BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8894
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3
Length = 328
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/319 (75%), Positives = 262/319 (82%), Gaps = 22/319 (6%)
Query: 3 FVA-IRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61
FVA +R NS Y TR NL+L S+VICQGFTGKQGTFHS+QA+EYGTK+VGG+
Sbjct: 15 FVAGVRCNSQ------YNKTRGNLKLNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGI 68
Query: 62 SPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121
SP KGG HL LPVF +V EA+ AT ATVIYVPPPGAA AI EAL+AE+PLIVCITEG
Sbjct: 69 SPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEG 128
Query: 122 IPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLT 181
+PQ DMVKVKH LI QSKSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLT
Sbjct: 129 VPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLT 188
Query: 182 YEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII------------- 228
YEAVHQTT+VGLGQTLCVGIGGDPFNGT+FIDCLEVFLKDPETKGII
Sbjct: 189 YEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKA 248
Query: 229 --LIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT 286
+ E G AKPVVSFIAG++APPGRRMGHAGAIISGGKGGA DKI ALEKAGVIVT
Sbjct: 249 ADYLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVT 308
Query: 287 RSPAQMGNELLKEMKRLNL 305
RSPA+MG+EL KEMKRL L
Sbjct: 309 RSPAKMGHELFKEMKRLEL 327
>sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment)
OS=Columba livia GN=SUCLG1 PE=1 SV=1
Length = 306
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/303 (69%), Positives = 255/303 (84%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y+A+R NL ++ +KVICQGFTGKQGTFHS+QA++YGT +VGG+SPGKGGKTHL LPVFN
Sbjct: 3 YSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLVGGISPGKGGKTHLGLPVFN 62
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
+VKEA++ TGA ATVIYVPPP AA AI+EA+DAEMPL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 63 SVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMVRVKHRLVRQ 122
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RL+GPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQT+QVGLGQ+L
Sbjct: 123 DKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTSQVGLGQSL 182
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPET---------------KGIILIGEIGGGPNAKPV 242
C+GIGGDPFNGTNFIDCL+VFLKDP T + E GPNAKPV
Sbjct: 183 CIGIGGDPFNGTNFIDCLDVFLKDPHTEGIILIGEIGGNAEEDAAAFLKENNSGPNAKPV 242
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G+ + KE ++
Sbjct: 243 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQNAGVVVSMSPAQLGSTIYKEFEK 302
Query: 303 LNL 305
L
Sbjct: 303 RKL 305
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=3
SV=1
Length = 322
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/309 (66%), Positives = 238/309 (77%), Gaps = 18/309 (5%)
Query: 6 IRNNS---SKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62
I NN+ K A Y +T NL++ +KVI QGFTGKQGTFH KQ +EY TKVVGGV+
Sbjct: 6 IANNARTLQKGAARFYNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVN 65
Query: 63 PGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122
K G HL LPVF V EAR+ TGA+A+VIYVP A AI EA+DAE+PL+VCITEGI
Sbjct: 66 ANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGI 125
Query: 123 PQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182
PQ DMV+VK RL++Q+K+RL+GPNCPGII+ +QCKIGIMPGHIH+RGC+G+VSRSGTLTY
Sbjct: 126 PQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTY 185
Query: 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK---------------GI 227
EAVHQTTQVG GQTLCVGIGGDPFNGTNFIDCL VFL+DPETK
Sbjct: 186 EAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAA 245
Query: 228 ILIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTR 287
+ E G N KPVVSFIAG+TAPPGRRMGHAGAIISGGKG A DKI+AL +AGV+VT
Sbjct: 246 AYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTD 305
Query: 288 SPAQMGNEL 296
SPA++G +
Sbjct: 306 SPAKLGTSM 314
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2
Length = 346
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/303 (72%), Positives = 258/303 (85%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R N+ + +KVICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGGK HL LPVFN
Sbjct: 43 YTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKH+L RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPGII P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---------------GPNAKPV 242
C+GIGGDPFNGTNFIDCL+VFLKDP T+GI+LIGEIGG GP AKPV
Sbjct: 223 CIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVIV+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=scsA PE=1 SV=3
Length = 315
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/297 (69%), Positives = 245/297 (82%), Gaps = 12/297 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
+ +T+P++ + +KVICQGFTG QGTFHSKQAIEYGT +VGGVSPGKGG+ HLDLPVFN
Sbjct: 15 FFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFN 74
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ATGA ATVIYVPPP AA AI EA+DAEM L+VCITEGIPQ DMVKVK+ L +Q
Sbjct: 75 TVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQ 134
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+K+RLIGPNCPGII P +CKIGIMPGHIH+ G +G+VSRSGTLTYEAV QTT VGLGQ+
Sbjct: 135 NKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQST 194
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIG------------EIGGGPNAKPVVSF 245
C+GIGGDPFNGTNFIDCL++F +DP+T+GIILIG + P KPVVSF
Sbjct: 195 CIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSF 254
Query: 246 IAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
IAG++APPGRRMGHAGAIISGGKG A KI+AL+ AGV VT SPA++G +L++M
Sbjct: 255 IAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNE 311
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Mus musculus GN=Suclg1 PE=1 SV=4
Length = 346
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/303 (67%), Positives = 247/303 (81%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R ++ + +K+ICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGG+ HL LPVFN
Sbjct: 43 YTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKGIILIGEIGGGPNAKPV 242
C+GIGGDPFNGT+FIDCLEVFL DP E + E GP AKPV
Sbjct: 223 CIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
bellii (strain RML369-C) GN=sucD PE=3 SV=1
Length = 291
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/285 (68%), Positives = 238/285 (83%), Gaps = 13/285 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGGKTHLDLP++NTV EA+
Sbjct: 3 ILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPPP AA +I EA+DA + ++VCITEGIP LDMV+VK L+ S++RLIG
Sbjct: 63 KTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALV-GSRTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPGII P++CKIGIMPGHIH++G +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGD
Sbjct: 122 PNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP--NA----------KPVVSFIAGITAP 252
P NGTNF+DC+++FL+D ETK II+IGEIGG NA KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELL 297
PG+RMGHAGAII+GGKG A+DK++AL+ AGV +TRSPA +G +L
Sbjct: 242 PGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTML 286
>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1
Length = 292
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/290 (67%), Positives = 234/290 (80%), Gaps = 13/290 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THLDLPV+NTV EA+
Sbjct: 3 ILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPP AA +I EA+DAE+ ++VCITEGIP LDMVKVK L+ SK+RLIG
Sbjct: 63 KTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALV-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+RG +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGTNF+DC+++FLKD ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
PG+RMGHAGAII+GGKG A+DK++AL+ AGV +TRSPA +G + + +
Sbjct: 242 PGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291
>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Solanum lycopersicum GN=SCOA PE=1 SV=1
Length = 332
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 236/298 (79%), Gaps = 12/298 (4%)
Query: 20 ATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTV 79
A P + + ++VICQG TGK GTFH++QAIEYGTK+VGGV+P KGG HL LPVFNTV
Sbjct: 34 AAPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV 93
Query: 80 KEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSK 139
+EA+ T A A+VIYVPPP AA AI E L+AE+ LIVCITEGIPQ DMV+VK L +QS+
Sbjct: 94 EEAKAETKANASVIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSR 153
Query: 140 SRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCV 199
+RLIGPNCPGII P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ CV
Sbjct: 154 TRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCV 213
Query: 200 GIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP------------NAKPVVSFIA 247
GIGGDPFNGTNF+DCLE F+ DP+T+GI+LIGEIGG KPVV+FIA
Sbjct: 214 GIGGDPFNGTNFVDCLEKFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIA 273
Query: 248 GITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
G+TAPPGRRMGHAGAI+SGGKG AQDKI AL++AGV V SPA++G +L+ K+ L
Sbjct: 274 GLTAPPGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331
>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3
SV=1
Length = 292
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/290 (66%), Positives = 233/290 (80%), Gaps = 13/290 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K++VICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THLDLPV+NTV EA+
Sbjct: 3 ILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPP AA +I EA+DAE+ ++VCITEGIP LDMVKVK L+ SK+RLIG
Sbjct: 63 KTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALV-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+RG +G+VSRSGTLTYEAV QTT VGLGQ+ C+GIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGTNF+DC+E+FLKD ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
PG+RMGHAGAII G G A+DK++AL+ AGVI+TRSPA +G +L + +
Sbjct: 242 PGKRMGHAGAIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291
>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
prowazekii (strain Madrid E) GN=sucD PE=3 SV=1
Length = 292
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/291 (65%), Positives = 232/291 (79%), Gaps = 13/291 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THL+LPV+NTV EA+
Sbjct: 3 ILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPP AA +I EA+DA++ ++VCITEGIP LDM+KVK LI SK+RLIG
Sbjct: 63 KTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALI-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+ G +G+VSRSGTLTYEAV QTT GLGQ+ CVGIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGT+F+DC+E+FL+D ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
+RMGHAGAIISGGKG A+DK++ L+ AGVI+TRSPA +G +L + ++
Sbjct: 242 ADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNKI 292
>sp|Q9P727|SUCA_NEUCR Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=8D4.130 PE=3 SV=1
Length = 333
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/316 (62%), Positives = 232/316 (73%), Gaps = 20/316 (6%)
Query: 5 AIRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64
A +NSS YAAT NL++ +KV+ QGFTGKQGTFH++QAIEYGT VVGG +P
Sbjct: 22 AYSSNSSP-----YAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPK 76
Query: 65 KGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQ 124
K G+THLD PVF+ V EA TGA AT I+VPPP AA I EAL AE+PL VCITEGIPQ
Sbjct: 77 KAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQ 136
Query: 125 LDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEA 184
DMV++ L QSK+RL+GPNCPGIIAP QCKIGIMPG IH+RG +G+VSRSGTLTYEA
Sbjct: 137 HDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEA 196
Query: 185 VHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPET---------------KGIIL 229
V+QTTQ GLGQ+L VGIGGDPF+GTNFIDCL+VFL+D +T +
Sbjct: 197 VNQTTQAGLGQSLVVGIGGDPFSGTNFIDCLKVFLEDGDTDGIIMIGEIGGSAEEEAADF 256
Query: 230 IGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSP 289
+ E KPVVSFIAGI+APPGRRMGHAGAI++GGKGGA KI ALE AGV+V RSP
Sbjct: 257 LKEYNTKNGGKPVVSFIAGISAPPGRRMGHAGAIVAGGKGGADSKIKALEAAGVVVERSP 316
Query: 290 AQMGNELLKEMKRLNL 305
A +G L E R +L
Sbjct: 317 ASLGKALRDEFVRRDL 332
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Homo sapiens GN=SUCLG1 PE=1 SV=4
Length = 346
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/303 (67%), Positives = 250/303 (82%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R +L + +K+ICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGG+THL LPVFN
Sbjct: 43 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA++AE+PL+VCITEGIPQ DMV+VKH+L+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 EKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKGIILIGEIGGGPNAKPV 242
CVGIGGDPFNGT+FIDCLE+FL D E + + GPN+KPV
Sbjct: 223 CVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Sus scrofa GN=SUCLG1 PE=1 SV=2
Length = 346
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/303 (67%), Positives = 248/303 (81%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA+EYGT +VGG +PGKGGKTHL LPVFN
Sbjct: 43 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKGIILIGEIGGGPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP E + + GP +KPV
Sbjct: 223 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1
Length = 292
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/291 (64%), Positives = 232/291 (79%), Gaps = 13/291 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THL+LPV+NTV EA+
Sbjct: 3 ILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
T A A+VIYVPP AA +I EA+DA++ ++VCITEGIP LDMVKVK LI SK+RLIG
Sbjct: 63 KTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRALI-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ C+GIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGT+F++C+E+FL+D ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
+RMGHAGAIISGGKG A+DK++AL+ AGV +T+SPA +G +L + ++
Sbjct: 242 SDKRMGHAGAIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNKI 292
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/287 (66%), Positives = 225/287 (78%), Gaps = 12/287 (4%)
Query: 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA 90
++V+CQG TGK GTFH++QAIEYGTK+V GV+P KGG HL LPVFN+V EA+ T A A
Sbjct: 58 TRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANA 117
Query: 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150
+VIYVP P AA AI E ++AE+ LIVCITEGIPQ DMV+VKH L QSK+RLIGPNCPGI
Sbjct: 118 SVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGI 177
Query: 151 IAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTN 210
I P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPFNGTN
Sbjct: 178 IKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTN 237
Query: 211 FIDCLEVFLKDPETKGIILIGEIGGGP------------NAKPVVSFIAGITAPPGRRMG 258
F+DCLE F DP+T+GI+LIGEIGG KPVV+FIAG+TAPPGRRMG
Sbjct: 238 FVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMG 297
Query: 259 HAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
HAGAI+SGGKG AQDKI +L AGV V SPA++G+ + + + L
Sbjct: 298 HAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGL 344
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/287 (66%), Positives = 222/287 (77%), Gaps = 12/287 (4%)
Query: 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA 90
++VICQG TGK GTFH++QAIEYGTK+V GV+P KGG HL LPVFNTV EA+ T A A
Sbjct: 53 TRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANA 112
Query: 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150
+VIYVP P AA AI E L AE+ LIVCITEGIPQ DMV+VK L QSK+RLIGPNCPGI
Sbjct: 113 SVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGI 172
Query: 151 IAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTN 210
I P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPFNGTN
Sbjct: 173 IKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTN 232
Query: 211 FIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAPPGRRMG 258
F+DCLE F DP+T+GI+LIGEIGG KPVV+FIAG+TAPPGRRMG
Sbjct: 233 FVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMG 292
Query: 259 HAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
HAGAI+SGGKG AQDKI +L AGV V SPA++G + + + L
Sbjct: 293 HAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGL 339
>sp|Q58DR8|SUCA_BOVIN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Bos taurus GN=SUCLG1 PE=2 SV=3
Length = 346
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/303 (66%), Positives = 245/303 (80%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y +R +L + +K+ICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGGKTHL LPVFN
Sbjct: 43 YTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP A AI EA++AE+ L+VCITEGIPQ DMV+VKH+L+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RL+GPNCPG+I P +CKIGIMPGHIH++G VG+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKGIILIGEIGGGPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP E + + GP AKPV
Sbjct: 223 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0577700 PE=1 SV=1
Length = 331
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/295 (66%), Positives = 233/295 (78%), Gaps = 12/295 (4%)
Query: 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA 82
P + + ++VICQG TGK GTFH++QAIEYGT +VGGV+P KGG HL LPVFN+V EA
Sbjct: 35 PAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEA 94
Query: 83 RDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRL 142
+ T A A+VIYVPPP AA AI EA++AE+ L+VCITEGIPQ DMVKVK L +QSK+RL
Sbjct: 95 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRL 154
Query: 143 IGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIG 202
IGPNCPGII P +CKIGIMPG+IH+ G VG+VSRSGTLTYEAV QTT VGLGQ+ CVGIG
Sbjct: 155 IGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 214
Query: 203 GDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGIT 250
GDPFNGTNF+DCLE F+ DP+T+GI+LIGEIGG KPVV+FIAG+T
Sbjct: 215 GDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAGLT 274
Query: 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
APPGRRMGHAGAI+SGGKG AQDKI AL +AGV V SPA++G+ + + K+ +
Sbjct: 275 APPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329
>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Solanum lycopersicum PE=1 SV=1
Length = 337
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 12/295 (4%)
Query: 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA 82
P + + ++VICQG TGK GTFH++QAIEYGTK+VGGV+P KGG HL LPVFNTV EA
Sbjct: 42 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 101
Query: 83 RDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRL 142
+ T A A+V+YVPPP AA AI EA++AE+ L+VCITEGIPQ DMV+VK L +Q ++RL
Sbjct: 102 KVETKANASVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRL 161
Query: 143 IGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIG 202
IGPNCPGII P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIG
Sbjct: 162 IGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 221
Query: 203 GDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP------------NAKPVVSFIAGIT 250
GDPFNGTNF+DCLE F+ DP+T+GI+LIGEIGG KPVV+FIAG+T
Sbjct: 222 GDPFNGTNFVDCLERFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLT 281
Query: 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
APPGRRMGHAGAI+SGGKG AQDKI AL++AGV V SPA++G +L K+ L
Sbjct: 282 APPGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQRGL 336
>sp|P53591|SUCD_COXBU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=sucD
PE=3 SV=2
Length = 294
Score = 363 bits (931), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 224/282 (79%), Gaps = 11/282 (3%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +++V+CQGFTGKQGTFHS+QAIEYGT++VGGV+PGKGG++HL LP+FN+V EA
Sbjct: 2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ T A+AT+I+VP P +I EA+DA + L+VCITEGIP LDM++VK L + R+I
Sbjct: 62 EETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMI 121
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P +CKIGIMPGHIHQRG VG+VSRSGTLTYEAV+QTTQ+G GQ+ CVGIGG
Sbjct: 122 GPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTTQMGFGQSTCVGIGG 181
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAP 252
DP GT+FID LE+F KD +T+ I+++GEIGG KPV+S+IAG+TAP
Sbjct: 182 DPIPGTSFIDVLEMFEKDSQTQAIVMVGEIGGTAEEEAAEFIQSNVKKPVISYIAGVTAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGN 294
PG+RMGHAGAII+GGKG A DK ALE AGV V +SPA++G
Sbjct: 242 PGKRMGHAGAIIAGGKGTAADKYAALEAAGVFVVKSPAEIGK 283
>sp|P45102|SUCD_HAEIN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=sucD PE=3 SV=1
Length = 293
Score = 351 bits (901), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 180/288 (62%), Positives = 217/288 (75%), Gaps = 12/288 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + +KVICQGFTG QGTFHS+QA+ YGT++VGGVSP KGG THL LPVFNTV+EA +
Sbjct: 3 ILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAVE 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TG ATVIYVP AI EA+DA + LIVCITEGIP LDM+KVK +L ++ +IG
Sbjct: 63 NTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKL-NETGVVMIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P++CKIGIMP HIH++G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGGD
Sbjct: 122 PNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTTDEGFGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAPP 253
P G++FID LE F +DPET+ I++IGEIGG KPVV++IAGITAP
Sbjct: 182 PIPGSSFIDILERFQQDPETEAIVMIGEIGGSAEEEAAIFIKDNVTKPVVAYIAGITAPK 241
Query: 254 GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
G+RMGHAGAIISGGKG A +KI ALE AGV +S A++G L K +K
Sbjct: 242 GKRMGHAGAIISGGKGTAVEKIAALEAAGVTCVKSLAEIGEALRKLLK 289
>sp|Q51567|SUCD_PSEAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=sucD PE=3 SV=2
Length = 295
Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 212/284 (74%), Gaps = 12/284 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTVKEA
Sbjct: 2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ATGAEA+VIYVP P +I EA + LIVCITEGIP LDM+ K + + RLI
Sbjct: 62 EATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKC-DELGVRLI 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P +CKIGIMPGHIH G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP G+NFID L++F +DP+T+ I++IGEIGG KPVVS+IAG+TAP
Sbjct: 181 DPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIKANVTKPVVSYIAGVTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNEL 296
PG+RMGHAGAIISGGKG A +K AL+ AGV RS A +G L
Sbjct: 241 PGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKAL 284
>sp|P0AGE9|SUCD_ECOLI Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
(strain K12) GN=sucD PE=1 SV=2
Length = 289
Score = 348 bits (893), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/289 (61%), Positives = 215/289 (74%), Gaps = 12/289 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTV+EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
ATGA A+VIYVP P +I EA+DA + LI+ ITEGIP LDM+ VK +L ++ R+I
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP G+NFID LE+F KDP+T+ I++IGEIGG KPVV +IAG+TAP
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
G+RMGHAGAII+GGKG A +K ALE AGV RS A +G L +K
Sbjct: 241 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|P0AGF0|SUCD_ECOL6 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sucD PE=3
SV=2
Length = 289
Score = 348 bits (893), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/289 (61%), Positives = 215/289 (74%), Gaps = 12/289 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTV+EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
ATGA A+VIYVP P +I EA+DA + LI+ ITEGIP LDM+ VK +L ++ R+I
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP G+NFID LE+F KDP+T+ I++IGEIGG KPVV +IAG+TAP
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
G+RMGHAGAII+GGKG A +K ALE AGV RS A +G L +K
Sbjct: 241 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|P0AGF1|SUCD_ECO57 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O157:H7 GN=sucD PE=3 SV=2
Length = 289
Score = 348 bits (893), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/289 (61%), Positives = 215/289 (74%), Gaps = 12/289 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTV+EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
ATGA A+VIYVP P +I EA+DA + LI+ ITEGIP LDM+ VK +L ++ R+I
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMI 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP G+NFID LE+F KDP+T+ I++IGEIGG KPVV +IAG+TAP
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
G+RMGHAGAII+GGKG A +K ALE AGV RS A +G L +K
Sbjct: 241 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|P80865|SUCD_BACSU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus
subtilis (strain 168) GN=sucD PE=1 SV=3
Length = 300
Score = 347 bits (889), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 175/293 (59%), Positives = 213/293 (72%), Gaps = 12/293 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + ++VI QG TG FH+KQ +EYGT +VGGV+PGKGG +PVFNTV EA
Sbjct: 2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
TGA A+VIYVP P AA AI EA+DAE+ L++CITE IP LDMVKVK R + K+RLI
Sbjct: 62 QTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVK-RFMEGKKTRLI 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I PE+CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ ++ G+GQ+ VGIGG
Sbjct: 121 GPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +DP+T +I+IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWVKANMTKPVVGFIGGKTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
PG+RMGHAGAIISGGKG A +KI L G+ V +P+ MG L+K +K NL
Sbjct: 241 PGKRMGHAGAIISGGKGTADEKIKTLNACGIEVAETPSVMGETLIKVLKEKNL 293
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC16E8.17c PE=3 SV=1
Length = 331
Score = 346 bits (888), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/321 (59%), Positives = 236/321 (73%), Gaps = 20/321 (6%)
Query: 3 FVAIRNNSS----KVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVV 58
++R SS K ++ +Y T PNL + S +KVI QGFTGKQGTFH++ A++YGTKVV
Sbjct: 9 LTSLRRFSSSSQLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVV 68
Query: 59 GGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCI 118
GG +P K G THL PVF T++EA T A+A+ ++VPPP AA AI EA+ AE+PLIV I
Sbjct: 69 GGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAI 128
Query: 119 TEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSG 178
TEGIPQ DM++V L QSKSRL+GPNCPGII P QCKIGIMP HIH+ GC+G+VSRSG
Sbjct: 129 TEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSG 188
Query: 179 TLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILI-------- 230
TLTYEAV+QTTQ LGQ+L +GIGGDPF GTNFID L++FL DP T+GIILI
Sbjct: 189 TLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAE 248
Query: 231 ---GEIGGGPNA-----KPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG 282
E NA KPVVSFIAG TAP GRRMGHAGAI++GGKG A K +ALE AG
Sbjct: 249 EDAAEFIRAANASRSTPKPVVSFIAGATAPKGRRMGHAGAIVAGGKGTAAAKFEALEAAG 308
Query: 283 VIVTRSPAQMGNELLKEMKRL 303
V ++RSPA +G+ +++E+ +L
Sbjct: 309 VRISRSPATLGSLIVEELNKL 329
>sp|Q8NX01|SUCD_STAAW Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=sucD PE=3 SV=1
Length = 302
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|Q6G9W7|SUCD_STAAS Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=sucD PE=3 SV=1
Length = 302
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|Q6GHI9|SUCD_STAAR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=sucD PE=3 SV=1
Length = 302
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|P99070|SUCD_STAAN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain N315) GN=sucD PE=1 SV=1
Length = 302
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|P66866|SUCD_STAAM Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1
Length = 302
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|Q5HGI6|SUCD_STAAC Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain COL) GN=sucD PE=3 SV=1
Length = 302
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 216/294 (73%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGTK+V GV+PGKGG+ +PVFNTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +VIYVP P AA +I EA DA++ +++CITE IP LDMVKVK R ++ K+RL+
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A++KI L GV +P+++G+ L++ K ++
Sbjct: 241 PGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIY 294
>sp|Q5HPU4|SUCD_STAEQ Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3
SV=1
Length = 302
Score = 329 bits (844), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 214/294 (72%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGT++V GV+PGKGG+ +PV+NTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +V+YVP P AA +I EA DA++ +++CITE IP +DMVKVK R ++ K+RL+
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPVV FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKENMNKPVVGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A +KI L GV +P+++G L+ K+ ++
Sbjct: 241 PGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGIY 294
>sp|Q8CPH4|SUCD_STAES Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1
Length = 302
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 214/294 (72%), Gaps = 12/294 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + +KV+ QG TG FH+KQ ++YGT++V GV+PGKGG+ +PV+NTV+EA+
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
+ TGA +V+YVP P AA +I EA DA++ +++CITE IP +DMVKVK R ++ K+RL+
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVK-RYLQGRKTRLV 120
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I ++CKIGIMPG+IH++G VGVVSRSGTLTYEAVHQ T+ G+GQT VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAP 252
DP NGTNFID L+ F +D ETK +++IGEIGG KPV+ FI G TAP
Sbjct: 181 DPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKENMNKPVIGFIGGQTAP 240
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAIISGGKG A +KI L GV +P+++G L+ K+ ++
Sbjct: 241 PGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGIY 294
>sp|O67547|SUCD_AQUAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus
(strain VF5) GN=sucD PE=3 SV=1
Length = 305
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 212/294 (72%), Gaps = 12/294 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + +KV+ QG TGK+G+FH+KQ EYGT+VV GV+PGKGG +PVFNTVKEA
Sbjct: 3 ILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVK 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQS-KSRLI 143
TGA ++I+VP P AA AI EALDA + L+VCITEGIP DM+ VK +++ ++L+
Sbjct: 63 ETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLV 122
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPG+I P + K+GIMPGHI +RG +G+VSRSGTLTYEA +Q T+ GLGQ+ VGIGG
Sbjct: 123 GPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGG 182
Query: 204 DPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAP 252
DP +G D +E+F KDPET+ I++IGEIGG KPV ++IAGITAP
Sbjct: 183 DPVHGLTHRDVIEMFNKDPETEAILMIGEIGGTEEEEAAEYIEKEVDKPVFAYIAGITAP 242
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306
PG+RMGHAGAII GGKG A+ K++ALEKAG V +PA++G + K +K + L
Sbjct: 243 PGKRMGHAGAIIMGGKGTAKAKMEALEKAGAYVIENPAKIGETVAKILKVIELE 296
>sp|P53598|SUCA_YEAST Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=LSC1 PE=1 SV=1
Length = 329
Score = 299 bits (766), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 200/306 (65%), Gaps = 19/306 (6%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y T NL L +KVI QGFTGKQGTFH+ + EYGT VVGG +P K G+THL PVF
Sbjct: 24 YDKTIKNLLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFA 83
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
+VK+A TGA A+ I+VPPP AA AI E+++AE+PL VCITEGIPQ DM+ + L Q
Sbjct: 84 SVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQ 143
Query: 138 SKSRLIGPNCPGIIAP-EQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQT 196
K+RL+GPNCPGII P + +IGI P I Q G +G++SRSGTLTYEAV QTT+ LGQ+
Sbjct: 144 DKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQS 203
Query: 197 LCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNAK---------------- 240
L +G+GGD F GT+FID L++FL+D T+GII++GEIGG +
Sbjct: 204 LVIGMGGDAFPGTDFIDALKLFLEDETTEGIIMLGEIGGKAEIEAAQFLKEYNFSRSKPM 263
Query: 241 PVVSFIAGITA--PPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298
PV SFIAG A G RMGH+GAI+ G A+ K AL GV V SP +G LL
Sbjct: 264 PVASFIAGTVAGQMKGVRMGHSGAIVEGSGTDAESKKQALRDVGVAVVESPGYLGQALLD 323
Query: 299 EMKRLN 304
+ +
Sbjct: 324 QFAKFK 329
>sp|P53595|MTKB_METEA Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2
Length = 296
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 198/293 (67%), Gaps = 14/293 (4%)
Query: 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
++ + K+ ++ QG TG +GTFH+K+ I YG+ VVGGV+PGKGGKTH +PVFNTVKEA
Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAV 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSR-- 141
+ATGA ++ +V PP AA AI EA DA + L+ IT+GIP DM++VK L R K +
Sbjct: 62 EATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRT 121
Query: 142 -LIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVG 200
++GPNC GII+P + +GIMPGHI+ G VGV+SRSGTL YEA Q ++G+G + VG
Sbjct: 122 MVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVG 181
Query: 201 IGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGI 249
IGGDP NG++F+D L +F +DPET+ +++IGEIGG A KPV+ F+AG+
Sbjct: 182 IGGDPINGSSFLDHLALFEQDPETEAVLMIGEIGGPQEAEASAWIKENFSKPVIGFVAGL 241
Query: 250 TAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
TAP GRRMGHAGAIIS A +K + + G+ V P G+ + + R
Sbjct: 242 TAPKGRRMGHAGAIISATGDSAAEKAEIMRSYGLTVAPDPGSFGSTVADVLAR 294
>sp|O28098|SUCD2_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD2 PE=3 SV=1
Length = 287
Score = 280 bits (717), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 200/284 (70%), Gaps = 12/284 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ ++KV+ QG TG QG FH+++ + YGTK+V GV+PGKGG L +PV+++VKEA
Sbjct: 5 VDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREA 64
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
A A+VI+VP P AA A+ EA DA + +IVCITEGIP D +K+ R ++++ + LIGPN
Sbjct: 65 DANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWR-VKEAGATLIGPN 123
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
CPGII+P + +GIMP I + G VG+VSRSGTLTY+ + T++GLGQ+ VGIGGD
Sbjct: 124 CPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRI 183
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGPN----------AKPVVSFIAGITAPPGRR 256
GT+F++ L +F D ETK ++L+GEIGG +KPVV ++AG+TAPPG+R
Sbjct: 184 IGTDFVEVLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIREMSKPVVGYVAGLTAPPGKR 243
Query: 257 MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300
MGHAGAII GG G A+ KI ALE AG V ++P ++ EL+ E+
Sbjct: 244 MGHAGAIIEGGVGTAESKIKALEAAGARVGKTPMEVA-ELVAEI 286
>sp|O28733|SUCD1_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD1 PE=3 SV=1
Length = 291
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/287 (49%), Positives = 197/287 (68%), Gaps = 15/287 (5%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ ++VI QG TG QG+F +K+ ++YGTKVVGGV+PGKGG +PV+NTV+EA T
Sbjct: 8 VDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAET 67
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
A+ ++IYVP A AI EA DA + L+VC+TEGIP D + + HR +R+ KS L+GPN
Sbjct: 68 NADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLI-HRKLREVKSMLLGPN 126
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
CPG+I+P + K+G++P +G +GVVSRSGTLTY+ T+ G+GQ+ VGIGGDP
Sbjct: 127 CPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGGDPM 186
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGPN----------AKPVVSFIAGITAPPGRR 256
G F+D L++F +D ETK ++L+GEIGG +KPVV+FIAG TAPPG+R
Sbjct: 187 PGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQMSKPVVAFIAGRTAPPGKR 246
Query: 257 MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
MGHAGAII G G A+ K+ AL AG V A+ +++KE++R+
Sbjct: 247 MGHAGAIIEGSTGTAEAKMAALRDAGARV----AETLLDVVKEVRRV 289
>sp|O26663|SUCD_METTH Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=sucD PE=3 SV=1
Length = 293
Score = 265 bits (677), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 185/286 (64%), Gaps = 12/286 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ L ++ + QG TGKQG+FH++Q +EYGT++V GV+PGKGG+ L + V+N+V+E +
Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTE 66
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
A++I+VP P A A E++ + L+V ITE IP D +++ R K+ +IG
Sbjct: 67 EMDVNASIIFVPAPFAKDAAFESIK-HLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIG 124
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PN PGII P K+GIMP HI G +G+VSRSGTLTYE Q T+ G GQ+ CVGIGGD
Sbjct: 125 PNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGD 184
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN----------AKPVVSFIAGITAPPG 254
P G F+D LE F DP T ++LIGEIGG +KPV +FI+G TAPPG
Sbjct: 185 PVTGLGFVDVLERFEDDPGTDAVVLIGEIGGDAEERAASYIEQMSKPVFAFISGATAPPG 244
Query: 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300
+RMGHAGAII GG G A K +ALE AG +V P+ + +E+ ++
Sbjct: 245 KRMGHAGAIIEGGTGTASSKREALEAAGAVVVDRPSAIVDEIRAQL 290
>sp|P53400|SUCA2_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1
Length = 309
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 159/297 (53%), Positives = 201/297 (67%), Gaps = 17/297 (5%)
Query: 22 RPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKE 81
+P L + ++V+ QG G QG +HS+ EYGTKVVG V P K GK LP+F +KE
Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKE 70
Query: 82 ARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSR 141
T A A++I+VP PGAA A EA +A M L+VCITE IPQ DM+KVK ++++++ +
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVK-KVMKETGCQ 129
Query: 142 LIGPNCPGIIAP-EQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVG 200
LIGPNCPG+I P K+GI+P +I + G +G+VSRSGTLTYEA + TTQ GLGQ+ VG
Sbjct: 130 LIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVG 189
Query: 201 IGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP--------------NAKPVVSFI 246
IGGDPF G D ++ F DP+T+GIILIGEIGG KPVV+FI
Sbjct: 190 IGGDPFAGQLHTDVIKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFI 249
Query: 247 AGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
AG TAPPG+RMGHAGAI+SGGKG A+ K ALE AGV + R P MG + +EMKRL
Sbjct: 250 AGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRL 306
>sp|P53401|SUCA3_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1
Length = 309
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 197/297 (66%), Gaps = 17/297 (5%)
Query: 22 RPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKE 81
+P L + +KV+ QG G QG FHS+ +YGTKVVG V P K G LP+F +KE
Sbjct: 12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKE 70
Query: 82 ARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSR 141
T A A++I+VP PGAA A EA A M L+VCITE IPQ DM+KVK ++++++ +
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVK-KVMKETGCQ 129
Query: 142 LIGPNCPGIIAP-EQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVG 200
LIGPNCPG+I P K+GI+P +I G +G+VSRSGTLTYEA + TT GLGQ+ VG
Sbjct: 130 LIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVG 189
Query: 201 IGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP--------------NAKPVVSFI 246
IGGDPF G D ++ F DP+T+GIILIGEIGG KPVV+FI
Sbjct: 190 IGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFI 249
Query: 247 AGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
AG TAPPG+RMGHAGAI+SGGKG A+ K ALE AGV + R P MG + +EMKR+
Sbjct: 250 AGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRM 306
>sp|P53399|SUCA1_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1
Length = 309
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/297 (52%), Positives = 197/297 (66%), Gaps = 17/297 (5%)
Query: 22 RPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKE 81
+P L + +KV+ QG G QG FHS+ +YGTKVVG V P K G LP+F +KE
Sbjct: 12 KPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKE 70
Query: 82 ARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSR 141
T A A++I+VP PGAA A EA +A M L+VCITE IPQ DM+KVK ++++++ +
Sbjct: 71 VVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVK-KVMKETGCQ 129
Query: 142 LIGPNCPGIIAP-EQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVG 200
LIGPNCPG+I P K+GI+P +I G +G+VSRSGTLTYEA + TT GLGQ+ VG
Sbjct: 130 LIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVG 189
Query: 201 IGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP--------------NAKPVVSFI 246
IGGDPF G D ++ F DP+T+GIILIGEIGG KPVV+ I
Sbjct: 190 IGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVASI 249
Query: 247 AGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
AG TAPPG+RMGHAGAI+SGGKG A+ K ALE AGV + R P MG + +EMKR+
Sbjct: 250 AGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRM 306
>sp|Q7U0Z0|SUCD_MYCBO Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=sucD PE=3
SV=1
Length = 303
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/304 (46%), Positives = 189/304 (62%), Gaps = 26/304 (8%)
Query: 21 TRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLD------ 72
T ++ L+ +KVI QG TG + T H+ + + GT++VGGV+ K G T H D
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLI 61
Query: 73 -LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKV- 130
LPVF +V EA + TGA+ ++I+VPP A AI EA+DAE+PL+V ITEGIP D
Sbjct: 62 KLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAW 121
Query: 131 KHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQ 190
+ L K+R+IGPNCPGII+P Q GI P +I G +G+VS+SGTLTY+ + +
Sbjct: 122 AYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFELRD 181
Query: 191 VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------A 239
LG + +GIGGDP GT ID +E F KDP+TK I++IGEIGG +
Sbjct: 182 --LGFSTAIGIGGDPVIGTTHIDAIEAFEKDPDTKLIVMIGEIGGDAEERAADFIKTNVS 239
Query: 240 KPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSP---AQMGNEL 296
KPVV ++AG TAP G+ MGHAGAI+SG G A K +ALE AGV V ++P A + E+
Sbjct: 240 KPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299
Query: 297 LKEM 300
L +
Sbjct: 300 LLSL 303
>sp|P71558|SUCD_MYCTU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
tuberculosis GN=sucD PE=3 SV=1
Length = 303
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/304 (46%), Positives = 189/304 (62%), Gaps = 26/304 (8%)
Query: 21 TRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLD------ 72
T ++ L+ +KVI QG TG + T H+ + + GT++VGGV+ K G T H D
Sbjct: 2 THMSIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLI 61
Query: 73 -LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKV- 130
LPVF +V EA + TGA+ ++I+VPP A AI EA+DAE+PL+V ITEGIP D
Sbjct: 62 KLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAW 121
Query: 131 KHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQ 190
+ L K+R+IGPNCPGII+P Q GI P +I G +G+VS+SGTLTY+ + +
Sbjct: 122 AYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFELRD 181
Query: 191 VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------A 239
LG + +GIGGDP GT ID +E F +DP+TK I++IGEIGG +
Sbjct: 182 --LGFSTAIGIGGDPVIGTTHIDAIEAFERDPDTKLIVMIGEIGGDAEERAADFIKTNVS 239
Query: 240 KPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSP---AQMGNEL 296
KPVV ++AG TAP G+ MGHAGAI+SG G A K +ALE AGV V ++P A + E+
Sbjct: 240 KPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299
Query: 297 LKEM 300
L +
Sbjct: 300 LLSL 303
>sp|Q58643|SUCD_METJA Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucD PE=1
SV=1
Length = 294
Score = 240 bits (613), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 136/274 (49%), Positives = 184/274 (67%), Gaps = 11/274 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ L +K I QG TG+QG+FH+K+ +E GTK+VGGV+PGKGG+ +PVF+TVKEA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
T A A+VI+VP P A A+ EA+DA + LIV ITE IP D ++ + ++IG
Sbjct: 68 ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYA-EDVGVKIIG 126
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PN PGI +P+ K+GI+P + + G VG+VSRSGTLTYE HQ + G G + CVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA----------KPVVSFIAGITAPPG 254
P G + + L++F KD ET+ I++IGEIGGG KPV+ +IAG +AP G
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEKMKKPVIGYIAGQSAPEG 246
Query: 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRS 288
+RMGHAGAI+ GKG A+ K+ ALE+AG V ++
Sbjct: 247 KRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKN 280
>sp|P09143|SUCD_THETH Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus
thermophilus GN=sucD PE=1 SV=1
Length = 288
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 194/286 (67%), Gaps = 13/286 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + +++V+ QG TG++G FH+KQ ++YGTK+V GV+PGKGG L +PV++TVKEA
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVA 61
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
+A++I+VP P AA A EA A +PLIV ITEGIP LDMV+ I+ SRLIG
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEE-IKALGSRLIG 120
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
NCPGII+ E+ KIGIMPGH+ +RG VG++SRSGTLTYEA +Q GLG T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAPP 253
P GT F D L +F +DPET+ ++LIGEIGG KPVV FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPK 240
Query: 254 GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299
G+RMGHAGAII G G + K+ A +AG+ V + ++ EL+K+
Sbjct: 241 GKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEI-VELVKK 285
>sp|Q54YA0|ACLY_DICDI Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly
PE=1 SV=1
Length = 622
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 26/270 (9%)
Query: 59 GGVSPGKGGKTHLDLPVFNTVKEA-RDATGAEATVIYVPPPGAAKAIHEAL-DAEMPLIV 116
GG+ G L +PV+N+V EA + A+ + + A ++ AL + + +V
Sbjct: 63 GGMYKAFFGFKELVIPVYNSVSEACQQCPNADVFLNFASHRSAYQSSLLALREPSIQTVV 122
Query: 117 CITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIG--------IMPGHIHQR 168
I EG+P+ + + + ++ +IGP G I KIG IM +++
Sbjct: 123 IIAEGVPE-NEARSLISIAKKLGKVIIGPATVGGIQAGCFKIGNTAGTIVYIMACKLYRS 181
Query: 169 GCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII 228
G VG VS+SG L+ E + ++ G + IGGD F G+ D + K PE + I+
Sbjct: 182 GSVGFVSKSGGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTLTDHALRYEKLPEVQMIV 241
Query: 229 LIGEIGG------------GPNAKPVVSFIAGITA---PPGRRMGHAGAIISGGKGGAQD 273
++GE+GG G KP+ ++++G A P + GHAGA G A
Sbjct: 242 ILGELGGWDEYGIVEALKKGEITKPICAWVSGTVAKIFPTEVQFGHAGAKSGGETESADA 301
Query: 274 KIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
K AL +AG +V S N + +L
Sbjct: 302 KNKALREAGAVVPTSFEDFSNVIAATYAKL 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,332,777
Number of Sequences: 539616
Number of extensions: 5852434
Number of successful extensions: 14298
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 14119
Number of HSP's gapped (non-prelim): 101
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)