1.3E-05 54.0 -0.8 32 751-794 107-138 (435)
17 1w63_M Adaptor-related protein 72.7 0.25 8.6E-06 55.1 -3.8 33 751-795 109-141 (423)
18 3he4_B Synzip5; heterodimeric 45.9 39 0.0013 23.7 4.7 33 336-368 2-34 (46)
19 3cpt_A Mitogen-activated prote 27.1 1.7E+02 0.006 26.9 7.5 88 563-653 38-134 (143)
No 1
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.9e-84 Score=767.93 Aligned_cols=547 Identities=12% Similarity=0.174 Sum_probs=443.1
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893 14 LVQDFARTQFL-ELLEKC---SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK 89 (820)
Q Consensus 14 ~lre~~r~~L~-~~L~~~---~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~ 89 (820)
+||+.+|++|+ ++| ++ +|||+||+|+.+.++||+++++++|+++||++++.|++.|.|. ++ .+|||||+|+.+
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~-~~-~~aIyfv~Pt~~ 79 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVL-PQ-FHGVYFIEPTEE 79 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCB-TT-SEEEEEECSCHH
T ss_pred cHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCC-CC-CCEEEEEcCCHH
Confidence 48999999999 999 88 7999999999999999999999999999999999999988764 65 479999999999
Q ss_pred hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893 90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH 169 (820)
Q Consensus 90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~ 169 (820)
++++|++|+++... .|+.|||+|+|.++...++.|+++++.+.+.++.|+++||+|+|+|+|||++|++|..+|
T Consensus 80 ni~~i~~d~~~~~~------~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~ 153 (650)
T 2xhe_A 80 NLDYVIRDFADRTP------TYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYY 153 (650)
T ss_dssp HHHHHHHHHHSSSC------SBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHH
T ss_pred HHHHHHHHHhhcCC------CcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhc
Confidence 99999999998421 699999999999999999999999999988899999999999999999999999999999
Q ss_pred C-CCCccHHHHHHHHHHHHHHHhCCCCeEEecCc---hhHHHHHHHHH-Hhc--CCCCCCCCccCCCCcceEEEEecCCC
Q psy8893 170 L-EKDPTCLYEVAQAIITLQNLYGIIPRVSGKGP---CVQQVWDLTKR-LSL--EPKNKNVNQCKTSQISQLILIDRNVD 242 (820)
Q Consensus 170 ~-~~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~---~a~~va~~l~~-~~~--e~~~~~~~~~~~~~~~~LIIlDRs~D 242 (820)
. .++.+.++.+|++|+++|.++|.+|.|||.|+ .|++||+++.+ +.. +... ....+...++.|||+||++|
T Consensus 154 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~--~~~~~~~~~~~LiIlDR~~D 231 (650)
T 2xhe_A 154 GSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGL--INAREGKLKSQFLILDRAVD 231 (650)
T ss_dssp STTGGGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTS--CCCCCCSSCCEEEEECGGGC
T ss_pred CCccchHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCc--ccCCCCCCCCEEEEEcCCcc
Confidence 5 56788999999999999999999999999885 69999999985 432 2111 11123456899999999999
Q ss_pred ccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHHHHH
Q psy8893 243 VLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRA 322 (820)
Q Consensus 243 liTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~~~~ 322 (820)
++|||+||||||||+||+|||++|+|+++.... .+ ..+++++.||++|++|.++||+||++|++.|++++
T Consensus 232 ~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~---~~-------~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~ 301 (650)
T 2xhe_A 232 LKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA---GG-------REQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSF 301 (650)
T ss_dssp SSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS---SC-------CSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHH
T ss_pred hhhhccccchHHHHHHHHhcCcCCEEEEEecCC---CC-------CccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999999999999999999999975421 11 12368899999999999999999999999999999
Q ss_pred HHHHHHHhhhc------cccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCc--
Q psy8893 323 KFISAQFDTQN------YHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDT-- 394 (820)
Q Consensus 323 ~~~~~~~~~~~------~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~-- 394 (820)
++|++++++.+ .+..+++||++||++||+++++++.++.|++||++|++.+++ .|.+++++||++++|.|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g 380 (650)
T 2xhe_A 302 DEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDG 380 (650)
T ss_dssp HHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSC
T ss_pred HHHHHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccc
Confidence 99999887622 145689999999999999999999999999999999999999 999999999999999876
Q ss_pred ---ccchHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc--cHHHHHHHHHhcCCccccCCCC
Q psy8893 395 ---DKALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--QHILTLSNLEQAGLLKNSQNSG 468 (820)
Q Consensus 395 ---~~~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--~~~~~l~nL~~lGll~~~~~~~ 468 (820)
+...+.|+++|. ...+..|+|||+|||+++++|+++++++ +++++||+ +++.++.||+++|+...+...+
T Consensus 381 ~~~~~~~~~i~~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~----~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~ 456 (650)
T 2xhe_A 381 NKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELN----NLLDNANIATPSRSAIYNLEMLGATVVADRRG 456 (650)
T ss_dssp CBCCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHH----HHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCC
T ss_pred cchhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHcCCCHHHHHHHHHHHHhCCcccccccc
Confidence 335788888886 5789999999999999999999999986 68999999 8999999999999988765212
Q ss_pred CCcchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcC-----CCCChhhhhhc---------------cC
Q psy8893 469 TRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTRE-----PSIIPQDLLAL---------------LP 528 (820)
Q Consensus 469 ~~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~-----~~~~~~~~l~~---------------l~ 528 (820)
++.|...+ ++ ++.+|+||||+|+++|+||.++++ +|+.++.-... .+
T Consensus 457 ~~~~~~~r-------k~------~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (650)
T 2xhe_A 457 RKPKTMKR-------IE------RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGP 523 (650)
T ss_dssp CCCCCCCC-------CC------CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-------------
T ss_pred cccccccc-------cc------cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccc
Confidence 22232111 01 223899999999999999999987 46544321111 11
Q ss_pred CCccc-ccccccccc--------------cccc-----cccccccccccceEEEEEEEEEeccchhhHHHHhhCCCCC--
Q psy8893 529 GAVLE-ETQTTTSSR--------------RNRN-----TQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNIL-- 586 (820)
Q Consensus 529 g~~~~-~~~~~~~~~--------------~~~~-----~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~~~~-- 586 (820)
++... ...|..... .+.+ ..++++++ ||+|||+||.|+++.|.+++..+.+++
T Consensus 524 ~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vi-----VF~iGGvTysEi~al~~ls~~~~~~viig 598 (650)
T 2xhe_A 524 ATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLF-----VFINGTVSYNEIRCAYEVSQSSGYEVYIG 598 (650)
T ss_dssp --------------------------------------CCCSCEEE-----EEEEEEECHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCEEE-----EEEECCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 11100 001110000 0000 12234455 999999999999999999987654432
Q ss_pred -CChHHHHHHHHHHHHHhh
Q psy8893 587 -STVKDQKAFEKNLFNKTH 604 (820)
Q Consensus 587 -~~~~~q~~~e~~i~~~~~ 604 (820)
++.-.-..|.+++-....
T Consensus 599 sT~Iln~~~fl~~l~~l~~ 617 (650)
T 2xhe_A 599 AHNIATPAEFVELVSLLDK 617 (650)
T ss_dssp EEEECCHHHHHHHHHTTTC
T ss_pred eCCcCCHHHHHHHHHHcCC
Confidence 122234577777765543
No 2
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.9e-83 Score=758.14 Aligned_cols=522 Identities=13% Similarity=0.209 Sum_probs=420.8
Q ss_pred HHHHHHHHHHH-HHhhcC---CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893 14 LVQDFARTQFL-ELLEKC---SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK 89 (820)
Q Consensus 14 ~lre~~r~~L~-~~L~~~---~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~ 89 (820)
+|++.+|+++. ++++.+ +|||+||+|+.+.++||+++++++|+++||++++.|++.|.|. ++ .+|||||+|+.+
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~-~~-~~aIy~v~Pt~~ 79 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPL-PL-LEAVYLITPTEE 79 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCE-EE-EEEEEEECCCHH
T ss_pred ChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCC-CC-CCeEEEecCCHH
Confidence 48888999876 666544 6999999999999999999999999999999999999877764 55 479999999999
Q ss_pred hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893 90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH 169 (820)
Q Consensus 90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~ 169 (820)
++++|++|+++...+ .|+.|||+|+|.++..+++.|+++++.+.+.++.|+++||+|+|+|+|||++|++|..+|
T Consensus 80 ni~~i~~d~~~~~~~-----~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~ 154 (591)
T 1epu_A 80 SVKCLMADFQNPDNP-----QYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYY 154 (591)
T ss_dssp HHHHHHHHTSSTTSC-----SEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHH
T ss_pred HHHHHHHHHhhcccc-----cCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhc
Confidence 999999999974211 699999999999999999999999999998899999999999999999999999999999
Q ss_pred CC----CCccHHHHHHHHHHHHHHHhCCCCeEEecCc--hhHHHHHHHHHHhc----CCCCCCCCccCCCCcceEEEEec
Q psy8893 170 LE----KDPTCLYEVAQAIITLQNLYGIIPRVSGKGP--CVQQVWDLTKRLSL----EPKNKNVNQCKTSQISQLILIDR 239 (820)
Q Consensus 170 ~~----~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~--~a~~va~~l~~~~~----e~~~~~~~~~~~~~~~~LIIlDR 239 (820)
.+ ++.+.++.+|++|+++|.++|.+|.|||.|+ .|++||+.+.++.+ +.... .......+++|||+||
T Consensus 155 ~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~--~~~~~~~~~~LiIlDR 232 (591)
T 1epu_A 155 NPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTM--GEGPQKDRSQLLILDR 232 (591)
T ss_dssp CGGGSTTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTT--TCHHHHTSCEEEEEEG
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCceEEEECC
Confidence 86 5678999999999999999999999999886 79999998876332 22221 1123467899999999
Q ss_pred CCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHH
Q psy8893 240 NVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLS 319 (820)
Q Consensus 240 s~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~ 319 (820)
++|++|||+||||||||+||+|||++|+|+++... .+ ..+++++.||++|++|.++||+||++|++.|+
T Consensus 233 ~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~~----~~-------~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 301 (591)
T 1epu_A 233 GFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTG----GN-------EVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVT 301 (591)
T ss_dssp GGCSSGGGSCCCBHHHHHHHHSCCBTTEECC----------------------CEECCGGGSSHHHHTTSBHHHHHHHHH
T ss_pred CccchhhhhhhhhHHHHHHHHhCcCCCEEEEEecC----CC-------CccceEEeCCCCChHHHHHhccCHHHHHHHHH
Confidence 99999999999999999999999999999997531 11 12367899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc--ccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcc--
Q psy8893 320 KRAKFISAQFDTQNY--HEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTD-- 395 (820)
Q Consensus 320 ~~~~~~~~~~~~~~~--~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~-- 395 (820)
++++++++++++ .+ +..+++||++||++||+++++++.++.|++||++|++.+++ .|.+++++||++++|.+.+
T Consensus 302 ~~~~~~~~~~~~-~~~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~ 379 (591)
T 1epu_A 302 KKLKQFADEKRM-GTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGE 379 (591)
T ss_dssp HHHHHHHHHTC---------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSC
T ss_pred HHHHHHHHhccc-cccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccc
Confidence 999999998765 33 45789999999999999999999999999999999999999 9999999999999998753
Q ss_pred ---cchHHHHHHH-hCCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc--cHHHHHHHHHhcCCccccCCCCC
Q psy8893 396 ---KALPYIENAI-AHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--QHILTLSNLEQAGLLKNSQNSGT 469 (820)
Q Consensus 396 ---~~~~~Ie~lI-~~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--~~~~~l~nL~~lGll~~~~~~~~ 469 (820)
..++.|++++ +...+..|+|||+|||+++++|+++++++ +++++||+ +++..+.||+++|+...+++.++
T Consensus 380 ~~k~~~~~i~~~l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~----~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~ 455 (591)
T 1epu_A 380 KIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLA----KLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRR 455 (591)
T ss_dssp BCCCCHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTCBCHHHHH----HHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSC
T ss_pred ccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH----HHHHhcCCCHHHHHHHHHHHHcCCccccCCccc
Confidence 4567788766 46789999999999999999999999987 58999999 79999999999999887653222
Q ss_pred CcchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcC-----CCCChhhhhhccCCCcccc--------cc
Q psy8893 470 RQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTRE-----PSIIPQDLLALLPGAVLEE--------TQ 536 (820)
Q Consensus 470 ~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~-----~~~~~~~~l~~l~g~~~~~--------~~ 536 (820)
+.|.. .+ .... ...++|.+|+||||+|+++|+||.++++ +|..++. +++.... ..
T Consensus 456 ~~~~~-----~~-~~~~-~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~ 523 (591)
T 1epu_A 456 KIPQP-----YH-THNR-KERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNG-----GGPRPSCQQPVSVRYGH 523 (591)
T ss_dssp CCCCT-----TS-GGGS-CCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTS-----CC---------------
T ss_pred ccccc-----cc-cccc-ccCCCCccccccccchhHHHHHHHHhcCCCCcccCcccCC-----CCCccccCCccccccCc
Confidence 23321 00 0111 1246778999999999999999999987 3443321 0110000 00
Q ss_pred cccccccccccccccccccccceEEEEEEEEEeccchhhHHHH
Q psy8893 537 TTTSSRRNRNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAK 579 (820)
Q Consensus 537 ~~~~~~~~~~~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k 579 (820)
|......+. ...+++++ ||+|||+||.|.++.+.+++
T Consensus 524 ~~~~~~~~~-~~~~~~vi-----VF~vGG~Ty~E~~~l~~l~~ 560 (591)
T 1epu_A 524 WHKDKGQAS-YKSGPRLI-----IFVVGGISYSEMRSAYEVTQ 560 (591)
T ss_dssp -----------CCCCEEE-----EEEETCBCHHHHHHHHHHHT
T ss_pred ccCCCCccc-cCCCCeEE-----EEEECCCCHHHHHHHHHHHh
Confidence 110000000 11123344 99999999999999999998
No 3
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=2.8e-82 Score=742.68 Aligned_cols=541 Identities=15% Similarity=0.194 Sum_probs=430.6
Q ss_pred HHHHHHHHHHHHH-HhhcC---CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCCh
Q psy8893 13 SLVQDFARTQFLE-LLEKC---SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIV 88 (820)
Q Consensus 13 ~~lre~~r~~L~~-~L~~~---~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~ 88 (820)
.+||+.+|++|.+ +|+++ ++|||||+|+.+.++||++|++++|+++||++++.|+.+|.|. ++. +|||||+||.
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~-~~~-~aIYfv~Pt~ 85 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPV-RQM-KALYFISPTP 85 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCB-TTS-CEEEEECSCH
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCC-CCC-cEEEEEeCCH
Confidence 4699999999987 89887 6899999999999999999999999999999999999888764 664 7999999999
Q ss_pred hhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhh
Q psy8893 89 KHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREY 168 (820)
Q Consensus 89 ~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l 168 (820)
+||++|++|++++... .|+.|||+|+|.++....+.| ++++.+.|.++.|+++||+|+|+|+|||++|++|..+
T Consensus 86 eni~~i~~dl~~~~~~-----~Y~~~~i~F~~~~~~~lle~L-~~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l 159 (592)
T 3puk_A 86 KSVDCFLRDFGSKSEK-----KYKAAYIYFTDFCPDSLFNKI-KASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYC 159 (592)
T ss_dssp HHHHHHHHHHTGGGCC-----CBSCEEEEESSCCCHHHHHHH-HHSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHH
T ss_pred HHHHHHHHHHhccccc-----cCCeEEEEECCCCCHHHHHHH-HhhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHH
Confidence 9999999999975321 699999999999999999999 8899999989999999999999999999999999999
Q ss_pred cCCC------CccHHHHHHHHHHHHHHHhCCCCeEEecCc---hhHHHHHHHH-HHhcCCCCCCCCccCCCCcceEEEEe
Q psy8893 169 HLEK------DPTCLYEVAQAIITLQNLYGIIPRVSGKGP---CVQQVWDLTK-RLSLEPKNKNVNQCKTSQISQLILID 238 (820)
Q Consensus 169 ~~~~------d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~---~a~~va~~l~-~~~~e~~~~~~~~~~~~~~~~LIIlD 238 (820)
|.++ +.+.++.+|++|+++|.++|.+|.|||.|+ .|++||++++ ++.++............+++.|||+|
T Consensus 160 ~~~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlD 239 (592)
T 3puk_A 160 YSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIID 239 (592)
T ss_dssp SCCSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEE
T ss_pred cCCcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEec
Confidence 9864 356899999999999999999999999985 4789999997 55542221101112336789999999
Q ss_pred cCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHH
Q psy8893 239 RNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYL 318 (820)
Q Consensus 239 Rs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L 318 (820)
|++|++|||+||||||||+||+|||++|.|+++.. | +++++.|+++|++|.++||+||++|++.|
T Consensus 240 R~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~~------g---------~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 240 RGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTD------G---------KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp GGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCSS------S---------SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCccccccccccccHHHHHHHHhcccCCEEEecCC------C---------ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 99999999999999999999999999999999742 1 25789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCccc--
Q psy8893 319 SKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDK-- 396 (820)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~-- 396 (820)
++++++++++++. ..+..+++||++||++||+++++++.++.|++||++|++.+++ .|.+++++||++++|.+.++
T Consensus 305 ~~~~~~~~~~~~~-~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~ 382 (592)
T 3puk_A 305 PKLMKEISSTKKA-TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQR 382 (592)
T ss_dssp CSCSTTTTTCC--------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCS
T ss_pred HHHHHHHHHHhhc-ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchh
Confidence 9999999987766 5556799999999999999999999999999999999999987 89999999999999987542
Q ss_pred ---chHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCcc-HHHHHHHHHhcCCccccCCCCCCc
Q psy8893 397 ---ALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQ-HILTLSNLEQAGLLKNSQNSGTRQ 471 (820)
Q Consensus 397 ---~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~-~~~~l~nL~~lGll~~~~~~~~~~ 471 (820)
..+.|.+++. ...+..|+|||+|||+++++|+++++++ ++++++|++ +...+.||+.+|+...++. +.
T Consensus 383 ~k~~~~~i~~~L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~----~Ll~~~g~~~~~~~i~nl~~lg~~~~~~~---~~ 455 (592)
T 3puk_A 383 VKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLD----RLIHNVKIEDDSDMIRNWSHLGVPIVPPS---QQ 455 (592)
T ss_dssp CSCCHHHHTTTTTSCSCCHHHHHHHHHHHHHHSCBCCHHHHH----HHHHHTCCCTTTHHHHGGGGGTCCSSSSB---SS
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHcCCChHHHHHHHHHHhCCccccCc---cc
Confidence 4566666554 5789999999999999999999999976 678999987 7889999999998765431 11
Q ss_pred chHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCccccccccccccc-----ccc
Q psy8893 472 YTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRR-----NRN 546 (820)
Q Consensus 472 ~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~-----~~~ 546 (820)
++..+ + ..+.+..|.+|||+|++++++|+++++..+. +.++++.++..........+.+ ++.
T Consensus 456 ~~~~r-------k----~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~--~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~ 522 (592)
T 3puk_A 456 AKPLR-------K----DRSAEETFQLSRWTPFIKDIMEDAIDNRLDS--KEWPYCSRCPAVWNGSGAVSARQKPRTNYL 522 (592)
T ss_dssp CCCCC-------C----CCCCCCGGGSCCCCCTTHHHHHHHHTCCCCT--TTSCC--------------------CCCCC
T ss_pred cCccc-------c----cCCCCcceeeeccchHHHHHHHHHHhCCCCc--ccCCccCCCCCCccCCccccccccccccCc
Confidence 11111 1 1245788999999999999999999874332 2233433321100000000111 111
Q ss_pred ---cccccccccccceEEEEEEEEEeccchhhHHHHhhC-CCCC---CChHHHHHHHHHHHHHh
Q psy8893 547 ---TQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYD-PNIL---STVKDQKAFEKNLFNKT 603 (820)
Q Consensus 547 ---~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~-~~~~---~~~~~q~~~e~~i~~~~ 603 (820)
...+++|+ ||+|||+||.|.+..+.+++..+ .+++ ++.-.=+.|..++-...
T Consensus 523 ~~~~~~~~rii-----VFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~l~ 581 (592)
T 3puk_A 523 ELDRKNGSRLI-----IFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581 (592)
T ss_dssp CCCCSCCSEEE-----EEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSSTT
T ss_pred cccccCCCeEE-----EEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhC
Confidence 11234455 99999999999999999999875 2332 22223446666654443
No 4
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=6.3e-81 Score=731.58 Aligned_cols=546 Identities=14% Similarity=0.221 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHH-HhhcC---CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893 14 LVQDFARTQFLE-LLEKC---SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK 89 (820)
Q Consensus 14 ~lre~~r~~L~~-~L~~~---~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~ 89 (820)
+||+.+|++|.+ +|+++ ++|||||+|+.++++||+++++++|+++||++++.|+..|.|. ++. +|||||+||.+
T Consensus 5 ~lk~~~~~~l~~~~l~~~~~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~-~~~-~aIYfv~Pt~~ 82 (594)
T 1dn1_A 5 GLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPL-PSL-EAVYLITPSEK 82 (594)
T ss_dssp CHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCC-TTS-EEEEEECCCHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCC-CCC-ceEEEEeCCHH
Confidence 599999999987 78876 6899999999999999999999999999999999999888774 664 89999999999
Q ss_pred hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893 90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH 169 (820)
Q Consensus 90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~ 169 (820)
||++|++|++++... .|+.|||+|+|.++..+++.|+++++.+.|.++.|+++||+|+|+|+|||++|++|..+|
T Consensus 83 ni~~i~~d~~~~~~~-----~Y~~y~i~Ft~~~~~~~le~La~~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~ 157 (594)
T 1dn1_A 83 SVHSLISDFKDPPTA-----KYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFY 157 (594)
T ss_dssp HHHHHHHTTSSGGGC-----CCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHH
T ss_pred HHHHHHHHHhccccc-----ccceEEEEeCCCCCHHHHHHHHhcchHhhhcchheeeeeeEEccCCEEEecCcchHHHHh
Confidence 999999999864222 699999999999999999999999999999899999999999999999999999999999
Q ss_pred CC----CCccHHHHHHHHHHHHHHHhCCCCeEEecCch--hHHHHHHHHH-H---hcCCCCCCCCccCCCCcceEEEEec
Q psy8893 170 LE----KDPTCLYEVAQAIITLQNLYGIIPRVSGKGPC--VQQVWDLTKR-L---SLEPKNKNVNQCKTSQISQLILIDR 239 (820)
Q Consensus 170 ~~----~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~~--a~~va~~l~~-~---~~e~~~~~~~~~~~~~~~~LIIlDR 239 (820)
.+ ++.+.++.+|++|+++|.++|.+|.|||.|+. |+++|+++.+ + ..+....+. .....++.|||+||
T Consensus 158 ~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~--~~~~~~~~LiIlDR 235 (594)
T 1dn1_A 158 SPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGE--GPDKARSQLLILDR 235 (594)
T ss_dssp CGGGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTC--STTGGGCEEEEEEG
T ss_pred CCcccccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccC--CCCCCCCeEEEEcC
Confidence 84 45778999999999999999999999998864 6777776653 3 222221111 23356789999999
Q ss_pred CCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHH
Q psy8893 240 NVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLS 319 (820)
Q Consensus 240 s~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~ 319 (820)
++|++|||+||||||||+||+|||++|.|+++.... + ..+++++.|+++|++|.++||+||++|++.|+
T Consensus 236 ~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~----~-------~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 236 GFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI----G-------EARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS----S-------SCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CccccccccccccHHHHHHHHhcccCCEEEecCCCC----C-------CccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 999999999999999999999999999999975321 1 12268899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcc----
Q psy8893 320 KRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTD---- 395 (820)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~---- 395 (820)
+++++++++++..+.+..+++||++||++||+++++++.++.|++||++|++.+++ .|.+++++||++++|.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~ 383 (594)
T 1dn1_A 305 RSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKI 383 (594)
T ss_dssp HHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBC
T ss_pred HHHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchh
Confidence 99999999876511356788999999999999999999999999999999999987 8999999999999997753
Q ss_pred -cchHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhC--ccHHHHHHHHHhcCCccccCCCCCCc
Q psy8893 396 -KALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYG--FQHILTLSNLEQAGLLKNSQNSGTRQ 471 (820)
Q Consensus 396 -~~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G--~~~~~~l~nL~~lGll~~~~~~~~~~ 471 (820)
...+.|+++|. ...+..|+|||+|||+++++|+++++++ ++++++| .+++.++.||+++|+...++. ++
T Consensus 384 k~~~~~i~~lL~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~----~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~--~~- 456 (594)
T 1dn1_A 384 KDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLN----KLIQHAQIPPEDSEIITNMAHLGVPIVTDS--TL- 456 (594)
T ss_dssp CCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHH----HHHHHHTCCHHHHHHHHHGGGGTCCCBCCC--GG-
T ss_pred HHHHHHHHHHHhCCCCChHhHHHHHHHHHHHcCCCCHHHHH----HHHHHcCCCHHHHHHHHHHHHhCCcccccc--cc-
Confidence 35678888875 5789999999999999999999999987 5667766 578999999999997654431 10
Q ss_pred chHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCccccccccccccc------cc
Q psy8893 472 YTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRR------NR 545 (820)
Q Consensus 472 ~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~------~~ 545 (820)
+|..+...++ .+.+..|.+|||+|++++++|+++++..+. +.++++.++........+.+.| ++
T Consensus 457 ----~k~~~~~~k~----~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~--~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~ 526 (594)
T 1dn1_A 457 ----RRRSKPERKE----RISEQTYQLSRWTPIIKDIMEDTIEDKLDT--KHYPYISTRSSASFSTTAVSARYGHWHKNK 526 (594)
T ss_dssp ----GCCCCCCCCC----CCCSCCCTTCCCCCHHHHHHHHHHTTCSCT--TTSCCSSCC---------------------
T ss_pred ----cccccccccc----CCCCccceeeccchHHHHHHHHHHhCCCCc--ccCCccCCCCCccccccccccccccccccC
Confidence 1111111111 234567999999999999999999985443 2344443332100000011111 11
Q ss_pred c---cccccccccccceEEEEEEEEEeccchhhHHHHhhC-CCCC---CChHHHHHHHHHHHHH
Q psy8893 546 N---TQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYD-PNIL---STVKDQKAFEKNLFNK 602 (820)
Q Consensus 546 ~---~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~-~~~~---~~~~~q~~~e~~i~~~ 602 (820)
. ...+++++ ||+|||+||.|.+..+.+++.++ .+++ ++.-.=+.|..++-..
T Consensus 527 ~~~~~~~~~rii-----vFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l 585 (594)
T 1dn1_A 527 APGEYRSGPRLI-----IFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 585 (594)
T ss_dssp -----CCCCEEE-----EEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTT
T ss_pred CccccccCCcEE-----EEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHh
Confidence 0 11123444 99999999999999999999875 3433 2233344666665443
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=8.3e-80 Score=728.75 Aligned_cols=551 Identities=13% Similarity=0.219 Sum_probs=425.5
Q ss_pred CCCChHHHHHHHHHHHH-HHhhcCC---CceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEE
Q psy8893 8 GKVNISLVQDFARTQFL-ELLEKCS---GKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFI 83 (820)
Q Consensus 8 ~~~~l~~lre~~r~~L~-~~L~~~~---g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~ 83 (820)
|.+-..+||++++++++ +++++++ .|||||+|+.+.++||++|++++|+++||++++.|+++|.| |++. +||||
T Consensus 11 ~~~~p~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~-~~~~-~aIyf 88 (606)
T 3c98_A 11 GSMAPIGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREP-LPSL-EAVYL 88 (606)
T ss_dssp -----CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCC-BTTS-CEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCC-CCCC-CEEEE
Confidence 44455689999999965 6998774 49999999999999999999999999999999999998877 4765 79999
Q ss_pred ECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCch
Q psy8893 84 TRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMEL 163 (820)
Q Consensus 84 i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~ 163 (820)
|+||.+||++|++|++++... .|+.|||+|+|.++..+++.|++++..+.+.++.|+++||+|+|+|+|||++|+
T Consensus 89 v~Pt~eni~~i~~dl~~~~~~-----~Y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~ 163 (606)
T 3c98_A 89 ITPSEKSVHSLISDFKDPPTA-----KYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSAD 163 (606)
T ss_dssp ECCCHHHHHHHHHTTTSGGGC-----CBSCEEEEESSCCCHHHHHHHHTSGGGGTEEEEEECCCCSEECSSSEEECCCTT
T ss_pred EcCCHHHHHHHHHHhcchhhc-----ccCeEEEEECCCCCHHHHHHHHhcCcccccCeEEEEecchhhcCCcEEEecCCc
Confidence 999999999999999976432 699999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCC----CCccHHHHHHHHHHHHHHHhCCCCeEEecCc--hhHHHHHHHHH----HhcCCCCCCCCccCCCCcce
Q psy8893 164 AYREYHLE----KDPTCLYEVAQAIITLQNLYGIIPRVSGKGP--CVQQVWDLTKR----LSLEPKNKNVNQCKTSQISQ 233 (820)
Q Consensus 164 ~f~~l~~~----~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~--~a~~va~~l~~----~~~e~~~~~~~~~~~~~~~~ 233 (820)
+|..+|.+ .+.+.++++|++|+++|.++|.+|.|||+|+ .|+.+|+++.+ +.++....+. .....++.
T Consensus 164 ~~~~l~~~~~~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~~~~~--~~~~~~~~ 241 (606)
T 3c98_A 164 SFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGE--GPDKARSQ 241 (606)
T ss_dssp HHHHHHCGGGTTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCTTTTC--STTTTSCE
T ss_pred hHHHhcCCcccccchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCCcccC--CCCCCCce
Confidence 99999974 3567899999999999999999999999884 35555655543 3333322211 34567899
Q ss_pred EEEEecCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhH
Q psy8893 234 LILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTG 313 (820)
Q Consensus 234 LIIlDRs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~ 313 (820)
|||+||++|++|||+||||||||+||+|||++|.|+++.... + ..+++++.|+++|++|.++||+||++
T Consensus 242 LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~----~-------~~~~k~~~l~~~D~~~~~~r~~~f~~ 310 (606)
T 3c98_A 242 LLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI----G-------EARVKEVLLDEDDDLWIALRHKHIAE 310 (606)
T ss_dssp EEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESS----S-------SEEEEEEECSTTCHHHHHHTTSBHHH
T ss_pred EEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCCC----C-------CccceEeecCCCchhHHHHhccCHHH
Confidence 999999999999999999999999999999999999965321 1 12267889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCC
Q psy8893 314 VGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVD 393 (820)
Q Consensus 314 v~~~L~~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d 393 (820)
|++.|++++++++++++..+.+..++++|++||++||+++++++.++.|++||++|++.++. .|.+++++||++++|.+
T Consensus 311 v~~~l~~~~~~~~~~~~~~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~~~d 389 (606)
T 3c98_A 311 VSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTD 389 (606)
T ss_dssp HHHHHHHHHHHHHHHTTC-------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 99999999999998877522345688999999999999999999999999999999999974 89999999999999876
Q ss_pred ccc-----chHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc--cHHHHHHHHHhcCCccccC
Q psy8893 394 TDK-----ALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--QHILTLSNLEQAGLLKNSQ 465 (820)
Q Consensus 394 ~~~-----~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--~~~~~l~nL~~lGll~~~~ 465 (820)
.++ ....+.+++. ...+..|+|||+|||+++++|+++++++.+ ++..|+ ++...+.||+++|+...+.
T Consensus 390 ~~~~~~~~~~~~i~~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~----~~~~~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 390 AEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKL----IQHAQIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp TTSCBCSCTHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHH----HHHHTCCHHHHHHHHHGGGGTCCCBCC
T ss_pred cchhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHH----HHHcCCCHHHHHHHHHHHHhCCccccc
Confidence 542 4566777765 478999999999999999999999998744 444454 6788999999999876654
Q ss_pred CCCCCcchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCcccccc-cccccc--
Q psy8893 466 NSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQ-TTTSSR-- 542 (820)
Q Consensus 466 ~~~~~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~~~~~~-~~~~~~-- 542 (820)
+...+ ... . .....+.+.+|+||||+|+++|++|.++++.+.. ..++.+.++...... ...+..
T Consensus 466 ~~~~~-~~~------~----~~~~~~~~~~~~~s~~~Pll~~lle~l~k~~L~~--~~~p~~~~~~~~~~~~~~~~~~~~ 532 (606)
T 3c98_A 466 STLRR-RSK------P----ERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDT--KHYPYISTRSSASFSTTAVSARYG 532 (606)
T ss_dssp CTTTC-CCC------C----CCCCCCCCCCCTTCCCCCHHHHHHHHHHTTCSCT--TTSCCSSCC---------------
T ss_pred ccccc-ccc------h----hhccCCcccccceecchHHHHHHHHHHHhCCCCc--ccCcccCCCCcccccccccccccC
Confidence 21111 000 0 0012346788999999999999999999875432 122333221100000 000000
Q ss_pred ---ccc---ccccccccccccceEEEEEEEEEeccchhhHHHHhhCC-CCC---CChHHHHHHHHHHHH
Q psy8893 543 ---RNR---NTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDP-NIL---STVKDQKAFEKNLFN 601 (820)
Q Consensus 543 ---~~~---~~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~-~~~---~~~~~q~~~e~~i~~ 601 (820)
+++ ...++++++ ||+|||+||.|.++.+.+++..+. +++ ++.-.=.+|.+++-.
T Consensus 533 ~~~~~~~~~~~~~~~~iI-----VFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln~~~fl~~L~~ 596 (606)
T 3c98_A 533 HWHKNKAPGEYRSGPRLI-----IFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKK 596 (606)
T ss_dssp -----------CCCSEEE-----EEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTT
T ss_pred CccccCCCCCCCCCCEEE-----EEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeCHHHHHHHHHH
Confidence 001 111123344 999999999999999999987654 322 222233456665433
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.5e-77 Score=711.52 Aligned_cols=552 Identities=14% Similarity=0.181 Sum_probs=409.1
Q ss_pred HHHHHHHHHHHHHHhhc---------------------CCCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCC
Q psy8893 13 SLVQDFARTQFLELLEK---------------------CSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSL 71 (820)
Q Consensus 13 ~~lre~~r~~L~~~L~~---------------------~~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~ 71 (820)
.+||+.+++.|..||.. .++||+||+|+.+.++||++|++++|+++||++++.|++.|.
T Consensus 17 ~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r~ 96 (671)
T 1mqs_A 17 ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRS 96 (671)
T ss_dssp CCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCCC
T ss_pred ccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCCC
Confidence 57999999999999952 357999999999999999999999999999999999999887
Q ss_pred CCCCCCCeEEEEECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHh----cCccCCcceEEEEee
Q psy8893 72 PPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQE----NGVLGNFNIIEAFTC 147 (820)
Q Consensus 72 p~~~~~~~aIY~i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~----~~v~~~i~~i~e~~l 147 (820)
|. ++ .+|||||+|+.++|++|++|++++ .|+.|||+|+|.++...++.|++ +|+.+.|.++.|+++
T Consensus 97 ~~-~~-~~aIYfv~Pt~~ni~~i~~d~~~~--------~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~l 166 (671)
T 1mqs_A 97 PL-PD-VPAIYFVSPTKENIDIIVNDLKSD--------KYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYL 166 (671)
T ss_dssp CE-EE-EEEEEEECSCHHHHHHHHHHHHHT--------CEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCC
T ss_pred CC-CC-ceEEEEeCCCHHHHHHHHHHhhhc--------ccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEcc
Confidence 64 55 479999999999999999999865 59999999999999999999987 689999889999999
Q ss_pred eeeeecCCeeEecCchhhhhhcCCC--Cc---cHHHHHHHHHHHHHHHhCCCCeEE-ecCchhHHHHHHHHHHhcCC---
Q psy8893 148 NLFPFDNDLVSMEMELAYREYHLEK--DP---TCLYEVAQAIITLQNLYGIIPRVS-GKGPCVQQVWDLTKRLSLEP--- 218 (820)
Q Consensus 148 dfipld~dlfsLe~p~~f~~l~~~~--d~---s~l~~iA~~L~sL~~~~G~~P~I~-~~G~~a~~va~~l~~~~~e~--- 218 (820)
||+|+|+|+|||++|++|..+|.++ +. +.++.+|++|+++|.++|.+|.|| ++|+.|++||++|.++.++.
T Consensus 167 dfiple~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~ 246 (671)
T 1mqs_A 167 DFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVIN 246 (671)
T ss_dssp CSEECSTTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeccCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999876 43 679999999999999999999996 68999999999998754432
Q ss_pred --CCCCCCc--cCCCCcceEEEEecCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEE
Q psy8893 219 --KNKNVNQ--CKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSI 294 (820)
Q Consensus 219 --~~~~~~~--~~~~~~~~LIIlDRs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 294 (820)
....... .....++.|||+||++|++|||+||||||||+||+|||++|+|+++.....+ ++........+++++
T Consensus 247 ~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~--~~~~~~~~~~~~k~~ 324 (671)
T 1mqs_A 247 TNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKEN--GTDNTTAKPLATKKY 324 (671)
T ss_dssp TCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC-----------------CCEEE
T ss_pred ccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCc--cccccccccccceEE
Confidence 1110000 1235678999999999999999999999999999999999999998643211 000000011236889
Q ss_pred EeCCCChHHHHhhcCCHhHHHHHHHHHHHHHHHHHhhhcc-------------ccCCHHHHHHHHHHchhHHHHhhHHHH
Q psy8893 295 ILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNY-------------HEKSVSEMKTLVQQLPHMINTKKLLAN 361 (820)
Q Consensus 295 ~L~~~D~i~~e~R~~h~~~v~~~L~~~~~~~~~~~~~~~~-------------~~~si~em~~~v~~Lp~~~~~~~~l~~ 361 (820)
.|+++|++|.++||+||++|++.|++++++|++++++.+. +..++++|++||++||+++++++.++.
T Consensus 325 ~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~ 404 (671)
T 1mqs_A 325 DIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDT 404 (671)
T ss_dssp CCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764211 135699999999999999999999999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccchHHHHHHHhC--CCChHHHHHHHHHHHHhcC-CCChhHHHHHHH
Q psy8893 362 HTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAH--KKPLMKVLKLICMQSFTSS-GLKPKVLEYYKR 438 (820)
Q Consensus 362 H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~~~~Ie~lI~~--~~~~~d~LRLl~Lysl~~~-Gl~~k~~~~~k~ 438 (820)
|++||++|++.++++.|.+++++||+++ | ....+.|+++|.. ..+..|+|||+|||+++++ |+++++++.+++
T Consensus 405 H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~---~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~ 480 (671)
T 1mqs_A 405 HMNIFAALLSQLESKSLDTFFEVEQDPG-S---TKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVEN 480 (671)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTSCCS-S---HHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHh-c---CchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999997 2 2236789999976 3599999999999999999 999999999999
Q ss_pred HHHHHhCccHHHHHHHHHhcCCccccCCCCCCcchHhHHhhcccccc-cCC-----CC-CCCccccccccchhHHHHHHH
Q psy8893 439 EIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVED-SSE-----LA-PADINFVHSIYAPLSIRLVQR 511 (820)
Q Consensus 439 ~l~~~~G~~~~~~l~nL~~lGll~~~~~~~~~~~~~i~k~l~l~~~~-~~~-----~~-~~d~~y~~sgY~Pl~~rlve~ 511 (820)
.+ +.||++ +..+.+++++|-+. +...++..+ .++ .. |+|. |.|++.|+++.
T Consensus 481 ~l-~~~G~~-~~~~~~l~~~~~l~--------------~~~~l~~~~~~~~~~~~~~~~~~dl------~~~~~~r~~~~ 538 (671)
T 1mqs_A 481 YF-KENDYD-INALKYVYKLREFM--------------QLSNMSLQNKSLEDGSDSAFKPSNL------TLSGIYGLTEG 538 (671)
T ss_dssp HH-HTTTCC-CTHHHHHHHHHHHH--------------HHHHHHSCCCCC------------------------CHHHHH
T ss_pred HH-HHcCCC-HHHHHHHHHHHHHh--------------ccccccccccccccccccccccccc------ccccHHHHHHH
Confidence 98 889996 44555555554221 111122110 000 00 2222 66777777777
Q ss_pred HhcCCCCC-hhhhhhccCCCcc------------------------ccccccccc-ccccccccccccccccceEEEEEE
Q psy8893 512 LTREPSII-PQDLLALLPGAVL------------------------EETQTTTSS-RRNRNTQENKMLTFQEASLYTIKG 565 (820)
Q Consensus 512 l~~~~~~~-~~~~l~~l~g~~~------------------------~~~~~~~~~-~~~~~~~~~k~i~~~~~~v~~Igg 565 (820)
+.++||.. ++.+.+.+|++.. +.+++..+. ..++.+..+.+--++.++||+|||
T Consensus 539 ~~~~g~~~~~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG 618 (671)
T 1mqs_A 539 KLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGG 618 (671)
T ss_dssp TTTSSCSSSHHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETC
T ss_pred HhccchhhHHHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECC
Confidence 77767755 3444455555431 111211111 011000000111123445999999
Q ss_pred EEEeccchhhHHHHhh---CCCCC---CChHHHHHHHHHHHHH
Q psy8893 566 IAILDNDGHRLLAKYY---DPNIL---STVKDQKAFEKNLFNK 602 (820)
Q Consensus 566 i~~~e~~g~r~l~k~y---~~~~~---~~~~~q~~~e~~i~~~ 602 (820)
+||.|+++.+.+++.. +..++ ++.-.-.+|.+++-..
T Consensus 619 ~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l 661 (671)
T 1mqs_A 619 GNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRL 661 (671)
T ss_dssp BCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHh
Confidence 9999999999999873 22221 2222344666665443
No 7
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=1.3e-33 Score=273.20 Aligned_cols=146 Identities=66% Similarity=1.063 Sum_probs=134.0
Q ss_pred cceEEEEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCCCcEEEecCeEEEEEEeccEEEEEEecCCc
Q psy8893 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHE 636 (820)
Q Consensus 557 ~~~v~~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~e 636 (820)
+.+++||.++++++.+|+++++|||.+.+ ++.++|+++|+++|++++|.+++++.++++++|||+|++|||+++++.+|
T Consensus 7 ~~sl~mI~~ililn~~Gk~~lsK~Y~~~~-~~~~~~~~~e~~i~~~~~r~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~e 85 (153)
T 3tjz_C 7 EPSLYTVKAILILDNDGDRLFAKYYDDTY-PSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYE 85 (153)
T ss_dssp CCCSBCEEEEEEECTTSCEEEEEECSSSS-CSHHHHHHHHHHHHHHHSSCCCCEEEETTEEEEEEECSSCEEEEEEETTS
T ss_pred cccHHHheEEEEECCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCCCEEEECCEEEEEEEECCEEEEEEEcCCC
Confidence 35689999999999999999999998753 47889999999999999888899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcccCC
Q psy8893 637 NELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDD 703 (820)
Q Consensus 637 NEl~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~~~ 703 (820)
||++++++||.|||+|+.+|+|+|||+++++||++||.+||||+|+|+++|||++.|++|+.+++++
T Consensus 86 Nel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~~ 152 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED 152 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC------
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccCC
Confidence 9999999999999999999977999999999999999999999999999999999999999988754
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.94 E-value=6.2e-27 Score=228.57 Aligned_cols=136 Identities=19% Similarity=0.351 Sum_probs=129.0
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC---CCcEEEecCeEEEEEEeccEEEEEEecCCccH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA---NAEIIMLEGLTCVYKSNVDLFFYVMGSSHENE 638 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~---~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNE 638 (820)
||.++++.+.+|+++++|||.+. +.++|+++++.+|+++.++ .++++.++++++|||+|++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT---SDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC---CHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCC---CHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 58999999999999999999874 6788999999999999754 38999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 639 LILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 639 l~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
++++++||.|+++|+.+| |+|||+++++||++||.+||||+|+|+++||+++.|.+++.+.+
T Consensus 78 l~~le~L~~~vevl~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~ 139 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQAD 139 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-ccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcch
Confidence 999999999999999999 69999999999999999999999999999999999999998766
No 9
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.94 E-value=2.6e-26 Score=220.52 Aligned_cols=136 Identities=17% Similarity=0.324 Sum_probs=127.8
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcC---CCcEEEecCeEEEEEEeccEEEEEEecCCccH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRA---NAEIIMLEGLTCVYKSNVDLFFYVMGSSHENE 638 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~---~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNE 638 (820)
||.++.+.+.+|+++++|||.+ .+.+.++++++.+++++..+ .++++.++++++|||+|++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~---~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQ---FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSC---CCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCC---CChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 5899999999999999999987 26788999999999998643 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 639 LILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 639 l~l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
++++++||.|+++|+.+| |+|||+++++||++||.+||||+|+|+++||++..|++++..++
T Consensus 78 l~~le~L~~~ve~l~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 999999999999999999 69999999999999999999999999999999999999997654
No 10
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.88 E-value=5.5e-23 Score=198.45 Aligned_cols=125 Identities=12% Similarity=0.175 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhhc----------CCCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEE
Q psy8893 14 LVQDFARTQFLELLEK----------CSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFI 83 (820)
Q Consensus 14 ~lre~~r~~L~~~L~~----------~~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~ 83 (820)
+||+.+|++|.+||+. .++||+||+|+.++++||+++++++|+++||++++.|+++|.|. ++. +||||
T Consensus 21 sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~-~~~-~aIYf 98 (159)
T 1y9j_A 21 SIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPI-RDV-PAVYF 98 (159)
T ss_dssp HHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCB-TTS-CCEEE
T ss_pred HHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCC-CCC-CEEEE
Confidence 8999999999999986 46899999999999999999999999999999999999988774 665 79999
Q ss_pred ECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHh----cCccCCcceEEEEeee
Q psy8893 84 TRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQE----NGVLGNFNIIEAFTCN 148 (820)
Q Consensus 84 i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~----~~v~~~i~~i~e~~ld 148 (820)
++||.+|+++|++||+++ .|++|||+|+|.+++..++.|++ ++..+.|..+.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~~--------~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRNQ--------LYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHHT--------CBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhhc--------ccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 999999999999999875 59999999999999999999998 6777777766665543
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.81 E-value=2.3e-20 Score=211.57 Aligned_cols=137 Identities=17% Similarity=0.315 Sum_probs=118.1
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhcCCCcEEEecCeEEEEEEeccEEEEEEecCCccHHHH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELIL 641 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNEl~l 641 (820)
||.++++++.+|+++++|||.+.+ +......|++.+..+.....++++.++++++||++|++|||+++++.++|||++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~--~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDI--GRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSC--CHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCC--ChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 578999999999999999998752 333334444443332222458999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhccc
Q psy8893 642 MSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRV 701 (820)
Q Consensus 642 ~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~ 701 (820)
+++||.|+++|+.+| |+|||++|++||++||.+||||+|+|+++||+++.|.+.+.+..
T Consensus 79 le~L~~~v~vl~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 137 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYF-GKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQG 137 (435)
T ss_dssp HHHHHHHHHHHHHHH-SSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHH-hccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccc
Confidence 999999999999999 59999999999999999999999999999999998877777665
No 12
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.80 E-value=2.7e-20 Score=210.33 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=126.0
Q ss_pred EEEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhh-cCCCcEEEecCeEEEEEEeccEEEEEEecCCccHHH
Q psy8893 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTH-RANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELI 640 (820)
Q Consensus 562 ~Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~-~~~~~~~~~~~~~ivyr~~~~l~~~~~~~~~eNEl~ 640 (820)
||.++++++.+|+++++|||.+.+- ......|++.+..+.. ...++++.++++++||++|++|||+++++.++|||+
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~--~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVD--MSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCT--TTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCC--hHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 6889999999999999999987532 2335678888777655 457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHhCHHHHHHHHHHHHcCcEEEecCHHHHHHHHhcccCC
Q psy8893 641 LMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDD 703 (820)
Q Consensus 641 l~~~i~~~~e~L~~~~~~~v~e~~l~~~~d~v~l~lDE~v~~G~i~Et~~~~I~~rv~~~~~~ 703 (820)
++++||.|+++|+.+| |+|||++|++||++||.+||||+|+|+++||+++.|.+++.+....
T Consensus 80 ~le~L~~~v~~l~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~ 141 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYF-KELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHK 141 (423)
T ss_dssp HHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCC
T ss_pred HHHHHHHHHHHHHHHH-hhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcc
Confidence 9999999999999999 6999999999999999999999999999999999999999887643
No 13
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=97.05 E-value=6.8e-05 Score=72.03 Aligned_cols=34 Identities=41% Similarity=0.584 Sum_probs=26.4
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhcccCCCC
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDI 796 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~~~~~ 796 (820)
++.+.+||++||| +|+|||++.|++||++|++|+
T Consensus 120 ~vy~lLDE~id~G------------~~~eT~~~~I~~~v~~~~~~~ 153 (153)
T 3tjz_C 120 GLFLAVDEIVDGG------------VILESDPQQVVHRVALRGEDV 153 (153)
T ss_dssp HHHHHHHHHEETT------------EECCCCHHHHHHTC-------
T ss_pred HHHHHHHHHHcCC------------EeeeCCHHHHHHHHhcccCCC
Confidence 8889999999999 999999999999999998874
No 14
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.24 E-value=0.025 Score=54.32 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=28.1
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhccc
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALR 792 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~ 792 (820)
.+...+||++|+| +++|||+++|.++|...
T Consensus 109 ~vy~lLDE~id~G------------~~~eT~~~~l~~~I~~~ 138 (158)
T 1w63_Q 109 KAYFILDEFLMGG------------DVQDTSKKSVLKAIEQA 138 (158)
T ss_dssp HHHHHHHTTEETT------------EESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------------EEEecCHHHHHHHHhcc
Confidence 7888999999999 99999999999999964
No 15
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=90.96 E-value=0.033 Score=52.49 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=26.4
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhc
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVA 790 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~ 790 (820)
.+.+.+||++||| +++|||++.|++|+.
T Consensus 109 ~vy~lLDE~id~G------------~~~et~~~~il~~~~ 136 (142)
T 2vgl_S 109 KVYTVVDEMFLAG------------EIRETSQTKVLKQLL 136 (142)
T ss_dssp HHHHHHHHHEETT------------EECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------------EEEEcCHHHHHHHHH
Confidence 7888999999999 999999999999986
No 16
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=77.69 E-value=0.37 Score=53.95 Aligned_cols=32 Identities=9% Similarity=-0.075 Sum_probs=29.3
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhcccCC
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVD 794 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~~~ 794 (820)
++.+.+||+||+| +++|||+++|.+++..++-
T Consensus 107 ~vy~lLDE~id~G------------~~~~t~~~~l~~~i~~~~~ 138 (435)
T 2vgl_M 107 LIYELLDEILDFG------------YPQNSETGALKTFITQQGI 138 (435)
T ss_dssp HHHHHHHHHEETT------------EECCCCHHHHGGGCCCCCC
T ss_pred HHHHHHHHHhcCC------------EEEecCHHHHHHHhccccc
Confidence 7788899999999 9999999999999998764
No 17
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=72.70 E-value=0.25 Score=55.13 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=29.9
Q ss_pred eeeeeecccccCCCCcccCCCCceeEEEccChhHHHHHhcccCCC
Q psy8893 751 IMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDD 795 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~iile~d~~~i~~rv~~~~~~ 795 (820)
++.+.+||++|+| +++|||+++|.++|...+-.
T Consensus 109 ~vy~lLDE~id~G------------~~~~t~~~~l~~~i~~~~~~ 141 (423)
T 1w63_M 109 IIYELLDELMDFG------------YPQTTDSKILQEFITQEGHK 141 (423)
T ss_dssp HHHHHHHHHCSSS------------SCCCCCSTTTTTTCCSCCCC
T ss_pred HHHHHHHHHhcCC------------EEeecCHHHHHHhhcCCCcc
Confidence 7788899999999 99999999999999987644
No 18
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.92 E-value=39 Score=23.66 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHH
Q psy8893 336 EKSVSEMKTLVQQLPHMINTKKLLANHTNIAEL 368 (820)
Q Consensus 336 ~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~ 368 (820)
++++++++++++.|.+-..+.+.+.-|+..+..
T Consensus 2 sntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 2 SNTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 457889999999998888888888889876643
No 19
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=27.06 E-value=1.7e+02 Score=26.94 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=57.9
Q ss_pred EEEEEEeccchhhHHHHhhCCCCCCChHHHHHHHHHHHHHhhc---------CCCcEEEecCeEEEEEEeccEEEEEEec
Q psy8893 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHR---------ANAEIIMLEGLTCVYKSNVDLFFYVMGS 633 (820)
Q Consensus 563 Iggi~~~e~~g~r~l~k~y~~~~~~~~~~q~~~e~~i~~~~~~---------~~~~~~~~~~~~ivyr~~~~l~~~~~~~ 633 (820)
+.+|++.+.+|-..+.-..+.. +...-+..|... |..+.. ...-|..|++|.+|--...-|++.++++
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~--~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias 114 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNA--PEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIAS 114 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTS--CGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEecCCCC--chhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEec
Confidence 4567777777777665554432 234455566665 544321 2244678899999888899999999999
Q ss_pred CCccHHHHHHHHHHHHHHHH
Q psy8893 634 SHENELILMSVLNCLYDAIS 653 (820)
Q Consensus 634 ~~eNEl~l~~~i~~~~e~L~ 653 (820)
.+-|==.++.+=+.+...|.
T Consensus 115 ~~aNtG~Il~Le~~L~p~l~ 134 (143)
T 3cpt_A 115 SSANTGLIVSLEKELAPLFE 134 (143)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHhhhHHHHHHHHH
Confidence 99997777665444444433
Done!