Query psy8894
Match_columns 306
No_of_seqs 198 out of 1865
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 22:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05678 succinyl-CoA syntheta 100.0 2.8E-70 6E-75 508.9 32.5 280 23-303 1-291 (291)
2 TIGR01019 sucCoAalpha succinyl 100.0 2.3E-69 4.9E-74 501.7 32.0 273 26-299 2-285 (286)
3 PLN00125 Succinyl-CoA ligase [ 100.0 4.3E-69 9.4E-74 501.8 32.8 283 23-305 5-299 (300)
4 PTZ00187 succinyl-CoA syntheta 100.0 1.5E-68 3.3E-73 499.8 33.1 289 15-303 14-316 (317)
5 TIGR02717 AcCoA-syn-alpha acet 100.0 5.7E-64 1.2E-68 493.5 28.9 261 27-298 4-286 (447)
6 PLN02522 ATP citrate (pro-S)-l 100.0 2.9E-53 6.3E-58 425.0 32.4 275 25-304 5-318 (608)
7 COG0074 SucD Succinyl-CoA synt 100.0 1.1E-52 2.4E-57 380.8 29.4 280 23-303 1-292 (293)
8 KOG1255|consensus 100.0 5.7E-50 1.2E-54 353.9 26.2 299 7-305 12-328 (329)
9 COG1042 Acyl-CoA synthetase (N 100.0 1.2E-50 2.5E-55 407.4 21.5 262 26-299 6-291 (598)
10 PF13607 Succ_CoA_lig: Succiny 100.0 1.2E-39 2.6E-44 272.9 10.5 124 168-298 1-137 (138)
11 PRK06091 membrane protein FdrA 100.0 6.3E-38 1.4E-42 309.4 21.1 198 73-299 102-315 (555)
12 PF13380 CoA_binding_2: CoA bi 99.9 3.9E-24 8.5E-29 174.2 11.4 113 31-153 1-116 (116)
13 COG1832 Predicted CoA-binding 99.9 1.1E-21 2.4E-26 161.2 7.4 129 17-153 3-134 (140)
14 KOG1254|consensus 99.7 4.6E-16 9.9E-21 150.1 14.2 231 72-303 54-309 (600)
15 PF02629 CoA_binding: CoA bind 99.6 1E-15 2.2E-20 120.4 10.3 93 28-121 1-96 (96)
16 PF01113 DapB_N: Dihydrodipico 99.4 3.5E-13 7.6E-18 110.9 8.7 111 31-146 1-123 (124)
17 COG2344 AT-rich DNA-binding pr 99.4 2E-13 4.4E-18 118.2 7.1 98 24-122 78-181 (211)
18 TIGR00036 dapB dihydrodipicoli 99.3 2.2E-11 4.8E-16 112.7 12.4 119 31-153 2-134 (266)
19 COG0289 DapB Dihydrodipicolina 99.3 2.5E-11 5.4E-16 110.8 11.6 119 30-153 2-133 (266)
20 PLN02775 Probable dihydrodipic 99.3 3.7E-11 8E-16 111.6 12.4 119 30-153 11-143 (286)
21 PRK00048 dihydrodipicolinate r 99.2 2.5E-10 5.4E-15 105.2 11.4 119 30-153 1-124 (257)
22 TIGR02130 dapB_plant dihydrodi 99.1 5.3E-10 1.2E-14 103.4 11.8 116 32-153 2-132 (275)
23 PF01408 GFO_IDH_MocA: Oxidore 98.9 6.7E-09 1.4E-13 83.7 10.1 108 32-142 2-116 (120)
24 PRK13303 L-aspartate dehydroge 98.8 3.4E-08 7.3E-13 91.5 10.6 119 31-153 2-128 (265)
25 PF00549 Ligase_CoA: CoA-ligas 98.7 1.1E-07 2.4E-12 81.1 9.5 110 174-298 1-152 (153)
26 PRK05472 redox-sensing transcr 98.7 8.8E-08 1.9E-12 85.8 8.5 95 25-120 79-179 (213)
27 PRK13304 L-aspartate dehydroge 98.6 1.9E-07 4.1E-12 86.5 10.1 111 31-145 2-119 (265)
28 PRK11579 putative oxidoreducta 98.6 3.8E-07 8.2E-12 87.2 11.5 111 29-142 3-118 (346)
29 PRK13302 putative L-aspartate 98.5 8.1E-07 1.8E-11 82.6 10.2 116 30-151 6-129 (271)
30 TIGR01921 DAP-DH diaminopimela 98.4 1.4E-06 2.9E-11 82.8 9.6 120 30-152 3-127 (324)
31 COG0673 MviM Predicted dehydro 98.4 2.1E-06 4.7E-11 81.0 10.6 114 29-146 2-126 (342)
32 TIGR01761 thiaz-red thiazoliny 98.3 5.2E-06 1.1E-10 79.7 10.4 108 29-143 2-119 (343)
33 PRK10206 putative oxidoreducta 98.2 6.7E-06 1.4E-10 78.8 10.5 110 31-143 2-119 (344)
34 TIGR02717 AcCoA-syn-alpha acet 98.1 0.00017 3.6E-09 71.8 18.0 242 28-300 148-444 (447)
35 PRK05479 ketol-acid reductoiso 98.0 1.5E-05 3.2E-10 76.1 8.1 126 18-151 6-136 (330)
36 PRK13301 putative L-aspartate 98.0 3E-05 6.5E-10 71.6 9.2 114 30-146 2-121 (267)
37 COG1712 Predicted dinucleotide 98.0 5.9E-05 1.3E-09 67.8 10.1 118 32-152 2-126 (255)
38 PF07991 IlvN: Acetohydroxy ac 97.9 4.6E-05 9.9E-10 65.4 7.5 117 29-152 3-124 (165)
39 TIGR00465 ilvC ketol-acid redu 97.8 5.6E-05 1.2E-09 71.8 8.3 114 30-150 3-121 (314)
40 PF03446 NAD_binding_2: NAD bi 97.8 6.2E-05 1.3E-09 64.4 7.1 108 31-143 2-116 (163)
41 COG0059 IlvC Ketol-acid reduct 97.8 5.8E-05 1.3E-09 70.6 7.2 122 24-152 12-138 (338)
42 PRK13403 ketol-acid reductoiso 97.8 7.5E-05 1.6E-09 70.9 8.0 127 18-152 5-135 (335)
43 PRK07634 pyrroline-5-carboxyla 97.8 0.00016 3.5E-09 65.4 10.0 114 29-148 3-125 (245)
44 TIGR03855 NAD_NadX aspartate d 97.8 0.00012 2.7E-09 66.4 9.1 97 54-152 1-103 (229)
45 PRK00436 argC N-acetyl-gamma-g 97.8 9.4E-05 2E-09 71.0 8.7 92 31-124 3-104 (343)
46 PLN02819 lysine-ketoglutarate 97.8 0.00016 3.4E-09 78.2 10.7 120 27-154 566-708 (1042)
47 PRK04207 glyceraldehyde-3-phos 97.7 0.00011 2.5E-09 70.4 8.1 86 31-121 2-110 (341)
48 PRK06349 homoserine dehydrogen 97.7 0.00019 4.1E-09 71.0 9.6 111 30-143 3-127 (426)
49 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00014 2.9E-09 68.2 7.8 88 31-120 2-96 (285)
50 PF10727 Rossmann-like: Rossma 97.6 0.00015 3.2E-09 60.1 6.8 93 30-126 10-110 (127)
51 PRK06270 homoserine dehydrogen 97.6 0.0003 6.4E-09 67.6 9.8 111 30-143 2-148 (341)
52 PF01118 Semialdhyde_dh: Semia 97.6 0.00014 3.1E-09 59.1 6.1 88 32-123 1-101 (121)
53 PRK08300 acetaldehyde dehydrog 97.5 0.00026 5.5E-09 66.8 7.7 91 29-121 3-103 (302)
54 PF03807 F420_oxidored: NADP o 97.5 0.0003 6.5E-09 54.3 6.5 73 32-107 1-81 (96)
55 KOG2741|consensus 97.4 0.001 2.2E-08 63.3 10.3 113 28-143 4-127 (351)
56 PRK14618 NAD(P)H-dependent gly 97.4 0.00051 1.1E-08 65.2 8.3 90 30-125 4-110 (328)
57 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00055 1.2E-08 58.3 7.6 113 32-147 1-135 (157)
58 PF03447 NAD_binding_3: Homose 97.4 9E-05 2E-09 59.7 2.5 105 37-143 1-115 (117)
59 PRK09599 6-phosphogluconate de 97.4 0.00092 2E-08 62.8 9.7 115 32-150 2-124 (301)
60 PTZ00431 pyrroline carboxylate 97.4 0.0012 2.5E-08 60.9 10.0 93 31-129 4-100 (260)
61 TIGR00872 gnd_rel 6-phosphoglu 97.4 0.00095 2.1E-08 62.7 9.5 110 32-145 2-117 (298)
62 PRK11880 pyrroline-5-carboxyla 97.4 0.00076 1.7E-08 61.9 8.6 92 31-126 3-101 (267)
63 PRK12490 6-phosphogluconate de 97.3 0.0013 2.9E-08 61.8 9.8 109 32-143 2-116 (299)
64 PRK00094 gpsA NAD(P)H-dependen 97.3 0.00089 1.9E-08 62.9 8.3 91 31-125 2-111 (325)
65 PRK11559 garR tartronate semia 97.3 0.002 4.4E-08 60.0 10.4 109 31-144 3-119 (296)
66 PRK06928 pyrroline-5-carboxyla 97.3 0.0016 3.6E-08 60.5 9.6 95 31-129 2-108 (277)
67 COG0240 GpsA Glycerol-3-phosph 97.2 0.0026 5.7E-08 60.5 10.6 113 30-147 1-137 (329)
68 PRK07680 late competence prote 97.2 0.0017 3.7E-08 60.1 8.9 92 32-126 2-103 (273)
69 PLN02256 arogenate dehydrogena 97.2 0.0015 3.3E-08 61.7 8.5 76 29-107 35-112 (304)
70 PRK08374 homoserine dehydrogen 97.2 0.003 6.5E-08 60.6 10.3 121 30-153 2-155 (336)
71 PLN02688 pyrroline-5-carboxyla 97.2 0.0023 5.1E-08 58.6 9.3 94 31-128 1-104 (266)
72 PRK07679 pyrroline-5-carboxyla 97.2 0.0029 6.3E-08 58.7 9.9 95 31-129 4-109 (279)
73 TIGR01505 tartro_sem_red 2-hyd 97.1 0.003 6.6E-08 58.8 9.7 109 32-145 1-117 (291)
74 TIGR01850 argC N-acetyl-gamma- 97.1 0.0018 4E-08 62.3 8.1 92 31-125 1-105 (346)
75 PRK12491 pyrroline-5-carboxyla 97.0 0.0032 6.9E-08 58.6 8.9 112 31-148 3-123 (272)
76 PRK12439 NAD(P)H-dependent gly 97.0 0.0023 5E-08 61.3 8.2 94 29-125 6-117 (341)
77 PRK14619 NAD(P)H-dependent gly 97.0 0.0058 1.2E-07 57.6 10.3 83 29-125 3-88 (308)
78 PRK06476 pyrroline-5-carboxyla 97.0 0.0033 7.2E-08 57.6 8.4 95 32-129 2-103 (258)
79 PTZ00345 glycerol-3-phosphate 97.0 0.0051 1.1E-07 59.7 10.0 96 27-125 8-135 (365)
80 PLN02712 arogenate dehydrogena 97.0 0.0031 6.8E-08 65.8 9.0 80 26-108 48-129 (667)
81 PLN02712 arogenate dehydrogena 96.9 0.0044 9.6E-08 64.6 9.4 78 29-109 368-447 (667)
82 PLN02968 Probable N-acetyl-gam 96.9 0.0058 1.3E-07 59.6 9.4 93 28-123 36-138 (381)
83 PRK15059 tartronate semialdehy 96.9 0.005 1.1E-07 57.8 8.6 107 32-144 2-116 (292)
84 PF13460 NAD_binding_10: NADH( 96.8 0.002 4.4E-08 55.1 5.4 86 33-120 1-98 (183)
85 PRK11863 N-acetyl-gamma-glutam 96.8 0.0043 9.4E-08 58.9 8.1 83 30-123 2-85 (313)
86 PRK08655 prephenate dehydrogen 96.8 0.006 1.3E-07 60.6 9.3 77 31-110 1-81 (437)
87 COG1748 LYS9 Saccharopine dehy 96.8 0.011 2.3E-07 57.8 10.6 113 31-152 2-131 (389)
88 PRK15461 NADH-dependent gamma- 96.8 0.0086 1.9E-07 56.2 9.7 113 31-149 2-124 (296)
89 TIGR01692 HIBADH 3-hydroxyisob 96.8 0.0082 1.8E-07 56.0 9.5 180 35-221 1-204 (288)
90 COG0345 ProC Pyrroline-5-carbo 96.8 0.005 1.1E-07 57.2 7.8 115 31-153 2-125 (266)
91 PRK00696 sucC succinyl-CoA syn 96.8 0.015 3.2E-07 56.7 11.5 110 167-297 255-382 (388)
92 TIGR03570 NeuD_NnaD sugar O-ac 96.8 0.0092 2E-07 51.6 9.1 84 32-116 1-88 (201)
93 TIGR01016 sucCoAbeta succinyl- 96.8 0.011 2.3E-07 57.7 10.3 111 166-297 254-382 (386)
94 PRK05671 aspartate-semialdehyd 96.7 0.0043 9.4E-08 59.5 7.3 92 28-123 2-101 (336)
95 PRK06728 aspartate-semialdehyd 96.7 0.0069 1.5E-07 58.4 8.6 117 28-149 3-134 (347)
96 TIGR03376 glycerol3P_DH glycer 96.7 0.02 4.4E-07 55.1 11.5 113 32-148 1-150 (342)
97 PTZ00142 6-phosphogluconate de 96.7 0.011 2.4E-07 59.2 10.0 115 31-149 2-129 (470)
98 TIGR01546 GAPDH-II_archae glyc 96.7 0.0052 1.1E-07 58.9 7.2 82 33-117 1-105 (333)
99 PRK06598 aspartate-semialdehyd 96.6 0.0089 1.9E-07 58.0 8.8 114 31-150 2-138 (369)
100 PRK08664 aspartate-semialdehyd 96.6 0.0078 1.7E-07 57.9 8.1 90 30-123 3-111 (349)
101 PRK08507 prephenate dehydrogen 96.6 0.011 2.3E-07 54.8 8.7 90 32-126 2-96 (275)
102 COG0002 ArgC Acetylglutamate s 96.6 0.01 2.2E-07 56.7 8.7 90 30-123 2-105 (349)
103 PRK06091 membrane protein FdrA 96.6 0.95 2.1E-05 46.2 22.8 239 29-301 192-494 (555)
104 TIGR03026 NDP-sugDHase nucleot 96.6 0.016 3.5E-07 56.9 10.2 95 32-130 2-130 (411)
105 TIGR02853 spore_dpaA dipicolin 96.6 0.0084 1.8E-07 56.2 7.8 113 30-154 151-271 (287)
106 PRK06444 prephenate dehydrogen 96.6 0.0054 1.2E-07 54.5 6.2 52 31-108 1-52 (197)
107 TIGR03025 EPS_sugtrans exopoly 96.5 0.01 2.2E-07 58.7 8.8 88 29-117 124-221 (445)
108 TIGR00873 gnd 6-phosphoglucona 96.5 0.012 2.7E-07 58.9 9.3 114 32-149 1-126 (467)
109 TIGR01851 argC_other N-acetyl- 96.5 0.0099 2.1E-07 56.3 8.1 82 31-123 2-84 (310)
110 PRK14620 NAD(P)H-dependent gly 96.5 0.018 3.8E-07 54.6 9.9 90 32-124 2-111 (326)
111 CHL00194 ycf39 Ycf39; Provisio 96.5 0.078 1.7E-06 49.8 14.2 88 31-120 1-110 (317)
112 TIGR03023 WcaJ_sugtrans Undeca 96.5 0.012 2.7E-07 58.3 9.1 89 30-122 128-227 (451)
113 PLN02350 phosphogluconate dehy 96.5 0.017 3.7E-07 58.2 10.0 116 31-150 7-136 (493)
114 PRK07417 arogenate dehydrogena 96.5 0.0079 1.7E-07 55.9 7.1 88 32-123 2-94 (279)
115 PRK11199 tyrA bifunctional cho 96.4 0.036 7.8E-07 53.9 11.6 79 29-121 97-175 (374)
116 PRK06545 prephenate dehydrogen 96.4 0.017 3.6E-07 55.8 9.2 110 31-145 1-118 (359)
117 PF05368 NmrA: NmrA-like famil 96.4 0.011 2.5E-07 52.7 7.5 86 33-119 1-101 (233)
118 PRK08040 putative semialdehyde 96.4 0.013 2.7E-07 56.3 8.1 91 29-123 3-101 (336)
119 PRK07502 cyclohexadienyl dehyd 96.4 0.015 3.2E-07 54.7 8.4 89 31-122 7-102 (307)
120 COG2084 MmsB 3-hydroxyisobutyr 96.4 0.046 9.9E-07 51.3 11.5 120 31-155 1-130 (286)
121 PLN02545 3-hydroxybutyryl-CoA 96.4 0.0057 1.2E-07 57.1 5.5 94 30-128 4-128 (295)
122 TIGR01915 npdG NADPH-dependent 96.4 0.012 2.6E-07 52.7 7.3 91 31-124 1-106 (219)
123 PRK05225 ketol-acid reductoiso 96.4 0.0043 9.4E-08 61.5 4.8 118 28-152 34-160 (487)
124 PRK08818 prephenate dehydrogen 96.3 0.036 7.8E-07 53.9 11.0 70 30-110 4-74 (370)
125 PRK06392 homoserine dehydrogen 96.3 0.029 6.4E-07 53.6 10.2 114 32-149 2-145 (326)
126 PRK06436 glycerate dehydrogena 96.3 0.029 6.4E-07 53.1 9.9 64 29-99 121-185 (303)
127 PRK06130 3-hydroxybutyryl-CoA 96.3 0.01 2.3E-07 55.7 6.8 94 28-125 2-121 (311)
128 COG0136 Asd Aspartate-semialde 96.2 0.032 6.9E-07 53.3 9.7 115 31-148 2-134 (334)
129 TIGR01745 asd_gamma aspartate- 96.2 0.022 4.7E-07 55.3 8.6 118 31-150 1-137 (366)
130 PLN02383 aspartate semialdehyd 96.2 0.026 5.5E-07 54.4 9.0 94 26-123 3-104 (344)
131 PRK14874 aspartate-semialdehyd 96.2 0.022 4.7E-07 54.6 8.4 90 31-122 2-97 (334)
132 PRK14046 malate--CoA ligase su 96.2 0.037 8E-07 54.2 10.1 112 167-300 255-382 (392)
133 TIGR01532 E4PD_g-proteo D-eryt 96.2 0.021 4.6E-07 54.5 8.2 85 32-117 1-119 (325)
134 TIGR00978 asd_EA aspartate-sem 96.1 0.019 4.1E-07 55.1 7.8 91 31-123 1-108 (341)
135 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0079 1.7E-07 56.0 5.0 94 31-128 2-126 (288)
136 PLN03139 formate dehydrogenase 96.1 0.048 1E-06 53.4 10.5 72 29-104 198-273 (386)
137 PRK15204 undecaprenyl-phosphat 96.1 0.028 6E-07 56.4 9.1 90 30-122 146-244 (476)
138 smart00846 Gp_dh_N Glyceraldeh 96.1 0.032 7E-07 47.3 8.1 86 31-117 1-117 (149)
139 TIGR03022 WbaP_sugtrans Undeca 96.1 0.025 5.3E-07 56.2 8.5 90 30-122 125-225 (456)
140 PRK07574 formate dehydrogenase 96.1 0.052 1.1E-06 53.1 10.5 71 30-104 192-266 (385)
141 PRK08605 D-lactate dehydrogena 96.0 0.031 6.8E-07 53.4 8.6 91 29-123 145-240 (332)
142 PRK00257 erythronate-4-phospha 96.0 0.034 7.4E-07 54.3 8.9 64 29-98 115-178 (381)
143 TIGR03649 ergot_EASG ergot alk 96.0 0.036 7.8E-07 50.9 8.5 89 32-120 1-105 (285)
144 PRK10124 putative UDP-glucose 96.0 0.031 6.8E-07 55.9 8.6 85 30-117 143-236 (463)
145 PLN02695 GDP-D-mannose-3',5'-e 95.9 0.1 2.3E-06 50.3 11.8 93 25-120 16-137 (370)
146 PRK06522 2-dehydropantoate 2-r 95.8 0.039 8.5E-07 51.2 8.2 90 31-125 1-106 (304)
147 PF02826 2-Hacid_dh_C: D-isome 95.8 0.0082 1.8E-07 52.1 3.4 65 28-97 34-101 (178)
148 COG1086 Predicted nucleoside-d 95.8 0.035 7.6E-07 56.3 8.0 88 29-117 115-210 (588)
149 PF03435 Saccharop_dh: Sacchar 95.8 0.023 4.9E-07 55.1 6.6 81 33-116 1-96 (386)
150 PF13727 CoA_binding_3: CoA-bi 95.8 0.022 4.9E-07 47.9 5.8 87 29-116 76-173 (175)
151 COG0111 SerA Phosphoglycerate 95.7 0.018 3.9E-07 55.0 5.7 71 30-104 142-215 (324)
152 PRK15438 erythronate-4-phospha 95.7 0.021 4.6E-07 55.6 6.3 64 29-98 115-178 (378)
153 PRK15469 ghrA bifunctional gly 95.7 0.081 1.8E-06 50.2 9.9 70 29-104 135-208 (312)
154 PRK05808 3-hydroxybutyryl-CoA 95.7 0.021 4.6E-07 53.0 5.8 92 31-127 4-126 (282)
155 TIGR01296 asd_B aspartate-semi 95.7 0.026 5.7E-07 54.2 6.5 87 32-122 1-95 (339)
156 PLN02858 fructose-bisphosphate 95.6 0.067 1.4E-06 60.2 10.5 117 29-151 323-451 (1378)
157 PRK14806 bifunctional cyclohex 95.6 0.054 1.2E-06 57.0 9.2 109 31-143 4-119 (735)
158 PRK13243 glyoxylate reductase; 95.5 0.084 1.8E-06 50.5 9.5 71 29-104 149-222 (333)
159 PRK12480 D-lactate dehydrogena 95.5 0.084 1.8E-06 50.5 9.5 66 29-99 145-210 (330)
160 PRK07531 bifunctional 3-hydrox 95.5 0.045 9.7E-07 55.2 8.0 93 31-127 5-124 (495)
161 PRK06932 glycerate dehydrogena 95.5 0.075 1.6E-06 50.5 8.8 85 29-121 146-233 (314)
162 COG2910 Putative NADH-flavin r 95.5 0.1 2.2E-06 46.0 8.8 65 31-98 1-73 (211)
163 PRK07530 3-hydroxybutyryl-CoA 95.4 0.027 5.8E-07 52.5 5.6 92 29-125 3-125 (292)
164 cd01065 NAD_bind_Shikimate_DH 95.4 0.024 5.3E-07 47.2 4.8 108 29-144 18-137 (155)
165 KOG2380|consensus 95.4 0.023 4.9E-07 54.4 5.0 121 24-146 46-173 (480)
166 PRK08410 2-hydroxyacid dehydro 95.4 0.088 1.9E-06 49.9 9.1 86 29-121 144-232 (311)
167 TIGR01327 PGDH D-3-phosphoglyc 95.4 0.065 1.4E-06 54.5 8.5 71 30-104 138-211 (525)
168 COG0287 TyrA Prephenate dehydr 95.4 0.094 2E-06 49.1 8.9 85 30-117 3-95 (279)
169 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.16 3.5E-06 50.1 10.7 92 30-123 3-122 (415)
170 PLN00016 RNA-binding protein; 95.3 0.11 2.3E-06 50.2 9.3 91 30-120 52-165 (378)
171 PRK12921 2-dehydropantoate 2-r 95.2 0.14 3.1E-06 47.6 9.7 90 31-124 1-107 (305)
172 TIGR03013 EpsB_2 sugar transfe 95.2 0.066 1.4E-06 53.1 7.7 86 30-116 124-218 (442)
173 PF00044 Gp_dh_N: Glyceraldehy 95.1 0.044 9.6E-07 46.7 5.4 85 32-117 2-118 (151)
174 PRK11790 D-3-phosphoglycerate 95.0 0.17 3.8E-06 49.8 10.1 71 29-104 150-221 (409)
175 cd01075 NAD_bind_Leu_Phe_Val_D 95.0 0.13 2.9E-06 45.5 8.4 114 29-153 27-149 (200)
176 COG4693 PchG Oxidoreductase (N 95.0 0.075 1.6E-06 49.6 6.9 108 28-143 2-120 (361)
177 PLN00124 succinyl-CoA ligase [ 95.0 0.16 3.5E-06 50.3 9.7 108 167-295 290-415 (422)
178 PRK08306 dipicolinate synthase 95.0 0.081 1.7E-06 49.8 7.3 114 29-153 151-271 (296)
179 PLN00141 Tic62-NAD(P)-related 94.9 0.24 5.2E-06 44.7 10.1 91 30-120 17-132 (251)
180 PLN02858 fructose-bisphosphate 94.9 0.16 3.5E-06 57.2 10.5 109 29-143 3-122 (1378)
181 PRK08955 glyceraldehyde-3-phos 94.8 0.14 3E-06 49.2 8.6 86 30-117 2-118 (334)
182 COG1810 Uncharacterized protei 94.7 0.28 6.2E-06 44.1 9.6 145 31-184 2-162 (224)
183 PF02593 dTMP_synthase: Thymid 94.6 0.29 6.2E-06 44.2 9.4 110 39-153 5-117 (217)
184 PLN02657 3,8-divinyl protochlo 94.5 0.22 4.8E-06 48.5 9.4 95 26-120 56-182 (390)
185 PRK05447 1-deoxy-D-xylulose 5- 94.5 0.19 4.1E-06 49.1 8.6 111 31-143 2-145 (385)
186 PRK06249 2-dehydropantoate 2-r 94.5 0.26 5.7E-06 46.4 9.5 93 30-126 5-113 (313)
187 TIGR01181 dTDP_gluc_dehyt dTDP 94.4 1.3 2.7E-05 40.7 13.8 30 32-62 1-32 (317)
188 PRK11150 rfaD ADP-L-glycero-D- 94.4 1.2 2.6E-05 41.2 13.7 31 33-63 2-32 (308)
189 PRK08229 2-dehydropantoate 2-r 94.4 0.26 5.6E-06 46.8 9.4 90 31-125 3-113 (341)
190 PF04321 RmlD_sub_bind: RmlD s 94.4 0.031 6.7E-07 52.1 2.9 83 31-120 1-101 (286)
191 PRK06129 3-hydroxyacyl-CoA deh 94.3 0.093 2E-06 49.4 6.0 76 31-110 3-107 (308)
192 cd05211 NAD_bind_Glu_Leu_Phe_V 94.3 0.31 6.7E-06 43.9 9.0 115 29-152 22-159 (217)
193 COG2085 Predicted dinucleotide 94.2 0.27 5.9E-06 44.1 8.3 83 30-117 1-90 (211)
194 PRK13581 D-3-phosphoglycerate 94.1 0.15 3.2E-06 51.9 7.5 71 29-104 139-212 (526)
195 PRK06035 3-hydroxyacyl-CoA deh 94.1 0.074 1.6E-06 49.6 4.9 91 31-126 4-128 (291)
196 PRK08293 3-hydroxybutyryl-CoA 94.1 0.091 2E-06 48.9 5.4 91 31-125 4-126 (287)
197 PLN03209 translocon at the inn 94.1 0.19 4.2E-06 51.5 8.1 96 24-120 74-208 (576)
198 PF10087 DUF2325: Uncharacteri 94.1 0.62 1.4E-05 36.2 9.3 88 32-129 1-91 (97)
199 PRK06487 glycerate dehydrogena 94.0 0.34 7.3E-06 46.1 9.2 84 29-121 147-233 (317)
200 COG1023 Gnd Predicted 6-phosph 94.0 0.34 7.3E-06 44.5 8.6 118 32-152 2-125 (300)
201 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.9 0.13 2.7E-06 52.2 6.4 114 27-145 2-146 (503)
202 PRK13535 erythrose 4-phosphate 93.9 0.19 4E-06 48.4 7.2 89 31-122 2-125 (336)
203 KOG1203|consensus 93.8 0.29 6.3E-06 48.2 8.5 40 25-64 74-113 (411)
204 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.38 8.3E-06 42.1 8.5 89 31-122 1-122 (185)
205 PLN02928 oxidoreductase family 93.8 0.12 2.5E-06 49.9 5.6 64 29-97 158-236 (347)
206 COG0045 SucC Succinyl-CoA synt 93.7 0.59 1.3E-05 45.4 10.2 110 167-297 254-381 (387)
207 COG0057 GapA Glyceraldehyde-3- 93.6 0.31 6.7E-06 46.5 7.9 90 31-121 2-124 (335)
208 PF02558 ApbA: Ketopantoate re 93.5 0.19 4.1E-06 41.7 5.8 91 33-126 1-108 (151)
209 PF00899 ThiF: ThiF family; I 93.5 0.3 6.5E-06 40.1 6.9 115 30-149 2-127 (135)
210 PLN02696 1-deoxy-D-xylulose-5- 93.5 0.62 1.3E-05 46.4 10.1 115 25-143 52-203 (454)
211 PRK05865 hypothetical protein; 93.4 0.64 1.4E-05 50.0 10.9 89 31-122 1-105 (854)
212 PRK15409 bifunctional glyoxyla 93.4 0.49 1.1E-05 45.1 9.2 87 29-121 144-236 (323)
213 PLN02358 glyceraldehyde-3-phos 93.4 0.39 8.5E-06 46.2 8.5 87 30-117 5-125 (338)
214 PRK15181 Vi polysaccharide bio 93.4 0.44 9.6E-06 45.3 8.9 93 26-120 11-141 (348)
215 PRK07066 3-hydroxybutyryl-CoA 93.3 0.15 3.3E-06 48.6 5.5 67 30-100 7-96 (321)
216 COG1052 LdhA Lactate dehydroge 93.2 0.59 1.3E-05 44.7 9.4 88 28-121 144-236 (324)
217 PRK06813 homoserine dehydrogen 93.2 0.67 1.5E-05 44.7 9.8 114 31-149 3-151 (346)
218 cd05213 NAD_bind_Glutamyl_tRNA 93.2 0.19 4.2E-06 47.5 6.1 79 29-110 177-261 (311)
219 smart00859 Semialdhyde_dh Semi 93.2 0.39 8.5E-06 38.6 7.1 75 32-107 1-85 (122)
220 TIGR00715 precor6x_red precorr 93.1 0.34 7.4E-06 44.8 7.4 85 31-116 1-97 (256)
221 KOG0409|consensus 93.1 0.58 1.2E-05 44.2 8.8 196 26-230 31-252 (327)
222 PRK09414 glutamate dehydrogena 93.0 0.79 1.7E-05 45.7 10.1 116 29-153 231-377 (445)
223 PRK09287 6-phosphogluconate de 92.9 0.85 1.8E-05 45.7 10.4 105 42-149 1-117 (459)
224 PLN02725 GDP-4-keto-6-deoxyman 92.7 0.52 1.1E-05 43.3 8.0 82 34-120 1-101 (306)
225 COG4569 MhpF Acetaldehyde dehy 92.7 0.42 9.1E-06 42.8 6.9 91 28-120 2-103 (310)
226 PRK12557 H(2)-dependent methyl 92.7 0.86 1.9E-05 43.9 9.7 76 47-125 36-121 (342)
227 PRK15182 Vi polysaccharide bio 92.6 0.63 1.4E-05 46.1 9.0 65 29-98 5-87 (425)
228 PRK08328 hypothetical protein; 92.5 0.96 2.1E-05 41.0 9.4 117 30-151 27-155 (231)
229 PRK12475 thiamine/molybdopteri 92.5 1.1 2.3E-05 43.2 10.1 115 30-149 24-151 (338)
230 COG3268 Uncharacterized conser 92.5 0.55 1.2E-05 45.0 7.8 120 28-152 4-136 (382)
231 cd05313 NAD_bind_2_Glu_DH NAD( 92.5 0.61 1.3E-05 43.1 8.0 118 29-153 37-187 (254)
232 TIGR03466 HpnA hopanoid-associ 92.4 0.81 1.8E-05 42.3 9.1 88 31-120 1-113 (328)
233 PRK08268 3-hydroxy-acyl-CoA de 92.4 0.27 5.7E-06 49.9 6.0 93 29-126 6-129 (507)
234 cd01492 Aos1_SUMO Ubiquitin ac 92.2 0.85 1.8E-05 40.3 8.4 117 30-152 21-148 (197)
235 PRK10675 UDP-galactose-4-epime 92.2 0.94 2E-05 42.4 9.2 90 31-120 1-124 (338)
236 PLN02214 cinnamoyl-CoA reducta 92.1 0.96 2.1E-05 43.0 9.3 90 29-120 9-127 (342)
237 PLN02240 UDP-glucose 4-epimera 92.0 1.2 2.6E-05 42.0 9.7 91 30-120 5-132 (352)
238 TIGR01214 rmlD dTDP-4-dehydror 91.9 0.65 1.4E-05 42.3 7.7 82 32-120 1-100 (287)
239 TIGR02356 adenyl_thiF thiazole 91.9 1 2.2E-05 39.9 8.5 115 30-149 21-146 (202)
240 PRK07819 3-hydroxybutyryl-CoA 91.8 0.28 6E-06 45.9 5.1 93 30-127 5-129 (286)
241 PLN02260 probable rhamnose bio 91.7 4 8.6E-05 42.5 14.0 92 29-120 5-132 (668)
242 PRK12320 hypothetical protein; 91.7 1.2 2.6E-05 46.9 10.1 86 32-121 2-103 (699)
243 PLN03096 glyceraldehyde-3-phos 91.7 0.59 1.3E-05 45.9 7.3 85 31-117 61-180 (395)
244 PRK10217 dTDP-glucose 4,6-dehy 91.6 5.9 0.00013 37.3 14.0 32 31-62 2-33 (355)
245 TIGR01777 yfcH conserved hypot 91.5 1.2 2.5E-05 40.5 8.8 85 33-120 1-111 (292)
246 COG2185 Sbm Methylmalonyl-CoA 91.5 1.4 3.1E-05 37.2 8.4 88 44-147 30-124 (143)
247 PLN02650 dihydroflavonol-4-red 91.4 3.8 8.2E-05 38.8 12.5 32 29-60 4-35 (351)
248 PF01488 Shikimate_DH: Shikima 91.3 0.19 4.1E-06 41.6 3.0 79 29-111 11-98 (135)
249 PRK08223 hypothetical protein; 91.3 1.6 3.4E-05 41.1 9.5 185 30-220 27-239 (287)
250 TIGR01724 hmd_rel H2-forming N 91.1 2.8 6.1E-05 40.2 11.0 78 47-127 36-123 (341)
251 cd01483 E1_enzyme_family Super 91.1 2.6 5.6E-05 34.7 9.7 115 32-151 1-126 (143)
252 PRK06718 precorrin-2 dehydroge 91.0 0.89 1.9E-05 40.4 7.3 35 29-65 9-43 (202)
253 TIGR01179 galE UDP-glucose-4-e 91.0 1.3 2.8E-05 40.7 8.8 89 32-120 1-121 (328)
254 PRK08618 ornithine cyclodeamin 90.9 0.33 7.2E-06 46.2 4.7 84 29-117 126-220 (325)
255 PLN02686 cinnamoyl-CoA reducta 90.8 14 0.00031 35.5 16.0 35 28-62 51-85 (367)
256 COG1893 ApbA Ketopantoate redu 90.7 4.7 0.0001 38.1 12.3 93 31-126 1-108 (307)
257 KOG2711|consensus 90.6 0.85 1.8E-05 43.8 7.0 248 28-283 19-337 (372)
258 PLN02306 hydroxypyruvate reduc 90.4 0.51 1.1E-05 46.2 5.6 84 29-116 164-268 (386)
259 TIGR00640 acid_CoA_mut_C methy 90.4 1.6 3.5E-05 36.2 7.8 90 43-147 18-114 (132)
260 TIGR02622 CDP_4_6_dhtase CDP-g 90.3 2.1 4.6E-05 40.5 9.6 90 30-120 4-127 (349)
261 PRK07688 thiamine/molybdopteri 90.2 2 4.3E-05 41.3 9.4 115 30-149 24-151 (339)
262 cd01485 E1-1_like Ubiquitin ac 90.2 1.8 3.8E-05 38.3 8.4 118 30-152 19-151 (198)
263 PRK06719 precorrin-2 dehydroge 90.2 0.64 1.4E-05 39.6 5.4 35 29-65 12-46 (157)
264 PRK10084 dTDP-glucose 4,6 dehy 90.2 12 0.00027 35.1 14.8 32 31-62 1-32 (352)
265 PRK09987 dTDP-4-dehydrorhamnos 90.1 0.91 2E-05 42.3 6.8 85 31-120 1-104 (299)
266 cd00757 ThiF_MoeB_HesA_family 90.0 2.4 5.2E-05 38.1 9.3 115 30-149 21-146 (228)
267 PRK05690 molybdopterin biosynt 89.9 2.4 5.2E-05 38.8 9.3 115 29-148 31-156 (245)
268 PRK15057 UDP-glucose 6-dehydro 89.9 1.3 2.8E-05 43.3 8.0 62 32-98 2-84 (388)
269 KOG1502|consensus 89.9 1.7 3.7E-05 41.6 8.4 89 29-120 5-128 (327)
270 PF02737 3HCDH_N: 3-hydroxyacy 89.8 0.14 3E-06 44.6 1.0 90 32-126 1-121 (180)
271 PTZ00023 glyceraldehyde-3-phos 89.8 1.5 3.3E-05 42.2 8.1 88 31-120 3-122 (337)
272 COG0460 ThrA Homoserine dehydr 89.8 3.6 7.9E-05 39.5 10.6 110 29-143 2-136 (333)
273 PF00289 CPSase_L_chain: Carba 89.7 1.6 3.4E-05 35.1 6.9 98 31-146 3-106 (110)
274 TIGR00936 ahcY adenosylhomocys 89.4 1.6 3.5E-05 43.0 8.2 71 28-102 193-265 (406)
275 COG0569 TrkA K+ transport syst 89.3 1.5 3.2E-05 39.6 7.3 84 31-117 1-98 (225)
276 TIGR01501 MthylAspMutase methy 89.1 3.8 8.2E-05 34.2 9.1 94 42-147 16-119 (134)
277 PRK05597 molybdopterin biosynt 89.1 2.7 5.8E-05 40.6 9.4 117 29-150 27-154 (355)
278 PRK06179 short chain dehydroge 89.1 2.3 5E-05 38.4 8.6 30 29-58 3-32 (270)
279 PTZ00325 malate dehydrogenase; 89.1 3 6.5E-05 39.8 9.6 95 24-122 2-127 (321)
280 PRK06046 alanine dehydrogenase 89.0 0.63 1.4E-05 44.3 4.9 84 28-117 127-222 (326)
281 PRK08306 dipicolinate synthase 89.0 6.7 0.00014 36.9 11.8 149 30-193 2-176 (296)
282 PRK00683 murD UDP-N-acetylmura 88.9 0.98 2.1E-05 44.3 6.4 77 31-113 4-85 (418)
283 PLN02662 cinnamyl-alcohol dehy 88.9 3 6.4E-05 38.6 9.3 32 30-61 4-35 (322)
284 COG1087 GalE UDP-glucose 4-epi 88.9 5 0.00011 38.2 10.6 111 31-143 1-165 (329)
285 cd00755 YgdL_like Family of ac 88.8 8.5 0.00018 35.0 11.9 156 30-202 11-182 (231)
286 PTZ00079 NADP-specific glutama 88.7 5 0.00011 40.2 11.0 119 29-153 236-386 (454)
287 PTZ00082 L-lactate dehydrogena 88.6 4.4 9.6E-05 38.6 10.4 88 29-121 5-129 (321)
288 PLN02583 cinnamoyl-CoA reducta 88.5 3.1 6.8E-05 38.5 9.2 32 30-61 6-37 (297)
289 TIGR02355 moeB molybdopterin s 88.5 3.1 6.7E-05 37.9 8.9 115 30-149 24-149 (240)
290 cd02072 Glm_B12_BD B12 binding 88.5 3.9 8.5E-05 33.9 8.6 94 42-147 14-117 (128)
291 cd01491 Ube1_repeat1 Ubiquitin 88.4 3 6.6E-05 39.2 8.9 115 30-153 19-144 (286)
292 cd01076 NAD_bind_1_Glu_DH NAD( 88.4 2.3 4.9E-05 38.5 7.9 115 29-152 30-168 (227)
293 PLN02166 dTDP-glucose 4,6-dehy 88.2 1.6 3.5E-05 43.3 7.4 37 25-61 114-151 (436)
294 PLN02653 GDP-mannose 4,6-dehyd 88.2 8.8 0.00019 36.0 12.2 31 30-60 6-36 (340)
295 PLN02272 glyceraldehyde-3-phos 88.1 2.3 4.9E-05 42.2 8.1 86 31-117 86-204 (421)
296 cd01080 NAD_bind_m-THF_DH_Cycl 88.1 1.1 2.4E-05 38.7 5.5 56 29-99 43-99 (168)
297 PRK14106 murD UDP-N-acetylmura 88.1 1.2 2.6E-05 43.9 6.4 81 29-113 4-94 (450)
298 COG0565 LasT rRNA methylase [T 87.9 5.9 0.00013 36.3 10.2 62 31-95 5-80 (242)
299 PF01370 Epimerase: NAD depend 87.9 1.6 3.4E-05 38.2 6.4 32 33-64 1-32 (236)
300 PLN02494 adenosylhomocysteinas 87.9 2 4.3E-05 43.2 7.7 97 29-130 253-352 (477)
301 PRK07729 glyceraldehyde-3-phos 87.8 2.8 6E-05 40.5 8.4 86 31-117 3-119 (343)
302 PLN02235 ATP citrate (pro-S)-l 87.8 4.3 9.4E-05 40.2 9.9 117 167-300 268-416 (423)
303 PTZ00075 Adenosylhomocysteinas 87.7 2 4.4E-05 43.1 7.7 88 29-122 253-343 (476)
304 cd02071 MM_CoA_mut_B12_BD meth 87.7 5.1 0.00011 32.4 8.8 86 49-148 22-112 (122)
305 PLN02896 cinnamyl-alcohol dehy 87.6 3.2 6.8E-05 39.4 8.8 33 29-61 9-41 (353)
306 PRK05086 malate dehydrogenase; 87.5 8.7 0.00019 36.4 11.6 89 31-122 1-120 (312)
307 KOG4039|consensus 87.5 5.1 0.00011 35.4 9.0 91 29-120 17-131 (238)
308 PRK00676 hemA glutamyl-tRNA re 87.3 1.1 2.4E-05 43.1 5.4 57 29-94 173-233 (338)
309 PLN02986 cinnamyl-alcohol dehy 87.3 5 0.00011 37.3 9.8 33 30-62 5-37 (322)
310 PRK08057 cobalt-precorrin-6x r 87.3 2.7 5.9E-05 38.6 7.8 86 30-116 2-97 (248)
311 PRK15425 gapA glyceraldehyde-3 87.2 3.1 6.7E-05 40.0 8.3 86 31-117 3-119 (331)
312 PRK05708 2-dehydropantoate 2-r 87.2 3.3 7.1E-05 39.0 8.5 92 31-126 3-111 (305)
313 PRK14194 bifunctional 5,10-met 87.2 2 4.3E-05 40.7 6.9 57 30-100 159-215 (301)
314 PRK14031 glutamate dehydrogena 87.1 5.1 0.00011 40.0 10.1 117 29-153 227-376 (444)
315 PLN02735 carbamoyl-phosphate s 87.0 5.3 0.00011 44.4 11.1 123 12-152 5-141 (1102)
316 KOG0069|consensus 87.0 4.7 0.0001 38.8 9.4 94 18-117 150-250 (336)
317 PTZ00434 cytosolic glyceraldeh 86.9 2.5 5.5E-05 41.0 7.6 86 31-117 4-134 (361)
318 PRK07878 molybdopterin biosynt 86.9 4 8.8E-05 39.9 9.3 117 29-150 41-168 (392)
319 COG1042 Acyl-CoA synthetase (N 86.8 0.73 1.6E-05 47.6 4.1 178 69-264 306-492 (598)
320 COG3804 Uncharacterized conser 86.8 4.5 9.8E-05 38.1 8.8 108 31-145 3-130 (350)
321 TIGR01470 cysG_Nterm siroheme 86.7 1.9 4.1E-05 38.4 6.2 34 30-65 9-42 (205)
322 PF00208 ELFV_dehydrog: Glutam 86.6 1.2 2.6E-05 40.9 5.0 115 29-152 31-179 (244)
323 PRK05600 thiamine biosynthesis 86.5 3.3 7.2E-05 40.3 8.3 114 29-147 40-164 (370)
324 PRK07403 glyceraldehyde-3-phos 86.5 2.2 4.8E-05 41.0 6.9 199 31-233 2-280 (337)
325 COG0794 GutQ Predicted sugar p 86.5 6.5 0.00014 35.1 9.4 102 24-147 33-140 (202)
326 PRK09466 metL bifunctional asp 86.4 5.4 0.00012 42.9 10.5 116 29-149 457-604 (810)
327 PRK08644 thiamine biosynthesis 86.3 2.9 6.4E-05 37.3 7.3 36 29-65 27-62 (212)
328 PRK14030 glutamate dehydrogena 86.2 5.7 0.00012 39.7 9.8 118 29-153 227-377 (445)
329 KOG2018|consensus 86.0 2.9 6.2E-05 39.9 7.2 89 30-122 74-199 (430)
330 PTZ00117 malate dehydrogenase; 85.9 7.3 0.00016 37.0 10.2 88 29-121 4-123 (319)
331 PF02670 DXP_reductoisom: 1-de 85.9 1.9 4E-05 35.8 5.4 28 33-60 1-30 (129)
332 COG0451 WcaG Nucleoside-diphos 85.9 4.6 9.9E-05 36.9 8.7 29 32-60 2-30 (314)
333 KOG2733|consensus 85.7 1.5 3.3E-05 42.4 5.3 111 30-144 5-142 (423)
334 TIGR02853 spore_dpaA dipicolin 85.7 9.1 0.0002 35.9 10.6 149 31-193 2-175 (287)
335 PRK08762 molybdopterin biosynt 85.4 3.1 6.6E-05 40.4 7.5 116 29-149 134-260 (376)
336 PRK14851 hypothetical protein; 85.4 6.4 0.00014 41.5 10.2 114 30-146 43-167 (679)
337 TIGR00243 Dxr 1-deoxy-D-xylulo 85.2 5.5 0.00012 39.0 9.0 109 31-143 2-147 (389)
338 PRK15116 sulfur acceptor prote 85.2 7 0.00015 36.4 9.4 111 29-143 29-150 (268)
339 PRK05476 S-adenosyl-L-homocyst 85.2 3.3 7.1E-05 41.2 7.6 117 29-154 211-331 (425)
340 PRK00421 murC UDP-N-acetylmura 85.1 3.1 6.7E-05 41.4 7.5 80 27-113 4-92 (461)
341 COG0300 DltE Short-chain dehyd 85.0 2.1 4.6E-05 39.8 5.8 87 28-123 4-95 (265)
342 COG4091 Predicted homoserine d 84.9 5.6 0.00012 38.6 8.7 91 26-117 13-132 (438)
343 PRK00045 hemA glutamyl-tRNA re 84.9 1 2.2E-05 44.5 4.0 37 28-65 180-216 (423)
344 COG1091 RfbD dTDP-4-dehydrorha 84.8 2.7 5.9E-05 39.4 6.5 81 32-120 2-100 (281)
345 PRK10538 malonic semialdehyde 84.7 4.3 9.3E-05 36.2 7.7 32 31-63 1-32 (248)
346 PRK06901 aspartate-semialdehyd 84.6 2.6 5.7E-05 40.3 6.4 90 30-123 3-99 (322)
347 PRK06395 phosphoribosylamine-- 84.5 2.8 6.1E-05 41.6 6.9 81 30-113 2-91 (435)
348 PLN02427 UDP-apiose/xylose syn 84.5 5.2 0.00011 38.4 8.6 33 28-60 12-45 (386)
349 cd07018 S49_SppA_67K_type Sign 84.4 0.85 1.8E-05 41.0 2.9 75 210-285 33-133 (222)
350 PRK04148 hypothetical protein; 84.4 2.3 4.9E-05 35.5 5.2 84 29-116 16-107 (134)
351 PRK12815 carB carbamoyl phosph 84.4 2.5 5.4E-05 46.8 7.0 36 29-65 6-51 (1068)
352 PRK09436 thrA bifunctional asp 84.4 6.1 0.00013 42.6 9.8 110 29-143 464-604 (819)
353 PRK01710 murD UDP-N-acetylmura 84.4 3.3 7.2E-05 41.2 7.4 79 30-113 14-103 (458)
354 PF01073 3Beta_HSD: 3-beta hyd 84.2 4.3 9.3E-05 37.7 7.6 81 34-117 1-113 (280)
355 PLN02989 cinnamyl-alcohol dehy 84.2 7.2 0.00016 36.3 9.2 36 28-63 3-39 (325)
356 PRK08177 short chain dehydroge 84.0 3.7 8E-05 36.0 6.8 79 31-122 2-81 (225)
357 PLN00203 glutamyl-tRNA reducta 84.0 0.71 1.5E-05 47.0 2.5 76 30-108 266-353 (519)
358 PRK08289 glyceraldehyde-3-phos 83.9 3.9 8.5E-05 41.0 7.5 92 28-120 125-260 (477)
359 cd01338 MDH_choloroplast_like 83.8 8.3 0.00018 36.8 9.5 88 29-119 1-127 (322)
360 KOG2774|consensus 83.8 31 0.00067 32.0 12.5 193 27-234 41-259 (366)
361 PF13241 NAD_binding_7: Putati 83.6 1.6 3.4E-05 34.3 3.8 78 29-113 6-87 (103)
362 PRK03369 murD UDP-N-acetylmura 83.5 11 0.00024 37.9 10.8 80 29-113 11-96 (488)
363 PRK08628 short chain dehydroge 83.5 2 4.3E-05 38.5 4.9 83 30-122 7-93 (258)
364 PLN02477 glutamate dehydrogena 83.3 10 0.00022 37.5 10.2 34 29-63 205-238 (410)
365 PRK09496 trkA potassium transp 83.3 4.5 9.8E-05 39.7 7.8 86 31-119 1-99 (453)
366 TIGR02371 ala_DH_arch alanine 83.3 2 4.3E-05 40.9 5.1 84 29-117 127-221 (325)
367 COG1184 GCD2 Translation initi 83.2 11 0.00024 35.7 9.9 106 87-197 119-226 (301)
368 TIGR01472 gmd GDP-mannose 4,6- 83.2 7.9 0.00017 36.4 9.2 30 31-60 1-30 (343)
369 PRK10433 putative RNA methyltr 83.2 17 0.00038 33.0 10.9 62 31-95 3-78 (228)
370 PTZ00353 glycosomal glyceralde 83.0 5.5 0.00012 38.5 7.9 32 31-63 3-35 (342)
371 PRK07411 hypothetical protein; 82.8 8.8 0.00019 37.6 9.5 35 30-65 38-72 (390)
372 TIGR02964 xanthine_xdhC xanthi 82.8 24 0.00053 32.3 11.9 91 28-120 98-196 (246)
373 PRK13940 glutamyl-tRNA reducta 82.6 1.5 3.2E-05 43.4 4.0 67 29-98 180-253 (414)
374 PRK09291 short chain dehydroge 82.6 8.7 0.00019 34.1 8.8 30 31-60 3-32 (257)
375 PRK02472 murD UDP-N-acetylmura 82.6 14 0.0003 36.3 10.9 82 30-114 5-95 (447)
376 TIGR03589 PseB UDP-N-acetylglu 82.5 6 0.00013 37.2 8.0 89 30-121 4-126 (324)
377 PLN02778 3,5-epimerase/4-reduc 82.5 6.3 0.00014 36.7 8.1 79 30-117 9-108 (298)
378 PRK09496 trkA potassium transp 82.4 7.2 0.00016 38.2 8.8 112 29-149 230-354 (453)
379 KOG0023|consensus 82.2 12 0.00027 35.9 9.7 99 24-140 176-274 (360)
380 COG1064 AdhP Zn-dependent alco 82.2 3.4 7.3E-05 39.8 6.1 35 25-60 162-196 (339)
381 cd01487 E1_ThiF_like E1_ThiF_l 82.1 7 0.00015 33.7 7.6 33 32-65 1-33 (174)
382 COG0771 MurD UDP-N-acetylmuram 81.9 22 0.00047 35.7 11.9 111 30-147 7-145 (448)
383 COG0373 HemA Glutamyl-tRNA red 81.9 1.9 4E-05 42.7 4.3 80 29-111 177-265 (414)
384 PLN02206 UDP-glucuronate decar 81.8 6.7 0.00015 39.0 8.4 33 29-61 118-150 (442)
385 cd01484 E1-2_like Ubiquitin ac 81.7 6.7 0.00015 35.7 7.7 33 32-65 1-33 (234)
386 PLN02572 UDP-sulfoquinovose sy 81.5 7.2 0.00016 38.7 8.5 30 30-59 47-76 (442)
387 cd05311 NAD_bind_2_malic_enz N 81.5 8.7 0.00019 34.6 8.3 106 30-145 25-149 (226)
388 PLN00106 malate dehydrogenase 81.4 26 0.00057 33.4 11.9 96 26-124 14-139 (323)
389 PRK06182 short chain dehydroge 81.3 9.3 0.0002 34.5 8.6 80 30-123 3-85 (273)
390 PRK14188 bifunctional 5,10-met 81.2 4.5 9.9E-05 38.2 6.6 58 29-100 157-214 (296)
391 TIGR01746 Thioester-redct thio 80.9 5.5 0.00012 37.1 7.1 31 32-62 1-33 (367)
392 PRK12549 shikimate 5-dehydroge 80.8 1.9 4.2E-05 40.3 3.9 67 29-98 126-203 (284)
393 PF10100 DUF2338: Uncharacteri 80.7 6 0.00013 39.0 7.2 91 32-126 27-125 (429)
394 cd06361 PBP1_GPC6A_like Ligand 80.7 6.7 0.00015 38.3 7.9 94 29-123 171-270 (403)
395 PF07085 DRTGG: DRTGG domain; 80.4 8.1 0.00018 30.2 6.9 83 54-144 7-90 (105)
396 TIGR01763 MalateDH_bact malate 80.3 10 0.00023 35.7 8.8 85 31-120 2-118 (305)
397 PRK14852 hypothetical protein; 80.2 11 0.00024 41.2 9.8 117 30-149 332-459 (989)
398 cd07014 S49_SppA Signal peptid 80.2 2.8 6E-05 36.1 4.5 42 210-251 26-83 (177)
399 PRK03803 murD UDP-N-acetylmura 80.1 5.9 0.00013 39.1 7.3 81 26-113 2-94 (448)
400 cd07022 S49_Sppa_36K_type Sign 80.1 3 6.5E-05 37.2 4.7 42 209-250 28-84 (214)
401 PRK14179 bifunctional 5,10-met 80.0 6.7 0.00014 36.9 7.2 75 30-123 158-232 (284)
402 PRK08462 biotin carboxylase; V 80.0 13 0.00029 36.6 9.8 104 30-152 4-114 (445)
403 PRK11908 NAD-dependent epimera 79.9 5 0.00011 37.9 6.5 30 31-60 2-32 (347)
404 PRK04308 murD UDP-N-acetylmura 79.9 4.5 9.7E-05 39.9 6.4 78 30-113 5-93 (445)
405 cd07019 S49_SppA_1 Signal pept 79.8 2.6 5.7E-05 37.5 4.3 42 210-251 25-82 (211)
406 PRK12828 short chain dehydroge 79.8 11 0.00023 32.8 8.2 83 30-122 7-92 (239)
407 PF00670 AdoHcyase_NAD: S-aden 79.6 2.5 5.4E-05 36.5 3.9 87 29-123 22-112 (162)
408 PF02254 TrkA_N: TrkA-N domain 79.4 12 0.00026 29.2 7.6 82 33-117 1-94 (116)
409 PRK07340 ornithine cyclodeamin 79.2 0.94 2E-05 42.8 1.3 83 29-116 124-215 (304)
410 cd00401 AdoHcyase S-adenosyl-L 79.1 4.7 0.0001 39.9 6.1 80 29-112 201-283 (413)
411 PRK09186 flagellin modificatio 79.1 6.2 0.00013 35.0 6.6 86 29-119 3-91 (256)
412 PRK02261 methylaspartate mutas 79.1 24 0.00052 29.3 9.6 88 48-147 25-121 (137)
413 COG1179 Dinucleotide-utilizing 79.1 10 0.00022 35.0 7.8 86 30-117 30-152 (263)
414 TIGR01202 bchC 2-desacetyl-2-h 79.0 5.9 0.00013 36.9 6.6 82 29-113 144-226 (308)
415 PRK06141 ornithine cyclodeamin 79.0 3.1 6.7E-05 39.4 4.7 79 29-112 124-213 (314)
416 TIGR02992 ectoine_eutC ectoine 79.0 3.4 7.3E-05 39.4 5.0 81 29-114 128-220 (326)
417 PF02153 PDH: Prephenate dehyd 79.0 6.6 0.00014 36.0 6.8 72 48-122 3-81 (258)
418 TIGR01035 hemA glutamyl-tRNA r 79.0 3.4 7.3E-05 40.8 5.2 37 28-65 178-214 (417)
419 PF02844 GARS_N: Phosphoribosy 78.9 1.1 2.3E-05 35.6 1.3 47 96-146 47-93 (100)
420 TIGR01759 MalateDH-SF1 malate 78.9 16 0.00036 34.8 9.7 88 29-120 2-129 (323)
421 TIGR02197 heptose_epim ADP-L-g 78.9 13 0.00027 34.1 8.7 86 33-120 1-114 (314)
422 TIGR00514 accC acetyl-CoA carb 78.7 12 0.00025 37.1 8.9 99 30-147 2-107 (449)
423 cd01339 LDH-like_MDH L-lactate 78.7 15 0.00032 34.3 9.2 84 33-121 1-116 (300)
424 PRK08291 ectoine utilization p 78.7 2.6 5.6E-05 40.2 4.1 80 29-113 131-222 (330)
425 TIGR00507 aroE shikimate 5-deh 78.6 6.2 0.00013 36.3 6.5 107 29-144 116-235 (270)
426 cd07023 S49_Sppa_N_C Signal pe 78.5 3.8 8.3E-05 36.2 4.9 42 210-251 21-78 (208)
427 COG0362 Gnd 6-phosphogluconate 78.4 15 0.00033 36.3 9.2 114 31-149 4-130 (473)
428 cd00419 Ferrochelatase_C Ferro 78.3 8.1 0.00018 32.0 6.5 52 97-148 76-134 (135)
429 cd01493 APPBP1_RUB Ubiquitin a 78.2 18 0.00039 36.0 9.9 119 30-153 20-151 (425)
430 PRK00141 murD UDP-N-acetylmura 78.1 4.5 9.7E-05 40.5 5.8 77 30-113 15-100 (473)
431 PF07755 DUF1611: Protein of u 78.0 4.3 9.4E-05 38.5 5.3 219 61-305 1-287 (301)
432 PRK04690 murD UDP-N-acetylmura 77.9 8 0.00017 38.7 7.5 32 30-63 8-39 (468)
433 PRK06223 malate dehydrogenase; 77.8 15 0.00033 34.3 9.0 85 31-120 3-119 (307)
434 PRK06463 fabG 3-ketoacyl-(acyl 77.5 16 0.00035 32.5 8.8 80 30-122 7-89 (255)
435 TIGR00112 proC pyrroline-5-car 77.5 7.5 0.00016 35.3 6.6 56 72-129 30-87 (245)
436 COG1086 Predicted nucleoside-d 77.4 6.8 0.00015 40.2 6.8 97 25-121 245-377 (588)
437 TIGR00705 SppA_67K signal pept 77.4 2.6 5.6E-05 43.6 3.9 69 167-251 306-390 (584)
438 PRK05693 short chain dehydroge 77.3 13 0.00027 33.7 8.1 78 31-122 2-82 (274)
439 COG0151 PurD Phosphoribosylami 77.3 17 0.00036 36.1 9.2 83 31-114 1-90 (428)
440 PRK03659 glutathione-regulated 77.2 5.1 0.00011 41.5 6.1 81 30-113 400-491 (601)
441 PRK12827 short chain dehydroge 77.2 6.5 0.00014 34.5 6.0 88 30-123 6-98 (249)
442 TIGR01534 GAPDH-I glyceraldehy 77.1 11 0.00023 36.3 7.7 85 32-117 1-120 (327)
443 cd00394 Clp_protease_like Case 76.9 3.3 7.1E-05 34.8 3.8 40 211-250 16-68 (161)
444 PF03720 UDPG_MGDP_dh_C: UDP-g 76.9 3.7 8.1E-05 32.3 3.9 66 34-102 1-81 (106)
445 PF02571 CbiJ: Precorrin-6x re 76.8 6.8 0.00015 36.0 6.2 85 31-117 1-99 (249)
446 PRK01438 murD UDP-N-acetylmura 76.7 4.9 0.00011 40.0 5.6 78 30-112 16-103 (480)
447 cd05291 HicDH_like L-2-hydroxy 76.6 13 0.00028 34.9 8.2 85 31-120 1-117 (306)
448 PRK05993 short chain dehydroge 76.6 12 0.00027 34.0 7.9 79 30-122 4-86 (277)
449 TIGR00705 SppA_67K signal pept 76.6 3.2 7E-05 42.8 4.4 75 210-285 80-181 (584)
450 PF13607 Succ_CoA_lig: Succiny 76.5 5.5 0.00012 33.3 5.0 107 30-142 1-124 (138)
451 PRK08591 acetyl-CoA carboxylas 76.4 17 0.00037 35.8 9.3 31 31-63 3-33 (451)
452 PLN02260 probable rhamnose bio 76.4 9.3 0.0002 39.8 7.8 82 29-120 379-481 (668)
453 PRK07985 oxidoreductase; Provi 76.3 9 0.00019 35.4 7.0 86 29-122 48-138 (294)
454 PLN02700 homoserine dehydrogen 76.3 11 0.00023 37.0 7.6 28 87-114 109-136 (377)
455 PF04273 DUF442: Putative phos 76.1 4.3 9.3E-05 32.6 4.1 95 94-189 10-107 (110)
456 PRK10669 putative cation:proto 76.1 8.3 0.00018 39.4 7.2 68 31-101 418-495 (558)
457 PRK06153 hypothetical protein; 76.1 21 0.00046 35.1 9.6 36 29-65 175-210 (393)
458 PRK05586 biotin carboxylase; V 75.9 15 0.00032 36.4 8.8 101 30-150 2-110 (447)
459 PRK08264 short chain dehydroge 75.6 15 0.00034 32.1 8.1 34 29-63 5-39 (238)
460 COG1004 Ugd Predicted UDP-gluc 75.5 49 0.0011 32.7 11.8 175 31-220 1-210 (414)
461 PRK00258 aroE shikimate 5-dehy 75.4 4.9 0.00011 37.3 4.9 108 29-144 122-242 (278)
462 cd01994 Alpha_ANH_like_IV This 75.1 58 0.0013 28.6 11.6 105 35-146 3-121 (194)
463 PLN02237 glyceraldehyde-3-phos 74.8 14 0.00031 36.8 8.1 86 31-119 76-196 (442)
464 KOG2250|consensus 74.8 35 0.00076 34.4 10.8 100 29-131 250-378 (514)
465 PRK06398 aldose dehydrogenase; 74.8 15 0.00033 33.0 7.9 74 30-122 6-82 (258)
466 cd06533 Glyco_transf_WecG_TagA 74.8 14 0.0003 31.8 7.2 87 24-116 40-128 (171)
467 cd06267 PBP1_LacI_sugar_bindin 74.7 48 0.001 28.7 10.9 62 169-232 117-186 (264)
468 cd01391 Periplasmic_Binding_Pr 74.6 53 0.0011 27.9 13.0 63 168-232 124-191 (269)
469 COG1171 IlvA Threonine dehydra 74.5 87 0.0019 30.4 16.6 203 75-303 60-278 (347)
470 TIGR03026 NDP-sugDHase nucleot 74.3 8.3 0.00018 37.8 6.4 70 29-101 312-390 (411)
471 PRK06172 short chain dehydroge 74.3 7.8 0.00017 34.4 5.8 86 29-122 6-94 (253)
472 PRK10949 protease 4; Provision 74.3 3.6 7.8E-05 42.8 4.0 100 167-284 324-451 (618)
473 PRK06196 oxidoreductase; Provi 74.1 9.5 0.00021 35.5 6.6 82 29-122 25-109 (315)
474 TIGR01369 CPSaseII_lrg carbamo 74.1 11 0.00024 41.6 8.0 86 28-114 552-656 (1050)
475 cd06342 PBP1_ABC_LIVBP_like Ty 74.1 33 0.00071 31.5 10.2 91 30-127 135-230 (334)
476 PRK05442 malate dehydrogenase; 74.0 26 0.00056 33.5 9.5 26 27-52 1-26 (326)
477 PRK06841 short chain dehydroge 73.9 13 0.00029 32.9 7.2 83 29-122 14-99 (255)
478 PRK09310 aroDE bifunctional 3- 73.7 8.7 0.00019 38.7 6.5 102 29-143 331-436 (477)
479 PRK06057 short chain dehydroge 73.6 14 0.0003 33.0 7.3 80 30-122 7-89 (255)
480 PRK07877 hypothetical protein; 73.3 15 0.00032 39.1 8.3 114 30-151 107-234 (722)
481 CHL00200 trpA tryptophan synth 73.2 32 0.0007 31.9 9.7 111 33-147 20-155 (263)
482 PRK06200 2,3-dihydroxy-2,3-dih 72.9 18 0.00038 32.4 7.9 83 29-122 5-90 (263)
483 PRK12815 carB carbamoyl phosph 72.8 13 0.00029 41.1 8.2 84 29-113 554-656 (1068)
484 COG2403 Predicted GTPase [Gene 72.7 75 0.0016 31.4 12.1 93 26-119 2-116 (449)
485 cd01078 NAD_bind_H4MPT_DH NADP 72.5 8.6 0.00019 33.3 5.5 35 29-64 27-61 (194)
486 TIGR01369 CPSaseII_lrg carbamo 72.5 33 0.00072 38.1 11.1 108 28-152 4-124 (1050)
487 PRK06079 enoyl-(acyl carrier p 72.4 14 0.00031 33.1 7.1 83 29-122 6-93 (252)
488 KOG2653|consensus 72.4 14 0.00031 36.0 7.2 117 30-150 6-134 (487)
489 PRK05784 phosphoribosylamine-- 72.4 27 0.00058 35.3 9.6 29 31-60 1-31 (486)
490 cd01336 MDH_cytoplasmic_cytoso 72.2 9.5 0.0002 36.4 6.1 25 29-53 1-25 (325)
491 KOG4354|consensus 72.2 20 0.00043 33.2 7.7 91 27-117 16-116 (340)
492 TIGR01087 murD UDP-N-acetylmur 72.1 11 0.00024 37.0 6.7 75 32-113 1-88 (433)
493 PRK05294 carB carbamoyl phosph 72.1 28 0.0006 38.7 10.5 107 29-151 6-124 (1066)
494 TIGR01809 Shik-DH-AROM shikima 72.0 7.2 0.00016 36.3 5.2 70 29-99 124-202 (282)
495 COG0743 Dxr 1-deoxy-D-xylulose 72.0 23 0.00051 34.5 8.6 139 30-180 1-175 (385)
496 PRK12743 oxidoreductase; Provi 72.0 9.3 0.0002 34.2 5.8 86 30-122 2-90 (256)
497 PRK12744 short chain dehydroge 71.9 11 0.00023 33.7 6.2 87 30-122 8-99 (257)
498 PRK08125 bifunctional UDP-gluc 71.8 16 0.00034 38.2 8.1 90 28-120 313-432 (660)
499 PRK06953 short chain dehydroge 71.6 18 0.00038 31.6 7.4 78 31-122 2-80 (222)
500 PRK08267 short chain dehydroge 71.6 11 0.00023 33.8 6.0 79 31-122 2-87 (260)
No 1
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=2.8e-70 Score=508.94 Aligned_cols=280 Identities=66% Similarity=1.110 Sum_probs=252.4
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.+++++.++|.|.|.+++.|....++|+++||+.++||||+..++++.|+|||++++|+|+..+||++++++|++.+++
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 35688999999999999999999999999999998889999932389999999999999998424899999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
++++|.++|+|.++|+|+||++++.+++ .++|+++|+|++||||+|++||......++++..+.+|+||+|||||+++.
T Consensus 81 ~l~e~~~~gvk~avI~s~Gf~~~~~~~l-~~~a~~~girvlGPNc~Gi~~~~~~~~~~~~~~~~~~G~valiSQSGal~~ 159 (291)
T PRK05678 81 AILEAIDAGIDLIVCITEGIPVLDMLEV-KAYLERKKTRLIGPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTY 159 (291)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCCEEECCCCCcccccccceeeecCCCCCCCCCEEEEeccHHHHH
Confidence 9999999999999999999987654444 468999999999999999999987655555544567999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~ 251 (306)
++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ .+++||||+||+|||+
T Consensus 160 ~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 160 EAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 99999999999999999999995556999999999999999999999999875 2358999999999998
Q ss_pred CCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 252 PPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 252 ~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
+.|+++||||||++++.|++.+|+++|+|+|+++++|++||+++++++|++|
T Consensus 240 ~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 240 PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred CCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 4577789999998666689999999999999999999999999999999876
No 2
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=2.3e-69 Score=501.71 Aligned_cols=273 Identities=67% Similarity=1.109 Sum_probs=248.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++++.++|.|.|.+|+.|..+.++|..+||+++++|||+..++++.|+|||+|++|+|++.+||++++++|++.++++++
T Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~ 81 (286)
T TIGR01019 2 LLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIF 81 (286)
T ss_pred eecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHH
Confidence 67889999999999999999999999999999999999955589999999999999998534899999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHHH
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAV 185 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~ 185 (306)
+|.++|+|.++++|+||+|.+.+++ .++|+++|+|++||||+|++||....+.++++..+.+|+||+|||||+++.+++
T Consensus 82 e~~~~Gvk~avIis~Gf~e~~~~~l-~~~a~~~girilGPNc~Giin~~~~~~~~~~~~~~~~G~ValiSQSG~l~~~~~ 160 (286)
T TIGR01019 82 EAIDAGIELIVCITEGIPVHDMLKV-KRYMEESGTRLIGPNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAV 160 (286)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCCEEECCCCceEEcccccceeeccccCCCCCcEEEEeccHHHHHHHH
Confidence 9999999999999999998754444 468999999999999999999987655555555567999999999999999999
Q ss_pred HHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCCC
Q psy8894 186 HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPG 254 (306)
Q Consensus 186 ~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g 254 (306)
+|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|+||+|+++ ..++||||+||+|||++.|
T Consensus 161 ~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~~~KPVV~lk~Grs~~~g 240 (286)
T TIGR01019 161 HQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMSKPVVGFIAGATAPPG 240 (286)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhcCCCCEEEEEecCCCCcc
Confidence 99999999999999999995556999999999999999999999999875 2278999999999997447
Q ss_pred CCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q psy8894 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299 (306)
Q Consensus 255 ~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~ 299 (306)
+++||||||+++..|++++|+++|+|+|+++++|++||+|.++..
T Consensus 241 ~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 241 KRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred ccccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 778999999976668999999999999999999999999999865
No 3
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=4.3e-69 Score=501.78 Aligned_cols=283 Identities=71% Similarity=1.163 Sum_probs=258.5
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.++++++++|.|.|.+|+.|.++.+.+++||.+++++|||++.++++.|+|||+|++|+|+..+||++|+++|++.+++
T Consensus 5 ~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~ 84 (300)
T PLN00125 5 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAA 84 (300)
T ss_pred ceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHH
Confidence 57889999999999999999999999999999999999999976789999999999999998534799999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
+++||.++|+|.++++|+||+|.++++++.+++|++|+|++||||+|++||....+.+++...+++|+||+|||||+++.
T Consensus 85 al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~~~~~~G~ValiSQSG~l~~ 164 (300)
T PLN00125 85 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTY 164 (300)
T ss_pred HHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCCCCCCCCcEEEEeCCccHHH
Confidence 99999999999999999999999877777778999999999999999999986555555554567999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCCcEEEEEecCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGIT 250 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs 250 (306)
++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+||+|+||+|+++ .+++||||+||+|||
T Consensus 165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs 244 (300)
T PLN00125 165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT 244 (300)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 99999999999999999999998899999999999999999999999999832 356999999999999
Q ss_pred CCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhcC
Q psy8894 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 251 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~~ 305 (306)
++.|+++||||||+++..|++.+|+++|+|+|+++++|++||++.++..|+.-+|
T Consensus 245 ~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~ 299 (300)
T PLN00125 245 APPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299 (300)
T ss_pred CCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence 7448889999999755557999999999999999999999999999999887433
No 4
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=1.5e-68 Score=499.77 Aligned_cols=289 Identities=73% Similarity=1.203 Sum_probs=267.2
Q ss_pred cccccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec--CeeccCCHHhhhhcCCCcEEE
Q psy8894 15 EEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~--Gip~y~sl~el~~~~~iDlav 92 (306)
++.|+++.+++++++.++|.|.|.+|+.|+++.+.+++||.++|++|||++.|+++. |+|||++++|+++++++|+++
T Consensus 14 ~~~~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~av 93 (317)
T PTZ00187 14 RARSSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASV 93 (317)
T ss_pred HHHHhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEE
Confidence 467999999999999999999999999999999999999999999999999889999 999999999999877799999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEE
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVG 172 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va 172 (306)
+++|++.+.++++||+++||+.++|+|+||+|.+..++++.+.+++|+|++||||+|+++|.....+.+|...+.||+||
T Consensus 94 I~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~Vg 173 (317)
T PTZ00187 94 IYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIG 173 (317)
T ss_pred EecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCCEE
Confidence 99999999999999999999999999999999987766633335689999999999999998655555555556799999
Q ss_pred EEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCC
Q psy8894 173 VVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAK 240 (306)
Q Consensus 173 ~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~K 240 (306)
+|||||+++.++++++.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|.++ ..++|
T Consensus 174 iVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~K 253 (317)
T PTZ00187 174 IVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKK 253 (317)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999997779999999999999999999999999874 23689
Q ss_pred cEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 241 PVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 241 PVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
|||+||+|||++.|+++|||||+++++.|++.+|+++|+|+|++++++++||.+.++.+|+++
T Consensus 254 PVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 254 PVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred cEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 999999999976688999999999888899999999999999999999999999999998876
No 5
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=5.7e-64 Score=493.50 Aligned_cols=261 Identities=26% Similarity=0.351 Sum_probs=235.7
Q ss_pred cCCCcEEEEEcCCCCCChHH---HHHHHHcCCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTFH---SKQAIEYGTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.+|++|+|||+|.++++.+ .++|+++||+ .+++|||++ +++.|+|||++++|+|+. ||++++++|++.+++
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~~--~Dlavi~vp~~~~~~ 79 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPDP--VDLAVIVVPAKYVPQ 79 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCCC--CCEEEEecCHHHHHH
Confidence 55699999999998776654 6788888996 667999997 799999999999999986 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhH-----HHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLD-----MVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~-----~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
++++|.++|+|.+|++|+||+|.+ .++.+.++||++|+|++||||+|++||....+.++.+..+.+|+||+||||
T Consensus 80 ~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~l~~~~~~~~~~~G~valvsqS 159 (447)
T TIGR02717 80 VVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGIAFISQS 159 (447)
T ss_pred HHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCCeeeecCCCCCCCCCEEEEech
Confidence 999999999999999999999864 234445689999999999999999999876555554445679999999999
Q ss_pred hhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEE
Q psy8894 178 GTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFI 246 (306)
Q Consensus 178 G~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk 246 (306)
|+++.++++|+.++|+|||++||+||+ +|+++.|+|+||.+||+|++|++|+|+++ .+++||||+||
T Consensus 160 G~~~~~~~~~~~~~g~g~s~~vs~Gn~--~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~~~KPVv~~k 237 (447)
T TIGR02717 160 GALLTALLDWAEKNGVGFSYFVSLGNK--ADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKPIVVLK 237 (447)
T ss_pred HHHHHHHHHHHHhcCCCcceEEECCch--hhCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 999999999999999999999999999 99999999999999999999999999987 34599999999
Q ss_pred ecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q psy8894 247 AGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298 (306)
Q Consensus 247 ~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~ 298 (306)
+|||+. |++ +||||+++ |++.+|+++|+|+|++++++++||+++++.
T Consensus 238 ~Grs~~-g~~aa~sHtgala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~ 286 (447)
T TIGR02717 238 SGTSEA-GAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDLARL 286 (447)
T ss_pred cCCChh-hhhhhhhcccccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHH
Confidence 999975 664 79999999 899999999999999999999999999974
No 6
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.9e-53 Score=424.96 Aligned_cols=275 Identities=27% Similarity=0.435 Sum_probs=234.5
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCC-------eEEEeeCCCC-------CCceecCeeccCCHHhhhhcC-CCc
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGT-------KVVGGVSPGK-------GGKTHLDLPVFNTVKEARDAT-GAE 89 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~-------~vv~~VnP~~-------~g~~i~Gip~y~sl~el~~~~-~iD 89 (306)
.++++.++..|.|. .....+.|++++| .+.+.|+|.. .|+++.|+|+|.+++|..+++ ++|
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 5 QLFSRTTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred eeecCCceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 46788888889986 4457788888766 2566689965 345778999999999999876 689
Q ss_pred EEEEecCchhHHH-HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCC-------
Q psy8894 90 ATVIYVPPPGAAK-AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIM------- 161 (306)
Q Consensus 90 lavi~vp~~~~~~-~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~------- 161 (306)
+.++|+|+..+.+ ++++|.++|||.++|+|+||+|.+..++. ++||++|+||+||||+|+++|....++..
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~-~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~ 159 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLI-AYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNI 159 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHH-HHHHHcCCEEECCCCCeeEccCcccccccccccccc
Confidence 9999999988766 55666668999999999999998866554 58999999999999999999986332221
Q ss_pred -CCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe-eCC----
Q psy8894 162 -PGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGE-IGG---- 235 (306)
Q Consensus 162 -~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E-~~~---- 235 (306)
++..++||+||+|||||+++.++++++.++|+|||++||+||+++.|+++.|+|+||.+||+||+|+||+| +++
T Consensus 160 ~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~ 239 (608)
T PLN02522 160 IQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYS 239 (608)
T ss_pred cCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHH
Confidence 22345799999999999999999999999999999999999996667999999999999999999999999 765
Q ss_pred -------CCCCCcEEEEEecCCCC---CCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhc
Q psy8894 236 -------GPNAKPVVSFIAGITAP---PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLN 304 (306)
Q Consensus 236 -------~~~~KPVvvlk~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~ 304 (306)
..++||||+||+|||++ .++++|||||+++++.+++.+|+++|+|+|+++++|++||+++++.+|++|-
T Consensus 240 f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~ 318 (608)
T PLN02522 240 LVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLV 318 (608)
T ss_pred HHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHH
Confidence 25789999999999983 3456999999997666677999999999999999999999999999999874
No 7
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-52 Score=380.81 Aligned_cols=280 Identities=63% Similarity=1.036 Sum_probs=265.9
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|++++++.+++.|.|+++++|+++.+.+++||++++++|+|+..|.++.|+|+|.+++|+.++++.|+.++|||+..+.+
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aad 80 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAAD 80 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHH
Confidence 57889999999999999999999999999999999999999998999999999999999999888999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
.+.|++++|++.++|+|+|++..|+.++.+ .+++.+++++||||.|++.|....+++.|.+.++||+|++||.||++..
T Consensus 81 ai~EAida~i~liv~ITEgIP~~D~~~~~~-~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTy 159 (293)
T COG0074 81 AILEAIDAGIKLVVIITEGIPVLDMLELKR-YAREKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTY 159 (293)
T ss_pred HHHHHHhCCCcEEEEEeCCCCHHHHHHHHH-HHHhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHH
Confidence 999999999999999999999999877764 6899999999999999999998888888888899999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCCcEEEEEecCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGIT 250 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs 250 (306)
++...+.+.|+|+|.+|++|++.+.++++.|+|+.|.+||+|++|+|..|..+ ...+||||+|-+||+
T Consensus 160 E~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~KPVVa~iaG~t 239 (293)
T COG0074 160 EAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRT 239 (293)
T ss_pred HHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHHhccCCCEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999765 245699999999999
Q ss_pred CCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 251 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
++.|+++.|+||+.+++.|+++.+.++|+.+|+.+++++.++.+.++.+++.+
T Consensus 240 ap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 240 APEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred CCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 98899999999999999999999999999999999999999999999888764
No 8
>KOG1255|consensus
Probab=100.00 E-value=5.7e-50 Score=353.91 Aligned_cols=299 Identities=75% Similarity=1.230 Sum_probs=280.2
Q ss_pred eccCCccccc---cccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhh
Q psy8894 7 RNNSSKVAEE---IYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83 (306)
Q Consensus 7 ~~~~~~~~~~---~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~ 83 (306)
|..++...++ .|++|+-.+.+++.++|.+.|++|+.|+++.+..++||.++|+++||+..|.+..|.|+|.|++|..
T Consensus 12 r~~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~ 91 (329)
T KOG1255|consen 12 RALSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK 91 (329)
T ss_pred hhcCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence 3444444444 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCC
Q psy8894 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPG 163 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~ 163 (306)
++.++|.-++++||..+...++|+++.-|+.++++|+|++..|+.+....+-++...|++||||.||++|.++.++..|.
T Consensus 92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg 171 (329)
T KOG1255|consen 92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG 171 (329)
T ss_pred HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence 98899999999999999999999999999999999999999999887777778888999999999999999999999999
Q ss_pred CCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC--------
Q psy8894 164 HIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-------- 235 (306)
Q Consensus 164 ~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-------- 235 (306)
..+.+|.|++||.||++..+..+.-.+-|+|.|.+|.+|++++.+.+|-|+|+.|.+||+|+.|+|..|..+
T Consensus 172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~ 251 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE 251 (329)
T ss_pred ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence 899999999999999999999998889999999999999999999999999999999999999999999876
Q ss_pred -------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhcC
Q psy8894 236 -------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 236 -------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~~ 305 (306)
....||||-+-+|.+.++|++++|+|++.+++.|++..+.++|+.+|+++.+|+..|..++...|.++.|
T Consensus 252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~kl 328 (329)
T KOG1255|consen 252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKLKL 328 (329)
T ss_pred HHHHhccCCCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHhccC
Confidence 3578999999999999999999999999999999999999999999999999999999998877777764
No 9
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=1.2e-50 Score=407.40 Aligned_cols=262 Identities=25% Similarity=0.365 Sum_probs=236.5
Q ss_pred ccCCCcEEEEEcCCCCCChHH---HHHHHHcCCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFH---SKQAIEYGTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
.+..|++|||+|+|+++++.. .++|+++| + .++||||++ +++.|++||+++.++|+. +|+++++||+..++
T Consensus 6 ~~~~p~svavigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~~--~dlav~~v~~~~~~ 80 (598)
T COG1042 6 RLFAPKSIAVIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPDA--PDLAVIVVPAKVVP 80 (598)
T ss_pred hhhCCceEEEeeccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCCC--CCeeEEEechhhhH
Confidence 455699999999999988876 46778887 5 667999998 799999999999999997 99999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCChhHH-----HHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCC--CCCEEEE
Q psy8894 102 KAIHEALDAEMPLIVCITEGIPQLDM-----VKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQ--RGCVGVV 174 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~Gf~e~~~-----~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~--~G~va~v 174 (306)
+++++|.++|++.+|+++.||.|... ++.+.++|+++++|++||||+|++++..+.+.++.+.... +|+++|+
T Consensus 81 ~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~~g~~afv 160 (598)
T COG1042 81 EIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGRGGGGAFV 160 (598)
T ss_pred HHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEeccccccccccccccccccCcccccccCCCeEEE
Confidence 99999999999999999999987642 3333347899999999999999999987765666554455 8999999
Q ss_pred ecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEE
Q psy8894 175 SRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVV 243 (306)
Q Consensus 175 SqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVv 243 (306)
||||+++..+++|+.+.++|+|+++|.||. +|+++.|+++||.+|+.|++|.||+|++. .+++||+|
T Consensus 161 sqsgav~~~il~~~~~~~~g~s~~vs~gn~--ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~kpii 238 (598)
T COG1042 161 SQSGAVSFAILDWANEDGMGFSIKVSLGNA--ADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKKPII 238 (598)
T ss_pred EechHHHHhccchhhhcCCceeEEEeecch--hhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999 99999999999999999999999999986 36889999
Q ss_pred EEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q psy8894 244 SFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299 (306)
Q Consensus 244 vlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~ 299 (306)
++|+||+.. +++ .||||+++ |++.+|+++|+|+|++++.+++||++.++++
T Consensus 239 ~lk~gr~~~-~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l 291 (598)
T COG1042 239 ALKAGRSEA-GAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKAL 291 (598)
T ss_pred EEeccCCHH-HHHHHhccccccc----ccchhhHHHHHhhCceeccChHHHHHHHHHh
Confidence 999999986 654 69999999 8999999999999999999999999999965
No 10
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=1.2e-39 Score=272.86 Aligned_cols=124 Identities=31% Similarity=0.454 Sum_probs=88.7
Q ss_pred CCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------C
Q psy8894 168 RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------G 236 (306)
Q Consensus 168 ~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~ 236 (306)
||+||+|||||+++..+++++.++|+|||++||+||+ +|+++.|+|+||.+||+|++|++|+|+++ .
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~--~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a 78 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNE--ADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRA 78 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT---SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCcc--ccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999997 3
Q ss_pred CCCCcEEEEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q psy8894 237 PNAKPVVSFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298 (306)
Q Consensus 237 ~~~KPVvvlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~ 298 (306)
++.||||+||+|||+. |++ .||||+++ |++.+|+++|+|+|+++++|++||++++++
T Consensus 79 ~~~KPVv~lk~Grt~~-g~~aa~sHTgsla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 79 ARRKPVVVLKAGRTEA-GARAAASHTGSLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp CCCS-EEEEE--------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred hcCCCEEEEeCCCchh-hhhhhhccCCccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 4559999999999986 654 79999999 899999999999999999999999999863
No 11
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=6.3e-38 Score=309.38 Aligned_cols=198 Identities=22% Similarity=0.297 Sum_probs=163.0
Q ss_pred eeccCCHHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 73 LPVFNTVKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 73 ip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
.|.|+++.++.+. .++|++++++|++.+++.+++|+++| +.+++||.||+.+...+ +.++|+++|+|++|||| |+.
T Consensus 102 ~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~-L~e~Ar~~GlrvmGPNC-G~~ 178 (555)
T PRK06091 102 LTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIR-LKTRAREKGLLVMGPDC-GTA 178 (555)
T ss_pred CcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHH-HHHHHHHcCCEEECCCC-hhh
Confidence 4455555444332 13799999999999999999999999 55788999997554444 45689999999999999 766
Q ss_pred cCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCC----CCCCHHHHHHHhhcCCCccEE
Q psy8894 152 APEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF----NGTNFIDCLEVFLKDPETKGI 227 (306)
Q Consensus 152 ~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~----~dv~~~d~l~~l~~D~~t~~I 227 (306)
+. .+...+|. ...++|+||+|||||+++.+++.|+.++|+|||++||+||+.+ .|+++.|+|+||.+||+|++|
T Consensus 179 ~i-~gl~lsF~-~~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvI 256 (555)
T PRK06091 179 MI-AGTPLAFA-NVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVI 256 (555)
T ss_pred hh-cCCccccc-CCCCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEE
Confidence 63 23222333 2346999999999999999999999999999999999999932 288999999999999999999
Q ss_pred EEEE----eeCC-------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHH
Q psy8894 228 ILIG----EIGG-------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNEL 296 (306)
Q Consensus 228 ~ly~----E~~~-------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~ 296 (306)
++|+ |+++ ++.+||||++|+||++. +. +|+|++++++++|+++.+
T Consensus 257 vly~kppaE~v~~~fl~aar~~~KPVVvlk~Grs~~----------------g~--------~q~GVi~a~tleEl~~~A 312 (555)
T PRK06091 257 AFVSKPPAEAVRLKIINAMKATGKPVVALFLGYTPA----------------VA--------RDENVWFASTLDEAARLA 312 (555)
T ss_pred EEEEecCchHHHHHHHHHHhhCCCCEEEEEecCCch----------------hh--------hcCCeEEeCCHHHHHHHH
Confidence 9999 7775 35699999999999974 22 999999999999999999
Q ss_pred HHH
Q psy8894 297 LKE 299 (306)
Q Consensus 297 ~~~ 299 (306)
.++
T Consensus 313 ~~l 315 (555)
T PRK06091 313 CLL 315 (555)
T ss_pred HHH
Confidence 753
No 12
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.91 E-value=3.9e-24 Score=174.24 Aligned_cols=113 Identities=22% Similarity=0.415 Sum_probs=85.9
Q ss_pred cEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
++|||+|+|.++++++ +++|++.|++++ +|||+. +++.|+++|++++|.|+. +|++++++|++.+.+++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~~--iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPEP--IDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSST---SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCCC--CCEEEEEcCHHHHHHHHHHH
Confidence 5899999999988876 467777899875 999997 899999999999997765 99999999999999999999
Q ss_pred HHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 108 LDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 108 ~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
.++|++.+|+ .+|-.++ ++ .++|+++|++++||||+|+++|
T Consensus 76 ~~~g~~~v~~-~~g~~~~---~~-~~~a~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 76 AALGVKAVWL-QPGAESE---EL-IEAAREAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp HHHT-SEEEE--TTS--H---HH-HHHHHHTT-EEEESS-HHHHHT
T ss_pred HHcCCCEEEE-EcchHHH---HH-HHHHHHcCCEEEeCCcceEEcC
Confidence 9999999995 6662222 22 2478999999999999999875
No 13
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.85 E-value=1.1e-21 Score=161.23 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=114.0
Q ss_pred cccccccccccCCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 17 IYAATRPNLRLTSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi 93 (306)
.++++.+...+++.++|||||+|.++.+.. .+.|++.||+++ ||||+..|+++.|.++|+||+|+|++ +|++.+
T Consensus 3 ~~~~~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe~--IDiVdv 79 (140)
T COG1832 3 NPEEEDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPEP--IDIVDV 79 (140)
T ss_pred CccHHHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCCC--CcEEEE
Confidence 466777788899999999999999998876 468999999997 99999888999999999999999987 999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
|.+++.++++++++++.|++.+| ++.|...++.. +.+++.|+.++-..|+.+-.+
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W-~QlGi~n~ea~----~~~~~aG~~vV~nrCi~~E~~ 134 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVW-LQLGIRNEEAA----EKARDAGLDVVMDRCIMIEHP 134 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEE-EecCcCCHHHH----HHHHHhCcHHHHHhhHHHHHh
Confidence 99999999999999999999988 79998765533 357899999999999876544
No 14
>KOG1254|consensus
Probab=99.68 E-value=4.6e-16 Score=150.06 Aligned_cols=231 Identities=29% Similarity=0.406 Sum_probs=189.3
Q ss_pred CeeccCCHHhhhhcC-CCcEEEEecCchhHHHHHHHHHHcC-CCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 72 DLPVFNTVKEARDAT-GAEATVIYVPPPGAAKAIHEALDAE-MPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 72 Gip~y~sl~el~~~~-~iDlavi~vp~~~~~~~~~e~~~~G-i~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
=+|+|+++.+...+| ..|+-+=+.....+.+--.++.+.| ++.+-++++|.+|.+..++. ..+++.+..++||-+.|
T Consensus 54 ~IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~-~~a~~k~~~iiGPaTvg 132 (600)
T KOG1254|consen 54 LIPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLR-AGAEVKGVGIIGPATVG 132 (600)
T ss_pred EeechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHH-hccccccceEEeeeeec
Confidence 378999876665442 4667666777777777777777765 88888899999998876654 35788899999999999
Q ss_pred eecCccccccCC--------CCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 150 IIAPEQCKIGIM--------PGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 150 i~~~~~~~~~~~--------~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
.+.|....++.. .....+||.+++||.||+|..++.+.-.+.-.|....+.+|++++.+.++.|.+..+.+|
T Consensus 133 gVePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~ 212 (600)
T KOG1254|consen 133 GVEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHD 212 (600)
T ss_pred cccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhcc
Confidence 999976433211 113479999999999999999998777777789999999999999999999999999999
Q ss_pred CCccEEEEEEeeCC------------CCCCCcEEEEEecCCCC---CCCCccCCcccccCCCCCHHHHHHHHHHcCCeEe
Q psy8894 222 PETKGIILIGEIGG------------GPNAKPVVSFIAGITAP---PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT 286 (306)
Q Consensus 222 ~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~ 286 (306)
|.++.|++..|-.+ ....||+|+|..|.++. ...++.|.|+.|......+.+.+++++.+|+.+.
T Consensus 213 ~~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vp 292 (600)
T KOG1254|consen 213 PLVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVP 292 (600)
T ss_pred ChhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCc
Confidence 99999999988776 46789999999999753 2346899999996554577788999999999999
Q ss_pred CCHhHHHHHHHHHHHhh
Q psy8894 287 RSPAQMGNELLKEMKRL 303 (306)
Q Consensus 287 ~~~~el~~~~~~~~~~~ 303 (306)
+++++|.+.++..|+.|
T Consensus 293 esf~~l~~~i~~~~e~l 309 (600)
T KOG1254|consen 293 ESFDALGADIQETYEFL 309 (600)
T ss_pred cchhhhhhhhccchhcc
Confidence 99999999988777654
No 15
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=99.65 E-value=1e-15 Score=120.41 Aligned_cols=93 Identities=28% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCcEEEEEcCCCCCChHHH-HHHHHcCCeE--EEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHS-KQAIEYGTKV--VGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~-~~l~~~g~~v--v~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
|++++++|+|+ |+.|+... ..+...||++ ++.+||+..|+++.|+|+|.+++++.+..++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 88988764 4445557764 44599998899999999999999999866699999999999999999
Q ss_pred HHHHHcCCCEEEEecCC
Q psy8894 105 HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G 121 (306)
+++++.|||.+|+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
No 16
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.44 E-value=3.5e-13 Score=110.86 Aligned_cols=111 Identities=25% Similarity=0.413 Sum_probs=85.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCC---CCce--------ecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGK---GGKT--------HLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~---~g~~--------i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.||+|+|++||||+.+.+.+.+ .++++++.++++. .|+. ..|++++.+++++.+. +|++|+|+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence 4799999999999999998888 5999998888765 2222 3578999999999987 99999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
.+.+.++.|+++|++.|+ .|+||++++.+++. +++++.+ -++.||
T Consensus 79 ~~~~~~~~~~~~g~~~Vi-GTTG~~~~~~~~l~-~~a~~~~-vl~a~N 123 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVI-GTTGFSDEQIDELE-ELAKKIP-VLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHHT-EEEE-E-SSSHHHHHHHHH-HHTTTSE-EEE-SS
T ss_pred HhHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHH-HHhccCC-EEEeCC
Confidence 999999999999999654 89999887766554 4555522 555676
No 17
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=99.44 E-value=2e-13 Score=118.15 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=85.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHH--HHHHHcCCeEEEe--eCCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCc
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHS--KQAIEYGTKVVGG--VSPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~--~~l~~~g~~vv~~--VnP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.+..++.+++++||+ |++|++.. +...++|+++++. +||+..|.++.++|+|. +|++...++++|++++|||+
T Consensus 78 ~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 78 LLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred HhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 457889999999999 99999874 5677889998877 88988899999999998 35555555689999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
+.++++++.++++|||+||+||+.-
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~ 181 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVR 181 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceE
Confidence 9999999999999999999999843
No 18
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.30 E-value=2.2e-11 Score=112.71 Aligned_cols=119 Identities=22% Similarity=0.354 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC-CC--CCc---ee-----cCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP-GK--GGK---TH-----LDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP-~~--~g~---~i-----~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.+|+|+|++|+||+.+.+.+.+. ++++++.+++ .. .+. ++ .|+++|.+++++.. .+|++|+|+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence 48999998899999999988874 9999988883 21 111 11 36889999999943 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
.+.+.++.|+++|++.+ +.|+|+++++.+++. ++|++.|+ -+++||. +|+...
T Consensus 80 ~~~~~~~~al~~g~~vV-igttg~~~e~~~~l~-~aA~~~g~~v~~a~NfSlGv~ll 134 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLV-VGTTGFSEEDKQELA-DLAEKAGIAAVIAPNFSIGVNLM 134 (266)
T ss_pred HHHHHHHHHHHCCCCEE-EECCCCCHHHHHHHH-HHHhcCCccEEEECcccHHHHHH
Confidence 99999999999999964 579999988776665 57888887 5557886 566554
No 19
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.29 E-value=2.5e-11 Score=110.80 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-----------CceecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-----------GKTHLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-----------g~~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.+|+|+|++||||+.+.+.+.+. ++++++.++.... |....|+|+++++.....+ +|++|+|+.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~--~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKAD--ADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccC--CCEEEECCCc
Confidence 468999999999999999988876 7898888775531 1245688999986666554 9999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-CceecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIAP 153 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~~ 153 (306)
+.+.+.++.|.++|++.|+ .||||++++.+++. +++++.+ -++.||. +|+.-.
T Consensus 80 ~~~~~~l~~~~~~~~~lVI-GTTGf~~e~~~~l~-~~a~~v~-vv~a~NfSiGvnll 133 (266)
T COG0289 80 EATLENLEFALEHGKPLVI-GTTGFTEEQLEKLR-EAAEKVP-VVIAPNFSLGVNLL 133 (266)
T ss_pred hhhHHHHHHHHHcCCCeEE-ECCCCCHHHHHHHH-HHHhhCC-EEEeccchHHHHHH
Confidence 9999999999999999765 89999999877664 4666643 5667885 676553
No 20
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.28 E-value=3.7e-11 Score=111.56 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec------Ceecc--CCHHhhhhcC---CCc-EEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL------DLPVF--NTVKEARDAT---GAE-ATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~------Gip~y--~sl~el~~~~---~iD-lavi~vp~ 97 (306)
..+|+|.|+.||||+.+.+.+.+.++++++.++++..|+.+. ++++| .+++++.... .+| ++|+|+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 458999999999999999988889999998899877555332 68899 8888888543 589 89999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
+.+.+.++.|+++|++.|+ .||||++++..+ ++++.++ -++.||. +|++..
T Consensus 91 ~a~~~~~~~~~~~g~~~Vv-GTTG~~~e~l~~----~~~~~~i~vv~apNfSiGv~ll 143 (286)
T PLN02775 91 DAVNDNAELYCKNGLPFVM-GTTGGDRDRLLK----DVEESGVYAVIAPQMGKQVVAF 143 (286)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCCCCHHHHHH----HHhcCCccEEEECcccHHHHHH
Confidence 9999999999999999765 899999886443 4555566 7778986 576654
No 21
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.16 E-value=2.5e-10 Score=105.16 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=92.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+.+|+|+|++|+||+.+.+.+.+. ++++++.+++..... ...|++.|.+++++.++ +|++++|+||+.+.+.++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~--~DvVid~t~p~~~~~~~~ 78 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLAD--ADVLIDFTTPEATLENLE 78 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccC--CCEEEECCCHHHHHHHHH
Confidence 368999999999999999888775 899988887654111 23467889999998764 999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-CceecC
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIAP 153 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~~ 153 (306)
.|+++|++.++ .|+|+++++.+++.+ .+++.+ .++.||. +|+...
T Consensus 79 ~al~~G~~vvi-gttG~s~~~~~~l~~-aa~~~~-v~~s~n~s~g~~~~ 124 (257)
T PRK00048 79 FALEHGKPLVI-GTTGFTEEQLAELEE-AAKKIP-VVIAPNFSIGVNLL 124 (257)
T ss_pred HHHHcCCCEEE-ECCCCCHHHHHHHHH-HhcCCC-EEEECcchHHHHHH
Confidence 99999999764 699999888776654 444444 5556776 455443
No 22
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.12 E-value=5.3e-10 Score=103.42 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCce---ec--Ceec------cCCHHhhhhcCCCc-EEEEecCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKT---HL--DLPV------FNTVKEARDATGAE-ATVIYVPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~---i~--Gip~------y~sl~el~~~~~iD-lavi~vp~~ 98 (306)
+|+|.|+.|+||+.+.+.+.+.++++++. ++++..++. +. ++|+ |.+++++.+. .+| ++|+|+.|+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCChH
Confidence 69999999999999999888889999977 887754432 22 6788 8899998853 488 999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
.+.+.++.|.++|++.|+ .|+|+++++.+++ +++.++ .++.||. +|++..
T Consensus 81 ~~~~n~~~~~~~gv~~Vi-GTTG~~~~~~~~l----~~~~~i~~l~apNfSiGv~ll 132 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPFVM-GTTGGDREALAKL----VADAKHPAVIAPNMAKQIVAF 132 (275)
T ss_pred HHHHHHHHHHHCCCCEEE-cCCCCCHHHHHHH----HHhcCCCEEEECcccHHHHHH
Confidence 999999999999999765 8999998876654 333445 7778996 676653
No 23
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.95 E-value=6.7e-09 Score=83.66 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
||+|||+ |+.|+...+.+++. ++++++.++|+.... +..|+++|.|++++.+..++|++++++|+..+.+.++
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 7999999 88898888777765 778888888874111 2468999999999998667999999999999999999
Q ss_pred HHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 106 EALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+|+++|++ +++=-+ ..+.++.+++. ++++++|..+
T Consensus 81 ~~l~~g~~-v~~EKP~~~~~~~~~~l~-~~a~~~~~~~ 116 (120)
T PF01408_consen 81 KALEAGKH-VLVEKPLALTLEEAEELV-EAAKEKGVKV 116 (120)
T ss_dssp HHHHTTSE-EEEESSSSSSHHHHHHHH-HHHHHHTSCE
T ss_pred HHHHcCCE-EEEEcCCcCCHHHHHHHH-HHHHHhCCEE
Confidence 99999995 565333 23455556655 5788888654
No 24
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.80 E-value=3.4e-08 Score=91.47 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---e-e-cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---T-H-LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---~-i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.||+|+|+ |++|+.+.+.+.+. ++++++.+++..... + . .++++|.+++++ . .++|++++|+|+..+.+.+
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence 58999999 99999999988876 778776654432111 1 1 267899999999 3 3599999999999999999
Q ss_pred HHHHHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEE-ccCCCceecC
Q psy8894 105 HEALDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAP 153 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~ 153 (306)
.+++++|++.+ +.++| +++.+..+.+.++|++.|.++. -|.+.|.++.
T Consensus 79 ~~aL~aGk~Vv-i~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~ 128 (265)
T PRK13303 79 VPILKAGIDCA-VISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDA 128 (265)
T ss_pred HHHHHcCCCEE-EeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHH
Confidence 99999999865 46777 4545444445568999997544 4555666553
No 25
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.69 E-value=1.1e-07 Score=81.06 Aligned_cols=110 Identities=37% Similarity=0.499 Sum_probs=88.3
Q ss_pred EecChhhHHHHHHHHHhC--------------CCceEEEEecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q psy8894 174 VSRSGTLTYEAVHQTTQV--------------GLGQTLCVGIGGDPFN---------GTNFIDCLEVFLKDPETKGIILI 230 (306)
Q Consensus 174 vSqSG~~~~~~~~~~~~~--------------g~g~s~~vs~Gn~~~~---------dv~~~d~l~~l~~D~~t~~I~ly 230 (306)
++.||+|+.+.++.+... +.+.+.++-+|.+.+. .....|.|+.+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999754 67899999999999999999999
Q ss_pred EeeC-C---------------CC---CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhH
Q psy8894 231 GEIG-G---------------GP---NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQ 291 (306)
Q Consensus 231 ~E~~-~---------------~~---~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~e 291 (306)
+|.. + .. +.||||++-.|+.+.+...+.| ..+|+++|+..+.+-++
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~---------------~~~L~~~G~~v~~s~~~ 145 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQ---------------AGALEDAGVIVAESNAQ 145 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHH---------------HHHHHCTTCSCHHHHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHH---------------HHHHHhCCCcccccHHH
Confidence 9976 4 23 6889999999998754443444 35677777777777666
Q ss_pred HHHHHHH
Q psy8894 292 MGNELLK 298 (306)
Q Consensus 292 l~~~~~~ 298 (306)
-...+.+
T Consensus 146 A~~~A~a 152 (153)
T PF00549_consen 146 AARAAGA 152 (153)
T ss_dssp HHHHHTH
T ss_pred HHHHcCC
Confidence 6555543
No 26
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.66 E-value=8.8e-08 Score=85.77 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=75.6
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHH--HHcCCeEEEeeCC--CCCCceecCeeccC--CHHhhhhcCCCcEEEEecCch
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQA--IEYGTKVVGGVSP--GKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l--~~~g~~vv~~VnP--~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~~ 98 (306)
+.+++.++|+|+|+ |+.|+...+.+ .+.|+++++.+|+ ...+..+.|+|++. +++++..++++|.+++++|..
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 45567789999999 99998877643 3469998888764 44445677888764 466665555799999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
...++.+.+.+.|++.+|+|++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCc
Confidence 9999999999999999999876
No 27
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.63 E-value=1.9e-07 Score=86.47 Aligned_cols=111 Identities=9% Similarity=0.144 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+|+|+|+ |++|+...+.+.+. ++++++.+|++... + +..|.+.|.+++++.. ++|++++|+|++.+.+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 48999999 99999998888775 57888888876411 1 2346788999999984 499999999999999999
Q ss_pred HHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
++++++|.+. ++.++|. .+.+..+.+.++|+++|.++.-|
T Consensus 79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 79 PKSLENGKDV-IIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 9999999885 4467654 23333334446899999877644
No 28
>PRK11579 putative oxidoreductase; Provisional
Probab=98.60 E-value=3.8e-07 Score=87.24 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred CCcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++.+|+|||+ |.+|+ .+.+.+.+. ++++++..+++.. .....+.++|.+++++.+..++|++++++|+..+.+.+
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4579999999 88887 456666664 8899888887641 11233677999999998765799999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+|+++|.+ |++==+ ..+.++..++. ++|++.|+.+
T Consensus 82 ~~al~aGkh-Vl~EKPla~t~~ea~~l~-~~a~~~g~~l 118 (346)
T PRK11579 82 KAALEAGKH-VVVDKPFTVTLSQARELD-ALAKSAGRVL 118 (346)
T ss_pred HHHHHCCCe-EEEeCCCCCCHHHHHHHH-HHHHHhCCEE
Confidence 999999977 454111 22444555554 5788888754
No 29
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.49 E-value=8.1e-07 Score=82.58 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--cCCeEEEeeCCCCCCc----eecC-eeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--YGTKVVGGVSPGKGGK----THLD-LPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--~g~~vv~~VnP~~~g~----~i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+.+|+|+|+ |++|+.+.+.+.+ .++++++..++..... +..| .+.|.+++++..+ +|++++++|.+.+.+
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~--~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATH--ADIVVEAAPASVLRA 82 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcC--CCEEEECCCcHHHHH
Confidence 589999999 9999999998886 3788877777754111 1224 3678999999865 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeE-EccCCCcee
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRL-IGPNCPGII 151 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~i-iGPNc~Gi~ 151 (306)
.++.++++|.+. ++.+.|-- .+.+++. ++++++|.++ ++|..++-+
T Consensus 83 ~~~~aL~aGk~V-i~~s~gal-~~~~~L~-~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 83 IVEPVLAAGKKA-IVLSVGAL-LRNEDLI-DLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred HHHHHHHcCCcE-EEecchhH-HhHHHHH-HHHHHcCCEEEEcchHHHhH
Confidence 999999999875 44555521 2233443 5789999877 555554333
No 30
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.41 E-value=1.4e-06 Score=82.82 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.||+|+|+ |++|+.+.+.+++. ++++++.++++.....-.++++|. +.+++.. ++|++++|+|+....+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 479999999 99999988888776 899998877763111112344454 4555544 49999999999999999999
Q ss_pred HHHcCCCEEEEecCCCChhHHHHHHHHHHHh-cCCeEEccCC-Cceec
Q psy8894 107 ALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ-SKSRLIGPNC-PGIIA 152 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~-~gi~iiGPNc-~Gi~~ 152 (306)
++++|++.|-.+-+.....+..+.+.++|++ .++.+++-.. .|+++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~s 127 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFS 127 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHH
Confidence 9999999765443333223344455567887 5688887221 45444
No 31
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.39 E-value=2.1e-06 Score=81.02 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=83.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCc----eecCee-ccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGK----THLDLP-VFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~----~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
++.+|+|||+.+-.++.+...+.+.+ +++++.++++.... +..|++ +|.+++++.+..++|+++|++|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 46899999993344566777888764 68888877765211 345774 999999999876699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCC---CChhHHHHHHHHHHHhcCCe-EEccC
Q psy8894 102 KAIHEALDAEMPLIVCITEG---IPQLDMVKVKHRLIRQSKSR-LIGPN 146 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~G---f~e~~~~~~~~~~ar~~gi~-iiGPN 146 (306)
+++..|+++|++ |+| +. .+.++.+++. ++|+++|+. .+|-|
T Consensus 82 e~~~~AL~aGkh-Vl~--EKPla~t~~ea~~l~-~~a~~~~~~l~v~~~ 126 (342)
T COG0673 82 ELALAALEAGKH-VLC--EKPLALTLEEAEELV-ELARKAGVKLMVGFN 126 (342)
T ss_pred HHHHHHHhcCCE-EEE--cCCCCCCHHHHHHHH-HHHHHcCCceeeehh
Confidence 999999999997 454 42 2344555554 578888863 34444
No 32
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.27 E-value=5.2e-06 Score=79.69 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEec----Cch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYV----PPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~v----p~~ 98 (306)
++.+|+|+|+ .+|+...+.+.+. ++++++.++++.... +..|++.|.+++|++++ +|++++++ |+.
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d--~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDD--IDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcC--CCEEEEEeCCCCCCc
Confidence 5689999998 4788888888774 689998888864211 24589999999999975 77777776 457
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+++.+|+++|++ |++ --=+..++.+++. ++|+++|+.+.
T Consensus 78 ~H~e~a~~aL~aGkH-VL~-EKPla~~Ea~el~-~~A~~~g~~l~ 119 (343)
T TIGR01761 78 QGSALARALLARGIH-VLQ-EHPLHPRDIQDLL-RLAERQGRRYL 119 (343)
T ss_pred cHHHHHHHHHhCCCe-EEE-cCCCCHHHHHHHH-HHHHHcCCEEE
Confidence 899999999999987 454 2223344555555 57899998766
No 33
>PRK10206 putative oxidoreductase; Provisional
Probab=98.25 E-value=6.7e-06 Score=78.84 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCC-hHHHHHHHH--cCCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQG-TFHSKQAIE--YGTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G-~~~~~~l~~--~g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.||+|||+ |+.+ +.+...++. .++++++..++..... ...+++.|.+++++.+..++|++++++|+..+.+.
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 58999999 8754 445565544 3788888877753111 12347899999999976679999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.+|+++|++ |+|==+ ..+.++.+++. ++|+++|+.+.
T Consensus 81 ~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~~~~l~ 119 (344)
T PRK10206 81 AKRALEAGKN-VLVEKPFTPTLAEAKELF-ALAKSKGLTVT 119 (344)
T ss_pred HHHHHHcCCc-EEEecCCcCCHHHHHHHH-HHHHHhCCEEE
Confidence 9999999976 555112 22344555554 57899997653
No 34
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.13 E-value=0.00017 Score=71.76 Aligned_cols=242 Identities=16% Similarity=0.156 Sum_probs=147.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~~~~~ 103 (306)
.++.+|+++.-||.++......+.+.|+..-..|+-.. +. ++..-+-++-+.++.+.++++++.-. ....+.
T Consensus 148 ~~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~a 223 (447)
T TIGR02717 148 PKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KA--DIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKT 223 (447)
T ss_pred CCCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hh--hCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHH
Confidence 34678999999988887777776666444333444432 11 11111112333333357888887553 445556
Q ss_pred HHHHHHcCCCEEEEecCCCChhHH-------------HHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDM-------------VKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGC 170 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~-------------~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~ 170 (306)
++.+.+ +.+ |+++-.|-++.+. .+..+.+.|+.|+..+ -+.--+++... ..... ..++-.+
T Consensus 224 a~~a~~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~~-~l~~~--~~~~g~r 297 (447)
T TIGR02717 224 AREISK-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLAR-LLSNQ--PLPKGNR 297 (447)
T ss_pred HHHHcC-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHHH-HHhcC--CCCCCCe
Confidence 666643 555 5557777776542 1233345677775333 11112222111 11111 1234457
Q ss_pred EEEEecChhhHHHHHHHHHhCCCceEE---------------EEecCCCCCCCC-------CHHHHHHHhhcCCCccEEE
Q psy8894 171 VGVVSRSGTLTYEAVHQTTQVGLGQTL---------------CVGIGGDPFNGT-------NFIDCLEVFLKDPETKGII 228 (306)
Q Consensus 171 va~vSqSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~~dv-------~~~d~l~~l~~D~~t~~I~ 228 (306)
|++||-||+.+..+.+.+.+.|+-+-. ..+.+|- .|+ .+.+.++.+.+||++.+++
T Consensus 298 vaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NP--lDl~~~~~~~~~~~al~~l~~dp~vd~Vl 375 (447)
T TIGR02717 298 VAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNP--VDVLGDATPERYAKALKTVAEDENVDGVV 375 (447)
T ss_pred EEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCC--EecCCCCCHHHHHHHHHHHHcCCCCCEEE
Confidence 999999999999999999999987662 3566665 444 4578899999999999988
Q ss_pred EEEeeCC---------------CC-CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q psy8894 229 LIGEIGG---------------GP-NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQM 292 (306)
Q Consensus 229 ly~E~~~---------------~~-~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el 292 (306)
+.+-... .+ .+|||++.-.|-. ..+.....|+++|+...+++++-
T Consensus 376 v~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg~-------------------~~~~~~~~L~~~Gip~f~~p~~A 436 (447)
T TIGR02717 376 VVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGGK-------------------SVDPAKRILEENGIPNYTFPERA 436 (447)
T ss_pred EEccCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCCc-------------------cHHHHHHHHHhCCCCccCCHHHH
Confidence 6543111 22 3899977643311 22334677899999999999998
Q ss_pred HHHHHHHH
Q psy8894 293 GNELLKEM 300 (306)
Q Consensus 293 ~~~~~~~~ 300 (306)
..++..++
T Consensus 437 ~~al~~~~ 444 (447)
T TIGR02717 437 VKALSALY 444 (447)
T ss_pred HHHHHHHH
Confidence 87776443
No 35
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.04 E-value=1.5e-05 Score=76.06 Aligned_cols=126 Identities=23% Similarity=0.272 Sum_probs=83.7
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
|+++. .+..-+.++|+|||. |++|+...++|++.|++++....+..... +..|+... +++++.+. .|+++++
T Consensus 6 ~~~d~-~~~~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~--ADVVvLa 80 (330)
T PRK05479 6 YDKDA-DLSLIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKW--ADVIMIL 80 (330)
T ss_pred ccCCC-ChhhhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhc--CCEEEEc
Confidence 34444 445556689999999 99999999999999999764433321011 23466655 78888876 8999999
Q ss_pred cCchhHHHHH-HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 95 VPPPGAAKAI-HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 95 vp~~~~~~~~-~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
+|+....+++ ++...+ .-..+++|+.||+-..... ..-+...+-.+-||+.|-.
T Consensus 81 VPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 81 LPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHL 136 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchh
Confidence 9999888888 545443 2345668999997554221 1112233444458887763
No 36
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.01 E-value=3e-05 Score=71.62 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCC-ce-ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGG-KT-HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g-~~-i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+||+|+|+ |.+|+.+.+.+.+. ++++++..++.... +. ....+++.+++++... .+|++|=|.+++.+.+..
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence 368999999 99999999887653 47776553333200 11 2237889999997432 499999999999999999
Q ss_pred HHHHHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 105 HEALDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+.++++|+..++ +|.| |.+++..+.++++|++.|-++.=|.
T Consensus 80 ~~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A~~~g~~i~ipS 121 (267)
T PRK13301 80 EGCLTAGLDMII-CSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred HHHHhcCCCEEE-EChhHhcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 999999999876 5754 5666666666778999888777665
No 37
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.97 E-value=5.9e-05 Score=67.79 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+|.+||+ |..|+.+.+.+++. +++.++.-|....- . .-.+.++-.+|+|+.+. +|++|=+..++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~--~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAE--VDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhc--cceeeeeCCHHHHHHHhH
Confidence 6899999 99999999888764 68877665544210 1 12344555789999865 999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Cceec
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIA 152 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~ 152 (306)
++++.|++.+++-..-++++++.+.++++||..+-++-=|.- +|-++
T Consensus 79 ~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD 126 (255)
T COG1712 79 KILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLD 126 (255)
T ss_pred HHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHH
Confidence 999999998775444567888888888899999987776653 34333
No 38
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.88 E-value=4.6e-05 Score=65.42 Aligned_cols=117 Identities=17% Similarity=0.305 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+.++|+|+|+ |++|+....||++.|++++.+..+.... .+..|+.+++ ++|+.+. -|++++.+|.+...++.+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~-~~eAv~~--aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMS-VAEAVKK--ADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCE-HHHHHHC---SEEEE-S-HHHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeecc-HHHHHhh--CCEEEEeCChHHHHHHHH
Confidence 4589999999 9999999999999999977566665311 1457988885 8888776 999999999999999986
Q ss_pred HHHH--cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 106 EALD--AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 106 e~~~--~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
+-++ ..-..+++|+.||+-.- ... +.-+.-++-++-|...|-.-
T Consensus 79 ~~I~p~l~~G~~L~fahGfni~~--~~i-~pp~~vdV~mvAPKgpG~~v 124 (165)
T PF07991_consen 79 EEIAPNLKPGATLVFAHGFNIHY--GLI-KPPKDVDVIMVAPKGPGHLV 124 (165)
T ss_dssp HHHHHHS-TT-EEEESSSHHHHC--TTS----TTSEEEEEEESSSCHHH
T ss_pred HHHHhhCCCCCEEEeCCcchhhc--Ccc-cCCCCCeEEEEecCCCChHH
Confidence 6665 34667788999995321 000 01123345666777766554
No 39
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.85 E-value=5.6e-05 Score=71.80 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=76.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~~ 105 (306)
.++|+|||+ |++|....++|++.|++++...++.... +. -.|+.+. +..++.+. .|++++++|++ ....+.+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~--ADiVvLaVpp~~~~~~v~~ 78 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQ--ADLIMNLLPDEVQHEVYEA 78 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhc--CCEEEEeCCcHhHHHHHHH
Confidence 478999999 9999999999999999866455553211 11 2366655 47776655 89999999999 5444455
Q ss_pred HHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 106 EALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 106 e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
++... .-+.++.|+.||+-...+.. +-+...+-.+-||+.|-
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~~~~---~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFVQIV---PPKDVDVVMVAPKGPGT 121 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhcccc---CCCCCcEEEECCCCCcH
Confidence 45442 22347779999986543321 21223465667999885
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.80 E-value=6.2e-05 Score=64.45 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~~e 106 (306)
++|++||. |+||+...++|.+.|+++. ..|+.... ++ -.|.....|++|+.+. .|++++++|. +.+.+++..
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~~--~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAEQ--ADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHHH--BSEEEE-SSSHHHHHHHHHC
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhhc--ccceEeecccchhhhhhhhh
Confidence 68999999 9999999999999999964 45554210 11 2478899999999987 8999999998 555677776
Q ss_pred --HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 107 --ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 107 --~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.. ..-..+++-.+-.+.+...++.+ .+++.|++++
T Consensus 78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~-~~~~~g~~~v 116 (163)
T PF03446_consen 78 ENILAGLRPGKIIIDMSTISPETSRELAE-RLAAKGVRYV 116 (163)
T ss_dssp TTHGGGS-TTEEEEE-SS--HHHHHHHHH-HHHHTTEEEE
T ss_pred hHHhhccccceEEEecCCcchhhhhhhhh-hhhhccceee
Confidence 554 33455555344444444444443 4567777655
No 41
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.80 E-value=5.8e-05 Score=70.57 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=87.5
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+.+-+.++|||||. |..|.+...||++.|.+++.++-+.... .+..|+.+|. ++|+... .|++++.+|.+..
T Consensus 12 ~l~~LkgK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k~--ADvim~L~PDe~q 87 (338)
T COG0059 12 DLDLLKGKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAKR--ADVVMILLPDEQQ 87 (338)
T ss_pred ChhHhcCCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhhc--CCEEEEeCchhhH
Confidence 444666789999999 9999999999999999977676665311 1357999887 8888776 9999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 101 AKAIHEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 101 ~~~~~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
.++.++-++- .-..++.|+.||.-.-.. . +.-+.-++-++-|-|.|=..
T Consensus 88 ~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~--i-~ppkdvdV~MVAPKgPG~~V 138 (338)
T COG0059 88 KEVYEKEIAPNLKEGAALGFAHGFNIHFGL--I-VPPKDVDVIMVAPKGPGHLV 138 (338)
T ss_pred HHHHHHHhhhhhcCCceEEeccccceecce--e-cCCccCcEEEEcCCCCcHHH
Confidence 9988866653 233467799999643210 0 11233445666777766443
No 42
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.79 E-value=7.5e-05 Score=70.92 Aligned_cols=127 Identities=21% Similarity=0.327 Sum_probs=83.9
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
|+++. .+..-+.++|+|||. |++|+...++|+..|++++...++....+ +..|..++ +++|+... .|++++++
T Consensus 5 ~~~d~-~~~~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~--ADVV~llL 79 (335)
T PRK13403 5 YEKDA-NVELLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRT--AQVVQMLL 79 (335)
T ss_pred ccccC-ChhhhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhc--CCEEEEeC
Confidence 34444 555666789999999 99999999999999999864444432101 13466654 79999886 99999999
Q ss_pred CchhHHHHHHH-HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 96 PPPGAAKAIHE-ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 96 p~~~~~~~~~e-~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
|.+....++.+ ... ..-..+++|+.||+-.-. .+ .--+.-++-++-|-+.|=..
T Consensus 80 Pd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~-~i--~pp~~vdv~mvaPKgpG~~v 135 (335)
T PRK13403 80 PDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG-QI--NPPSYVDVAMVAPKSPGHLV 135 (335)
T ss_pred CChHHHHHHHHHHHhcCCCCCEEEECCCcceecC-ce--eCCCCCeEEEECCCCCChHH
Confidence 98777777653 333 345678889999963210 00 01123344566666665443
No 43
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.79 E-value=0.00016 Score=65.40 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCC-CC-Cc---eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPG-KG-GK---THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~-~~-g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+..+|+|+|+ |++|+...+.+.+.+ .+.+..+++. .. .+ +..++..+.+++++.++ .|++++++|+..+
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~DiViiavp~~~~ 79 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTS--VDTIVLAMPPSAH 79 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhc--CCEEEEecCHHHH
Confidence 4578999998 999999988887765 3323355542 10 11 12367778888888765 9999999999999
Q ss_pred HHHHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 101 AKAIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 101 ~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
.++++++... .=+.++..+.|++-+.+++. +-....+..++||..
T Consensus 80 ~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~---~~~~~~v~r~~Pn~a 125 (245)
T PRK07634 80 EELLAELSPLLSNQLVVTVAAGIGPSYLEER---LPKGTPVAWIMPNTA 125 (245)
T ss_pred HHHHHHHHhhccCCEEEEECCCCCHHHHHHH---cCCCCeEEEECCcHH
Confidence 9999887642 22566667889876654332 111123444677643
No 44
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.78 E-value=0.00012 Score=66.41 Aligned_cols=97 Identities=8% Similarity=0.086 Sum_probs=69.2
Q ss_pred CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC-ChhHHH
Q psy8894 54 GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI-PQLDMV 128 (306)
Q Consensus 54 g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf-~e~~~~ 128 (306)
++++++..|+..... +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|++.+ |.++|. .+.+..
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl-~~s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLL-IMSVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEE-EECCcccCCHHHH
Confidence 456777777764111 23578899999999753 59999999999999999999999999865 478774 333333
Q ss_pred HHHHHHHHhcCCeEE-ccCCCceec
Q psy8894 129 KVKHRLIRQSKSRLI-GPNCPGIIA 152 (306)
Q Consensus 129 ~~~~~~ar~~gi~ii-GPNc~Gi~~ 152 (306)
+.+.+++++.|.++. +++.+|..+
T Consensus 79 ~~l~~aA~~~g~~l~i~sGai~g~d 103 (229)
T TIGR03855 79 ERLREVARSSGRKVYIPSGAIGGLD 103 (229)
T ss_pred HHHHHHHHhcCCEEEEChHHHHHHH
Confidence 344468899997555 554444443
No 45
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.78 E-value=9.4e-05 Score=71.04 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec---C-ee-----ccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL---D-LP-----VFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~---G-ip-----~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|+|+|++|..|+...+.+.+. ++++++..+++..++.+. + ++ .|.++++... .++|++++|+|...+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHHH
Confidence 68999999999999999988887 888887777543333221 1 21 3444544321 259999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
.+.+.++.++|++. +-.++.|.-
T Consensus 82 ~~~v~~a~~aG~~V-ID~S~~fR~ 104 (343)
T PRK00436 82 MDLAPQLLEAGVKV-IDLSADFRL 104 (343)
T ss_pred HHHHHHHHhCCCEE-EECCcccCC
Confidence 99999999999874 446877754
No 46
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.75 E-value=0.00016 Score=78.21 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=83.9
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCe------------EEEeeCCCCCC-ce----ecC---eec-cCCHHhhhh
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTK------------VVGGVSPGKGG-KT----HLD---LPV-FNTVKEARD 84 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~------------vv~~VnP~~~g-~~----i~G---ip~-y~sl~el~~ 84 (306)
..+.++|+|+|+ |++|+.+.+.+.+. +++ ++...++.... ++ ..+ +++ +.+.+++.+
T Consensus 566 ~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 566 TKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred cccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH
Confidence 345789999999 99999999988775 444 45566654311 11 113 455 667777764
Q ss_pred c-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCc
Q psy8894 85 A-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPE 154 (306)
Q Consensus 85 ~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~ 154 (306)
. .++|++|.++|+..+.++++.|+++|++.+ +..+..+++.++. +.|+++|+.++ |.|. ++|.
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv---~eky~~~e~~~L~-e~Ak~AGV~~m-~e~G--lDPG 708 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLV---TASYVSEEMSALD-SKAKEAGITIL-CEMG--LDPG 708 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEE---ECcCCHHHHHHHH-HHHHHcCCEEE-ECCc--cCHH
Confidence 1 249999999999999999999999999853 3345555555554 57899998766 5553 5554
No 47
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00011 Score=70.42 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=67.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC---------C-c------------eecCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG---------G-K------------THLDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~---------g-~------------~i~Gip~y~sl~el~~~~~ 87 (306)
.||+|+|+ |++|+.+.+.+.+. ++++++..+++.. | + .-.+++++.+++++...
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 58999999 99999998887765 8999887764320 0 0 01257788888888765
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+|++++|+|+..+.+.++.++++|++. + ++.+
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~V-I-~~~~ 110 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKA-I-FQGG 110 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEE-E-EcCC
Confidence 999999999999999999999999653 3 4555
No 48
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.70 E-value=0.00019 Score=70.95 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--------c--CCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--------Y--GTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--------~--g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
+.+|+|+|+ |..|+..++.+.+ . ++++++..+++... ....+..+|.+++++....++|+++.+++
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 579999999 9999977655433 2 45677776654311 12334568889999987556999999986
Q ss_pred c-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 97 P-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 97 ~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+ +.+.+.+++|+++|++. ++-......+...++ .++|+++|+.+.
T Consensus 82 ~~~~~~~~~~~aL~~GkhV-VtaNK~~~a~~~~eL-~~lA~~~gv~l~ 127 (426)
T PRK06349 82 GIEPARELILKALEAGKHV-VTANKALLAVHGAEL-FAAAEEKGVDLY 127 (426)
T ss_pred CchHHHHHHHHHHHCCCeE-EEcCHHHHHHHHHHH-HHHHHHcCCcEE
Confidence 5 67789999999999874 321122211223344 468999998665
No 49
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.67 E-value=0.00014 Score=68.23 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=66.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCC--CC---ceecCeec-cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGK--GG---KTHLDLPV-FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~--~g---~~i~Gip~-y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.+|+|||+ |++|+.+...+++ .++++++.+++.. .+ .+..|++. |.+++++.+..++|++++++|+..+.+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 58999998 9999988666654 4788777765433 11 12357775 5588988765469999999999999999
Q ss_pred HHHHHHcCCCEEEEecC
Q psy8894 104 IHEALDAEMPLIVCITE 120 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~ 120 (306)
+..+.++|++. ++.++
T Consensus 81 a~~al~aGk~V-IdekP 96 (285)
T TIGR03215 81 ARLLAELGKIV-IDLTP 96 (285)
T ss_pred HHHHHHcCCEE-EECCc
Confidence 99999999884 54454
No 50
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.65 E-value=0.00015 Score=60.07 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
..+|.|||+ ||.|+...+.|.+.|+.+.+..+++.... .+.+.++. ++.|+..+ .|+++++||.+...+++
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~~--aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAIL-DLEEILRD--ADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGCC---SEEEE-S-CCHHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccc-cccccccc--CCEEEEEechHHHHHHH
Confidence 468999999 99999999999999999876656543111 23344444 57777765 99999999999999999
Q ss_pred HHHHHc---CCCEEEEecCCCChhH
Q psy8894 105 HEALDA---EMPLIVCITEGIPQLD 126 (306)
Q Consensus 105 ~e~~~~---Gi~~vvi~t~Gf~e~~ 126 (306)
+++... .-..+++-|+|-...+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHhccCCCCcEEEECCCCChHH
Confidence 999886 3455778899875444
No 51
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.64 E-value=0.0003 Score=67.56 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=73.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc----------CCeEEEeeCCCC-----CCce---------ecC-eecc------CC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY----------GTKVVGGVSPGK-----GGKT---------HLD-LPVF------NT 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~----------g~~vv~~VnP~~-----~g~~---------i~G-ip~y------~s 78 (306)
..+|+|+|+ |++|+...+.+.+. ++++++.+|++. .|-. -.| +..| .+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 358999999 99999887766543 567888877531 0100 011 2333 37
Q ss_pred HHhhhhcCCCcEEEEecCchh-----HHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 79 VKEARDATGAEATVIYVPPPG-----AAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~-----~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
++++..+.++|++|+++|+.. +.+.+++|+++|++. ++-+.+.-.....++ .++|+++|..+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL-~~~A~~~g~~~~ 148 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKEL-KELAKKNGVRFR 148 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHH-HHHHHHcCCEEE
Confidence 888876556999999999744 478999999999884 432223322223344 457899998666
No 52
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.61 E-value=0.00014 Score=59.14 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC-CCceec----------CeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK-GGKTHL----------DLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~-~g~~i~----------Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
||+|+|++|..|+...+.|.++ .++++..+..+. .|+.+. .+.+-. +.+++ . ++|+++.|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence 6999999999999999999887 778777766554 444321 111111 23344 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+....+++.|++ ++=.++-|.
T Consensus 78 ~~~~~~~~~~~~g~~-ViD~s~~~R 101 (121)
T PF01118_consen 78 ASKELAPKLLKAGIK-VIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHTTSE-EEESSSTTT
T ss_pred HHHHHHHHHhhCCcE-EEeCCHHHh
Confidence 999999999999996 344677664
No 53
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.54 E-value=0.00026 Score=66.82 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC--CC---ceecCeec-cCCHHhhhhc---CCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK--GG---KTHLDLPV-FNTVKEARDA---TGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~--~g---~~i~Gip~-y~sl~el~~~---~~iDlavi~vp~~ 98 (306)
++.+|+|||. |+.|+.+...+++. ++++++.++++. .+ ..-.|++. |.+++++.+. .++|++++++|+.
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4578999995 99999877666654 788887765543 12 12358886 5789999864 4699999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.+.+....+.++|+.. +..++=
T Consensus 82 ~H~e~a~~a~eaGk~V-ID~sPA 103 (302)
T PRK08300 82 AHVRHAAKLREAGIRA-IDLTPA 103 (302)
T ss_pred HHHHHHHHHHHcCCeE-EECCcc
Confidence 9999999999999885 445653
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.51 E-value=0.0003 Score=54.31 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCCCCCc----eecCeeccC-CHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPGKGGK----THLDLPVFN-TVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~~~g~----~i~Gip~y~-sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+++|+ |+||+...+.+.+.| .++....+++.... +..+..++. +..|+.++ .|++++++||....++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQE--ADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHH--TSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhcc--CCEEEEEECHHHHHHH
Confidence 6899999 999999999999998 66542335543101 234556666 78888776 9999999999999999
Q ss_pred HHHH
Q psy8894 104 IHEA 107 (306)
Q Consensus 104 ~~e~ 107 (306)
+++.
T Consensus 78 ~~~i 81 (96)
T PF03807_consen 78 LSEI 81 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 55
>KOG2741|consensus
Probab=97.44 E-value=0.001 Score=63.29 Aligned_cols=113 Identities=10% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCCCc----eecC---eeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKGGK----THLD---LPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~g~----~i~G---ip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
..+.|+.++|+ |++++...+.+.- .++++++..+|+.... +-++ .++|.|.+++.+...+|++.+.+|.
T Consensus 4 s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 4 SATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred CceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 45689999999 8888776665433 4788999999964211 1123 4799999999987678999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
..+.+++..++++|.+ |+|=-+ ..+.++.+++. ++||++|+-++
T Consensus 83 ~qH~evv~l~l~~~K~-VL~EKPla~n~~e~~~iv-eaA~~rgv~~m 127 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH-VLCEKPLAMNVAEAEEIV-EAAEARGVFFM 127 (351)
T ss_pred ccHHHHHHHHHHcCCc-EEecccccCCHHHHHHHH-HHHHHcCcEEE
Confidence 9999999999999988 555222 44566666666 57999997554
No 56
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.00051 Score=65.19 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee----------cC------eeccCCHHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH----------LD------LPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i----------~G------ip~y~sl~el~~~~~iDlav 92 (306)
.++|+|+|+ |.||......|.+.|+++. .+++.... +.+ .| +....+++++.+. .|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCEEE
Confidence 458999999 9999999999999999864 55554210 001 13 3345567776554 89999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
+++|+..+.++++.+. .+. .++.++.|+...
T Consensus 80 ~~v~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~ 110 (328)
T PRK14618 80 VAVPSKALRETLAGLP-RAL-GYVSCAKGLAPD 110 (328)
T ss_pred EECchHHHHHHHHhcC-cCC-EEEEEeeccccC
Confidence 9999998877776543 333 456678887533
No 57
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.42 E-value=0.00055 Score=58.28 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCC-------------CCCC--ceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSP-------------GKGG--KTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP-------------~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+|+|+|+ |+.|.+....+.+.|.++. +.-++ .+.. .--..+.+..+++++.+. .|++++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED--ADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--ccEEEecc
Confidence 6999999 9999999888888887743 22221 1100 011245677789888775 89999999
Q ss_pred CchhHHHHHHHHHHc--CCCEEEEecCCCChhH---HHHHHHHHHHhcCC-eEEccCC
Q psy8894 96 PPPGAAKAIHEALDA--EMPLIVCITEGIPQLD---MVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 96 p~~~~~~~~~e~~~~--Gi~~vvi~t~Gf~e~~---~~~~~~~~ar~~gi-~iiGPNc 147 (306)
|.....++++++... .-+.+++.+-||.... ..++.++......+ -+.||+-
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~ 135 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSF 135 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccH
Confidence 999999999998873 2344556777992221 23333333333323 4456663
No 58
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.41 E-value=9e-05 Score=59.74 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred cCCCCCChHHHHHHHHc----CCeEEEeeCCC--CCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 37 GFTGKQGTFHSKQAIEY----GTKVVGGVSPG--KGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 37 Gasg~~G~~~~~~l~~~----g~~vv~~VnP~--~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
|+ |++|+..++.+.+. ++++++..+.+ .... ...+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 55 78888888877664 67888777776 1001 123456778899998733599999999999999999999
Q ss_pred HHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEE
Q psy8894 108 LDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 108 ~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~ii 143 (306)
+++|++.|. .+-| ++....-+.+.++|+++|.++.
T Consensus 80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 80 LERGKHVVT-ANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHTTCEEEE-S-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHCCCeEEE-ECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 999999644 3322 2211223334468999998764
No 59
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.41 E-value=0.00092 Score=62.83 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e 106 (306)
+|+++|. |+||+...++|.+.|++++ ..|++.... .-.|..++.+++|+.+.. .+|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 7999999 9999999999999999965 566653101 124778888898887631 379999999987 66777766
Q ss_pred HHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCce
Q psy8894 107 ALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGI 150 (306)
Q Consensus 107 ~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi 150 (306)
+... .- +.++..+++.++ ...++. +.+++.|++++ .|.+-|.
T Consensus 80 l~~~l~~g~ivid~st~~~~-~~~~~~-~~~~~~g~~~~dapvsG~~ 124 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYK-DDIRRA-ELLAEKGIHFVDVGTSGGV 124 (301)
T ss_pred HHhhCCCCCEEEeCCCCChh-HHHHHH-HHHHHcCCEEEeCCCCcCH
Confidence 6543 12 334445555443 333333 35678888766 4555443
No 60
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.40 E-value=0.0012 Score=60.92 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
.+|+++|+ |+||....+.+.+.+. +-+...+|+. +. .+.....+..++.++ .|++++++||....++++++
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~--~D~Vilavkp~~~~~vl~~i 77 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAKT--CDIIVLAVKPDLAGKVLLEI 77 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHHh--CCEEEEEeCHHHHHHHHHHH
Confidence 57999999 9999999998888752 2345778764 22 244445566666654 89999999999999999998
Q ss_pred HHc-CCCEEEEecCCCChhHHHH
Q psy8894 108 LDA-EMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e~~~~~ 129 (306)
... .-+.+|....|++.+..++
T Consensus 78 ~~~l~~~~iIS~~aGi~~~~l~~ 100 (260)
T PTZ00431 78 KPYLGSKLLISICGGLNLKTLEE 100 (260)
T ss_pred HhhccCCEEEEEeCCccHHHHHH
Confidence 752 3356777889998655443
No 61
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.39 E-value=0.00095 Score=62.71 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhc-CCCcEEEEecCchhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDA-TGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+|+|||. |+||+...++|.+.|++++ ..|++... +. -.|...+.+++++.+. ..+|++++++|+..+.++++++
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 6999999 9999999999999999965 45655310 11 1355666777776542 2489999999999888888877
Q ss_pred HHcC-C-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 108 LDAE-M-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 108 ~~~G-i-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
...- - +.++..+++.++ +..++.. .+++.|++.+.-
T Consensus 80 ~~~l~~g~ivid~st~~~~-~t~~~~~-~~~~~g~~~vda 117 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYK-DSLRRYK-LLKEKGIHLLDC 117 (298)
T ss_pred HhhCCCCCEEEECCCCCcc-cHHHHHH-HHHhcCCeEEec
Confidence 6531 2 334434444433 3333332 356778876653
No 62
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.38 E-value=0.00076 Score=61.92 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|+|+|+ |++|+...+.+.+.| +++ ..++++.... +..|+.+..+..++..+ .|++++++|+....++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v-~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~--advVil~v~~~~~~~v 78 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDI-IVSDPSPEKRAALAEEYGVRAATDNQEAAQE--ADVVVLAVKPQVMEEV 78 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceE-EEEcCCHHHHHHHHHhcCCeecCChHHHHhc--CCEEEEEcCHHHHHHH
Confidence 47999999 999999999888877 443 4677653111 11366777788777655 9999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCChhH
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
++++....-+.++-++.|.+.+.
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~ 101 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLAR 101 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHH
Confidence 99987642245666788886544
No 63
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.34 E-value=0.0013 Score=61.75 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e 106 (306)
+|++||. |+||....+++.+.|++++ ..|++... + .-.|..++.+++++.++. ..|++++++|+. .+.+++++
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 6999999 9999999999999999965 56665310 1 124778888999887541 269999999998 77777777
Q ss_pred HHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 107 ALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 107 ~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+... .-..+++-++..+.....++.+ .+++.|++++
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~-~~~~~g~~~v 116 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAE-ELAERGIHYV 116 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHH-HHHHcCCeEE
Confidence 6543 2233444343333334444443 3566777665
No 64
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.31 E-value=0.00089 Score=62.91 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCeeccCCHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH----------------LDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i----------------~Gip~y~sl~el~~~~~iDlavi 93 (306)
++|+|+|+ |.+|......|.+.|+++. .+++...- +.+ .+.....+++++.+. .|++++
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--ADLILV 77 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--CCEEEE
Confidence 47999999 9999999999999999853 55543200 000 134455677777655 899999
Q ss_pred ecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 94 YVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
++|+..+.++++++... .- +.++.++.|+..+
T Consensus 78 ~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~ 111 (325)
T PRK00094 78 AVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG 111 (325)
T ss_pred eCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence 99999888888877653 22 3345466688654
No 65
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.29 E-value=0.002 Score=60.03 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~-- 104 (306)
++|+|+|. |.+|....+.+.+.|++++ ..|++... + .-.|.....+++++.++ .|++++++|...... ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~~--~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAEQ--CDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHhc--CCEEEEeCCCHHHHHHHHcC
Confidence 47999998 9999999999999999865 56665310 1 12366677788888776 999999999765433 33
Q ss_pred -HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 -HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 -~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+.+... .-..+++-++..+....+++. +.+++.|++++-
T Consensus 79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~-~~~~~~g~~~~d 119 (296)
T PRK11559 79 ENGIIEGAKPGTVVIDMSSIAPLASREIA-AALKAKGIEMLD 119 (296)
T ss_pred cchHhhcCCCCcEEEECCCCCHHHHHHHH-HHHHHcCCcEEE
Confidence 223332 223344423334444334443 345566776553
No 66
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.28 E-value=0.0016 Score=60.49 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCCC--c----eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKGG--K----THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~g--~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|+|+|+ |++|+...+.+.+.| .+++ .++++... . ...+..+..+..++.++ .|++++++|+..+
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~--aDvVilavpp~~~ 77 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFTK--CDHSFICVPPLAV 77 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhh--CCEEEEecCHHHH
Confidence 36999998 999999999888877 4554 55554200 0 11134556677777665 8999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCChhHHHH
Q psy8894 101 AKAIHEALDA--EMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 101 ~~~~~e~~~~--Gi~~vvi~t~Gf~e~~~~~ 129 (306)
.++++++... .=+.++.++.|++.+++++
T Consensus 78 ~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 78 LPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE 108 (277)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 9999988642 1235666889998766554
No 67
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.25 E-value=0.0026 Score=60.50 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe-EEEee-------------CCCCCCc-e-ecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGV-------------SPGKGGK-T-HLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~V-------------nP~~~g~-~-i~Gip~y~sl~el~~~~~iDlavi 93 (306)
+++|+|+|+ |.-|++..+.+.+.|.+ .+|.- |+++-.. . -.++....+++++.+. .|++++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG--ADIIVI 77 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc--CCEEEE
Confidence 368999999 99999999999998887 55664 3333111 1 1245677789999875 999999
Q ss_pred ecCchhHHHHHHHHH---HcCCCEEEEecCCCChhHHHHHHHHHH-HhcC---C-eEEccCC
Q psy8894 94 YVPPPGAAKAIHEAL---DAEMPLIVCITEGIPQLDMVKVKHRLI-RQSK---S-RLIGPNC 147 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~---~~Gi~~vvi~t~Gf~e~~~~~~~~~~a-r~~g---i-~iiGPNc 147 (306)
.+|.....+++++.. ..+.+.++ .|-||.......+ .++. +..+ + -+.|||-
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~-~sKGie~~t~~l~-seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVS-ATKGLEPETGRLL-SEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred ECChHHHHHHHHHHhhhccCCCeEEE-EeccccCCCcchH-HHHHHHHcCCCeEEEEECccH
Confidence 999999999999874 55666555 6889965432222 2222 2223 3 5668874
No 68
>PRK07680 late competence protein ComER; Validated
Probab=97.21 E-value=0.0017 Score=60.07 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=66.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCc-----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGK-----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~-----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+|+|+ |+||+...+.|.+.|+ ..+...+++.... ...|+.++.+..++..+ .|++++++|+..+.++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQ--SDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHh--CCEEEEecCHHHHHHH
Confidence 6999998 9999999999988874 2344667653110 11267777888887665 8999999999999999
Q ss_pred HHHHHHc--CCCEEEEecCCCChhH
Q psy8894 104 IHEALDA--EMPLIVCITEGIPQLD 126 (306)
Q Consensus 104 ~~e~~~~--Gi~~vvi~t~Gf~e~~ 126 (306)
++++... .-+.++-++.|.+-+.
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~ 103 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQ 103 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHH
Confidence 9887642 1245666777875433
No 69
>PLN02256 arogenate dehydrogenase
Probab=97.19 E-value=0.0015 Score=61.73 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=58.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.++|+|+|+ |.+|....+.+.+.|++++ +++++.... ...|+..+.+++++... ++|++++++|+....+++++
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVSFFRDPDDFCEE-HPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCeeeCCHHHHhhC-CCCEEEEecCHHHHHHHHHh
Confidence 3568999998 9999999999988898866 666653111 12466677888887531 38999999999999999988
Q ss_pred H
Q psy8894 107 A 107 (306)
Q Consensus 107 ~ 107 (306)
+
T Consensus 112 l 112 (304)
T PLN02256 112 L 112 (304)
T ss_pred h
Confidence 7
No 70
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.17 E-value=0.003 Score=60.58 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=75.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--------cC--CeEEEeeCCCC-----CCcee---------cC-eecc-------C
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--------YG--TKVVGGVSPGK-----GGKTH---------LD-LPVF-------N 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--------~g--~~vv~~VnP~~-----~g~~i---------~G-ip~y-------~ 77 (306)
..+|+|+|+ |+.|+..++.+.+ +| +++++..|.+. .|-.+ .| +.-| .
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 368999999 9999987665544 46 55776655321 01000 00 1111 1
Q ss_pred -CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 78 -TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 78 -sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
+++++....++|++|.+++++.+.+..+++++.|++.|. .+.|.--...+++ .++|++++.++.=.-+.+.=-|
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt-anK~~la~~~~el-~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT-SNKPPIAFHYDEL-LDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE-CCHHHHHhCHHHH-HHHHHHcCCeEEEeccccccCC
Confidence 566776434699999999999999999999999999654 4544211111223 3578889987775544443333
No 71
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.16 E-value=0.0023 Score=58.64 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC----eEEEee-CCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT----KVVGGV-SPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~----~vv~~V-nP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++|++||. |+||....+.|.+.|+ +++ .. |++....+ ..|+.+..+..++.++ .|++++++|++.+.+
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~--aDvVil~v~~~~~~~ 76 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVKS--SDVIILAVKPQVVKD 76 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHhc--CCEEEEEECcHHHHH
Confidence 36999998 9999999999999887 554 45 66531111 2477778888887765 899999999999999
Q ss_pred HHHHHHHc-CC-CEEEEecCCCChhHHH
Q psy8894 103 AIHEALDA-EM-PLIVCITEGIPQLDMV 128 (306)
Q Consensus 103 ~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~ 128 (306)
+++++... .- +.++..+.|.+.++.+
T Consensus 77 vl~~l~~~~~~~~~iIs~~~g~~~~~l~ 104 (266)
T PLN02688 77 VLTELRPLLSKDKLLVSVAAGITLADLQ 104 (266)
T ss_pred HHHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence 99877543 22 3344456787654433
No 72
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.16 E-value=0.0029 Score=58.73 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCCC--ce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKGG--KT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~g--~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
++|++||+ |+||....+.+.+.| .+++ ..|+.... +. ..|+....+..++.++ .|++++++|+....
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~--aDvVilav~p~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLTD--ANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHhc--CCEEEEEeCHHHHH
Confidence 58999998 999999999998877 4443 56654210 11 1367777788887765 89999999999999
Q ss_pred HHHHHHHHc-CC-CEEEEecCCCChhHHHH
Q psy8894 102 KAIHEALDA-EM-PLIVCITEGIPQLDMVK 129 (306)
Q Consensus 102 ~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~ 129 (306)
++++++... .- +.++-+..|++.+.+++
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 999887653 12 34444568987665443
No 73
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.12 E-value=0.003 Score=58.84 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHH-HHH---
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAA-KAI--- 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~-~~~--- 104 (306)
+|+|+|. |+||....+.+.+.|++++ ..|++..-. .-.|.....++.++.++ .|++++++|..... .++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~v~~~~ 76 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTEQ--ADVIFTMVPDSPQVEEVAFGE 76 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHhc--CCEEEEecCCHHHHHHHHcCc
Confidence 4899999 9999999999999999975 667653100 12355566788887776 99999999986443 333
Q ss_pred HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.+... .-..+++-++..+....+++. +.+++.|+.++.+
T Consensus 77 ~~~~~~~~~g~iivd~st~~~~~~~~l~-~~l~~~g~~~~~~ 117 (291)
T TIGR01505 77 NGIIEGAKPGKTLVDMSSISPIESKRFA-KAVKEKGIDYLDA 117 (291)
T ss_pred chHhhcCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCCEEec
Confidence 223332 222344323344444444444 3456778877764
No 74
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.09 E-value=0.0018 Score=62.26 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC-CCceec-------Ce--eccC--CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK-GGKTHL-------DL--PVFN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~-~g~~i~-------Gi--p~y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.+|+|+|+||..|+...+.|.++ ++++++.+.++. .|+.+. +. ..+. +.+++.+ ++|++++|+|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 47999999999999999999887 788776645432 233221 11 0132 3344443 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
..+.+.+.++.++|++. +-.++.|.-+
T Consensus 79 ~~s~~~~~~~~~~G~~V-IDlS~~fR~~ 105 (346)
T TIGR01850 79 GVSAELAPELLAAGVKV-IDLSADFRLK 105 (346)
T ss_pred hHHHHHHHHHHhCCCEE-EeCChhhhcC
Confidence 99999999999999764 4468777533
No 75
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.04 E-value=0.0032 Score=58.55 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|++||+ |+||....+.|.+.|+ .-+...|++.... +..|+..+.+..++..+ .|++++++||..+.++
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~--aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANS--ADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhh--CCEEEEEeChHHHHHH
Confidence 47999999 9999999999998775 2345778754111 12467777778888765 8999999999999999
Q ss_pred HHHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 104 IHEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 104 ~~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
++++... +=+.++-+..|++-+++++.+. ....+-=+-||..
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~---~~~~vvR~MPN~~ 123 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFD---RKLKVIRVMPNTP 123 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC---CCCcEEEECCChH
Confidence 9887642 2234455778998766554321 1123433347764
No 76
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.03 E-value=0.0023 Score=61.30 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC------C---cee-------cCeeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG------G---KTH-------LDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~------g---~~i-------~Gip~y~sl~el~~~~~iDlav 92 (306)
++++|+|+|+ |.+|......|.+.|..+++..+|... + +.. ..+.+..++++..+. .|+++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~--aDlVi 82 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC--ADVVV 82 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--CCEEE
Confidence 4578999999 999999888888887444444443210 0 001 122344566665554 89999
Q ss_pred EecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 93 IYVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+++|+....++++++... .- ..++.++-|+...
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 999999999999988763 22 2466788899653
No 77
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0058 Score=57.61 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..++|+|+|+ |++|+...+.|.+.|+++. ..|++. . .+++++.+. .|++++++|...+.++++.+.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~~--advvi~~vp~~~~~~v~~~l~ 68 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLAD--ADVIVSAVSMKGVRPVAEQVQ 68 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHhc--CCEEEEECChHHHHHHHHHHH
Confidence 3468999999 9999999999999999875 666653 1 467777765 899999999998888888775
Q ss_pred HcC--C-CEEEEecCCCChh
Q psy8894 109 DAE--M-PLIVCITEGIPQL 125 (306)
Q Consensus 109 ~~G--i-~~vvi~t~Gf~e~ 125 (306)
... - ..++..|.|+..+
T Consensus 69 ~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 69 ALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred HhcCCCCcEEEEeCCcccCC
Confidence 422 1 2344456677644
No 78
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.98 E-value=0.0033 Score=57.59 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCCCCC-ce----ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPGKGG-KT----HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~~~g-~~----i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+|++||+ |++|+...+.+.+.|+. .+...|++... ++ ..+...+.+..++..+ .|++++++|++...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~--aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDR--SDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHh--CCEEEEEeCHHHHHHHH
Confidence 6999998 99999999999887764 23455554311 11 2256778888888765 89999999999999988
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHH
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
+++.-..=+.++-+..|.+-+.+++
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~ 103 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLE 103 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHH
Confidence 8762122234555666776555443
No 79
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.0051 Score=59.66 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=65.8
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcC-------Ce-EEEeeCCCCCC-------------ce-e------cCeeccCC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYG-------TK-VVGGVSPGKGG-------------KT-H------LDLPVFNT 78 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g-------~~-vv~~VnP~~~g-------------~~-i------~Gip~y~s 78 (306)
-.++++|+|+|+ |..|++....+.+.| .+ .+|.-|+...+ .. . ..+....+
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 345679999999 999999988887765 45 45555543100 00 1 13334556
Q ss_pred HHhhhhcCCCcEEEEecCchhHHHHHHHHHH--cC--CCEEEEecCCCChh
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAKAIHEALD--AE--MPLIVCITEGIPQL 125 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~~~~e~~~--~G--i~~vvi~t~Gf~e~ 125 (306)
+.++.+. .|++++++|+....++++++.. .- -..++.++-|+..+
T Consensus 87 l~eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 87 LKEAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 7776664 8999999999999999999875 21 12466688999643
No 80
>PLN02712 arogenate dehydrogenase
Probab=96.97 E-value=0.0031 Score=65.76 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..+++++|+|||. |++|+...+.+.+.|++++ +++++.... ...|+..+.+++++... +.|++++++|+....++
T Consensus 48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~v 124 (667)
T PLN02712 48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENV 124 (667)
T ss_pred ccCCCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHH
Confidence 3455788999998 9999999999999999875 566542111 12467777888886532 38999999999999999
Q ss_pred HHHHH
Q psy8894 104 IHEAL 108 (306)
Q Consensus 104 ~~e~~ 108 (306)
+++..
T Consensus 125 l~~l~ 129 (667)
T PLN02712 125 LKSLP 129 (667)
T ss_pred HHhhh
Confidence 98875
No 81
>PLN02712 arogenate dehydrogenase
Probab=96.90 E-value=0.0044 Score=64.65 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.++|+|||+ |++|+...+.+.+.|++++ ++|+....+ ...|+..+.+++++... ..|++++++|+....+++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLKS 444 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHHH
Confidence 5689999998 9999999999999998866 666653111 12466677888887642 38999999999999999998
Q ss_pred HHH
Q psy8894 107 ALD 109 (306)
Q Consensus 107 ~~~ 109 (306)
...
T Consensus 445 l~~ 447 (667)
T PLN02712 445 LPF 447 (667)
T ss_pred HHH
Confidence 764
No 82
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.86 E-value=0.0058 Score=59.63 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec---------CeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL---------DLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~---------Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.++++|+|+||+|..|+...+.|.++ ++++......+..|+.+. ..+.+.+++...- .++|++++++|.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCH
Confidence 46679999999999999999999888 788766554433343321 1111222222111 249999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
..+.+.+..+ +.|++.|- .++-|.
T Consensus 115 ~~s~~i~~~~-~~g~~VID-lSs~fR 138 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVD-LSADFR 138 (381)
T ss_pred HHHHHHHHHH-hCCCEEEE-cCchhc
Confidence 9999999986 77866444 576664
No 83
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.85 E-value=0.005 Score=57.81 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCce--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHHH-
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKT--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIHE- 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~e- 106 (306)
+|++||. |+||....++|.+.|+++. +-.+|+. +. -.|...+.+..++.++ .|++++++|... +.+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~~--advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTEA--SDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHhc--CCEEEEeCCChHHHHHHHcCC
Confidence 6999999 9999999999999999853 3344432 22 2466777888888765 999999999873 3444321
Q ss_pred --HHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 107 --ALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 107 --~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+... .-..+|+-.+..+.....++.+ .+++.|.+++.
T Consensus 77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~-~~~~~G~~~vd 116 (292)
T PRK15059 77 NGCTKASLKGKTIVDMSSISPIETKRFAR-QVNELGGDYLD 116 (292)
T ss_pred cchhccCCCCCEEEECCCCCHHHHHHHHH-HHHHcCCCEEE
Confidence 2221 1123444444455555554443 45777876653
No 84
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.84 E-value=0.002 Score=55.07 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-------CHHhhhhcCCCcEEEEecC-----chhH
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-------TVKEARDATGAEATVIYVP-----PPGA 100 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-------sl~el~~~~~iDlavi~vp-----~~~~ 100 (306)
|+|+|++|..|+...+.|.+.|+++.+.+-....-++..++.+.. ++.+... +.|.++.+++ ...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 789999999999999999999999876653321001122333222 2444444 4999999887 4556
Q ss_pred HHHHHHHHHcCCCEEEEecC
Q psy8894 101 AKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccceeeec
Confidence 77778888899998887664
No 85
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.84 E-value=0.0043 Score=58.91 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
+.+|+|+||+|-.|....+.|.++ .+++++...-.. ..+ ...+++.. ++|++++++|...+.+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 468999999999999999988887 566665433221 222 22233333 3899999999999999999999
Q ss_pred HcCCCEEEEecCCCC
Q psy8894 109 DAEMPLIVCITEGIP 123 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf~ 123 (306)
+.|++. +=.++-|.
T Consensus 72 ~~g~~V-IDlSadfR 85 (313)
T PRK11863 72 NPATRV-IDASTAHR 85 (313)
T ss_pred hCCCEE-EECChhhh
Confidence 999984 44676664
No 86
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.83 E-value=0.006 Score=60.56 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|+|+|++|.+|....+.+.+.|+++. .++++... . ...|+....+..+.... .|++++++|+....+++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~--aDvVIlavp~~~~~~vl~~ 77 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAKD--ADIVIISVPINVTEDVIKE 77 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhcc--CCEEEEecCHHHHHHHHHH
Confidence 3799999779999999999999998854 44443211 1 12366656677776655 8999999999999999988
Q ss_pred HHHc
Q psy8894 107 ALDA 110 (306)
Q Consensus 107 ~~~~ 110 (306)
+...
T Consensus 78 l~~~ 81 (437)
T PRK08655 78 VAPH 81 (437)
T ss_pred HHhh
Confidence 8764
No 87
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.80 E-value=0.011 Score=57.83 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=75.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-ce------------ecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-KT------------HLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~~------------i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
++|.|+|+ |..|+.+...|.+.+ +++. ..+..... .. ..++--.+.+.++..+ .|++|-+.|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINAAP 77 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEeCC
Confidence 68999999 999999998887775 7754 44443200 00 1122223356677766 799999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC---Cceec
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC---PGIIA 152 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc---~Gi~~ 152 (306)
+.....+++.|++.|++.+-+ | +-++... ..++.|++.|+.++ |+| .|+.|
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDt-s--~~~~~~~-~~~~~a~~Agit~v-~~~G~dPGi~n 131 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDT-S--YYEEPPW-KLDEEAKKAGITAV-LGCGFDPGITN 131 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEc-c--cCCchhh-hhhHHHHHcCeEEE-cccCcCcchHH
Confidence 999999999999999997552 3 2233222 23346788887666 554 35555
No 88
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.79 E-value=0.0086 Score=56.20 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHH-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIH- 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~- 105 (306)
++|+|+|. |+||....+++.+.|+++. ..|++.... + -.|.....+..++.+. .|++++++|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~~--aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAAG--AEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHhc--CCEEEEecCCHHHHHHHHcC
Confidence 37999999 9999999999999999864 667654111 1 1366677788888775 899999999985 444442
Q ss_pred --HHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCc
Q psy8894 106 --EALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPG 149 (306)
Q Consensus 106 --e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~G 149 (306)
.+... .- +.++..+++.++ ..+++.+ ..++.|++++ .|-+-|
T Consensus 78 ~~~i~~~l~~g~lvid~sT~~p~-~~~~l~~-~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 78 ENGVCEGLSRDALVIDMSTIHPL-QTDKLIA-DMQAKGFSMMDVPVGRT 124 (296)
T ss_pred cccHhhcCCCCCEEEECCCCCHH-HHHHHHH-HHHHcCCcEEEccCCCC
Confidence 12221 11 234445666543 3344433 3467787655 555433
No 89
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.79 E-value=0.0082 Score=56.00 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=100.2
Q ss_pred EEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH---HHH
Q psy8894 35 CQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI---HEA 107 (306)
Q Consensus 35 VvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~---~e~ 107 (306)
++|. |.||....++|.+.|+++. ..|++.... ...|.....+..++.+. .|++++++|+. .+.+++ +..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAEG--ADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEeCCChHHHHHHHcCcchH
Confidence 4788 9999999999999999864 556653101 12366677788888876 99999999984 456665 444
Q ss_pred HHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc-cCCCceecCccccccCC-CCC-----------CCCCCCEEE
Q psy8894 108 LDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG-PNCPGIIAPEQCKIGIM-PGH-----------IHQRGCVGV 173 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG-PNc~Gi~~~~~~~~~~~-~~~-----------~~~~G~va~ 173 (306)
... .-..+++-.++.+.+..+++. +.+++.|++++. |=+-|..-........+ ... ...-.++=+
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~-~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~ 155 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLA-ELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVH 155 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEe
Confidence 433 223455555666665555544 356778887775 43322211111111100 000 011124555
Q ss_pred EecCh--hhHHHHHHHHHh-CCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 174 VSRSG--TLTYEAVHQTTQ-VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 174 vSqSG--~~~~~~~~~~~~-~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
+.-.| ...-.+.+.... .=.+++..+..+.. .+++..++++.+..-
T Consensus 156 ~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~--~Gld~~~~~~~~~~~ 204 (288)
T TIGR01692 156 CGDHGAGQAAKICNNMLLGISMIGTAEAMALGEK--LGLDPKVLFEIANTS 204 (288)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhcC
Confidence 54433 211111111111 11245556666777 788888888887754
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.005 Score=57.18 Aligned_cols=115 Identities=16% Similarity=0.259 Sum_probs=81.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-C--eEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-T--KVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~--~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|+++|+ |+||+.....+.+.| + +.|...||+..-. +-.|+....+-.++.++ .|++++++.|....++
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~--advv~LavKPq~~~~v 78 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE--ADVVFLAVKPQDLEEV 78 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhh--CCEEEEEeChHhHHHH
Confidence 67999999 999999999999987 2 2444788875211 12355555566666665 8999999999999999
Q ss_pred HHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCCCceecC
Q psy8894 104 IHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc~Gi~~~ 153 (306)
+.++.. ..=+.++-+..|.+-+.+++. +- ...+ |++ ||..-.+.-
T Consensus 79 l~~l~~~~~~~lvISiaAGv~~~~l~~~---l~-~~~vvR~M-PNt~a~vg~ 125 (266)
T COG0345 79 LSKLKPLTKDKLVISIAAGVSIETLERL---LG-GLRVVRVM-PNTPALVGA 125 (266)
T ss_pred HHHhhcccCCCEEEEEeCCCCHHHHHHH---cC-CCceEEeC-CChHHHHcC
Confidence 999975 233456668899987665543 22 3343 544 988755553
No 91
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.77 E-value=0.015 Score=56.72 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=81.1
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC-C----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG-G---------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~-~---------- 235 (306)
..|+|++|+-+|+++...++.+...|....-.+-+|..+ ..-.+.+.|+.+.+||++.+|++.+=+. .
T Consensus 255 l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~ 333 (388)
T PRK00696 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGII 333 (388)
T ss_pred cCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999999999999999988666666665541 3345678899999999999998754321 1
Q ss_pred ---CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 ---GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 ---~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
.. .+|||++.-.| . ..+.....|+++| +...+++++-..++.
T Consensus 334 ~~~~~~~~~kPvv~~~~g-~-------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~ 382 (388)
T PRK00696 334 AAVKEVGVTVPLVVRLEG-T-------------------NVELGKKILAESGLNIIAADTLDDAAQKAV 382 (388)
T ss_pred HHHHhcCCCCcEEEEeCC-C-------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHH
Confidence 12 57999776544 1 1233467799999 889999998766664
No 92
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=96.76 E-value=0.0092 Score=51.58 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCceecCeeccCCHHhhhhc-CCCcEEEEecC-chhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARDA-TGAEATVIYVP-PPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~~-~~iDlavi~vp-~~~~~~~~~e~ 107 (306)
+++|+|+ +..|+..++.|++.|+++++.++.+. .++.+.|+|++.+++++.+. .+.+.+++.++ +..-.++++.+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 4789999 99999999999888999998876542 35678999999887776542 13677888874 45556677777
Q ss_pred HHcCCCEEE
Q psy8894 108 LDAEMPLIV 116 (306)
Q Consensus 108 ~~~Gi~~vv 116 (306)
.+.+++..-
T Consensus 80 ~~~g~~~~~ 88 (201)
T TIGR03570 80 KAKGYRFAT 88 (201)
T ss_pred HhCCCcceE
Confidence 777765543
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=96.75 E-value=0.011 Score=57.67 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=82.9
Q ss_pred CCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C--------
Q psy8894 166 HQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G-------- 235 (306)
Q Consensus 166 ~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~-------- 235 (306)
...|+|++++-+|+++...++.+...|....-++-+|..+ ..-.+.+.++-+.+||++++|++++-+. +
T Consensus 254 ~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i 332 (386)
T TIGR01016 254 ALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGL 332 (386)
T ss_pred ccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3579999999999999999999999998877788776652 3455678899999999999999865421 1
Q ss_pred ----CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 ----GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 ----~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
.. .+|||++.-.|. ..+.....|+++| +...+++++-...+.
T Consensus 333 ~~a~~~~~~~kPvvv~~~g~--------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~ 382 (386)
T TIGR01016 333 VEALKEVGVNVPVVVRLEGT--------------------NVEEGKKILAESGLNIIFATSMEEAAEKAV 382 (386)
T ss_pred HHHHHhcCCCCcEEEEeCCc--------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 12 238997765442 1233467799999 888888887555543
No 94
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.73 E-value=0.0043 Score=59.51 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCceec--C--eeccC-CHHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTHL--D--LPVFN-TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i~--G--ip~y~-sl~el~~~~~iDlavi~vp~~~ 99 (306)
+++.+|+|+||||..|+...+.|.+.++ ++.+..+.+..|+.+. | +++-+ +..++ + ++|++++++|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence 3457899999999999999999986433 4555556655454332 2 11111 12223 3 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 100 AAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+.+.++++.++|++.| =.++-|.
T Consensus 79 s~~~v~~~~~~G~~VI-DlS~~fR 101 (336)
T PRK05671 79 SRSFAEKARAAGCSVI-DLSGALP 101 (336)
T ss_pred HHHHHHHHHHCCCeEE-ECchhhc
Confidence 9999999999999854 4677775
No 95
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.72 E-value=0.0069 Score=58.36 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH-cCCe---EEEeeCCCCCCceec----CeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE-YGTK---VVGGVSPGKGGKTHL----DLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~-~g~~---vv~~VnP~~~g~~i~----Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
.+..+|+|+||+|-.|+...+.|.+ ..|+ +...-..+..|+.+. .+.+.+ +.+++ . ++|+++.++|..
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~ 79 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE 79 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence 3456899999999999999999886 4777 444455555555431 123322 23333 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhH-----HHHHHH-HHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLD-----MVKVKH-RLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~-----~~~~~~-~~ar~~gi~iiGPNc~G 149 (306)
.+.+.+.++.++|++.|= .++-|..+. .-++.. ++....+ .+-.|||.-
T Consensus 80 ~s~~~~~~~~~~G~~VID-~Ss~fR~~~~vplvvPEvN~e~i~~~~~-iIanPnC~t 134 (347)
T PRK06728 80 VSRQFVNQAVSSGAIVID-NTSEYRMAHDVPLVVPEVNAHTLKEHKG-IIAVPNCSA 134 (347)
T ss_pred HHHHHHHHHHHCCCEEEE-CchhhcCCCCCCeEeCCcCHHHHhccCC-EEECCCCHH
Confidence 999999999999976433 566664321 001100 1222235 577899963
No 96
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.68 E-value=0.02 Score=55.08 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--------Ce-EEEeeCC-------------CCCCce-ecC------eeccCCHHhh
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--------TK-VVGGVSP-------------GKGGKT-HLD------LPVFNTVKEA 82 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--------~~-vv~~VnP-------------~~~g~~-i~G------ip~y~sl~el 82 (306)
+|+|+|+ |+.|++....+.+.| .+ .+|..++ .+.... ..| +....+++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999988887767 66 3443311 110010 112 3455678887
Q ss_pred hhcCCCcEEEEecCchhHHHHHHHHHHcC--CCEEEEecCCCChh--H---HHHHHHHHHHhcCC-eEEccCCC
Q psy8894 83 RDATGAEATVIYVPPPGAAKAIHEALDAE--MPLIVCITEGIPQL--D---MVKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~~~~~~e~~~~G--i~~vvi~t~Gf~e~--~---~~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.+. .|++++++|+....++++++...- -+.++..+-|+..+ . .-+..++.. ...+ -+.|||-.
T Consensus 80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A 150 (342)
T TIGR03376 80 AKG--ADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLA 150 (342)
T ss_pred Hhc--CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchH
Confidence 765 899999999999999998876531 23466689999655 2 122222222 2234 46688753
No 97
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.68 E-value=0.011 Score=59.23 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee------cC--eeccCCHHhhhhc-CCCcEEEEecCc-hh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH------LD--LPVFNTVKEARDA-TGAEATVIYVPP-PG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i------~G--ip~y~sl~el~~~-~~iDlavi~vp~-~~ 99 (306)
.+|+|+|. |.||+...++|.+.|+++. ..|.+... ++. .| +..+.+++|+.+. .++|++++++|+ +.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 36999999 9999999999999999964 55654311 011 14 3467789888752 138988888665 56
Q ss_pred HHHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 100 AAKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
+.++++++... .- +.++..++++. .+..++.. .+++.|++.++-.-.|
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~-~dt~~r~~-~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWY-LNTERRIK-RCEEKGILYLGMGVSG 129 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHH-HHHHcCCeEEcCCCCC
Confidence 66777776643 22 33333444543 33344443 4577899888655444
No 98
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.66 E-value=0.0052 Score=58.86 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=63.2
Q ss_pred EEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC----------c------------eecCeeccCCHHhhhhcCCCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG----------K------------THLDLPVFNTVKEARDATGAE 89 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g----------~------------~i~Gip~y~sl~el~~~~~iD 89 (306)
|+|+|+ |+.|+.+.+.+.+. ++++++..++.... + +-.|++++.+++++++. +|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~--vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK--VD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc--CC
Confidence 689999 99999888876654 78888665543210 0 11246777789999865 99
Q ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++.++|........+...++|.|.+++
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEE
Confidence 9999999999999999999999999775
No 99
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.65 E-value=0.0089 Score=58.02 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCChHHHHHH-HHcCCe---EEEeeCCCCCCcee---cC--eeccC--CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQA-IEYGTK---VVGGVSPGKGGKTH---LD--LPVFN--TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l-~~~g~~---vv~~VnP~~~g~~i---~G--ip~y~--sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+|||+||+|-.|+...+.+ .+..|. ++. +.-...|+.. .| ..++. +.+++ . ++|+++.++|.+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence 47999999999999999844 445776 554 3332223322 22 23333 12333 2 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCCChhH----------HHHHHHHHHHhcCC-eEEccCCCce
Q psy8894 100 AAKAIHEALDAEMPLIVC-ITEGIPQLD----------MVKVKHRLIRQSKS-RLIGPNCPGI 150 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi-~t~Gf~e~~----------~~~~~~~~ar~~gi-~iiGPNc~Gi 150 (306)
+.+...++.++|++.+|+ .++-|..++ .+.+. . ..+.|+ .+..|||.-+
T Consensus 78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~-~-~~~~g~~iIanPnC~tt 138 (369)
T PRK06598 78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVID-D-ALANGVKTFVGGNCTVS 138 (369)
T ss_pred HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHH-h-hhhcCCCEEEcCChHHH
Confidence 999999999999874443 455443221 12221 1 224565 5779999633
No 100
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.60 E-value=0.0078 Score=57.91 Aligned_cols=90 Identities=21% Similarity=0.113 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe-eCCCCCCceec---Cee-------------cc-CCHHhhhhcCCCcE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG-VSPGKGGKTHL---DLP-------------VF-NTVKEARDATGAEA 90 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~-VnP~~~g~~i~---Gip-------------~y-~sl~el~~~~~iDl 90 (306)
+.+|+|+|++|..|+...+.|.++ .+++++. .++...|+.+. +.. +- .+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 378999999999999999988887 5577755 45544343332 111 10 023333 2 4899
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+++++|.....+.++++.+.|++.|. .+.-|.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vID-ls~~fR 111 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFS-NASAHR 111 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEE-CCchhc
Confidence 99999999999999999999998544 566553
No 101
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.59 E-value=0.011 Score=54.80 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCc---eecCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGK---THLDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~---~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+|+|||. |.||....+.|.+.|+. .+..+|++.... ...|+. .+.+.+++.+ .|++|+++|+....+++++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aD~Vilavp~~~~~~~~~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKK---CDVIFLAIPVDAIIEILPK 77 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhc---CCEEEEeCcHHHHHHHHHH
Confidence 6999998 99999999999988863 344677653110 113432 3446677643 8999999999999999998
Q ss_pred HHHcCCCEEEEecCCCChhH
Q psy8894 107 ALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
+....-..++ +..|-....
T Consensus 78 l~~l~~~~iv-~d~gs~k~~ 96 (275)
T PRK08507 78 LLDIKENTTI-IDLGSTKAK 96 (275)
T ss_pred HhccCCCCEE-EECccchHH
Confidence 7652223344 455554333
No 102
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.01 Score=56.73 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCC-------------HHhhhhcCCCcEEEEec
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNT-------------VKEARDATGAEATVIYV 95 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~s-------------l~el~~~~~iDlavi~v 95 (306)
..+|+|+|+||-.|....+.|..+ ..++......+..|+.+.. .|++ .+++ +..++|++++++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~--~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSD--VHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHH--hCcccccccccccccCChhhh-hcccCCEEEEec
Confidence 468999999999999999998887 7775433333333443221 1222 2333 222489999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
|...+.+.+.+..+.|++ |+=.|+-|.
T Consensus 79 Phg~s~~~v~~l~~~g~~-VIDLSadfR 105 (349)
T COG0002 79 PHGVSAELVPELLEAGCK-VIDLSADFR 105 (349)
T ss_pred CchhHHHHHHHHHhCCCe-EEECCcccc
Confidence 999999999999999999 455677664
No 103
>PRK06091 membrane protein FdrA; Validated
Probab=96.57 E-value=0.95 Score=46.20 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=132.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEec--CchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYV--PPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~v--p~~~~~~~~ 104 (306)
++-+|++|+.||..+......+.+.|.-+-..|.-... .+++.|+-.-.-|+-+.++.+.++++++. |.+...+-+
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~f 271 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKI 271 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHH
Confidence 47889999999998888777777764433233333210 01233544444456665554678888887 334444433
Q ss_pred -HHHHHcCCCEEEEecCCCChhH-----------HHHHHHHHHHhcC-CeEEccCCCceecCccccccCCCCCCCCCCCE
Q psy8894 105 -HEALDAEMPLIVCITEGIPQLD-----------MVKVKHRLIRQSK-SRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCV 171 (306)
Q Consensus 105 -~e~~~~Gi~~vvi~t~Gf~e~~-----------~~~~~~~~ar~~g-i~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~v 171 (306)
+.+.+.+.+.|+ +-.|-++.. .+++.. ++.... ......+ .+ .+..+.|
T Consensus 272 l~aar~~~KPVVv-lk~Grs~~g~~q~GVi~a~tleEl~~-~A~~la~~~~~~~~--------------~~--~~~~~~i 333 (555)
T PRK06091 272 INAMKATGKPVVA-LFLGYTPAVARDENVWFASTLDEAAR-LACLLSRVTAQRNA--------------IL--PVSQGFI 333 (555)
T ss_pred HHHHhhCCCCEEE-EEecCCchhhhcCCeEEeCCHHHHHH-HHHHHhcccccccc--------------cc--cccCCee
Confidence 333445666555 555655532 222221 222111 1110000 11 1233334
Q ss_pred EEEecChhhHHHHHHHHHhCCCceE---------E-------EEecCCCCCC------CCCH---HHHHHHhhcCCCccE
Q psy8894 172 GVVSRSGTLTYEAVHQTTQVGLGQT---------L-------CVGIGGDPFN------GTNF---IDCLEVFLKDPETKG 226 (306)
Q Consensus 172 a~vSqSG~~~~~~~~~~~~~g~g~s---------~-------~vs~Gn~~~~------dv~~---~d~l~~l~~D~~t~~ 226 (306)
==.---|+++.+.+ .+.....++. . +|-.|-+.|. -+|. .+.+.-.++||+|.+
T Consensus 334 rGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~V 412 (555)
T PRK06091 334 CGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRV 412 (555)
T ss_pred EEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceE
Confidence 33444688998887 5544444433 2 3444443211 1222 345666678999999
Q ss_pred EEEEEee-CC-------------------C--CCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCe
Q psy8894 227 IILIGEI-GG-------------------G--PNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVI 284 (306)
Q Consensus 227 I~ly~E~-~~-------------------~--~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi 284 (306)
|+|-+.- .+ + .+.-+||+.-.|+-.. +.+...-.+.|+++|++
T Consensus 413 illD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D---------------pQ~~~~q~~~L~~aGv~ 477 (555)
T PRK06091 413 LLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD---------------PQCRSQQIATLEDAGIA 477 (555)
T ss_pred EEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC---------------CcCHHHHHHHHHhCCeE
Confidence 9998653 23 1 1224566666676532 12444446899999999
Q ss_pred EeCCHhHHHHHHHHHHH
Q psy8894 285 VTRSPAQMGNELLKEMK 301 (306)
Q Consensus 285 ~~~~~~el~~~~~~~~~ 301 (306)
+++|..+-...+..++.
T Consensus 478 v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 478 VVDSLPEATLLAAALIR 494 (555)
T ss_pred EEcCcHHHHHHHHHHhh
Confidence 99999999888877664
No 104
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.57 E-value=0.016 Score=56.88 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-eeccCCHHhhhhcCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---------------------LD-LPVFNTVKEARDATGA 88 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---------------------~G-ip~y~sl~el~~~~~i 88 (306)
+|+|+|. |.+|......|.+.|++++ ++|++... +.+ .| +....+++++... .
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~--a 77 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD--A 77 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh--C
Confidence 6999999 9999998889999999976 45543210 000 13 4455567776554 8
Q ss_pred cEEEEecCchh----------HHHHHHHHHHc-CCCEEEEecCCCChhHHHHH
Q psy8894 89 EATVIYVPPPG----------AAKAIHEALDA-EMPLIVCITEGIPQLDMVKV 130 (306)
Q Consensus 89 Dlavi~vp~~~----------~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~ 130 (306)
|++++++|... +.++++...+. .-..+++..+.++....+++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l 130 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEV 130 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHH
Confidence 99999999763 55666655542 22334555555544433333
No 105
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.56 E-value=0.0084 Score=56.24 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-----cCeecc--CCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-----LDLPVF--NTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-----~Gip~y--~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++++|+|+ |++|+...+.++.+|+++. .+|++. +.. .|...+ .++.++..+ .|+++.++|......
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~--~~~~~~~~~g~~~~~~~~l~~~l~~--aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSS--ADLARITEMGLIPFPLNKLEEKVAE--IDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHCCCeeecHHHHHHHhcc--CCEEEECCChHHhCH
Confidence 579999999 9999999999999999864 666653 211 233322 345555554 999999998764332
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCc
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPE 154 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~ 154 (306)
-.-+..+.+ ..++.+++.-.+.+. +.||+.|++.+ -|+-.|.+.|.
T Consensus 225 ~~l~~~k~~-aliIDlas~Pg~tdf-----~~Ak~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 225 DVLSKLPKH-AVIIDLASKPGGTDF-----EYAKKRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred HHHhcCCCC-eEEEEeCcCCCCCCH-----HHHHHCCCEEEEeCCCCcccCch
Confidence 211222222 223334543333343 25789998544 68888888764
No 106
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.55 E-value=0.0054 Score=54.48 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
.+|+|||.+|+||+...+.+++.|+.+. + . +.|++++++|.....+++++..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~-~--~~DlVilavPv~~~~~~i~~~~ 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------I-K--KADHAFLSVPIDAALNYIESYD 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------E-C--CCCEEEEeCCHHHHHHHHHHhC
Confidence 3799999999999999999999998863 1 2 3899999999999999998864
No 107
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.55 E-value=0.01 Score=58.73 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCC-CceecCeeccCCHHhhhh---cCCCcEEEEecCchh--
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKG-GKTHLDLPVFNTVKEARD---ATGAEATVIYVPPPG-- 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~-g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~~-- 99 (306)
..+++.|+|+ |..+....+.+++ .|+++++.++++.. +..+.|+|++.+++++++ ++++|.++++.|...
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~ 202 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEA 202 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHH
Confidence 3467999999 7778877787765 37899988886531 235789999988776653 457999999988644
Q ss_pred -HHHHHHHHHHcCCCEEEE
Q psy8894 100 -AAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vvi 117 (306)
..+.+++|.+.|++..++
T Consensus 203 ~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 203 RILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 346888999999985543
No 108
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.54 E-value=0.012 Score=58.86 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--c-----CeeccCCHHhhhhc-CCCcEEEEecCc-hhHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--L-----DLPVFNTVKEARDA-TGAEATVIYVPP-PGAA 101 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~-----Gip~y~sl~el~~~-~~iDlavi~vp~-~~~~ 101 (306)
.|++||. |+||+...++|.+.|++++ ..|++... ++. . ++..+.+++++.+. ..+|++++++|+ +.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 3889999 9999999999999999965 55654310 111 1 25677788887742 248999999999 6677
Q ss_pred HHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 102 KAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 102 ~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
++++++... .- +.++-.++.... +..++.+ .+++.|++.++---.|
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~-~t~~~~~-~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYP-DTERRYK-ELKAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHH-HHHHHHH-HHHhcCCEEEcCCCCC
Confidence 777776653 12 333334443333 3333333 3567788888554444
No 109
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.53 E-value=0.0099 Score=56.35 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.+|+|+|+||-.|....+.|.++ .+++++....+. . ..+ +.+++.++ +|++++++|...+.+.+.++.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~---~~~-~~~~~~~~--~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K---DAA-ERAKLLNA--ADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c---CcC-CHhHhhcC--CCEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999999987 677765433221 0 011 34455444 9999999999999999999989
Q ss_pred cCCCEEEEecCCCC
Q psy8894 110 AEMPLIVCITEGIP 123 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~ 123 (306)
.|++. +=.++-|.
T Consensus 72 ~g~~V-IDlSadfR 84 (310)
T TIGR01851 72 PNTCI-IDASTAYR 84 (310)
T ss_pred CCCEE-EECChHHh
Confidence 99884 44676553
No 110
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.52 E-value=0.018 Score=54.56 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC----------Cce-e------cCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG----------GKT-H------LDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~----------g~~-i------~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
+|+|+|+ |.+|......|.+.|.++. .++++.. +.. . .+++.+.++++.... +.|+++++
T Consensus 2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia 78 (326)
T PRK14620 2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA 78 (326)
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence 6999999 9999999989988888854 4444210 001 1 123355566665421 38999999
Q ss_pred cCchhHHHHHHHHHH-c-C-CCEEEEecCCCCh
Q psy8894 95 VPPPGAAKAIHEALD-A-E-MPLIVCITEGIPQ 124 (306)
Q Consensus 95 vp~~~~~~~~~e~~~-~-G-i~~vvi~t~Gf~e 124 (306)
+|+....++++++.. . + -..+++++.|+..
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999999999876 3 2 2346778899955
No 111
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.52 E-value=0.078 Score=49.76 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCc-eecCeeccC-------CHHhhhhcCCCcEEEEecCch---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGK-THLDLPVFN-------TVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~-~i~Gip~y~-------sl~el~~~~~iDlavi~vp~~--- 98 (306)
++|.|.|++|..|+...+.|.+.|+++.+.+- +..... ...|+.++. ++.++.+ ++|+++-+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 37999999999999999999999999875553 221000 112333321 2344443 489988765421
Q ss_pred ----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2356778888899998876555
No 112
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=96.51 E-value=0.012 Score=58.25 Aligned_cols=89 Identities=15% Similarity=0.239 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCC--CCceecCeeccCCHHhhhh---cCCCcEEEEecCchh--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARD---ATGAEATVIYVPPPG-- 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~~-- 99 (306)
.+++.|+|+ |..+....+.+++ .||++++.++.+. .+.. .|+|++.+++++++ ++++|.++++.|...
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 467999999 7788877887765 3789998886432 2233 78999988776654 467999999988743
Q ss_pred -HHHHHHHHHHcCCCEEEEecCCC
Q psy8894 100 -AAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
..+++++|.+.|++..++ +.+
T Consensus 206 ~~~~ll~~~~~~gv~V~vv--P~~ 227 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLV--PDL 227 (451)
T ss_pred HHHHHHHHHHhcCCEEEEe--Cch
Confidence 567888898999986554 554
No 113
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.49 E-value=0.017 Score=58.18 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e-e-----cCee---ccCCHHhhhhc-CCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T-H-----LDLP---VFNTVKEARDA-TGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~-i-----~Gip---~y~sl~el~~~-~~iDlavi~vp~~~ 99 (306)
.+|++||. |.||+...++|.+.||++. +-|+..... + . .|.. .+.+++|+.+. ..+|++++++|...
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 46999999 9999999999999999965 556653111 1 1 1432 67789998762 23899999999876
Q ss_pred HHH-HHHHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 100 AAK-AIHEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 100 ~~~-~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
+.+ +++.+... ....+++ +++.. .++..++. +.+++.|++.++---.|-
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~-~~~t~~~~-~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEW-YENTERRI-KEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCC-HHHHHHHH-HHHHHcCCeEEeCCCcCC
Confidence 654 44555543 2233443 33333 33344443 346788988886544443
No 114
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.48 E-value=0.0079 Score=55.87 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecC-eeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLD-LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+|+|||. |.+|......+.+.|+++. .++++.... . -.| +....+..+... +.|++++++|+....+++++.
T Consensus 2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~l 77 (279)
T PRK07417 2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQL 77 (279)
T ss_pred eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHHH
Confidence 6999998 9999999999998899864 666653111 1 112 222322223333 389999999999999999888
Q ss_pred HHc-CCCEEEEecCCCC
Q psy8894 108 LDA-EMPLIVCITEGIP 123 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~ 123 (306)
... .-+.++.-+++..
T Consensus 78 ~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 78 IPALPPEAIVTDVGSVK 94 (279)
T ss_pred HHhCCCCcEEEeCcchH
Confidence 764 3344443334443
No 115
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.43 E-value=0.036 Score=53.89 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..++|+|+|..|.||+...+.+.+.|+++. .++++. +.+.+++... .|++++++|.....+++++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~~--aDlVilavP~~~~~~~~~~l~ 163 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILAD--AGMVIVSVPIHLTEEVIARLP 163 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHhc--CCEEEEeCcHHHHHHHHHHHh
Confidence 347899999669999999999999999864 666542 1345666554 899999999999999998876
Q ss_pred HcCCCEEEEecCC
Q psy8894 109 DAEMPLIVCITEG 121 (306)
Q Consensus 109 ~~Gi~~vvi~t~G 121 (306)
...-..+| +..|
T Consensus 164 ~l~~~~iv-~Dv~ 175 (374)
T PRK11199 164 PLPEDCIL-VDLT 175 (374)
T ss_pred CCCCCcEE-EECC
Confidence 64434444 3443
No 116
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.43 E-value=0.017 Score=55.81 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCc-eecCeec----cCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGK-THLDLPV----FNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~-~i~Gip~----y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|||. |.+|....+.+.+.|++ .++..+|+.... .-.+..+ ..++.++..+ .|++++++|+....+++
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--aDlVilavP~~~~~~vl 77 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAE--ADLIVLAVPVDATAALL 77 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcC--CCEEEEeCCHHHHHHHH
Confidence 46999999 99999999999999987 344566653100 0112222 2456666554 99999999999999999
Q ss_pred HHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
++.... .-+.++.-.++....-.+++. +. ...+.+++|-
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK~~i~~~~~-~~-~~~~~~~ig~ 118 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVKGAILAEAE-AL-LGDLIRFVGG 118 (359)
T ss_pred HHHhhcCCCCCcEEEeCccccHHHHHHHH-Hh-cCCCCeEEee
Confidence 888752 333444333444433222221 11 1345577763
No 117
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.42 E-value=0.011 Score=52.68 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Cce--ecCeec----cCCHHhhhhc-CCCcEEEEecC------c
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKT--HLDLPV----FNTVKEARDA-TGAEATVIYVP------P 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~--i~Gip~----y~sl~el~~~-~~iDlavi~vp------~ 97 (306)
|+|+|++|+.|+.+.+.|++.++++.+.+.+... .++ -.|..+ |.+.+++.+. .++|.++++++ .
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 7899999999999999999999998877765420 000 123221 3344444332 36999999998 3
Q ss_pred hhHHHHHHHHHHcCCCEEEEec
Q psy8894 98 PGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
+....+++.|.+.||+.++ ++
T Consensus 81 ~~~~~li~Aa~~agVk~~v-~s 101 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFV-PS 101 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEE-ES
T ss_pred hhhhhHHHhhhccccceEE-EE
Confidence 4667788999999999987 44
No 118
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.41 E-value=0.013 Score=56.33 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--c-CCeEEEeeCCCCCCceec----CeeccCCHHhhh-hcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--Y-GTKVVGGVSPGKGGKTHL----DLPVFNTVKEAR-DATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--~-g~~vv~~VnP~~~g~~i~----Gip~y~sl~el~-~~~~iDlavi~vp~~~~ 100 (306)
+..+|+|+||||-.|....+.|.+ + .+++...-..+..|+.+. .+++. ++++.. . ++|++++++|...+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHHH
Confidence 467899999999999999999988 4 455554444444455432 23333 444442 2 48999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+.++.++|++. +=.++-|.
T Consensus 80 ~~~~~~~~~~g~~V-IDlS~~fR 101 (336)
T PRK08040 80 AAYAEEATNAGCLV-IDSSGLFA 101 (336)
T ss_pred HHHHHHHHHCCCEE-EECChHhc
Confidence 99999999999984 44676664
No 119
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.39 E-value=0.015 Score=54.73 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCce---ecCe--eccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKT---HLDL--PVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~---i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |.+|....+.+.+.|+ ..+..++++....+ -.|. .+..+.++..+. .|++|+++|+....+++
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~--aDvViiavp~~~~~~v~ 83 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKG--ADLVILCVPVGASGAVA 83 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcC--CCEEEECCCHHHHHHHH
Confidence 57999998 9999999999988886 23346676531001 1232 234566666654 99999999999888888
Q ss_pred HHHHHc-CCCEEEEecCCC
Q psy8894 105 HEALDA-EMPLIVCITEGI 122 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf 122 (306)
++.... .-+.+++-..+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHhhCCCCCEEEeCccc
Confidence 776542 333444333343
No 120
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.38 E-value=0.046 Score=51.33 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|++||. |.||.--.++|.+.|+++. .-|.+..- . ...|...+.+..|+.+. .|++|.++|.......+-.
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~-v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~--aDvVitmv~~~~~V~~V~~ 76 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVT-VYNRTPEKAAELLAAAGATVAASPAEAAAE--ADVVITMLPDDAAVRAVLF 76 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEE-EEeCChhhhhHHHHHcCCcccCCHHHHHHh--CCEEEEecCCHHHHHHHHh
Confidence 47999999 9999999999999999954 44443211 1 13488999999888876 9999999998766554432
Q ss_pred ----HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCcc
Q psy8894 107 ----ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPEQ 155 (306)
Q Consensus 107 ----~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~ 155 (306)
..+ .....+||-.+-.+.+...++. +.+++.|++.+ .|=+-|......
T Consensus 77 g~~g~~~~~~~G~i~IDmSTisp~~a~~~a-~~~~~~G~~~lDAPVsGg~~~A~~ 130 (286)
T COG2084 77 GENGLLEGLKPGAIVIDMSTISPETARELA-AALAAKGLEFLDAPVSGGVPGAAA 130 (286)
T ss_pred CccchhhcCCCCCEEEECCCCCHHHHHHHH-HHHHhcCCcEEecCccCCchhhhh
Confidence 333 2234445433334444444443 45678887555 777766665543
No 121
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.38 E-value=0.0057 Score=57.14 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------------------ecC-eeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------------------HLD-LPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------------------i~G-ip~y~sl~el 82 (306)
-++|+|+|+ |.||......+.+.|++++ .+|++....+ ..+ +.+..+.+++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 367999999 9999999999999999875 6666531100 001 2233345443
Q ss_pred hhcCCCcEEEEecC--chhHHHHHHHHHHc-CCCEEEE-ecCCCChhHHH
Q psy8894 83 RDATGAEATVIYVP--PPGAAKAIHEALDA-EMPLIVC-ITEGIPQLDMV 128 (306)
Q Consensus 83 ~~~~~iDlavi~vp--~~~~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~ 128 (306)
+ +.|+++.++| ++.-..++.++.+. .-..+++ -|++++..+++
T Consensus 82 -~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~ 128 (295)
T PLN02545 82 -R--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLA 128 (295)
T ss_pred -C--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 3 3899999999 66666677766553 2233443 47788655543
No 122
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.37 E-value=0.012 Score=52.68 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--------e--cCe--ecc-CCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--------H--LDL--PVF-NTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--------i--~Gi--p~y-~sl~el~~~~~iDlavi~vp 96 (306)
++|+|+|.+|++|+...+.+.+.|++++ ..+++.... . + .|+ .+. .+..+..+. .|++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~--aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR--ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc--CCEEEEECC
Confidence 3699998559999999999999898864 344432000 0 0 121 111 244555554 899999999
Q ss_pred chhHHHHHHHHHHc-CCCEEEEecCCCCh
Q psy8894 97 PPGAAKAIHEALDA-EMPLIVCITEGIPQ 124 (306)
Q Consensus 97 ~~~~~~~~~e~~~~-Gi~~vvi~t~Gf~e 124 (306)
+....++++++... .-+.++-.+.|++.
T Consensus 78 ~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 99999998887542 22555557778764
No 123
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.36 E-value=0.0043 Score=61.47 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-----CCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-----KGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-----~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+.++|+|+|. |..|+....+|+..|.+++.++-+. ..+-+ -.|+++ .+++|+... .|++++.+|...
T Consensus 34 LkgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~--ADvVviLlPDt~ 109 (487)
T PRK05225 34 LKGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQ--ADLVINLTPDKQ 109 (487)
T ss_pred hCCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHh--CCEEEEcCChHH
Confidence 34589999999 9999988889999999976554432 21112 257766 468888765 899999999985
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 100 AAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 100 ~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
...+-++... ..-...+.|+.||.-.... ...-+.-++-++-|-|+|=..
T Consensus 110 q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~---i~~~~dvdVimvAPKgpG~~v 160 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALGYSHGFNIVEVG---EQIRKDITVVMVAPKCPGTEV 160 (487)
T ss_pred HHHHHHHHHhhCCCCCEEEecCCceeeeCc---eeCCCCCcEEEECCCCCCchH
Confidence 3333333332 3556778899999733110 012233445667777777543
No 124
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.35 E-value=0.036 Score=53.92 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..+|+|||.+|.+|....+.|++. +++++ ++|+.. + ...++++...+ .|++++|+|.....+++++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~~--aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQR--ADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhcC--CCEEEEeCCHHHHHHHHHHHh
Confidence 468999999999999999998874 77765 788752 1 12345666554 999999999999999999998
Q ss_pred Hc
Q psy8894 109 DA 110 (306)
Q Consensus 109 ~~ 110 (306)
..
T Consensus 73 ~~ 74 (370)
T PRK08818 73 AL 74 (370)
T ss_pred hh
Confidence 74
No 125
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.33 E-value=0.029 Score=53.61 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCChHHHHHHHH------c--CCeEEEeeCCCCC-----Ccee---------cCeecc--C--CHHhhhhc
Q psy8894 32 KVICQGFTGKQGTFHSKQAIE------Y--GTKVVGGVSPGKG-----GKTH---------LDLPVF--N--TVKEARDA 85 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~------~--g~~vv~~VnP~~~-----g~~i---------~Gip~y--~--sl~el~~~ 85 (306)
+|+|+|+ |+.|+...+.+.+ + ++++++..|.+.. |-.+ ..+..| . +++++.+.
T Consensus 2 rVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 2 RISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred EEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 7999999 9999998887665 2 5667766553310 0000 011223 2 46666543
Q ss_pred CCCcEEEEecCch----hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 86 TGAEATVIYVPPP----GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 86 ~~iDlavi~vp~~----~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
++|++|.++|.. .....+++++++|++.|. ..-|. -...-+.+.++|+++|.++.=--+.|
T Consensus 81 -~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT-aNKga-lA~~~~eL~~lA~~~g~~~~~eatV~ 145 (326)
T PRK06392 81 -KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT-ANKSG-LANHWHDIMDSASKNRRIIRYEATVA 145 (326)
T ss_pred -CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc-CCHHH-HHhhHHHHHHHHHHcCCeEEEeeeee
Confidence 599999999742 256778999999999543 12121 11111233458899987766333343
No 126
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.30 E-value=0.029 Score=53.05 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||.. .+ .|. +.|.+++++..+ .|++++++|...
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~~--aDiv~~~lp~t~ 185 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMKK--SDFVLISLPLTD 185 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHhh--CCEEEECCCCCc
Confidence 4589999999 9999999998888899986 678764 22 233 347899999876 999999999644
No 127
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.29 E-value=0.01 Score=55.70 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee-------cC--------------eeccCCHHhhhhc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH-------LD--------------LPVFNTVKEARDA 85 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i-------~G--------------ip~y~sl~el~~~ 85 (306)
++-++|+|+|+ |.||......+.+.|++++ .++++.... .. .| +....+++++.+.
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG 79 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence 44578999999 9999999888988899865 556543100 00 11 2234456665554
Q ss_pred CCCcEEEEecCchh--HHHHHHHHHHc-CCCEEE-EecCCCChh
Q psy8894 86 TGAEATVIYVPPPG--AAKAIHEALDA-EMPLIV-CITEGIPQL 125 (306)
Q Consensus 86 ~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vv-i~t~Gf~e~ 125 (306)
.|++++++|++. ..+++.++... .-+.++ ..|+|.+-+
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 899999999875 45666665442 223333 356677543
No 128
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.24 E-value=0.032 Score=53.31 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEe-eCCCCCCce---ecC--eeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGG-VSPGKGGKT---HLD--LPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~-VnP~~~g~~---i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|+|++|..|+...+.|.+..| +.+.+ -.++..|++ ..| +++-.+..+.....++|+++.+.+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 6899999999999999998888544 32222 233333443 111 233333333333335999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChh-H---------HHHHHHHHHHhcCCeEEccCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQL-D---------MVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~-~---------~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
...++.++|+-.|= -++-|.-+ | .+.+. +. +++|.-+.+|||.
T Consensus 82 ~~p~~~~~G~~VId-nsSa~Rm~~DVPLVVPeVN~~~l~-~~-~~rg~IianpNCs 134 (334)
T COG0136 82 VEPKAAEAGCVVID-NSSAFRMDPDVPLVVPEVNPEHLI-DY-QKRGFIIANPNCS 134 (334)
T ss_pred HHHHHHHcCCEEEe-CCcccccCCCCCEecCCcCHHHHH-hh-hhCCCEEECCChH
Confidence 99999999944322 34444322 2 12222 22 3355677899996
No 129
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.21 E-value=0.022 Score=55.26 Aligned_cols=118 Identities=11% Similarity=0.008 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCCChHHHHHHH-HcCCeE--EEeeCC-CCCCcee--cCee--ccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI-EYGTKV--VGGVSP-GKGGKTH--LDLP--VFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~-~~g~~v--v~~VnP-~~~g~~i--~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++|||+||+|-.|+...+.|. +..|.+ +.+... +..|+.+ .|.. +. ++++...-.++|+++.+.+.+.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~-~~~~~~~~~~vDivffa~g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ-DAFDIDALKALDIIITCQGGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEE-cCcccccccCCCEEEEcCCHHHHHH
Confidence 479999999999999999888 456651 123333 3323221 1211 11 2222101124999999999999999
Q ss_pred HHHHHHHcCCCEEEE-ecCCCChh-H--------HHHHHHHHHHhcCCe-EEccCCCce
Q psy8894 103 AIHEALDAEMPLIVC-ITEGIPQL-D--------MVKVKHRLIRQSKSR-LIGPNCPGI 150 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi-~t~Gf~e~-~--------~~~~~~~~ar~~gi~-iiGPNc~Gi 150 (306)
....+.++|.+.+|+ -++-|..+ + -.+.+.. .++.|+. +..|||.-+
T Consensus 80 ~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 80 IYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GLNNGIRTFVGGNCTVS 137 (366)
T ss_pred HHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HHhCCcCeEECcCHHHH
Confidence 999999999875555 33344222 1 0112111 1246764 788999533
No 130
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.19 E-value=0.026 Score=54.40 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=64.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCcee--cCe-eccCCH--HhhhhcCCCcEEEEecCc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTH--LDL-PVFNTV--KEARDATGAEATVIYVPP 97 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i--~Gi-p~y~sl--~el~~~~~iDlavi~vp~ 97 (306)
+.+++.+|+|+|++|..|+...+.|.+.++ ++......+..|+.+ .|. ..+.++ +++ . ++|++++++|.
T Consensus 3 ~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~-~--~~D~vf~a~p~ 79 (344)
T PLN02383 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSF-D--GVDIALFSAGG 79 (344)
T ss_pred ccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHH-c--CCCEEEECCCc
Confidence 345678999999999999999999988554 444333343334433 121 122222 233 3 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.+.++.+.|++.| =.++-|.
T Consensus 80 ~~s~~~~~~~~~~g~~VI-DlS~~fR 104 (344)
T PLN02383 80 SISKKFGPIAVDKGAVVV-DNSSAFR 104 (344)
T ss_pred HHHHHHHHHHHhCCCEEE-ECCchhh
Confidence 999999999999998743 3676553
No 131
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.18 E-value=0.022 Score=54.56 Aligned_cols=90 Identities=16% Similarity=0.037 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCcee--cCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTH--LDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i--~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+|+|+|+||..|+...+.|.+.++ ++.+....+..|+.+ .|.. .+.++++..- .++|+++.++|...+.+.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHHH
Confidence 5799999999999999999988554 455555444434443 1211 2222322111 1499999999999999999
Q ss_pred HHHHHcCCCEEEEecCCC
Q psy8894 105 HEALDAEMPLIVCITEGI 122 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf 122 (306)
..+.++|++ |+=.++.|
T Consensus 81 ~~~~~~G~~-VIDlS~~~ 97 (334)
T PRK14874 81 PKAAAAGAV-VIDNSSAF 97 (334)
T ss_pred HHHHhCCCE-EEECCchh
Confidence 999999983 33345544
No 132
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.17 E-value=0.037 Score=54.25 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=79.8
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+|++++-.++++...++++...|....-++-+|..+ ..-.+.+.++-+.+||++++|++.+-+. +
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999998777777776652 3455788899999999999999764421 1
Q ss_pred ---CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q psy8894 236 ---GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300 (306)
Q Consensus 236 ---~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~ 300 (306)
.. .+|||++.-.|. ..+.....|+++|+. +...++|-++++...
T Consensus 334 ~a~~~~~~~kPvvv~l~G~--------------------~~e~~~~iL~~~Gip-vf~~~~~~~a~~~~v 382 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAGT--------------------NVEEGRKILAESGLP-IITADTLAEAAEKAV 382 (392)
T ss_pred HHHHhcCCCCcEEEEcCCC--------------------CHHHHHHHHHHcCCC-eeecCCHHHHHHHHH
Confidence 12 578997654442 223346779999953 234445555555433
No 133
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.17 E-value=0.021 Score=54.52 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCC-----------------------Cc--eecC--eecc--CC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKG-----------------------GK--THLD--LPVF--NT 78 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~-----------------------g~--~i~G--ip~y--~s 78 (306)
+|+|+|+ |+.|+.+.+.+.+. ++++++..+.... ++ .+.| ++++ ++
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 5899999 99999999988765 3888754332110 01 0123 3444 25
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++= +.++|+++.|++.....+.+..++++|.+.|++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 777763 246999999999999999999999999998775
No 134
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.13 E-value=0.019 Score=55.06 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeC-CCCCCceec---Ceecc-------C-----CHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVS-PGKGGKTHL---DLPVF-------N-----TVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~Vn-P~~~g~~i~---Gip~y-------~-----sl~el~~~~~iDlavi 93 (306)
.+|+|+|++|.+|+...+.+.++. +++++.+. ....|+.+. ....| . ++++.. ..++|++++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVA-SKDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHH-hccCCEEEE
Confidence 379999999999999999888864 78876643 222233322 11111 1 111111 125999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
++|...+.+..+++.+.|++. +..+.-|.
T Consensus 80 a~p~~~s~~~~~~~~~~G~~V-IDlsg~fR 108 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPV-FSNASNHR 108 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEE-EECChhhc
Confidence 999999999999999999985 44565553
No 135
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.0079 Score=56.05 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee--------------------------cCeeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH--------------------------LDLPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i--------------------------~Gip~y~sl~el~ 83 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...- .. ..+....++++..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999999 9999998889988999865 555542100 00 0133455676666
Q ss_pred hcCCCcEEEEecCchhHH--HHHHHHHHcCC-CEEE-EecCCCChhHHH
Q psy8894 84 DATGAEATVIYVPPPGAA--KAIHEALDAEM-PLIV-CITEGIPQLDMV 128 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~--~~~~e~~~~Gi-~~vv-i~t~Gf~e~~~~ 128 (306)
+. .|+++.++|.+... .++.++.+.-- ..++ +-++.++.+++.
T Consensus 80 ~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~ 126 (288)
T PRK09260 80 AD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA 126 (288)
T ss_pred cC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 54 99999999987642 44445443221 2223 335566655443
No 136
>PLN03139 formate dehydrogenase; Provisional
Probab=96.10 E-value=0.048 Score=53.36 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+..+.+++++..+ .|++++++|- +.+..++
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLPK--CDVVVINTPLTEKTRGMF 273 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHhh--CCEEEEeCCCCHHHHHHh
Confidence 4578999999 9999999999999999976 567653111 23466666789999876 9999999995 3444444
No 137
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=96.09 E-value=0.028 Score=56.43 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCch---hH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPP---GA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~---~~ 100 (306)
.++++|+|+ |..|+...+.+++. |+++++.+|++.....+.|+|++.+.+++. .++.+|+ +++.|.. ..
T Consensus 146 ~rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r 223 (476)
T PRK15204 146 KKKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKT 223 (476)
T ss_pred CCeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHH
Confidence 367999999 88888888888764 899998898764345688999998876552 2234675 7787743 34
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.+.+++|.+.|++.+.+ .+.+
T Consensus 224 ~~il~~l~~~gv~~V~v-IP~l 244 (476)
T PRK15204 224 HFWLRELSKHHCRSVTV-VPSF 244 (476)
T ss_pred HHHHHHHhhcCCeEEEE-eCCc
Confidence 57889998889875553 3443
No 138
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.08 E-value=0.032 Score=47.31 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCC--------cee-----------------cCe--ecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGG--------KTH-----------------LDL--PVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g--------~~i-----------------~Gi--p~y--~sl~ 80 (306)
.+|+|+|+ |++|+.+.+.+.+ .++++++..++.... +.. .|. +++ .+.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 37999999 9999999887775 488888766652100 111 121 111 2344
Q ss_pred hhh-hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EAR-DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~-~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++| .+.++|+++.|+..-...+.++.-++.|+|.|++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 444 2235788888877666677777777788888775
No 139
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=96.07 E-value=0.025 Score=56.20 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCC--CCCceecCeeccCCHHhhh---hcCCCcEEEEecCc---h
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPG--KGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPP---P 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~--~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~---~ 98 (306)
.++++|+|+ |..++...+.+++ .||++++.++++ ..+..+.|+|++.+ +++. .++++|.++++.|. +
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHH
Confidence 467999999 7778877777764 489999888754 23456789999976 5553 34579999998883 4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
...+.+++|.+.|+..+.+ -+.+
T Consensus 203 ~~~~ll~~l~~~~v~~V~~-vP~~ 225 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLI-VPSL 225 (456)
T ss_pred HHHHHHHHHHhCCCeEEEE-eCcc
Confidence 4567788888888843432 3544
No 140
>PRK07574 formate dehydrogenase; Provisional
Probab=96.06 E-value=0.052 Score=53.11 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+..+.+++++... .|++++++|-.. +..++
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLF 266 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhhc--CCEEEEcCCCCHHHHHHh
Confidence 478999999 9999999999999999976 677653111 12366667899999876 999999999533 34444
No 141
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.01 E-value=0.031 Score=53.42 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHH-HHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQA-IEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l-~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~--~ 105 (306)
..++|+|+|+ |++|+...+.+ ..+|++++ ..||........++....+++++... .|++++++|.......+ +
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVEG--ADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHHh--CCEEEEeCCCCcchhhhcCH
Confidence 3578999999 99999998888 55688875 67876421111233444589998876 99999999976554444 2
Q ss_pred HHHH-cCCC-EEEEecCCCC
Q psy8894 106 EALD-AEMP-LIVCITEGIP 123 (306)
Q Consensus 106 e~~~-~Gi~-~vvi~t~Gf~ 123 (306)
+..+ ..-. .+++.+.|..
T Consensus 221 ~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred HHHhcCCCCcEEEECCCCcc
Confidence 2222 2222 3444566653
No 142
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.00 E-value=0.034 Score=54.27 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|||. |++|+...+.+..+|++++ ..||.. ....+..-|.+++++..+ .|++++.+|-.
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~~--aDiV~lh~Plt 178 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILEE--CDVISLHTPLT 178 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHhh--CCEEEEeCcCC
Confidence 3578999999 9999999999999999986 668754 222232346789999876 99999999953
No 143
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.96 E-value=0.036 Score=50.93 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCC-ceecCee-ccCCHHhhhhc-------CC-CcEEEEecCc---
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGG-KTHLDLP-VFNTVKEARDA-------TG-AEATVIYVPP--- 97 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g-~~i~Gip-~y~sl~el~~~-------~~-iDlavi~vp~--- 97 (306)
+|+|+|++|..|+...+.|.+.|+++.+.+ +|.... ..+..++ -|.+.+.+.+. .+ +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 489999999999999999999999976554 343210 1111111 22333333221 24 7888877663
Q ss_pred --hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.....+++.|.+.|++.++..++
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEeec
Confidence 34556788899999999886553
No 144
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.95 E-value=0.031 Score=55.88 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCch---hH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPP---GA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~---~~ 100 (306)
.+++.|+|+ |..|....+.+++. |+++++.+|.+.. .-.++|++.++++++ +++++|-++++.|.. ..
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~--~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l 219 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP--GGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARV 219 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc--ccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHH
Confidence 467999999 88888888887663 8899988876531 112345588766654 346799999998754 34
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy8894 101 AKAIHEALDAEMPLIVC 117 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi 117 (306)
.+++++|.+.+++..++
T Consensus 220 ~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 220 KKLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHHcCCeEEEe
Confidence 56788888889986554
No 145
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.89 E-value=0.1 Score=50.28 Aligned_cols=93 Identities=6% Similarity=0.000 Sum_probs=59.5
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---cCeecc-CC------HHhhhhcCCCcEEEEe
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---LDLPVF-NT------VKEARDATGAEATVIY 94 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---~Gip~y-~s------l~el~~~~~iDlavi~ 94 (306)
.++++.++|.|.|++|-.|+...+.|.+.|+++++...... .... .+...+ .+ +.++.. ++|.++-+
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~ 92 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN-EHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNL 92 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc-cccccccccceEEECCCCCHHHHHHHHh--CCCEEEEc
Confidence 35667899999999999999999999999999875432211 0000 011111 12 233333 38988876
Q ss_pred cCc-------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPP-------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~-------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
... .....+++.|.+.+++.++.+++
T Consensus 93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 521 12345778788889988876665
No 146
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.81 E-value=0.039 Score=51.16 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCee-----------ccCCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLP-----------VFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip-----------~y~sl~el~~~~~iDlavi~vp 96 (306)
++|+|+|+ |.+|......|.+.|.++. .++++... +. ..|+. ...+.+++ + ++|+++++++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVK 75 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEecc
Confidence 36999999 9999998888888898865 44432100 11 11322 23345554 3 4999999999
Q ss_pred chhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 97 PPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 97 ~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+..+.++++++... +- ..++.++.|+...
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 76 AYQLPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred cccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 99999998888763 33 2566678898633
No 147
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.81 E-value=0.0082 Score=52.11 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
...++|+|+|. |+.|+.+.+.++.+|++++ ..||.....+ ..++ -|.+++|+... .|++++++|.
T Consensus 34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~~--aDiv~~~~pl 101 (178)
T PF02826_consen 34 LRGKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLAQ--ADIVSLHLPL 101 (178)
T ss_dssp STTSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHHH---SEEEE-SSS
T ss_pred cCCCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcch--hhhhhhhhcc
Confidence 34689999999 9999999999999999986 7787752111 2244 45689999987 9999999984
No 148
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.035 Score=56.30 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC--CCCceecCeeccCCH--HhhhhcCCCcEEEEecCc---hhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG--KGGKTHLDLPVFNTV--KEARDATGAEATVIYVPP---PGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~--~~g~~i~Gip~y~sl--~el~~~~~iDlavi~vp~---~~~ 100 (306)
+.+++.|+|| |..|....+.++.. .|..++.+|+. ..|.++.|+|+|.++ .++.++..+|.++++.|. +..
T Consensus 115 ~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~~ 193 (588)
T COG1086 115 NRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEER 193 (588)
T ss_pred CCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHHH
Confidence 3578999999 99999888888875 68888888864 456789999999875 444556678988888775 455
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy8894 101 AKAIHEALDAEMPLIVC 117 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi 117 (306)
.+.++.|.+.|++.-.+
T Consensus 194 ~~i~~~l~~~~~~v~~l 210 (588)
T COG1086 194 RRILLRLARTGIAVRIL 210 (588)
T ss_pred HHHHHHHHhcCCcEEec
Confidence 66888898888775443
No 149
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.76 E-value=0.023 Score=55.08 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=51.8
Q ss_pred EEEEcCCCCCChHHHHHHHHc-CC-eE-EEeeCCCC--------CCceec----CeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEY-GT-KV-VGGVSPGK--------GGKTHL----DLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~-g~-~v-v~~VnP~~--------~g~~i~----Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
|.|+|+ |.+|+.+.+.|.+. .+ ++ ++.-|+.. .+..+. ++.-..+|.++..+ .|++|-|+|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEECCcc
Confidence 689999 99999999998887 45 43 33333322 001111 11111235666655 8999999999
Q ss_pred hhHHHHHHHHHHcCCCEEE
Q psy8894 98 PGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vv 116 (306)
.....+++.|++.|++.+=
T Consensus 78 ~~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD 96 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE
T ss_pred chhHHHHHHHHHhCCCeec
Confidence 9999999999999999754
No 150
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=95.76 E-value=0.022 Score=47.90 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCC--CCceecCeeccCCHHhhhh---cCCCcEEEEecCch--
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARD---ATGAEATVIYVPPP-- 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~-- 98 (306)
+.++..++|. +..+....+.+++ .|+++++.++++. .++++.|+|+..+++++++ ++++|-++++.|.+
T Consensus 76 ~~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~ 154 (175)
T PF13727_consen 76 SGRNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEE 154 (175)
T ss_dssp --EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-H
T ss_pred hccceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCH
Confidence 3455567775 5556666676666 4999988887654 2356789999988777765 45799999997764
Q ss_pred -hHHHHHHHHHHcCCCEEE
Q psy8894 99 -GAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 99 -~~~~~~~e~~~~Gi~~vv 116 (306)
...+++++|-+.|++.-+
T Consensus 155 ~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 155 EQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 456678888888887543
No 151
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.74 E-value=0.018 Score=55.00 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--ceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--KTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
-+++.|+|+ |+.|+.+.+.++.+|++++ ..||.... ....+..-..+|+++..+ .|++++.+|- +.+..++
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLI 215 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHhh--CCEEEEcCCCCcchhccc
Confidence 589999999 9999999999999999987 77883211 123445555789999987 9999999886 4444444
No 152
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.74 E-value=0.021 Score=55.64 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|||. |++|+...+.+..+|++++ ..||.. .+......|.+++++..+ .|++++.+|-.
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~~--sDiI~lh~PLt 178 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQE--ADILTFHTPLF 178 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 4689999999 9999999999999999987 678754 221111246789999876 89999998843
No 153
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.68 E-value=0.081 Score=50.25 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee---ccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP---VFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip---~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
+-++|+|+|. |++|+...+.++.+|++++ .+++.. +...+.. -+.+++++..+ .|++++++|... +..++
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLSQ--TRVLINLLPNTPETVGII 208 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHhc--CCEEEECCCCCHHHHHHh
Confidence 3579999999 9999999999999999976 677653 2222222 23578888876 999999999643 34444
No 154
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.67 E-value=0.021 Score=52.98 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---------------e------------cCeeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---------------H------------LDLPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---------------i------------~Gip~y~sl~el~ 83 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...-+ . .++....+++++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~- 80 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL- 80 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 57999999 9999998888988899865 5554421010 0 123344556554
Q ss_pred hcCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEE-EecCCCChhHH
Q psy8894 84 DATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIV-CITEGIPQLDM 127 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vv-i~t~Gf~e~~~ 127 (306)
+ +.|++++++|++.. .++++++.+. .-..++ .-|+|++.+++
T Consensus 81 ~--~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~l 126 (282)
T PRK05808 81 K--DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITEL 126 (282)
T ss_pred c--cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 3 38999999997555 6777776653 223344 33556655443
No 155
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.66 E-value=0.026 Score=54.18 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEE---eeCCCCCCcee--cCee-ccCCH--HhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVG---GVSPGKGGKTH--LDLP-VFNTV--KEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~---~VnP~~~g~~i--~Gip-~y~sl--~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+|+||||..|+...+.|.+.++..+. ....+..|+.+ .|.. .+.++ .++ . ++|++++++|...+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHH
Confidence 5899999999999999999886665322 22333334433 2221 22222 233 2 49999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCC
Q psy8894 104 IHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf 122 (306)
+.++.++|++ ++=.++-|
T Consensus 78 a~~~~~~G~~-VID~ss~~ 95 (339)
T TIGR01296 78 APKAAKCGAI-VIDNTSAF 95 (339)
T ss_pred HHHHHHCCCE-EEECCHHH
Confidence 9999999985 33245444
No 156
>PLN02858 fructose-bisphosphate aldolase
Probab=95.64 E-value=0.067 Score=60.24 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcCCCcEEEEecC-chhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDATGAEATVIYVP-PPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~~iDlavi~vp-~~~~~~~~ 104 (306)
..++|++||. |+||....++|.+.|+++. +.|+.... + .-.|.....+..++.+. .|++++++| ++.+.+++
T Consensus 323 ~~~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~--aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 323 PVKRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAKD--VDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCCeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEecCChHHHHHHH
Confidence 3578999999 9999999999999999864 55654310 1 11355567788888876 999999999 56666665
Q ss_pred H---HHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHh--cCCeEE-ccCCCcee
Q psy8894 105 H---EALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQ--SKSRLI-GPNCPGII 151 (306)
Q Consensus 105 ~---e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~--~gi~ii-GPNc~Gi~ 151 (306)
. .+++. .. +.++.+|+.. ....+++.+ .+++ .|++++ .|=+-|..
T Consensus 399 ~g~~g~~~~l~~g~ivVd~STvs-P~~~~~la~-~l~~~g~g~~~lDAPVsGg~~ 451 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVLSSTVS-PGFVIQLER-RLENEGRDIKLVDAPVSGGVK 451 (1378)
T ss_pred hchhhHHhcCCCCCEEEECCCCC-HHHHHHHHH-HHHhhCCCcEEEEccCCCChh
Confidence 2 23332 12 3344455544 333344433 3455 777665 56544433
No 157
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.61 E-value=0.054 Score=57.00 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCc---eecCee--ccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGK---THLDLP--VFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~---~i~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |++|....+.+.+.|+ ..|..+|++.... ...|.. ...++.+..+. .|++++++|+....+++
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~--aDvVilavp~~~~~~vl 80 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSG--ADVIVLAVPVLAMEKVL 80 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcC--CCEEEECCCHHHHHHHH
Confidence 67999998 9999999999998885 2244677764111 112432 33456666654 89999999999999998
Q ss_pred HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+++... .-+.++.-.++....-.+++. +......+|++
T Consensus 81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~-~~~~~~~~r~~ 119 (735)
T PRK14806 81 ADLKPLLSEHAIVTDVGSTKGNVVDAAR-AVFGELPAGFV 119 (735)
T ss_pred HHHHHhcCCCcEEEEcCCCchHHHHHHH-HhccccCCeEE
Confidence 887753 233344434555433333332 22222345655
No 158
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.55 E-value=0.084 Score=50.55 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|.+ +.+++++..+ .|++++++|... +..++
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 4589999999 9999999999999999976 677753111 122433 4579998876 899999999643 34444
No 159
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.54 E-value=0.084 Score=50.52 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+-++|+|+|. |++|+...+.+..+|++++ ..|+... ..........+++++.+. .|++++++|...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDiVil~lP~t~ 210 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIKD--ADIISLHVPANK 210 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHhc--CCEEEEeCCCcH
Confidence 3468999999 9999999999999999976 5666541 111122333478998876 999999999754
No 160
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.54 E-value=0.045 Score=55.19 Aligned_cols=93 Identities=23% Similarity=0.179 Sum_probs=59.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e---------------------cC-eeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H---------------------LD-LPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i---------------------~G-ip~y~sl~el~~~~~ 87 (306)
++|+|||+ |.||......+.+.|+++. ..|+.....+ + .| +....+++++.+.
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~-- 80 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG-- 80 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC--
Confidence 57999999 9999999999999999865 5666531100 0 12 4556678777655
Q ss_pred CcEEEEecCchhH--HHHHHHHHHc-CCC-EEEEecCCCChhHH
Q psy8894 88 AEATVIYVPPPGA--AKAIHEALDA-EMP-LIVCITEGIPQLDM 127 (306)
Q Consensus 88 iDlavi~vp~~~~--~~~~~e~~~~-Gi~-~vvi~t~Gf~e~~~ 127 (306)
.|+++.++|.... ..++.++.+. .-+ .+..-|+|++.+++
T Consensus 81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l 124 (495)
T PRK07531 81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL 124 (495)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 9999999998852 2233443222 112 23335567765543
No 161
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.47 E-value=0.075 Score=50.48 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~--~ 105 (306)
+-++++|+|. |+.|+.+.+.++.+|++++ .+++.. ...... -|.+++++..+ .|++++++|- +.+..++ +
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~~--sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLKQ--ADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHHh--CCEEEEcCCCChHHhcccCHH
Confidence 3579999999 9999999999999999987 467653 111111 26789999876 9999999984 3333433 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
+....+-.+++ +..+
T Consensus 219 ~l~~mk~ga~l-IN~a 233 (314)
T PRK06932 219 TLALMKPTAFL-INTG 233 (314)
T ss_pred HHHhCCCCeEE-EECC
Confidence 33334444443 3443
No 162
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.46 E-value=0.1 Score=46.02 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCceecCe-----eccC--CHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTHLDL-----PVFN--TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i~Gi-----p~y~--sl~el~~~~~iDlavi~vp~~ 98 (306)
++|||+||||+.|+...+...+.|.++.+.| ||... ....++ .+|. ++++... +.|++|......
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccCC
Confidence 4799999999999999999999999988775 44431 111333 3343 2223333 489999865443
No 163
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.44 E-value=0.027 Score=52.53 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--e------------cC-------------eeccCCHHh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--H------------LD-------------LPVFNTVKE 81 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i------------~G-------------ip~y~sl~e 81 (306)
+.++|+|+|+ |.||......+.+.|++++ .+|++....+ . .| +....++++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 3478999999 9999999889998999865 4454320000 0 12 234455655
Q ss_pred hhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChh
Q psy8894 82 ARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQL 125 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~ 125 (306)
+ + +.|+++.++|.+. -..+++++... .-..+++ -|++++..
T Consensus 81 ~-~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 81 L-A--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred h-c--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 4 3 3899999998753 23445554433 2223443 46677644
No 164
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.44 E-value=0.024 Score=47.23 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCe----eccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDL----PVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gi----p~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.++|+|+|+ |.+|+...+.+.+.|...+..+|++... ++ ..+. ..+.+.+++.++ +|++|.++|+...
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~ 94 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE--ADLIINTTPVGMK 94 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc--CCEEEeCcCCCCC
Confidence 3678999999 9999999999988864434466665311 11 1122 134456665544 9999999999875
Q ss_pred --H--HHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 101 --A--KAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 101 --~--~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
. ...+.+++.|.. ++-.++- ++.. ++. +.+++.|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~-v~D~~~~-~~~~--~l~-~~~~~~g~~~v~ 137 (155)
T cd01065 95 PGDELPLPPSLLKPGGV-VYDVVYN-PLET--PLL-KEARALGAKTID 137 (155)
T ss_pred CCCCCCCCHHHcCCCCE-EEEcCcC-CCCC--HHH-HHHHHCCCceeC
Confidence 1 122334444432 3333332 2221 333 356788887663
No 165
>KOG2380|consensus
Probab=95.44 E-value=0.023 Score=54.36 Aligned_cols=121 Identities=10% Similarity=0.141 Sum_probs=81.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+..+..+.+|+|+|. |+||+...+.+.+.|..+++---+.+.. .+-.|..-|..+.|+.++ ++|++++||.......
T Consensus 46 ~~~~k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiek 123 (480)
T KOG2380|consen 46 IEQWKATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEK 123 (480)
T ss_pred hhhcccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHH
Confidence 346777899999999 9999999999999999876433333310 123477888999998875 7999999999988888
Q ss_pred HHHHHHH--cCCCEEEEecCCCChhHHHHHHHHHHHhcCC----eEEccC
Q psy8894 103 AIHEALD--AEMPLIVCITEGIPQLDMVKVKHRLIRQSKS----RLIGPN 146 (306)
Q Consensus 103 ~~~e~~~--~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi----~iiGPN 146 (306)
+++-..= ..+..++.-..-..|.+.+..++-+-++-++ .+-||.
T Consensus 124 ilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk 173 (480)
T KOG2380|consen 124 ILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK 173 (480)
T ss_pred HHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC
Confidence 8876542 3344555433333344444333333444443 345776
No 166
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.43 E-value=0.088 Score=49.91 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~--~ 105 (306)
.-++++|+|. |+.|+.+.+.++.+|++++ ..||... ....+++ |.+++++..+ .|++++.+|-. .+..++ +
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLKT--SDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhhc--CCEEEEeCCCCchhhcccCHH
Confidence 3589999999 9999999999999999987 6787531 2223443 5689999886 89999999853 333333 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
+....+-.+++ +..+
T Consensus 218 ~~~~Mk~~a~l-IN~a 232 (311)
T PRK08410 218 ELKLLKDGAIL-INVG 232 (311)
T ss_pred HHHhCCCCeEE-EECC
Confidence 33344544444 3443
No 167
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.37 E-value=0.065 Score=54.48 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||....+ ...|++.+.+++++... .|++++++|.. .+..++
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li 211 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLAR--ADFITVHTPLTPETRGLI 211 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHhh--CCEEEEccCCChhhccCc
Confidence 478999999 9999999999999999976 678742111 23466656689999876 99999999964 344444
No 168
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.094 Score=49.08 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeE-EEeeCCCCCCc---eecCee-cc-CCH-HhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKV-VGGVSPGKGGK---THLDLP-VF-NTV-KEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~v-v~~VnP~~~g~---~i~Gip-~y-~sl-~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++|+|+|. |.+|+...+.+++.|+.+ +.+.++..... ...|+. .+ .+. .+... ..|++|++||-..+.+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 468999998 999999999999999985 66788765211 112321 22 222 22222 3799999999999999
Q ss_pred HHHHHHH-cCCCEEEE
Q psy8894 103 AIHEALD-AEMPLIVC 117 (306)
Q Consensus 103 ~~~e~~~-~Gi~~vvi 117 (306)
++++... .....+|.
T Consensus 80 ~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 80 VLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHhcccCCCCCEEE
Confidence 9999985 45555443
No 169
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.26 E-value=0.16 Score=50.06 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccC-CHHhhhh-------------cCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFN-TVKEARD-------------ATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~-sl~el~~-------------~~~iDlav 92 (306)
.++|+|+|. |.+|......|.+.|++++ ++|.+...- . ....|++. .++++.. ..+.|+++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 368999999 9999988899999999976 555443101 1 12344443 3444421 01489999
Q ss_pred EecCc----------hhHHHHHHHHHHc-CCCEEEEecCCCC
Q psy8894 93 IYVPP----------PGAAKAIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 93 i~vp~----------~~~~~~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
+|+|. +.+.++++..... .-..+|+..+..+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 99998 4666666666553 2233444444443
No 170
>PLN00016 RNA-binding protein; Provisional
Probab=95.26 E-value=0.11 Score=50.17 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=60.4
Q ss_pred CcEEEEE----cCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----------e--ecCeec-cCCHHhh---hhcCCC
Q psy8894 30 KSKVICQ----GFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----------T--HLDLPV-FNTVKEA---RDATGA 88 (306)
Q Consensus 30 ~~~VaVv----Gasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----------~--i~Gip~-y~sl~el---~~~~~i 88 (306)
+++|+|+ |++|..|+...+.|.+.|+++++......... + ..|+.. ..++.++ ....++
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~ 131 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGF 131 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCc
Confidence 4689999 99999999999999999999875443221000 0 123332 2355543 222358
Q ss_pred cEEEEecCc--hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 89 EATVIYVPP--PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 89 Dlavi~vp~--~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|+++.+... ..+..+++.|.+.|++.++.+++
T Consensus 132 d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 132 DVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 988876532 34667888888899988776554
No 171
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.21 E-value=0.14 Score=47.57 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-C------CCceec---C-----eeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-K------GGKTHL---D-----LPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-~------~g~~i~---G-----ip~y~sl~el~~~~~iDlavi~v 95 (306)
++|+|+|+ |.+|......|.+.|.++. .+++. . .|-.+. + .+...+.+++.+ ++|++++++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEe
Confidence 37999999 9999998888888888754 33331 1 011111 0 112334555544 389999999
Q ss_pred CchhHHHHHHHHHHc-CC-CEEEEecCCCCh
Q psy8894 96 PPPGAAKAIHEALDA-EM-PLIVCITEGIPQ 124 (306)
Q Consensus 96 p~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e 124 (306)
|+....++++++... .- ..++.++.|+..
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 999999999888763 22 335556778853
No 172
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=95.18 E-value=0.066 Score=53.10 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCchhHH--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPPGAA-- 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~~~~-- 101 (306)
.+++.|+|+ |..+....+.+.+ .|+++++.++.......+.|+|++.++++++ +++++|-++++.|.....
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~ 202 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLP 202 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchH
Confidence 467999999 7777666444433 3899998884322123678899998766654 456799999999865432
Q ss_pred -HHHHHHHHcCCCEEE
Q psy8894 102 -KAIHEALDAEMPLIV 116 (306)
Q Consensus 102 -~~~~e~~~~Gi~~vv 116 (306)
+.+++|.+.|++..+
T Consensus 203 ~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 203 VDELLECKLSGIEVVD 218 (442)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 357888888888544
No 173
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.09 E-value=0.044 Score=46.66 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecCee--cc--CCHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK--------------------------THLDLP--VF--NTVK 80 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~--------------------------~i~Gip--~y--~sl~ 80 (306)
||+|-|+ |+.||.+.+.+... ++++++.-+|...-+ .+.|.+ ++ .+.+
T Consensus 2 kVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~ 80 (151)
T PF00044_consen 2 KVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE 80 (151)
T ss_dssp EEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG
T ss_pred EEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhhc
Confidence 7999999 99999999887754 888887655652100 123432 22 2455
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++|= +.++|+++.|++.-...+..+.-++.|+|.|++
T Consensus 81 ~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 81 EIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred ccccccccccEEEeccccceecccccccccccccceee
Confidence 5552 246999999999999999999999999999886
No 174
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.04 E-value=0.17 Score=49.80 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.-++++|+|. |+.|+...+.+..+|++++ ..||... ....+..-+.+++++... .|++++.+|-. .+..++
T Consensus 150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--sDiVslh~Plt~~T~~li 221 (409)
T PRK11790 150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLAQ--SDVVSLHVPETPSTKNMI 221 (409)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHhh--CCEEEEcCCCChHHhhcc
Confidence 3589999999 9999999999999999986 6777531 122234434589999987 99999999963 344444
No 175
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.02 E-value=0.13 Score=45.55 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~ 103 (306)
+.++|+|+|. |++|+...+.|.+.|.+++ ..|.+... . +..|....++ +++... ++|+.+-+.... ...+.
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT 102 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH
Confidence 3478999999 9999999999999999987 66654310 1 1124444433 455442 489888554432 22233
Q ss_pred HHHHHHcCCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEE---ccCCCceecC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLI---GPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~ii---GPNc~Gi~~~ 153 (306)
+.+.+.+.|+-.+.+... .+.. ++.++.|+.++ +-|+-|++..
T Consensus 103 ---~~~l~~~~v~~~AN~~~~~~~~~----~~L~~~Gi~~~Pd~~~NaGGv~~~ 149 (200)
T cd01075 103 ---IPQLKAKAIAGAANNQLADPRHG----QMLHERGILYAPDYVVNAGGLINV 149 (200)
T ss_pred ---HHHcCCCEEEECCcCccCCHhHH----HHHHHCCCEEeCceeeeCcCceee
Confidence 334567866644434322 2222 34578898875 3467777764
No 176
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.00 E-value=0.075 Score=49.59 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCch---
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~--- 98 (306)
..|++|.|+| .+.|......+... +|++.+..--.-.. . .-.|+|.|.+.+++|+. ||++-+.+...
T Consensus 2 ~~pksVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd~--idiACVvVrsai~G 77 (361)
T COG4693 2 SDPKSVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPDD--IDIACVVVRSAIVG 77 (361)
T ss_pred CCCceEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCCC--CCeEEEEEeeeeec
Confidence 4688999999 46777766655553 88877554432100 1 24699999999999987 99988766543
Q ss_pred -hHHHHHHHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 -GAAKAIHEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 -~~~~~~~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~ii 143 (306)
.-.++.+.+++.||+.+ ++.- -.+|..+++ ++|++.|-+..
T Consensus 78 g~Gs~larall~RGi~Vl---qEHPl~p~di~~l~-rlA~rqG~~y~ 120 (361)
T COG4693 78 GQGSALARALLARGIHVL---QEHPLHPRDIQDLL-RLAERQGRRYL 120 (361)
T ss_pred CCcHHHHHHHHHcccHHH---HhCCCCHHHHHHHH-HHHHHhCcEEE
Confidence 33567888888898842 3432 233444444 47777776554
No 177
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=94.98 E-value=0.16 Score=50.26 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=81.5
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEee--CC---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEI--GG--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~--~~--------- 235 (306)
..|+|+++.--++++.+.++.....|--..-|.-+|+.+ ..-.....++-+..||+.|+|++=+=+ .+
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 579999999999999999999999999999999999974 445677888889999999999883222 12
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNE 295 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~ 295 (306)
...++|||+=-.|+... .=...|++.| +..++|++|-...
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~~--------------------~g~~~l~~~~~~~~~~~~l~~A~~~ 415 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNVD--------------------QGKRILKESGMTLITAEDLDDAAEK 415 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCHH--------------------HHHHHHHhCCCCeEEcCCHHHHHHH
Confidence 13578999865665532 2268899999 5555555554443
No 178
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.96 E-value=0.081 Score=49.83 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeec--cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPV--FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..+++.|+|+ |..|+...+.++..|.++. .+|++.... +..|.+. |.++.+...+ .|++|.++|+....+-
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVGK--IDIIFNTIPALVLTKE 226 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhCC--CCEEEECCChhhhhHH
Confidence 4689999999 9999999999999998754 556553101 1234332 2345555444 8999999987543322
Q ss_pred HHHHHHcCCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEc-cCCCceecC
Q psy8894 104 IHEALDAEMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIG-PNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiG-PNc~Gi~~~ 153 (306)
.-+..+. ..+++ ++......+. +.++++|+++++ ||-.|.+-|
T Consensus 227 ~l~~~~~--g~vIIDla~~pggtd~-----~~a~~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 227 VLSKMPP--EALIIDLASKPGGTDF-----EYAEKRGIKALLAPGLPGKVAP 271 (296)
T ss_pred HHHcCCC--CcEEEEEccCCCCcCe-----eehhhCCeEEEEECCCCccCCH
Confidence 2122233 33332 3432212221 246888998887 444455544
No 179
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.92 E-value=0.24 Score=44.74 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCcee---cCeecc-CCH----Hhhhhc--CCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTH---LDLPVF-NTV----KEARDA--TGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i---~Gip~y-~sl----~el~~~--~~iDlavi~vp~~ 98 (306)
+++|.|+|++|..|+...+.|.+.|+++++.+ ++....... .++.++ -++ +++.+. .++|+++.+.+..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 57899999999999999999999999976543 222100000 112212 122 122111 1478877665431
Q ss_pred --------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.+.+.|++.++.+++
T Consensus 97 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 97 RSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred cCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2355666666677777666554
No 180
>PLN02858 fructose-bisphosphate aldolase
Probab=94.89 E-value=0.16 Score=57.21 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~- 104 (306)
..++|++||. |+||....++|.+.|+++. ..|.+.... .-.|.....|..|+.+. .|++++++|...+.+.+
T Consensus 3 ~~~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~--advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 3 SAGVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAKD--AAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCCeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEEcCChHHHHHHH
Confidence 4578999999 9999999999999999964 445543111 12477888999999986 99999999986654433
Q ss_pred ---HHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcC--CeEE
Q psy8894 105 ---HEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSK--SRLI 143 (306)
Q Consensus 105 ---~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~g--i~ii 143 (306)
+.+++. .-..+|+ +|+-- .+..+++.+ .+++.| ++++
T Consensus 79 ~g~~g~~~~l~~g~iivd~STi~-p~~~~~la~-~l~~~g~~~~~l 122 (1378)
T PLN02858 79 FGDEGAAKGLQKGAVILIRSTIL-PLQLQKLEK-KLTERKEQIFLV 122 (1378)
T ss_pred hchhhHHhcCCCcCEEEECCCCC-HHHHHHHHH-HHHhcCCceEEE
Confidence 223332 1223444 44443 334444433 345566 6544
No 181
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.84 E-value=0.14 Score=49.18 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc---e---------ecC--eecc--CC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK---T---------HLD--LPVF--NT 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~---~---------i~G--ip~y--~s 78 (306)
+.+|+|.|+ |+||+.+.+.+.+. +++++++.+|... |. + +.| ++++ .+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 368999999 99999999987765 7888877665321 10 0 123 2333 25
Q ss_pred HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++=. ++|+++.|+......+.+...++.|.+.|++
T Consensus 81 ~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 81 IADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 6777654 7999999999999999999999999998776
No 182
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.70 E-value=0.28 Score=44.06 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCCCCCceecCeeccC-CHHhhhhc-CCCcEEEEe-cCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPGKGGKTHLDLPVFN-TVKEARDA-TGAEATVIY-VPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~~~g~~i~Gip~y~-sl~el~~~-~~iDlavi~-vp~~~~~~~~~ 105 (306)
++|+|+.. |.-|+-.++++...+|. +++...+. +++ +-|- .-+++..+ .+.|++|-. .+|+....+.+
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~P---e~~---~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e 74 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYP---EEL---PDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALPE 74 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceEEEEecc---ccc---cchhhCHHHhcCCCCCCCEEEEeccCccHHHHHHH
Confidence 57899987 88888888888876654 55554441 111 1121 11222211 248999965 89999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc----cccc-CCCCC----CCCCCCEEEE--
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ----CKIG-IMPGH----IHQRGCVGVV-- 174 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~----~~~~-~~~~~----~~~~G~va~v-- 174 (306)
++...|++++++ ..+- ..+..+.+++.+.+.|+.+.-|.-+=-+.+.. ..+. -+... ....|.|..|
T Consensus 75 ~~~~~~~~alIv-p~~~-~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev~~~~i~~V~V 152 (224)
T COG1810 75 KAAEGGVKALIV-PAEP-PEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEVENGKIKDVDV 152 (224)
T ss_pred HHHhCCccEEEE-ecCC-ChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEecCCeEEEEEE
Confidence 999999999876 3332 23555555667888999887776554444332 1111 11111 2356777765
Q ss_pred ecChhhHHHH
Q psy8894 175 SRSGTLTYEA 184 (306)
Q Consensus 175 SqSG~~~~~~ 184 (306)
..|.--+.+.
T Consensus 153 ~RsaPCGsT~ 162 (224)
T COG1810 153 LRSAPCGSTW 162 (224)
T ss_pred EecCCCchHH
Confidence 5555555554
No 183
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=94.58 E-value=0.29 Score=44.19 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHHHc-CCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE-ecCchhHHHHHHHHHHcCCCEE
Q psy8894 39 TGKQGTFHSKQAIEY-GTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI-YVPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 39 sg~~G~~~~~~l~~~-g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi-~vp~~~~~~~~~e~~~~Gi~~v 115 (306)
+|+-|.-.++++.++ ++. .+..++....-++.-..| ..-|.++++ .|++|. ..+|+...++++.|.+.|++++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~~---~Dl~I~y~lHPDl~~~l~~~~~e~g~kav 80 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIPE---ADLLIAYGLHPDLTYELPEIAKEAGVKAV 80 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCCC---CCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence 366777788888886 666 233444321112211112 112444444 799996 7999999999999999999998
Q ss_pred EEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 116 VCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 116 vi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
++ ....+..++.+.+++.+++.|+.+.-|.-+=-+.+
T Consensus 81 Iv-p~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 81 IV-PSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred EE-ecCCCccchHHHHHHHHHhcCceeecCccccccCC
Confidence 75 43433445555555678999999999986655544
No 184
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.53 E-value=0.22 Score=48.49 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=60.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----------eecCeecc-------CCHHhhhhcC--
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----------THLDLPVF-------NTVKEARDAT-- 86 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----------~i~Gip~y-------~sl~el~~~~-- 86 (306)
...+.++|.|+|++|..|+...+.|.+.|++++..+.+...-. ...++..+ .++.++.+..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999875543221000 01122222 1233433321
Q ss_pred CCcEEEEecCc-------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 87 GAEATVIYVPP-------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 87 ~iDlavi~vp~-------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++|+++.+..+ .....+++.|.+.|++.++.+++
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 48998876532 12456778888899998776665
No 185
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.50 E-value=0.19 Score=49.12 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEee-CCCCCC---------c---eec---------------CeeccC---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV-SPGKGG---------K---THL---------------DLPVFN--- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V-nP~~~g---------~---~i~---------------Gip~y~--- 77 (306)
++|+|+|++|..|+..++.++++ .|++++.. +.+... . -+. +++++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 81 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE 81 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence 68999999999999988877765 78877654 322200 0 000 122222
Q ss_pred CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.++.+..++|+++.+++........-+|+++|.+.++ +..-+--..-.++.++++++|.+++
T Consensus 82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL--ANKEslV~aG~~i~~~a~~~g~~i~ 145 (385)
T PRK05447 82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL--ANKESLVCAGELVMDAAKKSGAQIL 145 (385)
T ss_pred HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE--eCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 244554444589999999988888888999999977433 3221100111233456788886664
No 186
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.49 E-value=0.26 Score=46.43 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCC----CCcee---cC------eeccCCHHhhhhcCCCcEEEEec
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGK----GGKTH---LD------LPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~----~g~~i---~G------ip~y~sl~el~~~~~iDlavi~v 95 (306)
.++|+|+|+ |.+|......|.+.|.++... -++.. .|-.+ .| .+++.+.+++ . .+|+++++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDM-P--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhc-C--CCCEEEEEe
Confidence 468999999 999998888888888875422 22210 01111 11 1223333332 2 389999999
Q ss_pred CchhHHHHHHHHHHcC--CCEEEEecCCCChhH
Q psy8894 96 PPPGAAKAIHEALDAE--MPLIVCITEGIPQLD 126 (306)
Q Consensus 96 p~~~~~~~~~e~~~~G--i~~vvi~t~Gf~e~~ 126 (306)
+...+.++++.+...- -..++.++-|+...+
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e 113 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEE 113 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 9998888777665431 123556788886443
No 187
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.44 E-value=1.3 Score=40.65 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--CeEEEeeC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--TKVVGGVS 62 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--~~vv~~Vn 62 (306)
+|.|.|++|..|+...+.|++.| ++++ .++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence 58999999999999999888876 6766 443
No 188
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.42 E-value=1.2 Score=41.22 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=26.6
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
|.|.|++|-.|+...+.|++.|++++..++.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence 6899999999999999999999976656654
No 189
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.42 E-value=0.26 Score=46.75 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCee-----------------ccCCHHhhhhcCCCcEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLP-----------------VFNTVKEARDATGAEAT 91 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip-----------------~y~sl~el~~~~~iDla 91 (306)
++|+|+|+ |.+|......|.+.|+++. .+++...-+. ..|+. +..+.++ .. +.|++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~v 77 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA-LA--TADLV 77 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhh-cc--CCCEE
Confidence 47999999 9999999999999898865 4554320011 11221 2233432 23 49999
Q ss_pred EEecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 92 VIYVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+++++.....++++++... .- ..++.++.|+...
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999999988877653 22 2344467788654
No 190
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.37 E-value=0.031 Score=52.12 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec----------Cc---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV----------PP--- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v----------p~--- 97 (306)
+||.|+|++|-.|+...+.+.+.|+++++ ++... .++.-...+.++.++..||++|-|. .+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~-~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIA-TSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEE-ESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEE-eCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 58999999999999999999988988774 45442 1122233456665544699999875 22
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 -----PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 -----~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.+. +|+
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~-~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIH-IST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence 2233567788889999776 454
No 191
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.093 Score=49.41 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce-------------ecC-------------eeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT-------------HLD-------------LPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~-------------i~G-------------ip~y~sl~el~ 83 (306)
++|+|+|+ |.+|......+.+.|++++ .+|++... +. -.| +....+++++.
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 47999997 9999998899999999865 66665310 00 012 24556787776
Q ss_pred hcCCCcEEEEecCchh--HHHHHHHHHHc
Q psy8894 84 DATGAEATVIYVPPPG--AAKAIHEALDA 110 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~--~~~~~~e~~~~ 110 (306)
+. .|+++.++|.+. -..++.++.+.
T Consensus 81 ~~--ad~Vi~avpe~~~~k~~~~~~l~~~ 107 (308)
T PRK06129 81 AD--ADYVQESAPENLELKRALFAELDAL 107 (308)
T ss_pred CC--CCEEEECCcCCHHHHHHHHHHHHHh
Confidence 54 999999999763 34455555443
No 192
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.25 E-value=0.31 Score=43.89 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC----C----c------eecCeeccCC-----HHhhhhcCCCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG----G----K------THLDLPVFNT-----VKEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~----g----~------~i~Gip~y~s-----l~el~~~~~iD 89 (306)
+.++|+|.|+ |+.|+...+.|.+.|.++++..|.+.. | + +..++..|+. -+++.. .++|
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D 99 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVD 99 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-cccc
Confidence 4689999999 999999999999999998887665420 0 0 1123333331 123332 2589
Q ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC----Cceec
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC----PGIIA 152 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc----~Gi~~ 152 (306)
+++-|.+.... .-+.+.+.++|.|+-.+.+....+..+ +-+++|+.+ .|.. -|++.
T Consensus 100 VlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~----~L~~~Gi~v-~Pd~~~NaGGvi~ 159 (217)
T cd05211 100 IFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALR----ILHERGIVV-APDIVANAGGVIV 159 (217)
T ss_pred EEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHH----HHHHCCcEE-EChHHhcCCCeEe
Confidence 99888776522 334555667887664444433333333 446778544 4754 35554
No 193
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.16 E-value=0.27 Score=44.07 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----eecCeecc-CCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVF-NTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y-~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+++++|+|+ |++|+...+.+.+.|++++.. +.+.... +..+..+- .+.+|..+. -|++++.+|-+..+++
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~--aDVVvLAVP~~a~~~v 76 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAAL--ADVVVLAVPFEAIPDV 76 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHhc--CCEEEEeccHHHHHhH
Confidence 367888998 999999999999999997633 2221001 12222222 245666654 8999999999999999
Q ss_pred HHHHHH-cCCCEEEE
Q psy8894 104 IHEALD-AEMPLIVC 117 (306)
Q Consensus 104 ~~e~~~-~Gi~~vvi 117 (306)
+++..+ .+ ..|++
T Consensus 77 ~~~l~~~~~-~KIvI 90 (211)
T COG2085 77 LAELRDALG-GKIVI 90 (211)
T ss_pred HHHHHHHhC-CeEEE
Confidence 999997 45 33443
No 194
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.14 E-value=0.15 Score=51.88 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|++.. +++++..+ .|++++++|.. .+..++
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~~--aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLAR--ADFITLHTPLTPETRGLI 212 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHhh--CCEEEEccCCChHhhcCc
Confidence 3588999999 9999999999999999976 677743111 22355544 79999876 99999999974 344444
No 195
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.11 E-value=0.074 Score=49.60 Aligned_cols=91 Identities=18% Similarity=0.065 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----e----c--------C-------------eeccCCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----H----L--------D-------------LPVFNTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----i----~--------G-------------ip~y~sl~ 80 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...-+ + . | +....+++
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 68999999 9999999888988999865 5555431000 0 0 1 11223343
Q ss_pred hhhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 81 EARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 81 el~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
.+ + +.|+++.++|.+. -.++++++.+. .-+.+++ -|+|++..+
T Consensus 82 ~~-~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~ 128 (291)
T PRK06035 82 SL-S--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE 128 (291)
T ss_pred Hh-C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHH
Confidence 33 3 3899999999876 35566665443 2233433 345665443
No 196
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.091 Score=48.94 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---------------------------ecCeeccCCHHhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---------------------------HLDLPVFNTVKEA 82 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---------------------------i~Gip~y~sl~el 82 (306)
++|+|+|+ |.+|......+.+.|+++. .++++... +. ...+....++++.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 68999999 9999988888888899864 55543200 00 1233455677776
Q ss_pred hhcCCCcEEEEecCch--hHHHHHHHHHHc-CCCEEE-EecCCCChh
Q psy8894 83 RDATGAEATVIYVPPP--GAAKAIHEALDA-EMPLIV-CITEGIPQL 125 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~--~~~~~~~e~~~~-Gi~~vv-i~t~Gf~e~ 125 (306)
.+. .|+++.++|.+ ...++++++.+. .-+.++ .-|+.++..
T Consensus 82 ~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~ 126 (287)
T PRK08293 82 VKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS 126 (287)
T ss_pred hcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH
Confidence 554 89999999955 456666666553 222333 234455443
No 197
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.08 E-value=0.19 Score=51.51 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCce----e-------------cCeecc-CC---HHh
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKT----H-------------LDLPVF-NT---VKE 81 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~----i-------------~Gip~y-~s---l~e 81 (306)
...+.+.+.|+|.|++|..|+...+.|.+.|+++++.+ |+... .. + ..+.++ -+ .++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34455678899999999999999999999999976443 22110 00 0 011111 12 222
Q ss_pred hhhc-CCCcEEEEecCch----------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 82 ARDA-TGAEATVIYVPPP----------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 82 l~~~-~~iDlavi~vp~~----------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+.+. .++|++|.+.... .+..+++.|.+.|++.+|++++
T Consensus 153 I~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 153 IGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 2211 1489888765321 2455677777889988887776
No 198
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.06 E-value=0.62 Score=36.21 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=52.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe---cCchhHHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY---VPPPGAAKAIHEAL 108 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~---vp~~~~~~~~~e~~ 108 (306)
+|+|||.-.+.-...-+.+.++|++.+.- .++. +.+ +--..|.+...+ +|++|++ +.......+-+.|.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~-~~~----~~~~~l~~~i~~--aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG-GDE----KKASRLPSKIKK--ADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC-CCc----cchhHHHHhcCC--CCEEEEEeCCcChHHHHHHHHHHH
Confidence 58999964455555566788889996533 2221 110 011114444443 7999985 56677777888888
Q ss_pred HcCCCEEEEecCCCChhHHHH
Q psy8894 109 DAEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
+.+++.+. +.+.+-..+++
T Consensus 73 k~~ip~~~--~~~~~~~~l~~ 91 (97)
T PF10087_consen 73 KYGIPIIY--SRSRGVSSLER 91 (97)
T ss_pred HcCCcEEE--ECCCCHHHHHH
Confidence 89999544 45454444443
No 199
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.02 E-value=0.34 Score=46.09 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~--~ 105 (306)
.-++++|+|. |+.|+.+.+.++.+|++++ ..+|.. .. ... -+.+++++..+ .|++++++|-. .+..++ +
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~~--sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLPQ--VDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHHh--CCEEEECCCCChHHhcCcCHH
Confidence 4579999999 9999999999999999987 567643 11 111 24579999876 89999999953 333333 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
.....+-.+++ +..+
T Consensus 219 ~~~~mk~ga~l-IN~a 233 (317)
T PRK06487 219 ELALMKPGALL-INTA 233 (317)
T ss_pred HHhcCCCCeEE-EECC
Confidence 33334444444 3444
No 200
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.99 E-value=0.34 Score=44.51 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e~ 107 (306)
.+.+||. |+||....+++++.|.++|+. +||....+ .-.|..--.|++++..+. .|..+-+.+|+- .+..+++++
T Consensus 2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 5789999 999999999999999996644 77764211 123556666777776542 478888999987 788888888
Q ss_pred HHc-CCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 108 LDA-EMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
..+ ...-++ +-.|=+. .+..++. +..+++|+.++--.+-|=+.
T Consensus 81 a~~L~~GDiv-IDGGNS~y~Ds~rr~-~~l~~kgi~flD~GTSGG~~ 125 (300)
T COG1023 81 APLLSAGDIV-IDGGNSNYKDSLRRA-KLLAEKGIHFLDVGTSGGVW 125 (300)
T ss_pred HhhcCCCCEE-EECCccchHHHHHHH-HHHHhcCCeEEeccCCCCch
Confidence 764 333344 4555442 2333333 24578899988777665554
No 201
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.90 E-value=0.13 Score=52.17 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=64.5
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------ecC-------------eeccCCH
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------HLD-------------LPVFNTV 79 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------i~G-------------ip~y~sl 79 (306)
+.+.++|+|||+ |.||.-....+.+.|++++ .+|.+...-+ -.| +....++
T Consensus 2 ~~~~~kV~VIGa-G~MG~gIA~~la~aG~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~ 79 (503)
T TIGR02279 2 LINVVTVAVIGA-GAMGAGIAQVAASAGHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDL 79 (503)
T ss_pred CCCccEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCH
Confidence 345678999999 9999999999999999965 5554421000 012 3345567
Q ss_pred HhhhhcCCCcEEEEecCchhHH--HHHHHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 80 KEARDATGAEATVIYVPPPGAA--KAIHEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 80 ~el~~~~~iDlavi~vp~~~~~--~~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+++. +.|++|-++|.+... .+..++.+. .-+.++. =|+.++.+++.+...+-.|..|+..+-|
T Consensus 80 ~~l~---~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~P 146 (503)
T TIGR02279 80 HALA---DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNP 146 (503)
T ss_pred HHhC---CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCc
Confidence 7664 389999999974432 233443332 2233332 2556655443322111123445555553
No 202
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.19 Score=48.37 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCC---------------C---------CCCc--eecC--eeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSP---------------G---------KGGK--THLD--LPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP---------------~---------~~g~--~i~G--ip~y~- 77 (306)
.+|+|.|+ |+.|+...+.+.+. .++++ .||. . ..++ .+.| ++++.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 47999999 99999999988774 34555 3442 1 0111 1234 34442
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
++++++= +.++|+++.|+......+.+...++.|.+.|++ |.-+
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-Sap~ 125 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-SHPG 125 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-cCCc
Confidence 5677764 236999999999999999999999999998775 5444
No 203
>KOG1203|consensus
Probab=93.83 E-value=0.29 Score=48.17 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=33.7
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
....++..|.|+|++|+.|+...+.|++.||.+-+.|=..
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~ 113 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE 113 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh
Confidence 3456789999999999999999999999999876665443
No 204
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.79 E-value=0.38 Score=42.11 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCC-----Cc----e----------e--cCeeccCCHHhhhhcCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKG-----GK----T----------H--LDLPVFNTVKEARDATGA 88 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~-----g~----~----------i--~Gip~y~sl~el~~~~~i 88 (306)
++|+|+|. |..|-...-.|.+.|+++++. +|+... |. | + ..+....+.++.... .
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~--a 77 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD--A 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH---
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc--c
Confidence 58999999 888877777888899998843 333211 00 0 0 123455567775554 8
Q ss_pred cEEEEecCchh----------HHHHHHHHHHcC-CCEEEEecCCC
Q psy8894 89 EATVIYVPPPG----------AAKAIHEALDAE-MPLIVCITEGI 122 (306)
Q Consensus 89 Dlavi~vp~~~----------~~~~~~e~~~~G-i~~vvi~t~Gf 122 (306)
|++++|+|... +..+++.....- -..++++-+=+
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 99999998543 455566655532 23444445433
No 205
>PLN02928 oxidoreductase family protein
Probab=93.76 E-value=0.12 Score=49.89 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec---------------CeeccCCHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL---------------DLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~---------------Gip~y~sl~el~~~~~iDlavi 93 (306)
.-++++|+|. |++|+...+.++.+|++++ ..||........ +. -+.+++++..+ .|++++
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~--aDiVvl 232 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGE--ADIVVL 232 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHhh--CCEEEE
Confidence 3579999999 9999999999999999986 567652101100 11 35689999876 999999
Q ss_pred ecCc
Q psy8894 94 YVPP 97 (306)
Q Consensus 94 ~vp~ 97 (306)
++|-
T Consensus 233 ~lPl 236 (347)
T PLN02928 233 CCTL 236 (347)
T ss_pred CCCC
Confidence 9984
No 206
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=93.72 E-value=0.59 Score=45.42 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=87.6
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+|+++--.++++.+.++.....|--...|.-+|+.+..+ .+.+-++.+..||++|+|++-+=+. +
T Consensus 254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e-~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi 332 (387)
T COG0045 254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAE-RVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGII 332 (387)
T ss_pred ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHH-HHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHH
Confidence 359999999999999999999998999999999999986333 4888899999999999997764332 1
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
...++|+|+=-.|+... .=...++++| +..+++++|...-+.
T Consensus 333 ~Al~e~~~~vPlVVRL~GtN~e--------------------~Gk~iL~esg~~i~~~~~l~~aa~k~v 381 (387)
T COG0045 333 AALKEVGVNVPLVVRLEGTNVE--------------------EGKRILAESGLNIIAADDLDEAAEKAV 381 (387)
T ss_pred HHHHhcCCCCCEEEEcCCCCHH--------------------HHHHHHHHcCCceEecccHHHHHHHHH
Confidence 24679999987777643 2268899999 788888877766554
No 207
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.31 Score=46.51 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCC-----------------CCc--------ee--cCeeccCCH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGK-----------------GGK--------TH--LDLPVFNTV-- 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~-----------------~g~--------~i--~Gip~y~sl-- 79 (306)
.+|+|-|+ |+.||.+.+.+.+. ++++++..++.. .++ .+ .+++++.+.
T Consensus 2 ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 2 IKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred cEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence 58999999 99999999988776 488886544111 010 11 257777653
Q ss_pred Hhhhhc-CCCcEEEEecCchhHHHHHHHHHHc-CCCEEEEecCC
Q psy8894 80 KEARDA-TGAEATVIYVPPPGAAKAIHEALDA-EMPLIVCITEG 121 (306)
Q Consensus 80 ~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~-Gi~~vvi~t~G 121 (306)
++||-. .++|++|.|+|.-...+-.+.-+++ |+|.|++-.++
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 456543 3689999999999988888887877 69998864444
No 208
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.51 E-value=0.19 Score=41.71 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCe-------------eccCCHHhhhhcCCCcEEEEecCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDL-------------PVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gi-------------p~y~sl~el~~~~~iDlavi~vp~ 97 (306)
|+|+|+ |.+|....-.|.+.|.++.....++. .+. ..|+ +.+..-+.. ....+|++++++..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPR-LEAIKEQGLTITGPDGDETVQPPIVISAPSA-DAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHH-HHHHHHHCEEEEETTEEEEEEEEEEESSHGH-HHSTESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEcccc-HHhhhheeEEEEecccceecccccccCcchh-ccCCCcEEEEEecc
Confidence 789999 99999888888888888653333331 010 1121 111111111 12259999999999
Q ss_pred hhHHHHHHHHHHcCCC--EEEEecCCCChhH
Q psy8894 98 PGAAKAIHEALDAEMP--LIVCITEGIPQLD 126 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~--~vvi~t~Gf~e~~ 126 (306)
....++++.+...--+ .++.++.|+...+
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 9999999997665333 5777899986543
No 209
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.47 E-value=0.3 Score=40.09 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |..|....++|...|..-+..+|+.....+ +.-...|. .+.+...+..|++-+...+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 578999999 889999999999999975557887653221 11111221 122222223467777777766
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+..++.. .+...|+..+.- ......+.++|+++++.++--...|
T Consensus 81 ~~~~~~~~~~-~~~d~vi~~~d~---~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVIDCVDS---LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEEESSS---HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc-cCCCEEEEecCC---HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 6666677766 467766543322 2223334468899998777544333
No 210
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.45 E-value=0.62 Score=46.44 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=68.8
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--ce---------ec----C
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--KT---------HL----D 72 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~~---------i~----G 72 (306)
..+..+++|+|+|++|..|+-.++.++++ .|++++.. +|+... ++ +. +
T Consensus 52 ~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~ 131 (454)
T PLN02696 52 KGWDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK 131 (454)
T ss_pred cccCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence 56777899999999999999888877775 67776541 222100 00 00 1
Q ss_pred eeccC---CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 73 LPVFN---TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 73 ip~y~---sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
.+++. .+.++....++|++|-.+-.-.-..-.-+++++|.+. . ++.. |.- .-.++.++++++|.+|+
T Consensus 132 ~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~V-A-LANK--ESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 132 PEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDI-A-LANK--ETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred cEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcE-E-EecH--HHHHhhHHHHHHHHHHcCCeEe
Confidence 22333 3455554445899988777765555557888898663 3 2322 110 11233457788886655
No 211
>PRK05865 hypothetical protein; Provisional
Probab=93.41 E-value=0.64 Score=50.03 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-------CCHHhhhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-------NTVKEARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-------~sl~el~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|..|+...+.|.+.|++++....... .....++..+ .++.++.+. +|.+|.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~-~~~~~~v~~v~gDL~D~~~l~~al~~--vD~VVHlAa~~~~~~~ 77 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRP-DSWPSSADFIAADIRDATAVESAMTG--ADVVAHCAWVRGRNDH 77 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCch-hhcccCceEEEeeCCCHHHHHHHHhC--CCEEEECCCcccchHH
Confidence 37999999999999999999999999875543211 0000122211 234444443 9999887543
Q ss_pred ---hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 98 ---PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 98 ---~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.....+++.|.+.|++.++.+++..
T Consensus 78 vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 78 INIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2345677888888998888777653
No 212
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.40 E-value=0.49 Score=45.14 Aligned_cols=87 Identities=9% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHH-HcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAI-EYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
.-++++|+|. |+.|+.+.+.++ .+|++++ ..+|....+ ...|.+ |.+++++.++ .|++++.+|-.. +..++
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~~--sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQE--SDFVCIILPLTDETHHLF 218 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHHh--CCEEEEeCCCChHHhhcc
Confidence 4589999999 999999999887 7899976 456542111 123443 5689999887 999999998533 33333
Q ss_pred --HHHHHcCCCEEEEecCC
Q psy8894 105 --HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 --~e~~~~Gi~~vvi~t~G 121 (306)
+.....+-.+++| .++
T Consensus 219 ~~~~l~~mk~ga~lI-N~a 236 (323)
T PRK15409 219 GAEQFAKMKSSAIFI-NAG 236 (323)
T ss_pred CHHHHhcCCCCeEEE-ECC
Confidence 3333445455443 443
No 213
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.39 E-value=0.39 Score=46.17 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc------------------ee----------cC--eeccC-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK------------------TH----------LD--LPVFN- 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~------------------~i----------~G--ip~y~- 77 (306)
+.||+|+|+ |++|+.+.+.+.+. +.++++..||...-+ ++ .| ++++.
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 479999999 99999998887664 788887766643100 01 11 12221
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.++++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii 125 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI 125 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence 1224431 136999999999999999999999999998775
No 214
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.37 E-value=0.44 Score=45.30 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=57.6
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Cce------------ecCeeccC-C------HHhhhhc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GKT------------HLDLPVFN-T------VKEARDA 85 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~~------------i~Gip~y~-s------l~el~~~ 85 (306)
+..+.++|.|.|++|-.|+...+.|++.|+++++..+.... ... ...+..+. + ++++.+.
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 44556899999999999999999999999998754321110 000 00111111 2 3344443
Q ss_pred CCCcEEEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 86 TGAEATVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 86 ~~iDlavi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+|.+|=+... ..+..+++.|.+.|++.++..++
T Consensus 91 --~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 91 --VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred --CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 8988755321 12346788888899987775553
No 215
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.31 E-value=0.15 Score=48.60 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----------------------ecCeeccCCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----------------------HLDLPVFNTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----------------------i~Gip~y~sl~el~~~~ 86 (306)
.++|+|||+ |.||.-....+...|+++. ..|+.....+ ...+....++++....
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~- 83 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD- 83 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC-
Confidence 478999999 9999988888888999975 5555421000 0112344567776654
Q ss_pred CCcEEEEecCchhH
Q psy8894 87 GAEATVIYVPPPGA 100 (306)
Q Consensus 87 ~iDlavi~vp~~~~ 100 (306)
.|+++-++|....
T Consensus 84 -aDlViEavpE~l~ 96 (321)
T PRK07066 84 -ADFIQESAPEREA 96 (321)
T ss_pred -CCEEEECCcCCHH
Confidence 8999999986553
No 216
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.24 E-value=0.59 Score=44.71 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHH-HHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA-KAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~-~~~ 104 (306)
-+-+++.|+|. |+.|+.+.+.++.+|++++ .-||... -++..+ -.|-+++++.++ .|++++.+|...-- .++
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~-~~y~~l~ell~~--sDii~l~~Plt~~T~hLi 218 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELG-ARYVDLDELLAE--SDIISLHCPLTPETRHLI 218 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcC-ceeccHHHHHHh--CCEEEEeCCCChHHhhhc
Confidence 44689999999 9999999999998899976 4444431 012223 345559999987 99999998874433 333
Q ss_pred --HHHHHcCCCEEEEecCC
Q psy8894 105 --HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 --~e~~~~Gi~~vvi~t~G 121 (306)
+....++-.++++ -++
T Consensus 219 n~~~l~~mk~ga~lV-Nta 236 (324)
T COG1052 219 NAEELAKMKPGAILV-NTA 236 (324)
T ss_pred CHHHHHhCCCCeEEE-ECC
Confidence 4444555555554 443
No 217
>PRK06813 homoserine dehydrogenase; Validated
Probab=93.23 E-value=0.67 Score=44.72 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCChHHHHHHH--------HcCCe--EEEeeCCCCCCceecCeecc----------------C-CHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI--------EYGTK--VVGGVSPGKGGKTHLDLPVF----------------N-TVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~--------~~g~~--vv~~VnP~~~g~~i~Gip~y----------------~-sl~el~ 83 (306)
.+|+++|. |+.|+..++.+. ++|.+ +++..+.+..-..-.|++.. . +..++.
T Consensus 3 i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 58999999 999987765432 23444 66555543210001122110 1 111221
Q ss_pred hc-CCCcEEEEecCc-----hhHHHHHHHHHHcCCCEEEEecCCC-Ch-hHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 84 DA-TGAEATVIYVPP-----PGAAKAIHEALDAEMPLIVCITEGI-PQ-LDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 84 ~~-~~iDlavi~vp~-----~~~~~~~~e~~~~Gi~~vvi~t~Gf-~e-~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.. .++|++|.++|. +.+.+.+++++++|++.| |+.= .- ....++ .++|+++|..+.=--+.|
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV---TANK~~la~~~~eL-~~lA~~~g~~~~yEasVg 151 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV---AISKGALVTNWREI-NEAAKIANVRIRYSGATA 151 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE---cCCcHHHhccHHHH-HHHHHHcCCeEEEeeeee
Confidence 11 148999999886 467788899999999942 4421 11 112333 457899997766333333
No 218
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.21 E-value=0.19 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeec--cCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPV--FNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..++|+|+|+ |.+|+...+.+...|...+..+|+.... .+ ..|..+ +.++.+...+ .|+++.++|.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCchHH
Confidence 4689999999 9999999999988776655678876411 11 123222 2234444433 899999999887756
Q ss_pred HHHHHHHc
Q psy8894 103 AIHEALDA 110 (306)
Q Consensus 103 ~~~e~~~~ 110 (306)
.++.+.+.
T Consensus 254 ~~~~~~~~ 261 (311)
T cd05213 254 IVERAMKK 261 (311)
T ss_pred HHHHHHhh
Confidence 66665543
No 219
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.19 E-value=0.39 Score=38.58 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeC-CCCCCcee---cC-ee--ccCCH--HhhhhcCCCcEEEEecCchhHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVS-PGKGGKTH---LD-LP--VFNTV--KEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~Vn-P~~~g~~i---~G-ip--~y~sl--~el~~~~~iDlavi~vp~~~~~ 101 (306)
+|+|+|+.|..|+...+.+.+. ++++++.+. ++..++.. .+ +. .+..+ .++.. .+.|++++++|++.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE-LAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh-cCCCEEEEcCCcHHHH
Confidence 5899999899999888888885 888776633 32212221 11 11 11111 22221 2489999999999999
Q ss_pred HHHHHH
Q psy8894 102 KAIHEA 107 (306)
Q Consensus 102 ~~~~e~ 107 (306)
+.++..
T Consensus 80 ~~~~~~ 85 (122)
T smart00859 80 EIAPLL 85 (122)
T ss_pred HHHHHH
Confidence 976543
No 220
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.13 E-value=0.34 Score=44.79 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=48.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---cCeeccC------CHHhhhhcCCCcEEEEecCchh--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---LDLPVFN------TVKEARDATGAEATVIYVPPPG-- 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---~Gip~y~------sl~el~~~~~iDlavi~vp~~~-- 99 (306)
++|.|.|.++. |+...+.|.+.|+++++-+--.+..+.. .+.++.. ++.++..++++|++|++++|-+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~ 79 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ 79 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence 47999999886 9999999998999876543322211111 1223321 2433433445666666666533
Q ss_pred -HHHHHHHHHHcCCCEEE
Q psy8894 100 -AAKAIHEALDAEMPLIV 116 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vv 116 (306)
...+.+.|.+.|++.+=
T Consensus 80 is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHhCCcEEE
Confidence 23345555556665543
No 221
>KOG0409|consensus
Probab=93.09 E-value=0.58 Score=44.24 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=116.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeE-EEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKV-VGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~v-v~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.-...++|..+|. |.||+.-.++|.+.||++ ||-+++... + ...|..++.+-.|+.+. .|+++.++|.+....
T Consensus 31 ~~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae~--sDvvitmv~~~~~v~ 106 (327)
T KOG0409|consen 31 ITPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAED--SDVVITMVPNPKDVK 106 (327)
T ss_pred CCcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHhh--cCEEEEEcCChHhhH
Confidence 3445788999999 999999999999999994 444555431 2 23588999999999987 999999988765443
Q ss_pred -HHHH------HHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCccccccCCCCC--------C-
Q psy8894 103 -AIHE------ALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPEQCKIGIMPGH--------I- 165 (306)
Q Consensus 103 -~~~e------~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~~~~~~~~~~--------~- 165 (306)
++.. .+..|-+..+-.|+ ....-..++.++ ++..+.+.+ .|=+-|.--...+...++... .
T Consensus 107 ~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~-i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 107 DVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKA-ISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred HHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHH-HHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 3322 11122222122222 222223344443 445555444 888877776655433333221 0
Q ss_pred --CCCC-CEEEEecChhhHHH--HHHHH-HhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q psy8894 166 --HQRG-CVGVVSRSGTLTYE--AVHQT-TQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILI 230 (306)
Q Consensus 166 --~~~G-~va~vSqSG~~~~~--~~~~~-~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly 230 (306)
-.-| .+=+.-++|.-... +.+++ .-.=+|++..+..|-. .++|...|++-+.. -......+|
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r--~GLd~~~l~eiln~-G~~~S~~~~ 252 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADR--LGLDAKKLLEILNT-GRCWSSMFY 252 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhc-CCcccHHHh
Confidence 0124 56666677643322 11221 1223566666777777 78889999998877 444444445
No 222
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.97 E-value=0.79 Score=45.72 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-------CCCCCceec-----------CeeccC--------CHHhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-------PGKGGKTHL-----------DLPVFN--------TVKEA 82 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-------P~~~g~~i~-----------Gip~y~--------sl~el 82 (306)
+.++|+|.|. |+.|+...+.|.+.|.++++..| |+. -.+. .+.-|+ +-+++
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i 307 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSP 307 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCccc
Confidence 4689999999 99999999999999999987644 321 1110 111121 11222
Q ss_pred hhcCCCcEEEEecCc-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceecC
Q psy8894 83 RDATGAEATVIYVPP-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIAP 153 (306)
Q Consensus 83 ~~~~~iDlavi~vp~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~~ 153 (306)
.. .++|+.+-|... ....+.+....+.++|.|+=.+-|....+..+ +-+++|+.++ |. +-|++..
T Consensus 308 ~~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~----~L~~rGI~~v-PD~laNaGGVivs 377 (445)
T PRK09414 308 WS-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIE----VFLEAGVLFA-PGKAANAGGVATS 377 (445)
T ss_pred cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHH----HHHHCCcEEE-CchhhcCCCeeee
Confidence 22 358888877554 33455566666668887664444554333333 4477898776 64 4466654
No 223
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=92.93 E-value=0.85 Score=45.71 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=65.9
Q ss_pred CChHHHHHHHHcCCeEEEeeCCCCCCc-e-e------cCeeccCCHHhhhhcC-CCcEEEEecCchhH-HHHHHHHHHc-
Q psy8894 42 QGTFHSKQAIEYGTKVVGGVSPGKGGK-T-H------LDLPVFNTVKEARDAT-GAEATVIYVPPPGA-AKAIHEALDA- 110 (306)
Q Consensus 42 ~G~~~~~~l~~~g~~vv~~VnP~~~g~-~-i------~Gip~y~sl~el~~~~-~iDlavi~vp~~~~-~~~~~e~~~~- 110 (306)
||+...++|.+.||++. .-|...... + . .|+..+.|++|+.+.. .+|++++++|...+ .++++.++..
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 68888899999999975 556553111 1 1 2477888999988631 38999999998644 5565666654
Q ss_pred CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 111 EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 111 Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
....+|| .++-. ..+..++. +.+++.|++.++-.-.|
T Consensus 80 ~~GdiiID~gn~~-~~~t~~~~-~~l~~~Gi~fvdapVSG 117 (459)
T PRK09287 80 EKGDIIIDGGNSN-YKDTIRRE-KELAEKGIHFIGMGVSG 117 (459)
T ss_pred CCCCEEEECCCCC-HHHHHHHH-HHHHhcCCeEEecCCCC
Confidence 2233443 33222 33334443 34678899888655544
No 224
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=92.69 E-value=0.52 Score=43.27 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=56.6
Q ss_pred EEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-----------h----
Q psy8894 34 ICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-----------P---- 98 (306)
Q Consensus 34 aVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-----------~---- 98 (306)
.|.|++|-.|+...+.|++.|++++...+... .++.-+.+++++.+..++|++|-+... .
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~ 75 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIR 75 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHH
Confidence 37899999999999999999988663332221 233445567776665568998866411 1
Q ss_pred ----hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+++.++.+++
T Consensus 76 ~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 76 ENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2445788888899987776665
No 225
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.67 E-value=0.42 Score=42.84 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC----eEEEeeCCCCCCc---eecCeeccCC----HHhhhhcCCCcEEEEecC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT----KVVGGVSPGKGGK---THLDLPVFNT----VKEARDATGAEATVIYVP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~----~vv~~VnP~~~g~---~i~Gip~y~s----l~el~~~~~iDlavi~vp 96 (306)
.+..+|+|+|- |+.|+..+-.++++|- ...-++||...|- .-.|++.-.. |-..|+..++|++...+.
T Consensus 2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 45678999997 9999987555555432 2333689986432 2346554432 334455546889999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+-.+.+......+.||+.+- +|+
T Consensus 81 a~~h~~~a~~~ae~gi~~id-ltp 103 (310)
T COG4569 81 AGAHVKNAAALAEAGIRLID-LTP 103 (310)
T ss_pred cchhhcchHhHHhcCCceee-cch
Confidence 99999999999999999765 464
No 226
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.67 E-value=0.86 Score=43.88 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHHHHcCCeEEEeeCCCCCC--------ceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHHHHHHc-CCCEEE
Q psy8894 47 SKQAIEYGTKVVGGVSPGKGG--------KTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIHEALDA-EMPLIV 116 (306)
Q Consensus 47 ~~~l~~~g~~vv~~VnP~~~g--------~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~e~~~~-Gi~~vv 116 (306)
..+|.+.|++++ ..|++... -...|+.+..+..++..+ .|++++++|... +.++++.+... .-..+|
T Consensus 36 A~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IV 112 (342)
T PRK12557 36 AIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLPENAVI 112 (342)
T ss_pred HHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCCCCCEE
Confidence 356777888864 66765410 012467777778777655 999999999988 77888766653 222344
Q ss_pred EecCCCChh
Q psy8894 117 CITEGIPQL 125 (306)
Q Consensus 117 i~t~Gf~e~ 125 (306)
+-++..+..
T Consensus 113 Id~ST~~~~ 121 (342)
T PRK12557 113 CNTCTVSPV 121 (342)
T ss_pred EEecCCCHH
Confidence 433333333
No 227
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=92.65 E-value=0.63 Score=46.12 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCceecCee----------------ccCCHHhhhhcCCCcE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTHLDLP----------------VFNTVKEARDATGAEA 90 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i~Gip----------------~y~sl~el~~~~~iDl 90 (306)
.|++|+|+|. |.+|.....++.+ +++++ ++|.+. ...-..|.. .+.+-.+... +.|+
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~adv 79 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECNF 79 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCCE
Confidence 4688999999 9999877777665 68876 554432 100011221 2222223333 3899
Q ss_pred EEEecCch
Q psy8894 91 TVIYVPPP 98 (306)
Q Consensus 91 avi~vp~~ 98 (306)
+++|+|..
T Consensus 80 vii~Vptp 87 (425)
T PRK15182 80 YIITVPTP 87 (425)
T ss_pred EEEEcCCC
Confidence 99999965
No 228
>PRK08328 hypothetical protein; Provisional
Probab=92.53 E-value=0.96 Score=40.97 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=69.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh------------hhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA------------RDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el------------~~~~~iDlavi~vp~ 97 (306)
..+|+|+|+ |-.|..+.++|...|..-+..||+......-.+-..+.+-+++ ..+..+|+-|-..+.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 478999999 8899999999999999866688887532111111122111111 111246776665444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
....+.+++.. .+...|+..+..+ +...++.++|+++++.++.-.+.|+.
T Consensus 106 ~~~~~~~~~~l-~~~D~Vid~~d~~---~~r~~l~~~~~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 106 RLSEENIDEVL-KGVDVIVDCLDNF---ETRYLLDDYAHKKGIPLVHGAVEGTY 155 (231)
T ss_pred cCCHHHHHHHH-hcCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEeeccCE
Confidence 33344455544 3577665433332 22334456899999988876666554
No 229
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.51 E-value=1.1 Score=43.15 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee-ccC------------CHHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP-VFN------------TVKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip-~y~------------sl~el~~~~~iDlavi~vp 96 (306)
.++|+|+|+ |..|....++|...|..-+..||+......-.+-. .|. ...+-..+..+++-|...+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 88999999999999997556899875221111111 111 0111111123566555555
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.+...+.++++++ +...|+..+..+ +...++.++|+++++.++--.+.|
T Consensus 103 ~~~~~~~~~~~~~-~~DlVid~~D~~---~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVTVEELEELVK-EVDLIIDATDNF---DTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCCHHHHHHHhc-CCCEEEEcCCCH---HHHHHHHHHHHHcCCCEEEEEecc
Confidence 4444555666653 577766544333 223344568899998777555554
No 230
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=0.55 Score=44.98 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCC--ceecC--eeccC-----CHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGG--KTHLD--LPVFN-----TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g--~~i~G--ip~y~-----sl~el~~~~~iDlavi~vp~ 97 (306)
..+..+.|.||+|-.|+.+.+.+...|.+ .+++=|+..-. .+..| .++|+ .++++.+. .++++=|+-|
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~--~~VVlncvGP 81 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASR--TQVVLNCVGP 81 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhc--ceEEEecccc
Confidence 35678999999999999999999998877 44443332100 00112 23444 25566555 8999999988
Q ss_pred h--hHHHHHHHHHHcCCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 98 P--GAAKAIHEALDAEMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 98 ~--~~~~~~~e~~~~Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
- ....+++.|+..|.+.+=+ |.=+.- +.+..+..+.|++.|++|+ +|-||=+
T Consensus 82 yt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFDs 136 (382)
T COG3268 82 YTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARII--PGCGFDS 136 (382)
T ss_pred ccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEe--ccCCCCc
Confidence 4 4577999999999999775 432111 1123332345889999998 4456654
No 231
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.47 E-value=0.61 Score=43.10 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-------CCCCC-cee---------cC--eecc----C-----CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-------PGKGG-KTH---------LD--LPVF----N-----TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-------P~~~g-~~i---------~G--ip~y----~-----sl~ 80 (306)
+.++|+|.|. |+.|+...+.|.+.|.++++.-| |..-- +++ .+ +.-| + +-+
T Consensus 37 ~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~ 115 (254)
T cd05313 37 KGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGK 115 (254)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCc
Confidence 4579999999 99999999999999999987644 33100 000 01 0111 1 112
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC----CceecC
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC----PGIIAP 153 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc----~Gi~~~ 153 (306)
++.. .++|+.+-| +...-..+.++...+.+++.|+=.+-|....+..+ +.+++|+.++ |.. -|++..
T Consensus 116 ~~~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~----~L~~rGI~vv-PD~laNaGGVivs 187 (254)
T cd05313 116 KPWE-VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIE----VFRQAGVLFA-PGKAANAGGVAVS 187 (254)
T ss_pred chhc-CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHH----HHHHCCcEEE-CchhhcCCCeeee
Confidence 2222 247777765 33344455666666668887664444443333332 4477898776 754 466654
No 232
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.45 E-value=0.81 Score=42.28 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec--Ceecc-------CCHHhhhhcCCCcEEEEecCc----
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DLPVF-------NTVKEARDATGAEATVIYVPP---- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~--Gip~y-------~sl~el~~~~~iDlavi~vp~---- 97 (306)
++|.|.|++|-.|+...+.|.+.|+++++............ ++..+ .++.++.+. +|+++-+...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~d~vi~~a~~~~~~ 78 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAG--CRALFHVAADYRLW 78 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhC--CCEEEEeceecccC
Confidence 36999999999999999999999999764432211001111 22221 234444444 8988866532
Q ss_pred ------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.....+++.|.+.+++.++..++
T Consensus 79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11244567777888988776665
No 233
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.36 E-value=0.27 Score=49.87 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------ecC-------------eeccCCHHh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------HLD-------------LPVFNTVKE 81 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------i~G-------------ip~y~sl~e 81 (306)
+.++|+|||+ |.||.-....+.+.|++++ ..|++...-+ -.| +....++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 4578999999 9999998889999999975 5555431000 012 455567777
Q ss_pred hhhcCCCcEEEEecCchhHHH--HHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 82 ARDATGAEATVIYVPPPGAAK--AIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~~~~--~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
+. +.|++|-++|.+...+ ++.++.+. .-..++. =|+.++.++
T Consensus 84 ~~---~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~ 129 (507)
T PRK08268 84 LA---DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITA 129 (507)
T ss_pred hC---CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 64 3899999998866543 23444332 2233332 255555443
No 234
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.17 E-value=0.85 Score=40.31 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee-ccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP-VFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip-~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|.|+|+ |..|....++|...|..-+..+|+......-.+-. .|. .+.+-..+..||+-+-+.+..
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 478999999 66999999999999998667888875322111111 111 111112223477766544332
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
.. +..++.. .+...+++ +.. +.+ ....+.++|+++++.++-..+.|+.-
T Consensus 100 ~~-~~~~~~~-~~~dvVi~-~~~-~~~-~~~~ln~~c~~~~ip~i~~~~~G~~G 148 (197)
T cd01492 100 IS-EKPEEFF-SQFDVVVA-TEL-SRA-ELVKINELCRKLGVKFYATGVHGLFG 148 (197)
T ss_pred cc-ccHHHHH-hCCCEEEE-CCC-CHH-HHHHHHHHHHHcCCCEEEEEecCCEE
Confidence 22 2222222 45675553 433 222 23334568999999888777776553
No 235
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.15 E-value=0.94 Score=42.37 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-------ecC--eecc-CC------HHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-------HLD--LPVF-NT------VKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-------i~G--ip~y-~s------l~el~~~~~iDlavi~ 94 (306)
++|.|+|++|-.|+...+.|.+.|++++........... ..+ ...+ .+ +.++....++|++|-+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 369999999999999999999999997743221110010 001 1111 12 3333332358998876
Q ss_pred cCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.... ....+++.|.+.|++.++.+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4210 2345667777789988776565
No 236
>PLN02214 cinnamoyl-CoA reductase
Probab=92.15 E-value=0.96 Score=42.99 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCC-c---eec----Ceec-------cCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGG-K---THL----DLPV-------FNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g-~---~i~----Gip~-------y~sl~el~~~~~iDlav 92 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++.+. +.... . +.. .+.. ..+++++... +|.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDG--CDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhc--CCEEE
Confidence 3468999999999999999999999999765432 21100 0 000 1111 1234444443 89888
Q ss_pred EecCc-------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 93 IYVPP-------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 93 i~vp~-------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
-+..+ ..+..+++.|.+.|++.++..++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 76532 12455678888889988776654
No 237
>PLN02240 UDP-glucose 4-epimerase
Probab=91.98 E-value=1.2 Score=41.95 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-------e-----ecCeecc-------CCHHhhhhcCCCcE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-------T-----HLDLPVF-------NTVKEARDATGAEA 90 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-------~-----i~Gip~y-------~sl~el~~~~~iDl 90 (306)
.++|.|.|++|-.|+...+.|.+.|++++.......... . -.++..+ .++.++.+..++|.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~ 84 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA 84 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence 468999999999999999999999999774422110000 0 0011211 12333333235899
Q ss_pred EEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 91 TVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 91 avi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++-+... .....+++.|.+.|++.++.+++
T Consensus 85 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 85 VIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 8876532 12335667777788887776554
No 238
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.93 E-value=0.65 Score=42.33 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=52.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-------------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP------------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~------------- 98 (306)
+|.|+|++|-.|+...+.|++.|++++ +++... .++.-..++.++.+..++|.++-+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 589999999999999999999999976 444331 1222233455555443479998765321
Q ss_pred -----hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -----GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -----~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+.+. +.+++
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss 100 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARL-VHIST 100 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence 1344556666777754 44454
No 239
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.86 E-value=1 Score=39.93 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|+|+ |..|....++|...|+.-+..+|+.....+-.+- ..|. .+.+-..+..+++-+-..+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 578999999 9999999999999999755688887422111111 1111 111111222355555544444
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++.. .+...|+. +..-. .....+.++|+++++.++-..+.|
T Consensus 100 i~~~~~~~~~-~~~D~Vi~-~~d~~--~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VTAENLELLI-NNVDLVLD-CTDNF--ATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CCHHHHHHHH-hCCCEEEE-CCCCH--HHHHHHHHHHHHcCCCEEEEEecc
Confidence 3334444444 35676554 33221 223344467888888777555444
No 240
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.82 E-value=0.28 Score=45.89 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---------------------------ecCeeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---------------------------HLDLPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---------------------------i~Gip~y~sl~el 82 (306)
.++|+|+|+ |.||.-....+...|++++ ..|+.....+ ...+....+++++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 358999999 9999988888888899965 4443321000 0122355667554
Q ss_pred hhcCCCcEEEEecCchhHHH--HHHHHHHc--CCCEEEE-ecCCCChhHH
Q psy8894 83 RDATGAEATVIYVPPPGAAK--AIHEALDA--EMPLIVC-ITEGIPQLDM 127 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~~~--~~~e~~~~--Gi~~vvi-~t~Gf~e~~~ 127 (306)
. +.|+++-++|.+...+ +..++.+. .-..++. -|++++..+.
T Consensus 83 -~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 83 -A--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred -C--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 3 3899999998765533 33333332 1223333 3556665543
No 241
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.70 E-value=4 Score=42.54 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC--c------eecCeecc-CC------HHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG--K------THLDLPVF-NT------VKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g--~------~i~Gip~y-~s------l~el~~~~~iDla 91 (306)
++++|.|.|++|-.|+...+.|.+. ++++++........ . ...++..+ .+ +.++....++|++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 4689999999999999999988876 67876432211000 0 01122222 12 3333322359998
Q ss_pred EEecCch------------------hHHHHHHHHHHcC-CCEEEEecC
Q psy8894 92 VIYVPPP------------------GAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 92 vi~vp~~------------------~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
|-+.... .+..+++.|.+.| ++.++.+++
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8654321 1234567777777 887776665
No 242
>PRK12320 hypothetical protein; Provisional
Probab=91.70 E-value=1.2 Score=46.95 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-C-----CHHhhhhcCCCcEEEEecCch-------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-N-----TVKEARDATGAEATVIYVPPP------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-~-----sl~el~~~~~iDlavi~vp~~------- 98 (306)
+|.|.|++|-.|+...+.|.+.|+++++..+... .....++..+ . .+.++.. ++|.++-+.+..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~-~~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v 78 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH-DALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV 78 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh-hcccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence 7999999999999999999999999876544221 0000122111 1 2334433 389999887632
Q ss_pred ---hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 99 ---GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 99 ---~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.+..+++.|.+.|++ ++.+++.
T Consensus 79 Nv~Gt~nLleAA~~~GvR-iV~~SS~ 103 (699)
T PRK12320 79 GITGLAHVANAAARAGAR-LLFVSQA 103 (699)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence 244577888889997 4545554
No 243
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=91.70 E-value=0.59 Score=45.85 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-----------CC--------------CCc--eecC--eeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-----------GK--------------GGK--THLD--LPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-----------~~--------------~g~--~i~G--ip~y~- 77 (306)
.+|+|.|+ |+.|+...+.+.+. .++++ .||. ++ .++ .+.| ++++.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~ 138 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSD 138 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEc
Confidence 68999999 99999999988765 34565 3443 11 011 1233 33443
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 139 ~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 139 RNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred CCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 4677763 236999999999999999999999999998876
No 244
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.60 E-value=5.9 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
++|.|.|++|-.|+...+.|.+.|++++..++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 57999999999999999999999987554444
No 245
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.49 E-value=1.2 Score=40.47 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=51.0
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCcee--cCeecc--CCHHhhhhcCCCcEEEEecCch---------
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKTH--LDLPVF--NTVKEARDATGAEATVIYVPPP--------- 98 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~i--~Gip~y--~sl~el~~~~~iDlavi~vp~~--------- 98 (306)
|.|.|++|-.|+...+.|.+.|+++++... +... ... .++..+ ..+.+... ++|.++-+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~ 77 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAG-ANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE 77 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCC-CcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence 579999999999999999999999875432 2210 111 111111 12222222 489988766321
Q ss_pred -----------hHHHHHHHHHHcCCC-EEEEecC
Q psy8894 99 -----------GAAKAIHEALDAEMP-LIVCITE 120 (306)
Q Consensus 99 -----------~~~~~~~e~~~~Gi~-~vvi~t~ 120 (306)
.+..+++.|.+.|++ .+++.++
T Consensus 78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 145667778888884 4555443
No 246
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.49 E-value=1.4 Score=37.17 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=54.8
Q ss_pred hHHHHHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch----hHHHHHHHHHHcCCCEEEEe
Q psy8894 44 TFHSKQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP----GAAKAIHEALDAEMPLIVCI 118 (306)
Q Consensus 44 ~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~----~~~~~~~e~~~~Gi~~vvi~ 118 (306)
+...+.|++.||+++++ ..... +|+ +..+.+ +++|++.+|.-.. .++++++.|.+.|...+.++
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~ 98 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVV 98 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEe
Confidence 34456777789997632 22111 111 223323 3699999986554 45667788888999998866
Q ss_pred cCCC-ChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 119 TEGI-PQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 119 t~Gf-~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
..|. +.++.+ .-+++|+ ++.+|.+
T Consensus 99 ~GGvip~~d~~-----~l~~~G~~~if~pgt 124 (143)
T COG2185 99 VGGVIPPGDYQ-----ELKEMGVDRIFGPGT 124 (143)
T ss_pred ecCccCchhHH-----HHHHhCcceeeCCCC
Confidence 6665 333322 2367887 8888865
No 247
>PLN02650 dihydroflavonol-4-reductase
Probab=91.39 E-value=3.8 Score=38.76 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 34689999999999999999999999997654
No 248
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.30 E-value=0.19 Score=41.58 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecC--e--eccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLD--L--PVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~G--i--p~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.+++.|+|+ |.+++.+...|.+.|++-+..+|++... + +..+ + --|.++.+...+ .|++|-++|...
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-SSTTS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEecCCCC
Confidence 3689999999 9999999999999999966789987411 0 1111 1 123344444444 899999988765
Q ss_pred HHHHHHHHHHcC
Q psy8894 100 AAKAIHEALDAE 111 (306)
Q Consensus 100 ~~~~~~e~~~~G 111 (306)
. .+-++.++..
T Consensus 88 ~-~i~~~~~~~~ 98 (135)
T PF01488_consen 88 P-IITEEMLKKA 98 (135)
T ss_dssp T-SSTHHHHTTT
T ss_pred c-ccCHHHHHHH
Confidence 4 3334444444
No 249
>PRK08223 hypothetical protein; Validated
Probab=91.28 E-value=1.6 Score=41.11 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|...|..-+..+|.......-..-.++.+.+++ ..+..|++=|...+..
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 578999999 8899999999999999866688876532211111121111111 1122355555555544
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc------eecCccc-cccCCCC--CCCC--
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG------IIAPEQC-KIGIMPG--HIHQ-- 167 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G------i~~~~~~-~~~~~~~--~~~~-- 167 (306)
...+.+++.++ +...|+-.+..|+ -+...++.+.|+++++.++...+.| ++.|... .-..++. ..++
T Consensus 106 l~~~n~~~ll~-~~DlVvD~~D~~~-~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~~p~~~~~f~~~~~~~~~~ 183 (287)
T PRK08223 106 IGKENADAFLD-GVDVYVDGLDFFE-FDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPGGMSFDDYFDLSDGMNEVE 183 (287)
T ss_pred cCccCHHHHHh-CCCEEEECCCCCc-HHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCCCCchhhhcCCCCCCCchh
Confidence 44555555553 5676654333332 1233444567899998877766554 3333211 0111221 0122
Q ss_pred ------CCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhc
Q psy8894 168 ------RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLK 220 (306)
Q Consensus 168 ------~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~ 220 (306)
+|.+.-.+++|-++..-. +-..++-|.+..+..|-- ..+-..|.+..+..
T Consensus 184 ~~~~~~~~~~p~c~~~gvl~~~~~-~~~~~~~~p~~g~~~g~~--g~~~a~E~ik~l~g 239 (287)
T PRK08223 184 KAVRFLAGLAPSMLHRGYLADPSR-VDLENRTGPSTGLACQLC--AGVVATEVLKILLG 239 (287)
T ss_pred hhcccCCcCCCccccCCccccccc-cccccccCCCccchHHHH--HHHHHHHHHHHHhC
Confidence 466666677777732211 112344455554444432 33456677777754
No 250
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=91.14 E-value=2.8 Score=40.16 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHHcCCeEEEeeCCCCC--Cc------eecCeeccCCHHhhhhcCCCcEEEEecCchhH-HHHHHHHHHc-CCCEEE
Q psy8894 47 SKQAIEYGTKVVGGVSPGKG--GK------THLDLPVFNTVKEARDATGAEATVIYVPPPGA-AKAIHEALDA-EMPLIV 116 (306)
Q Consensus 47 ~~~l~~~g~~vv~~VnP~~~--g~------~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~-~~~~~e~~~~-Gi~~vv 116 (306)
.++|.+.||++. ..|++.. .+ .-.|....++..++.+. .|++++++|.... .++++.+.+. .-..+|
T Consensus 36 ArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIV 112 (341)
T TIGR01724 36 AIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVPENAVI 112 (341)
T ss_pred HHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCCCCCEE
Confidence 568888899964 5554321 01 12478888899999876 9999999998775 4665655543 223355
Q ss_pred EecCCCChhHH
Q psy8894 117 CITEGIPQLDM 127 (306)
Q Consensus 117 i~t~Gf~e~~~ 127 (306)
|-++=.+.+..
T Consensus 113 ID~STIsP~t~ 123 (341)
T TIGR01724 113 CNTCTVSPVVL 123 (341)
T ss_pred EECCCCCHHHH
Confidence 43433344443
No 251
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.05 E-value=2.6 Score=34.74 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-----------CHHhhhhcCCCcEEEEecCchhH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-----------TVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-----------sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+|.|+|+ |..|....++|...|+.-+..+|+......-.+-..|- .+.+...+..|++-+-..+....
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899999 99999999999999997556888875322111111111 12222222234555444433322
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
.....+.. .+...++. +... .+ ....+.++|+++++.++...+.|+.
T Consensus 80 ~~~~~~~~-~~~diVi~-~~d~-~~-~~~~l~~~~~~~~i~~i~~~~~g~~ 126 (143)
T cd01483 80 EDNLDDFL-DGVDLVID-AIDN-IA-VRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred hhhHHHHh-cCCCEEEE-CCCC-HH-HHHHHHHHHHHcCCCEEEEcCCCcE
Confidence 22222222 35665443 4332 22 2333446789999988887777643
No 252
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.04 E-value=0.89 Score=40.38 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+.++|.|||+ |++|..-.+.|.+.|.++. .|+|..
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL 43 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 4579999999 8888777889999998765 788864
No 253
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.03 E-value=1.3 Score=40.67 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Cc---eec---CeeccC-------CHHhhhhcCCCcEEEEecCc
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GK---THL---DLPVFN-------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~---~i~---Gip~y~-------sl~el~~~~~iDlavi~vp~ 97 (306)
+|.|+|++|..|+...+.|.+.|++++..-.+... .. .+. ++..+. +++++....++|.++.+...
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 58899999999999999999999997633221110 00 111 122221 23333332358998866532
Q ss_pred ------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.+++.++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 12345667777888887776554
No 254
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.94 E-value=0.33 Score=46.18 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-e-------ecCe--eccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-T-------HLDL--PVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-~-------i~Gi--p~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.+++++|+|+ |.+++.....+.. .+++.+..+|+..... + ..++ ..|.+++++..+ .|+++.+||.
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE--ADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEccCC
Confidence 4688999999 9999988876654 4888777888764211 1 1133 457788888765 9999999997
Q ss_pred hhHHHHHHHHHHcCCCEEEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi 117 (306)
. .+-.- ++++.|.+..-+
T Consensus 203 ~-~p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAV 220 (325)
T ss_pred C-CcchH-HhcCCCcEEEec
Confidence 6 44444 888889885554
No 255
>PLN02686 cinnamoyl-CoA reductase
Probab=90.85 E-value=14 Score=35.45 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
.+.++|.|.|++|-.|+...+.|.+.|++++..+.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 33678999999999999999999999999765443
No 256
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.72 E-value=4.7 Score=38.15 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC------CCcee---cCeeccC----CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK------GGKTH---LDLPVFN----TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~------~g~~i---~Gip~y~----sl~el~~~~~iDlavi~vp~ 97 (306)
++|.|+|+ |-+|.+..-.|.+.|..+...+.+++ .|-.+ .+.+.++ .-.+... .+|++++++-+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~--~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALG--PADLVIVTVKA 77 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcC--CCCEEEEEecc
Confidence 48999999 99999888788888843443344432 11111 1200111 1112222 39999999999
Q ss_pred hhHHHHHHHHHHc-C-CCEEEEecCCCChhH
Q psy8894 98 PGAAKAIHEALDA-E-MPLIVCITEGIPQLD 126 (306)
Q Consensus 98 ~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e~~ 126 (306)
....++++..... + -..|++++-|..-.+
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 9999999988875 2 334677888986444
No 257
>KOG2711|consensus
Probab=90.57 E-value=0.85 Score=43.79 Aligned_cols=248 Identities=16% Similarity=0.134 Sum_probs=125.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH----c-CCe---EEEe---------------eCCCCCCce-e------cCeeccC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE----Y-GTK---VVGG---------------VSPGKGGKT-H------LDLPVFN 77 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~----~-g~~---vv~~---------------VnP~~~g~~-i------~Gip~y~ 77 (306)
..|.+|++||. |+=|+...+.+.+ + -|+ ..|. +|-++..-+ + ..+.+.+
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 44789999998 9999887654433 2 111 1111 221110000 1 1345566
Q ss_pred CHHhhhhcCCCcEEEEecCchhHHHHHHHHHH---cCCCEEEEecCCCCh--hH--HHHHHHHHHHhcCC---eEEccCC
Q psy8894 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALD---AEMPLIVCITEGIPQ--LD--MVKVKHRLIRQSKS---RLIGPNC 147 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~---~Gi~~vvi~t~Gf~e--~~--~~~~~~~~ar~~gi---~iiGPNc 147 (306)
++.+...+ .|+.|..+|......+++++.. .++.+|= ++-||.- ++ ..-+-+-+-++.|+ -+.|||-
T Consensus 98 dl~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~~~~aIS-L~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNi 174 (372)
T KOG2711|consen 98 DLVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKPGATAIS-LIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANI 174 (372)
T ss_pred hHHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCCCCeEEE-eecceeccCCCCceeehHHHHHHHhCCCceeecCCch
Confidence 77777654 9999999999999999998875 4677644 5778852 22 11111123456665 6778886
Q ss_pred CceecCcc---ccccCCCCCC--------CCCCCEEEEecChhhHHHHHHHHH---hCCCceEEEEecCCCC---CCCCC
Q psy8894 148 PGIIAPEQ---CKIGIMPGHI--------HQRGCVGVVSRSGTLTYEAVHQTT---QVGLGQTLCVGIGGDP---FNGTN 210 (306)
Q Consensus 148 ~Gi~~~~~---~~~~~~~~~~--------~~~G~va~vSqSG~~~~~~~~~~~---~~g~g~s~~vs~Gn~~---~~dv~ 210 (306)
..=+.... ..++..+... ...-..-++-++-.-+.++...+. .-+-||.-....||.. +.-..
T Consensus 175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G 254 (372)
T KOG2711|consen 175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG 254 (372)
T ss_pred HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence 43222111 1222221100 111134455555555555544332 4566888888888761 11122
Q ss_pred HHHH---HHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHH
Q psy8894 211 FIDC---LEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKID 276 (306)
Q Consensus 211 ~~d~---l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a 276 (306)
+.+. .++|-.-.... .|.|+-+ +.++--....|.|.+-.-.-+-.--|-.+ .+..+....-+
T Consensus 255 l~Em~~F~~~f~p~~~~~---t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~-QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 255 LLEMIKFATHFYPGSKPT---TFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKL-QGPATAKEVYE 330 (372)
T ss_pred HHHHHHHHHHhCCCCCcc---eeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcc-cCcHHHHHHHH
Confidence 3333 33333332222 2677744 22222334445554211000100111111 11235666778
Q ss_pred HHHHcCC
Q psy8894 277 ALEKAGV 283 (306)
Q Consensus 277 ~~~~aGv 283 (306)
+|++.|.
T Consensus 331 ~L~~~~l 337 (372)
T KOG2711|consen 331 LLQKKGL 337 (372)
T ss_pred HHHHcCh
Confidence 9999998
No 258
>PLN02306 hydroxypyruvate reductase
Probab=90.45 E-value=0.51 Score=46.20 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHH-HcCCeEEEeeCCCCCCc-e----ecC------------eeccCCHHhhhhcCCCcE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAI-EYGTKVVGGVSPGKGGK-T----HLD------------LPVFNTVKEARDATGAEA 90 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~VnP~~~g~-~----i~G------------ip~y~sl~el~~~~~iDl 90 (306)
.-++|.|+|. |+.|+...+.+. .+|++++ ..||..... + ..| ...+.+++++..+ .|+
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDi 239 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADV 239 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCE
Confidence 3589999999 999999999885 7899976 667653100 0 111 1223589999876 999
Q ss_pred EEEecCc-hhHHHHH--HHHHHcCCCEEE
Q psy8894 91 TVIYVPP-PGAAKAI--HEALDAEMPLIV 116 (306)
Q Consensus 91 avi~vp~-~~~~~~~--~e~~~~Gi~~vv 116 (306)
+++.+|- +.+..++ +....++-.+++
T Consensus 240 V~lh~Plt~~T~~lin~~~l~~MK~ga~l 268 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKERLALMKKEAVL 268 (386)
T ss_pred EEEeCCCChhhhhhcCHHHHHhCCCCeEE
Confidence 9998884 3344444 233334444444
No 259
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.42 E-value=1.6 Score=36.17 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred ChHHH-HHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC----chhHHHHHHHHHHcCCCEEE
Q psy8894 43 GTFHS-KQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP----PPGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 43 G~~~~-~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp----~~~~~~~~~e~~~~Gi~~vv 116 (306)
|+... ..|+..||+++.. ++-. .-.-++.+.+ +++|++.+|.- .+..+++++++.+.|.+.+.
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s----------~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~ 86 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQT----------PEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL 86 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCC----------HHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCE
Confidence 44444 3555679997631 1111 1111333333 47999999853 45566777777777764444
Q ss_pred EecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 117 CITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 117 i~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
++..|...++..+ ..++.|+ ++++|.+
T Consensus 87 vivGG~~~~~~~~----~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 87 VVVGGVIPPQDFD----ELKEMGVAEIFGPGT 114 (132)
T ss_pred EEEeCCCChHhHH----HHHHCCCCEEECCCC
Confidence 4566643332221 2478898 8999887
No 260
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.27 E-value=2.1 Score=40.50 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---c----Cee-ccC------CHHhhhhcCCCcEEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---L----DLP-VFN------TVKEARDATGAEATVIY 94 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~----Gip-~y~------sl~el~~~~~iDlavi~ 94 (306)
.++|.|.|++|-.|+...+.|.+.|+++++. +.+... ... . .+. +.. ++.++.+..++|.+|-+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGY-SLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEE-eCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 4789999999999999999999999997743 322100 100 0 111 111 23344433358988866
Q ss_pred cCc------------------hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 95 VPP------------------PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 95 vp~------------------~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
... .....+++.|.+.+ ++.++.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 531 12345667776666 777776665
No 261
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.25 E-value=2 Score=41.31 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH-------------hhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK-------------EARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~-------------el~~~~~iDlavi~vp 96 (306)
..+|+|+|+ |..|..+.++|...|..-+..||+......-..-..+-+-+ +...+..+++-+....
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 99999999999999997556888864221111111111111 1111123555554444
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.....+.+++.+ .+...|+..+..+ +...++.++|++.++.++-..+.|
T Consensus 103 ~~~~~~~~~~~~-~~~DlVid~~Dn~---~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVTAEELEELV-TGVDLIIDATDNF---ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCCHHHHHHHH-cCCCEEEEcCCCH---HHHHHHHHHHHHhCCCEEEEeeee
Confidence 444445555554 3467666443333 223344567888888776555544
No 262
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.23 E-value=1.8 Score=38.29 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccCC------------HHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFNT------------VKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~s------------l~el~~~~~iDlavi~vp 96 (306)
..+|.|+|+ |-.|....++|...|..-+..+|....... +.....|.. +.+-..+..||+-|....
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 569999999999999986668887642211 111111211 111122224666555443
Q ss_pred chh--HHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 97 PPG--AAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 97 ~~~--~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
... ..+..++..+ ....|+ .+.. +.+ ....+.++|+++++.++-..|.|+.-
T Consensus 98 ~~~~~~~~~~~~~~~-~~dvVi-~~~d-~~~-~~~~ln~~c~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 98 EDSLSNDSNIEEYLQ-KFTLVI-ATEE-NYE-RTAKVNDVCRKHHIPFISCATYGLIG 151 (198)
T ss_pred cccccchhhHHHHHh-CCCEEE-ECCC-CHH-HHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 222 1233333332 456544 3433 222 23334568999999888888877764
No 263
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.17 E-value=0.64 Score=39.62 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+.++|.|+|. |+.|..-.+.|++.|.++. .|+|..
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI 46 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence 4588999999 8777777788899999875 678864
No 264
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=90.16 E-value=12 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
++|.|.|++|-.|+...+.|++.|.+.+..++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 36999999999999999999998876443444
No 265
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=90.08 E-value=0.91 Score=42.26 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-cCeeccCCHHhhhhcCCCcEEEEecCc----------h-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-LDLPVFNTVKEARDATGAEATVIYVPP----------P- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~----------~- 98 (306)
++|.|.|++|-.|+...+.|.+.| +++ .++... ..+ .++.-+..+.++.+..++|++|=+.-. +
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHH
Confidence 379999999999999999998888 655 444321 111 123333345555554358988854211 1
Q ss_pred -------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++. +.+|+
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~-v~~Ss 104 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWV-VHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence 1345777888889874 44565
No 266
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.01 E-value=2.4 Score=38.12 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|+.-+..+|+.....+-.+- ..|. .+.+-..+..|++-+...+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 478999999 8899999999999999866688876522111111 1111 011111222466655555544
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++..+ +...|+. +..-.+ ....+.++|+++++.++--.+.|
T Consensus 100 i~~~~~~~~~~-~~DvVi~-~~d~~~--~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LDAENAEELIA-GYDLVLD-CTDNFA--TRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eCHHHHHHHHh-CCCEEEE-cCCCHH--HHHHHHHHHHHcCCCEEEEEecc
Confidence 43444444433 4675554 433222 23344567888888766544443
No 267
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.94 E-value=2.4 Score=38.75 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|..+.++|...|..-+..||+......-.+-..+-+ +.+-..+..|++-|...+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 3589999999 889999999999999875567887653221111111111 1111112235655555544
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
....+.+++..+ +...|+..+..+ +....+.++|+++++.++--.+.
T Consensus 110 ~i~~~~~~~~~~-~~DiVi~~~D~~---~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 110 RLDDDELAALIA-GHDLVLDCTDNV---ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred cCCHHHHHHHHh-cCCEEEecCCCH---HHHHHHHHHHHHhCCEEEEeeec
Confidence 433444444433 466555433222 23344456788888877754444
No 268
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.93 E-value=1.3 Score=43.35 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCcee-----------------cCeeccCC--HHhhhhcCCCcE
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTH-----------------LDLPVFNT--VKEARDATGAEA 90 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i-----------------~Gip~y~s--l~el~~~~~iDl 90 (306)
+|+|+|. |.+|......+. .|++++ ++|.+. ...-. .+.....+ .+++... .|+
T Consensus 2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~--ad~ 76 (388)
T PRK15057 2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD--ADY 76 (388)
T ss_pred EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC--CCE
Confidence 6999999 999987765444 589876 554432 10000 11122122 4444443 999
Q ss_pred EEEecCch
Q psy8894 91 TVIYVPPP 98 (306)
Q Consensus 91 avi~vp~~ 98 (306)
+++++|..
T Consensus 77 vii~Vpt~ 84 (388)
T PRK15057 77 VIIATPTD 84 (388)
T ss_pred EEEeCCCC
Confidence 99999965
No 269
>KOG1502|consensus
Probab=89.90 E-value=1.7 Score=41.63 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----------------ecCeeccCCHHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----------------HLDLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----------------i~Gip~y~sl~el~~~~~iDla 91 (306)
..++|.|.||||-.|+.+.+.|++.||++.+-|-.....+. ..++.-|.++++..+. +|.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g--cdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG--CDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--CCEE
Confidence 45789999999999999999999999998876643221000 1234445566666654 7777
Q ss_pred EE-ecCc----------------hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 92 VI-YVPP----------------PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 92 vi-~vp~----------------~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
+= ..|. ..+..+++.|.+.. ||.++ +|+
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TS 128 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTS 128 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eec
Confidence 63 2221 23456788888877 99987 565
No 270
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.83 E-value=0.14 Score=44.60 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=52.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---------------------------eecCeeccCCHHhhhh
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---------------------------THLDLPVFNTVKEARD 84 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---------------------------~i~Gip~y~sl~el~~ 84 (306)
+|+|+|+ |.||+.....+...|+++. .+|++.... ....+....+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 6999999 9999988888888899965 555543110 012455666777776
Q ss_pred cCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 85 ATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 85 ~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
. .|+++-++|.+.- .+++.++-+. .-..++. -|++++-.+
T Consensus 78 ~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 78 D--ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred h--hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 3 8999999986543 3455555543 2333332 244555443
No 271
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.83 E-value=1.5 Score=42.20 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc---e---------ecC--eeccC--CH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK---T---------HLD--LPVFN--TV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~---~---------i~G--ip~y~--sl 79 (306)
.||+|-|+ |+.|+.+.+.+.+. ++++++.-||... |. + +.| +++|. +.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 48999999 99999999986644 7888855443210 10 1 233 34553 57
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+++|= +.++|+++.|+......+.+...++.|.+.|++ |.
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 88873 246999999999999999999999999998775 54
No 272
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=89.82 E-value=3.6 Score=39.49 Aligned_cols=110 Identities=17% Similarity=0.053 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--------cCC--eEEEeeCCCCCCc-eecCee---ccCCH-----HhhhhcCCCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--------YGT--KVVGGVSPGKGGK-THLDLP---VFNTV-----KEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--------~g~--~vv~~VnP~~~g~-~i~Gip---~y~sl-----~el~~~~~iD 89 (306)
+..+|+|+|. |..|+...+.+++ .|. ++++..+.+..-. .+.+.+ ...+. .++....++|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 4578999999 9999987665443 234 4665566543111 122222 22233 3444434688
Q ss_pred EEEEecCc--hhH--HHHHHHHHHcCCCEEEEecCCCCh-hH-HHHHHHHHHHhcCCeEE
Q psy8894 90 ATVIYVPP--PGA--AKAIHEALDAEMPLIVCITEGIPQ-LD-MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 90 lavi~vp~--~~~--~~~~~e~~~~Gi~~vvi~t~Gf~e-~~-~~~~~~~~ar~~gi~ii 143 (306)
++|-.++. +.. .+.+.+++++|.+. .|+.=.. .. -.++ .++|++.|..+.
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~~~~el-~~~A~~~g~~l~ 136 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLALHYHEL-REAAEKNGVKLL 136 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHhhHHHH-HHHHHHhCCeEE
Confidence 88866555 333 48899999999984 2553211 11 1233 357888886554
No 273
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=89.66 E-value=1.6 Score=35.09 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc------hhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP------PGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~------~~~~~~~ 104 (306)
++|.|+|- |-...-..+.+++.|++.+ .||.+. +.. -. +... .|-++..-+. -....++
T Consensus 3 kkvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~-----s~---~~~~---ad~~~~~~~~~~~~~yl~~e~I~ 67 (110)
T PF00289_consen 3 KKVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTV-----ST---HVDM---ADEAYFEPPGPSPESYLNIEAII 67 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTT-----GH---HHHH---SSEEEEEESSSGGGTTTSHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hcc-----cc---cccc---cccceecCcchhhhhhccHHHHh
Confidence 67888886 5555555778888999976 444432 111 00 1111 3444322111 3456677
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+-+.+.|+..++ ---||-.+. .++. +.+++.|+.++||+
T Consensus 68 ~ia~~~g~~~i~-pGyg~lse~-~~fa-~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 68 DIARKEGADAIH-PGYGFLSEN-AEFA-EACEDAGIIFIGPS 106 (110)
T ss_dssp HHHHHTTESEEE-STSSTTTTH-HHHH-HHHHHTT-EESSS-
T ss_pred hHhhhhcCcccc-cccchhHHH-HHHH-HHHHHCCCEEECcC
Confidence 777778888766 233442222 2222 35679999999997
No 274
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.45 E-value=1.6 Score=43.02 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..-++|+|+|+ |+.|+.+.+.++.+|.+++.. +||...- ....|..+. +++++... .|++|.++....+..
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~--aDVVItaTG~~~vI~ 265 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKI--GDIFITATGNKDVIR 265 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhc--CCEEEECCCCHHHHH
Confidence 35679999999 999999999999999996532 5664310 012355444 46776654 899998887655433
No 275
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.31 E-value=1.5 Score=39.62 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCc---eecCeecc---CC----HHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGK---THLDLPVF---NT----VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~---~i~Gip~y---~s----l~el~~~~~iDlavi~vp~~ 98 (306)
++++|+|+ |+.|..+.+.|.+.|++++ .|+... ..+ +..+..++ .+ |.++.- .+.|+++.++..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCC
Confidence 57999999 9999999999999999987 444332 101 11222222 22 555532 2599999999987
Q ss_pred hHHHHHHHHH-H-cCCCEEEE
Q psy8894 99 GAAKAIHEAL-D-AEMPLIVC 117 (306)
Q Consensus 99 ~~~~~~~e~~-~-~Gi~~vvi 117 (306)
..--++-.+. + .|++.+|.
T Consensus 78 ~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 7666554444 3 59999886
No 276
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.14 E-value=3.8 Score=34.17 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=53.5
Q ss_pred CChHHH-HHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe----cCchhHHHHHHHHHHcCCCEE
Q psy8894 42 QGTFHS-KQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----VPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 42 ~G~~~~-~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----vp~~~~~~~~~e~~~~Gi~~v 115 (306)
.|+... ..|++.||+++.. ++-.. +++ ++.+.+ +++|++-+. ..-....++++++.+.|.+.+
T Consensus 16 iGk~iv~~~l~~~GfeVi~LG~~v~~--e~~--------v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 16 VGNKILDHAFTNAGFNVVNLGVLSPQ--EEF--------IKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred HhHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 355444 3566679997732 22211 111 334433 479988764 233446677778888887544
Q ss_pred EEecCC---CChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 116 VCITEG---IPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 116 vi~t~G---f~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
.++-.| +++++..+.. +..++.|+ ++.||.+
T Consensus 85 ~vivGG~~vi~~~d~~~~~-~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 85 LLYVGGNLVVGKQDFPDVE-KRFKEMGFDRVFAPGT 119 (134)
T ss_pred EEEecCCcCcChhhhHHHH-HHHHHcCCCEEECcCC
Confidence 444555 4555543322 23588887 7888876
No 277
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.14 E-value=2.7 Score=40.64 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|....++|...|+.-+..||+......-.+-..+-+ ..+-..+..|++-|-..+.
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3579999999 889999999999999986668887652211111111111 1111111235665555444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
....+.+.+.+ .+...|+..+..+ ....++.++|++.++.++--.+.|+
T Consensus 106 ~i~~~~~~~~~-~~~DvVvd~~d~~---~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 106 RLTWSNALDEL-RDADVILDGSDNF---DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred ecCHHHHHHHH-hCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 43333333433 3567655433333 2223344678888887775554444
No 278
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.12 E-value=2.3 Score=38.36 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVV 58 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv 58 (306)
+.+++.|.|+++..|+...+.|.+.|++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~ 32 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVF 32 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence 346899999999999999999999999976
No 279
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.10 E-value=3 Score=39.83 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=57.1
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCC-CCc--eec------CeeccCC----HHhhhhcCCC
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGK-GGK--THL------DLPVFNT----VKEARDATGA 88 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~-~g~--~i~------Gip~y~s----l~el~~~~~i 88 (306)
+.-+++.++|+|+|+.|+.|+.....+...+ .+++ .+|... .+. ++. .+..+.+ .+++. +.
T Consensus 2 ~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~---ga 77 (321)
T PTZ00325 2 RPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR---GA 77 (321)
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC---CC
Confidence 3456778899999999999998876666444 3443 555321 121 110 1222212 23333 48
Q ss_pred cEEEEecCc--h--------------hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 89 EATVIYVPP--P--------------GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 89 Dlavi~vp~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
|++|++... . .+.++++.+.++|++.+++.++..
T Consensus 78 DvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 78 DLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 999986433 1 234466677788999998877653
No 280
>PRK06046 alanine dehydrogenase; Validated
Probab=89.00 E-value=0.63 Score=44.34 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc-----ee---cC--eeccCCHHhhhhcCCCcEEEEecC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK-----TH---LD--LPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~-----~i---~G--ip~y~sl~el~~~~~iDlavi~vp 96 (306)
..+++++|+|+ |.+++.+.+.+... +++.+...|+..... ++ .| +.+|.+++++.+ .|+++.+||
T Consensus 127 ~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTp 202 (326)
T PRK06046 127 KDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTP 202 (326)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecC
Confidence 34789999999 99999998877754 788887888864211 11 24 456888988874 899999999
Q ss_pred chhHHHHH-HHHHHcCCCEEEE
Q psy8894 97 PPGAAKAI-HEALDAEMPLIVC 117 (306)
Q Consensus 97 ~~~~~~~~-~e~~~~Gi~~vvi 117 (306)
... +++ .+.++.|.+..-+
T Consensus 203 s~~--P~~~~~~l~~g~hV~~i 222 (326)
T PRK06046 203 SRK--PVVKAEWIKEGTHINAI 222 (326)
T ss_pred CCC--cEecHHHcCCCCEEEec
Confidence 754 333 4456777764333
No 281
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.00 E-value=6.7 Score=36.88 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=82.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-------hH-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-------GA- 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-------~~- 100 (306)
-++++|+|- ..-.....+.|.+.|+++. +...-.. .+..|..++++.+++.+. .|+++.-+|+. ..
T Consensus 2 ~~~~~v~gg-d~r~~~~~~~l~~~G~~v~~~g~~~~~--~~~~g~~~~~~~~~~~~~--ad~ii~~~p~~~~~~~i~~~~ 76 (296)
T PRK08306 2 GKHIAVIGG-DARQLELIRKLVELGAKVSLVGFDQLD--HGFTGATKSSSLEEALSD--VDVIILPVPGTNDEGNVDTVF 76 (296)
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeccccc--cccCCceeeccHHHHhcc--CCEEEECCccccCCceeeccc
Confidence 368999995 3334456789999999954 3332111 234588899888887765 89999887762 11
Q ss_pred -------HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce-----ecCccc---cc--cCCCC
Q psy8894 101 -------AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI-----IAPEQC---KI--GIMPG 163 (306)
Q Consensus 101 -------~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi-----~~~~~~---~~--~~~~~ 163 (306)
.+..-+....| .++ |. |+-..... +.++++|++++ +.+.. .|.... .+ .....
T Consensus 77 ~~~~~~~~~~~l~~l~~~--~~v-~~-G~~~~~~~----~~~~~~gi~~~--~~~~~~~~~~~ns~~~aegav~~a~~~~ 146 (296)
T PRK08306 77 SNEKLVLTEELLELTPEH--CTI-FS-GIANPYLK----ELAKETNRKLV--ELFERDDVAILNSIPTAEGAIMMAIEHT 146 (296)
T ss_pred cccCCcchHHHHHhcCCC--CEE-EE-ecCCHHHH----HHHHHCCCeEE--EEeccchhhhhccHhHHHHHHHHHHHhC
Confidence 12233334445 223 33 44333222 35789999886 33322 221110 00 00000
Q ss_pred CCCCCCCEEEEecChhhHHHHHHHHHhCCC
Q psy8894 164 HIHQRGCVGVVSRSGTLTYEAVHQTTQVGL 193 (306)
Q Consensus 164 ~~~~~G~va~vSqSG~~~~~~~~~~~~~g~ 193 (306)
.....|.-.+|--.|.++..+...+...|.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga 176 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA 176 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 112234444444568899999888877654
No 282
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.92 E-value=0.98 Score=44.32 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-----eccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-----PVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-----p~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++|.|+|. |..|....+.|++.|++++ +.|++. ....-. ......+.++.+ .|++|.+.+....-+.++
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~~--~dlvV~s~gi~~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPEQ--VDLVVRSPGIKKEHPWVQ 77 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhcC--CCEEEECCCCCCCcHHHH
Confidence 57999999 9999888889999999865 677654 111100 111223333333 899888876666677788
Q ss_pred HHHHcCCC
Q psy8894 106 EALDAEMP 113 (306)
Q Consensus 106 e~~~~Gi~ 113 (306)
+|.++|++
T Consensus 78 ~A~~~g~~ 85 (418)
T PRK00683 78 AAIASHIP 85 (418)
T ss_pred HHHHCCCc
Confidence 88888876
No 283
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.90 E-value=3 Score=38.63 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.++|.|.|++|-.|+...+.|++.|++++..+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 46899999999999999999999999976544
No 284
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.87 E-value=5 Score=38.16 Aligned_cols=111 Identities=15% Similarity=0.275 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecC--eeccC-------CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLD--LPVFN-------TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~G--ip~y~-------sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|.|.|..|-.|+-....|++.|++++ .+|--..|. .+.- .+.|. -|+++.+++.||.++=|.....
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~ 79 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS 79 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence 4789999989999988899999999977 444322121 1221 23332 3677777778999997643332
Q ss_pred ------------------HHHHHHHHHHcCCCEEEEecC-----CCC------hhH--------------HHHHHHHHHH
Q psy8894 100 ------------------AAKAIHEALDAEMPLIVCITE-----GIP------QLD--------------MVKVKHRLIR 136 (306)
Q Consensus 100 ------------------~~~~~~e~~~~Gi~~vvi~t~-----Gf~------e~~--------------~~~~~~~~ar 136 (306)
+..+++.|.+.||+.++ ||+ |-+ |+. .+++++..++
T Consensus 80 VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~v-FSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~ 158 (329)
T COG1087 80 VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI-FSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAK 158 (329)
T ss_pred cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEE-EecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 34477889999999977 675 332 221 2556667778
Q ss_pred hcCCeEE
Q psy8894 137 QSKSRLI 143 (306)
Q Consensus 137 ~~gi~ii 143 (306)
..+++++
T Consensus 159 a~~~~~v 165 (329)
T COG1087 159 ANPFKVV 165 (329)
T ss_pred hCCCcEE
Confidence 8887655
No 285
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.83 E-value=8.5 Score=34.97 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|..-+..||+.....+-..-..|.. +.+-..+..|++-|...+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 468999999 889999999999999875557887642221111112211 11212223467777666655
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc-eecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG-IIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G-i~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
...+..++....+...|+. +..-.+. ...+.+.|+++++.++---..| -.+|... .|+=++++
T Consensus 90 i~~~~~~~l~~~~~D~Vvd-aiD~~~~--k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i-------------~i~di~~t 153 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVD-AIDSIRA--KVALIAYCRKRKIPVISSMGAGGKLDPTRI-------------RVADISKT 153 (231)
T ss_pred cCHhHHHHHhcCCCCEEEE-cCCCHHH--HHHHHHHHHHhCCCEEEEeCCcCCCCCCeE-------------EEccEecc
Confidence 5556667777667786654 4332221 2223457899998877532222 1223221 13333333
Q ss_pred h--hhHHHHHHHHHhCCC--ceEEEEecC
Q psy8894 178 G--TLTYEAVHQTTQVGL--GQTLCVGIG 202 (306)
Q Consensus 178 G--~~~~~~~~~~~~~g~--g~s~~vs~G 202 (306)
- .++..+-..++++|+ |+..+-|.=
T Consensus 154 ~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred ccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 3 466667777888877 455555543
No 286
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=88.68 E-value=5 Score=40.19 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC-----CCc---ee---cCee-cc-CCHHhhhh-----------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK-----GGK---TH---LDLP-VF-NTVKEARD----------- 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~-----~g~---~i---~Gip-~y-~sl~el~~----------- 84 (306)
+.++|+|.|. |+.|....+.|.+.|.++++.-|.+. .|- ++ ..++ .. .++++.++
T Consensus 236 ~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~ 314 (454)
T PTZ00079 236 EGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGK 314 (454)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCc
Confidence 4689999999 99999999999999999887644331 011 11 0000 00 11222211
Q ss_pred ---cCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceecC
Q psy8894 85 ---ATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIAP 153 (306)
Q Consensus 85 ---~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~~ 153 (306)
..++|+++-| +...-..+.++.+++.+++.|+=.+-+....+..+ +-+++|+.++ | |+-|++..
T Consensus 315 ~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~----~L~~~GI~~~-PD~~aNAGGV~vS 386 (454)
T PTZ00079 315 KPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH----LFKKNGVIFC-PGKAANAGGVAIS 386 (454)
T ss_pred CcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH----HHHHCCcEEE-ChhhhcCCCeeee
Confidence 1247887765 44455567777787889997664444443333332 3467787665 6 44466654
No 287
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.63 E-value=4.4 Score=38.57 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCC---Cc--------eecC----eeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKG---GK--------THLD----LPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~---g~--------~i~G----ip~y~sl~el~~~~~iDlav 92 (306)
+.++|+|+|+ |.+|......+...|. + +..+|.+.. +. ...+ +....+.+++. +.|++|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVI 79 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEE
Confidence 3479999998 9999877666666675 5 446665431 10 0111 23335676664 389999
Q ss_pred EecCc---------------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 93 IYVPP---------------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 93 i~vp~---------------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++... +...++++++.+.+-+++++..+.
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 96521 224566777777777765554543
No 288
>PLN02583 cinnamoyl-CoA reductase
Probab=88.54 E-value=3.1 Score=38.55 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.++|.|.|++|-.|+.+.+.|++.|+++++.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 45799999999999999999999999987554
No 289
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.52 E-value=3.1 Score=37.93 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCH-----------HhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTV-----------KEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl-----------~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|..-+..+|+......-.+-..|-+- .+...+..|++-|...+..
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 578999999 8899999999999998866688887632221111122111 1111122356655555443
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++..+ +...|+. +..- . +....+.++|+++++.++...+.|
T Consensus 103 i~~~~~~~~~~-~~DlVvd-~~D~-~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LDDAELAALIA-EHDIVVD-CTDN-V-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CCHHHHHHHhh-cCCEEEE-cCCC-H-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 33344444432 4665553 3322 1 223344567888888777554443
No 290
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=88.46 E-value=3.9 Score=33.85 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=53.7
Q ss_pred CChHHHH-HHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe----cCchhHHHHHHHHHHcCCCEE
Q psy8894 42 QGTFHSK-QAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----VPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 42 ~G~~~~~-~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----vp~~~~~~~~~e~~~~Gi~~v 115 (306)
.|+.... .|+..||+++.. ++-.. +++ ++.+.+ +++|++-++ ..-....++++.+.+.|++.+
T Consensus 14 iGkniv~~~L~~~GfeVidLG~~v~~--e~~--------v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v 82 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLGVLSPQ--EEF--------IDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDI 82 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCC
Confidence 4555544 455579997732 22111 111 334433 479998775 333455777788888887444
Q ss_pred EEecCCC---ChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 116 VCITEGI---PQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 116 vi~t~Gf---~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
.++-.|. ++++.++.+ +..++.|+ ++.+|.+
T Consensus 83 ~vivGG~~~i~~~d~~~~~-~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 83 LLYVGGNLVVGKQDFEDVE-KRFKEMGFDRVFAPGT 117 (128)
T ss_pred eEEEECCCCCChhhhHHHH-HHHHHcCCCEEECcCC
Confidence 4445554 444433322 24588998 7888875
No 291
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.37 E-value=3 Score=39.17 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~~ 98 (306)
..+|.|+|+ |-.|....++|...|..-+..+|+.....+-.+-..|-+-+++ ..+..+++-|......
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 8889999999999999866789987632222222222222221 1112356665554433
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
...+.+ .....|+ .+.. +.+. ...+.++|++.++.++--.+.|+.-.
T Consensus 98 ~~~~~l-----~~fdvVV-~~~~-~~~~-~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 98 LTTDEL-----LKFQVVV-LTDA-SLED-QLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred CCHHHH-----hcCCEEE-EecC-CHHH-HHHHHHHHHHcCCEEEEEeccccEEE
Confidence 223322 2355444 4443 3333 23345689999999999888877653
No 292
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=88.35 E-value=2.3 Score=38.53 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-------CCCC-cee-------cCeeccC-----CHHhhhhcCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-------GKGG-KTH-------LDLPVFN-----TVKEARDATGA 88 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-------~~~g-~~i-------~Gip~y~-----sl~el~~~~~i 88 (306)
+.++|+|+|. |+.|+...+.|.+.|.++++..|. +.-- +++ ..+.-|+ +-+++.. .++
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~-~~~ 107 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE-LDC 107 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee-ecc
Confidence 4689999998 999999999999999999876443 2100 010 0111121 1122222 257
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceec
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIA 152 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~ 152 (306)
|+.+-|.+....- -+.+-+..++.|+=.+-+.-..+.. ++.+++|+.++ |. +-|++.
T Consensus 108 Dvlip~a~~~~i~--~~~~~~l~a~~I~egAN~~~t~~a~----~~L~~rGi~~~-PD~~aNaGGvi~ 168 (227)
T cd01076 108 DILIPAALENQIT--ADNADRIKAKIIVEAANGPTTPEAD----EILHERGVLVV-PDILANAGGVTV 168 (227)
T ss_pred cEEEecCccCccC--HHHHhhceeeEEEeCCCCCCCHHHH----HHHHHCCCEEE-ChHHhcCcchhh
Confidence 8888887654442 2233334567554322222212222 23478887665 64 446665
No 293
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.23 E-value=1.6 Score=43.31 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred cccC-CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 25 LRLT-SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 25 ~~~~-~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
+++. ++++|.|.|++|-.|+.+.+.|++.|+++++..
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 3444 358999999999999999999999999987543
No 294
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.23 E-value=8.8 Score=36.02 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
.++|.|.|++|-.|+...+.|.+.|++++..
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999997644
No 295
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=88.07 E-value=2.3 Score=42.17 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCC---------c--------ee----------cC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGG---------K--------TH----------LD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g---------~--------~i----------~G--ip~y~--s 78 (306)
.+|+|.|. |+.|+...+.+.. .++++++.-||.... + ++ .| ++++. +
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 49999999 9999999998775 588988654453210 0 11 12 23331 4
Q ss_pred HHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++-. .++|+++.++......+.+...++.|.|.++|
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 5555532 36999999999988888899999999998886
No 296
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.06 E-value=1.1 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQ-GTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~-G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.++|.|+|+ |.+ |+...+.|.+.|.++ ..+|.+. +++.+...+ .|++|.+++...
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~V-~v~~r~~-----------~~l~~~l~~--aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNATV-TVCHSKT-----------KNLKEHTKQ--ADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCCEE-EEEECCc-----------hhHHHHHhh--CCEEEEcCCCCc
Confidence 4689999999 776 888899999999874 4677542 345555554 899999998865
No 297
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.05 E-value=1.2 Score=43.89 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc------e--ecCeeccC-C-HHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK------T--HLDLPVFN-T-VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~------~--i~Gip~y~-s-l~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|+|+ |+.|....+.|.+.|+++. .++++.... + -.|+.++. + .++... ++|++|.++...
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence 3578999999 6699888899999999975 677753100 0 11444332 2 223333 389998876655
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
..-+.+.+|.+.|++
T Consensus 80 ~~~~~~~~a~~~~i~ 94 (450)
T PRK14106 80 LDSPPVVQAHKKGIE 94 (450)
T ss_pred CCCHHHHHHHHCCCc
Confidence 555566766666654
No 298
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.92 E-value=5.9 Score=36.32 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCCChH--HHHHHHHcCCeEEEeeCCCCCC------------ceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTF--HSKQAIEYGTKVVGGVSPGKGG------------KTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~--~~~~l~~~g~~vv~~VnP~~~g------------~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
.+|++|.- ..+|.. +.+.|+++|++-...|||+..- +-+.+.++|++|+|+..+ +|+++=++
T Consensus 5 i~iVLVep-~~~gNIG~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d--~~~v~aTt 80 (242)
T COG0565 5 IRIVLVEP-SHPGNIGSVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALAD--CDLVVATT 80 (242)
T ss_pred cEEEEEcC-CCCccHHHHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcC--CCEEEEec
Confidence 46777876 344544 3689999999966699998731 124578899999998875 88876654
No 299
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=87.88 E-value=1.6 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
|.|+|++|-.|+...+.|++.|++++.....+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~ 32 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSS 32 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccc
Confidence 68999999999999999999999976444433
No 300
>PLN02494 adenosylhomocysteinase
Probab=87.86 E-value=2 Score=43.21 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|+ |+.|+...+.++.+|.+++.. ++|.... ....|..+. +++++... .|+++.++....+.. -+.
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~--ADVVI~tTGt~~vI~-~e~ 327 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSE--ADIFVTTTGNKDIIM-VDH 327 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhh--CCEEEECCCCccchH-HHH
Confidence 3589999999 999999999999999996532 4553210 112355544 57787665 899998777654321 122
Q ss_pred HHHcCCCEEEEecCCC-ChhHHHHH
Q psy8894 107 ALDAEMPLIVCITEGI-PQLDMVKV 130 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf-~e~~~~~~ 130 (306)
.....-.++++....| .|-+...+
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHH
Confidence 2223334444434443 34444443
No 301
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=87.85 E-value=2.8 Score=40.50 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------Cc---e---------ecC--eecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------GK---T---------HLD--LPVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y--~sl~ 80 (306)
.||+|-|+ |+.|+...+.+.+. ++++++.-|+... |. + +.| ++++ ++.+
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999886654 6888754222110 10 1 223 3444 2577
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL 119 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe
Confidence 7773 236999999999999999999999999998775
No 302
>PLN02235 ATP citrate (pro-S)-lyase
Probab=87.82 E-value=4.3 Score=40.22 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCC--CceEEEEecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEeeC--C---
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVG--LGQTLCVGIGGDPFNGTNFIDCLEVFL----KDPETKGIILIGEIG--G--- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~~~dv~~~d~l~~l~----~D~~t~~I~ly~E~~--~--- 235 (306)
..|+|+.+.--++++.+.++.....| --...|.-+|+.+ ..-...+.+.-+. .||+.++|++-+=+. +
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 45999999999999999999998888 4588889999874 4445566666666 799999997765321 1
Q ss_pred -C------------------CCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHH
Q psy8894 236 -G------------------PNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGN 294 (306)
Q Consensus 236 -~------------------~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~ 294 (306)
+ ..++|||+=..|....- .-...+.++++.| +...+.-..|.+
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~ee----------------G~~il~e~~~~~gl~i~~~~~~~~m~~ 410 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQK----------------GLAKMRALGEEIGVPIEVYGPEATMTG 410 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHH----------------HHHHHHHhHHhcCCcEEEeCCCCCHHH
Confidence 1 14689988666666431 1233445566999 566662225555
Q ss_pred HHHHHH
Q psy8894 295 ELLKEM 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
+++...
T Consensus 411 a~~~av 416 (423)
T PLN02235 411 ICKQAI 416 (423)
T ss_pred HHHHHH
Confidence 555443
No 303
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.73 E-value=2 Score=43.14 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|. |+.|+.+.+.++.+|.+++.. .+|...-. ...|... .+++++.+. .|++++++....... ++
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~--ADIVI~atGt~~iI~--~e 326 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVET--ADIFVTATGNKDIIT--LE 326 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhc--CCEEEECCCcccccC--HH
Confidence 4689999999 999999999999999996522 46643100 1235543 358888765 999999875433221 23
Q ss_pred HHH-cCCCEEEEecCCC
Q psy8894 107 ALD-AEMPLIVCITEGI 122 (306)
Q Consensus 107 ~~~-~Gi~~vvi~t~Gf 122 (306)
..+ ..-.++++-+..+
T Consensus 327 ~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHhccCCCcEEEEcCCC
Confidence 333 3444455433333
No 304
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.67 E-value=5.1 Score=32.37 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hhHHHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 49 QAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PGAAKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 49 ~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~~~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
.++..||++++. -+. +|.-.-++.+ .+.++|++.++... +.+.+.++.+.+.|.+.+.++..|-..
T Consensus 22 ~l~~~G~~vi~l-G~~--------vp~e~~~~~a-~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 22 ALRDAGFEVIYT-GLR--------QTPEEIVEAA-IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHCCCEEEEC-CCC--------CCHHHHHHHH-HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 455679997631 111 2223223333 33579999998644 344555666666766444444555333
Q ss_pred hHHHHHHHHHHHhcCC-eEEccCCC
Q psy8894 125 LDMVKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 125 ~~~~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.+.. +..+++|+ .+++|+|-
T Consensus 92 ~~~~----~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 92 PEDY----ELLKEMGVAEIFGPGTS 112 (122)
T ss_pred HHHH----HHHHHCCCCEEECCCCC
Confidence 3212 12467888 88888874
No 305
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.62 E-value=3.2 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
..++|.|.|++|-.|+...+.|.+.|++++...
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 456899999999999999999999999977543
No 306
>PRK05086 malate dehydrogenase; Provisional
Probab=87.54 E-value=8.7 Score=36.40 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-c--CCeEEEee--CCCCCCc--eec--C--eec----cCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-Y--GTKVVGGV--SPGKGGK--THL--D--LPV----FNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~--g~~vv~~V--nP~~~g~--~i~--G--ip~----y~sl~el~~~~~iDlavi~v 95 (306)
++|+|+|++|..|+.....+.. . +.+++ .+ ++...+. ++. + ..+ -.++.+... +.|++|++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~-L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS-LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEE-EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 4799999999999988766643 3 33443 43 3433211 111 1 112 124323333 389999985
Q ss_pred Cc--h--------------hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 96 PP--P--------------GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 96 p~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.. . ...++++.+.+.+.+.++++.+..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 43 1 455677778888999998888764
No 307
>KOG4039|consensus
Probab=87.49 E-value=5.1 Score=35.41 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe------eCCCCCCceec-CeeccCCHHhhhhc-CCCcEEEEe-----
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG------VSPGKGGKTHL-DLPVFNTVKEARDA-TGAEATVIY----- 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~------VnP~~~g~~i~-Gip~y~sl~el~~~-~~iDlavi~----- 94 (306)
+.++..|+||+|-.|+...+.+++. -|.-|+. ++|.. ++.+. -..=|..+++.... +++|++.-+
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at-~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT-DKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc-cceeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 3578999999999999999988886 6664444 34433 12211 12234456666543 469998765
Q ss_pred ----------cCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 ----------VPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 ----------vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+-.+.+.+..+.+.+.|++.++..++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS 131 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS 131 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence 23456778888899999999988776
No 308
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=87.35 E-value=1.1 Score=43.14 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH----hhhhcCCCcEEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK----EARDATGAEATVIY 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~----el~~~~~iDlavi~ 94 (306)
+.++|.|+|+ |.||+...++|.+.|+..+...|... . . + -|..+. ++.. ..|++|.+
T Consensus 173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~-~--~-~~~~~~~~~~~~~~--~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--L-T--L-PYRTVVREELSFQD--PYDVIFFG 233 (338)
T ss_pred cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--c-c--c-chhhhhhhhhhccc--CCCEEEEc
Confidence 4689999999 99999999999999988666899886 2 1 1 133221 2222 48999986
No 309
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.27 E-value=5 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
.++|.|.|++|-.|+...+.|.+.|+++++.+.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 468999999999999999999999999775543
No 310
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=87.26 E-value=2.7 Score=38.65 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-------CCHHhhhhcCCCcEEEEecCchhH--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-------NTVKEARDATGAEATVIYVPPPGA-- 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-------~sl~el~~~~~iDlavi~vp~~~~-- 100 (306)
+.+|.|+|- ...|+...+.|.+.|++++.-|-=.+...+..+++++ ..+.++..+++++++|+.++|-+.
T Consensus 2 ~~~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 2 MPRILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred CceEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 467899997 5567888888888899855433222211111122222 234555555567777777766332
Q ss_pred -HHHHHHHHHcCCCEEE
Q psy8894 101 -AKAIHEALDAEMPLIV 116 (306)
Q Consensus 101 -~~~~~e~~~~Gi~~vv 116 (306)
..+.+.|.+.|++.+=
T Consensus 81 s~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 81 SANAAAACRALGIPYLR 97 (248)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 3455555566666543
No 311
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=87.18 E-value=3.1 Score=39.96 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------Cc---e---------ecC--eeccC--CHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------GK---T---------HLD--LPVFN--TVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y~--sl~ 80 (306)
.||+|-|+ |+.|+.+.|.+.+. ++++++.-|+... |. + +.| ++++. +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 48999999 99999999886644 7888854332110 10 1 123 33442 567
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 7663 236999999999999999999999999998775
No 312
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.18 E-value=3.3 Score=38.96 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC-CCc---eecCeec--------cC---CHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK-GGK---THLDLPV--------FN---TVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~-~g~---~i~Gip~--------y~---sl~el~~~~~iDlavi~v 95 (306)
++|+|+|+ |-+|.+..-.|.+.|.++. .|.+.. .-+ +..|+.+ |+ ...+... .+|++++++
T Consensus 3 m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~--~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAE--PIHRLLLAC 78 (305)
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccc--ccCEEEEEC
Confidence 57999999 9999988878888888754 444421 000 0112211 11 1111112 489999999
Q ss_pred CchhHHHHHHHHHHc-CC-CEEEEecCCCChhH
Q psy8894 96 PPPGAAKAIHEALDA-EM-PLIVCITEGIPQLD 126 (306)
Q Consensus 96 p~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~ 126 (306)
-.....++++.+... +- ..++.++-|+..++
T Consensus 79 K~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e 111 (305)
T PRK05708 79 KAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD 111 (305)
T ss_pred CHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence 998888888777552 22 23556888996543
No 313
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.16 E-value=2 Score=40.70 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
-++|+|+|.|+.+|+....+|.+.|+++. ..|.+. +++.++..+ .|++|.+++....
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t-----------~~l~e~~~~--ADIVIsavg~~~~ 215 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS-----------TDAKALCRQ--ADIVVAAVGRPRL 215 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHhc--CCEEEEecCChhc
Confidence 57999999999999999999999999875 566553 168888766 8999999987644
No 314
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.07 E-value=5.1 Score=40.00 Aligned_cols=117 Identities=12% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeec-------------cCCHHhhhh---------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPV-------------FNTVKEARD--------- 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~-------------y~sl~el~~--------- 84 (306)
+.++|+|.|. |+.|....+.|.+.|.++++.-| .. |. .-.|+.. ..++.+.++
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD-~~-G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~ 303 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD-SD-GYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEG 303 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC-CC-CeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCC
Confidence 4689999999 99999999999999999885333 21 10 0012211 112222211
Q ss_pred ----cCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceecC
Q psy8894 85 ----ATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIAP 153 (306)
Q Consensus 85 ----~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~~ 153 (306)
..++|+.+=| +...-..+.++.....|++.|+=.+-|....+..+ +-+++|+.++ | |+-|++..
T Consensus 304 d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~----~L~~rgI~~~-PD~~aNAGGVivs 376 (444)
T PRK14031 304 ARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK----VFQDAKILYA-PGKAANAGGVSVS 376 (444)
T ss_pred cccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH----HHHHCCcEEe-ChhhccCCCeeee
Confidence 0246666654 33445566777777778875442333433333332 3467787665 5 44466654
No 315
>PLN02735 carbamoyl-phosphate synthase
Probab=87.03 E-value=5.3 Score=44.45 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=67.8
Q ss_pred ccccccccccccccccCCCcEEEEEcCCCC--C---------ChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH
Q psy8894 12 KVAEEIYAATRPNLRLTSKSKVICQGFTGK--Q---------GTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK 80 (306)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~VaVvGasg~--~---------G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~ 80 (306)
.+++|-++..-....-+..++|.|+|. |. . |+.+.+.|++.|++++ .||++. ..+. .+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~kkVLiiGs-G~~~igqa~e~d~SG~q~~kaLke~G~~Vi-~vd~np--~t~~-----~~~- 74 (1102)
T PLN02735 5 DTVTRAWSAATKAGKRTDLKKIMILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVV-LINSNP--ATIM-----TDP- 74 (1102)
T ss_pred ccceecccccccCCcccCCCEEEEECC-CccccccceeecchHHHHHHHHHHcCCEEE-EEeCCc--cccc-----CCh-
Confidence 356666665554444455689999998 53 3 4456889999999987 777764 2221 111
Q ss_pred hhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC-CChhHHH-HHH-HHHHHhcCCeEEccCCCceec
Q psy8894 81 EARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG-IPQLDMV-KVK-HRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 81 el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G-f~e~~~~-~~~-~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
++ .|-.. ..|. ....+.+-|.+.++..|+. +-| -...... .+. +.+.+++|+.++||+-..+-.
T Consensus 75 ~~-----aD~~y-i~p~-~~e~v~~ii~~e~~D~Iip-~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~ 141 (1102)
T PLN02735 75 ET-----ADRTY-IAPM-TPELVEQVIAKERPDALLP-TMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKK 141 (1102)
T ss_pred hh-----CcEEE-eCCC-CHHHHHHHHHHhCCCEEEE-CCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHH
Confidence 11 12221 2332 2233334466678887664 433 2212211 111 234578899999987655444
No 316
>KOG0069|consensus
Probab=87.00 E-value=4.7 Score=38.76 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=59.6
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCceecCeec---cCCHHhhhhcCCCcEEEE
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKTHLDLPV---FNTVKEARDATGAEATVI 93 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gip~---y~sl~el~~~~~iDlavi 93 (306)
|.-..+......-++|.++|+ |+.|+..++.|..+|..+.+- =++.. .++ -... +-+++++..+ -|++|+
T Consensus 150 ~~~~~~~g~~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~--~~~-~~~~~~~~~d~~~~~~~--sD~ivv 223 (336)
T KOG0069|consen 150 WAGGWPLGYDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLP--PEE-AYEYYAEFVDIEELLAN--SDVIVV 223 (336)
T ss_pred ccCCccccccccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCc--hhh-HHHhcccccCHHHHHhh--CCEEEE
Confidence 333344444455689999999 999999999999999555432 11221 111 1122 4488888876 999999
Q ss_pred ecCchh-HHHHH--HHHHHcCCCEEEE
Q psy8894 94 YVPPPG-AAKAI--HEALDAEMPLIVC 117 (306)
Q Consensus 94 ~vp~~~-~~~~~--~e~~~~Gi~~vvi 117 (306)
+.|-.. +..++ +.+...+...+++
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlV 250 (336)
T KOG0069|consen 224 NCPLTKETRHLINKKFIEKMKDGAVLV 250 (336)
T ss_pred ecCCCHHHHHHhhHHHHHhcCCCeEEE
Confidence 988643 34443 4444566665554
No 317
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=86.94 E-value=2.5 Score=40.98 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-----CCeEEEeeCCCCC--------------Cc-----e---------------ec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-----GTKVVGGVSPGKG--------------GK-----T---------------HL 71 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-----g~~vv~~VnP~~~--------------g~-----~---------------i~ 71 (306)
.+|+|-|+ |+.|+.+.|.+.+. ++++++.-||... |. + +.
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999 99999999987653 5788866554210 11 0 12
Q ss_pred Ce--ecc---CCHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 72 DL--PVF---NTVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 72 Gi--p~y---~sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
|. +++ .+.+++|= +.++|+++-|+..-...+-+..=++.|.|.|++
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 32 343 35677762 246999998888777777777777889998875
No 318
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=86.94 E-value=4 Score=39.92 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH-----------hhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK-----------EARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~-----------el~~~~~iDlavi~vp~ 97 (306)
+..+|.|+|+ |-.|....++|...|+.-+..||+......-.+-..+-+.+ +...+..+++-|...+.
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 4678999999 88999999999999998666888765221111111221111 11112235555544443
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
....+.+.+.+ .+...|+..+..+ ....++.++|+++++.++--.+.|+
T Consensus 120 ~i~~~~~~~~~-~~~D~Vvd~~d~~---~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 120 RLDPSNAVELF-SQYDLILDGTDNF---ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred cCChhHHHHHH-hcCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 33333344443 3566555433232 2233344678888877765555443
No 319
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=86.78 E-value=0.73 Score=47.64 Aligned_cols=178 Identities=15% Similarity=-0.010 Sum_probs=106.1
Q ss_pred eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH--HcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEcc
Q psy8894 69 THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL--DAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGP 145 (306)
Q Consensus 69 ~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~--~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGP 145 (306)
+..|-+.+...+.+++. -+-+ ..+++....-++..+ ...++.-+-+++.+..+.-++-.+..++..++ .++.=
T Consensus 306 tn~Gg~gvla~D~l~~~--g~~l--~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi 381 (598)
T COG1042 306 TNGGGPGVLAADALEER--GLKL--AELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVI 381 (598)
T ss_pred ecCCCccccchhHHHHc--CCCc--CCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEE
Confidence 34567777777777653 2222 223333333333222 35677777788888765433333333443332 33322
Q ss_pred CCCceecCc-c--ccccCCCCCCCCCCCEEEEecChhhHHHHH-HHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 146 NCPGIIAPE-Q--CKIGIMPGHIHQRGCVGVVSRSGTLTYEAV-HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 146 Nc~Gi~~~~-~--~~~~~~~~~~~~~G~va~vSqSG~~~~~~~-~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
.|.+..... . ..+... .....|+..+++|.|....... ..+++.|++++.....++. +...+.++..|+..+
T Consensus 382 ~~~~~~~~~~~~a~~~~~~--~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~--a~~~l~~~~~~~~~~ 457 (598)
T COG1042 382 VLPPASADPEETAEAIIRA--TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVK--ALSALARYRRWLKKL 457 (598)
T ss_pred ecCCCCCCchhhhHHHHHh--hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHH--HHHHHHHHHHHHHhh
Confidence 222222111 1 001111 2346789999999999433332 4577899999999999999 888999999999999
Q ss_pred CCccEEEEEEeeCCCCCCCcEEEEEecCCCCCCCC--ccCCcccc
Q psy8894 222 PETKGIILIGEIGGGPNAKPVVSFIAGITAPPGRR--MGHAGAII 264 (306)
Q Consensus 222 ~~t~~I~ly~E~~~~~~~KPVvvlk~Grs~~~g~~--~sHtga~a 264 (306)
..| .|+|+. ++..+.+.++.+. ..+ .+|+..++
T Consensus 458 ~~~----~~~~~~-----~~~~~~~~e~~~~-l~~~gi~~~~~~~ 492 (598)
T COG1042 458 RET----PVFEGG-----GGTTLDEPEAKEL-LEAYGIPVPATIA 492 (598)
T ss_pred ccC----cccccC-----CccccCchhhhhH-HHHhcCccccccc
Confidence 998 225554 7778888877753 322 67777744
No 320
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=86.75 E-value=4.5 Score=38.08 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC--CCCce---e-----cCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG--KGGKT---H-----LDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~--~~g~~---i-----~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.++.+.|. |..|....+.+.+. ++++++.++.+ ..|++ + .|+..-.++++.... .+|.++...-.+.
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~~ 80 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLPS 80 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccch
Confidence 46788888 99998888877776 99999886533 23432 2 345555555554432 3444444322223
Q ss_pred HHHHHHHHHHcCCCEEEEecC-------CCChhHH-HHHHHHHHHhcCC-eEEcc
Q psy8894 100 AAKAIHEALDAEMPLIVCITE-------GIPQLDM-VKVKHRLIRQSKS-RLIGP 145 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi~t~-------Gf~e~~~-~~~~~~~ar~~gi-~iiGP 145 (306)
.+-.++|+++|++. + ++ +|...+. ++.. ++|.++|. .+.|-
T Consensus 81 -~~~y~rlL~aGiNV-v--~~g~~l~yPw~~~PelaeKpl-~lAaraGn~Tl~gt 130 (350)
T COG3804 81 -VDEYARLLRAGINV-V--TPGPVLQYPWFYPPELAEKPL-ELAARAGNATLHGT 130 (350)
T ss_pred -HHHHHHHHHcCCce-e--ccCccccCCCcCChHHhhchH-HHHHhcCCceEEec
Confidence 77889999999994 3 34 3333333 3444 46777775 66553
No 321
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.73 E-value=1.9 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.++|.|||. |+.|..-.+.|++.|.++. .|+|+.
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL 42 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence 468999999 7777666778899998865 788874
No 322
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=86.59 E-value=1.2 Score=40.85 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCCce---e-------cC-eeccC-----CH------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGGKT---H-------LD-LPVFN-----TV------ 79 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g~~---i-------~G-ip~y~-----sl------ 79 (306)
+.++++|.|. |+.|....+.|.+.|.++++. .||+. -. + .. +.-|+ ..
T Consensus 31 ~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G--ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 31 EGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG--LDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp TTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE--EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC--chHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 4689999999 999999999999999998754 35542 11 0 11 23333 01
Q ss_pred HhhhhcCCCcEEEEec-CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceec
Q psy8894 80 KEARDATGAEATVIYV-PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIA 152 (306)
Q Consensus 80 ~el~~~~~iDlavi~v-p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~ 152 (306)
+++.+ .++|+.+-|. +..-..+.++..++.|+|.|+-.+-+....+..+ +.+++|+.++ | |+-|++.
T Consensus 108 ~~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~rGI~vi-PD~~aNaGGvi~ 179 (244)
T PF00208_consen 108 DEILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRERGILVI-PDFLANAGGVIV 179 (244)
T ss_dssp CHGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHTT-EEE--HHHHTTHHHHH
T ss_pred ccccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHCCCEEE-cchhhcCCCeEe
Confidence 13333 2599999885 4455566777677889998775444443333332 4578887766 5 4445554
No 323
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.48 E-value=3.3 Score=40.28 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|..+.++|...|+.-+..+|+......-.+-.++-+-+++ ..+..+++-|...+.
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 3578999999 8899999999999998755678776421111111111111111 111224544444444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
....+.+++.+ .+...|+..+..+ +...++.++|+++++.++--.+
T Consensus 119 ~i~~~~~~~~~-~~~DlVid~~Dn~---~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELL-NGVDLVLDGSDSF---ATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHH-hCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEE
Confidence 44444444444 3566655433333 1223344577787875554443
No 324
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=86.46 E-value=2.2 Score=41.03 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=109.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------Cc---e---------ecC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------GK---T---------HLD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y~--s 78 (306)
.||+|-|+ |+.|+...+.+.+. ++++++.-|+... |. + +.| ++++. +
T Consensus 2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 47999999 99999998876543 5778754332210 10 0 223 34443 3
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChh-HH------HHHHHHHHHhcCCeEEccCCCce
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL-DM------VKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~-~~------~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
.+++|= +.++|+++.|+......+.+...++.|.+.|++ |. ++.+ +. ..- +++.....--+-.|+|...
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i-Sa-p~~d~d~p~vV~gVN~-~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI-TA-PGKGEDIGTYVVGVNH-HEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe-CC-CCCCCCCceEecccCH-HHhccCCCCEEECCcHHHH
Confidence 466652 236999999999999999999999999998775 43 3222 20 000 1122111124557777522
Q ss_pred ecC-c----c-------ccccC-------C-----CC---CCCCCCCEEEEecChhhHHHHHHHHHhCC---CceEEEEe
Q psy8894 151 IAP-E----Q-------CKIGI-------M-----PG---HIHQRGCVGVVSRSGTLTYEAVHQTTQVG---LGQTLCVG 200 (306)
Q Consensus 151 ~~~-~----~-------~~~~~-------~-----~~---~~~~~G~va~vSqSG~~~~~~~~~~~~~g---~g~s~~vs 200 (306)
.-. . . ..+++ . +. ...++....+|.+|.+.+.++..-+-+.. -|.+.-|.
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVP 237 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEec
Confidence 111 0 0 00000 0 10 12344567789999887777653222111 12222222
Q ss_pred cCCCC--------CCCCCHHHHHHHhhcCCC--ccEEEEEEee
Q psy8894 201 IGGDP--------FNGTNFIDCLEVFLKDPE--TKGIILIGEI 233 (306)
Q Consensus 201 ~Gn~~--------~~dv~~~d~l~~l~~D~~--t~~I~ly~E~ 233 (306)
+=|-. -..++..|+.+.|.+-.+ -+.|+-|-|.
T Consensus 238 t~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~ 280 (337)
T PRK07403 238 TPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDL 280 (337)
T ss_pred cCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecC
Confidence 22210 035788888888877543 5778888764
No 325
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=86.45 E-value=6.5 Score=35.09 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=66.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHH---HHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc---
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSK---QAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP--- 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~---~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~--- 97 (306)
..++....+|.|.|+ ||-|-.+-+ .|...|++.+ .|+|... .....|... . =|+++.....
T Consensus 33 ~~i~~~~gkv~V~G~-GkSG~Igkk~Aa~L~s~G~~a~-fv~p~ea--~hgdlg~i~------~---~DvviaiS~SGeT 99 (202)
T COG0794 33 ELILECKGKVFVTGV-GKSGLIGKKFAARLASTGTPAF-FVGPAEA--LHGDLGMIT------P---GDVVIAISGSGET 99 (202)
T ss_pred HHHHhcCCcEEEEcC-ChhHHHHHHHHHHHHccCCceE-EecCchh--ccCCccCCC------C---CCEEEEEeCCCcH
Confidence 345555789999999 888766543 5556699864 8999741 112223322 2 5888877655
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
+....+++.+.+.|++.|-+ |.. ++.. ++|..++.+.=|..
T Consensus 100 ~el~~~~~~aK~~g~~liai-T~~-~~Ss-------Lak~aDvvl~ip~~ 140 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAI-TSN-PDSS-------LAKAADVVLVIPVK 140 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEE-eCC-CCCh-------HHHhcCeEEEccCc
Confidence 44556778888899997664 543 3332 67778887776754
No 326
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.40 E-value=5.4 Score=42.86 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHH-------HH-cCCe--EEEeeCCCCCCceecCee------------ccCCHHhhh---
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQA-------IE-YGTK--VVGGVSPGKGGKTHLDLP------------VFNTVKEAR--- 83 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l-------~~-~g~~--vv~~VnP~~~g~~i~Gip------------~y~sl~el~--- 83 (306)
+..+|+++|. |+.|+..++.+ .+ +|.+ +++..|.+..--.-.|+. ...+++.+.
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i 535 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWL 535 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHH
Confidence 4678999999 99999876543 22 3544 666555432100111111 111222221
Q ss_pred hcCC--CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC-----ChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 84 DATG--AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI-----PQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 84 ~~~~--iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf-----~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+ .+++|.+++.+.......+++++|++.| |+.- +-+...++ .++|+++|.++.=--+.|
T Consensus 536 ~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV---taNK~~~a~~~~~~~~l-~~~a~~~~~~~~yEasV~ 604 (810)
T PRK09466 536 RAHPYDELVVLDVTASEQLALQYPDFASHGFHVI---SANKLAGSSPSNFYRQI-KDAFAKTGRHWLYNATVG 604 (810)
T ss_pred hhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE---cCCcccccccHHHHHHH-HHHHHHcCCeEEEeceee
Confidence 1111 3599999999888888889999999943 4322 11222334 357899997766444443
No 327
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.33 E-value=2.9 Score=37.34 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+..+|+|+|+ |-+|....++|...|..-+..+|+..
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3578999999 99999999999999988555777763
No 328
>PRK14030 glutamate dehydrogenase; Provisional
Probab=86.22 E-value=5.7 Score=39.72 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCC-cee---c------C-ee-----ccC-----CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGG-KTH---L------D-LP-----VFN-----TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g-~~i---~------G-ip-----~y~-----sl~ 80 (306)
+.++|+|.|. |+.|....+.|.+.|.++++. .||+.-- +++ . | +. -|+ +-+
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~ 305 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGK 305 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCc
Confidence 4689999998 999999999999999998864 4554210 000 0 0 00 111 112
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceecC
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIAP 153 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~~ 153 (306)
++.. .++|+.+-| +...-..+.++...+.+++.|+=.+-|....+..+ +-+++|+.++ |. +-|++..
T Consensus 306 ~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~----iL~~rGI~~v-PD~~aNAGGVivs 377 (445)
T PRK14030 306 KPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAID----KFIAAKQLFA-PGKAVNAGGVATS 377 (445)
T ss_pred ccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHH----HHHHCCCEEe-CcceecCCCeeee
Confidence 2222 257877765 44555667778888889997665555644334333 4478887766 64 3466653
No 329
>KOG2018|consensus
Probab=85.98 E-value=2.9 Score=39.95 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e----------cCee-----------------------c
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H----------LDLP-----------------------V 75 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i----------~Gip-----------------------~ 75 (306)
..=|+|||+ |..|+.+...|.+.|++-+-.||+....-. + -|.| .
T Consensus 74 ~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 74 NSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred CcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 345899999 999999999999999987778888653210 0 0211 1
Q ss_pred cC--CHHhhhhcCCCcEEEEecCc-hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 76 FN--TVKEARDATGAEATVIYVPP-PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 76 y~--sl~el~~~~~iDlavi~vp~-~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
|. +=+|+... +||.+++|.-. +.-.++++.|..+|++.+ -++|.
T Consensus 153 ~~~~s~edll~g-nPdFvvDciDNidtKVdLL~y~~~~~l~Vi--ss~Ga 199 (430)
T KOG2018|consen 153 WTSSSEEDLLSG-NPDFVVDCIDNIDTKVDLLEYCYNHGLKVI--SSTGA 199 (430)
T ss_pred cCCCchhhhhcC-CCCeEeEhhhhhhhhhHHHHHHHHcCCceE--eccCc
Confidence 21 12333322 49999999755 666899999999999953 46665
No 330
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.95 E-value=7.3 Score=36.99 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCC---Ccee--------c----CeeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKG---GKTH--------L----DLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~---g~~i--------~----Gip~y~sl~el~~~~~iDlav 92 (306)
+..+|+|+|+ |.+|......+...| .+ +..+|.+.. |... . .+..+.+.+++. +.|++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~---~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIK---DSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhC---CCCEEE
Confidence 4579999999 999988766666667 45 446665431 1111 1 122335566553 389999
Q ss_pred Eec--Cc--------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 93 IYV--PP--------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 93 i~v--p~--------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++. |. +...++++++.+.+-+.++++.+.
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 987 32 335577777778887885555544
No 331
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=85.94 E-value=1.9 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.120 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChHHHHHHHHcC--CeEEEe
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYG--TKVVGG 60 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g--~~vv~~ 60 (306)
|+|.|++|..|+...+.++++. |++++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L 30 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL 30 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence 6899999999999888888874 777654
No 332
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.90 E-value=4.6 Score=36.89 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
+|.|.|++|-.|+...+.|.+.|+++++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 49999999999999999999999998743
No 333
>KOG2733|consensus
Probab=85.70 E-value=1.5 Score=42.44 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH----cCCe-EEEeeCCCCCCc--eecCeec-----------c-----CCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE----YGTK-VVGGVSPGKGGK--THLDLPV-----------F-----NTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~----~g~~-vv~~VnP~~~g~--~i~Gip~-----------y-----~sl~el~~~~ 86 (306)
+-.++|.||||=.|+++.+.+.+ .+.. -+++=|++.-.+ +..+.+. - .||.++...
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~- 83 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ- 83 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh-
Confidence 34589999999999998877666 2554 233334332100 0001111 1 236677665
Q ss_pred CCcEEEEecCchhH--HHHHHHHHHcCCCEEEEecCCCChh--HHHHHHHHHHHhcCCeEEc
Q psy8894 87 GAEATVIYVPPPGA--AKAIHEALDAEMPLIVCITEGIPQL--DMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 87 ~iDlavi~vp~~~~--~~~~~e~~~~Gi~~vvi~t~Gf~e~--~~~~~~~~~ar~~gi~iiG 144 (306)
..+++=|+.|-.. +.+++.|++.|.+.+=| +|=++- .++..-.+.|++.|+-|++
T Consensus 84 -~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A~ekGVYIVs 142 (423)
T KOG2733|consen 84 -ARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLAKEKGVYIVS 142 (423)
T ss_pred -hEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHHHhcCeEEEe
Confidence 7888888888554 67999999999999876 553321 1222233578999976664
No 334
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.70 E-value=9.1 Score=35.85 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH---------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA--------- 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~--------- 100 (306)
++++|+|- ..-.-+..+.|.+.|+++. ++.+-.. ....|+..+++.++..+. .|++|+-+|-..-
T Consensus 2 ~~~~v~gg-d~r~~~~~~~l~~~g~~v~~~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~~~~i~~~~~ 76 (287)
T TIGR02853 2 IHIAVIGG-DARQLELIRKLEELDAKISLIGFDQLE--DGFTGAVKCELLELDLTT--LDVVILPVPGTSHDGKVATVFS 76 (287)
T ss_pred cEEEEEcc-cHHHHHHHHHHHHCCCEEEEEeccccc--cccccceeecchhhhhcc--CCEEEECCccccCCceEecccc
Confidence 57999994 2223345788999999943 3343121 224477788877775555 8999998772211
Q ss_pred -------HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE---ccCCCceecCccc---ccc--CCCCCC
Q psy8894 101 -------AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI---GPNCPGIIAPEQC---KIG--IMPGHI 165 (306)
Q Consensus 101 -------~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii---GPNc~Gi~~~~~~---~~~--~~~~~~ 165 (306)
.++++.+- ... + +.+|+...+.+ +.|+++|++++ .-+..-+.|.... .+. ......
T Consensus 77 ~~~~~l~~~~l~~~~---~~~-~-~~~G~~~~~l~----~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~ 147 (287)
T TIGR02853 77 NEKVVLTPELLESTK---GHC-T-IYVGISNPYLE----QLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDF 147 (287)
T ss_pred cCCccccHHHHHhcC---CCC-E-EEEecCCHHHH----HHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCC
Confidence 22233222 222 2 34677655543 26899998877 2122222332211 000 000001
Q ss_pred CCCCCEEEEecChhhHHHHHHHHHhCCC
Q psy8894 166 HQRGCVGVVSRSGTLTYEAVHQTTQVGL 193 (306)
Q Consensus 166 ~~~G~va~vSqSG~~~~~~~~~~~~~g~ 193 (306)
...|.-..|--.|.++..+...+...|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~ 175 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA 175 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 2345544555569999999988877654
No 335
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.38 E-value=3.1 Score=40.43 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc---------C--CHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF---------N--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y---------~--sl~el~~~~~iDlavi~vp~ 97 (306)
+.++|+|+|+ |-.|+.+.++|...|..-+..||+......-.+-..+ + .+.+-..+..+++-+...+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4678999999 8899999999999999755688876421111111111 1 11111111235554444443
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
....+.+++.+ .+...|+..+..+ + ....+.++|+++++.++--...|
T Consensus 213 ~~~~~~~~~~~-~~~D~Vv~~~d~~-~--~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 213 RVTSDNVEALL-QDVDVVVDGADNF-P--TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred cCChHHHHHHH-hCCCEEEECCCCH-H--HHHHHHHHHHHcCCCEEEEEecc
Confidence 33334444444 3567666433333 1 22334467888888777655544
No 336
>PRK14851 hypothetical protein; Provisional
Probab=85.35 E-value=6.4 Score=41.46 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeec-cC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPV-FN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~-y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|...|..-+..||+.........-.+ |. -+.+-..+.+|++-|.+.+..
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 588999999 888999999999988875556766542111111111 11 011111122356655555555
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
...+.+++.++ ++..|+..+..|+ .+....+.+.|+++++.++--.
T Consensus 122 i~~~n~~~~l~-~~DvVid~~D~~~-~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 122 INADNMDAFLD-GVDVVLDGLDFFQ-FEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CChHHHHHHHh-CCCEEEECCCCCc-HHHHHHHHHHHHHCCCCEEEee
Confidence 55556666654 5776554333332 2222333456888888777433
No 337
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=85.22 E-value=5.5 Score=39.03 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--ce---------ec--C--eeccCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--KT---------HL--D--LPVFNT 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~~---------i~--G--ip~y~s 78 (306)
++|+|.|++|..|+..++.++++ .|++++.. +|+... ++ .. | .+++.-
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 68999999999999888777765 58876542 222100 00 00 1 233332
Q ss_pred ---HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 79 ---VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 79 ---l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
+.++.+..++|+++..+..-.-..-.-+++++|.+..+ +.. |.- .-.+..+++++++.+++
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaL--ANK--EsLV~aG~li~~~a~~~~~~I~ 147 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIAL--ANK--ESLVTAGHLFLDAVKKYGVQLL 147 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEE--ech--hHHHhhHHHHHHHHHHcCCeEE
Confidence 33333333478888877777777777777888866433 322 110 11333346677765544
No 338
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.21 E-value=7 Score=36.39 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|....++|...|..-+..||+......-.+-..+.. +.+-..+..|++-|...+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 4578999999 889999999999999775557877642211112222211 1122222347776666655
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
....+.+++....+...|+. +.+-... ...+.+.|+++++.++
T Consensus 108 ~i~~e~~~~ll~~~~D~VId-aiD~~~~--k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVID-AIDSVRP--KAALIAYCRRNKIPLV 150 (268)
T ss_pred ccChhhHHHHhcCCCCEEEE-cCCCHHH--HHHHHHHHHHcCCCEE
Confidence 44556667777667786653 5442121 2223357899998777
No 339
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.18 E-value=3.3 Score=41.18 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|+ |+.|+...+.++.+|.+++.. ++|...-. ...|..+. +++++.+. .|++|.++....+.+ .+
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~~--aDVVI~aTG~~~vI~--~~ 284 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAEL--GDIFVTATGNKDVIT--AE 284 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHhC--CCEEEECCCCHHHHH--HH
Confidence 5679999999 999999999999999986522 55543101 12365543 57777664 999999886544332 12
Q ss_pred HHH-cCCCEEEEecCCCC-hhHHHHHHHHHHHhcCCeEEccCCCceecCc
Q psy8894 107 ALD-AEMPLIVCITEGIP-QLDMVKVKHRLIRQSKSRLIGPNCPGIIAPE 154 (306)
Q Consensus 107 ~~~-~Gi~~vvi~t~Gf~-e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~ 154 (306)
..+ ..-..+++....|. |-+...+. +.+ ...+-++|+.-.+..|.
T Consensus 285 ~~~~mK~GailiNvG~~d~Eid~~~L~-~~~--~~~~~v~~~v~~y~~~~ 331 (425)
T PRK05476 285 HMEAMKDGAILANIGHFDNEIDVAALE-ELA--VKWREIKPQVDEYTLPD 331 (425)
T ss_pred HHhcCCCCCEEEEcCCCCCccChHHHh-hcC--cceeecCCCceEEEeCC
Confidence 222 22333444344443 22333322 222 12344577765555553
No 340
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.13 E-value=3.1 Score=41.35 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=49.2
Q ss_pred cCCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCC--ce--ecCeeccC--CHHhhhhcCCCcEEEEe--cCc
Q psy8894 27 LTSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGG--KT--HLDLPVFN--TVKEARDATGAEATVIY--VPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g--~~--i~Gip~y~--sl~el~~~~~iDlavi~--vp~ 97 (306)
+.+.++|.|+|. |..|.. ..+.|.+.|+++. +.|.+... .+ -.|++++. +.+.+ + ++|++|+. +|+
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~--~~d~vv~spgi~~ 78 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAENI-K--DADVVVYSSAIPD 78 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHHC-C--CCCEEEECCCCCC
Confidence 455678999999 999988 5889999999976 66654310 11 12666542 22223 2 38988764 343
Q ss_pred hhHHHHHHHHHHcCCC
Q psy8894 98 PGAAKAIHEALDAEMP 113 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~ 113 (306)
. -+.++++.++|++
T Consensus 79 ~--~~~~~~a~~~~i~ 92 (461)
T PRK00421 79 D--NPELVAARELGIP 92 (461)
T ss_pred C--CHHHHHHHHCCCc
Confidence 2 2345555555555
No 341
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=84.96 E-value=2.1 Score=39.80 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEE---EecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATV---IYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlav---i~vp~~~~~~~~ 104 (306)
.+.+++.|.|||+..|+...+.|.+.|++++ .|..+. +.. ...+. ++..++++++-+ +.+-++.+..+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~--~kL--~~la~---~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLI-LVARRE--DKL--EALAK---ELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcH--HHH--HHHHH---HHHHhhCceEEEEECcCCChhHHHHHH
Confidence 3467899999999999999999999999987 777764 221 12233 222222233322 356667788888
Q ss_pred HHHHHc--CCCEEEEecCCCC
Q psy8894 105 HEALDA--EMPLIVCITEGIP 123 (306)
Q Consensus 105 ~e~~~~--Gi~~vvi~t~Gf~ 123 (306)
++..+. .|..+++ ..||.
T Consensus 76 ~~l~~~~~~IdvLVN-NAG~g 95 (265)
T COG0300 76 DELKERGGPIDVLVN-NAGFG 95 (265)
T ss_pred HHHHhcCCcccEEEE-CCCcC
Confidence 888887 5886665 77775
No 342
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=84.92 E-value=5.6 Score=38.60 Aligned_cols=91 Identities=18% Similarity=0.058 Sum_probs=59.3
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC----------ceec----------------C-eeccC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG----------KTHL----------------D-LPVFN 77 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g----------~~i~----------------G-ip~y~ 77 (306)
--.+|.||.+||+ |.||+-........ |+++++.-|.+..+ +++. | +-+-.
T Consensus 13 a~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~ 91 (438)
T COG4091 13 AEGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTD 91 (438)
T ss_pred ccCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEec
Confidence 3467999999999 99999887666665 99988764433211 1110 1 11222
Q ss_pred CHHhhhhcCCCcEEEEecC-chhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARDATGAEATVIYVP-PPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp-~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.+.+.....+|++|..|- |+.-..+.-+++++|.+.|.+
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMm 132 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMM 132 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEE
Confidence 3444443335999998765 455677888999999886653
No 343
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.87 E-value=1 Score=44.49 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.++|+|+|+ |.+|+...+.+...|++.+..+|+..
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 34589999999 99999999999988986445777763
No 344
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=84.77 E-value=2.7 Score=39.39 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=54.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe-----------------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----------------- 94 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----------------- 94 (306)
+|.|.|++|-.|+...+.+. .+++++ +.+.+. .++.-..++.++..+..||++|=+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~ 74 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF 74 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence 49999999998988887777 567776 454432 233445556677665568888754
Q ss_pred -cCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 -VPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 -vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++...+..+++.|.+.|.+.|-+ |+
T Consensus 75 ~vNa~~~~~lA~aa~~~ga~lVhi-ST 100 (281)
T COG1091 75 AVNATGAENLARAAAEVGARLVHI-ST 100 (281)
T ss_pred HhHHHHHHHHHHHHHHhCCeEEEe-ec
Confidence 33344556778888888887664 53
No 345
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=84.68 E-value=4.3 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
++|.|+|+++..|+...+.|.+.|++++ .++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~-~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI-ATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 3689999999999999999999999976 4443
No 346
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=84.56 E-value=2.6 Score=40.26 Aligned_cols=90 Identities=8% Similarity=-0.137 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeC-C-CCCCcee--cCeecc-CCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVS-P-GKGGKTH--LDLPVF-NTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~Vn-P-~~~g~~i--~Gip~y-~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..+||| ||+|..|+...+.|.+.+|. -+.++. + ...|+++ .|..+. ..+++-.- .++|+++. .+.+...+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~~ 79 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQAE 79 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHHH
Confidence 357999 99999999999999988875 122333 2 3334433 232211 12322211 25999998 99999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.++|...|=+ |+-|.
T Consensus 80 ~ap~a~~aG~~VIDn-Ssa~R 99 (322)
T PRK06901 80 HLAQAAEAGCIVIDL-YGICA 99 (322)
T ss_pred HHHHHHHCCCEEEEC-ChHhh
Confidence 999999999886553 66554
No 347
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=84.52 E-value=2.8 Score=41.63 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-e--CCCCCCceecCeecc---CC---HHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-V--SPGKGGKTHLDLPVF---NT---VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-V--nP~~~g~~i~Gip~y---~s---l~el~~~~~iDlavi~vp~~~~ 100 (306)
.++|.|+|. |.-.......+++.|+++++. . ||.. ..+...-++ .+ +.++.++++||++|...-...+
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 368999998 544445566788888875443 4 4432 111111111 23 3334444568888776444455
Q ss_pred HHHHHHHHHcCCC
Q psy8894 101 AKAIHEALDAEMP 113 (306)
Q Consensus 101 ~~~~~e~~~~Gi~ 113 (306)
...++++.+.|++
T Consensus 79 ~~~~~~l~~~Gi~ 91 (435)
T PRK06395 79 TPLVNNLLKRGIK 91 (435)
T ss_pred HHHHHHHHHCCCc
Confidence 5667777777777
No 348
>PLN02427 UDP-apiose/xylose synthase
Probab=84.46 E-value=5.2 Score=38.42 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG 60 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~ 60 (306)
.++++|.|.|++|-.|+...+.|.+. |+++++.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 35788999999999999999999987 5887644
No 349
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=84.44 E-value=0.85 Score=40.98 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCCCCCCC---------ccCCcccc
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITAPPGRR---------MGHAGAII 264 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~~~g~~---------~sHtga~a 264 (306)
++.+.|+.+.+||++++|+|.+++.+ +..+||||++--+-+. .+.- +..++.+.
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~s-ggy~lasaad~I~a~p~~~vg 111 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQ-GQYYLASAADEIYLNPSGSVE 111 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCc-hhhhhhhhCCEEEECCCceEE
Confidence 34556667788999999999999876 2368999999776332 1211 23333332
Q ss_pred cCCC-CCHHHHHHHHHHcCCeE
Q psy8894 265 SGGK-GGAQDKIDALEKAGVIV 285 (306)
Q Consensus 265 ~~~~-g~~~~~~a~~~~aGvi~ 285 (306)
.-+. ....-+..+|++.|+-.
T Consensus 112 ~iGv~~~~~~~~~ll~klGv~~ 133 (222)
T cd07018 112 LTGLSAETLFFKGLLDKLGVEV 133 (222)
T ss_pred eeccchhhhhHHHHHHHcCCcE
Confidence 1100 13345678899999865
No 350
>PRK04148 hypothetical protein; Provisional
Probab=84.42 E-value=2.3 Score=35.54 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhc-----CCCcEEEEecCchhH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDA-----TGAEATVIYVPPPGA- 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~-----~~iDlavi~vp~~~~- 100 (306)
+.++|++||+ | .|......|.+.|+++++. +||..... ...++.+. .+|+-+. .+.|++--+-||...
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v--~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAF--VDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEE--ECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 3578999999 8 7877778888899998855 55553100 01122222 1222221 248888877666554
Q ss_pred HHHHHHHHHcCCCEEE
Q psy8894 101 AKAIHEALDAEMPLIV 116 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vv 116 (306)
..+++-+-+.|+..++
T Consensus 92 ~~~~~la~~~~~~~~i 107 (134)
T PRK04148 92 PFILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5555666667888654
No 351
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=84.40 E-value=2.5 Score=46.80 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCC-C---------ChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGK-Q---------GTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~-~---------G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..++|.|+|..+. . |+.+.+.|++.|++++ .+|++.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-~v~~np 51 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-LVNPNP 51 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-EEeCCc
Confidence 4689999998433 3 3445788999999987 677664
No 352
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=84.38 E-value=6.1 Score=42.55 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-------cCCe--EEEeeCCCCCCceecCeec--c----------CCHHh---hhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-------YGTK--VVGGVSPGKGGKTHLDLPV--F----------NTVKE---ARD 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-------~g~~--vv~~VnP~~~g~~i~Gip~--y----------~sl~e---l~~ 84 (306)
++.+|+++|. |+.|+..++.+.+ .|++ +++..|.+..--.-.|+.. + .++++ +..
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 6889999999 9999887654432 2444 6655553320000112110 0 11222 222
Q ss_pred cC--CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC---Ch--hHHHHHHHHHHHhcCCeEE
Q psy8894 85 AT--GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI---PQ--LDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 85 ~~--~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf---~e--~~~~~~~~~~ar~~gi~ii 143 (306)
.. +.|++|.|++.........+++++|++.| |+.- +. +...++ .++|+++|.++.
T Consensus 543 ~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV---taNK~~~a~~~~~~~el-~~~a~~~~~~~~ 604 (819)
T PRK09436 543 EYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV---TPNKKANTSSYAYYHQL-REAARKSRRKFL 604 (819)
T ss_pred hcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE---cCCchhccCCHHHHHHH-HHHHHHcCCeEE
Confidence 11 25899999999888888899999999943 3321 11 122333 457899987665
No 353
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.37 E-value=3.3 Score=41.16 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--------eecCeeccCC---HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--------THLDLPVFNT---VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--------~i~Gip~y~s---l~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|+|. |+.|....+.|++.|+++. +.|.+.... +-.|+.++.. .+.+ . ++|++|....-.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~--~~dlVV~Spgi~ 88 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-D--GFDVIFKTPSMR 88 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-c--cCCEEEECCCCC
Confidence 468999999 9999988899999999865 556432101 1136665431 2333 3 389887752112
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
..-+.+..|.+.|++
T Consensus 89 ~~~p~~~~a~~~~i~ 103 (458)
T PRK01710 89 IDSPELVKAKEEGAY 103 (458)
T ss_pred CCchHHHHHHHcCCc
Confidence 334567777677766
No 354
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=84.25 E-value=4.3 Score=37.71 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=48.1
Q ss_pred EEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCce------e-------cCeeccCCHHhhhhcCCCcEEEEe---c
Q psy8894 34 ICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGKT------H-------LDLPVFNTVKEARDATGAEATVIY---V 95 (306)
Q Consensus 34 aVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~~------i-------~Gip~y~sl~el~~~~~iDlavi~---v 95 (306)
.|.|++|-.|+.+.+.|++.| +++. .++....... . .++.-+.++.++.+. +|+++-+ +
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr-~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g--~d~V~H~Aa~~ 77 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVR-VLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEG--VDVVFHTAAPV 77 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEE-EcccccccccchhhhcccceeEEEeccccHHHHHHHhcC--CceEEEeCccc
Confidence 389999999999999999998 5543 3332211011 1 112222345555543 7877754 1
Q ss_pred Cc--------------hhHHHHHHHHHHcCCCEEEE
Q psy8894 96 PP--------------PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 96 p~--------------~~~~~~~~e~~~~Gi~~vvi 117 (306)
+. ..+..+++.|.+.||+.+|.
T Consensus 78 ~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 78 PPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 11 22445778888888887764
No 355
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.18 E-value=7.2 Score=36.26 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSP 63 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP 63 (306)
++.++|.|.|++|-.|+...+.|.+.|++++.. .++
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 345789999999999999999999999997543 344
No 356
>PRK08177 short chain dehydrogenase; Provisional
Probab=84.05 E-value=3.7 Score=36.03 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~~~ 109 (306)
+++.|.|+++..|+...+.|.+.|++++ .++.+. .... .+.++.. +. ...+..-++...++++++.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~------~~~~~~~---~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVT-ATVRGP--QQDT------ALQALPG---VHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEE-EEeCCC--cchH------HHHhccc---cceEEcCCCCHHHHHHHHHHhhc
Confidence 5799999999999999999999999976 444332 1110 0111111 11 11233445556666666655
Q ss_pred cCCCEEEEecCCC
Q psy8894 110 AEMPLIVCITEGI 122 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf 122 (306)
.++..++. ..|.
T Consensus 70 ~~id~vi~-~ag~ 81 (225)
T PRK08177 70 QRFDLLFV-NAGI 81 (225)
T ss_pred CCCCEEEE-cCcc
Confidence 56887664 4444
No 357
>PLN00203 glutamyl-tRNA reductase
Probab=84.01 E-value=0.71 Score=46.97 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e----ecCee----ccCCHHhhhhcCCCcEEEEecCchh-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T----HLDLP----VFNTVKEARDATGAEATVIYVPPPG- 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~----i~Gip----~y~sl~el~~~~~iDlavi~vp~~~- 99 (306)
.++|+|+|+ |.+|+...+.|...|++-+..+|++.... . ..|.. .+.++.+...+ .|+++.+|+...
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCC
Confidence 578999999 99999999999999986555788764111 1 11221 12234344433 788877764322
Q ss_pred --HHHHHHHHH
Q psy8894 100 --AAKAIHEAL 108 (306)
Q Consensus 100 --~~~~~~e~~ 108 (306)
..+.++.+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 344555543
No 358
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=83.87 E-value=3.9 Score=41.01 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-----CCeEEEeeCCCC-CCc-----------e-------------------ec
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-----GTKVVGGVSPGK-GGK-----------T-------------------HL 71 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-----g~~vv~~VnP~~-~g~-----------~-------------------i~ 71 (306)
..|++|+|-|+ |++|+.+.+.+.+. ++++++.+..+. .++ . +.
T Consensus 125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liin 203 (477)
T PRK08289 125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIAN 203 (477)
T ss_pred CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEEC
Confidence 45899999999 99999999987643 567886642111 000 0 12
Q ss_pred C--eeccC--CHHhhhh-cCCCc--EEEEecCchhHHHHHHHHHH-cCCCEEEEecC
Q psy8894 72 D--LPVFN--TVKEARD-ATGAE--ATVIYVPPPGAAKAIHEALD-AEMPLIVCITE 120 (306)
Q Consensus 72 G--ip~y~--sl~el~~-~~~iD--lavi~vp~~~~~~~~~e~~~-~Gi~~vvi~t~ 120 (306)
| ++++. +.+++|= +.++| ++|.++..-...+-+..=++ .|+|.|++-++
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP 260 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAP 260 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCC
Confidence 2 22232 3566652 23588 88888877777766666666 78888775333
No 359
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.82 E-value=8.3 Score=36.78 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-e-----EEEeeCCCC-----CCce--ec--------CeeccCC-HHhhhhcC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-K-----VVGGVSPGK-----GGKT--HL--------DLPVFNT-VKEARDAT 86 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~-----vv~~VnP~~-----~g~~--i~--------Gip~y~s-l~el~~~~ 86 (306)
+|.+|+|+|++|+.|......+...+. . -+..+|-+. .|.. +. .+.++.. .+++.
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--- 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK--- 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC---
Confidence 589999999999999876655554433 1 233555421 1111 11 1223322 34443
Q ss_pred CCcEEEEecCchh----------------HHHHHHHHHHcCC-CEEEEec
Q psy8894 87 GAEATVIYVPPPG----------------AAKAIHEALDAEM-PLIVCIT 119 (306)
Q Consensus 87 ~iDlavi~vp~~~----------------~~~~~~e~~~~Gi-~~vvi~t 119 (306)
+.|++|++..... ..++.++..+.+- .+++++.
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv 127 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV 127 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3899999743311 4556666767773 7766654
No 360
>KOG2774|consensus
Probab=83.79 E-value=31 Score=31.98 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=111.1
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHH-cCCe-EEE--eeCCCCC----Ccee-cCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIE-YGTK-VVG--GVSPGKG----GKTH-LDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~-~g~~-vv~--~VnP~~~----g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
-.++.+|.|.|+.|..|.-..+.|+. +|-+ ++- .+.|... |.-| .++-=|+++.++.-.+.+|-.+-+.
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfS-- 118 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFS-- 118 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhcccCCchhhhhhccccHHHhhcccccceeeeHH--
Confidence 56788999999988777766666655 4766 331 2445431 1111 1233455677777666688776543
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
.++....+.+++.++-. .-++...++ ++|+++++++.-|.++|-+-|....+.+-.-..-+|..|==||.-
T Consensus 119 ----ALLSAvGE~NVpLA~~V----NI~GvHNil-~vAa~~kL~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKV 189 (366)
T KOG2774|consen 119 ----ALLSAVGETNVPLALQV----NIRGVHNIL-QVAAKHKLKVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKV 189 (366)
T ss_pred ----HHHHHhcccCCceeeee----cchhhhHHH-HHHHHcCeeEeecccccccCCCCCCCCCCCeeeecCceeechhHH
Confidence 23445556777765421 123334444 478999999999999999988643322111112345555445432
Q ss_pred hh-hHHHHHHHHHhCCCc-----eEEEEec----CCCCCCCCCHHHHHHHhhc-------CCCccEEEEEEeeC
Q psy8894 178 GT-LTYEAVHQTTQVGLG-----QTLCVGI----GGDPFNGTNFIDCLEVFLK-------DPETKGIILIGEIG 234 (306)
Q Consensus 178 G~-~~~~~~~~~~~~g~g-----~s~~vs~----Gn~~~~dv~~~d~l~~l~~-------D~~t~~I~ly~E~~ 234 (306)
-+ +..+-+. .+.|+- |-..+|. |+. .|...+-|-+.+.+ -|+|+.=.||.|.-
T Consensus 190 HAEL~GEy~~--hrFg~dfr~~rfPg~is~~~pgggt--tdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc 259 (366)
T KOG2774|consen 190 HAELLGEYFN--HRFGVDFRSMRFPGIISATKPGGGT--TDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDC 259 (366)
T ss_pred HHHHHHHHHH--hhcCccceecccCcccccCCCCCCc--chhHHHHHHHHHHcCCcccccCCCccCceeehHHH
Confidence 21 1111111 233443 3445665 333 66667777666643 48999999998863
No 361
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.64 E-value=1.6 Score=34.31 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCcee-cCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTH-LDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~ 104 (306)
+.++|.|||. |+.+..-.+.|++.|.++. .+.|.. ..+.+ +--+-|+ +++. +.|+++.+++.+...+ +.
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~l~---~~~lV~~at~d~~~n~~i~ 78 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--EDLD---GADLVFAATDDPELNEAIY 78 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GGCT---TESEEEE-SS-HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HHHh---hheEEEecCCCHHHHHHHH
Confidence 4588999998 6655555667777888754 667762 00111 1112222 3332 2788888886655544 44
Q ss_pred HHHHHcCCC
Q psy8894 105 HEALDAEMP 113 (306)
Q Consensus 105 ~e~~~~Gi~ 113 (306)
++|.++|+.
T Consensus 79 ~~a~~~~i~ 87 (103)
T PF13241_consen 79 ADARARGIL 87 (103)
T ss_dssp HHHHHTTSE
T ss_pred HHHhhCCEE
Confidence 555556665
No 362
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.50 E-value=11 Score=37.89 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccC---CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFN---TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~---sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..++|+|+|. |+.|....+.|++.|++++ +.|.+.... +-.|+.++. ..+.+ . ++|++|....-...-+
T Consensus 11 ~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l-~--~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 11 PGAPVLVAGA-GVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQI-A--DYALVVTSPGFRPTAP 85 (488)
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHh-h--cCCEEEECCCCCCCCH
Confidence 3478999999 9999999998888999876 466432101 113555442 12223 2 3798877532222234
Q ss_pred HHHHHHHcCCC
Q psy8894 103 AIHEALDAEMP 113 (306)
Q Consensus 103 ~~~e~~~~Gi~ 113 (306)
.++.+.++|++
T Consensus 86 ~~~~a~~~gi~ 96 (488)
T PRK03369 86 VLAAAAAAGVP 96 (488)
T ss_pred HHHHHHHCCCc
Confidence 56666666655
No 363
>PRK08628 short chain dehydrogenase; Provisional
Probab=83.50 E-value=2 Score=38.47 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhc-CCCcEE-EEecCchhHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDA-TGAEAT-VIYVPPPGAAKAIHEA 107 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~-~~iDla-vi~vp~~~~~~~~~e~ 107 (306)
.+++.|.|+++..|+...+.|.+.|++++ .+..+. ... +. .+++... ..+... .+.+.++.....++++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~-~~~r~~--~~~---~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPV-IFGRSA--PDD---EF---AEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEE-EEcCCh--hhH---HH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999865 333322 111 11 2233211 012221 2345555566666666
Q ss_pred HHc--CCCEEEEecCCC
Q psy8894 108 LDA--EMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~--Gi~~vvi~t~Gf 122 (306)
.+. ++..++. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVN-NAGV 93 (258)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 553 5787664 5554
No 364
>PLN02477 glutamate dehydrogenase
Probab=83.33 E-value=10 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
+.++|+|.|+ |+.|+...+.|.+.|.++++..|.
T Consensus 205 ~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 4579999998 999999999999999999876444
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.32 E-value=4.5 Score=39.69 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeeccC-------CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVFN-------TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y~-------sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|+ |+.|+...+.|.+.|++++ .++++... ++ ..|++++. .+.++.- .+.|.++++++.+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChH
Confidence 37999999 9999999999999999876 66553210 11 13444332 1333311 24999999998866
Q ss_pred HHHHH-HHHHHc-CCCEEEEec
Q psy8894 100 AAKAI-HEALDA-EMPLIVCIT 119 (306)
Q Consensus 100 ~~~~~-~e~~~~-Gi~~vvi~t 119 (306)
....+ ..+.+. +...+++-+
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEEE
Confidence 65543 444454 666666544
No 366
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.31 E-value=2 Score=40.94 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce-------ecC--eeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT-------HLD--LPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~-------i~G--ip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
++++++|+|+ |.+++...+.+... ..+.+...|+.....+ -.| +.++.+.+++.+. .|+++.+||..
T Consensus 127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~--aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG--CDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc--CCEEEEecCCC
Confidence 4689999999 99999888776653 5555556666542111 124 4567789898875 99999999864
Q ss_pred hHHHHH-HHHHHcCCCEEEE
Q psy8894 99 GAAKAI-HEALDAEMPLIVC 117 (306)
Q Consensus 99 ~~~~~~-~e~~~~Gi~~vvi 117 (306)
. .++ .+.++.|.+..-+
T Consensus 204 ~--P~~~~~~l~~g~~v~~v 221 (325)
T TIGR02371 204 K--PVVKADWVSEGTHINAI 221 (325)
T ss_pred C--cEecHHHcCCCCEEEec
Confidence 3 333 5566778774443
No 367
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=83.24 E-value=11 Score=35.70 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC--eEEccCCCceecCccccccCCCCC
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS--RLIGPNCPGIIAPEQCKIGIMPGH 164 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi--~iiGPNc~Gi~~~~~~~~~~~~~~ 164 (306)
+-|+++--...+.+.+++..+.+.|.+--++.|++++.-+...+.+++ +++|+ .+|=...+|.+.......-.....
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L-~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~ 197 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKEL-RQSGIPVTVIVDSAVGAFMSRVDKVLVGADA 197 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHH-HHcCCceEEEechHHHHHHHhCCEEEECccc
Confidence 467777777889999999999999988777789999877655554444 67776 455455566665432211111222
Q ss_pred CCCCCCEEEEecChhhHHHHHHHHHhCCCceEE
Q psy8894 165 IHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197 (306)
Q Consensus 165 ~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~ 197 (306)
....| ++|+++|+...++. |++++..|--
T Consensus 198 I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v 226 (301)
T COG1184 198 ILANG--ALVNKIGTSPLALA--ARELRVPFYV 226 (301)
T ss_pred eecCC--cEEeccchHHHHHH--HHHhCCCEEE
Confidence 34455 89999999987765 4677776644
No 368
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=83.21 E-value=7.9 Score=36.44 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|-.|+...+.|++.|++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999998754
No 369
>PRK10433 putative RNA methyltransferase; Provisional
Probab=83.20 E-value=17 Score=32.98 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCCChHH--HHHHHHcCCeEEEeeCCCCCCce------------ecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFH--SKQAIEYGTKVVGGVSPGKGGKT------------HLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~--~~~l~~~g~~vv~~VnP~~~g~~------------i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
.+|+++.. ..++..+ .+.+..+|+.-+..|+|+....+ +...++|++++++... .+.++-++
T Consensus 3 i~vVLv~p-~~p~NiGaiaRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d--~~~vigtt 78 (228)
T PRK10433 3 LTIILVAP-ARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHD--VDFTVATT 78 (228)
T ss_pred eEEEEEcC-CCCccHHHHHHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHHh--CCeEEEEc
Confidence 46888887 6667655 68999999986668999842111 2245667777777664 56555443
No 370
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.01 E-value=5.5 Score=38.45 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP 63 (306)
.||+|-|+ |+.|+.+.|.+.+. ++++++.-+|
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCC
Confidence 58999999 99999999986654 7888854443
No 371
>PRK07411 hypothetical protein; Validated
Probab=82.85 E-value=8.8 Score=37.57 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..+|.|+|+ |-.|..+.++|...|+.-+..||+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 578999999 88999999999999998666888765
No 372
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=82.82 E-value=24 Score=32.26 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--e-ecCee--ccCCHHhhhhc-CCCcEEEEecCchhH-
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--T-HLDLP--VFNTVKEARDA-TGAEATVIYVPPPGA- 100 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~-i~Gip--~y~sl~el~~~-~~iDlavi~vp~~~~- 100 (306)
..+.++.|+|+ |..++...+.....||++. .+||+..-. . ..+.. .+...++.... ..-+.+|+.+.....
T Consensus 98 ~p~~~L~IfGa-G~va~~la~la~~lGf~V~-v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D 175 (246)
T TIGR02964 98 PPAPHVVLFGA-GHVGRALVRALAPLPCRVT-WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHALD 175 (246)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHhcCCCEEE-EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChHHH
Confidence 45679999999 8888888888888999986 788874100 0 01111 11222333221 124677777775443
Q ss_pred HHHHHHHH-HcCCCEEEEecC
Q psy8894 101 AKAIHEAL-DAEMPLIVCITE 120 (306)
Q Consensus 101 ~~~~~e~~-~~Gi~~vvi~t~ 120 (306)
.++++.++ +.....+=++-+
T Consensus 176 ~~~L~~aL~~~~~~YIG~lGS 196 (246)
T TIGR02964 176 LELCHAALRRGDFAYFGLIGS 196 (246)
T ss_pred HHHHHHHHhCCCCcEEEEeCC
Confidence 45677777 466666655443
No 373
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=82.65 E-value=1.5 Score=43.41 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecC-ee--ccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLD-LP--VFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~G-ip--~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|.|+|+ |.+|+...+.|.+.|...+..+|..... .. ..+ .. -|.++.+...+ .|++|-+|+..
T Consensus 180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCC
Confidence 3578999999 9999999999999998866789987411 11 111 11 12333343333 78888887653
No 374
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.62 E-value=8.7 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|..|+...+.|.+.|++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999997743
No 375
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.59 E-value=14 Score=36.32 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--C---ce--ecCeeccC--CHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--G---KT--HLDLPVFN--TVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g---~~--i~Gip~y~--sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.++|.|+|+ |+.|....+.|.+.|++++ ..|.+.. . ++ -.|++++. .-.++..+ .+|++|....-...
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~-~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~~~ 81 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT-VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVKNPGIPYT 81 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEECCCCCCC
Confidence 468999999 6699988999999999976 4453210 0 11 12555542 22333321 38877664311223
Q ss_pred HHHHHHHHHcCCCE
Q psy8894 101 AKAIHEALDAEMPL 114 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~ 114 (306)
...+++|.+.|++.
T Consensus 82 ~~~~~~a~~~~i~v 95 (447)
T PRK02472 82 NPMVEKALEKGIPI 95 (447)
T ss_pred CHHHHHHHHCCCcE
Confidence 35677787877764
No 376
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=82.54 E-value=6 Score=37.20 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCc-----ee--cCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGK-----TH--LDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~-----~i--~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|.|.|++|-.|+...+.|.+.| ++++ .++...... +. ..+..+ .++.++.+. +|+++-
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~-~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~--iD~Vih 80 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKII-IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG--VDYVVH 80 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE-EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhc--CCEEEE
Confidence 4789999999999999999888875 5665 333211000 00 112222 124444443 898886
Q ss_pred ecCc------------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 94 YVPP------------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 94 ~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+... ..+..+++.|.+.|++.++.+++.
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5321 124467778888899888877753
No 377
>PLN02778 3,5-epimerase/4-reductase
Probab=82.50 E-value=6.3 Score=36.74 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC----c--------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP----P-------- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp----~-------- 97 (306)
.++|.|.|++|-.|+...+.|.+.|++++.. .... .. ...+.......++|.++=+.- +
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~-~~~~-----~~---~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~ 79 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG-SGRL-----EN---RASLEADIDAVKPTHVFNAAGVTGRPNVDWCESH 79 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe-cCcc-----CC---HHHHHHHHHhcCCCEEEECCcccCCCCchhhhhC
Confidence 4689999999999999999999999987532 1111 00 011222222224888773321 1
Q ss_pred ---------hhHHHHHHHHHHcCCCEEEE
Q psy8894 98 ---------PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 98 ---------~~~~~~~~e~~~~Gi~~vvi 117 (306)
.....+++.|.+.|++.++.
T Consensus 80 p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 80 KVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 12345778888889987654
No 378
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.41 E-value=7.2 Score=38.23 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecCeecc-CC---HHhhhh--cCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLDLPVF-NT---VKEARD--ATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~Gip~y-~s---l~el~~--~~~iDlavi~vp~ 97 (306)
.+++|.|+|+ |+.|+...+.|.+.|++++ .|+....- + +..+++++ .+ .+.+.+ -.+.|.++++++.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~-vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVK-LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 3688999999 9999999999999899865 55433200 0 11233322 22 222211 1248988888876
Q ss_pred hhHHH-HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCCCc
Q psy8894 98 PGAAK-AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNCPG 149 (306)
Q Consensus 98 ~~~~~-~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc~G 149 (306)
+..-- ....|.+.+++.++..+. . ++. . +..+..|+ .++.|..++
T Consensus 308 ~~~n~~~~~~~~~~~~~~ii~~~~-~-~~~-~----~~~~~~g~~~vi~p~~~~ 354 (453)
T PRK09496 308 DEANILSSLLAKRLGAKKVIALVN-R-PAY-V----DLVEGLGIDIAISPRQAT 354 (453)
T ss_pred cHHHHHHHHHHHHhCCCeEEEEEC-C-cch-H----HHHHhcCCCEEECHHHHH
Confidence 54333 233445567776654332 1 111 1 13456676 566776654
No 379
>KOG0023|consensus
Probab=82.20 E-value=12 Score=35.86 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
...+..-++++|+|+-| .|..+.+..+.+|++++ .++-... + =+|+.+..+.|.-++++-.....+.
T Consensus 176 ~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~-vis~~~~-k----------keea~~~LGAd~fv~~~~d~d~~~~ 242 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVT-VISTSSK-K----------KEEAIKSLGADVFVDSTEDPDIMKA 242 (360)
T ss_pred HcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEE-EEeCCch-h----------HHHHHHhcCcceeEEecCCHHHHHH
Confidence 44666788999999955 99999999999999987 5554320 1 1233333346777777756666666
Q ss_pred HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS 140 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi 140 (306)
+.++.+-++..+.+++ +..++... ++.|..|.
T Consensus 243 ~~~~~dg~~~~v~~~a----~~~~~~~~-~~lk~~Gt 274 (360)
T KOG0023|consen 243 IMKTTDGGIDTVSNLA----EHALEPLL-GLLKVNGT 274 (360)
T ss_pred HHHhhcCcceeeeecc----ccchHHHH-HHhhcCCE
Confidence 7777788888877663 22233333 35666663
No 380
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.16 E-value=3.4 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=29.0
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
..+.+-++|+|+|+ |-.|..+.+..+..|.++++.
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~ 196 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAI 196 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEE
Confidence 35666789999999 788888999999999998743
No 381
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.07 E-value=7 Score=33.72 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+|+|+|+ |-+|....++|...|+.-+..+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5899999 99999999999999997555777764
No 382
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=81.95 E-value=22 Score=35.66 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--c-----eecCeeccC-CHH-hhhhcCCCcEEEEe--cCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--K-----THLDLPVFN-TVK-EARDATGAEATVIY--VPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~-----~i~Gip~y~-sl~-el~~~~~iDlavi~--vp~~ 98 (306)
.++|+|+|. |+.|....+.|.+.|.++. ..|-+..- . ...++++.. +.. +... .+|++|.. +|+.
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~~v~-v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~--~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGAEVT-VSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLA--EFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCCeEE-EEcCCCCccchhhhhhhccCceeecCccchhccc--cCCEEEECCCCCCC
Confidence 578999999 9999999999999998865 44432211 0 123433322 111 2222 38888875 4333
Q ss_pred hHHHHHHHHHHcCCCEE---------------EEecCCCC-hhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 99 GAAKAIHEALDAEMPLI---------------VCITEGIP-QLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~v---------------vi~t~Gf~-e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
-+.++++.+.|++.+ +.+ ||-. -.....++..+.++.|. ..+|-|-
T Consensus 83 --~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaI-TGTNGKTTTTsli~~~l~~~G~~~~lgGNI 145 (448)
T COG0771 83 --HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAI-TGTNGKTTTTSLIAHLLKAAGLDALLGGNI 145 (448)
T ss_pred --CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEE-ECCCchHHHHHHHHHHHHhcCCCceecccc
Confidence 337788877777643 111 2221 11234455567788886 5666663
No 383
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=81.89 E-value=1.9 Score=42.68 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce----ecCe--eccCCHHhhhhcCCCcEEEEecCchh---
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT----HLDL--PVFNTVKEARDATGAEATVIYVPPPG--- 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~----i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~--- 99 (306)
+.+++.|+|| |.||....+.|.+.|+..+...|......+ -.|. --|..+.+...+ .|+++.+|.+..
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCcccc
Confidence 5789999999 999999999999999887778998762111 1231 122333333434 899998865432
Q ss_pred HHHHHHHHHHcC
Q psy8894 100 AAKAIHEALDAE 111 (306)
Q Consensus 100 ~~~~~~e~~~~G 111 (306)
..+.++++.+..
T Consensus 254 ~~~~ve~a~~~r 265 (414)
T COG0373 254 TREMVERALKIR 265 (414)
T ss_pred CHHHHHHHHhcc
Confidence 244556665543
No 384
>PLN02206 UDP-glucuronate decarboxylase
Probab=81.82 E-value=6.7 Score=38.97 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
+.++|.|.|++|-.|+.+.+.|++.|++++...
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 458899999999999999999999999987543
No 385
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=81.75 E-value=6.7 Score=35.73 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+|.|+|+ |-.|....++|...|+.-+..+|+..
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5899999 88999999999999998666777764
No 386
>PLN02572 UDP-sulfoquinovose synthase
Probab=81.49 E-value=7.2 Score=38.69 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
.++|.|.|++|-.|+...+.|.+.|++++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 468999999999999999999999999763
No 387
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=81.47 E-value=8.7 Score=34.65 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCC----CCCc-----------eecC-eeccCCHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPG----KGGK-----------THLD-LPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~----~~g~-----------~i~G-ip~y~sl~el~~~~~iDla 91 (306)
.++|.|+|+ |..|+.+.+.+.+.|.+ .++.+|.+ .... +..+ .++..++.+..+. +|++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~--~dvl 101 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKG--ADVF 101 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhc--CCEE
Confidence 478999999 99999999999888987 77899987 2111 0011 1122356555554 8999
Q ss_pred EEecCchhH-HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 92 VIYVPPPGA-AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 92 vi~vp~~~~-~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
|=++|+-.. ++.++...+. +.+..++ ...++. +. +.|++.|.+++..
T Consensus 102 IgaT~~G~~~~~~l~~m~~~--~ivf~ls-nP~~e~---~~-~~A~~~ga~i~a~ 149 (226)
T cd05311 102 IGVSRPGVVKKEMIKKMAKD--PIVFALA-NPVPEI---WP-EEAKEAGADIVAT 149 (226)
T ss_pred EeCCCCCCCCHHHHHhhCCC--CEEEEeC-CCCCcC---CH-HHHHHcCCcEEEe
Confidence 988864332 4555555432 2222222 322221 22 2466778764443
No 388
>PLN00106 malate dehydrogenase
Probab=81.42 E-value=26 Score=33.45 Aligned_cols=96 Identities=15% Similarity=-0.029 Sum_probs=56.5
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCC-CCceec------Ceecc---C--CHHhhhhcCCCcEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGK-GGKTHL------DLPVF---N--TVKEARDATGAEAT 91 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~-~g~~i~------Gip~y---~--sl~el~~~~~iDla 91 (306)
.-..+.+|+|+|++|+.|......+...+. +++ .+|.+. .|...+ ...+. . ++.+... +.|++
T Consensus 14 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~-L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~--~aDiV 90 (323)
T PLN00106 14 GGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELH-LYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALK--GADLV 90 (323)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEE-EEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcC--CCCEE
Confidence 344578999999999999888766665443 443 555432 221110 11222 1 2233333 38999
Q ss_pred EEecCc--h--------------hHHHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 92 VIYVPP--P--------------GAAKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 92 vi~vp~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
|++... . .+.++++.+.+.+.+++++..+...+
T Consensus 91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 987432 1 23456677778899998887776543
No 389
>PRK06182 short chain dehydrogenase; Validated
Probab=81.27 E-value=9.3 Score=34.53 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++..|+...+.+.+.|++++ .+..+. +. +.++... +++.. .+...++.+...++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVY-GAARRV--DK---------MEDLASL-GVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999976 444332 11 2222221 13332 34566677777777776
Q ss_pred Hc--CCCEEEEecCCCC
Q psy8894 109 DA--EMPLIVCITEGIP 123 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf~ 123 (306)
+. ++..+++ ..|+.
T Consensus 70 ~~~~~id~li~-~ag~~ 85 (273)
T PRK06182 70 AEEGRIDVLVN-NAGYG 85 (273)
T ss_pred HhcCCCCEEEE-CCCcC
Confidence 54 6887664 55653
No 390
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.25 E-value=4.5 Score=38.21 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+-++|+|+|-|+.+|+.....|.+.|+++. ..|.+. . +++++... .|+++.+++....
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT--~---------~l~e~~~~--ADIVIsavg~~~~ 214 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRT--R---------DLPAVCRR--ADILVAAVGRPEM 214 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCC--C---------CHHHHHhc--CCEEEEecCChhh
Confidence 358999999999999999999999999865 454332 1 46777765 8999999988653
No 391
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=80.87 E-value=5.5 Score=37.06 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--CeEEEeeC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--TKVVGGVS 62 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--~~vv~~Vn 62 (306)
+|.|.|++|-.|+...+.|.+.| .++++.+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 48899999999999999999887 56765553
No 392
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.83 E-value=1.9 Score=40.27 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----ec----Cee--ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----HL----DLP--VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----i~----Gip--~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.++|.|+|+ |..|+.+...|.+.|.+-+..+|+.... +. +. ... .+.++.+...+ .|++|-+||.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCC--CCEEEECCcC
Confidence 3578999999 8899999999999998756688876411 00 00 011 12334443333 8999999875
Q ss_pred h
Q psy8894 98 P 98 (306)
Q Consensus 98 ~ 98 (306)
-
T Consensus 203 G 203 (284)
T PRK12549 203 G 203 (284)
T ss_pred C
Confidence 4
No 393
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.67 E-value=6 Score=38.98 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCceecC----eeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGKTHLD----LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~~i~G----ip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+|.++|=...-++...+.+.+.+.. .+..=|+.+ ....| -.+|.+++++..+ -|..|++||+++-.+++++
T Consensus 27 ~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h--~~l~G~~~id~~~~~~~~i~g~--WdtlILavtaDAY~~VL~q 102 (429)
T PF10100_consen 27 RVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQH--QALSGECTIDHVFQDYEEIEGE--WDTLILAVTADAYLDVLQQ 102 (429)
T ss_pred eeeeecCcchhHHHHHHHHHhCCCEEEEeecchhh--hhhcCeEEhhHhhcCHHHhccc--ccEEEEEechHHHHHHHHh
Confidence 4555543222233334555554443 232335544 22333 2478889999887 9999999999999999887
Q ss_pred HHH---cCCCEEEEecCCCChhH
Q psy8894 107 ALD---AEMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~---~Gi~~vvi~t~Gf~e~~ 126 (306)
.-. .++|.++.+++.|.-.-
T Consensus 103 l~~~~L~~vk~iVLvSPtfGS~~ 125 (429)
T PF10100_consen 103 LPWEVLKRVKSIVLVSPTFGSHL 125 (429)
T ss_pred cCHHHHhhCCEEEEECcccchHH
Confidence 654 57999999999886544
No 394
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=80.67 E-value=6.7 Score=38.26 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCCCChHHHH----HHHHcCCeEEEe--eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSK----QAIEYGTKVVGG--VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~----~l~~~g~~vv~~--VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+-++|+++...+.-|+...+ .+.+.|..++.- +.++. .+.......+..+..+....++|++|++.....+..
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~-~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~ 249 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASL-SDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFL 249 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCcc-CcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHH
Confidence 56789999776666766644 445557765432 33321 011001122333334333346999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+++++.+.|++.+|+.+.|..
T Consensus 250 l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 250 LFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHHHHhCCCeEEEEECccc
Confidence 999999999999999888774
No 395
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=80.44 E-value=8.1 Score=30.16 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCeEEEeeCCCCCCceecCeeccCC-HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHH
Q psy8894 54 GTKVVGGVSPGKGGKTHLDLPVFNT-VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKH 132 (306)
Q Consensus 54 g~~vv~~VnP~~~g~~i~Gip~y~s-l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~ 132 (306)
+.+++.+-+... ..+..+.+... ++++.+...++-++++.... .+++..|+.+++..++ +|.|...++. . .
T Consensus 7 ~~~~l~g~~~~~--~~~~~v~v~a~~~~~~~~~~~~~~lvIt~gdR--~di~~~a~~~~i~~iI-ltg~~~~~~~--v-~ 78 (105)
T PF07085_consen 7 DGEVLNGGEELD--RRVGKVVVGAMSLSDFLEYLKPGDLVITPGDR--EDIQLAAIEAGIACII-LTGGLEPSEE--V-L 78 (105)
T ss_dssp T-EEEE--TTS----EESEEEE-SS-HHHHHHCHHTTEEEEEETT---HHHHHHHCCTTECEEE-EETT----HH--H-H
T ss_pred CCEEEECCcccc--eEEeeEEEEECCHHHHHhhcCCCeEEEEeCCc--HHHHHHHHHhCCCEEE-EeCCCCCCHH--H-H
Confidence 556554443332 34555666654 66665532345555553333 7889999999999876 6888755432 2 2
Q ss_pred HHHHhcCCeEEc
Q psy8894 133 RLIRQSKSRLIG 144 (306)
Q Consensus 133 ~~ar~~gi~iiG 144 (306)
++|++.++.++.
T Consensus 79 ~la~~~~i~vi~ 90 (105)
T PF07085_consen 79 ELAKELGIPVIS 90 (105)
T ss_dssp HHHHHHT-EEEE
T ss_pred HHHHHCCCEEEE
Confidence 478888877664
No 396
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=80.32 E-value=10 Score=35.71 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCC---Cce-----------ec-CeeccCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKG---GKT-----------HL-DLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~---g~~-----------i~-Gip~y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......+...|. +++ .+|.... |.. .. -+....+++++. +.|++|++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~---~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTA---NSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhC---CCCEEEEc
Confidence 58999999 9999888777777665 644 5665321 110 01 122335677753 38999999
Q ss_pred cCc----------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPP----------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~----------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++. +.+.+++++..+.+-+.++++-+
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 773 23444566666666666665444
No 397
>PRK14852 hypothetical protein; Provisional
Probab=80.23 E-value=11 Score=41.24 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|-..|..-+..+|..........-.+..+ +.+...+.+|++=|.+.+..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 578999999 778999999999988875556666542111111111111 11111122356666555555
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++.+ .++..|+..+..|+. +....+.+.|+++++.++--.+.|
T Consensus 411 I~~en~~~fl-~~~DiVVDa~D~~~~-~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 VAAETIDAFL-KDVDLLVDGIDFFAL-DIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred CCHHHHHHHh-hCCCEEEECCCCccH-HHHHHHHHHHHHcCCCEEEeeccc
Confidence 5555566555 367766544444432 222233345778887777555544
No 398
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=80.21 E-value=2.8 Score=36.10 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=32.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCC
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~ 251 (306)
.+.+.++.+.+||++|+|++.+.+.+ .+.+||||++--|...
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence 34455566678999999999998765 2468999999887764
No 399
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.12 E-value=5.9 Score=39.09 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=49.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---cee----cCeeccC---CHHhhhhcCCCcEEEEe-
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTH----LDLPVFN---TVKEARDATGAEATVIY- 94 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i----~Gip~y~---sl~el~~~~~iDlavi~- 94 (306)
++.....|+|+|. |..|....+.|.+.|+++. +.|.+... +++ .|++++. +.+.+. + +|++|+.
T Consensus 2 ~~~~~~~~~v~G~-G~sG~s~a~~L~~~G~~v~-~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-~--~d~vV~sp 76 (448)
T PRK03803 2 LMQSDGLHIVVGL-GKTGLSVVRFLARQGIPFA-VMDSREQPPGLDTLAREFPDVELRCGGFDCELLV-Q--ASEIIISP 76 (448)
T ss_pred ccccCCeEEEEee-cHhHHHHHHHHHhCCCeEE-EEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhc-C--CCEEEECC
Confidence 3455678999999 8899888889999999875 55543211 111 2666643 333343 3 7887664
Q ss_pred -cCchhHHHHHHHHHHcCCC
Q psy8894 95 -VPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 95 -vp~~~~~~~~~e~~~~Gi~ 113 (306)
+|+. -+.+.++.++|++
T Consensus 77 ~i~~~--~p~~~~a~~~~i~ 94 (448)
T PRK03803 77 GLALD--TPALRAAAAMGIE 94 (448)
T ss_pred CCCCC--CHHHHHHHHCCCc
Confidence 3322 2345555555655
No 400
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=80.06 E-value=3 Score=37.16 Aligned_cols=42 Identities=26% Similarity=0.546 Sum_probs=33.3
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEeeCC-------------C--CCCCcEEEEEecCC
Q psy8894 209 TNFIDCLEVFLKDPETKGIILIGEIGG-------------G--PNAKPVVSFIAGIT 250 (306)
Q Consensus 209 v~~~d~l~~l~~D~~t~~I~ly~E~~~-------------~--~~~KPVvvlk~Grs 250 (306)
-++.+.|+.+.+||++++|++.+++.+ . ..+||||++--|..
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a 84 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLA 84 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 356677778889999999999998865 1 12799999998864
No 401
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.05 E-value=6.7 Score=36.88 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
-++|+|+|-|+-+|+-....|++.|.++. ..+.+. +++++...+ .|++|.+++.....+ .+.++
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----------~~l~~~~~~--ADIVI~avg~~~~v~--~~~ik 221 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----------RNLAEVARK--ADILVVAIGRGHFVT--KEFVK 221 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHhh--CCEEEEecCccccCC--HHHcc
Confidence 58999999999999999999999999864 334332 157777665 999999998766533 23344
Q ss_pred cCCCEEEEecCCCC
Q psy8894 110 AEMPLIVCITEGIP 123 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~ 123 (306)
.| .++ +--|++
T Consensus 222 ~G--avV-IDvgin 232 (284)
T PRK14179 222 EG--AVV-IDVGMN 232 (284)
T ss_pred CC--cEE-EEecce
Confidence 44 233 345553
No 402
>PRK08462 biotin carboxylase; Validated
Probab=79.96 E-value=13 Score=36.60 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hh--HHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PG--AAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~--~~~~ 103 (306)
.++|.|+|. |-.+.-.++.+++.|+++++...+.. .. .+-+.. .|-.+..-|. +. ...+
T Consensus 4 ~k~ili~~~-g~~~~~~~~~~~~~G~~~v~~~~~~d--~~------~~~~~~------ad~~~~~~~~~~~~~y~~~~~l 68 (445)
T PRK08462 4 IKRILIANR-GEIALRAIRTIQEMGKEAIAIYSTAD--KD------ALYLKY------ADAKICIGGAKSSESYLNIPAI 68 (445)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCCEEEEechhh--cC------Cchhhh------CCEEEEeCCCchhcccCCHHHH
Confidence 478999998 66666678888999999775433221 00 000111 2222211111 22 3456
Q ss_pred HHHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 104 IHEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
++.|.+.++..|+- +.|+ +|.. .. .+++++.|++++||+.-.+..
T Consensus 69 ~~~~~~~~~D~i~p-g~g~lse~~--~~-a~~~e~~Gi~~~g~~~~~~~~ 114 (445)
T PRK08462 69 ISAAEIFEADAIFP-GYGFLSENQ--NF-VEICSHHNIKFIGPSVEVMAL 114 (445)
T ss_pred HHHHHHcCCCEEEE-CCCccccCH--HH-HHHHHHCCCeEECcCHHHHHH
Confidence 77777788887663 4455 3332 11 235677888888877544433
No 403
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=79.89 E-value=5 Score=37.87 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~ 60 (306)
++|.|.|++|-.|+...+.|++. |+++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~ 32 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGM 32 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEE
Confidence 47999999999999999998876 7887744
No 404
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.87 E-value=4.5 Score=39.90 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---cee----cCeeccCCH--HhhhhcCCCcEEEEe--cCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTH----LDLPVFNTV--KEARDATGAEATVIY--VPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i----~Gip~y~sl--~el~~~~~iDlavi~--vp~~ 98 (306)
.++|.|+|+ |..|....+.|.+.|++++ +.|.+..- .++ .|++++..- +++.. ++|++|.. +|+.
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~~v~-~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~--~~d~vv~spgi~~~ 80 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGAEVA-AYDAELKPERVAQIGKMFDGLVFYTGRLKDALDN--GFDILALSPGISER 80 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHh--CCCEEEECCCCCCC
Confidence 468999999 8888888899999999866 55543211 111 366665321 22222 38998875 4432
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
-+.++.|.+.|++
T Consensus 81 --~p~~~~a~~~~i~ 93 (445)
T PRK04308 81 --QPDIEAFKQNGGR 93 (445)
T ss_pred --CHHHHHHHHcCCc
Confidence 2345555555554
No 405
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=79.80 E-value=2.6 Score=37.46 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=34.6
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCC
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~ 251 (306)
++.+.|+.+.+||++++|+|.+.+.+ +..+||||++--|.+.
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 46677888899999999999988765 2468999999988763
No 406
>PRK12828 short chain dehydrogenase; Provisional
Probab=79.79 E-value=11 Score=32.81 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|++|..|+...+.+.+.|++++ .++.+.. +.. ..+.++... ..++. .+....+....+++++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~~-~~~------~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA-LIGRGAA-PLS------QTLPGVPAD-ALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCChH-hHH------HHHHHHhhc-CceEEEeecCCHHHHHHHHHHHH
Confidence 57899999999999999999999999965 5554320 100 012222221 12222 23344566666677665
Q ss_pred Hc--CCCEEEEecCCC
Q psy8894 109 DA--EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf 122 (306)
+. ++..++. ..|.
T Consensus 78 ~~~~~~d~vi~-~ag~ 92 (239)
T PRK12828 78 RQFGRLDALVN-IAGA 92 (239)
T ss_pred HHhCCcCEEEE-CCcc
Confidence 53 5776664 5543
No 407
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=79.55 E-value=2.5 Score=36.45 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhH--HHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGA--AKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~--~~~~ 104 (306)
.-+++.|+|+ |+.|+-..+.++..|.+ .|.=+||-..- ....|+.+- +++++... .|+.+-+|....+ .+.+
T Consensus 22 ~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~--adi~vtaTG~~~vi~~e~~ 97 (162)
T PF00670_consen 22 AGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRD--ADIFVTATGNKDVITGEHF 97 (162)
T ss_dssp TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT---SEEEE-SSSSSSB-HHHH
T ss_pred CCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhh--CCEEEECCCCccccCHHHH
Confidence 3578999999 99999999999999998 44447775310 124687775 48888776 8998888877654 4555
Q ss_pred HHHHHcCCCEEEEecCCCC
Q psy8894 105 HEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+.+. =..+++ ..|..
T Consensus 98 ~~mk---dgail~-n~Gh~ 112 (162)
T PF00670_consen 98 RQMK---DGAILA-NAGHF 112 (162)
T ss_dssp HHS----TTEEEE-ESSSS
T ss_pred HHhc---CCeEEe-ccCcC
Confidence 5543 355554 44443
No 408
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.41 E-value=12 Score=29.19 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=46.7
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeecc-CC------HHhhhhcCCCcEEEEecCchhHHH
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVF-NT------VKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y-~s------l~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|+|+|. |+.|+...+.|++.+.+++ .|+.+... + ...|++++ .+ +.++.- .+.|.++++++.+..--
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vv-vid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVV-VIDRDPERVEELREEGVEVIYGDATDPEVLERAGI-EKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEE-EEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEE-EEECCcHHHHHHHhcccccccccchhhhHHhhcCc-cccCEEEEccCCHHHHH
Confidence 679999 8899999999999766765 56655300 0 12244432 22 333322 25899999987765543
Q ss_pred -HHHHHHHc-CCCEEEE
Q psy8894 103 -AIHEALDA-EMPLIVC 117 (306)
Q Consensus 103 -~~~e~~~~-Gi~~vvi 117 (306)
++..+.+. +...++.
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 33444443 3344443
No 409
>PRK07340 ornithine cyclodeaminase; Validated
Probab=79.15 E-value=0.94 Score=42.75 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-----ee--cCeec-cCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-----TH--LDLPV-FNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-----~i--~Gip~-y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
++++++|+|+ |.+++...+.+.. .+.+.+...|+..... ++ .++++ +.+++++..+ .|+++.+||...
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~--aDiVitaT~s~~ 200 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEA--VDLVVTATTSRT 200 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhc--CCEEEEccCCCC
Confidence 4689999999 9999999888765 5777666777764111 11 12232 5678877765 999999999775
Q ss_pred HHHHHHHHHHcCCCEEE
Q psy8894 100 AAKAIHEALDAEMPLIV 116 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vv 116 (306)
.+++..++.|.+...
T Consensus 201 --Pl~~~~~~~g~hi~~ 215 (304)
T PRK07340 201 --PVYPEAARAGRLVVA 215 (304)
T ss_pred --ceeCccCCCCCEEEe
Confidence 455555566665433
No 410
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.15 E-value=4.7 Score=39.93 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEE-eeCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH-HH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVG-GVSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA-IH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~-~VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~-~~ 105 (306)
.-++|+|+|+ |..|+...+.++..|.+++. -++|.+.. ....|..+. +++++... .|+++.++....+... .-
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~--aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKE--GDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcC--CCEEEECCCCHHHHHHHHH
Confidence 4679999999 99999999999999998653 24554310 012455443 35565544 8999999876554332 23
Q ss_pred HHHHcCC
Q psy8894 106 EALDAEM 112 (306)
Q Consensus 106 e~~~~Gi 112 (306)
++.+.|.
T Consensus 277 ~~mk~Gg 283 (413)
T cd00401 277 EQMKDGA 283 (413)
T ss_pred hcCCCCc
Confidence 3444443
No 411
>PRK09186 flagellin modification protein A; Provisional
Probab=79.14 E-value=6.2 Score=35.02 Aligned_cols=86 Identities=10% Similarity=0.119 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE-EEEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA-TVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl-avi~vp~~~~~~~~~e~ 107 (306)
+.+++.|.|+++..|+...+.|.+.|++++ .++.+. +... ....++........++. ..+...++.+.++++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~-~~~r~~--~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVI-AADIDK--EALN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEecCh--HHHH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999999999976 444332 1110 01111111101111233 23455666677777776
Q ss_pred HH--cCCCEEEEec
Q psy8894 108 LD--AEMPLIVCIT 119 (306)
Q Consensus 108 ~~--~Gi~~vvi~t 119 (306)
.+ .++..++..+
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 55 2467666533
No 412
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.12 E-value=24 Score=29.31 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec----CchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 48 KQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV----PPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 48 ~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v----p~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
..++..||++++. .+-. . +.+.+...++++|++.++. ....+.++++++.+.|.+.+.++-.|.
T Consensus 25 ~~lr~~G~eVi~LG~~vp----------~-e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 25 RALTEAGFEVINLGVMTS----------Q-EEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHHHHCCCEEEECCCCCC----------H-HHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 3556679997642 2221 1 1233444445799998864 234556677777777553332233443
Q ss_pred C---hhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 123 P---QLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 123 ~---e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
. +.+-++.. +..++.|+ ++.+|++
T Consensus 94 ~~~~~~~~~~~~-~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 94 LVVGKHDFEEVE-KKFKEMGFDRVFPPGT 121 (137)
T ss_pred CCCCccChHHHH-HHHHHcCCCEEECcCC
Confidence 2 22222222 24578887 6778776
No 413
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.06 E-value=10 Score=35.02 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC----------------Cc-----------------eecCeecc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG----------------GK-----------------THLDLPVF 76 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~----------------g~-----------------~i~Gip~y 76 (306)
..+|+|+|+ |-.|++..+.|-+.|..-+-.||.... |+ ++..+..|
T Consensus 30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 468999999 999999999998888763334444321 10 12222222
Q ss_pred ---CCHHhhhhcCCCcEEEEecCchhH-HHHHHHHHHcCCCEEEE
Q psy8894 77 ---NTVKEARDATGAEATVIYVPPPGA-AKAIHEALDAEMPLIVC 117 (306)
Q Consensus 77 ---~sl~el~~~~~iDlavi~vp~~~~-~~~~~e~~~~Gi~~vvi 117 (306)
.+++++... ++|.+|++.-.-.+ .+++.+|.+++++.|-+
T Consensus 109 ~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 109 ITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred hCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 246666554 69999998654333 56788899999986543
No 414
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.02 E-value=5.9 Score=36.87 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecC-eeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLD-LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+..+++|+|+ |..|....+.++.+|.+.+..++.+....+..+ ..++..-++. ...+|+++.++......+..-++
T Consensus 144 ~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~--~~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDP--RRDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhcc--CCCCCEEEECCCCHHHHHHHHHh
Confidence 4567999997 888988888888889986556665431111111 1111111111 12367777777665444444444
Q ss_pred HHcCCC
Q psy8894 108 LDAEMP 113 (306)
Q Consensus 108 ~~~Gi~ 113 (306)
++.+=+
T Consensus 221 l~~~G~ 226 (308)
T TIGR01202 221 LAKGGE 226 (308)
T ss_pred hhcCcE
Confidence 454433
No 415
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.02 E-value=3.1 Score=39.41 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-----ee--cC--eeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-----TH--LD--LPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-----~i--~G--ip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++|+|+|+ |.+|+...+.+.. .+.+-+...|+..... +. .| +.++.+++++..+ .|+++-++|..
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~--aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQ--ADIISCATLST 200 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhc--CCEEEEeeCCC
Confidence 4689999998 9999998876555 5655445677653111 11 13 5567788877765 89998788765
Q ss_pred hHHHHH-HHHHHcCC
Q psy8894 99 GAAKAI-HEALDAEM 112 (306)
Q Consensus 99 ~~~~~~-~e~~~~Gi 112 (306)
..++ .+.++.|.
T Consensus 201 --~pvl~~~~l~~g~ 213 (314)
T PRK06141 201 --EPLVRGEWLKPGT 213 (314)
T ss_pred --CCEecHHHcCCCC
Confidence 3333 35566676
No 416
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=79.00 E-value=3.4 Score=39.37 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCce-----e---cCee--ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGKT-----H---LDLP--VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~~-----i---~Gip--~y~sl~el~~~~~iDlavi~vp~ 97 (306)
..++++|+|+ |.+++...+.+.. .+++.+...|+.....+ + .|++ .+.++++...+ .|+++-+||.
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~--aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG--ADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc--CCEEEEecCC
Confidence 4678999999 9999999888864 57776667777642111 1 1443 36778887765 9999999987
Q ss_pred hhHHHHH-HHHHHcCCCE
Q psy8894 98 PGAAKAI-HEALDAEMPL 114 (306)
Q Consensus 98 ~~~~~~~-~e~~~~Gi~~ 114 (306)
.. .++ .+.++.|.+.
T Consensus 205 ~~--p~i~~~~l~~g~~i 220 (326)
T TIGR02992 205 ET--PILHAEWLEPGQHV 220 (326)
T ss_pred CC--cEecHHHcCCCcEE
Confidence 54 344 4566777653
No 417
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.96 E-value=6.6 Score=35.98 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHcCCe-EEEeeCCCCCCce---ecCe--eccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH-cCCCEEEEecC
Q psy8894 48 KQAIEYGTK-VVGGVSPGKGGKT---HLDL--PVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITE 120 (306)
Q Consensus 48 ~~l~~~g~~-vv~~VnP~~~g~~---i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~-~Gi~~vvi~t~ 120 (306)
+.|++.|+. .|.+.|++....+ -.|+ ..+.+.+.+ .+ .|++|+|+|.+...+++++... .....+|.=.+
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~--~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAV-ED--ADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG-GC--CSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh-cC--CCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 567777743 3447777641111 1243 233443443 43 8999999999999999999988 45555554333
Q ss_pred CC
Q psy8894 121 GI 122 (306)
Q Consensus 121 Gf 122 (306)
+.
T Consensus 80 Sv 81 (258)
T PF02153_consen 80 SV 81 (258)
T ss_dssp S-
T ss_pred CC
Confidence 44
No 418
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=78.96 E-value=3.4 Score=40.78 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.++|+|+|+ |.+|....+.+...|+..+..+|+..
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 34589999999 99999999999989865444777653
No 419
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=78.94 E-value=1.1 Score=35.62 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+......+++.|.+.+|..+++ . +|+-+.+=+.+..++.|+++.||.
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvv-G---PE~pL~~Gl~D~l~~~gi~vfGP~ 93 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVV-G---PEAPLVAGLADALRAAGIPVFGPS 93 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEE-S---SHHHHHTTHHHHHHHTT-CEES--
T ss_pred CCCCHHHHHHHHHHcCCCEEEE-C---ChHHHHHHHHHHHHHCCCcEECcC
Confidence 4455566677777777776665 2 133222222233466777777775
No 420
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=78.92 E-value=16 Score=34.80 Aligned_cols=88 Identities=9% Similarity=-0.022 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-------eEEEeeCCCC-----CCce--e--------cCeeccCC-HHhhhhc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-------KVVGGVSPGK-----GGKT--H--------LDLPVFNT-VKEARDA 85 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-------~vv~~VnP~~-----~g~~--i--------~Gip~y~s-l~el~~~ 85 (306)
+|-+|+|+|++|..|....-.+...+. ++ ..+|.+. .|.. + .+..++.+ .+++.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el-~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~-- 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVL-HLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK-- 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEE-EEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC--
Confidence 689999999999999877655555443 44 3555432 1211 0 01222222 33443
Q ss_pred CCCcEEEEecCch----------------hHHHHHHHHHHcCC-CEEEEecC
Q psy8894 86 TGAEATVIYVPPP----------------GAAKAIHEALDAEM-PLIVCITE 120 (306)
Q Consensus 86 ~~iDlavi~vp~~----------------~~~~~~~e~~~~Gi-~~vvi~t~ 120 (306)
+.|++|++.... ...++++++.+.+- ++++++.+
T Consensus 79 -daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 79 -DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred -CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 389999874332 14556677777776 77776553
No 421
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=78.87 E-value=13 Score=34.11 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=50.1
Q ss_pred EEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCce---ecCeecc------CCHHhhhhc--CCCcEEEEecCc---
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKT---HLDLPVF------NTVKEARDA--TGAEATVIYVPP--- 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~---i~Gip~y------~sl~el~~~--~~iDlavi~vp~--- 97 (306)
|.|.|++|-.|+...+.|.+.|+ +++ .++....... ..+.... ..++.+.+. .++|+++-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~ 79 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL-VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT 79 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE-EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence 57999999999999999999997 454 4543221111 1111111 123333320 259998866532
Q ss_pred -------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 -------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 -------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.+++ ++.+++
T Consensus 80 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 114 (314)
T TIGR02197 80 TETDGEYMMENNYQYSKRLLDWCAEKGIP-FIYASS 114 (314)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCCc-EEEEcc
Confidence 1234467888888886 444554
No 422
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=78.74 E-value=12 Score=37.11 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hh--HHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PG--AAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~--~~~~ 103 (306)
.+||.|+|. |..+...++.+++.|++++ .+++.. +.. -+.+. + .|-.+..-|. +. ...+
T Consensus 2 ~kkili~g~-g~~~~~~~~aa~~lG~~vv-~~~~~~--d~~--a~~~~-~--------aD~~~~~~~~~~~~~y~d~~~l 66 (449)
T TIGR00514 2 LDKILIANR-GEIALRILRACKELGIKTV-AVHSTA--DRD--ALHVL-L--------ADEAVCIGPAPSAKSYLNIPNI 66 (449)
T ss_pred cceEEEeCC-CHHHHHHHHHHHHcCCeEE-EEEChh--hhc--ccccc-c--------CCEEEEcCCCCchhchhCHHHH
Confidence 468999998 7777777889999999977 454421 000 01110 1 1222211111 11 2346
Q ss_pred HHHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 104 IHEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
++.|.+.++..++- ..|| +|... . .+.+++.|++++||+.
T Consensus 67 ~~~a~~~~id~I~p-g~g~~se~~~--~-a~~~e~~Gi~~~g~~~ 107 (449)
T TIGR00514 67 ISAAEITGADAIHP-GYGFLSENAN--F-AEQCERSGFTFIGPSA 107 (449)
T ss_pred HHHHHHhCCCEEEe-CCCccccCHH--H-HHHHHHCCCcEECcCH
Confidence 66667777776553 3344 33221 1 2356677777777654
No 423
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=78.72 E-value=15 Score=34.33 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=49.3
Q ss_pred EEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCc---e--e------c----CeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGK---T--H------L----DLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~---~--i------~----Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
|+|+|+ |.+|......+...|. +++ .+|.+..-. . . . .+....+.+++. +.|++|+++.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~-L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~---dADiVIit~g 75 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIA---GSDVVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEE-EEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhC---CCCEEEEecC
Confidence 689999 9999887666666554 654 656543100 0 0 0 122234566653 3899998763
Q ss_pred c----------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 97 P----------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 97 ~----------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
. +...+++++..+..-+.++++.+.
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 224456677777777776554543
No 424
>PRK08291 ectoine utilization protein EutC; Validated
Probab=78.65 E-value=2.6 Score=40.20 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCce--------ecCee--ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGKT--------HLDLP--VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~~--------i~Gip--~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.+++++|+|+ |.+++.+...+.. .+++.+...|+.....+ ..|++ .+.+++++..+ .|+++.++|.
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~--aDiVi~aT~s 207 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG--ADIIVTTTPS 207 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc--CCEEEEeeCC
Confidence 4578999999 9999988887775 47776667777631100 12444 46788887765 8999999887
Q ss_pred hhHHHHHH-HHHHcCCC
Q psy8894 98 PGAAKAIH-EALDAEMP 113 (306)
Q Consensus 98 ~~~~~~~~-e~~~~Gi~ 113 (306)
.. .+++ +.++.|.+
T Consensus 208 ~~--p~i~~~~l~~g~~ 222 (330)
T PRK08291 208 EE--PILKAEWLHPGLH 222 (330)
T ss_pred CC--cEecHHHcCCCce
Confidence 53 4443 34566655
No 425
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=78.55 E-value=6.2 Score=36.35 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----ec--C-eeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----HL--D-LPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----i~--G-ip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.+++.|+|+ |.+|+.....+.+.|+++. .+|..... ++ +. + ..+ .++++... .+.|++|-++|....
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~-v~~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~-~~~DivInatp~gm~ 191 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVI-IANRTVSKAEELAERFQRYGEIQA-FSMDELPL-HRVDLIINATSAGMS 191 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHHhhcCceEE-echhhhcc-cCccEEEECCCCCCC
Confidence 4678999999 8899999988988898754 66654310 11 10 1 122 23444322 248999999987432
Q ss_pred HH-----HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 101 AK-----AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 101 ~~-----~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.+ +..+.+..+. .++-+.....++. ++ +.|++.|.+++.
T Consensus 192 ~~~~~~~~~~~~l~~~~-~v~D~~y~p~~T~---ll-~~A~~~G~~~vd 235 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGM-VVYDMVYNPGETP---FL-AEAKSLGTKTID 235 (270)
T ss_pred CCCCCCCCCHHHcCCCC-EEEEeccCCCCCH---HH-HHHHHCCCeeeC
Confidence 21 1133344443 2333444443442 33 357899988773
No 426
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=78.50 E-value=3.8 Score=36.20 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=33.9
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCC
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~ 251 (306)
.+.+.|+.+.+||+.++|++++.+.+ ...+||||++--|.+.
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 45677778888999999999998765 2458999999988753
No 427
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.41 E-value=15 Score=36.25 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------ecC-eeccCCHHhhhhc-CCCcEEEEecCc-hh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------HLD-LPVFNTVKEARDA-TGAEATVIYVPP-PG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------i~G-ip~y~sl~el~~~-~~iDlavi~vp~-~~ 99 (306)
..|.|||. +-||+...-|+.++||++. .-|....-.+ -.. +|+| |++|+... ..|--+++.|-+ ..
T Consensus 4 ~~iGviGL-aVMG~NLaLNi~~~G~~Va-vyNRt~~ktd~f~~~~~~~k~i~~~~-sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 4 ADIGVIGL-AVMGSNLALNIADHGYTVA-VYNRTTEKTDEFLAERAKGKNIVPAY-SIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred cceeeEeh-hhhhHHHHHHHHhcCceEE-EEeCCHHHHHHHHHhCccCCCccccC-cHHHHHHHhcCCceEEEEEecCCc
Confidence 56899999 9999999999999999974 6666531100 011 3444 47777643 137777776655 33
Q ss_pred HHHHHHHHHHc-CCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 100 AAKAIHEALDA-EMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
+..+++++.-. .-.-|+ +-.|=+. .|..++.+++ ++.|+..+|-.--|
T Consensus 81 VD~~I~~L~p~Le~gDIi-IDGGNs~y~DT~RR~~eL-~~~Gi~FvG~GVSG 130 (473)
T COG0362 81 VDAVIEQLLPLLEKGDII-IDGGNSHYKDTIRRNKEL-SEKGILFVGMGVSG 130 (473)
T ss_pred HHHHHHHHHhhcCCCCEE-EeCCCcCCchHHHHHHHH-HhcCCeEEeccccc
Confidence 44455555543 222334 4555431 2334444444 68899999865433
No 428
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=78.28 E-value=8.1 Score=32.02 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhH------HHHHHHHHHHhcC-CeEEccCCC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLD------MVKVKHRLIRQSK-SRLIGPNCP 148 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~------~~~~~~~~ar~~g-i~iiGPNc~ 148 (306)
...+.++++++.+.|++.|+++..||.-+. +....+++++++| ..+.-..|+
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~l 134 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCL 134 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 345889999999999999999999996432 2333345678887 555555554
No 429
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=78.22 E-value=18 Score=36.00 Aligned_cols=119 Identities=11% Similarity=0.081 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHh-----------hhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKE-----------ARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~e-----------l~~~~~iDlavi~vp~- 97 (306)
..+|.|+|+ |-.|....++|.-.|..-+..||+......-.|.-.|-+-++ ...+..||+-+-+...
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 668988999999999986668888753222222221211111 1122246666555432
Q ss_pred -hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 98 -PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 98 -~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
+...+...+.. .+...|+ .+..++....+ +.++|++.++.++-..|.|++-.
T Consensus 99 ~~~ll~~~~~f~-~~fdiVI--~t~~~~~~~~~-L~~~c~~~~iPlI~~~s~G~~G~ 151 (425)
T cd01493 99 PEALLDNDPSFF-SQFTVVI--ATNLPESTLLR-LADVLWSANIPLLYVRSYGLYGY 151 (425)
T ss_pred cchhhhhHHHHh-cCCCEEE--ECCCCHHHHHH-HHHHHHHcCCCEEEEecccCEEE
Confidence 11111111221 3445443 34444444333 34578899998888888887753
No 430
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.12 E-value=4.5 Score=40.49 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=47.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCeeccCC---HHhhhhcCCCcEEEEe--cCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLPVFNT---VKEARDATGAEATVIY--VPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip~y~s---l~el~~~~~iDlavi~--vp~~~~ 100 (306)
.++|.|+|+ |..|+...+.|.+.|+++. +.|.+.... +..|++++.. .+.+. ++|++|.. +|+..
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~---~~d~vV~Spgi~~~~- 88 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELGCDVV-VADDNETARHKLIEVTGVADISTAEASDQLD---SFSLVVTSPGWRPDS- 88 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCChHHHHHHHHhcCcEEEeCCCchhHhc---CCCEEEeCCCCCCCC-
Confidence 467999998 9999988999999999754 666432111 1236666531 22232 27777654 34332
Q ss_pred HHHHHHHHHcCCC
Q psy8894 101 AKAIHEALDAEMP 113 (306)
Q Consensus 101 ~~~~~e~~~~Gi~ 113 (306)
+.+.++.+.|++
T Consensus 89 -p~~~~a~~~gi~ 100 (473)
T PRK00141 89 -PLLVDAQSQGLE 100 (473)
T ss_pred -HHHHHHHHCCCc
Confidence 445566666663
No 431
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=77.99 E-value=4.3 Score=38.45 Aligned_cols=219 Identities=19% Similarity=0.242 Sum_probs=102.5
Q ss_pred eCCCCCCcee-------cCeeccCCHHhhhhcCCCcEEEEecCc------hhHHHHHHHHHHcCCCEEEEecCCCC--hh
Q psy8894 61 VSPGKGGKTH-------LDLPVFNTVKEARDATGAEATVIYVPP------PGAAKAIHEALDAEMPLIVCITEGIP--QL 125 (306)
Q Consensus 61 VnP~~~g~~i-------~Gip~y~sl~el~~~~~iDlavi~vp~------~~~~~~~~e~~~~Gi~~vvi~t~Gf~--e~ 125 (306)
||++..|... .|+|+|.++++... ++|..|+-+.+ +...+.+.+++++|... +. |+- -.
T Consensus 1 ID~~~aG~~a~e~~~~~~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I-vs---GLH~~L~ 74 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGGKRGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI-VS---GLHDFLS 74 (301)
T ss_dssp E-TTTTTSBHHHCCSSSS--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE-EE----SSS-HC
T ss_pred CCcccCCCcHHHhcCCCCCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE-Ee---cChhhhc
Confidence 3555555443 79999999999943 59999985432 45668999999999983 42 332 12
Q ss_pred HHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCC--CCCCCCEEEEec---ChhhHHH--HHHHHHhCCCceEEE
Q psy8894 126 DMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGH--IHQRGCVGVVSR---SGTLTYE--AVHQTTQVGLGQTLC 198 (306)
Q Consensus 126 ~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~--~~~~G~va~vSq---SG~~~~~--~~~~~~~~g~g~s~~ 198 (306)
+..++ .++|+++|.+++--.-. +.. ..++... ....=.|..+-. .|=+.++ +...++++|+- +.|
T Consensus 75 ddpel-~~~A~~~g~~i~DvR~p----~~~--~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~f 146 (301)
T PF07755_consen 75 DDPEL-AAAAKKNGVRIIDVRKP----PKD--LPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGF 146 (301)
T ss_dssp CHHHH-HCCHHCCT--EEETTS------SS-------SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEE
T ss_pred cCHHH-HHHHHHcCCeEeeccCC----Ccc--cccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceE
Confidence 22333 34789999887754443 000 0111111 112224666654 4544444 34667788875 567
Q ss_pred EecCCCC--------CCCCC--------HHHHHHHhhcCCCccEEEEEEeeCC-----------------CCCCCcEEEE
Q psy8894 199 VGIGGDP--------FNGTN--------FIDCLEVFLKDPETKGIILIGEIGG-----------------GPNAKPVVSF 245 (306)
Q Consensus 199 vs~Gn~~--------~~dv~--------~~d~l~~l~~D~~t~~I~ly~E~~~-----------------~~~~KPVvvl 245 (306)
++||-.. ..|-- ...++-...+ ++ ..| .+|+-+ .....=|++.
T Consensus 147 vaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~-d~i--vVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H 222 (301)
T PF07755_consen 147 VATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EH-DWI--VVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCH 222 (301)
T ss_dssp EE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C--SEE--EEE--S-TTSTTTHHCHHHHHHHH--SEEEEEE
T ss_pred EecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CC-CEE--EEeccccccCccccccchhhhccCCCCeEEEEe
Confidence 8888541 01111 1223333333 44 666 455544 2344456677
Q ss_pred EecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeE---------e----CCHhHHHHHHHHHHHhhcC
Q psy8894 246 IAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIV---------T----RSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 246 k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~---------~----~~~~el~~~~~~~~~~~~~ 305 (306)
.+||..-.+ +-|+ .| .+-....++.++.+-.. . -+.+|..+.++.+-+++||
T Consensus 223 ~p~r~~~~~--~p~~-~i-----p~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~gl 287 (301)
T PF07755_consen 223 APGRKHRDG--FPHY-PI-----PPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGL 287 (301)
T ss_dssp ETT-SC-TT--STTS-C--------HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S
T ss_pred cCCcccccC--CCcC-CC-----CCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCC
Confidence 777764212 2221 11 13333445555555443 1 2456677777777777776
No 432
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.94 E-value=8 Score=38.67 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
.++|+|+|. |+.|....+.|.+.|.+++ ..|.
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~g~~v~-~~d~ 39 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAHLPAQA-LTLF 39 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHcCCEEE-EEcC
Confidence 368999999 9999999999999999965 4553
No 433
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.77 E-value=15 Score=34.25 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCC---Cc--ee------c--Ceec--cCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKG---GK--TH------L--DLPV--FNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~---g~--~i------~--Gip~--y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......+...|. +++ .+|.... +. +. . ..++ ..+.+++. +.|++|++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~---~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIA---GSDVVVIT 77 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHC---CCCEEEEC
Confidence 68999999 9999887777766654 654 5554321 10 00 0 1122 23455553 38999988
Q ss_pred cC--c--------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VP--P--------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp--~--------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+. . +...+++++..+.+-+.++++.+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 53 2 33566667777777676555444
No 434
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.49 E-value=16 Score=32.54 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++-.|+...+.|.+.|++++...... ++ ..+++... ++. +..+.+.++.+.+.++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~---~~--------~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA---EN--------EAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc---HH--------HHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999976332211 10 11222221 122 2334566777777887776
Q ss_pred Hc--CCCEEEEecCCC
Q psy8894 109 DA--EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf 122 (306)
+. ++..++ ...|+
T Consensus 75 ~~~~~id~li-~~ag~ 89 (255)
T PRK06463 75 KEFGRVDVLV-NNAGI 89 (255)
T ss_pred HHcCCCCEEE-ECCCc
Confidence 64 477655 45555
No 435
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=77.46 E-value=7.5 Score=35.33 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=41.3
Q ss_pred CeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH--cCCCEEEEecCCCChhHHHH
Q psy8894 72 DLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD--AEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 72 Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~--~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
|+.++.+..++.++ .|+++++++|....+++++... ..=+.++-++.|++-+++++
T Consensus 30 g~~~~~~~~e~~~~--aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~ 87 (245)
T TIGR00112 30 GIVASSDAQEAVKE--ADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQ 87 (245)
T ss_pred CcEEeCChHHHHhh--CCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHH
Confidence 44445666777665 8999999999999999988863 22356666888998766544
No 436
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.45 E-value=6.8 Score=40.18 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=66.4
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC------------------ceecCeeccCCHHhhhhcC
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG------------------KTHLDLPVFNTVKEARDAT 86 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g------------------~~i~Gip~y~sl~el~~~~ 86 (306)
..+-+.++|.|.|+.|..|+...+.+.+++-+.+-..+..... ..+.+++=+..+.++.+.+
T Consensus 245 ~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 245 GAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred HhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 3445568999999999999999999888877633344433211 0133444455577777666
Q ss_pred CCcEEEEec-----C------c-------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 87 GAEATVIYV-----P------P-------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 87 ~iDlavi~v-----p------~-------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.||++.=+. | - -.+..+++.|.+.|++.++++|+.
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD 377 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD 377 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC
Confidence 799887542 2 1 124568889999999999999974
No 437
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=77.43 E-value=2.6 Score=43.59 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=50.1
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG----------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~----------- 235 (306)
..+.|++|.-+|.+... .+. .-.+|.+ ++.+.|+.+.+||++|+|+|.+.+.+
T Consensus 306 ~~~~vavI~~~G~I~~~-------~~~----~~~~~~~-----~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADG-------RDT----EGNTGGD-----TVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCC-------CCc----ccccCHH-----HHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence 46789999999988532 110 0012222 46788899999999999999999876
Q ss_pred -----CCCCCcEEEEEecCCC
Q psy8894 236 -----GPNAKPVVSFIAGITA 251 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~ 251 (306)
+..+||||+.-.|...
T Consensus 370 ~i~~~~~~gKPVva~~~g~aa 390 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAA 390 (584)
T ss_pred HHHHHHhCCCcEEEEECCccc
Confidence 2457999999888654
No 438
>PRK05693 short chain dehydrogenase; Provisional
Probab=77.31 E-value=13 Score=33.67 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE-EEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA-TVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl-avi~vp~~~~~~~~~e~~~ 109 (306)
+++.|.|+++-.|+...+.+.+.|++++ .++.+. +. ++++... +.+. ..+....+...++++++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVW-ATARKA--ED---------VEALAAA-GFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999976 444432 11 2222221 2332 2455667777788888765
Q ss_pred c--CCCEEEEecCCC
Q psy8894 110 A--EMPLIVCITEGI 122 (306)
Q Consensus 110 ~--Gi~~vvi~t~Gf 122 (306)
. ++..++. ..|+
T Consensus 69 ~~~~id~vi~-~ag~ 82 (274)
T PRK05693 69 EHGGLDVLIN-NAGY 82 (274)
T ss_pred hcCCCCEEEE-CCCC
Confidence 3 5787665 5564
No 439
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=77.29 E-value=17 Score=36.10 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=52.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCC-ceecCeec---cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGG-KTHLDLPV---FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g-~~i~Gip~---y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|.|||--|| ..++...|.+.+.. .++|=||.... ....++++ +..|.++..+.++|++|+---...+..+
T Consensus 1 mkVLviGsGgR-EHAiA~~la~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~pL~~Gv 79 (428)
T COG0151 1 MKVLVIGSGGR-EHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAPLVAGV 79 (428)
T ss_pred CeEEEEcCCch-HHHHHHHHhcCCceeEEEEeCCCCccchhhhhccCccccCHHHHHHHHHHcCCCEEEECCcHHHhhhh
Confidence 47899997333 33344555554432 34455665421 12334444 4556666666789999887777788889
Q ss_pred HHHHHHcCCCE
Q psy8894 104 IHEALDAEMPL 114 (306)
Q Consensus 104 ~~e~~~~Gi~~ 114 (306)
++.+-+.|++.
T Consensus 80 vD~l~~~Gi~v 90 (428)
T COG0151 80 VDALRAAGIPV 90 (428)
T ss_pred HHHHHHCCCce
Confidence 99999999983
No 440
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.21 E-value=5.1 Score=41.47 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccC-C------HHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFN-T------VKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~-s------l~el~~~~~iDlavi~vp~~~ 99 (306)
..+|+|+|+ |+.|+...+.|.+.|++++ .+|.+... + ...|.++|. | ++++.- .+.|++|++++.+.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi-~~A~~vv~~~~d~~ 476 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRIT-VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGA-EKAEAIVITCNEPE 476 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCC-ccCCEEEEEeCCHH
Confidence 467999999 9999999999999999876 55554310 0 124555443 2 222221 25899999998865
Q ss_pred HH-HHHHHHHHcCCC
Q psy8894 100 AA-KAIHEALDAEMP 113 (306)
Q Consensus 100 ~~-~~~~e~~~~Gi~ 113 (306)
.. .++..+.+...+
T Consensus 477 ~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 477 DTMKIVELCQQHFPH 491 (601)
T ss_pred HHHHHHHHHHHHCCC
Confidence 55 455555555433
No 441
>PRK12827 short chain dehydrogenase; Provisional
Probab=77.15 E-value=6.5 Score=34.54 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-HHhhhhc-CCCcEE-EEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-VKEARDA-TGAEAT-VIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-l~el~~~-~~iDla-vi~vp~~~~~~~~~e 106 (306)
.+++.|+|+++-.|+...+.|.+.|++++ .++......+ ..... .+++... ..+... .+...++.....+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVI-VLDIHPMRGR----AEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEcCcccccH----HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 47899999999999999999999999976 4432210010 00111 1222211 012222 123445566666766
Q ss_pred HHHc--CCCEEEEecCCCC
Q psy8894 107 ALDA--EMPLIVCITEGIP 123 (306)
Q Consensus 107 ~~~~--Gi~~vvi~t~Gf~ 123 (306)
+.+. ++..++ ...|..
T Consensus 81 ~~~~~~~~d~vi-~~ag~~ 98 (249)
T PRK12827 81 GVEEFGRLDILV-NNAGIA 98 (249)
T ss_pred HHHHhCCCCEEE-ECCCCC
Confidence 6654 577665 466653
No 442
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=77.06 E-value=11 Score=36.26 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------C----------c---eecCe---eccC--
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------G----------K---THLDL---PVFN-- 77 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g----------~---~i~Gi---p~y~-- 77 (306)
||+|-|+ |+.|+...+.+.+. ++++++.-|+... | . .+.|. +++.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 4788888 88888888876543 5667644332110 0 1 11232 2331
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~i 120 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 120 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEe
Confidence 4556553 136999999999999999999999999998775
No 443
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=76.90 E-value=3.3 Score=34.79 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEeeCC-------------CCCCCcEEEEEecCC
Q psy8894 211 FIDCLEVFLKDPETKGIILIGEIGG-------------GPNAKPVVSFIAGIT 250 (306)
Q Consensus 211 ~~d~l~~l~~D~~t~~I~ly~E~~~-------------~~~~KPVvvlk~Grs 250 (306)
+.+.|+.+.+|++++.|++++.+.+ ...+|||+++--|..
T Consensus 16 l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~ 68 (161)
T cd00394 16 LAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQA 68 (161)
T ss_pred HHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 5566778888999999999998765 245699999988764
No 444
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=76.87 E-value=3.7 Score=32.32 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=43.1
Q ss_pred EEEcCCCCCCh---------HHHHHHHHcCCeEEEeeCCCCCCcee------cCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 34 ICQGFTGKQGT---------FHSKQAIEYGTKVVGGVSPGKGGKTH------LDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 34 aVvGasg~~G~---------~~~~~l~~~g~~vv~~VnP~~~g~~i------~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+|.|.+=|++. ..++.|++.|+++. ..||......+ .+++...++++.... .|++|+.++.+
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~-~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~vvl~t~h~ 77 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVS-VYDPYVDEEEIKELGKLEGVEVCDDLEEALKG--ADAVVLATDHD 77 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEE-EE-TTSHHHHHHHHCHHHCEEEESSHHHHHTT--ESEEEESS--G
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEE-EECCccChHHHHhhCCccceEEecCHHHHhcC--CCEEEEEecCH
Confidence 57788766653 23678888999964 78887522222 467788889888765 99999999887
Q ss_pred hHHH
Q psy8894 99 GAAK 102 (306)
Q Consensus 99 ~~~~ 102 (306)
.-.+
T Consensus 78 ~f~~ 81 (106)
T PF03720_consen 78 EFRE 81 (106)
T ss_dssp GGGC
T ss_pred HHhc
Confidence 6654
No 445
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=76.83 E-value=6.8 Score=36.04 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce----------ecCee-ccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT----------HLDLP-VFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~----------i~Gip-~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|.|.|- ...|+...+.|.+.|+ ++..|--.++++. ..|-- -...+.++..++++|++|+.++|-+
T Consensus 1 m~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 1 MKILVLGG-TTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred CEEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 57889997 5567888889999887 4433332221111 11111 2223566666667888888888743
Q ss_pred ---HHHHHHHHHHcCCCEEEE
Q psy8894 100 ---AAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 100 ---~~~~~~e~~~~Gi~~vvi 117 (306)
...+.+.|.+.||+.+=.
T Consensus 79 ~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 79 AEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHHHHhhcCcceEEE
Confidence 345667777788886553
No 446
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.67 E-value=4.9 Score=40.02 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Cc------eecCeeccCC--HHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GK------THLDLPVFNT--VKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~------~i~Gip~y~s--l~el~~~~~iDlavi~vp~~~ 99 (306)
.++|+|+|+ |..|....+.|.+.|+++. .++.+.. .. +-.|+++|.. .. ... ++|++|+...-..
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~--~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGARVT-VVDDGDDERHRALAAILEALGATVRLGPGPT-LPE--DTDLVVTSPGWRP 90 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccC--CCCEEEECCCcCC
Confidence 568999999 8888888888988999865 5654320 00 1136666531 22 222 3788877643222
Q ss_pred HHHHHHHHHHcCC
Q psy8894 100 AAKAIHEALDAEM 112 (306)
Q Consensus 100 ~~~~~~e~~~~Gi 112 (306)
..+.+..+.+.|+
T Consensus 91 ~~~~~~~a~~~gi 103 (480)
T PRK01438 91 DAPLLAAAADAGI 103 (480)
T ss_pred CCHHHHHHHHCCC
Confidence 2233444444443
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=76.63 E-value=13 Score=34.93 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCC--c---ee--------cCeecc-CCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGG--K---TH--------LDLPVF-NTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g--~---~i--------~Gip~y-~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |..|+.....+...|. +++ .+|.+..- . ++ ....++ .+.+++. +.|++|++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~---~aDIVIit 75 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCK---DADIVVIT 75 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhC---CCCEEEEc
Confidence 37999998 9999988888887774 443 66654310 0 11 011122 2344443 38999998
Q ss_pred cCchh----------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPPPG----------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~~~----------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+.... ..+..+++.+.+-++++++-+
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 76531 455666777777777666543
No 448
>PRK05993 short chain dehydrogenase; Provisional
Probab=76.62 E-value=12 Score=33.97 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++..|+...+.+.+.|++++ .++.+. +. ++++.+. .++.. .+.+..+....+++++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi-~~~r~~--~~---------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVF-ATCRKE--ED---------VAALEAE-GLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCH--HH---------HHHHHHC-CceEEEccCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999976 444332 11 2233221 23333 34556677777777775
Q ss_pred Hc---CCCEEEEecCCC
Q psy8894 109 DA---EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~---Gi~~vvi~t~Gf 122 (306)
+. .+..+++ ..|+
T Consensus 71 ~~~~g~id~li~-~Ag~ 86 (277)
T PRK05993 71 ELSGGRLDALFN-NGAY 86 (277)
T ss_pred HHcCCCccEEEE-CCCc
Confidence 52 4776654 5554
No 449
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=76.56 E-value=3.2 Score=42.85 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=47.6
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC-----------------CCCCCcEEEEEecCCCCCCC-------C--ccCCccc
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG-----------------GPNAKPVVSFIAGITAPPGR-------R--MGHAGAI 263 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~-----------------~~~~KPVvvlk~Grs~~~g~-------~--~sHtga~ 263 (306)
++.+.|+...+||++|.|+|.+.+.+ ++.+|||+++--.-+.. +. + +..+|++
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~-~YylAs~AD~I~~~p~G~v 158 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQG-QYYLASFADEIILNPMGSV 158 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccch-hhhhhhhCCEEEECCCceE
Confidence 45555667788999999999998542 35789999985443321 21 1 3555555
Q ss_pred ccCCCC-CHHHHHHHHHHcCCeE
Q psy8894 264 ISGGKG-GAQDKIDALEKAGVIV 285 (306)
Q Consensus 264 a~~~~g-~~~~~~a~~~~aGvi~ 285 (306)
...+.. ...-+..+|++.||-.
T Consensus 159 ~~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 159 DLHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred EeeceecccccHHHHHHHcCCeE
Confidence 322111 2223678999999865
No 450
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=76.54 E-value=5.5 Score=33.29 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC----chhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP----PPGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp----~~~~~~~~~ 105 (306)
|-+|+++.-||.++......+.+.|+.+-..|.-.. +. ++..-+=++-+.++.+.++++++.- ++...+.++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~--dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~ 76 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGN--EA--DVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAAR 76 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT---S--SS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCc--cc--cCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHH
Confidence 356899999999888888888887665433454432 11 2221222333333434777777755 445555555
Q ss_pred HHHHcCCCEEEEecCCCChhHH-------------HHHHHHHHHhcCCeE
Q psy8894 106 EALDAEMPLIVCITEGIPQLDM-------------VKVKHRLIRQSKSRL 142 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~-------------~~~~~~~ar~~gi~i 142 (306)
++..+ |.|+++-.|-++... .+....+.++.|+..
T Consensus 77 ~a~~~--KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~ 124 (138)
T PF13607_consen 77 RAARR--KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVR 124 (138)
T ss_dssp HHCCC--S-EEEEE---------------------HHHHHHHHHHCTEEE
T ss_pred HHhcC--CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceE
Confidence 55555 667778888765531 233445678888633
No 451
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=76.39 E-value=17 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
++|.|+|. |..+..+.+.+++.|++++ .+++
T Consensus 3 k~iLi~g~-g~~a~~i~~aa~~~G~~vv-~~~~ 33 (451)
T PRK08591 3 DKILIANR-GEIALRIIRACKELGIKTV-AVHS 33 (451)
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEE-EEcC
Confidence 78999998 7777778899999999976 4533
No 452
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=76.36 E-value=9.3 Score=39.78 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC------------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP------------ 96 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp------------ 96 (306)
..++|.|.|++|-.|+...+.|.+.|+++..... + +. -...+..+....+||++|=+.-
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~-----~-l~---d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~ 449 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKG-----R-LE---DRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES 449 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeecc-----c-cc---cHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence 4568999999999999999999888888631211 1 11 1122333333335888874421
Q ss_pred ---------chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 ---------PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ---------~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
...+..+++.|.+.|++.++ +++
T Consensus 450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v~-~Ss 481 (668)
T PLN02260 450 HKVETIRANVVGTLTLADVCRENGLLMMN-FAT 481 (668)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHcCCeEEE-Ecc
Confidence 11345578888899998654 544
No 453
>PRK07985 oxidoreductase; Provisional
Probab=76.30 E-value=9 Score=35.44 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc---EEEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE---ATVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD---lavi~vp~~~~~~~~~ 105 (306)
+.+++.|.|+++..|+...+.|.+.|++++ .++... .. .. -..+.+..++.+.+ +..+....+.....++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi-~~~~~~--~~-~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVA-ISYLPV--EE-ED---AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEE-EecCCc--ch-hh---HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999976 344322 11 00 11122222111112 2234566777788888
Q ss_pred HHHHc--CCCEEEEecCCC
Q psy8894 106 EALDA--EMPLIVCITEGI 122 (306)
Q Consensus 106 e~~~~--Gi~~vvi~t~Gf 122 (306)
++.+. ++..+++ ..|+
T Consensus 121 ~~~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 121 EAHKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87663 4776664 5554
No 454
>PLN02700 homoserine dehydrogenase family protein
Probab=76.26 E-value=11 Score=37.00 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcCCCE
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAEMPL 114 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~Gi~~ 114 (306)
..+++|+|+|.....+..++++++|++.
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hV 136 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCI 136 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeE
Confidence 3699999999989899999999999994
No 455
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=76.08 E-value=4.3 Score=32.61 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=48.0
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE-ccCCCceecCccccccCCCCCCCCCCC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI-GPNCPGIIAPEQCKIGIMPGHIHQRGC 170 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~~~~~~~~~~~~~~G~ 170 (306)
++.+.-.++-++++.+.|+|.||+.-+--.+.+ ..+.+++.|++.||..+ =|=..+-++.... ..+.......+++
T Consensus 10 ~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v-~~f~~~l~~~~~P 88 (110)
T PF04273_consen 10 SVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDV-EAFADALESLPKP 88 (110)
T ss_dssp EEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHH-HHHHHHHHTTTTS
T ss_pred EECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHH-HHHHHHHHhCCCC
Confidence 444566778889999999999999764321111 12223457899998665 3433333333211 0010001134688
Q ss_pred EEEEecChhhHHHHHHHHH
Q psy8894 171 VGVVSRSGTLTYEAVHQTT 189 (306)
Q Consensus 171 va~vSqSG~~~~~~~~~~~ 189 (306)
|=+.+.||.=+..+..+++
T Consensus 89 vl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 89 VLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp EEEE-SCSHHHHHHHHHHH
T ss_pred EEEECCCChhHHHHHHHHh
Confidence 9999999998887765443
No 456
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.08 E-value=8.3 Score=39.39 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeecc-CC------HHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVF-NT------VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y-~s------l~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|.|+|+ |+.|+...+.+.+.|.+++ .||++... + ...|.+++ .| ++++.- .+.|.++++++.+..
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~~ 494 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSRTRVDELRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGYE 494 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChHH
Confidence 67999999 9999999999999999876 67765410 0 11244332 22 333322 258988888877554
Q ss_pred H
Q psy8894 101 A 101 (306)
Q Consensus 101 ~ 101 (306)
.
T Consensus 495 ~ 495 (558)
T PRK10669 495 A 495 (558)
T ss_pred H
Confidence 4
No 457
>PRK06153 hypothetical protein; Provisional
Probab=76.07 E-value=21 Score=35.06 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+..+|+|||+ |-.|..+...|.+.|..-+..||+..
T Consensus 175 ~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 175 EGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCE
Confidence 3579999999 88999999999999987555888764
No 458
>PRK05586 biotin carboxylase; Validated
Probab=75.91 E-value=15 Score=36.40 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-CCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----h--hHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-GKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----P--GAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~--~~~~ 102 (306)
-++|.|+|. |-.+....+.+++.|+++++...+ .. .. |... + .|-.+...|. . ....
T Consensus 2 ~kkvli~g~-G~~~~~~~~aa~~lG~~~v~v~~~~d~--~a----~~~~-~--------aD~~~~~~~~~~~~~y~~~~~ 65 (447)
T PRK05586 2 FKKILIANR-GEIAVRIIRACREMGIETVAVYSEADK--DA----LHVQ-L--------ADEAVCIGPASSKDSYLNIQN 65 (447)
T ss_pred cceEEEECC-cHHHHHHHHHHHHcCCcEEEEcChHhc--cC----cchh-h--------CCEEEEeCCCChhhcccCHHH
Confidence 368999998 888888889999999997644333 21 00 1100 0 2333222221 0 1245
Q ss_pred HHHHHHHcCCCEEEEecCCCC-hhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 103 AIHEALDAEMPLIVCITEGIP-QLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~-e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
+++.|.+.++..++ -..||- |.. . ..+++++.|+.++||+.--+
T Consensus 66 i~~~~~~~~~d~i~-p~~~~~~E~~--~-~a~~~~~~gi~~~g~s~~~~ 110 (447)
T PRK05586 66 IISATVLTGAQAIH-PGFGFLSENS--K-FAKMCKECNIVFIGPDSETI 110 (447)
T ss_pred HHHHHHHcCCCEEE-cCccccccCH--H-HHHHHHHCCCcEECcCHHHH
Confidence 67778888888755 233442 221 2 22456778888888765433
No 459
>PRK08264 short chain dehydrogenase; Validated
Probab=75.64 E-value=15 Score=32.08 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSP 63 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP 63 (306)
+.+++.|+|+++..|+...+.|.+.|. +++ .+..
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~-~~~r 39 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVY-AAAR 39 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEE-EEec
Confidence 457899999999999999999999998 654 4443
No 460
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.45 E-value=49 Score=32.72 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCceecCe-eccCC-HHhhhhc-----------------CCCcE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKTHLDL-PVFNT-VKEARDA-----------------TGAEA 90 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gi-p~y~s-l~el~~~-----------------~~iDl 90 (306)
++|.|+|. |-.|-...-.|.+.|.++++. +|++....--.|. |+|.- |+++..+ .+-|+
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Q ss_pred EEEecCchhH----------HHHHHHHHHcCCC-EEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccc---
Q psy8894 91 TVIYVPPPGA----------AKAIHEALDAEMP-LIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQC--- 156 (306)
Q Consensus 91 avi~vp~~~~----------~~~~~e~~~~Gi~-~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~--- 156 (306)
.+|+||...- ..++++..+.--+ .+++.=+-.+.-..+++.+.+.....-+ -.+++....+
T Consensus 80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-----~f~v~~NPEFLRE 154 (414)
T COG1004 80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-----DFEVASNPEFLRE 154 (414)
T ss_pred EEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-----CceEecChHHhcC
Q ss_pred cccCCCCCCCCCCCEEEEecC-hhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhc
Q psy8894 157 KIGIMPGHIHQRGCVGVVSRS-GTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLK 220 (306)
Q Consensus 157 ~~~~~~~~~~~~G~va~vSqS-G~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~ 220 (306)
..+......|..==||.-|.. +.+..+++......+..+-. .|+..+|++.|+++
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~---------t~~~~AE~IKyaaN 210 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILF---------TDLREAELIKYAAN 210 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEE---------ecchHHHHHHHHHH
No 461
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=75.42 E-value=4.9 Score=37.26 Aligned_cols=108 Identities=8% Similarity=0.006 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----ecC---eeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----HLD---LPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----i~G---ip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.+++.|+|+ |..|+.+...|.+.|+.-+..+|.+... ++ ... ++...++.+... +.|++|-++|....
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~--~~DivInaTp~g~~ 198 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELA--DFDLIINATSAGMS 198 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccc--cCCEEEECCcCCCC
Confidence 3578999998 9999999999999996545578876411 01 111 111001223333 38999999987653
Q ss_pred H-----HHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 101 A-----KAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 101 ~-----~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
. +.-.+++..+ ..++=+.-.-.++ .++ +.|++.|..++.
T Consensus 199 ~~~~~~~~~~~~l~~~-~~v~DivY~P~~T---~ll-~~A~~~G~~~~~ 242 (278)
T PRK00258 199 GELPLPPLPLSLLRPG-TIVYDMIYGPLPT---PFL-AWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCHHHcCCC-CEEEEeecCCCCC---HHH-HHHHHCcCeecC
Confidence 2 1222344432 2111111111122 233 357888887763
No 462
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=75.07 E-value=58 Score=28.61 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=54.7
Q ss_pred EEcCCCCCChH-HHHHHHHcCCeEEEee--CCCCCCceecCeeccC--CHH---hhhhcCCCcEEEEecCc------hhH
Q psy8894 35 CQGFTGKQGTF-HSKQAIEYGTKVVGGV--SPGKGGKTHLDLPVFN--TVK---EARDATGAEATVIYVPP------PGA 100 (306)
Q Consensus 35 VvGasg~~G~~-~~~~l~~~g~~vv~~V--nP~~~g~~i~Gip~y~--sl~---el~~~~~iDlavi~vp~------~~~ 100 (306)
++..||-..+. ....+.+.|+++++.. .|... .. .+|. .++ .+.+..++.+.++.++. +..
T Consensus 3 ~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~-~~----~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l 77 (194)
T cd01994 3 VALISGGKDSCYALYRALEEGHEVVALLNLTPEEG-SS----MMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDL 77 (194)
T ss_pred EEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCC-Cc----ccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHH
Confidence 46677655443 4556667799877652 23321 11 1122 222 22233356766665443 223
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
.+.++++.+.|+..++ +-.-+++.+ .+..+++|++.|+..+-|=
T Consensus 78 ~~~l~~~~~~g~~~vv-~G~i~sd~~-~~~~e~~~~~~gl~~~~PL 121 (194)
T cd01994 78 KELLRKLKEEGVDAVV-FGAILSEYQ-RTRVERVCERLGLEPLAPL 121 (194)
T ss_pred HHHHHHHHHcCCCEEE-ECccccHHH-HHHHHHHHHHcCCEEEecc
Confidence 3445555555788755 333344443 3334468889888777664
No 463
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=74.83 E-value=14 Score=36.83 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCC--------------Cc---e----------ecC--eeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKG--------------GK---T----------HLD--LPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~--------------g~---~----------i~G--ip~y~- 77 (306)
.+|+|-|+ |+.|+...+.+.+ .++++++ ||-... |. + +.| ++++.
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievVa-INd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVV-VNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEEE-ECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 68999999 9999999987653 3578874 442110 10 1 112 22332
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEec
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
+.++++= +.++|+++.|+......+.+...++.|.+.|++ |
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i-S 196 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-T 196 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE-C
Confidence 2335542 236999999999999999999999999998775 5
No 464
>KOG2250|consensus
Probab=74.82 E-value=35 Score=34.44 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=65.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCC-c----------eecCeeccCCH----------H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGG-K----------THLDLPVFNTV----------K 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g-~----------~i~Gip~y~sl----------~ 80 (306)
+-++++|-|. |+.|....+.+.+.|-++++. +||...- . .+.+++-+... .
T Consensus 250 kgkr~~i~G~-Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~ 328 (514)
T KOG2250|consen 250 KGKRVVIQGF-GNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPW 328 (514)
T ss_pred CceEEEEeCC-CchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCccccccCcch
Confidence 3578888887 999988888999988887764 6676321 0 12233322221 1
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHH
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVK 131 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~ 131 (306)
-+.+ ++|+++=| +-.+...+.+.+.++.|+|.|+=.+-+++..+..+.+
T Consensus 329 ~~v~--~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vl 378 (514)
T KOG2250|consen 329 TLVE--KCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVL 378 (514)
T ss_pred hhHh--hCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHH
Confidence 1222 48998866 4446668889999999999877666677666655543
No 465
>PRK06398 aldose dehydrogenase; Validated
Probab=74.82 E-value=15 Score=33.00 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++..|+...+.|.+.|++++ .++.+. .... . +. +..+...++.+.++++++.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi-~~~r~~--~~~~-------------~--~~~~~~D~~~~~~i~~~~~~~~ 67 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVI-NFDIKE--PSYN-------------D--VDYFKVDVSNKEQVIKGIDYVI 67 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeCCc--cccC-------------c--eEEEEccCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999976 344332 1100 0 11 2224455667777777776
Q ss_pred Hc--CCCEEEEecCCC
Q psy8894 109 DA--EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf 122 (306)
+. ++..+++ ..|+
T Consensus 68 ~~~~~id~li~-~Ag~ 82 (258)
T PRK06398 68 SKYGRIDILVN-NAGI 82 (258)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 54 5777664 5554
No 466
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=74.81 E-value=14 Score=31.80 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=53.1
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+..-.+..+|.++|.+........+++++. |.++++..||-. +.+.. ..-++++.+ .+||++++......-+
T Consensus 40 ~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~-~~~~~----~~i~~~I~~-~~pdiv~vglG~PkQE 113 (171)
T cd06533 40 ELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYF-GPEEE----EEIIERINA-SGADILFVGLGAPKQE 113 (171)
T ss_pred HHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCC-ChhhH----HHHHHHHHH-cCCCEEEEECCCCHHH
Confidence 333445789999997544444445566664 777776566543 11111 012444444 4699999998888878
Q ss_pred HHHHHHHHcCCCEEE
Q psy8894 102 KAIHEALDAEMPLIV 116 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vv 116 (306)
..+.+..++.-..++
T Consensus 114 ~~~~~~~~~l~~~v~ 128 (171)
T cd06533 114 LWIARHKDRLPVPVA 128 (171)
T ss_pred HHHHHHHHHCCCCEE
Confidence 888777776534444
No 467
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=74.69 E-value=48 Score=28.71 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=31.4
Q ss_pred CCEEEEecChh--h----HHHHHHHHHhCCCce--EEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe
Q psy8894 169 GCVGVVSRSGT--L----TYEAVHQTTQVGLGQ--TLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGE 232 (306)
Q Consensus 169 G~va~vSqSG~--~----~~~~~~~~~~~g~g~--s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E 232 (306)
++|++++.+.. . ...+...+.+.++-+ ...+..... .+.....+.+++.+.|+..+|+..-.
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~i~~~~~ 186 (264)
T cd06267 117 RRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFS--EESGYEAARELLASGERPTAIFAAND 186 (264)
T ss_pred ceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccc--hhhHHHHHHHHHhcCCCCcEEEEcCc
Confidence 45666654433 1 122334455555322 223333322 23334455578888888888877633
No 468
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=74.59 E-value=53 Score=27.94 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=38.0
Q ss_pred CCCEEEEecCh-hhH----HHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe
Q psy8894 168 RGCVGVVSRSG-TLT----YEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGE 232 (306)
Q Consensus 168 ~G~va~vSqSG-~~~----~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E 232 (306)
..+|+++.... ... ..+.+.+.++|+-+......... .+-+...+..++.+.|+..+|++...
T Consensus 124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~i~~~~~ 191 (269)
T cd01391 124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLD--TEKGFQALLQLLKAAPKPDAIFACND 191 (269)
T ss_pred CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCC--ccccHHHHHHHHhcCCCCCEEEEcCc
Confidence 55677776555 222 22334445566444444443333 34577888889988888888888765
No 469
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=74.53 E-value=87 Score=30.38 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=113.1
Q ss_pred ccCCHHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcC--CeEEccCCCcee
Q psy8894 75 VFNTVKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSK--SRLIGPNCPGII 151 (306)
Q Consensus 75 ~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~g--i~iiGPNc~Gi~ 151 (306)
.|..+..+.++ ....-+|-++....++.+.-.|...|+|+++++..+-+..-. +..|.+| +.+.|.|.-=-.
T Consensus 60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv-----~a~r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKV-----DATRGYGAEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHH-----HHHHhcCCEEEEECCCHHHHH
Confidence 55556777532 224445455556777777777878899999987766553321 1245555 455555531000
Q ss_pred cCcc-----ccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhc-CCCcc
Q psy8894 152 APEQ-----CKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLK-DPETK 225 (306)
Q Consensus 152 ~~~~-----~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~-D~~t~ 225 (306)
.... ....+.++.. +--++.-=|+++.+++..+... -=.-+|++|.-.. .+-+..|+.. .|+||
T Consensus 135 ~~a~~~a~~~G~~~i~pfD----~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGGL----isGia~~~k~~~p~~~ 204 (347)
T COG1171 135 AAAEELAEEEGLTFVPPFD----DPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGGL----ISGIATALKALSPEIK 204 (347)
T ss_pred HHHHHHHHHcCCEEeCCCC----CcceeecccHHHHHHHHhcccc--CCEEEEecCccHH----HHHHHHHHHHhCCCCe
Confidence 0000 0011222211 2346677799999998765543 2345788887621 2344455544 67899
Q ss_pred EEEEEEeeCC-----CCCCCcEEEEE-ecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHc-CCeEeCCHhHHHHHHHH
Q psy8894 226 GIILIGEIGG-----GPNAKPVVSFI-AGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKA-GVIVTRSPAQMGNELLK 298 (306)
Q Consensus 226 ~I~ly~E~~~-----~~~~KPVvvlk-~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~a-Gvi~~~~~~el~~~~~~ 298 (306)
+|.+--|... ...+++++.+. .++=. .|.+..+-|.+ .| .++++. .-++.=|-+|+.++++.
T Consensus 205 vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tia-DG~av~~~g~~---------tf-~i~~~~vd~~v~V~e~ei~~am~~ 273 (347)
T COG1171 205 VIGVEPEGAPSMYASLKAGKIVVVLPDVGTIA-DGLAVKRPGDL---------TF-EILRELVDDIVLVDEDEICAAMRD 273 (347)
T ss_pred EEEEeeCCChHHHHHHHcCCceeecCCCCccc-cccccCCCCHH---------HH-HHHHHcCCcEEEECHHHHHHHHHH
Confidence 9988877665 34576777776 44433 35443333332 23 333333 32444456778888777
Q ss_pred HHHhh
Q psy8894 299 EMKRL 303 (306)
Q Consensus 299 ~~~~~ 303 (306)
++++.
T Consensus 274 l~~~~ 278 (347)
T COG1171 274 LFERT 278 (347)
T ss_pred HHhcC
Confidence 77764
No 470
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.32 E-value=8.3 Score=37.77 Aligned_cols=70 Identities=24% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCCCh---------HHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGT---------FHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~---------~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.++|+|.|.+=|++. .+.+.|.+.|.++. .-||..........+...++++..+. .|++|+.+..+.
T Consensus 312 ~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~-~~DP~~~~~~~~~~~~~~~~~~~~~~--ad~~v~~t~~~~ 388 (411)
T TIGR03026 312 KGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVK-AYDPLVPEEEVKGLPLIDDLEEALKG--ADALVILTDHDE 388 (411)
T ss_pred cCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEE-EECCCCChhhhhhcccCCCHHHHHhC--CCEEEEecCCHH
Confidence 5689999999877764 23577888899965 78887422222233334677776654 899999987765
Q ss_pred HH
Q psy8894 100 AA 101 (306)
Q Consensus 100 ~~ 101 (306)
-.
T Consensus 389 ~~ 390 (411)
T TIGR03026 389 FK 390 (411)
T ss_pred Hh
Confidence 43
No 471
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.26 E-value=7.8 Score=34.42 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE-EEEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA-TVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl-avi~vp~~~~~~~~~e~ 107 (306)
+.+++.|.|+++..|+...+.|.+.|++++ .++.+. +... +....+.+.... +.. ..+....+.....++++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~-~~~r~~--~~~~--~~~~~~~~~~~~--~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVV-VADRDA--AGGE--ETVALIREAGGE--ALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeCCH--HHHH--HHHHHHHhcCCc--eEEEEcCCCCHHHHHHHHHHH
Confidence 357899999999999999999999999865 555442 1111 111111111111 222 22345556666677766
Q ss_pred HHc--CCCEEEEecCCC
Q psy8894 108 LDA--EMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~--Gi~~vvi~t~Gf 122 (306)
.+. .+..++. ..|+
T Consensus 79 ~~~~g~id~li~-~ag~ 94 (253)
T PRK06172 79 IAAYGRLDYAFN-NAGI 94 (253)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 553 4776664 5554
No 472
>PRK10949 protease 4; Provisional
Probab=74.26 E-value=3.6 Score=42.85 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=64.2
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG----------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~----------- 235 (306)
..+.||+|.-+|.+... ...-| .+|. -++.+.|+...+||++|+|+|.+.+.+
T Consensus 324 ~~~~Iavi~~~G~I~~g------~~~~g-----~~~~-----~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~ 387 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG------EETPG-----NVGG-----DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 387 (618)
T ss_pred CCCeEEEEEEEEEEcCC------CCcCC-----CcCH-----HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence 35679999999998531 01011 1222 246788899999999999999999986
Q ss_pred -----CCCCCcEEEEEecCCCCCCC-------C-----ccCCcccccCCCCCHHHHHHHHHHcCCe
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGR-------R-----MGHAGAIISGGKGGAQDKIDALEKAGVI 284 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~-------~-----~sHtga~a~~~~g~~~~~~a~~~~aGvi 284 (306)
++.+||||+...+-....|. + .+=|||+- --+....+..++++.||-
T Consensus 388 ~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIG--V~~~~~~~~~ll~klGV~ 451 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIG--IFGVINTVENSLDSIGVH 451 (618)
T ss_pred HHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCc--EEEEccCHHHHHHhcCCc
Confidence 24679999987665432121 1 13345531 001233456789999974
No 473
>PRK06196 oxidoreductase; Provisional
Probab=74.10 E-value=9.5 Score=35.51 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE-EEEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA-TVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl-avi~vp~~~~~~~~~e~ 107 (306)
+.++|.|.|+++.+|+...+.|.+.|++++ .+..+. +.. -...+++.+ +.. ..+....+.+...++++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv-~~~R~~--~~~-----~~~~~~l~~---v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVI-VPARRP--DVA-----REALAGIDG---VEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCCH--HHH-----HHHHHHhhh---CeEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999976 344332 110 000122211 222 22445566677777777
Q ss_pred HH--cCCCEEEEecCCC
Q psy8894 108 LD--AEMPLIVCITEGI 122 (306)
Q Consensus 108 ~~--~Gi~~vvi~t~Gf 122 (306)
.+ .++..+++ ..|+
T Consensus 94 ~~~~~~iD~li~-nAg~ 109 (315)
T PRK06196 94 LDSGRRIDILIN-NAGV 109 (315)
T ss_pred HhcCCCCCEEEE-CCCC
Confidence 66 35776664 5454
No 474
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=74.10 E-value=11 Score=41.65 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCcEEEEEcCCC-CCChH---------HHHHHHHcCCeEEEeeCCCC--CCce--ecC----eecc-CCHHhhhhcCCC
Q psy8894 28 TSKSKVICQGFTG-KQGTF---------HSKQAIEYGTKVVGGVSPGK--GGKT--HLD----LPVF-NTVKEARDATGA 88 (306)
Q Consensus 28 ~~~~~VaVvGasg-~~G~~---------~~~~l~~~g~~vv~~VnP~~--~g~~--i~G----ip~y-~sl~el~~~~~i 88 (306)
...++|.|+|+.. ++|+- ..+.+++.|++++ .||.+. .... ... .|.+ ..+-++.+.++|
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~i 630 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-MINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKP 630 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-EEecCCccccccccccceEEEecCCHHHHHHHHhhcCC
Confidence 4567999999843 35652 2678888999976 554432 1111 111 1211 123344444568
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCE
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPL 114 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~ 114 (306)
|.++..........+.+.+.+.|++.
T Consensus 631 dgVI~~~gg~~~~~la~~le~~Gi~i 656 (1050)
T TIGR01369 631 EGVIVQFGGQTPLNLAKALEEAGVPI 656 (1050)
T ss_pred CEEEEccCcHhHHHHHHHHHHCCCcE
Confidence 88876666666666677777778773
No 475
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=74.06 E-value=33 Score=31.55 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCCChHHHH----HHHHcCCeEEEeeCCCCCCceecCeeccC-CHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSK----QAIEYGTKVVGGVSPGKGGKTHLDLPVFN-TVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~----~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.++|+++.....-|+...+ .+.+.|.+++....... +-.=|. -+..+... ++|++++..........+
T Consensus 135 ~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~------~~~d~~~~l~~i~~~-~~~~vi~~~~~~~~~~~~ 207 (334)
T cd06342 135 AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTD------GATDFSAILTKIKAA-NPDAVFFGGYYPEAGPLV 207 (334)
T ss_pred CCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCC------CCccHHHHHHHHHhc-CCCEEEEcCcchhHHHHH
Confidence 5789999886655655433 44546888764322111 001122 25555443 699999888888888899
Q ss_pred HHHHHcCCCEEEEecCCCChhHH
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDM 127 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~ 127 (306)
+++.+.|.+..++.+.+..++..
T Consensus 208 ~~~~~~g~~~~~~~~~~~~~~~~ 230 (334)
T cd06342 208 RQMRQLGLKAPFMGGDGLCDPEF 230 (334)
T ss_pred HHHHHcCCCCcEEecCccCCHHH
Confidence 99999999877765555544443
No 476
>PRK05442 malate dehydrogenase; Provisional
Probab=73.96 E-value=26 Score=33.52 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=20.1
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIE 52 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~ 52 (306)
+.+|.+|+|+|++|+.|....-.+..
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHh
Confidence 35799999999999999876544443
No 477
>PRK06841 short chain dehydrogenase; Provisional
Probab=73.87 E-value=13 Score=32.89 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~ 107 (306)
+.+++.|.|+++..|....+.|.+.|++++ .++.+. .. .....++... .+. +..+...++.....++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~--~~------~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSE--DV------AEVAAQLLGG-NAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH------HHHHHHhhCC-ceEEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999999999976 455432 10 0001122111 111 122445566677777776
Q ss_pred HHc--CCCEEEEecCCC
Q psy8894 108 LDA--EMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~--Gi~~vvi~t~Gf 122 (306)
.+. ++..++ ...|.
T Consensus 84 ~~~~~~~d~vi-~~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILV-NSAGV 99 (255)
T ss_pred HHHhCCCCEEE-ECCCC
Confidence 653 577655 45554
No 478
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=73.72 E-value=8.7 Score=38.67 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+.++++|+|+ |.+|+.....+.+.|++++ .+|.+... +++ .+...+ +++++..-.+.|++|.++|.....
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L~~~G~~V~-i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~--- 404 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTLARAGAELL-IFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTI--- 404 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcc---
Confidence 3578999998 8999999999999999754 56654310 111 111122 133332212489999999976532
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+... +.++=+...-.++. ++ +.|++.|.+++
T Consensus 405 ~~~l~---~~v~D~~Y~P~~T~---ll-~~A~~~G~~~~ 436 (477)
T PRK09310 405 PKAFP---PCVVDINTLPKHSP---YT-QYARSQGSSII 436 (477)
T ss_pred hhHHh---hhEEeccCCCCCCH---HH-HHHHHCcCEEE
Confidence 22222 12222233322332 32 35788898776
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=73.57 E-value=14 Score=32.96 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCC-cEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGA-EATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~i-Dlavi~vp~~~~~~~~~e~~ 108 (306)
.++|.|+|+++..|+...+.+.+.|++++ .++.+. .. ++++.+.... -+..+....+.....++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~-~~~r~~--~~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVV-VGDIDP--EA---------GKAAADEVGGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeCCH--HH---------HHHHHHHcCCcEEEeeCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999975 443321 10 1111111001 12335566667777777765
Q ss_pred Hc--CCCEEEEecCCC
Q psy8894 109 DA--EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf 122 (306)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 53 5777664 5554
No 480
>PRK07877 hypothetical protein; Provisional
Probab=73.26 E-value=15 Score=39.09 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=66.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCce-ecCeeccCCHHhh-----------hhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKT-HLDLPVFNTVKEA-----------RDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~-i~Gip~y~sl~el-----------~~~~~iDlavi~vp 96 (306)
..+|+|+|+ | .|+.+..+|...|. .-+..||....... ++-+ .| +.+++ ..+.++++-|.+.+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~-~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PA-GVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cC-ChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 7 89999999998884 43346776542111 1111 12 12221 12234677777777
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCcee
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGII 151 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~ 151 (306)
.....+.+++.++ ++..|+-.+..| +..-++.+.|+++++.+| |-..-|.+
T Consensus 183 ~~i~~~n~~~~l~-~~DlVvD~~D~~---~~R~~ln~~a~~~~iP~i~~~~~~g~~ 234 (722)
T PRK07877 183 DGLTEDNVDAFLD-GLDVVVEECDSL---DVKVLLREAARARRIPVLMATSDRGLL 234 (722)
T ss_pred ccCCHHHHHHHhc-CCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 7666777777664 577766555554 223344457888887544 33333444
No 481
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.21 E-value=32 Score=31.87 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEEEcCCCCCChHH--HHHHHHcCCeEEEe----eCCCCCCceec---------Ce---eccCCHHhhhhcCCCcEEEEe
Q psy8894 33 VICQGFTGKQGTFH--SKQAIEYGTKVVGG----VSPGKGGKTHL---------DL---PVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 33 VaVvGasg~~G~~~--~~~l~~~g~~vv~~----VnP~~~g~~i~---------Gi---p~y~sl~el~~~~~iDlavi~ 94 (306)
....|. .+..... .+.+.+.|..++-. -||-..|..|. |. .++.-+.++.++.++-+++..
T Consensus 20 yi~aG~-P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~ 98 (263)
T CHL00200 20 FITAGD-PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFT 98 (263)
T ss_pred EEeCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Q ss_pred ----cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC---eEEccCC
Q psy8894 95 ----VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS---RLIGPNC 147 (306)
Q Consensus 95 ----vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi---~iiGPNc 147 (306)
+-.....+.+++|.+.|+..+++ +..+.++..+... .++++|+ .++-|++
T Consensus 99 Y~N~i~~~G~e~F~~~~~~aGvdgvii--pDLP~ee~~~~~~-~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLII--PDLPYEESDYLIS-VCNLYNIELILLIAPTS 155 (263)
T ss_pred cccHHHHhCHHHHHHHHHHcCCeEEEe--cCCCHHHHHHHHH-HHHHcCCCEEEEECCCC
No 482
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.94 E-value=18 Score=32.41 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEA 107 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~ 107 (306)
+.+++.|.|+++-+|+...+.|.+.|++++ .++.+. +... ...++++.. +... .+....+.....++++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r~~--~~~~-----~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVA-VLERSA--EKLA-----SLRQRFGDH--VLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCCH--HHHH-----HHHHHhCCc--ceEEEccCCCHHHHHHHHHHH
Confidence 357899999999999999999999999976 444432 1110 001111111 2221 2344556666777777
Q ss_pred HHc--CCCEEEEecCCC
Q psy8894 108 LDA--EMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~--Gi~~vvi~t~Gf 122 (306)
.+. .+..++. ..|+
T Consensus 75 ~~~~g~id~li~-~ag~ 90 (263)
T PRK06200 75 VDAFGKLDCFVG-NAGI 90 (263)
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 654 4776654 5665
No 483
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=72.82 E-value=13 Score=41.15 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCC-CCChHH---------HHHHHHcCCeEEEeeCCCC--CCce--ecC----eecc-CCHHhhhhcCCCc
Q psy8894 29 SKSKVICQGFTG-KQGTFH---------SKQAIEYGTKVVGGVSPGK--GGKT--HLD----LPVF-NTVKEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg-~~G~~~---------~~~l~~~g~~vv~~VnP~~--~g~~--i~G----ip~y-~sl~el~~~~~iD 89 (306)
..++|.|+|+.. +.|.-. .+.+++.|++++ .+|.+. .... ..+ .|.+ .++-++.++++||
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~d 632 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-MINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIK 632 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-EEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCC
Confidence 468999999843 344322 678888999976 555443 1111 111 1222 1244444455789
Q ss_pred EEEEecCchhHHHHHHHHHHcCCC
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~ 113 (306)
.++..........+.+.+.+.|++
T Consensus 633 gVI~~~g~~~~~~la~~le~~Gi~ 656 (1068)
T PRK12815 633 GVIVQFGGQTAINLAKGLEEAGLT 656 (1068)
T ss_pred EEEEecCcHHHHHHHHHHHHCCCe
Confidence 887766556666667777778877
No 484
>COG2403 Predicted GTPase [General function prediction only]
Probab=72.68 E-value=75 Score=31.35 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=54.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe-----------eCC-CCCC-ceecCeeccCC-----HHhhhhcC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG-----------VSP-GKGG-KTHLDLPVFNT-----VKEARDAT 86 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~-----------VnP-~~~g-~~i~Gip~y~s-----l~el~~~~ 86 (306)
.+...++|++.|+-++-=..-...++.. -|++++. +.| ...| ....|+|+|+. |+.+.+++
T Consensus 2 ~m~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~ 81 (449)
T COG2403 2 AMKARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREK 81 (449)
T ss_pred CCCCceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHHc
Confidence 3556789999999544221112233332 3443322 222 1111 13578999875 66677777
Q ss_pred CCcEEEEe---cCchhHHHHHHHHHHcCCCEEEEec
Q psy8894 87 GAEATVIY---VPPPGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 87 ~iDlavi~---vp~~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
++|.+|+. +.++....++-..+..|... |.+.
T Consensus 82 ~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f-~~~g 116 (449)
T COG2403 82 DVDIVVLAYSDVSYEHVFRIASRVLSAGADF-KELG 116 (449)
T ss_pred CCCeEEEEcccCCHHHHHHHHHHHHhCCcee-EEeC
Confidence 89977765 55677777777778888764 4444
No 485
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=72.54 E-value=8.6 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
+.++++|+|++|..|+...+.+.+.|.+++ .++++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 357899999999999999999888888764 56654
No 486
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=72.52 E-value=33 Score=38.06 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCCcEEEEEcCCCC-CCh---------HHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGK-QGT---------FHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~-~G~---------~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+..++|.|+|.... .|+ .+.+.+++.|++++ .+|++. ..+. .+. ++ .|-..+ .|.
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi-~v~~np--~~~~-----~~~-~~-----aD~~y~-~p~ 68 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVI-LVNSNP--ATIM-----TDP-EM-----ADKVYI-EPL 68 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEE-EEecch--hhcc-----CCh-hc-----CCEEEE-CCC
Confidence 34689999998432 354 45788899999987 677664 2211 100 01 232222 222
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCCh-hHH-HHH-HHHHHHhcCCeEEccCCCceec
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQ-LDM-VKV-KHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e-~~~-~~~-~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
....+.+-+.+.++.+++. +.|... ... .++ .+.+++++|++++||+--.+-.
T Consensus 69 -~~~~v~~ii~~e~~DaIlp-~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~ 124 (1050)
T TIGR01369 69 -TPEAVEKIIEKERPDAILP-TFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKK 124 (1050)
T ss_pred -CHHHHHHHHHHhCCCEEEE-CCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHH
Confidence 2233333344557887763 434321 111 111 1235678899999987644443
No 487
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.44 E-value=14 Score=33.06 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=50.9
Q ss_pred CCcEEEEEcCC--CCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFT--GKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGas--g~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~ 105 (306)
+.+.+.|.|++ +.+|+...+.|.+.|++++ .+..+. .. -..++++... .+. +..+.+.++.+.+.++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi-~~~r~~---~~-----~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVI-YTYQND---RM-----KKSLQKLVDE-EDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEE-EecCch---HH-----HHHHHhhccC-ceeEEeCCCCCHHHHHHHHH
Confidence 35789999998 6899999999999999976 333321 10 0112222111 111 2234566777888888
Q ss_pred HHHHc--CCCEEEEecCCC
Q psy8894 106 EALDA--EMPLIVCITEGI 122 (306)
Q Consensus 106 e~~~~--Gi~~vvi~t~Gf 122 (306)
++.+. .+..++ ...|+
T Consensus 76 ~~~~~~g~iD~lv-~nAg~ 93 (252)
T PRK06079 76 TIKERVGKIDGIV-HAIAY 93 (252)
T ss_pred HHHHHhCCCCEEE-Ecccc
Confidence 87763 377655 45565
No 488
>KOG2653|consensus
Probab=72.43 E-value=14 Score=35.96 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC------ceecCeeccC--CHHhhhhc-CCCcEEEEecCc-hh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG------KTHLDLPVFN--TVKEARDA-TGAEATVIYVPP-PG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g------~~i~Gip~y~--sl~el~~~-~~iDlavi~vp~-~~ 99 (306)
+..|+++|. .-||+...-|+.+.||.+. ..|....- .+-.|.+++. |++|+... ..|-.+++.+-+ ..
T Consensus 6 ~~digLiGL-aVMGqnLiLN~~d~Gf~v~-~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p 83 (487)
T KOG2653|consen 6 KADIGLIGL-AVMGQNLILNIADKGFTVC-AYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP 83 (487)
T ss_pred ccchhhhhH-hhhhhhhhhcccccCceEE-EeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc
Confidence 567999998 8999988888889999874 66654310 1223666664 78888653 248888876655 44
Q ss_pred HHHHHHHHHHc-CCCEEEEecCCCChh-HHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 100 AAKAIHEALDA-EMPLIVCITEGIPQL-DMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi~~vvi~t~Gf~e~-~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
+...++++... ...-++ +-.|=++- +..++.+++ .+.|+..+|..--|=
T Consensus 84 VD~~I~~L~p~LekgDiI-IDGGNs~y~dT~RR~~el-~k~GilfvG~GVSGG 134 (487)
T KOG2653|consen 84 VDQFIEELVPYLEKGDII-IDGGNSEYQDTERRCREL-AKKGILFVGSGVSGG 134 (487)
T ss_pred HHHHHHHHHhhcCCCCEE-EeCCcccCcchHHHHHHH-HhcCcEEEecCccCc
Confidence 55566666664 344444 46665432 344444444 577888888765443
No 489
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=72.40 E-value=27 Score=35.33 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~ 60 (306)
++|.|+|. |.-..+....+++. +++++..
T Consensus 1 mkVLviG~-Ggrehal~~~l~~s~~g~~v~~~ 31 (486)
T PRK05784 1 MKVLLVGD-GAREHALAEALEKSTKGYKVYAL 31 (486)
T ss_pred CEEEEECC-chhHHHHHHHHHhCCCCCEEEEE
Confidence 47999998 54455566677776 8885533
No 490
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.24 E-value=9.5 Score=36.40 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY 53 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~ 53 (306)
+|.+|+|+|++|..|+.....|...
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC
Confidence 4789999999999999887777663
No 491
>KOG4354|consensus
Probab=72.22 E-value=20 Score=33.24 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=58.3
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-CCCCceecCee----ccCCHH-----hhhhcCCCcEEEEecC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-GKGGKTHLDLP----VFNTVK-----EARDATGAEATVIYVP 96 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-~~~g~~i~Gip----~y~sl~-----el~~~~~iDlavi~vp 96 (306)
-.+|.||+++||+|-.|+...+.+..+-|--+.-|.. ...|+...+.+ .|.+++ .+.+++.+|..+...|
T Consensus 16 ~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaLP 95 (340)
T KOG4354|consen 16 PEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMALP 95 (340)
T ss_pred cCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeeecc
Confidence 3568899999999999999988777775432334443 33344433321 233322 2234456899999999
Q ss_pred chhHHHHHHHHHHcCCCEEEE
Q psy8894 97 PPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.......++..-...-|..+|
T Consensus 96 n~vckpfv~~~~s~~gks~ii 116 (340)
T KOG4354|consen 96 NQVCKPFVSLTESSDGKSRII 116 (340)
T ss_pred hhhHHHHHHHHhhcCCceeee
Confidence 998888887776655554443
No 492
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=72.11 E-value=11 Score=36.96 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Cce-------ecCeeccC--CHHhhhhcCCCcEEEEe--cCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKT-------HLDLPVFN--TVKEARDATGAEATVIY--VPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~-------i~Gip~y~--sl~el~~~~~iDlavi~--vp~~ 98 (306)
+|.|+|. |..|....+.|++.|+++. +.|.+.. -.. ..|++++. +.+.+ . ++|++|.. +|+.
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~~V~-~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~-~--~~d~vv~sp~i~~~ 75 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGAEVT-VTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDL-N--NADLVVKSPGIPPD 75 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCCEEE-EEeCCCCccchhHHHHHhhccCcEEEecCchHHh-c--cCCEEEECCCCCCC
Confidence 4789999 8899977888999999976 5553221 010 13777653 33333 2 38977664 3433
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
-+.+.+|.++|++
T Consensus 76 --~p~~~~a~~~~i~ 88 (433)
T TIGR01087 76 --HPLVQAAAKRGIP 88 (433)
T ss_pred --CHHHHHHHHCCCc
Confidence 2446666666655
No 493
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=72.05 E-value=28 Score=38.67 Aligned_cols=107 Identities=22% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCC-CC---------hHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGK-QG---------TFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~-~G---------~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++|.|+|..+. .| +.+.+.|++.|++++ .+|++. ..+. .+ ..+ .|-.. ..| -
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi-~v~~~p--~~~~-----~~-~~~-----aD~~y-~~p-~ 69 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVV-LVNSNP--ATIM-----TD-PEM-----ADATY-IEP-I 69 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEE-EEcCCc--cccc-----CC-ccc-----CCEEE-ECC-C
Confidence 3678999998432 34 456788999999987 677664 1211 00 001 22221 122 1
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhH-HHHHH-HHHHHhcCCeEEccCCCcee
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLD-MVKVK-HRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~-~~~~~-~~~ar~~gi~iiGPNc~Gi~ 151 (306)
....+.+.|.+.++..++....|-.... ..++. +...+++|+.++||+--.+-
T Consensus 70 ~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~ 124 (1066)
T PRK05294 70 TPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAID 124 (1066)
T ss_pred CHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHH
Confidence 2333344455667887664222321111 11111 12346778888887654433
No 494
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=72.03 E-value=7.2 Score=36.33 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee-------cCeeccCCHHhhhhc-CCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH-------LDLPVFNTVKEARDA-TGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i-------~Gip~y~sl~el~~~-~~iDlavi~vp~~~ 99 (306)
+.+++.|+|+ |..++.+...|.+.|++-+..+|+.... +++ ..+..+.+++++... .+.|++|=+||...
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 4678999999 9999999999999999866688876411 111 111222223333221 23899998988654
No 495
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=72.02 E-value=23 Score=34.47 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--c-----e----ecCeeccC---C
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--K-----T----HLDLPVFN---T 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~-----~----i~Gip~y~---s 78 (306)
++++.|.|.+|..|+..++.++++ -|++++.. .|+... + + ..+..+|. .
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G~~~ 80 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLPGTEVLVGEEG 80 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhccCceEEecHHH
Confidence 478999999999999988888887 45566542 222210 0 0 00122332 2
Q ss_pred HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEEccCCCceecCccc
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLIGPNCPGIIAPEQC 156 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~ 156 (306)
+.++.+..+.|+++-.+-...-..-.-+++++|.+..+ +.. |.- .-.+.-+.+|++|.+++ | ++...+
T Consensus 81 l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaL--ANK--EsLV~aG~l~~~~~k~~g~~ll-P-----VDSEH~ 150 (385)
T COG0743 81 LCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIAL--ANK--ESLVTAGELVMDAAKESGAQLL-P-----VDSEHN 150 (385)
T ss_pred HHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceee--cch--hhhhcccHHHHHHHHHcCCEEe-c-----cCchhH
Confidence 33443333467666655555555555566666666433 221 110 11233356788887776 2 111111
Q ss_pred -cccCCCCCCCCCCCEE--EEecChhh
Q psy8894 157 -KIGIMPGHIHQRGCVG--VVSRSGTL 180 (306)
Q Consensus 157 -~~~~~~~~~~~~G~va--~vSqSG~~ 180 (306)
.+-.++. ..+.+|. +++-||+-
T Consensus 151 AifQ~L~~--~~~~~v~~iiLTASGGp 175 (385)
T COG0743 151 AIFQCLQG--ETQKGVKKIILTASGGP 175 (385)
T ss_pred HHHHHcCc--cccCcceEEEEecCCCC
Confidence 1112222 3344677 88999964
No 496
>PRK12743 oxidoreductase; Provisional
Probab=71.96 E-value=9.3 Score=34.17 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++..|+...+.+.+.|++++....... +... .....+...... ++.. .+...++.+...++++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~--~~~~--~~~~~~~~~~~~--~~~~~~Dl~~~~~~~~~~~~~~ 75 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDE--EGAK--ETAEEVRSHGVR--AEIRQLDLSDLPEGAQALDKLI 75 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCCh--HHHH--HHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999763333321 1110 111112111111 2222 24566677777777776
Q ss_pred Hc--CCCEEEEecCCC
Q psy8894 109 DA--EMPLIVCITEGI 122 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf 122 (306)
+. .+..++. ..|+
T Consensus 76 ~~~~~id~li~-~ag~ 90 (256)
T PRK12743 76 QRLGRIDVLVN-NAGA 90 (256)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 63 4776654 5554
No 497
>PRK12744 short chain dehydrogenase; Provisional
Probab=71.92 E-value=11 Score=33.72 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCceecCeeccCCHHhhhhc-CCCc-EEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTHLDLPVFNTVKEARDA-TGAE-ATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i~Gip~y~sl~el~~~-~~iD-lavi~vp~~~~~~~~~e 106 (306)
.+++.|.|+++..|+...+.|.+.|++++... ++.. .. .. .-...+++... ..+. +..+...++.+.+.+++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~--~~-~~--~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAA--SK-AD--AEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCcc--ch-HH--HHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 46899999999999999999999999955332 2221 10 00 00001222111 0122 12345667777777777
Q ss_pred HHHc--CCCEEEEecCCC
Q psy8894 107 ALDA--EMPLIVCITEGI 122 (306)
Q Consensus 107 ~~~~--Gi~~vvi~t~Gf 122 (306)
+.+. ++..++ ...|+
T Consensus 83 ~~~~~~~id~li-~~ag~ 99 (257)
T PRK12744 83 AKAAFGRPDIAI-NTVGK 99 (257)
T ss_pred HHHhhCCCCEEE-ECCcc
Confidence 7653 577665 46665
No 498
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=71.75 E-value=16 Score=38.17 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce---ecCeecc-CCH-------HhhhhcCCCcEEEEec
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT---HLDLPVF-NTV-------KEARDATGAEATVIYV 95 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~---i~Gip~y-~sl-------~el~~~~~iDlavi~v 95 (306)
.+.++|.|.|++|-.|+...+.|++. |+++++.......-.. ..++..+ .++ .++.+ ++|+++-+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViHlA 390 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLPLV 390 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEECc
Confidence 34578999999999999999999885 7998855432210000 1123322 233 22233 489888432
Q ss_pred ----Cc--------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 96 ----PP--------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 96 ----p~--------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|. .....+++.|.+.| +.++.+++
T Consensus 391 a~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS 432 (660)
T PRK08125 391 AIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST 432 (660)
T ss_pred cccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence 21 22345678888888 55665555
No 499
>PRK06953 short chain dehydrogenase; Provisional
Probab=71.64 E-value=18 Score=31.57 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~~~ 109 (306)
+++.|.|+++..|+...+.|.+.|++++ .++.+. +. ++++... ++. ...+....+.....++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~-~~~r~~--~~---------~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVI-ATARDA--AA---------LAALQAL-GAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEE-EEECCH--HH---------HHHHHhc-cceEEEecCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999999966 444332 11 1122111 122 22234445555555554433
Q ss_pred cCCCEEEEecCCC
Q psy8894 110 AEMPLIVCITEGI 122 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf 122 (306)
..+..++ .+.|.
T Consensus 69 ~~~d~vi-~~ag~ 80 (222)
T PRK06953 69 EALDAAV-YVAGV 80 (222)
T ss_pred CCCCEEE-ECCCc
Confidence 3577665 45554
No 500
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.55 E-value=11 Score=33.78 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhc---CCCcE-EEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDA---TGAEA-TVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~---~~iDl-avi~vp~~~~~~~~~e 106 (306)
+++.|+|+++..|+...+.+.+.|++++ .++++. +. ++++... ..++. .++....+.+.+.+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 69 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVG-AYDINE--AG---------LAALAAELGAGNAWTGALDVTDRAAWDAALAD 69 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCH--HH---------HHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 5799999999999999999999999876 455432 11 1122110 01222 3345666777777777
Q ss_pred HHHc---CCCEEEEecCCC
Q psy8894 107 ALDA---EMPLIVCITEGI 122 (306)
Q Consensus 107 ~~~~---Gi~~vvi~t~Gf 122 (306)
+.+. .+..++. ..|.
T Consensus 70 ~~~~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 70 FAAATGGRLDVLFN-NAGI 87 (260)
T ss_pred HHHHcCCCCCEEEE-CCCC
Confidence 7653 5777665 5554
Done!