RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8893
(820 letters)
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 226 bits (578), Expect = 2e-65
Identities = 76/576 (13%), Positives = 196/576 (34%), Gaps = 55/576 (9%)
Query: 13 SLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKR--NIHLKPGS 70
+ V + + ++K + K +I D V + + + +I+ +
Sbjct: 4 TAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREP 63
Query: 71 LPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRL 130
LP + +++ P + + + + + + + H+FF + L
Sbjct: 64 LPLL----EAVYLITPTEESVKCLMADFQNPDNPQYRG-----AHIFFTEACPEELFKEL 114
Query: 131 QENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH----LEKDPTCLYEVAQAIIT 186
++ ++ P+++ + S++ ++ Y+ + A+ I T
Sbjct: 115 CKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIAT 174
Query: 187 LQNLYGIIPRVSGKGPC------VQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRN 240
L G P V + Q V + SQL+++DR
Sbjct: 175 LCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEG--PQKDRSQLLILDRG 232
Query: 241 VDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGD 300
D ++PL +LT++ + ++ I N K+ ++ +K ++L+ D
Sbjct: 233 FDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVP-----------EKEVLLDEKD 281
Query: 301 ELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEK-SVSEMKTLVQQLPHMINTKKLL 359
+L+ +R + V ++K+ K + + +K + ++ +++++P
Sbjct: 282 DLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKY 341
Query: 360 ANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMK 413
+ H ++AE EQ++ +G D D + + K
Sbjct: 342 STHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYD 400
Query: 414 VLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYT 473
+++I + G+ + L + + +++++ G+
Sbjct: 401 KIRIILLYIIHKGGISEENLAKLVQH--AHIPAEEKWIINDMQNLGVPIIQDGG------ 452
Query: 474 LLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLE 533
RK+ + + + AD + S + P +++ E + + L G
Sbjct: 453 -RRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAA-VEDKLDTRHYPFLNGGGPRP 510
Query: 534 ETQTTTSSRR---NRNTQENKMLTFQEASLYTIKGI 566
Q S R +++ + + ++ + GI
Sbjct: 511 SCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGI 546
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 223 bits (570), Expect = 3e-64
Identities = 71/513 (13%), Positives = 183/513 (35%), Gaps = 57/513 (11%)
Query: 23 FLELLEKCSGK---KAIIWDDALAGPVGLVANVQLLNERDVKR--NIHLKPGSLPPMENI 77
++++K K K ++ D + + + + +I+ + LP +
Sbjct: 12 MHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSL--- 68
Query: 78 ANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLG 137
+++ P K + + + K K H+FF L ++
Sbjct: 69 -EAVYLITPSEKSVHSLISDFKDPPTAKYRA-----AHVFFTDSCPDALFNELVKSRAAK 122
Query: 138 NFNIIEAFTCNLFPFDNDLVSMEMELAYREYHL----EKDPTCLYEVAQAIITLQNLYGI 193
+ P+++ + S++ +++ ++ + L +A+ I TL
Sbjct: 123 VIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKE 182
Query: 194 IPRVSGKGP------CVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPL 247
P V +G Q + D K + + + + + SQL+++DR D +P+
Sbjct: 183 YPAVRYRGEYKDNALLAQLIQD--KLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPV 240
Query: 248 ATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALR 307
+LT++ + ++ I N K+ + ++ K ++L+ D+L+ ALR
Sbjct: 241 LHELTFQAMSYDLLPIENDVYKYETSGIGEAR-----------VKEVLLDEDDDLWIALR 289
Query: 308 DKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAE 367
K V +++ K S+ + ++ ++ +++++P + H ++AE
Sbjct: 290 HKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAE 349
Query: 368 LIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMKVLKLICMQ 421
EQ++ +G D + + + +++I +
Sbjct: 350 DCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY 408
Query: 422 SFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRL 481
F +G+ + L + I ++N+ G+ + ++ R+ RK
Sbjct: 409 IFLKNGITEENLNKLIQHAQIPPEDSEI--ITNMAHLGVPIVTDSTLRRRSKPERK---- 462
Query: 482 TVEDSSELAPADINFVHSIYAPLSIRLVQRLTR 514
++ + S + P+ +++
Sbjct: 463 -------ERISEQTYQLSRWTPIIKDIMEDTIE 488
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 181 bits (459), Expect = 9e-49
Identities = 82/577 (14%), Positives = 184/577 (31%), Gaps = 60/577 (10%)
Query: 34 KAIIWDDALAGPVGLVANVQLLNERDVK--RNIHLKPGSLPPMENIANVIFITRPIVKHM 91
K +I D + V V L + + I LP + I+ P +++
Sbjct: 45 KVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVP----AIYFVSPTKENI 100
Query: 92 DIIADNIKRKEKEKRSDTRRIDYHLFFVPR--KSLLCE--QRLQENGVLGNFNIIEAFTC 147
DII +++K + + +++ F ++LL + Q++ G +
Sbjct: 101 DIIVNDLKSDKYSE--------FYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYL 152
Query: 148 NLFPFDNDLVSMEMELAYREYHL-----EKDPTCLYEVAQAIITLQNLYGIIPRV-SGKG 201
+ + +L S+E+ AY + E+ +A + IP + + KG
Sbjct: 153 DFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKG 212
Query: 202 PCVQQVWDLTKRL-------SLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYE 254
+ + + + + + + LI++DRN+D + + Y+
Sbjct: 213 GPAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQ 272
Query: 255 GLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGV 314
++ +IF + T P +++ + + K + D + F
Sbjct: 273 CMVFDIFKLSRNTVTIPLESKENGTDNTTAKPL--ATKKYDIEPNDFFWMENSHLPFPEA 330
Query: 315 GPYLSKRAKFISAQF-------------DTQNYHEKSVSEMKTLVQQLPHMINTKKLLAN 361
+ + D +++ +V++LP + K +
Sbjct: 331 AENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDT 390
Query: 362 HTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQ 421
H NI + ++ EQ+ + L +++ L L+ +
Sbjct: 391 HMNIFAALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGK--TNNLEDKLRSFIVL 448
Query: 422 SFTSSGLKPK-----VLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLR 476
TS+ PK V Y+K +++ L Q + S
Sbjct: 449 YLTSTTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAF 508
Query: 477 KMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQ 536
K LT+ L + +L+ P D + + + +
Sbjct: 509 KPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLE 568
Query: 537 TTTSSR-------RNRNTQENKMLTFQEASLYTIKGI 566
TT S R +T++ K ++ ++ ++ + G
Sbjct: 569 TTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGG 605
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 103 bits (257), Expect = 2e-26
Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKS 622
I+ I I + G LAK+Y + + + + +Y+
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 623 NVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDG 682
L+F + ++N L + ++ + +++ NV + +++ N V +DE+
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 683 GIIQEADSSAVVQRVAL 699
G I+E + V++++ +
Sbjct: 121 GEIRETSQTKVLKQLLM 137
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 93.0 bits (231), Expect = 6e-23
Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 563 IKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKS 622
I G+ I ++ G L+++ Y +I D AF N+ + + + + + + +
Sbjct: 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVD--AFRVNVIHARQQVRSPVTNIARTSFFHVK 59
Query: 623 NVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDG 682
+++ + + N ++ L + D ++ + + N+ +N ++ LDEI D
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF-GKISEENIKNNFVLIYELLDEILDF 118
Query: 683 GIIQEADSSAVVQRV 697
G Q +++ A+ +
Sbjct: 119 GYPQNSETGALKTFI 133
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
C-terminal (UDP-binding) domain {Streptococcus pyogenes
[TaxId: 1314]}
Length = 108
Score = 27.9 bits (62), Expect = 1.8
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 274 KFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFT 312
QS ++ E I+ N D +++K+++
Sbjct: 63 SEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYS 101
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 28.1 bits (61), Expect = 4.0
Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 433 LEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPA 492
+E R++ +Q ++ + E L +++G KM + + +
Sbjct: 21 IEGRLRKLFSLKNYQEVMP-PSFEYTQLYTALESNGK--TFNQEKMFQFIKHEGQSITLR 77
Query: 493 DINFVHSIYA 502
+ +
Sbjct: 78 YDFTLPLVRL 87
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 530
Score = 28.3 bits (62), Expect = 4.9
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 120 PRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYE 179
PR L G + NF ++ T NL P + +E A + DP E
Sbjct: 456 PRGMLSHWIVQ-RGGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIA-DPKRPVE 513
Query: 180 VAQAI 184
+ + +
Sbjct: 514 ILRTV 518
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
103690]}
Length = 98
Score = 26.2 bits (58), Expect = 5.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 74 MENIANVIF-----ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCE 127
++ N +F + I HM++I + K+ E R D +DY L + + LCE
Sbjct: 33 IDKFINAVFCANIPVPEIIEIHMELIDEFSKQLRLEGRGDETLMDYRLTLIDILAHLCE 91
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 26.2 bits (58), Expect = 6.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 74 MENIANVIF-----ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCE 127
++N N+ F +T+ + HM+++ + K+ E RS+ +DY L + + LCE
Sbjct: 40 IDNFVNMAFFADVPVTKVVEIHMELMDEFAKKLRVEGRSEDILLDYRLTLIDVIAHLCE 98
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 25.8 bits (57), Expect = 7.9
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 74 MENIANVIF-----ITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCE 127
++ + F +++ + H++++ K+ + E RS+ +DY L + + LCE
Sbjct: 43 IDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLCE 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.378
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,814,726
Number of extensions: 129185
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 13
Length of query: 820
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 727
Effective length of database: 1,130,706
Effective search space: 822023262
Effective search space used: 822023262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)