BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8894
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase In Complex With Gtp
 pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase From Polyethylene Glycol
 pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase From Polyethylene Glycol With Chloride Ions
          Length = 305

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/303 (60%), Positives = 219/303 (72%), Gaps = 15/303 (4%)

Query: 18  YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
           Y A+R +L +   +KVICQGFTGKQGTFHS+QA+EY               THL LPVFN
Sbjct: 2   YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 61

Query: 78  TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
           TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 62  TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 121

Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
            K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 122 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181

Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKXXXXXXXXXXXPNAKPV 242
           CVGIGGDPFNGT+F DCLE+FL DP               E             P +KPV
Sbjct: 182 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 241

Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
           VSFIAG+TAPPGRRM              ++KI AL+ AGV+V+ SPAQ+G  + KE ++
Sbjct: 242 VSFIAGLTAPPGRRMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301

Query: 303 LNL 305
             +
Sbjct: 302 RKM 304


>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase In Complex With Gdp
          Length = 305

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 218/303 (71%), Gaps = 15/303 (4%)

Query: 18  YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
           Y A+R +L +   +KVICQGFTGKQGTFHS+QA+EY               THL LPVFN
Sbjct: 2   YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 61

Query: 78  TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
           TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 62  TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 121

Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
            K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 122 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181

Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKXXXXXXXXXXXPNAKPV 242
           CVGIGGDPFNGT+F DCLE+FL DP               E             P +KPV
Sbjct: 182 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 241

Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
           VSFIAG+TAPPGRRM              ++KI AL+ AGV+V+ SPAQ+G  + KE ++
Sbjct: 242 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301

Query: 303 LNL 305
             +
Sbjct: 302 RKM 304


>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
           Gtp-Specific Succinyl-Coa Synthetase
          Length = 311

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/303 (60%), Positives = 219/303 (72%), Gaps = 15/303 (4%)

Query: 18  YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
           Y A+R +L +   +KVICQGFTGKQGTFHS+QA+EY               THL LPVFN
Sbjct: 8   YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 67

Query: 78  TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
           TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 68  TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 127

Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
            K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 128 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 187

Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKXXXXXXXXXXXPNAKPV 242
           CVGIGGDPFNGT+F DCLE+FL DP               E             P +KPV
Sbjct: 188 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 247

Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
           VSFIAG+TAPPGRRM              ++KI AL+ AGV+V+ SPAQ+G  + KE ++
Sbjct: 248 VSFIAGLTAPPGRRMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 307

Query: 303 LNL 305
             +
Sbjct: 308 RKM 310


>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
           Specific Succinyl-Coa Synthetase
          Length = 311

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 218/303 (71%), Gaps = 15/303 (4%)

Query: 18  YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
           Y A+R +L +   +KVICQGFTGKQGTFHS+QA+EY               THL LPVFN
Sbjct: 8   YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 67

Query: 78  TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
           TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 68  TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 127

Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
            K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 128 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 187

Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKXXXXXXXXXXXPNAKPV 242
           CVGIGGDPFNGT+F DCLE+FL DP               E             P +KPV
Sbjct: 188 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 247

Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
           VSFIAG+TAPPGRRM              ++KI AL+ AGV+V+ SPAQ+G  + KE ++
Sbjct: 248 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 307

Query: 303 LNL 305
             +
Sbjct: 308 RKM 310


>pdb|1JKJ|A Chain A, E. Coli Scs
 pdb|1JKJ|D Chain D, E. Coli Scs
 pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
           Coli Scs
 pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
           Coli Scs
          Length = 288

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 179/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
           Synthetase From Escherichia Coli
 pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
           Synthetase From Escherichia Coli
 pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
           Escherichia Coli At 2.5 Angstroms Resolution
 pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
           Escherichia Coli At 2.5 Angstroms Resolution
          Length = 288

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/289 (51%), Positives = 180/289 (62%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
           Dephosphorylated E. Coli Succinyl-Coa Synthetase
 pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
           Dephosphorylated E. Coli Succinyl-Coa Synthetase
 pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
           Synthetase
 pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
           Synthetase
          Length = 286

 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 177/284 (62%), Gaps = 12/284 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNEL 296
            G+RM               +K  ALE AGV   RS A +G  L
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEAL 283


>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
 pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
          Length = 288

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 178/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPN PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
 pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
          Length = 288

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 178/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPN PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNVPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
 pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
          Length = 288

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 178/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPN PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
 pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
          Length = 288

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 179/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPN PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNAPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
           Orthorhombic Crystal Form
 pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
           Orthorhombic Crystal Form
 pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
           Orthorhombic Crystal Form
 pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
           Orthorhombic Crystal Form
          Length = 288

 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 179/289 (61%), Gaps = 12/289 (4%)

Query: 24  NLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEAR 83
           ++ +   +KVICQGFTG QGTFHS+QAI Y               THL LPVFNTV+EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 84  DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
            ATGA A+VIYVP P    +I EA+DA + LI+ ITEGIP LDM+ VK +L  ++  R+I
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 119

Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
           GPN PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT  G GQ+ CVGIGG
Sbjct: 120 GPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 204 DPFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAP 252
           DP  G+NFID LE+F KDP+T+                         KPVV +IAG+TAP
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 239

Query: 253 PGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
            G+RM               +K  ALE AGV   RS A +G  L   +K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288


>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
           From Aeropyrum Pernix K1
          Length = 297

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 164/289 (56%), Gaps = 14/289 (4%)

Query: 27  LTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEA-RDA 85
           + S+++V+ QG TG++G+FH+K  +EY                   +PV+++VKEA  + 
Sbjct: 10  VDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEH 69

Query: 86  TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145
                ++++VP P A  A++EA+DA + L+V ITEGIP  D ++  +   RQ  + +IGP
Sbjct: 70  PEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVN-YARQKGATIIGP 128

Query: 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP 205
           NCPG I P Q K+GIMPGHI + G V VVSRSGTLTYE  +  T+ G+GQ+  +GIGGDP
Sbjct: 129 NCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDP 188

Query: 206 FNGTNFIDCLEVFLKDPETKXXX------------XXXXXXXXPNAKPVVSFIAGITAPP 253
             G +F + L++F +DP+T+                          KPV+++IAG TAPP
Sbjct: 189 IVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTAPP 248

Query: 254 GRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
            +RM              + K+ AL +AGV V  +P ++   + K ++R
Sbjct: 249 EKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALRR 297


>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
           From Methanocaldococcus Jannaschii Dsm 2661
          Length = 294

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 148/274 (54%), Gaps = 11/274 (4%)

Query: 25  LRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEARD 84
           + L   +K I QG TG+QG+FH+K+ +E                    +PVF+TVKEA  
Sbjct: 8   ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67

Query: 85  ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
            T A A+VI+VP P A  A+ EA+DA + LIV ITE IP  D ++  +        ++IG
Sbjct: 68  ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYA-EDVGVKIIG 126

Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
           PN PGI +P+  K+GI+P  + + G VG+VSRSGTLTYE  HQ  + G G + CVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186

Query: 205 PFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPNA----------KPVVSFIAGITAPPG 254
           P  G  + + L++F KD ET+                        KPV+ +IAG +AP G
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEKMKKPVIGYIAGQSAPEG 246

Query: 255 RRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRS 288
           +RM              + K+ ALE+AG  V ++
Sbjct: 247 KRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKN 280


>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
           Gdp-mn2+
 pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
           Gdp-mn2+
 pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
           Gdp-mn2+
 pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
           Gdp-mn2+
          Length = 296

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 163/291 (56%), Gaps = 13/291 (4%)

Query: 25  LRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEARD 84
           + +  +++V+ QG TG++G FH+KQ + Y                 L +PV++TVKEA  
Sbjct: 2   ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61

Query: 85  ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
               +A++I+VP P AA A  EA  A +PLIV ITEGIP LDMV+     I+   SRLIG
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEE-IKALGSRLIG 120

Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
            NCPGII+ E+ KIGIMPGH+ +RG VG++SRSGTLTYEA    +Q GLG T  VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180

Query: 205 PFNGTNFIDCLEVFLKDPETKXXXXXXXXXXXPN-----------AKPVVSFIAGITAPP 253
           P  GT F D L +F +DPET+                         KPVV FI G +AP 
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPK 240

Query: 254 GRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLN 304
           G+RM              + K+ A  +AG+ V  +  ++  EL+K+    N
Sbjct: 241 GKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEI-VELVKKALGWN 290


>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
           Subunit From Thermus Thermophilus
          Length = 288

 Score =  171 bits (433), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 151/265 (56%), Gaps = 12/265 (4%)

Query: 30  KSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFNTVKEARDATGAE 89
           +++V+ QG TG++G FH+KQ + Y                 L +PV++TVKEA      +
Sbjct: 7   ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVD 66

Query: 90  ATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149
           A++I+VP P AA A  EA  A +PLIV ITEGIP LDMV+     I+   SRLIG NCPG
Sbjct: 67  ASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEE-IKALGSRLIGGNCPG 125

Query: 150 IIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGT 209
           II+ E+ KIGIMPGH+ +RG VG++SRSGTLTYEA    +Q GLG T  VGIGGDP  GT
Sbjct: 126 IISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGT 185

Query: 210 NFIDCLEVFLKDPETKXXXXXXXXXXXPNA-----------KPVVSFIAGITAPPGRRMX 258
            F D L +F +DPET+                         KPVV FI G +AP G+RM 
Sbjct: 186 TFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMG 245

Query: 259 XXXXXXXXXXXXXQDKIDALEKAGV 283
                        + K+ A  +AG+
Sbjct: 246 HAGAIIMGNVGTPESKLRAFAEAGI 270


>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
           Bound
          Length = 829

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 73  LPVFNTVKEA-RDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKV 130
           +PVF  + +A R     +  + +     A  +  E ++ A++  I  I EGIP+     +
Sbjct: 550 IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE----AL 605

Query: 131 KHRLIRQSKSR---LIGPNCPGIIAPEQCKIG--------IMPGHIHQRGCVGVVSRSGT 179
             +LI+++  +   +IGP   G I P   KIG        I+   +++ G V  VSRSG 
Sbjct: 606 TRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGG 665

Query: 180 LTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225
           ++ E  +  ++   G    V IGGD + G+ F+D +  +   P  K
Sbjct: 666 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVK 711


>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
          Length = 335

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 73  LPVFNTVKEA-RDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKV 130
           +PVF  + +A R     +  + +     A  +  E ++ A++  I  I EGIP+     +
Sbjct: 64  IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE----AL 119

Query: 131 KHRLIRQSKSR---LIGPNCPGIIAPEQCKIG--------IMPGHIHQRGCVGVVSRSGT 179
             +LI+++  +   +IGP   G I P   KIG        I+   +++ G V  VSRSG 
Sbjct: 120 TRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGG 179

Query: 180 LTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225
           ++ E  +  ++   G    V IGGD + G+ F+D +  +   P  K
Sbjct: 180 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVK 225


>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
          Length = 334

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 17/166 (10%)

Query: 73  LPVFNTVKEA-RDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKV 130
           +PVF    +A R     +  + +     A  +  E  + A++  I  I EGIP+     +
Sbjct: 64  IPVFKNXADAXRKHPEVDVLINFASLRSAYDSTXETXNYAQIRTIAIIAEGIPE----AL 119

Query: 131 KHRLIRQSKSR---LIGPNCPGIIAPEQCKIG--------IMPGHIHQRGCVGVVSRSGT 179
             +LI+++  +   +IGP   G I P   KIG        I+   +++ G V  VSRSG 
Sbjct: 120 TRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLYRPGSVAYVSRSGG 179

Query: 180 LTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225
            + E  +  ++   G    V IGGD + G+ F D +  +   P  K
Sbjct: 180 XSNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVK 225


>pdb|2CSU|A Chain A, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
 pdb|2CSU|B Chain B, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
          Length = 457

 Score = 35.0 bits (79), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 127 MVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVH 186
           +V++ H+       R+IGPNC G I      +      + ++G V  +S+SG L    V+
Sbjct: 113 LVEIAHKY----GXRIIGPNCVG-IXNTHVDLNATFITVAKKGNVAFISQSGALGAGIVY 167

Query: 187 QTTQ--VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPE 223
           +T +  +G  + + VG   D     +F +  E +L D E
Sbjct: 168 KTIKEDIGFSKFISVGNXAD----VDFAELXE-YLADTE 201


>pdb|3DMY|A Chain A, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
           E.Coli
 pdb|3DMY|B Chain B, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
           E.Coli
          Length = 480

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 88  AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147
           A   +I V    AA+  ++ALD  +  +   ++ +   D +++K R  R+    + GP+C
Sbjct: 37  ANLALISVAGEYAAELANQALDRNLN-VXXFSDNVTLEDEIQLKTR-AREKGLLVXGPDC 94

Query: 148 PGIIAPEQCKIGIMP---GHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
                     I   P    ++   G +GV+  SGT   E   Q    G G T  +G+GG 
Sbjct: 95  G------TSXIAGTPLAFANVXPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGR 148

Query: 205 PFN----GTNFIDCLEVFLKDPETK 225
             +    G + +  LE    D +++
Sbjct: 149 DLSREVGGISALTALEXLSADEKSE 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,930,527
Number of Sequences: 62578
Number of extensions: 287902
Number of successful extensions: 528
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 21
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)