RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8893
(820 letters)
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
BUN endocytosis-exocytosis complex; 2.40A {Loligo
pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Length = 591
Score = 229 bits (585), Expect = 5e-66
Identities = 75/573 (13%), Positives = 195/573 (34%), Gaps = 47/573 (8%)
Query: 12 ISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSL 71
+ V + + ++K + K +I D V + + + +
Sbjct: 4 KTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRR-R 62
Query: 72 PPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQ 131
P+ + V I P + + + + + + + H+FF + L
Sbjct: 63 EPLPLLEAVYLI-TPTEESVKCLMADFQNPDNPQYRG-----AHIFFTEACPEELFKELC 116
Query: 132 ENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHL----EKDPTCLYEVAQAIITL 187
++ ++ P+++ + S++ ++ Y+ + A+ I TL
Sbjct: 117 KSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATL 176
Query: 188 QNLYGIIPRVSGKGP---CVQQVWDLTKRL-SLEPKNKNVNQCKTSQISQLILIDRNVDV 243
G P V + + ++L + + + + SQL+++DR D
Sbjct: 177 CATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDP 236
Query: 244 LTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELF 303
++PL +LT++ + ++ I N K+ ++ +K ++L+ D+L+
Sbjct: 237 ISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVP-----------EKEVLLDEKDDLW 285
Query: 304 AALRDKIFTGVGPYLSKRAKFISAQFDT-QNYHEKSVSEMKTLVQQLPHMINTKKLLANH 362
+R + V ++K+ K + + + + ++ +++++P + H
Sbjct: 286 VEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTH 345
Query: 363 TNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMKVLK 416
++AE EQ++ +G D D + + K ++
Sbjct: 346 LHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIR 404
Query: 417 LICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLR 476
+I + G+ + L + + +++++ G+ Q R
Sbjct: 405 IILLYIIHKGGISEENLAKLVQH--AHIPAEEKWIINDMQNLGVPI-------IQDGGRR 455
Query: 477 KMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQ 536
K+ + + + AD + S + P +++ E + + L G Q
Sbjct: 456 KIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAA-VEDKLDTRHYPFLNGGGPRPSCQ 514
Query: 537 TTTSSRRNRNTQENKMLT---FQEASLYTIKGI 566
S R ++ + ++ + GI
Sbjct: 515 QPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGI 547
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1
PDB: 3puj_A 3c98_A
Length = 594
Score = 225 bits (574), Expect = 2e-64
Identities = 74/575 (12%), Positives = 196/575 (34%), Gaps = 56/575 (9%)
Query: 12 ISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSL 71
++V + ++ ++K K ++ D + + + + +
Sbjct: 7 KAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRRE 66
Query: 72 PPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQ 131
P +++ P K + + + K K H+FF L
Sbjct: 67 PL--PSLEAVYLITPSEKSVHSLISDFKDPPTAKYRA-----AHVFFTDSCPDALFNELV 119
Query: 132 ENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHL----EKDPTCLYEVAQAIITL 187
++ + P+++ + S++ +++ ++ + L +A+ I TL
Sbjct: 120 KSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATL 179
Query: 188 QNLYGIIPRVSGKGP------CVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNV 241
P V +G Q + D + + + + SQL+++DR
Sbjct: 180 CATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKAD--DPTMGEGPDKARSQLLILDRGF 237
Query: 242 DVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDE 301
D +P+ +LT++ + ++ I N K+ + ++ K ++L+ D+
Sbjct: 238 DPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEAR-----------VKEVLLDEDDD 286
Query: 302 LFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLAN 361
L+ ALR K V +++ K S+ + ++ ++ +++++P +
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 346
Query: 362 HTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMKVL 415
H ++AE EQ++ +G D + + + +
Sbjct: 347 HLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKI 405
Query: 416 KLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLL 475
++I + F +G+ + L + + ++N+ G+ + ++ R+
Sbjct: 406 RIILLYIFLKNGITEENLNKLIQH--AQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPE 463
Query: 476 RKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEET 535
RK ++ + S + P+ +++ + + +
Sbjct: 464 RK-----------ERISEQTYQLSRWTPIIKDIMEDTIEDK--LDTKHYPYISTRSSASF 510
Query: 536 QTTTSSRRNRNTQENK----MLTFQEASLYTIKGI 566
TT S R + +NK + ++ + G+
Sbjct: 511 STTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGV 545
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT
choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 650
Score = 207 bits (527), Expect = 2e-57
Identities = 66/520 (12%), Positives = 160/520 (30%), Gaps = 54/520 (10%)
Query: 15 VQDFARTQFLELLEKCSGK---KAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSL 71
++ +T L + K ++ D + A + + + V +
Sbjct: 4 LKSAVKTVLTNSLRSVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRK 63
Query: 72 PPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQ 131
+ ++ P +++D + + + + HLFF+ +L
Sbjct: 64 VL--PQFHGVYFIEPTEENLDYVIRDFADRTPTYEA------AHLFFLSPVPDALMAKLA 115
Query: 132 ENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYRE-YHLEKDPTCLYEVAQAIITLQNL 190
+ ++ P ++ + ++ + Y + + + + TL
Sbjct: 116 SAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNIDHLVRRLSTLCTT 175
Query: 191 YGIIPRVSGKGPCVQQVWD----LTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTP 246
+ P V L K + + +N + SQ +++DR VD+ +P
Sbjct: 176 MNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSP 235
Query: 247 LATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAAL 306
L +LTY+ ++ I N + E+ ++ ++L D+++ +
Sbjct: 236 LVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQ----------QRQVVLGEDDDIWLQM 285
Query: 307 RDKIFTGVGPYLSKRAKFISAQFDT------QNYHEKSVSEMKTLVQQLPHMINTKKLLA 360
R + V + E +K +++ LP + +
Sbjct: 286 RHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYS 345
Query: 361 NHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDK-----ALPYIENAIAHKK-PLMKV 414
H +++ I + AEQ I + D + + + + ++
Sbjct: 346 LHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDK 404
Query: 415 LKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTL 474
L+ + + +G L + NLE G + G + T+
Sbjct: 405 LRCLMLCVLAKNGTSSHELNNLLDNA--NIATPSRSAIYNLEMLGATVVADRRGRKPKTM 462
Query: 475 LRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTR 514
R D+ +V S + P+ L++ +
Sbjct: 463 KRI-------------ERDMPYVLSRWTPIVKDLMEYIAT 489
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare
proteins, binding protein, endocytosis-exocytosis
complex; 3.05A {Mus musculus} PDB: 2pjx_A
Length = 592
Score = 205 bits (523), Expect = 3e-57
Identities = 85/571 (14%), Positives = 185/571 (32%), Gaps = 59/571 (10%)
Query: 13 SLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLP 72
S+V +T + K K ++ D+ + + L E + ++
Sbjct: 12 SVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNR-E 70
Query: 73 PMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQE 132
P+ + + FI P K +D + K ++K +++F +++
Sbjct: 71 PVRQMKALYFI-SPTPKSVDCFLRDFGSKSEKKYKA-----AYIYFTDFCPDSLFNKIKA 124
Query: 133 NGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH------LEKDPTCLYEVAQAIIT 186
+ E + P ++ + ++++ A+ + + + +A+ I+T
Sbjct: 125 SCSKSIRRCKE-INISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVT 183
Query: 187 LQNLYGIIPRVSGKGPCVQQVWD----LTKRLSLEPKNKNVNQCKTSQISQLILIDRNVD 242
+ P V K + + K+L K K SQL++IDR D
Sbjct: 184 VCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFD 243
Query: 243 VLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDEL 302
++ + +LT++ + ++ I N T K+ +K +L D+L
Sbjct: 244 PVSTVLHELTFQAMAYDLLPIENDTYKYK---------------TDGKEKEAVLEEDDDL 288
Query: 303 FAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANH 362
+ +R + V + K K IS+ + S+S + L++++PH H
Sbjct: 289 WVRVRHRHIAVVLEEIPKLMKEISSTKK-ATEGKTSLSALTQLMKKMPHFRKQISKQVVH 347
Query: 363 TNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMKVLK 416
N+AE + EQ++ LG D + + + ++
Sbjct: 348 LNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIR 406
Query: 417 LICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLR 476
+ + F +G + L+ + I S+L + + Q R
Sbjct: 407 AVLLYIFGINGTTEENLDRLIHNVKIEDDSDMIRNWSHLGVPIVPPSQQAKPLR------ 460
Query: 477 KMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTR-EPSIIPQDLLALLPGAVLEET 535
+ A+ F S + P +++ + P
Sbjct: 461 -----------KDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSG 509
Query: 536 QTTTSSRRNRNTQENKMLTFQEASLYTIKGI 566
+ + N E ++ I GI
Sbjct: 510 AVSARQKPRTNYLELDRKNGSRLIIFVIGGI 540
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: e.25.1.1
Length = 671
Score = 187 bits (476), Expect = 2e-50
Identities = 78/574 (13%), Positives = 182/574 (31%), Gaps = 54/574 (9%)
Query: 34 KAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDI 93
K +I D + V V L + + + +K P + I+ P +++DI
Sbjct: 59 KVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPD--VPAIYFVSPTKENIDI 116
Query: 94 IADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQEN----GVLGNFNIIEAFTCNL 149
I +++K + + +++ F + L + G + +
Sbjct: 117 IVNDLKSDKYSE--------FYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDF 168
Query: 150 FPFDNDLVSMEMELAYREYH-----LEKDPTCLYEVAQAIITLQNLYGIIPRVS-GKGPC 203
+ +L S+E+ AY + E+ +A + IP + KG
Sbjct: 169 IVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGP 228
Query: 204 VQQVWD-LTKRLSLEPKNKNVNQC------KTSQISQLILIDRNVDVLTPLATQLTYEGL 256
+ + + L +L N N + + + LI++DRN+D + + Y+ +
Sbjct: 229 AEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCM 288
Query: 257 IDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGP 316
+ +IF + T P +++ + K + D + F
Sbjct: 289 VFDIFKLSRNTVTIPLESKENGTDNTTAKP--LATKKYDIEPNDFFWMENSHLPFPEAAE 346
Query: 317 YLSKRAKFISAQF-------------DTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHT 363
+ + D +++ +V++LP + K + H
Sbjct: 347 NVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHM 406
Query: 364 NIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSF 423
NI + ++ EQ+ + L +++ + K+ I +
Sbjct: 407 NIFAALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTN-NLEDKLRSFIVLYLT 465
Query: 424 TSSGLKPKVLEYYKRE----IIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMM 479
+++GL ++ + +++ L Q + S K
Sbjct: 466 STTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPS 525
Query: 480 RLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTT 539
LT+ L + +L+ P D + + + +TT
Sbjct: 526 NLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTD 585
Query: 540 SSR-------RNRNTQENKMLTFQEASLYTIKGI 566
S R +T++ K ++ ++ ++ + G
Sbjct: 586 SYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGG 619
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 163 bits (415), Expect = 4e-47
Identities = 97/148 (65%), Positives = 125/148 (84%), Gaps = 1/148 (0%)
Query: 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGL 616
E SLYT+K I ILDNDG RL AKYYD +VK+QKAFEKN+FNKTHR ++EI +LEGL
Sbjct: 7 EPSLYTVKAILILDNDGDRLFAKYYDD-TYPSVKEQKAFEKNIFNKTHRTDSEIALLEGL 65
Query: 617 TCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLAL 676
T VYKS++DL+FYV+GSS+ENEL+LM+VLNCL+D++SQ+LRKNVEKR +L+N++ + LA+
Sbjct: 66 TVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAV 125
Query: 677 DEICDGGIIQEADSSAVVQRVALRVDDI 704
DEI DGG+I E+D VV RVALR +D+
Sbjct: 126 DEIVDGGVILESDPQQVVHRVALRGEDV 153
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 101 bits (253), Expect = 2e-25
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAE---IIMLEGLTCV 619
I+ I I + G LAK+Y +++ + + +A+ + +
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQF---DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKII 58
Query: 620 YKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEI 679
Y+ L+F + ++N L + ++ + +++ NV + +++ N V +DE+
Sbjct: 59 YRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEM 117
Query: 680 CDGGIIQEADSSAVVQRV 697
G I+E + V++++
Sbjct: 118 FLAGEIRETSQTKVLKQL 135
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 96.7 bits (240), Expect = 2e-23
Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAE---IIMLEGLTCV 619
++ + + G L K+Y + K++K + L + + L V
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLAT---SDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVV 58
Query: 620 YKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEI 679
YK L+F +NELI + +++ + + + +V + +++ N + LDE
Sbjct: 59 YKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDEF 117
Query: 680 CDGGIIQEADSSAVVQRVA 698
GG +Q+ +V++ +
Sbjct: 118 LMGGDVQDTSKKSVLKAIE 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 2e-12
Identities = 59/455 (12%), Positives = 143/455 (31%), Gaps = 94/455 (20%)
Query: 407 HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQA-----GLL 461
K ++ V +F + K ++ + I+ HI+ + L
Sbjct: 17 QYKDILSVF----EDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 462 KNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQ 521
+ Q +++ VE+ L + F + +P+ R+PS++ +
Sbjct: 72 LSKQEEMVQKF----------VEEV--LRI-NYKF---LMSPIKTE-----QRQPSMMTR 110
Query: 522 DLLALLPGAVLEETQTTTSSRRNRN-TQENKMLTFQEA--SLYTIKGIAI--LDNDGHRL 576
+ + N ++ L ++A L K + I + G
Sbjct: 111 MYIE-----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 577 LAKYYDPNILSTVKDQKAFEKNLF----NKTHRANAEIIMLEGLTCVYKSNVDLFFYVMG 632
+A ++ + K Q + +F + + ML+ L N +
Sbjct: 166 VAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-----WTSR 216
Query: 633 SSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSA 692
S H + + L ++ + + ++L+ + +L L + + + S
Sbjct: 217 SDHSSNIKL--RIHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAFNLSC 266
Query: 693 ---VVQRVALRVDDIPLGEQTVAQV--FQSGYLQTRSLSISSNLLAIS-----------S 736
+ R D + T + S+ L +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 737 ARSCSLLSSLCFNGIMILS--SHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVD 794
R S+++ +G+ H CD +L + + ++ +++ A+ + R+++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCD-KLTT--IIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 795 D--IPL-------GEQTVAQVFQSAKEQLKWSLLK 820
IP + + V + K+SL++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 69.1 bits (168), Expect = 4e-12
Identities = 89/657 (13%), Positives = 214/657 (32%), Gaps = 160/657 (24%)
Query: 216 LEPKNKNVNQCK-TSQISQLILIDRNVD--VLTPLATQLTYEGLIDEIFGIHNTTAKFPG 272
E + CK + + IL +D +++ A T L + +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQ--- 80
Query: 273 AKFSQSEEDSNFEKIVSD-KKSIILNSGD-ELFAALRDKIFTGVGPYLSKRAKFISAQFD 330
KF + N++ ++S K S ++ RD+++ + +K +S
Sbjct: 81 -KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKY--NVS---- 132
Query: 331 TQNYHEKSVSEMKTLVQQL-PH-------MINT-KKLLANHTNIAELIKD--VTDTAEFL 379
+ +++ + +L P ++ + K +A ++ V +F
Sbjct: 133 ----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDF- 182
Query: 380 DALHAEQEIF---LG-VDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEY 435
+IF L ++ + + + + ++ + S L+ ++
Sbjct: 183 -------KIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIK-LRIHSIQA 232
Query: 436 YKREIIQTYGFQH-ILTLSNLEQAGLLK----------NSQNSGTRQYTLLRKMMRLTVE 484
R ++++ +++ +L L N++ A ++ + ++++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 485 DSSE-LAPADINFVHSIYAP-LSIRLVQRLTRE-PSIIPQDLLALLPGAVLEETQTTTSS 541
S L P + V S+ L R Q L RE + P+ L+++ + + T
Sbjct: 293 HHSMTLTPDE---VKSLLLKYLDCR-PQDLPREVLTTNPR-RLSII-AESIRDGLAT--W 344
Query: 542 RRNRNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKN--- 598
++ +K+ T E+SL +L+ +R K +D LS F +
Sbjct: 345 DNWKHVNCDKLTTIIESSL------NVLEPAEYR---KMFDR--LSV------FPPSAHI 387
Query: 599 -------LFNKTHRANAEIIM--LEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLY 649
++ +++ +++ L + V K + + + L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------IYLELKVKL 439
Query: 650 DAISQILRKNVEKRNVLDNLDIVMLALDEICDGGI-------IQEADSSAVVQRVALRVD 702
+ + R V+ N+ D L + D ++ + +R+ L
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHP---ERMTL--- 492
Query: 703 DIPLGEQTVAQVFQSGYLQTRSLS---ISSNLLAISSARSCSLLSSLCFNGIMILSSHSG 759
F+ +L R L + +S + L L F I +
Sbjct: 493 ------------FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 760 CDGRLPSL----------CLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQV 806
+ + ++ + S ++++ +AL +D + E+ QV
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLR----------IALMAEDEAIFEEAHKQV 587
Score = 66.8 bits (162), Expect = 2e-11
Identities = 116/699 (16%), Positives = 200/699 (28%), Gaps = 235/699 (33%)
Query: 83 ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNII 142
+ + I+ +I D+I K+ S T R LF+ L + QE V F +
Sbjct: 41 MPKSILSKEEI--DHI-IMSKDAVSGTLR----LFW-----TLLSK--QEEMV-QKF-VE 84
Query: 143 EAFTCNLFPFDNDLVSMEM---ELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSG 199
E N + F + E + R Y ++D LY Q + R+
Sbjct: 85 EVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYN-----VSRL-- 134
Query: 200 KGPCVQQVWDLTKRL-SLEPKNKNVNQC------KTSQISQLILIDRNVDVLTPLATQLT 252
Q L + L L P KNV KT + L DV Q
Sbjct: 135 -----QPYLKLRQALLELRP-AKNVLIDGVLGSGKTW----VAL-----DVCLSYKVQCK 179
Query: 253 YEGLIDEIFGIHNTTAKFPGAKFSQSEE-----DSNFEKIVSDKKSIILNSGDELFAALR 307
+ +IF ++ P ++ D N+ +I L + A LR
Sbjct: 180 MDF---KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELR 235
Query: 308 DKIFTGVGPYLSKRA----------KFISAQFD--------TQN------------YHEK 337
+ + PY + K +A F+ T+ H
Sbjct: 236 RLLKSK--PY--ENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 338 SVSEMKTL----------------VQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDA 381
TL Q LP + T + IAE I+D T +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDN--- 346
Query: 382 LHAEQEIFLGVDTDKALPYIENAIAHKKP-LMKVLKLICMQSFT----SSGLKPKVLEYY 436
+ V+ DK IE+++ +P + + S+ + +L
Sbjct: 347 -------WKHVNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPPSAHIPTILLSLI 395
Query: 437 KREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINF 496
++I ++ L + L++ T + +++ +E+ L
Sbjct: 396 WFDVI-KSDVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------- 445
Query: 497 VHSIYAPLSIRLVQRLTREPSIIPQDLLALLP---------GAVLEETQTTTSSRRNRNT 547
H +V P D L G L+ +
Sbjct: 446 -HR-------SIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE----------- 485
Query: 548 QENKMLTFQEASLYTIKGIAILD---------NDGHRLLAKYYDPNILSTVKDQKAFEKN 598
+M F+ ++ LD +D A N L +K
Sbjct: 486 HPERMTLFRM--VF-------LDFRFLEQKIRHDSTAWNASGSILNTLQQLK-------- 528
Query: 599 LFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRK 658
YK Y+ + + E ++ ++L+ L ++
Sbjct: 529 --------------------FYKP------YICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 659 NVEKRNVLDNLDIVMLAL-DEICDGGIIQEADSSAVVQR 696
D++ +AL E D I +EA VQR
Sbjct: 563 --------KYTDLLRIALMAE--DEAIFEEAHKQ--VQR 589
Score = 47.5 bits (112), Expect = 2e-05
Identities = 53/314 (16%), Positives = 97/314 (30%), Gaps = 74/314 (23%)
Query: 5 LSGGKV-NISLVQD---FARTQFLELLEKCSGKKAIIWDD----ALAG-P--VGLVA--- 50
LS +ISL + LL K + D L P + ++A
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTTNPRRLSIIAESI 337
Query: 51 --------NVQLLNERDVKRNIHLKPGSLPPMENIAN----VIF-----ITRPIVK---- 89
N + +N + I L P E +F I ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 90 ------HMDIIADNIKRKEKEKRSDTRRIDYH-LFFVPRKSLLCEQRLQENGVLGNFNII 142
M ++ K EK+ I ++ + L E L ++ ++NI
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIP 456
Query: 143 EAFTCN-LFPFDND----------LVSMEME----------LAYR--EYHLEKDPTCLYE 179
+ F + L P D L ++E L +R E + D T
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 180 VAQAIITLQNL--YGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILI 237
+ TLQ L Y P + P +++ + L +N+ K + + ++ L+
Sbjct: 517 SGSILNTLQQLKFYK--PYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLLRIALM 573
Query: 238 DRNVDVLTPLATQL 251
+ + Q+
Sbjct: 574 AEDEAIFEEAHKQV 587
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 67.3 bits (163), Expect = 8e-12
Identities = 30/208 (14%), Positives = 72/208 (34%), Gaps = 11/208 (5%)
Query: 562 TIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYK 621
+ + +LD G L+ + Y ++ + + + + + I+ G+ ++
Sbjct: 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVE-HFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 622 SNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICD 681
+ +L+ + ++ S L + S+ K +E+ ++ DN I+ LDE+ D
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEY-FKELEEESIRDNFVIIYELLDELMD 119
Query: 682 GGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNL---------L 732
G Q DS + + + + G + +
Sbjct: 120 FGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAV 179
Query: 733 AISSARSCSLLSSLCFNGIMILSSHSGC 760
+ + + ++L S I + SG
Sbjct: 180 NLLVSANGNVLRSEIVGSIKMRVFLSGM 207
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 67.3 bits (163), Expect = 8e-12
Identities = 24/134 (17%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKS 622
I G+ I ++ G L+++ Y +I D AF N+ + + + + + + +
Sbjct: 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVD--AFRVNVIHARQQVRSPVTNIARTSFFHVK 59
Query: 623 NVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDG 682
+++ + + N ++ L + D ++ + + N+ +N ++ LDEI D
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAY-FGKISEENIKNNFVLIYELLDEILDF 118
Query: 683 GIIQEADSSAVVQR 696
G Q +++ A+
Sbjct: 119 GYPQNSETGALKTF 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 124/718 (17%), Positives = 206/718 (28%), Gaps = 270/718 (37%)
Query: 5 LSGGKVNIS-LV--QDFA-----RTQFLELLEKCSGKKAIIWDDALAGPVGLVAN----- 51
LS G + LV F + QF ++L + + A DD P LV
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA--DDEPTTPAELVGKFLGYV 68
Query: 52 ------------VQLLN------ERDV--KRNIHLKPGSLPPMENIANVIFITRPIVKHM 91
Q+LN E +IH L +VK
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--------DTTLVKTK 120
Query: 92 DIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFT---CN 148
++I + I + KR ++ + LF + + E GN ++ F
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALF----------RAVGE----GNAQLVAIFGGQGNT 166
Query: 149 LFPFDNDLVSMEMELA--YREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVS---GKGPC 203
F+ EL Y+ YH+ + + TL L +G
Sbjct: 167 DDYFE--------ELRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 204 VQQVWDLTKRLSLEPKNKNVNQCKTS-------QISQLILIDRNVDVLTPLATQLTYEGL 256
+ + W L S P + S Q++ ++ + + TP + +G
Sbjct: 215 ILE-W-LENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGA 270
Query: 257 IDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGP 316
G+ TA + S E F V +K+I + LF F GV
Sbjct: 271 TGHSQGL--VTAVAIAE--TDSWES--FFVSV--RKAITV-----LF-------FIGV-- 308
Query: 317 YLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQ-------LP-HMINTKKLLANHTNIAEL 368
R + Y S+ ++++ +P M L ++ ++
Sbjct: 309 ----RC--------YEAYPNTSLPP--SILEDSLENNEGVPSPM-----LSISNLTQEQV 349
Query: 369 IKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGL 428
V T L A +++ + +L N V+ SG
Sbjct: 350 QDYVNKTNSHLP---AGKQVEI------SL---VNG-----AKNLVV----------SGP 382
Query: 429 KPKVLEYYKREIIQTYGFQHIL----TLSNLEQAGLLKNSQNSGTRQYTLLRKM---MR- 480
P+ L YG L S L+Q+ + S+ RK+ R
Sbjct: 383 -PQSL----------YGLNLTLRKAKAPSGLDQSR-IPFSE----------RKLKFSNRF 420
Query: 481 LTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTS 540
L V +P F HS L +I +DL
Sbjct: 421 LPV-----ASP----F-HSHL----------LVPASDLINKDL----------------- 443
Query: 541 SRRNRNTQENKMLTFQEASLYTIKGIAILD-NDGHRLLAKYYDPNILSTVKDQKA----- 594
++F + I + D DG L + +I + D
Sbjct: 444 --------VKNNVSFNAKDI----QIPVYDTFDGSDL--RVLSGSISERIVDCIIRLPVK 489
Query: 595 FEKNL-FNKTHRANAEII-----MLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLN 646
+E F TH I+ GL + N D G+ +I+ L+
Sbjct: 490 WETTTQFKATH-----ILDFGPGGASGLGVLTHRNKD------GTGV--RVIVAGTLD 534
Score = 51.2 bits (122), Expect = 1e-06
Identities = 44/255 (17%), Positives = 77/255 (30%), Gaps = 86/255 (33%)
Query: 555 FQEASLYTIK--GIAILD----N-----------DGHRLLAKY----YDPNILSTVKDQK 593
+ A + G +ILD N G R+ Y ++ + +K +K
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 594 AFE--------------KNLFNKTHRANA-------EIIMLEGLTCVYKS--NVDLFFYV 630
F+ K L + T E E L KS +
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSAT--QFTQPALTLMEKAAFEDL----KSKGLIPADATF 1759
Query: 631 MGSSH---ENELILMSVLNCLYDAIS-----QILRK------NVEKRNVLDNLDIVMLAL 676
G H E + L L D +S +++ R+ L + M+A+
Sbjct: 1760 AG--HSLGEY-----AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 677 DEICDGGIIQEADSSAVVQRVALRVDDI--------PLGEQTVAQVFQSGYLQTRSLSIS 728
+ + VV+RV R + +Q VA +G R+L
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQQYVA----AG--DLRALDTV 1865
Query: 729 SNLLAISSARSCSLL 743
+N+L + ++
Sbjct: 1866 TNVLNFIKLQKIDII 1880
Score = 48.9 bits (116), Expect = 7e-06
Identities = 66/409 (16%), Positives = 123/409 (30%), Gaps = 87/409 (21%)
Query: 450 LTLS--NLEQAGLLKNSQNSGTRQYTLLRKMMRLTV-EDSSELAPADINFVHSIYAPLSI 506
LTLS +LE L+ + Q L++ + E + A D
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADD------------- 52
Query: 507 RLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRRNR------NTQENKMLTFQE--- 557
EP+ P +L+ G V + + + ++ EN L +
Sbjct: 53 --------EPTT-PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 558 --ASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIM--- 612
A L ++ L+ Y I++ K LF NA+++
Sbjct: 104 LAAKLLQENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 613 -----------LEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILR--KN 659
L L Y V + + ++ IL +N
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 660 VEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQ-RVALRVDDIPLGEQTVAQVFQSG 718
D L + ++ I G+IQ + V ++ GE + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLI---GVIQ------LAHYVVTAKLLGFTPGE--LRSYLKGA 270
Query: 719 YLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRL--PSLCLRSPTVEI 776
++ L +++ +AI+ S I +L G P+ L +E
Sbjct: 271 TGHSQGL-VTA--VAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILE- 325
Query: 777 IQEADSSAVVQRVA---LRVDDIPLG--EQTVAQVFQS--AKEQLKWSL 818
DS + V L + ++ + V + A +Q++ SL
Sbjct: 326 ----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase,
photosynthetic P sulfur bacterium, iron-sulfur cluster,
NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Length = 561
Score = 31.7 bits (71), Expect = 1.1
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 132 ENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAI 184
E+G + N+ + T N P D + E A ++ H D E+ + I
Sbjct: 497 EDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTI 549
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural
genomics, PSI, protein structure initiative; 2.50A
{Bacillus subtilis} SCOP: d.296.1.1
Length = 220
Score = 29.1 bits (65), Expect = 5.5
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 330 DTQNYHEKSVSEMKTLVQQLP--------HMINTKKLLA--NHTNIAELIKDVTDT--AE 377
+ Y + +T+ + +P H + + + L + + AE
Sbjct: 109 IKEEYGKLLEVNQETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFERLQTVKKAE 168
Query: 378 FLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLI 418
L + ++E L ++ + L I++A L ++ + +
Sbjct: 169 LLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKV 209
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene
regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Length = 102
Score = 27.1 bits (60), Expect = 8.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 74 MENIANVIF-----ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCE 127
++ N +F + I HM++I + K+ E R D +DY L + + LCE
Sbjct: 36 IDKFINAVFCANIPVPEIIEIHMELIDEFSKQLRLEGRGDETLMDYRLTLIDILAHLCE 94
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural
genomics/proteomics initiative, structural genomics;
1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1
PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Length = 111
Score = 27.1 bits (60), Expect = 9.8
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 74 MENIANVIF-----ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCE 127
++ + F +++ + H++++ K+ + E RS+ +DY L + + LCE
Sbjct: 43 IDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLCE 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.378
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,799,634
Number of extensions: 714055
Number of successful extensions: 1395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 28
Length of query: 820
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 719
Effective length of database: 3,881,772
Effective search space: 2790994068
Effective search space used: 2790994068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)