BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8895
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 131/525 (24%), Positives = 215/525 (40%), Gaps = 107/525 (20%)
Query: 7 GKLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISL 41
G+L +LTGH SV G+ +++ GH SSV ++
Sbjct: 47 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 106
Query: 42 HPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCE 101
P + +A D T ++W+ R + TLTGH++++ V A P +T+ S +
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPD--GQTIASASDD 160
Query: 102 RIMFVLGTAGFLLSCL-------------------PSLLDFGTIRPWQLQIIQEQCFLNL 142
+ + + G LL L S D T++ W N
Sbjct: 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR---------NG 211
Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPM-- 200
Q +Q + H+ R + + D Q + +++++ V N Q++Q + +
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNG 267
Query: 201 ----PKPQ-------------WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKII 243
P Q W+ +L + ++GH V VA P + A+ S DK +
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD 303
K+W+ G+ +LTGH SV G+ SP + S DD+TVK W+ G
Sbjct: 328 KLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 386
Query: 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------ESHPVIT 347
S G+ F G + + DKTVKL+ + + + + +
Sbjct: 387 SVRGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI 406
S D T++LW+ G+ L TLT H SVR VA P ASAS D +K W G+ +
Sbjct: 444 ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 501
Query: 407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL 450
Q L GH++ + + + +G + S +D+ T+ W+ R G Q L
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 545
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 124/489 (25%), Positives = 208/489 (42%), Gaps = 82/489 (16%)
Query: 18 GSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNT 77
GS G+ H SSV ++ P + +A D T ++W+ R + TLTGH+++
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 59
Query: 78 IASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCL-------------------P 118
+ V A P +T+ S ++ + + G LL L
Sbjct: 60 VWGV---AFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 114
Query: 119 SLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178
S D T++ W N Q +Q + H+ + + D Q + +++++
Sbjct: 115 SASDDKTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPD----GQTIASASDDK 161
Query: 179 LVPTTASNTQIIQQAKAKALPM------PKPQ-------------WHAPWKLYRVISGHL 219
V N Q++Q + + P Q W+ +L + ++GH
Sbjct: 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 221
Query: 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC 279
VR VA P + A+ S DK +K+W+ G+L +LTGH SV G+ P + S
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Query: 280 GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT 339
DD+TVK W+ N +Q + S S ++ + F G + + DKTVKL+ +
Sbjct: 281 SDDKTVKLWN--RNGQLLQTLTGHSSS-VWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Query: 340 E----------------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
+ + + + S D T++LW+ G+ L TLT H SVR VA P
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 396
Query: 384 LYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVN-NEGVLVSGADNGTMCFWDW 441
ASAS D +K W G+ +Q L GH++ + + + ++ + S +D+ T+ W+
Sbjct: 397 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN- 454
Query: 442 RTGYNFQRL 450
R G Q L
Sbjct: 455 RNGQLLQTL 463
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/515 (24%), Positives = 213/515 (41%), Gaps = 106/515 (20%)
Query: 7 GKLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISL 41
G+L +LTGH SVRG+ +++ GH SSV ++
Sbjct: 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 147
Query: 42 HPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCE 101
P + +A D T ++W+ R + TLTGH++++ V A P +T+ S +
Sbjct: 148 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPD--GQTIASASDD 201
Query: 102 RIMFVLGTAGFLLSCL-------------------PSLLDFGTIRPWQLQIIQEQCFLNL 142
+ + + G LL L S D T++ W + L
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQT 257
Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPM-- 200
SV+ + FR Q + +++++ V N Q++Q + +
Sbjct: 258 LTGHSSSVNGVAFRP---------DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 308
Query: 201 ----PKPQ-------------WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKII 243
P Q W+ + + ++GH V VA P + A+ S DK +
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD 303
K+W+ G+L +LTGH SVRG+ SP + S DD+TVK W+ N +Q +
Sbjct: 369 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGH 425
Query: 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------ESHPVIT 347
S S ++ + F + + DKTVKL+ + + + + +
Sbjct: 426 SSS-VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484
Query: 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI 406
S D T++LW+ G+ L TLT H SVR VA P ASAS D +K W G+ +
Sbjct: 485 ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 542
Query: 407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
Q L GH++ + + + +G + S + + T+ W+
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 33/304 (10%)
Query: 174 STENQLVPTTASNTQIIQQAKA-KALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGN 231
+TE + T A+ Q + A ++ P P KP + L ++GH V V P
Sbjct: 2 ATEEKKPETEAARAQPTPSSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNG 57
Query: 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
EW A+ SADK+IK+W GK + +++GH + + S L S DD+T+K WD+
Sbjct: 58 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 117
Query: 292 YNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP------ 344
K ++ S +F F+ + +++ D++V+++ ++ P
Sbjct: 118 SGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 345 -----------VITGSHDCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASAS 391
+++ S+D R+WD A+G+ L TL + V V P Y+ A+
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 392 PDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
+ +K W +GK ++ GH I + V +VSG+++ + W+ +T
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 448 QRLQ 451
Q+LQ
Sbjct: 295 QKLQ 298
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TGK +L H V +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 239 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 370 NHKKSVRSVALHPTLYMFASASPDN---IKQWK 399
H V S A HPT + ASA+ +N IK WK
Sbjct: 299 GHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 113 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 190
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 191 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 231
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 232 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 277 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 33/304 (10%)
Query: 174 STENQLVPTTASNTQIIQQAKA-KALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGN 231
+TE + T A+ Q + A ++ P P KP + L ++GH V V P
Sbjct: 4 ATEEKKPETEAARAQPTPSSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNG 59
Query: 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
EW A+ SADK+IK+W GK + +++GH + + S L S DD+T+K WD+
Sbjct: 60 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 119
Query: 292 YNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP------ 344
K ++ S +F F+ + +++ D++V+++ ++ P
Sbjct: 120 SGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 176
Query: 345 -----------VITGSHDCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASAS 391
+++ S+D R+WD A+G+ L TL + V V P Y+ A+
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 236
Query: 392 PDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
+ +K W +GK ++ GH I + V +VSG+++ + W+ +T
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 448 QRLQ 451
Q+LQ
Sbjct: 297 QKLQ 300
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TGK +L H V +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 241 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Query: 370 NHKKSVRSVALHPTLYMFASASPDN---IKQWK 399
H V S A HPT + ASA+ +N IK WK
Sbjct: 301 GHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 115 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 192
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 193 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 233
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 234 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 279 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 9 PTPVKPNY----ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 121
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ +++K W +GK ++ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 24/213 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TG +L H V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Query: 370 NHKKSVRSVALHPTLYMFASASPDN---IKQWK 399
H V S A HPT + ASA+ +N IK WK
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 94 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 171
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 172 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 212
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T ++ ++ +K K L + +GH C+ G +W +G
Sbjct: 213 ATLDNDLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/310 (19%), Positives = 112/310 (36%), Gaps = 66/310 (21%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
GH ++ ++ ++L++A D T ++WDV + + TL GH+N + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ--IIQEQCFLNLQEVQRH 148
+ + + RI V G L LP+ D + + +I + L +
Sbjct: 126 VSGS--FDESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-D 180
Query: 149 SVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAP 208
+ ++L + +S + P+ + L T ++ ++ +K K L
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL---------- 230
Query: 209 WKLYRVISGHLGWVRCVAVE---PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
+ +GH C+ G +W +GS D ++ +W+L T ++ L GH V
Sbjct: 231 ----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
P +E+ I S +N
Sbjct: 287 STACHP--------------------------------TENIIASAALEN---------- 304
Query: 326 DKTVKLYKED 335
DKT+KL+K D
Sbjct: 305 DKTIKLWKSD 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 32/286 (11%)
Query: 190 IQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA 249
Q ++K P+ KP + L ++GH V V P EW A+ SADK+IK+W
Sbjct: 16 FQGTQSKPTPV-KPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
Query: 250 TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-I 308
GK + +++GH + + S L S DD+T+K WD+ K ++ S +
Sbjct: 71 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYV 127
Query: 309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHD 351
F F+ + +++ D++V+++ ++ P +++ S+D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 352 CTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNL 409
R+WD A+G+ L TL + V V P Y+ A+ + +K W +GK ++
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 410 PGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
GH I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TGK +L H V +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 234 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Query: 370 NHKKSVRSVALHPTLYMFASASPDN---IKQWK 399
H V S A HPT + ASA+ +N IK WK
Sbjct: 294 GHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 108 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 185
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 186 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 226
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 227 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 272 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 9 PTPVKPNY----ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 121
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 24/213 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TG +L H V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Query: 370 NHKKSVRSVALHPTLYMFASASPDN---IKQWK 399
H V S A HPT + ASA+ +N IK WK
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 26/265 (9%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
GH ++ ++ ++L++A D T ++WDV + + TL GH+N + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ--IIQEQCFLNLQEVQRH 148
+ + + RI V G L LP+ D + + +I + L +
Sbjct: 126 VSGS--FDESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-D 180
Query: 149 SVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAP 208
+ ++L + +S + P+ + L T + ++ +K K L
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---------- 230
Query: 209 WKLYRVISGHLGWVRCVAVE---PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
+ +GH C+ G +W +GS D ++ +W+L T ++ L GH V
Sbjct: 231 ----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 266 GLTVSPRHPYLFSCG--DDRTVKCW 288
P + S +D+T+K W
Sbjct: 287 STACHPTENIIASAALENDKTIKLW 311
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 258 GSEDNMVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 6 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 118
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 172
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 91 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 168
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 169 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 209
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 210 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 255 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 2 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 58 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 114
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 52 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 111
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 168
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 288
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 289 IIASAALENDKTIKLW 304
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 87 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 164
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 165 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 205
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 206 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 251 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 11 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 66
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 67 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 123
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 61 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 120
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 177
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 297
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 298 IIASAALENDKTIKLW 313
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 96 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 173
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 174 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 214
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 215 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 260 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 32/287 (11%)
Query: 190 IQQAKAKALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDL 248
+ + ++ P P KP + L ++GH V V P EW A+ SADK+IK+W
Sbjct: 3 LGSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 249 ATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG- 307
GK + +++GH + + S L S DD+T+K WD+ K ++ S
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNY 115
Query: 308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSH 350
+F F+ + +++ D++V+++ ++ P +++ S+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 351 DCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQN 408
D R+WD A+G+ L TL + V V P Y+ A+ + +K W +GK ++
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 409 LPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
GH I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 178
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 97 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 174
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 175 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 215
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 216 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 261 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 7 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 119
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 57 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 116
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 173
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 293
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 294 IIASAALENDKTIKLW 309
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 92 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 169
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 170 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 210
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 211 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 256 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 6 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 118
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 172
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 91 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 168
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 169 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 209
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 210 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 255 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
P P KP + L ++GH V V P EW A+ SADK+IK+W GK + ++
Sbjct: 12 PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
+GH + + S L S DD+T+K WD+ K ++ S +F F+
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 124
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
+ +++ D++V+++ ++ P +++ S+D R+WD
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
A+G+ L TL + V V P Y+ A+ + +K W +GK ++ GH
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 178
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 97 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 174
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 175 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 215
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 216 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 261 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 34/284 (11%)
Query: 199 PMPKPQWHAP-------WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG 251
P+ P++ + + L ++GH V V P EW A+ SADK+IK+W G
Sbjct: 2 PLGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFS 310
K + +++GH + + S L S DD+T+K WD+ K ++ S +F
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFC 118
Query: 311 MTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCT 353
F+ + +++ D++V+++ ++ P +++ S+D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 354 IRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPG 411
R+WD A+G+ L TL + V V P Y+ A+ + +K W +GK ++ G
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 412 HN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
H I + V +VSG+++ + W+ +T Q+LQ
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 178
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 97 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 174
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 175 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 215
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 216 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 261 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
+ L ++GH V V P EW A+ SADK+IK+W GK + +++GH + +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
S L S DD+T+K WD+ K ++ S +F F+ + +++ D+
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
+V+++ ++ P +++ S+D R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
V V P Y+ A+ + +K W +GK ++ GH I + V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
+VSG+++ + W+ +T Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 27/246 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 175
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 426 VLVSGA 431
++ S A
Sbjct: 296 IIASAA 301
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 21/210 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TGK +L H V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Query: 370 NHKKSVRSVALHPTLYMFASASPDNIKQWK 399
H V S A HPT + ASA+ +N K K
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIK 309
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 104/291 (35%), Gaps = 80/291 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 94 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 171
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 172 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 212
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 213 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVK 286
S D ++ +W+L T ++ L GH V P + S +D+T+K
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 258 GSEDNLVYIWNLQ-TKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLFKSD 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
+ L ++GH V V P EW A+ SADK+IK+W GK + +++GH + +
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
S L S DD+T+K WD+ K ++ S +F F+ + +++ D+
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
+V+++ ++ P +++ S+D R+WD A+G+ L TL +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
V V P Y+ A+ + +K W +GK ++ GH I + V
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 248
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
+VSG+++ + W+ +T Q+LQ
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 55 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 114
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 171
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 90 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 167
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 168 YD-GLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 208
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 209 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 254 GSEDNLVYIWNLQ-TKEIVQ--KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
+ L ++GH V V P EW A+ SADK+IK+W GK + +++GH + +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
S L S DD+T+K WD+ K ++ S +F F+ + +++ D+
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
+V+++ ++ P +++ S+D R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
V V P Y+ A+ + +K W +GK ++ GH I + V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
+VSG+++ + W+ +T Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 27/246 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 175
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 426 VLVSGA 431
++ S A
Sbjct: 296 IIASAA 301
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 21/210 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + + GH +V C P + +GS D+ +++WD+ TGK +L H V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D + WD + ++ D + + F +G ++ D T+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 330 KLYKEDDSATEESHP--------------------VITGSHDCTIRLWDLAAGKSLCTLT 369
KL+ +++ +++GS D + +W+L + + L
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Query: 370 NHKKSVRSVALHPTLYMFASASPDNIKQWK 399
H V S A HPT + ASA+ +N K K
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIK 309
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 94 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 171
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 172 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 212
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 213 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K +
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KLYK D
Sbjct: 258 GSEDNLVYIWNLQ-TKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
+ L ++GH V V P EW A SADK+IK+W GK + +++GH + +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
S L S DD+T+K WD+ K ++ S +F F+ + +++ D+
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
+V+++ ++ P +++ S+D R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
V V P Y+ A+ + +K W +GK ++ GH I + V
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
+VSG+++ + W+ +T Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K + ISGH + VA + + S DK +K+WD+++GK +L GH V
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
+P+ + S D +V+ WD++ K P D S + F+ GS ++++ D
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH---FNRDGSLIVSSSYDGL 175
Query: 329 VKLYK-----------EDDSA-------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370
+++ +DD+ + ++ + D T++LWD + GK L T T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 371 HKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG 425
HK + + ++ S S DN + W + +Q L GH + +I++ C E
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 426 VLVSGA--DNGTMCFW 439
++ S A ++ T+ W
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 80/293 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+++GK ++ GH + V + +P +++++ D + R+W
Sbjct: 94 IWDVSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV+T + TL H++ +++V G L+ + S
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAV------------------------HFNRDGSLI--VSSS 171
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G R W QC L + V + F P+ + L
Sbjct: 172 YD-GLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS----------------PNGKYILA 212
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE---PGNEWFATG 237
T + ++ +K K L + +GH C+ G +W +G
Sbjct: 213 ATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCW 288
S D ++ +W+L T ++ L GH V P + S +D+T+K W
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS---PRHPYLFS 278
V V P ++ + D +K+WD + GK + TGH + + ++ S
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT---EADKTVKLYKED 335
+D V W+L+ K VQ + + + T + +I + E DKT+KL+K D
Sbjct: 258 GSEDNLVYIWNLQ-TKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 136/360 (37%), Gaps = 112/360 (31%)
Query: 1 VWDLATGKLKLSLTGHVGSVR--------------------------GLTVIRHYHGHLS 34
VWD TG + +L GH SV+ G IR HGH
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193
Query: 35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKT 94
+V+++S+ P D +++A RD T ++W+V+T V T TGH + V Q GT
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN----QDGT-- 247
Query: 95 VLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLV 154
L+ SC + T+R W + ++C L+E
Sbjct: 248 -LIASCS--------------------NDQTVRVW--VVATKECKAELRE---------- 274
Query: 155 FRSLKRTHDMFISCQELVP-STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYR 213
H + C P S+ + + T S T K P P
Sbjct: 275 -------HRHVVECISWAPESSYSSISEATGSET------KKSGKPGP------------ 309
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
+ +GS DK IK+WD++TG ++L GH VRG+
Sbjct: 310 -------------------FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
++ SC DD+T++ WD Y E + S+ F + ++T D+TVK+++
Sbjct: 351 KFILSCADDKTLRVWD--YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 9/232 (3%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R + GH V V++ P + + S DK IK+W++ TG + TGH VR + +
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
+ SC +D+TV+ W + + + S ++S S + +T K
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-- 303
Query: 333 KEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASAS 391
+ + +++GS D TI++WD++ G L TL H VR V H ++ + A
Sbjct: 304 -----SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 392 PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR 442
++ W + ++ L H + S+ + +V+G+ + T+ W+ R
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 41/268 (15%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
+SGH V V P + S D IKVWD TG + +L GH SV+ ++
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
L SC D T+K WD + + D + S++ +G +++ DKT+K+++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 334 EDDS-----------------ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVR 376
++ + + S+D T+R+W +A + L H+ V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 377 SVALHPTL---------------------YMFASASPDNIKQWKCPEGKFIQNLPGHNAI 415
++ P ++ + + IK W G + L GH+
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 416 INSICVNNEG-VLVSGADNGTMCFWDWR 442
+ + ++ G ++S AD+ T+ WD++
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYK 368
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 36/217 (16%)
Query: 254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSESGIFSMT 312
K +L+GH V + P + S +D T+K WD E G DS + ++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS---VQDIS 157
Query: 313 FDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
FD+SG L + A D TI+LWD + + T+ H
Sbjct: 158 FDHSGKLLASCSA-------------------------DMTIKLWDFQGFECIRTMHGHD 192
Query: 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA 431
+V SV++ P SAS D IK W+ G ++ GH + + N +G L++
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 432 DNG-TMCFW-----DWRTGYNFQRLQVRCVSGFPKPS 462
N T+ W + + R V C+S P+ S
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 26/258 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K R + GH G V + + + +GS D+ +KVW+ TG+ +L GH +VR + +
Sbjct: 150 KCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ + S D T++ WD+E + M + + + +D G R+++ D V
Sbjct: 208 HEKR--VVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYD--GRRVVSGAYDFMV 261
Query: 330 KLYKEDDSA---TEESHP------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374
K++ + T + H V++GS D +IR+WD+ G + TLT H+
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSI-CVN-NEGVLVSGAD 432
+ L + + +A +K W G+ +Q L G N +++ C+ N+ +++ +D
Sbjct: 322 TSGMELKDNILVSGNADS-TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 380
Query: 433 NGTMCFWDWRTGYNFQRL 450
+GT+ WD +TG + L
Sbjct: 381 DGTVKLWDLKTGEFIRNL 398
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 105/278 (37%), Gaps = 72/278 (25%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
+V+ GH V GN +GS D +KVW TGK +L GH G V + R
Sbjct: 112 KVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMR 168
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
+ S DRT+K W+ E + I ++ S R + +
Sbjct: 169 DNIIISGSTDRTLKVWNAETGEC------------IHTLYGHTSTVRCMHLHEKR----- 211
Query: 333 KEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV-------------- 378
V++GS D T+R+WD+ G+ L L H +VR V
Sbjct: 212 ------------VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 259
Query: 379 -----------ALH--------------PTLYMFASASPDNIKQWKCPEGKFIQNLPGHN 413
LH +++ + + +I+ W G I L GH
Sbjct: 260 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
++ + + + + +LVSG + T+ WD +TG Q LQ
Sbjct: 320 SLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 1 VWDLATGKLKLSLTGHVGSV----------------RGLTV--------IRHYHGHLSSV 36
VW TGK +L GH G V R L V I +GH S+V
Sbjct: 143 VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 202
Query: 37 NTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
+ LH +++ RD+T RVWD+ T ++ L GH + V
Sbjct: 203 RCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VWD+ TG+ L GHV +VR + Y G +++ D +VW
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCV----QYDGRR--------------VVSGAYDFMVKVW 264
Query: 61 DVRTKANVYTLTGHTNTIASV 81
D T+ ++TL GHTN + S+
Sbjct: 265 DPETETCLHTLQGHTNRVYSL 285
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 18/73 (24%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VWD+ TG +LTGH G+ + ++L++ DST ++W
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMEL------------------KDNILVSGNADSTVKIW 344
Query: 61 DVRTKANVYTLTG 73
D++T + TL G
Sbjct: 345 DIKTGQCLQTLQG 357
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
W GS D I+V++ TG+ + H +R + V P PY+ S DD TVK W+ E
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
N A ++ E + + F+ S + D+TVK++ S
Sbjct: 129 NWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
+ +P +IT S D TI++WD + TL H +V HPTL + S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
D +K W K + L + + S C+ + + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 47/192 (24%)
Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
W W L + GH +V CVA P + FA+G D+ +KVW L +LT G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TG 182
Query: 263 SVRGLTVS-----PRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSES-GIFSMTFDN 315
RG+ P PY+ + DD T+K WD + G M + S +F
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF------ 236
Query: 316 SGSRLITTEADKTVKLYKEDDSATEESHP----VITGSHDCTIRLWDLAAGKSLCTLTNH 371
HP +I+GS D T+++W+ + K TL
Sbjct: 237 ---------------------------HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 372 KKSVRSVALHPT 383
+ +A HPT
Sbjct: 270 LERSWCIATHPT 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 GHLSSVNTISLHPTID--VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEP 88
G VN + +P D +ITA D T ++WD +TK+ V TL GH + ++ V + P
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 89 QV 90
+
Sbjct: 242 II 243
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 47/127 (37%)
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGK 404
+I GS D IR+++ G+ + H +RS+A+HPT
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT--------------------- 108
Query: 405 FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL------QVRCVSGF 458
+ ++SG+D+ T+ W+W + ++ V CV+
Sbjct: 109 -------------------KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 459 PK-PSVF 464
PK PS F
Sbjct: 150 PKDPSTF 156
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT 64
GH+S+V+ HPT+ ++I+ D T ++W+ T
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK-ANVYTLTGHTNTIASVVTQASE 87
+ H + +I++HPT +++ D T ++W+ A T GH + + V +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 88 P 88
P
Sbjct: 153 P 153
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
W GS D I+V++ TG+ + H +R + V P PY+ S DD TVK W+ E
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
N A ++ E + + F+ S + D+TVK++ S
Sbjct: 129 NWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
+ +P +IT S D TI++WD + TL H +V HPTL + S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
D +K W K + L + + S C+ + + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 47/192 (24%)
Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
W W L + GH +V CVA P + FA+G D+ +KVW L +LT G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TG 182
Query: 263 SVRGLTVS-----PRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSES-GIFSMTFDN 315
RG+ P PY+ + DD T+K WD + G M + S +F
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF------ 236
Query: 316 SGSRLITTEADKTVKLYKEDDSATEESHP----VITGSHDCTIRLWDLAAGKSLCTLTNH 371
HP +I+GS D T+++W+ + K TL
Sbjct: 237 ---------------------------HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 372 KKSVRSVALHPT 383
+ +A HPT
Sbjct: 270 LERSWCIATHPT 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 GHLSSVNTISLHPTID--VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEP 88
G VN + +P D +ITA D T ++WD +TK+ V TL GH + ++ V + P
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 89 QV 90
+
Sbjct: 242 II 243
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 47/127 (37%)
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGK 404
+I GS D IR+++ G+ + H +RS+A+HPT
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT--------------------- 108
Query: 405 FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL------QVRCVSGF 458
+ ++SG+D+ T+ W+W + ++ V CV+
Sbjct: 109 -------------------KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 459 PK-PSVF 464
PK PS F
Sbjct: 150 PKDPSTF 156
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT 64
GH+S+V+ HPT+ ++I+ D T ++W+ T
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK-ANVYTLTGHTNTIASVVTQASE 87
+ H + +I++HPT +++ D T ++W+ A T GH + + V +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 88 P 88
P
Sbjct: 153 P 153
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 83/262 (31%)
Query: 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG 280
++R V P ++ ATG+ D++I++WD+ K+ + L GH + L P L S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 281 DDRTVKCWDLEYNK-------------APVQPGSM---------------DSESG----- 307
DRTV+ WDL + V PG DSE+G
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 308 --------------IFSMTFDNSGSRLITTEADKTVKLY-------KEDD---------- 336
++S+ F G +++ D++VKL+ K D
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 337 ------------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA----- 379
+ T+ +++GS D + WD +G L L H+ SV SVA
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364
Query: 380 -LHPTLYMFASASPD-NIKQWK 399
L P +FA+ S D + WK
Sbjct: 365 SLGPEYNVFATGSGDCKARIWK 386
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 61/291 (20%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-------------- 263
H V CV E+ ATG +K +V+ ++ G L L+ +
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 264 ----VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSESGIFSMTFDNSGS 318
+R + SP +L + +DR ++ WD+E K + G E I+S+ + SG
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGD 178
Query: 319 RLITTEADKTVKLYK------------EDDSATEESHP-----VITGSHDCTIRLWDLAA 361
+L++ D+TV+++ ED T P + GS D +R+WD
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 362 GKSLCTL-------TNHKKSVRSVALHPTLYMFASASPD-NIKQW-----------KCPE 402
G + L T HK SV SV S S D ++K W K P
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 403 -GKFIQNLPGHNAIINSICV-NNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
G GH + S+ N+ ++SG+ + + FWD ++G LQ
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 49/276 (17%)
Query: 20 VRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIA 79
+ ++ GH + ++ P+ D L++ D T R+WD+RT TL+
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---- 207
Query: 80 SVVTQASEPQVGTKTVLLESCERIMFVLGT-AGFLLSCLPSLLDFGTIRPWQLQIIQEQC 138
V T A P G K + S +R + V + GFL+ L S + GT
Sbjct: 208 GVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGT------------- 253
Query: 139 FLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKAL 198
+ SV+++VF T D Q +V + ++ V +Q A K+
Sbjct: 254 ------GHKDSVYSVVF-----TRD----GQSVVSGSLDRSVKLWN-----LQNANNKS- 292
Query: 199 PMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258
P Y GH +V VA +E+ +GS D+ + WD +G L L
Sbjct: 293 DSKTPNSGTCEVTY---IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Query: 259 GHVGSV------RGLTVSPRHPYLFSCGDDRTVKCW 288
GH SV G ++ P + + D + W
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 38/194 (19%)
Query: 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYK----------EDDSATEE--------S 342
S+D S + + F N G L T +KT ++Y+ DDSA + S
Sbjct: 60 SLDHTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 343 HP-----------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY 385
P + TG+ D IR+WD+ K + L H++ + S+ P+
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 386 MFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT 443
S S D ++ W G+ L + + +G + +G+ + + WD T
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 444 GYNFQRLQVRCVSG 457
G+ +RL SG
Sbjct: 239 GFLVERLDSENESG 252
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 25/90 (27%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGR-DSTARV 59
+WDL TG+ L+L+ G V T+++ P I AG D RV
Sbjct: 191 IWDLRTGQCSLTLSIEDG-----------------VTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 60 WDVRTKANVYTL-------TGHTNTIASVV 82
WD T V L TGH +++ SVV
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVV 263
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 2 WDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
WD +G L L GH SV + V N SL P +V T D AR+W
Sbjct: 337 WDKKSGNPLLMLQGHRNSVISVAV----------ANGSSLGPEYNVFATGSGDCKARIWK 386
Query: 62 VRTKA 66
+ A
Sbjct: 387 YKKIA 391
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 36 VNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
+ ++ P L T D R+WD+ + V L GH I S+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
W GS D I+V++ TG+ + H +R + V P PY+ S DD TVK W+ E
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
N A Q E + + F+ S + D+TVK++ S
Sbjct: 129 NWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
+ +P +IT S D TI++WD + TL H +V HPTL + S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PDN-IKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
D +K W K + L + + S C+ + + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 47/192 (24%)
Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
W W L + GH +V CVA P + FA+G D+ +KVW L +LT G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TG 182
Query: 263 SVRGLTVS-----PRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSES-GIFSMTFDN 315
RG+ P PY+ + DD T+K WD + G M + S +F
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF------ 236
Query: 316 SGSRLITTEADKTVKLYKEDDSATEESHP----VITGSHDCTIRLWDLAAGKSLCTLTNH 371
HP +I+GS D T+++W+ + K TL
Sbjct: 237 ---------------------------HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 372 KKSVRSVALHPT 383
+ +A HPT
Sbjct: 270 LERSWCIATHPT 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 GHLSSVNTISLHPTID--VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEP 88
G VN + +P D +ITA D T ++WD +TK+ V TL GH + ++ V + P
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 89 QV 90
+
Sbjct: 242 II 243
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT 64
GH+S+V+ HPT+ ++I+ D T ++W+ T
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 343 HP----VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQ 397
HP V+T + + LW+ + ++ + VR+ S D I+
Sbjct: 22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81
Query: 398 WKCPEGKFIQNLPGHNAIINSICVN-NEGVLVSGADNGTMCFWDWRTGYNFQRL------ 450
+ G+ + + H I SI V+ + ++SG+D+ T+ W+W + ++
Sbjct: 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 451 QVRCVSGFPK-PSVF 464
V CV+ PK PS F
Sbjct: 142 FVMCVAFNPKDPSTF 156
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK-ANVYTLTGHTNTIASVVTQASE 87
+ H + +I++HPT +++ D T ++W+ A T GH + + V +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 88 P 88
P
Sbjct: 153 P 153
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
W GS D I+V++ TG+ + H +R + V P PY+ S DD TVK W+ E
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLY--------------KEDDS 337
N A Q E + + F+ S + D+TVK++ +E
Sbjct: 129 NWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 338 ATEESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
+ +P +IT S D TI++WD + TL H +V HPTL + S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PDN-IKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
D +K W K + L + + S C+ + + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 47/192 (24%)
Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
W W L + GH +V CVA P + FA+G D+ +KVW L +LT G
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TG 182
Query: 263 SVRGLTVS-----PRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSES-GIFSMTFDN 315
RG+ P PY+ + DD T+K WD + G M + S +F
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF------ 236
Query: 316 SGSRLITTEADKTVKLYKEDDSATEESHP----VITGSHDCTIRLWDLAAGKSLCTLTNH 371
HP +I+GS D T+++W+ + K TL
Sbjct: 237 ---------------------------HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 372 KKSVRSVALHPT 383
+ +A HPT
Sbjct: 270 LERSWCIATHPT 281
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 GHLSSVNTISLHPTID--VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEP 88
G VN + +P D +ITA D T ++WD +TK+ V TL GH + ++ V + P
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 89 QV 90
+
Sbjct: 242 II 243
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTL--------------TGHT 75
GH+S+V+ HPT+ ++I+ D T ++W+ T TL TG
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 76 NTIAS 80
N IAS
Sbjct: 285 NYIAS 289
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 47/127 (37%)
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGK 404
+I GS D IR+++ G+ + H +RS+A+H P
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-------------------PTKP 110
Query: 405 FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL------QVRCVSGF 458
++ +SG+D+ T+ W+W + ++ V CV+
Sbjct: 111 YV---------------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 459 PK-PSVF 464
PK PS F
Sbjct: 150 PKDPSTF 156
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK-ANVYTLTGHTNTIASVVTQASE 87
+ H + +I++HPT +++ D T ++W+ A T GH + + V +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 88 P 88
P
Sbjct: 153 P 153
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R+++GH G V C+ + TGS+D ++VWD+ TG++ +L H +V L +
Sbjct: 167 RILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-- 222
Query: 273 HPYLFSCGDDRTVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDN------SGSRLI---- 321
+ + +C DR++ WD+ ++ + + + + FD+ SG R I
Sbjct: 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282
Query: 322 --TTEADKTVKLYKEDDSATE-ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378
T E +T+ +K + + V++GS D TIRLWD+ G L L H++ VR +
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 379 ALHPTLYMFASASPDNIKQW--------KCPEGKF-IQNLPGHNAIINSICVNNEGVLVS 429
+ + A IK W + P G ++ L H+ + + +E +VS
Sbjct: 343 RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVS 400
Query: 430 GADNGTMCFWDW 441
+ + T+ WD+
Sbjct: 401 SSHDDTILIWDF 412
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 28/229 (12%)
Query: 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290
++ +G D IK+WD T + K LTGH GSV L R + + D TV+ WD+
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDV 200
Query: 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE---------- 340
N + + + + F+N ++T D+++ ++ + S T+
Sbjct: 201 --NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVW-DMASPTDITLRRVLVGH 255
Query: 341 ---------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
+ +++ S D TI++W+ + + + TL HK+ + + L + + +S
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL-VVSGSS 314
Query: 392 PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440
+ I+ W G ++ L GH ++ I +N+ + VSGA +G + WD
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI-VSGAYDGKIKVWD 362
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 128/360 (35%), Gaps = 105/360 (29%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD T + K LTGH GSV + L V+IT DST RVW
Sbjct: 157 IWDKNTLECKRILTGHTGSV------------------LCLQYDERVIITGSSDSTVRVW 198
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
DV T + TL H CE ++ + G +++C
Sbjct: 199 DVNTGEMLNTLIHH-------------------------CEAVLHLRFNNGMMVTCSKD- 232
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
+I W + + + R +V+ + F D +I
Sbjct: 233 ---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDF------DDKYI-------------- 269
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWH-APWKLYRVISGHLGWVRCVAVEPGNEWFATGSA 239
+AS + I+ W+ + + R ++GH + C+ + +GS+
Sbjct: 270 -VSASGDRTIK------------VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS 314
Query: 240 DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP 299
D I++WD+ G L GH VR + + + S D +K WDL P P
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAP 372
Query: 300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDL 359
+G+ + T + + ++++ + +++ SHD TI +WD
Sbjct: 373 ----------------AGTLCLRTLVEHSGRVFR----LQFDEFQIVSSSHDDTILIWDF 412
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 65/215 (30%)
Query: 303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE---------------ESHPVIT 347
++ G++ + +D+ ++++ D T+K++ ++ + + +IT
Sbjct: 131 ETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 188
Query: 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSV----------------RSVAL----HPT---- 383
GS D T+R+WD+ G+ L TL +H ++V RS+A+ PT
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 384 ------------------LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG 425
Y+ +++ IK W +F++ L GH I + +
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR- 307
Query: 426 VLVSGADNGTMCFWDWRTGYNFQRLQ-----VRCV 455
++VSG+ + T+ WD G + L+ VRC+
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%)
Query: 215 ISGHL-GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
+ GH+ + C+ E + + TG+ DK+I+V+D K L L+GH G V L +
Sbjct: 117 LRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HG 173
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV---K 330
L S DRTV+ WD++ +S + + ++T D T+ K
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 331 LYKED---DSATEESHP--------------------------------VITGSHDCTIR 355
L KE D E +P V++GS+D T+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA 414
+WD+A K L L+ H + S SAS D I+ W G+ + L GH A
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 415 IINSICVNNEGVLVSGADNGTMCFWD 440
++ + ++++ LVS A +G++ WD
Sbjct: 354 LVGLLRLSDK-FLVSAAADGSIRGWD 378
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 49/272 (18%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH- 273
+SGH G V + G +GS D+ ++VWD+ G GH +VR L +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 274 -PYLFSCGDDRTVKCWDL----------EYNKAPV-----------------QPGSMDSE 305
Y+ + D T+ W L E + P+ S+ +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 306 SG----IFSMTFDN-------SGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI 354
SG + S ++DN + + + + T ++Y E I+ S D TI
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST--IYDHERKRCISASMDTTI 334
Query: 355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNA 414
R+WDL G+ + TL H V + L ++ ++A+ +I+ W + + + H+
Sbjct: 335 RIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDAND--YSRKFSYHHT 391
Query: 415 IINSICVN--NEGVLVSGADNGTMCFWDWRTG 444
+++I ++ +LVSG++N ++ R+G
Sbjct: 392 NLSAITTFYVSDNILVSGSEN-QFNIYNLRSG 422
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 110/289 (38%), Gaps = 56/289 (19%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
V+D K L L+GH G G+ +++ HG +L++ D T RVW
Sbjct: 146 VYDSINKKFLLQLSGHDG---GVWALKYAHG--------------GILVSGSTDRTVRVW 188
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
D++ + GH +T+ + + K ++ S + + V + L S+
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYK---NIKYIVTGSRDNTLHV-----WKLPKESSV 240
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G + L F +E F + R H ++ V N +V
Sbjct: 241 PDHGEEHDYPL------VFHTPEE-------NPYFVGVLRGH---MASVRTVSGHGNIVV 284
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
+ NT I+ A K ++SGH + + + + S D
Sbjct: 285 SGSYDNTLIVWDV-------------AQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
I++WDL G+L +L GH V L +S + +L S D +++ WD
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
V+ GH+ VR V+ GN +GS D + VWD+A K L+GH +
Sbjct: 265 VLRGHMASVRTVSGH-GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
S D T++ WDLE + + G+ + S L++ AD +++ +
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWD 378
Query: 334 EDDSATEESH 343
+D + + S+
Sbjct: 379 ANDYSRKFSY 388
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 367 TLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV 426
TL H SV + Y+ A I+ + KF+ L GH+ + ++ + G+
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 427 LVSGADNGTMCFWDWRTG 444
LVSG+ + T+ WD + G
Sbjct: 176 LVSGSTDRTVRVWDIKKG 193
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/454 (20%), Positives = 174/454 (38%), Gaps = 75/454 (16%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIAS---------V 81
GH +SVN P ++L + D T R+WDVR+ ++ ++S +
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 82 VTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP---SLLDFGTIRPW-QLQII--Q 135
V S G K ++ + ++F + T+G L S + + P+ L +I
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 136 EQCF--------LNLQEVQRHS--VHTLVFRS-----LKRTHDMFISCQELVPSTENQLV 180
+ C L + + + H VH ++F L + D I E +N +
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 927
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW--------VRCVAVEPGNE 232
+ Q+ + L + + ++I+G G V C + P E
Sbjct: 928 VLKQEIDVVFQENETMVLAVDNI------RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 981
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
+ A G D IK+ +L ++ S GH +VR + + L S +D ++ W+ +
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ- 1040
Query: 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC 352
+G + +TVK D + +++ S D
Sbjct: 1041 -----------------------TGDYVFLQAHQETVK-----DFRLLQDSRLLSWSFDG 1072
Query: 353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-KQWKCPEGKFIQNLPG 411
T+++W++ G+ T H+ +V S A+ F+S S D K W + L G
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1132
Query: 412 HNAIINSICVNNEGVLVS-GADNGTMCFWDWRTG 444
HN + + +G+L++ G DNG + W+ G
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 85/461 (18%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTID--VLITAGRDSTAR 58
+WD ATGKL + Y H VN + +L T D +
Sbjct: 690 IWDSATGKL----------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 59 VWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP 118
+WD+ K T+ GHTN++ + + LL SC
Sbjct: 734 LWDLNQKECRNTMFGHTNSV-------NHCRFSPDDELLASCSAD--------------- 771
Query: 119 SLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178
GT+R W ++ E+ +N++ F+S ++ P + +
Sbjct: 772 -----GTLRLWDVRSANERKSINVKR-------------------FFLSSED--PPEDVE 805
Query: 179 LVPT----TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWF 234
++ +A +II AK K L H L + +GH ++ P +
Sbjct: 806 VIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 862
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE--- 291
+ +++W++ + GH+ V G+ SP + DD+T++ W+ +
Sbjct: 863 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 922
Query: 292 YNKAPVQPGSMD---SESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA---TEESHP 344
N A V +D E+ + DN G +LI + + L + S +
Sbjct: 923 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 982
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEG 403
V G D I++ +L + + HKK+VR + S+S D++ Q W G
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 404 KFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG 444
++ L H + + + L+S + +GT+ W+ TG
Sbjct: 1043 DYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1082
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
V+ H V + A+ ADK ++V+ TG+ L + H V S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
Y+ +C D+ VK W DS +G T+D ++
Sbjct: 677 SYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHF-------- 714
Query: 334 EDDSATEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP 392
+ +H ++ TGS+D ++LWDL + T+ H SV P + AS S
Sbjct: 715 ----TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 393 D 393
D
Sbjct: 771 D 771
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR--GLTVSPR 272
I H V C A + + AT SADK +K+WD ATGKL + H V T
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
H L + +D +K WDL N+ + + + F L + AD T++L+
Sbjct: 720 HLLLATGSNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL 365
++ F G R+ + ADKT++++K + G+ L
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQVFKAE-------------------------TGEKL 657
Query: 366 CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNE 424
+ H+ V A A+ S D +K W GK + H+ +N N+
Sbjct: 658 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 717
Query: 425 G---VLVSGADNGTMCFWD 440
+L +G+++ + WD
Sbjct: 718 SNHLLLATGSNDFFLKLWD 736
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL---------TGHVGSVR 265
+ GH G VRC A ATG + I++W+++ G+L S H G V
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1189
Query: 266 GLTVSPRHPYLFSCG 280
+ SP L S G
Sbjct: 1190 DVCFSPDSKTLVSAG 1204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/454 (20%), Positives = 174/454 (38%), Gaps = 75/454 (16%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIAS---------V 81
GH +SVN P ++L + D T R+WDVR+ ++ ++S +
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 82 VTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP---SLLDFGTIRPW-QLQII--Q 135
V S G K ++ + ++F + T+G L S + + P+ L +I
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 136 EQCF--------LNLQEVQRHS--VHTLVFRS-----LKRTHDMFISCQELVPSTENQLV 180
+ C L + + + H VH ++F L + D I E +N +
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW--------VRCVAVEPGNE 232
+ Q+ + L + + ++I+G G V C + P E
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNI------RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
+ A G D IK+ +L ++ S GH +VR + + L S +D ++ W+ +
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ- 1033
Query: 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC 352
+G + +TVK D + +++ S D
Sbjct: 1034 -----------------------TGDYVFLQAHQETVK-----DFRLLQDSRLLSWSFDG 1065
Query: 353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-KQWKCPEGKFIQNLPG 411
T+++W++ G+ T H+ +V S A+ F+S S D K W + L G
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125
Query: 412 HNAIINSICVNNEGVLVS-GADNGTMCFWDWRTG 444
HN + + +G+L++ G DNG + W+ G
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 85/461 (18%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTID--VLITAGRDSTAR 58
+WD ATGKL + Y H VN + +L T D +
Sbjct: 683 IWDSATGKL----------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 59 VWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP 118
+WD+ K T+ GHTN++ + + LL SC
Sbjct: 727 LWDLNQKECRNTMFGHTNSV-------NHCRFSPDDELLASCSAD--------------- 764
Query: 119 SLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178
GT+R W ++ E+ +N++ F+S ++ P + +
Sbjct: 765 -----GTLRLWDVRSANERKSINVKR-------------------FFLSSED--PPEDVE 798
Query: 179 LVPT----TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWF 234
++ +A +II AK K L H L + +GH ++ P +
Sbjct: 799 VIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE--- 291
+ +++W++ + GH+ V G+ SP + DD+T++ W+ +
Sbjct: 856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915
Query: 292 YNKAPVQPGSMD---SESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA---TEESHP 344
N A V +D E+ + DN G +LI + + L + S +
Sbjct: 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEG 403
V G D I++ +L + + HKK+VR + S+S D++ Q W G
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 404 KFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG 444
++ L H + + + L+S + +GT+ W+ TG
Sbjct: 1036 DYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
V+ H V + A+ ADK ++V+ TG+ L + H V S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
Y+ +C D+ VK W DS +G T+D ++
Sbjct: 670 SYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHF-------- 707
Query: 334 EDDSATEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP 392
+ +H ++ TGS+D ++LWDL + T+ H SV P + AS S
Sbjct: 708 ----TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 393 D 393
D
Sbjct: 764 D 764
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR--GLTVSPR 272
I H V C A + + AT SADK +K+WD ATGKL + H V T
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
H L + +D +K WDL N+ + + + F L + AD T++L+
Sbjct: 713 HLLLATGSNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL 365
++ F G R+ + ADKT++++K + G+ L
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQVFKAE-------------------------TGEKL 650
Query: 366 CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNE 424
+ H+ V A A+ S D +K W GK + H+ +N N+
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 425 G---VLVSGADNGTMCFWD 440
+L +G+++ + WD
Sbjct: 711 SNHLLLATGSNDFFLKLWD 729
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL---------TGHVGSVR 265
+ GH G VRC A ATG + I++W+++ G+L S H G V
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 266 GLTVSPRHPYLFSCG 280
+ SP L S G
Sbjct: 1183 DVCFSPDSKTLVSAG 1197
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 43/258 (16%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
+ C+ E + + TG+ DK I+V+D K L L+GH G V L + L S
Sbjct: 125 ITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGST 181
Query: 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV---KLYKED--- 335
DRTV+ WD++ +S + + ++T D T+ KL KE
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 336 DSATEESHP--------------------------------VITGSHDCTIRLWDLAAGK 363
D E +P V++GS+D T+ +WD+A K
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK 301
Query: 364 SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVN 422
L L+ H + S SAS D I+ W G+ L GH A++ + ++
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS 361
Query: 423 NEGVLVSGADNGTMCFWD 440
++ LVS A +G++ WD
Sbjct: 362 DK-FLVSAAADGSIRGWD 378
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 108/289 (37%), Gaps = 56/289 (19%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
V+D K L L+GH G G+ +++ HG +L++ D T RVW
Sbjct: 146 VYDSINKKFLLQLSGHDG---GVWALKYAHG--------------GILVSGSTDRTVRVW 188
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
D++ + GH N+ + + K ++ S + + V + L S+
Sbjct: 189 DIKKGCCTHVFEGH-NSTVRCLDIVEYKNI--KYIVTGSRDNTLHV-----WKLPKESSV 240
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D G + L F +E F + R H + V N +V
Sbjct: 241 PDHGEEHDYPL------VFHTPEE-------NPYFVGVLRGHXASVRT---VSGHGNIVV 284
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
+ NT I+ A K ++SGH + + + + S D
Sbjct: 285 SGSYDNTLIVWDV-------------AQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
I++WDL G+L +L GH V L +S + +L S D +++ WD
Sbjct: 332 TTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
V+ GH VR V+ GN +GS D + VWD+A K L+GH +
Sbjct: 265 VLRGHXASVRTVSGH-GN-IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER 322
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
S D T++ WDLE + + G+ + S L++ AD +++ +
Sbjct: 323 KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWD 378
Query: 334 EDDSATEESH 343
+D + + S+
Sbjct: 379 ANDYSRKFSY 388
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 367 TLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV 426
TL H SV + Y+ A I+ + KF+ L GH+ + ++ + G+
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 427 LVSGADNGTMCFWDWRTG 444
LVSG+ + T+ WD + G
Sbjct: 176 LVSGSTDRTVRVWDIKKG 193
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S +++ +
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 108
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK + +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 109 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 154
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 155 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 437 CFWD 440
W+
Sbjct: 215 MLWN 218
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K++ TL+
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 233 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 268
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K +YTL+
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + ++I+ RD T +VW
Sbjct: 85 LWDVATGE----------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 129 TIKGQC-LATLLGHNDWVSQV 148
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---- 107
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K ++ S R TI+ W I+ QC L
Sbjct: 108 ---DIDKKASMIISGSRDK--------------------TIKVW---TIKGQCLATL--- 138
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N +++ KA + +
Sbjct: 139 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----KAWNLNQ 179
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 180 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 232
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 233 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 292 GQTLFAGYTDNVIRVWQ 308
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S +++ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK + +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
W+
Sbjct: 221 MLWN 224
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K++ TL+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 239 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K +YTL+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + ++I+ RD T +VW
Sbjct: 91 LWDVATGE----------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 135 TIKGQC-LATLLGHNDWVSQV 154
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---- 113
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K ++ S R TI+ W I+ QC L
Sbjct: 114 ---DIDKKASMIISGSRDK--------------------TIKVW---TIKGQCLATL--- 144
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N +++ KA + +
Sbjct: 145 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----KAWNLNQ 185
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 186 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 239 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S +++ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK + +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
W+
Sbjct: 221 MLWN 224
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K++ TL+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 239 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K +YTL+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + ++I+ RD T +VW
Sbjct: 91 LWDVATGE----------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 135 TIKGQC-LATLLGHNDWVSQV 154
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---- 113
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K ++ S R TI+ W I+ QC L
Sbjct: 114 ---DIDKKASMIISGSRDK--------------------TIKVW---TIKGQCLATL--- 144
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N +++ KA + +
Sbjct: 145 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----KAWNLNQ 185
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 186 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 239 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S +++ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK + +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
W+
Sbjct: 221 MLWN 224
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K++ TL+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 239 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K +YTL+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---- 113
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K ++ S R TI+ W I+ QC L
Sbjct: 114 ---DIDKKASMIISGSRDK--------------------TIKVW---TIKGQCLATL--- 144
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N +++ KA + +
Sbjct: 145 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----KAWNLNQ 185
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 186 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 239 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + ++I+ RD T +VW
Sbjct: 91 LWDVATGE----------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 135 TIKGQC-LATLLGHNDWVSQV 154
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S +++ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK + +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
W+
Sbjct: 221 MLWN 224
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K++ TL+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 239 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K +YTL+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + ++I+ RD T +VW
Sbjct: 91 LWDVATGE----------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 135 TIKGQC-LATLLGHNDWVSQV 154
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---- 113
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K ++ S R TI+ W I+ QC L
Sbjct: 114 ---DIDKKASMIISGSRDK--------------------TIKVW---TIKGQCLATL--- 144
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N +++ KA + +
Sbjct: 145 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----KAWNLNQ 185
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 186 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 239 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 35/266 (13%)
Query: 181 PTTASNTQIIQQAKAKALPM--PKPQWHAPWKLY----RVISGHLGWVRCVAVEPGNEWF 234
P TA T+++ ++ K L P P H+ Y R + GH +V VA+ +
Sbjct: 25 PETA--TKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFA 82
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294
+ S D +++W+L G+ + GH V + SP + + S G D ++ W+++
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK--- 139
Query: 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI 354
G T SR T+ V+ S + ++ +++G D +
Sbjct: 140 ------------GECMHTL----SRGAHTDWVSCVRF-----SPSLDAPVIVSGGWDNLV 178
Query: 355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHN 413
++WDLA G+ + L H V SV + P + AS+ D + + W +G+ + +
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-G 237
Query: 414 AIINSICVN-NEGVLVSGADNGTMCF 438
A IN IC + N + + + G F
Sbjct: 238 APINQICFSPNRYWMCAATEKGIRIF 263
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVIS--GHLGWVRCVAVEPGNEW--FA 235
V + N QI+ + AL + W+ + +S H WV CV P +
Sbjct: 115 VAFSPDNRQIVSGGRDNALRV----WNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 236 TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA 295
+G D ++KVWDLATG+L L GH V +TVSP S D + WDL +A
Sbjct: 171 SGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA 230
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 113/317 (35%), Gaps = 64/317 (20%)
Query: 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS 86
R GH + V+ ++L + ++A D + R+W+++ Y GHT + SV
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQ 146
Q+ V G L R W ++ +C
Sbjct: 121 NRQI---------------VSGGRDNAL------------RVWN---VKGEC-------- 142
Query: 147 RHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWH 206
+HTL + H ++SC PS + ++ + + + A
Sbjct: 143 ---MHTLS----RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG--------- 186
Query: 207 APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266
+L + GH +V V V P A+ D + ++WDL G+ LS +
Sbjct: 187 ---RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE-ALSEMAAGAPINQ 242
Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNK-----APVQPGSMDSESGIFSMTFDNSGSRLI 321
+ SP Y ++ ++ +DLE AP GS S+ + GS L
Sbjct: 243 ICFSPNR-YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLY 301
Query: 322 TTEADKTVKLYKEDDSA 338
+ D ++++ ++A
Sbjct: 302 SGYTDNVIRVWGVSENA 318
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 16/62 (25%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VWDLATG+L L GH V +TV P + ++ +D AR+W
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTV----------------SPDGSLCASSDKDGVARLW 223
Query: 61 DV 62
D+
Sbjct: 224 DL 225
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
L + GH GWV +A G + S DK + W L K S GH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ T++ Y S D+T++ WD+ +G F S + + +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVXSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
DK ++ +I+GS D TI++W + G+ L TL H V V + P
Sbjct: 115 IDK-------------KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
++ + ++ + +K W + + + GHN+ IN++ + +G L++ A +G +
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
W+
Sbjct: 221 XLWN 224
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 21/217 (9%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R GH V+ + + + S DK +++WD+ATG+ GH V + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITTEADKTV 329
+ S D+T+K W ++ G D S + + D+ +I+ DK V
Sbjct: 119 ASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 330 KLYK------EDD-----------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K + E D +A+ + + + D I LW+LAA K+ TL+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
+ V S+A P Y A+A+ IK + + +L
Sbjct: 239 E-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGH 74
+ GH S++NT++ P ++ +AG+D +W++ K YTL+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WD+ATG+ + + GH S V ++ + +I+ RD T +VW
Sbjct: 91 LWDVATGE----------------TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 61 DVRTKANVYTLTGHTNTIASV 81
++ + + TL GH + ++ V
Sbjct: 135 TIKGQC-LATLLGHNDWVSQV 154
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 109/317 (34%), Gaps = 69/317 (21%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
+R + GH V +L ++A D T R+WDV T GH + + SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV---- 113
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
+ K + S R TI+ W I+ QC L
Sbjct: 114 ---DIDKKASXIISGSRDK--------------------TIKVW---TIKGQCLATL--- 144
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVP---STENQLVPTTASNTQIIQQAKAKALPMPK 202
H+ ++S +VP + ++ + +A N + + KA + +
Sbjct: 145 --------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV-----KAWNLNQ 185
Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
Q A GH + + P A+ D I +W+LA K +L+
Sbjct: 186 FQIEAD------FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-D 238
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPG----SMDSESGIFSMTFDNS 316
V L SP Y + +K + L+ Y ++P S +E S+ +
Sbjct: 239 EVFSLAFSPNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 317 GSRLITTEADKTVKLYK 333
G L D +++++
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 108/279 (38%), Gaps = 28/279 (10%)
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
Q + R + H+ +++ P + ++ + T I+ + PQ
Sbjct: 21 QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ- 79
Query: 206 HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
R + GH +V V + ++ +GS D +++WDL TG GH V
Sbjct: 80 -------RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 132
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ S + + S D+T+K W+ L K VQ S + ++S +++
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 325 ADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCT 367
DK VK++ + + +H +G D LWDL GK L T
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252
Query: 368 LTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFI 406
L + + ++ P Y +A+ +IK W EGK I
Sbjct: 253 L-DGGDIINALCFSPNRYWLCAATGPSIKIWDL-EGKII 289
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 211 LYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSV 264
L + GH GWV +A P + + S DK I +W L G + +L GH V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ +S + S D T++ WDL + + + S+ F + ++++
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 325 ADKTVKLYK---------EDDSATE----------ESHPVITG-SHDCTIRLWDLAAGKS 364
DKT+KL+ +D+S +E S+P+I D +++W+LA K
Sbjct: 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHNAIINSICVNN 423
H + +V + P + AS D W EGK + L G + IIN++C +
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP 266
Query: 424 EGVLVSGADNGTMCFWD 440
+ A ++ WD
Sbjct: 267 NRYWLCAATGPSIKIWD 283
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 92/266 (34%), Gaps = 61/266 (22%)
Query: 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS 86
R GH V+ + + ++ D T R+WD+ T GHT + SV +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQ 146
Q+ V G+ TI+ W N V
Sbjct: 140 NRQI---------------VSGSRD------------KTIKLW-----------NTLGVC 161
Query: 147 RHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWH 206
+++V +H ++SC P++ N ++ + + + W+
Sbjct: 162 KYTVQ-------DESHSEWVSCVRFSPNSSNPIIVSCGWDKLV-------------KVWN 201
Query: 207 -APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
A KL GH G++ V V P A+G D +WDL GK +L G +
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN 260
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLE 291
L SP Y ++K WDLE
Sbjct: 261 ALCFSPNR-YWLCAATGPSIKIWDLE 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VW+LA KLK T H+G H +NT+++ P + + G+D A +W
Sbjct: 199 VWNLANCKLK---TNHIG-------------HTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 61 DVRTKANVYTLTG 73
D+ ++YTL G
Sbjct: 243 DLNEGKHLYTLDG 255
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 28/272 (10%)
Query: 153 LVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLY 212
+ R + H+ +++ P + ++ + T I+ + PQ
Sbjct: 5 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-------- 56
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R + GH +V V + ++ +GS D +++WDL TG GH V + S
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 273 HPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKL 331
+ + S D+T+K W+ L K VQ S + ++S +++ DK VK+
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 332 YKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374
+ + + +H +G D LWDL GK L TL +
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 235
Query: 375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFI 406
+ ++ P Y +A+ +IK W EGK I
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDL-EGKII 266
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 211 LYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSV 264
L + GH GWV +A P + + S DK I +W L G + +L GH V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ +S + S D T++ WDL + + + S+ F + ++++
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 325 ADKTVKLYK---------EDDSATE----------ESHPVITG-SHDCTIRLWDLAAGKS 364
DKT+KL+ +D+S +E S+P+I D +++W+LA K
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHNAIINSICVNN 423
H + +V + P + AS D W EGK + L G + IIN++C +
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP 243
Query: 424 EGVLVSGADNGTMCFWD 440
+ A ++ WD
Sbjct: 244 NRYWLCAATGPSIKIWD 260
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 90/265 (33%), Gaps = 59/265 (22%)
Query: 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS 86
R GH V+ + + ++ D T R+WD+ T GHT + SV +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQ 146
Q+ V G+ TI+ W N V
Sbjct: 117 NRQI---------------VSGSRD------------KTIKLW-----------NTLGVC 138
Query: 147 RHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWH 206
+++V +H ++SC P++ N ++ + + + A
Sbjct: 139 KYTVQ-------DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------- 182
Query: 207 APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266
KL GH G++ V V P A+G D +WDL GK +L G +
Sbjct: 183 ---KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINA 238
Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLE 291
L SP Y ++K WDLE
Sbjct: 239 LCFSPNR-YWLCAATGPSIKIWDLE 262
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VW+LA KLK T H+G H +NT+++ P + + G+D A +W
Sbjct: 176 VWNLANCKLK---TNHIG-------------HTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 61 DVRTKANVYTLTG 73
D+ ++YTL G
Sbjct: 220 DLNEGKHLYTLDG 232
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 26/242 (10%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R ++GH +V V + ++ +GS D +++WDLA G GH V + S
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 273 HPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKL 331
+ + S DRT+K W+ L K + G + + F
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF------------------ 525
Query: 332 YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
S +++ S D T+++W+L+ K TL H V +VA+ P + AS
Sbjct: 526 -----SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580
Query: 392 PDNIK-QWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL 450
D + W EGK + +L N++I+++C + + A + WD + + L
Sbjct: 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Query: 451 QV 452
+V
Sbjct: 640 KV 641
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 166 ISCQELVPSTENQL-VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRC 224
+S + V T++ L V + N QI+ ++ + + + + + GH WV C
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
Query: 225 VAVEPG--NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD 282
V P + S DK +KVW+L+ KL+ +L GH G V + VSP S G D
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
Query: 283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTF 313
V WDL K + S+++ S I ++ F
Sbjct: 583 GVVLLWDLAEGK---KLYSLEANSVIHALCF 610
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 125/335 (37%), Gaps = 67/335 (20%)
Query: 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS 86
R GH V + L ++ D R+WD+ + GHT + SV
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQ 146
Q ++ S +R + + T G +C + E
Sbjct: 484 NRQ-----IVSASRDRTIKLWNTLG-------------------------ECKYTISEGG 513
Query: 147 RHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWH 206
H ++SC P N L PT I+ + K + + W+
Sbjct: 514 EG-------------HRDWVSCVRFSP---NTLQPT------IVSASWDKTVKV----WN 547
Query: 207 -APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
+ KL ++GH G+V VAV P A+G D ++ +WDLA GK SL + +
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIH 606
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
L SP Y + +K WDLE +K+ V+ +D ++ + DNSG A
Sbjct: 607 ALCFSPNR-YWLCAATEHGIKIWDLE-SKSIVEDLKVDLKAE--AEKADNSGP-----AA 657
Query: 326 DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA 360
K +Y + + + + +G D IR+W +
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VW+L+ KL+ +L GH G V +T+++ P + + G+D +W
Sbjct: 545 VWNLSNCKLRSTLAGHTGYV----------------STVAVSPDGSLCASGGKDGVVLLW 588
Query: 61 DVRTKANVYTLTGHT 75
D+ +Y+L ++
Sbjct: 589 DLAEGKKLYSLEANS 603
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 26/207 (12%)
Query: 228 EPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285
+ +E TGS D ++KVW +L L SL GH V + +S P S D +
Sbjct: 45 KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104
Query: 286 KCWDLEYNK--APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES- 342
+ WDLE K + G +D+ +++ F L T V ++ + E S
Sbjct: 105 RLWDLENGKQIKSIDAGPVDA----WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 343 ----------------HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYM 386
+ +G+ D I ++D+A GK L TL H +RS+ P +
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220
Query: 387 FASASPDN-IKQWKCPEGKFIQNLPGH 412
+AS D IK + L GH
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGH 247
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
+ +A P ++ A+G+ D II ++D+ATGKL +L GH +R LT SP L + D
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 282 DRTVKCWDLEY 292
D +K +D+++
Sbjct: 227 DGYIKIYDVQH 237
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
KL + GH +R + P ++ T S D IK++D+ L +L+GH V +
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
P + S D++VK WD+ + V D + ++ + ++ +GS++++ D+ +
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVG-TRTCVHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314
Query: 330 KLY 332
+Y
Sbjct: 315 HIY 317
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 166 ISCQELVPSTENQLVP----TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW 221
I+ +L+ + E +P T + ++Q++ A HA L +SGH W
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGHASW 250
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
V VA P + F + S+DK +KVWD+ T + H V G+ + + S GD
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310
Query: 282 DRTVKCWD 289
D+ + +D
Sbjct: 311 DQEIHIYD 318
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 26/107 (24%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTV--------------------IRHYH------GHLS 34
++D+ATGKL +L GH +R LT ++H + GH S
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
V ++ P +++ D + +VWDV T+ V+T H + + V
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 40/251 (15%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
R + GH G V + P W + S D + VW+ T + ++ H
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC----------- 108
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMT--FDNSG----SRLITTEAD 326
P++ C N V G +DS IF+++ D G SR++T
Sbjct: 109 -PWVMECA---------FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG 158
Query: 327 KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-----TNHKKSVRSVALH 381
D T +ITGS D T LWD+ G+ + + H V S++++
Sbjct: 159 YASSCQYVPDQETR----LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 382 P-TLYMFASASPD-NIKQWKCP-EGKFIQNLPGHNAIINSICVNNEGV-LVSGADNGTMC 437
MF S S D ++ W + ++ GH INS+ +G +G+D+GT
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Query: 438 FWDWRTGYNFQ 448
+D RTG+ Q
Sbjct: 275 LFDMRTGHQLQ 285
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT 64
+R YHGH +N++ P T D T R++D+RT
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHP-TIDVLITAGRDSTARV 59
+WD+ TG+ ++S+ G GH + V ++S++ ++ I+ D+T R+
Sbjct: 184 LWDVTTGQ-RISIFGS----------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 60 WDVR-TKANVYTLTGHTNTIASV 81
WD+R T V T GH I SV
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSV 255
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKL------SLTGHVG 262
+ R GH G + V P + F TGS D +++D+ TG +L++ +
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS--ESGIFSMTFDNSGSRL 320
V + S LF+ + WD + + G++ + E I + + GS L
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 321 ITTEADKTVKLY 332
T DK +K++
Sbjct: 360 CTGSWDKNLKIW 371
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 45/235 (19%)
Query: 209 WKLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVR 265
W V+S GH VR VA P + A+ S D +W + +L GH V+
Sbjct: 50 WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES-GIFSMTFDNSGSRLITTE 324
+ +P L +C D++V W+++ ++S + + + + S L +
Sbjct: 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL 384
D TVKLY+E EE V TL H+ +V S+A P+
Sbjct: 170 YDDTVKLYRE-----EEDDWVCCA------------------TLEGHESTVWSLAFDPSG 206
Query: 385 YMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCF 438
AS S D ++ W+ Q LPG N +GV SG+D C
Sbjct: 207 QRLASCSDDRTVRIWR-------QYLPG----------NEQGVACSGSDPSWKCI 244
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 33/227 (14%)
Query: 223 RC--VAVEPGNEWFATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPRHPYL 276
RC +A P A+ D+ I++W D K LS GH +VR + SP YL
Sbjct: 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYL 76
Query: 277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD 336
S D T W + E+ + S+ + SG+ L T DK+V +++ D+
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-I 395
E+ + ++ L +H + V+ V HP+ + ASAS D+ +
Sbjct: 137 ---EDEYECVS-------------------VLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 396 KQWKCPEGKFI--QNLPGHNAIINSICVNNEGV-LVSGADNGTMCFW 439
K ++ E ++ L GH + + S+ + G L S +D+ T+ W
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSP 271
V++ H V+ V P E A+ S D +K++ +L GH +V L P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 272 RHPYLFSCGDDRTVKCWD--LEYNKAPVQPGSMDSE-------SG-----IFSMTFDNSG 317
L SC DDRTV+ W L N+ V D SG I+ + +
Sbjct: 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT 264
Query: 318 SRLITTEADKTVKLYKED 335
L T D +++++ED
Sbjct: 265 GALATACGDDAIRVFQED 282
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKAN---VYTLTGHTNTIASVVTQAS 86
GH + V +++ P+ ++L T RD + VW+V + V L HT + VV S
Sbjct: 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Query: 87 E 87
+
Sbjct: 162 Q 162
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTLTGHTNTIASVV 82
GH +V ++ P + L +A D+T +W V TL GH N + SV
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
H G V +++ P F +G+ D K+WD+ G + + TGH + + P
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
+ DD T + +DL ++ + + GI S++F SG L+ +A
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
D+ L D+ T++ V TGS D +++W+
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
+ + ++T S D T LWD+ G+ T T H V S++L P +F S + D + K W
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
EG Q GH + IN+IC N +G+D+ T +D R
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
++ R ++GH G++ C N+ T S D +WD+ TG+ + TGH G V L++
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 203
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+P S D + K WD+ + + ES I ++ F +G
Sbjct: 204 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNG------------ 249
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMF 387
+ TGS D T RL+DL A + L T + N + SV+ + +
Sbjct: 250 -------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 388 ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ D N W + L GH+ ++ + V ++G+ V+
Sbjct: 297 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 339
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H V ++SL P + ++ D++A++WDVR T TGH + I ++
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVT 83
+ GH S +N I P + T D+T R++D+R + T + H N I + +
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 286
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
V++GH V C+ V ATGS D +K+W+
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
H G V +++ P F +G+ D K+WD+ G + + TGH + + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
+ DD T + +DL ++ + + GI S++F SG L+ +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
D+ L D+ T++ V TGS D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
+ + ++T S D T LWD+ G+ T T H V S++L P +F S + D + K W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
EG Q GH + IN+IC N +G+D+ T +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
++ R ++GH G++ C N+ T S D +WD+ TG+ + TGH G V L++
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+P S D + K WD+ + + ES I ++ F +G
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNG------------ 238
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMF 387
+ TGS D T RL+DL A + L T + N + SV+ + +
Sbjct: 239 -------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 388 ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ D N W + L GH+ ++ + V ++G+ V+
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H V ++SL P + ++ D++A++WDVR T TGH + I ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVT 83
+ GH S +N I P + T D+T R++D+R + T + H N I + +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
V++GH V C+ V ATGS D +K+W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
H G V +++ P F +G+ D K+WD+ G + + TGH + + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
+ DD T + +DL ++ + + GI S++F SG L+ +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
D+ L D+ T++ V TGS D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
+ + ++T S D T LWD+ G+ T T H V S++L P +F S + D + K W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
EG Q GH + IN+IC N +G+D+ T +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
++ R ++GH G++ C N+ T S D +WD+ TG+ + TGH G V L++
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+P S D + K WD+ + + ES I ++ F +G
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNG------------ 238
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMF 387
+ TGS D T RL+DL A + L T + N + SV+ + +
Sbjct: 239 -------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 388 ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ D N W + L GH+ ++ + V ++G+ V+
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H V ++SL P + ++ D++A++WDVR T TGH + I ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVT 83
+ GH S +N I P + T D+T R++D+R + T + H N I + +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
V++GH V C+ V ATGS D +K+W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
H G V +++ P F +G+ D K+WD+ G + + TGH + + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
+ DD T + +DL ++ + + GI S++F SG L+ +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
D+ L D+ T++ V TGS D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
+ + ++T S D T LWD+ G+ T T H V S++L P +F S + D + K W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
EG Q GH + IN+IC N +G+D+ T +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
++ R ++GH G++ C N+ T S D +WD+ TG+ + TGH G V L++
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+P S D + K WD+ + + ES I ++ F +G
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNG------------ 238
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMF 387
+ TGS D T RL+DL A + L T + N + SV+ + +
Sbjct: 239 -------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 388 ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ D N W + L GH+ ++ + V ++G+ V+
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H V ++SL P + ++ D++A++WDVR T TGH + I ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVT 83
+ GH S +N I P + T D+T R++D+R + T + H N I + +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
V++GH V C+ V ATGS D +K+W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
H G V +++ P F +G+ D K+WD+ G + + TGH + + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
+ DD T + +DL ++ + + GI S++F SG L+ +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
D+ L D+ T++ V TGS D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
+ + ++T S D T LWD+ G+ T T H V S++L P +F S + D + K W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
EG Q GH + IN+IC N +G+D+ T +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
++ R ++GH G++ C N+ T S D +WD+ TG+ + TGH G V L++
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+P S D + K WD+ + + ES I ++ F +G
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNG------------ 238
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMF 387
+ TGS D T RL+DL A + L T + N + SV+ + +
Sbjct: 239 -------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 388 ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ D N W + L GH+ ++ + V ++G+ V+
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H V ++SL P + ++ D++A++WDVR T TGH + I ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVT 83
+ GH S +N I P + T D+T R++D+R + T + H N I + +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
V++GH V C+ V ATGS D +K+W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
K + H V C++ P +E+ ATGSADK + +WDL KLKL S H + +
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
SP + L S G DR + WDL +K + + D+E G + F + G
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 376
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 255 LSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES------- 306
L L GH GL+ +P + YL S DD T+ WD+ N P + +D+++
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI--NATPKEHRVIDAKNIFTGHTA 232
Query: 307 ------------GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE----------SHP 344
+F D+ + T + T K D+ T E
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 345 VITGSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHP 382
+ TGS D T+ LWDL K L + +HK + V P
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K +++ H + I V
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
K + H V C++ P +E+ ATGSADK + +WDL KLKL S H + +
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
SP + L S G DR + WDL +K + + D+E G + F + G
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 378
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 255 LSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES------- 306
L L GH GL+ +P + YL S DD T+ WD+ N P + +D+++
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI--NATPKEHRVIDAKNIFTGHTA 234
Query: 307 ------------GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE----------SHP 344
+F D+ + T + T K D+ T E
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 345 VITGSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHP 382
+ TGS D T+ LWDL K L + +HK + V P
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K +++ H + I V
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
K + H V C++ P +E+ ATGSADK + +WDL KLKL S H + +
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
SP + L S G DR + WDL +K + + D+E G + F + G
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 380
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 255 LSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES------- 306
L L GH GL+ +P + YL S DD T+ WD+ N P + +D+++
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI--NATPKEHRVIDAKNIFTGHTA 236
Query: 307 ------------GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE----------SHP 344
+F D+ + T + T K D+ T E
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 345 VITGSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHP 382
+ TGS D T+ LWDL K L + +HK + V P
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K +++ H + I V
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
K ++ H V C++ P +E+ ATGSADK + +WDL KLKL + H + +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
SP + L S G DR + WDL +K + + D+E G + F + G
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDL--SKIGEEQSAEDAEDGPPELLFIHGG 374
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 87/236 (36%), Gaps = 55/236 (23%)
Query: 255 LSLTGHVGSVRGLT-VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES------- 306
L L GH GL+ S +L S DD TV WD+ N P + +D+++
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI--NAGPKEGKIVDAKAIFTGHSA 230
Query: 307 ------------GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE----------SHP 344
+F D+ + T ++ T K D+ T E
Sbjct: 231 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 345 VITGSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSV--ALHPTLYMFASASPDNIKQWKC- 400
+ TGS D T+ LWDL K L T +HK + V + H + +S + + W
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 401 ---------------PEGKFIQNLPGHNAIINSICVN-NEG-VLVSGADNGTMCFW 439
PE FI GH A I+ N NE V+ S +++ M W
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K ++T H + I V
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
K ++ H V C++ P +E+ ATGSADK + +WDL KLKL + H + +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
SP + L S G DR + WDL +K + + D+E G + F + G
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDL--SKIGEEQSAEDAEDGPPELLFIHGG 374
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 54/156 (34%), Gaps = 32/156 (20%)
Query: 236 TGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKC 287
+ S D + +WD+ G K TGH V + H LF S DD+ +
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXI 256
Query: 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT 347
WD N +D+ + + N S I + T
Sbjct: 257 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI-----------------------LAT 293
Query: 348 GSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHP 382
GS D T+ LWDL K L T +HK + V P
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K ++T H + I V
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 215 ISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPR 272
+ H V C++ P +E+ ATGSADK + +WDL KLKL S H + + SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 273 HP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
+ L S G DR + WDL +K + D+E G + F + G
Sbjct: 329 NETILASSGTDRRLNVWDL--SKIGEEQSPEDAEDGPPELLFIHGG 372
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 87/233 (37%), Gaps = 54/233 (23%)
Query: 236 TGSADKIIKVWDLAT----GKL---KLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKC 287
+ S D I +WD++ GK+ K TGH V ++ H LF S DD+ +
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMI 254
Query: 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT 347
WD N S+D+ + + N S I + T
Sbjct: 255 WDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI-----------------------LAT 291
Query: 348 GSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHP-TLYMFASASPD---------NIK 396
GS D T+ LWDL K L + +HK + V P + AS+ D I
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 397 QWKCPEGK--------FIQNLPGHNAIINSICVN-NEG-VLVSGADNGTMCFW 439
+ + PE FI GH A I+ N NE V+ S +++ M W
Sbjct: 352 EEQSPEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASV 81
H + VN +S +P + +L T D T +WD+R K +++ H + I V
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 87/233 (37%), Gaps = 39/233 (16%)
Query: 178 QLVPTTASNTQIIQQAKAKA-LPMPKPQWHAPW-------KLYR-VISGHLGWVRCVAVE 228
QL +++ QQAK +A + + W L R V+ H V
Sbjct: 571 QLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFS 630
Query: 229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288
+ A+ ADK ++V+ TG+ L + H V S ++ +C D+ VK W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI-- 346
+ S +G T+D ++ T SH ++
Sbjct: 691 N--------------SMTGELVHTYDEHSEQVNCCHF-------------TNSSHHLLLA 723
Query: 347 TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQW 398
TGS DC ++LWDL + T+ H SV P + AS S D +K W
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 234 FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
ATGS+D +K+WDL + + ++ GH SV SP L SC D T+K WD
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 31/225 (13%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
V C + P ++ A G + I++ +L ++ S H +V + + L S D
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE 341
D ++ W+ + +K G E K +L K
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQ---------------------ETVKDFRLLK-------- 1060
Query: 342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-KQWKC 400
+ +++ S D T+++W++ G H+ +V S + F+S S D K W
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 401 PEGKFIQNLPGHNAIINSICVN-NEGVLVSGADNGTMCFWDWRTG 444
+ L GHN + + + +L +G DNG + W+ G
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG 1165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/442 (19%), Positives = 154/442 (34%), Gaps = 79/442 (17%)
Query: 25 VIRHYHGHLSSVN----TISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIAS 80
++ Y H VN T S H + L T D ++WD+ K T+ GHTN++
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLL--LATGSSDCFLKLWDLNQKECRNTMFGHTNSV-- 752
Query: 81 VVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQE---- 136
+ + LL SC GT++ W E
Sbjct: 753 -----NHCRFSPDDKLLASCSAD--------------------GTLKLWDATSANERKSI 787
Query: 137 ---QCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA 193
Q FLNL++ Q ++ + C +A +I+ A
Sbjct: 788 NVKQFFLNLEDPQE-------------DMEVIVKC-----------CSWSADGARIMVAA 823
Query: 194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL 253
K K H L + +GH ++ P N + +++W+ +
Sbjct: 824 KNKIFLF---DIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE---YNKAPVQPGSMD---SESG 307
GH+ V G+ SP + DD+T++ W+ + N A + +D E+
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 308 IFSMTFDNSGS-RLITTEADKTVKLYKEDDSA---TEESHPVITGSHDCTIRLWDLAAGK 363
+ + D+ +LI + L + S + + G + I + +L +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 364 SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVN 422
+ HKK+V + S+S D I+ W K I L GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLL 1059
Query: 423 NEGVLVSGADNGTMCFWDWRTG 444
L+S + +GT+ W+ TG
Sbjct: 1060 KNSRLLSWSFDGTVKVWNIITG 1081
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-----KLSLTG---HVGSVRG 266
+ GH G VRC A + ATG + I++W+++ G+L LS G H G V
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 267 LTVSPRHPYLFSCG 280
L SP L S G
Sbjct: 1189 LCFSPDGKMLISAG 1202
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 122/325 (37%), Gaps = 43/325 (13%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT--KANVYTLTGHTNTIASVVTQASEP 88
GHLS V+ + P +T+ D T R+W+ + K + L + VV Q +E
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD----VVFQENEV 941
Query: 89 QVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQII---QEQCFLNLQEV 145
V + ++ R+ + G G + + + + P LQ I E + + E+
Sbjct: 942 MV----LAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP-HLQYIAFGDENGAIEILEL 996
Query: 146 QRHSVHTLVFRSLKRT-HDMFISCQELVPSTENQLVPTTASNTQIIQ-------QAKAKA 197
+ + F+ K H F + ++ + S+ + N Q+ + Q K
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDD-AEIQVWNWQLDKCIFLRGHQETVKD 1055
Query: 198 LPMPKPQWHAPW------KLYRVISG--------HLGWVRCVAVEPGNEWFATGSADKII 243
+ K W K++ +I+G H G V + F++ SADK
Sbjct: 1056 FRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-----APVQ 298
K+W L GH G VR S L + D+ ++ W++ + AP+
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS 1175
Query: 299 PGSMDSESG-IFSMTFDNSGSRLIT 322
+ G + + F G LI+
Sbjct: 1176 EEGAATHGGWVTDLCFSPDGKMLIS 1200
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 210 KLYRVISGHLGWVRCVAVEP---GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266
+L + GH V C+ + P GN F +G DK VWD+ +G+ + H V
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNT-FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITT 323
+ P S DD T + +DL +A + ES IF S+ F SG RL+
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDL---RADREVAIYSKESIIFGASSVDFSLSG-RLL-- 299
Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
G +D TI +WD+ G + L H+ V ++ + P
Sbjct: 300 ----------------------FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 384 LYMFASASPDN 394
F S S D+
Sbjct: 338 GTAFCSGSWDH 348
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 35/234 (14%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
+ ++ H ++ + + T S D +WD+ +G+L S GH V L ++P
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 273 HP--YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTV 329
S G D+ WD+ SG F+ T E+D +V
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMR--------------SGQCVQAFE-------THESDVNSV 246
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL---YM 386
+ Y D+ +GS D T RL+DL A + + + + ++ +L +
Sbjct: 247 RYYPSGDA-------FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299
Query: 387 FASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFW 439
FA + I W +G + L GH ++++ V+ +G SG+ + T+ W
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 23/207 (11%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
K R + GH V C+ + S D + VWD T + ++T V
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS----ESGIFSMTFDNSGSRLITTEA 325
+P + G D + L ++K S + + + +F NS +++T
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 326 DKTVKLYKE-------------------DDSATEESHPVITGSHDCTIRLWDLAAGKSLC 366
D T L+ D + +E + ++G D +WD+ +G+ +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 367 TLTNHKKSVRSVALHPTLYMFASASPD 393
H+ V SV +P+ FAS S D
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDD 261
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHP--TIDVLITAGRDSTAR 58
+WD+ +G+L ++ +HGH + V + L P T + ++ G D A
Sbjct: 180 LWDVESGQL----------------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 59 VWDVRTKANVYTLTGHTNTIASV 81
VWD+R+ V H + + SV
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSV 246
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 209 WKLY------------RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS 256
WKLY + ++GH +V +A+ N + + S DK +++WDL TG
Sbjct: 54 WKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR 113
Query: 257 LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290
GH V + SP + + S G +R +K W++
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 55/270 (20%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
GH V+ ++L I++ D T R+WD+RT GH + + SV Q+
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSV 150
L G R +L I +C + E
Sbjct: 134 ------------------------------LSAGAEREIKLWNILGECKFSSAE------ 157
Query: 151 HTLVFRSLKRTHDMFISCQELVP--STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAP 208
K H ++SC P + N++ P + + K W+
Sbjct: 158 --------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV-------WNTN 202
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
+++ H V +++ P ++ ATG DK + +WD+ ++ +
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 269 VSPRHPYLFSCGDDRTVKCWDL-EYNKAPV 297
+P+ ++ + G D+ VK ++L +KAPV
Sbjct: 263 FNPKLQWV-AVGTDQGVKIFNLMTQSKAPV 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 289 DLEYNKAPVQPGSMDSESGI---FSMTFDNSGSRLITTEADKTV---KLYKEDDSA---- 338
D++ K + G D + I FS + LI+ DKTV KLY+E+ +
Sbjct: 8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI 67
Query: 339 -----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH 381
++E+ I+ S D T+RLWDL G + H+ V SVA
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 382 PTLYMFASASPD-NIKQW 398
P SA + IK W
Sbjct: 128 PDNRQILSAGAEREIKLW 145
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 26 IRH-YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDV 62
IR+ + H S+VN +S+ P + T G+D +WD+
Sbjct: 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 409 LPGHNAIINSICVNNEGVL-VSGADNGTMCFWDWRTGYNFQRL 450
L GHN ++ + ++ E +S + + T+ WD RTG ++R
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF 114
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 16/62 (25%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
+WDL TG T + + GH S V +++ P +++AG + ++W
Sbjct: 102 LWDLRTG----------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 61 DV 62
++
Sbjct: 146 NI 147
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 48/265 (18%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVW---DLATGKLKLSL----TGHVGSVRGLTVSPRHP 274
+R VA P A GS D + +W + A ++ L GH V+G+ S
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE--SGIFSMTFDNSGSRLITTEADKTVKLY 332
YL +C D++V W+ + + + S+ E + + + S + L ++ D TV+++
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 333 KEDD---------------------SATEESHPVITGSHDCTIRLWDLAAGKS------L 365
K+ D TE + +GS D T+R+W +
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240
Query: 366 CTL---TNHKKSVRSVALHPTLYMFASASPDNI--------KQWKCPEGKFIQNLPGHNA 414
C HK+ V +VA + AS D + +WK + + +
Sbjct: 241 CEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299
Query: 415 IINSICVNNEGVLVSGADNGTMCFW 439
++ + +N + +L +G D+G + FW
Sbjct: 300 VVKWLELNGKTILATGGDDGIVNFW 324
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
F TG AD ++K+W D T L+ +L GH VR + SP YL S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
W + + P + + E ++ ++ SG+ L + D V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 49/207 (23%)
Query: 234 FATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHP----YLFSCGDDRTVKC 287
AT S+DK IK++++ T KL +LTGH G V V HP L SC D V
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKFGTILASCSYDGKVLI 81
Query: 288 WDLEYNK-------------------APVQPGSM----DSESGIFSMTFDNSG------- 317
W E + AP + G + S+ + + F +G
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141
Query: 318 -SRLITTEADKTVKLYKEDD---SATEESHPVITGSHDCTIRLWDLAAGKSL----CTLT 369
+ I + E+D + T+ES +TG D +++W + TL
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 370 NHKKSVRSVALHPTLYM---FASASPD 393
H VR VA PT+ + AS S D
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQD 228
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
F TG AD ++K+W D T L+ +L GH VR + SP Y+ S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
W + + P + + E ++ ++ SG+ L + D V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 80/207 (38%), Gaps = 49/207 (23%)
Query: 234 FATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHP----YLFSCGDDRTVKC 287
AT S+DK IK++++ T KL +LTGH G V V HP L SC D V
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKFGTILASCSYDGKVMI 81
Query: 288 WDLEYNK-------------------APVQPGSM----DSESGIFSMTFDNSG------- 317
W E + AP + G M S+ + + F +G
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII 141
Query: 318 -SRLITTEADKTVKLYKEDD---SATEESHPVITGSHDCTIRLWDLAAGKSL----CTLT 369
+ I + E+D + T+ES +TG D +++W + TL
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 370 NHKKSVRSVALHPTLYM---FASASPD 393
H VR VA PT+ + AS S D
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYMASVSQD 228
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
F TG AD ++K+W D T L+ +L GH VR + SP YL S DRT
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
W + + P + + E ++ ++ SG+ L + D V L+KE+
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 49/207 (23%)
Query: 234 FATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHP----YLFSCGDDRTVKC 287
AT S+DK IK++++ T KL +LTGH G V V HP L SC D V
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKFGTILASCSYDGKVLI 83
Query: 288 WDLEYNK-------------------APVQPGSM----DSESGIFSMTFDNSG------- 317
W E + AP + G + S+ + + F +G
Sbjct: 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 143
Query: 318 -SRLITTEADKTVKLYKEDD---SATEESHPVITGSHDCTIRLWDLAAGKSL----CTLT 369
+ I + E+D + T+ES +TG D +++W + TL
Sbjct: 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203
Query: 370 NHKKSVRSVALHPTLYM---FASASPD 393
H VR VA PT+ + AS S D
Sbjct: 204 GHSDWVRDVAWSPTVLLRSYLASVSQD 230
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
F TG AD ++K+W D T L+ +L GH VR + SP YL S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSESG---IFSMTFDNSGSRLITTEADKTVKLYKED 335
W + + P + + E ++ ++ SG+ L + D V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 49/207 (23%)
Query: 234 FATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHP----YLFSCGDDRTVKC 287
AT S+DK IK++++ T KL +LTGH G V V HP L SC D V
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKFGTILASCSYDGKVLI 81
Query: 288 WDLEYNK-------------------APVQPGSM----DSESGIFSMTFDNSG------- 317
W E + AP + G + S+ + + F +G
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141
Query: 318 -SRLITTEADKTVKLYKEDD---SATEESHPVITGSHDCTIRLWDLAAGKSL----CTLT 369
+ I + E+D + T+ES +TG D +++W + TL
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 370 NHKKSVRSVALHPTLYM---FASASPD 393
H VR VA PT+ + AS S D
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQD 228
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 27/234 (11%)
Query: 221 WVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHPYLFS 278
++R + P G + +WDLA T ++K LT + L +SP FS
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 279 CGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD 336
C D + WDL +N+ V+ G D S I N G++L T D TV+ + +
Sbjct: 159 CCSDGNIAVWDL-HNQTLVRQFQGHTDGASCI---DISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 337 SATEESHPV---ITGSHDCTIRLWDLAAG---KSLCTLTNHKKSVRSVALHPTLYM---- 386
+ H I C W LA G ++ L +K + LH + +
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 387 ------FASASPDN-IKQWKCPEGKFI-QNLPGHNAIINSICVNNEGVLVSGAD 432
F S DN + W+ P G I Q+ + + I V+++ ++ D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVR 63
T++R + GH + I + L T G D+T R WD+R
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
Query: 211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS 270
L R GH C+ + TG D ++ WDL G+ +L + L
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYC 233
Query: 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330
P +L + V+ L NK P + ES + S+ F G ++T D +
Sbjct: 234 PTGEWLAVGMESSNVEV--LHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 331 LYK 333
++
Sbjct: 291 AWR 293
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
F TG AD ++K+W D T L+ +L GH VR + SP Y S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
W + + P + + E ++ ++ SG+ L + D V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 79/206 (38%), Gaps = 49/206 (23%)
Query: 235 ATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHP----YLFSCGDDRTVKCW 288
AT S+DK IK++++ T KL +LTGH G V V HP L SC D V W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWAHPKFGTILASCSYDGKVXIW 82
Query: 289 DLEYNK-------------------APVQPG------SMDSESGIFSMTFDNSGSRLI-- 321
E + AP + G S D + + + + S +I
Sbjct: 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIID 142
Query: 322 -----TTEADKTVKLYKEDD--SATEESHPVITGSHDCTIRLWDLAAGKSL----CTLTN 370
A +ED + T+ES +TG D +++W + TL
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 371 HKKSVRSVALHPTLYM---FASASPD 393
H VR VA PT+ + AS S D
Sbjct: 203 HSDWVRDVAWSPTVLLRSYXASVSQD 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT---- 268
++ GH V +A P N+ A+GS D + VW++ G L L L V ++ G T
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 269 VSPRHP----YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ HP L S G D + WD+ A + G I+S+ + G+ + T+
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 325 ADKTVKLYK--------EDDSATEESHPV 345
DK V++ + E D E + PV
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARV 59
VW++ G L L L V ++ GH V ++ HPT +VL++AG D+ V
Sbjct: 108 VWEIPDGGLVLPLREPVITL---------EGHTKRVGIVAWHPTAQNVLLSAGXDNVILV 158
Query: 60 WDVRTKANVYTLTG--HTNTIASV 81
WDV T A V TL H +TI SV
Sbjct: 159 WDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 345 VITGSHDCTIRLWDLAAG-------KSLCTLTNHKKSVRSVALHPTLY-MFASASPDN-I 395
+ +GS DCT+ +W++ G + + TL H K V VA HPT + SA DN I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 396 KQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLV 428
W G + L H I S+ + +G L+
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARV 59
VW++ G L L L V ++ GH V ++ HPT +VL++AG D+ V
Sbjct: 108 VWEIPDGGLVLPLREPVITL---------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 60 WDVRTKANVYTLTG--HTNTIASV 81
WDV T A V TL H +TI SV
Sbjct: 159 WDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT---- 268
++ GH V +A P N+ A+GS D + VW++ G L L L V ++ G T
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 269 VSPRHP----YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
+ HP L S G D + WD+ A + G I+S+ + G+ + T+
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 325 ADKTVKLYK--------EDDSATEESHPV 345
DK V++ + E D E + PV
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 345 VITGSHDCTIRLWDLAAG-------KSLCTLTNHKKSVRSVALHPTLY-MFASASPDN-I 395
+ +GS DCT+ +W++ G + + TL H K V VA HPT + SA DN I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 396 KQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLV 428
W G + L H I S+ + +G L+
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 25/187 (13%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP 274
+ GH G + + V+ ++ TGSAD IK+WD++ G+ + V V+ + SP
Sbjct: 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGN 128
Query: 275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE 334
Y + D+ PGS++ I+ + D++ L + K+
Sbjct: 129 YFLAILDN------------VMKNPGSIN----IYEIERDSATHELTKVSEEPIHKIITH 172
Query: 335 D--DSAT-----EESHPVITGSHDCTIRLWDLAAG-KSLCTLTNHKKSVRSVALHPTLYM 386
+ D+AT + +I G D I +D++ + + ++ H+KS+ + P L
Sbjct: 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232
Query: 387 FASASPD 393
F ++S D
Sbjct: 233 FITSSRD 239
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
GH + + + D+L + +DS+A VW + TL GHT TI S+
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 255 LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTF 313
+ LTGH + + + LFSC D + W Y+ + G++D +G I+S+
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW---YSLNGERLGTLDGHTGTIWSIDV 82
Query: 314 DNSGSRLITTEADKTVKLY 332
D +T AD ++KL+
Sbjct: 83 DCFTKYCVTGSADYSIKLW 101
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-------KLSLTGH 260
P+K H +V V P FA+ D I +++ G L H
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238
Query: 261 VGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290
GSV GLT SP + S D+T+K W++
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 236 TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD-LEYNK 294
+GS D + +++ K K + H V + +P S G D T+ ++ ++ K
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224
Query: 295 APV-QPGSMD--SESG-IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH 350
V + S+ + SG +F +T+ G+++ + ADKT+K++ E++ PV T
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT--- 281
Query: 351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE-GKFIQNL 409
R+ D + + + T S S + + PE G Q
Sbjct: 282 ----RIED-----------------QQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320
Query: 410 PGHNAIINSICVNNEGVLVSGAD-NGTMCFWDWRTG 444
GHN I ++ + +G + AD G + WD TG
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDL-ATGKLKLSLTG-HVGSVRGLTVSPRHPY 275
H V CV+ P N ATGS D + VW++ + + G H S +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 276 LFSCGDDRTVKCWDLEY 292
+ S G D +K W++ +
Sbjct: 595 IVSAGQDSNIKFWNVPF 611
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD 393
+I+GS D T+ +++ K T H K V SV +P +FAS D
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 236 TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNK 294
+GS D IKVWDLA + S H V + SP +F SC +D + WD K
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 295 APVQ-----PGSMDS-------ESGIFSMTFDNSGSRLITTEADKTV 329
Q PG + + +S +F +N L+ T++ V
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
S+SG + + LI ++ K Y+ DD S ++GS D I++WD
Sbjct: 100 SDSGAVELWELDENETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 359 LAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPDN-IKQW--KCPE--GKFIQNLPGH 412
LA L + H V VA P +F S S DN I W +CP+ + + PG+
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 413 NAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF--QRLQVRCVSGF 458
+ V V G +NGT+ D ++ + +CV+G
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 160 RTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISG-H 218
+ H+ + ++V +EN+ + +A T + Q K+ + SG H
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---------------KVIKTFSGIH 183
Query: 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS 278
VR +AV F + S D +IK+ D TG + + GH V + + P + S
Sbjct: 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVS 241
Query: 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS- 337
CG+DRTV+ W E N + Q ++ + S I+S+ ++G +I +D V+++ ++ S
Sbjct: 242 CGEDRTVRIWSKE-NGSLKQVITLPAIS-IWSVDCXSNGD-IIVGSSDNLVRIFSQEKSR 298
Query: 338 -ATEE 341
A+E+
Sbjct: 299 WASED 303
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
V+R Y GH S V I L P D+ ++ G D T R+W
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIW 251
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 39/205 (19%)
Query: 256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW---DLEYNKAPVQPGSMDSESGIFSMT 312
+L GH G+V ++S + + S D+T K W L YN D++ FS
Sbjct: 99 TLIGHQGNV--CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSE- 155
Query: 313 FDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-H 371
++ +T ADKT+KL++ D K + T + H
Sbjct: 156 -----NKFLTASADKTIKLWQND---------------------------KVIKTFSGIH 183
Query: 372 KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA 431
VR +A+ + + ++ IK G ++ GH + + I + G +VS
Sbjct: 184 NDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG 243
Query: 432 DNGTMCFWDWRTGYNFQRLQVRCVS 456
++ T+ W G Q + + +S
Sbjct: 244 EDRTVRIWSKENGSLKQVITLPAIS 268
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 WDLATGKLKLSLTGHVGSVR-----GLTVIRHYHGHLSSVNTISLHP-TIDVLITAGRDS 55
+D T L++ G G +R + I+HY GH +++N + HP ++L++ +D
Sbjct: 115 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 56 TARVWDVRTKANVYTLTG 73
R+W+++T V G
Sbjct: 175 ALRLWNIQTDTLVAIFGG 192
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 WDLATGKLKLSLTGHVGSVR-----GLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDS 55
+D T L++ G G +R + I+HY GH +++N + HP ++L++ +D
Sbjct: 78 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 56 TARVWDVRTKANVYTLTG 73
R+W+++T V G
Sbjct: 138 ALRLWNIQTDTLVAIFGG 155
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 WDLATGKLKLSLTGHVGSVR-----GLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDS 55
+D T L++ G G +R + I+HY GH +++N + HP ++L++ +D
Sbjct: 79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 56 TARVWDVRTKANVYTLTG 73
R+W+++T V G
Sbjct: 139 ALRLWNIQTDTLVAIFGG 156
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 WDLATGKLKLSLTGHVGSVR-----GLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDS 55
+D T L++ G G +R + I+HY GH +++N + HP ++L++ +D
Sbjct: 78 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 56 TARVWDVRTKANVYTLTG 73
R+W+++T V G
Sbjct: 138 ALRLWNIQTDTLVAIFGG 155
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 WDLATGKLKLSLTGHVGSVR-----GLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDS 55
+D T L++ G G +R + I+HY GH +++N + HP ++L++ +D
Sbjct: 74 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 56 TARVWDVRTKANVYTLTG 73
R+W+++T V G
Sbjct: 134 ALRLWNIQTDTLVAIFGG 151
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 31/191 (16%)
Query: 256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM-TFD 314
+L+GH V GL +P +L S G+D V W P PG E G + TF
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPG----EGGWVPLQTF- 192
Query: 315 NSGSRLITTEADKTVKLYKEDDSATEESHPVITG--SHDCTIRLWDLAAGKSLCTLTNHK 372
T+ VK +S+ + TG + D IR+W++ +G L + H
Sbjct: 193 --------TQHQGAVKAVAW---CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241
Query: 373 KSVRSVALHPTLYMFASA---SPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLV- 428
+ V S+ P S + + + WK P + L GH + + S+ ++ +G V
Sbjct: 242 Q-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 429 SGADNGTMCFW 439
S A + T+ W
Sbjct: 301 SAAADETLRLW 311
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 34/196 (17%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL----SLTGHVGSVRGLTVS 270
+SGH V + P A+G D ++ VW A G+ + T H G+V+ +
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 271 PRHPYLFSCG---DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK 327
P + + G DR ++ W++ ++D+ S + S+ + LI+
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
+L +W + L H V S+ + P
Sbjct: 263 QNQLV-----------------------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 388 ASASPDN-IKQWKCPE 402
ASA+ D ++ W+C E
Sbjct: 300 ASAAADETLRLWRCFE 315
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 209 WKLYRVISGHLGWVRCVAVEP-GNEWFATG--SADKIIKVWDLATGKLKLSLTGHVGSVR 265
W + + H G V+ VA P + ATG ++D+ I++W++ +G ++ H V
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVC 244
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
+ SP + L S + +Y S + S+T G+ + + A
Sbjct: 245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304
Query: 326 DKTVKLYK 333
D+T++L++
Sbjct: 305 DETLRLWR 312
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 222 VRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRHP-YLFS 278
+ CV P + ATG D ++ +WD+ G + +S L H + + P +P +LF+
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFT 298
Query: 279 CGDDRTVKCWD 289
C +D ++ WD
Sbjct: 299 CSEDGSLWHWD 309
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 315 NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK-SLCTLTNHKK 373
N S++++ D+ V L+ D ++ H V TG D + +WD+ G + L H+
Sbjct: 224 NEPSQILSLTGDR-VPLHCVDRHPNQQ-HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEA 281
Query: 374 SVRSVALHPT--LYMFASASPDNIKQWKC----PEGKFIQNLPGHNAIINSICVNNEG 425
+ V HP+ ++F + ++ W PE + + G ++ S ++N+
Sbjct: 282 EMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQA 339
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM-TFD 314
+L+GH V GL +P +L S G+D V W P PG E G + TF
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPG----EGGWVPLQTF- 272
Query: 315 NSGSRLITTEADKTVKL-----YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT 369
T+ VK ++ + AT G+ D IR+W++ +G L +
Sbjct: 273 --------TQHQGAVKAVAWCPWQSNVLATG------GGTSDRHIRIWNVCSGACLSAVD 318
Query: 370 NHKKSVRSVALHPTLYMFASA---SPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV 426
H + V S+ P S + + + WK P + L GH + + S+ ++ +G
Sbjct: 319 AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377
Query: 427 LV-SGADNGTMCFW 439
V S A + T+ W
Sbjct: 378 TVASAAADETLRLW 391
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 34/196 (17%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL----SLTGHVGSVRGLTVS 270
+SGH V + P A+G D ++ VW A G+ + T H G+V+ +
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 271 PRHPYLFSCG---DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK 327
P + + G DR ++ W++ ++D+ S + S+ + LI+
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
+L +W + L H V S+ + P
Sbjct: 343 QNQLV-----------------------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 388 ASASPDN-IKQWKCPE 402
ASA+ D ++ W+C E
Sbjct: 380 ASAAADETLRLWRCFE 395
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 209 WKLYRVISGHLGWVRCVAVEP-GNEWFATG--SADKIIKVWDLATGKLKLSLTGHVGSVR 265
W + + H G V+ VA P + ATG ++D+ I++W++ +G ++ H V
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVC 324
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
+ SP + L S + +Y S + S+T G+ + + A
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 384
Query: 326 DKTVKLYK 333
D+T++L++
Sbjct: 385 DETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM-TFD 314
+L+GH V GL +P +L S G+D V W P PG E G + TF
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------PSAPG----EGGWVPLQTF- 283
Query: 315 NSGSRLITTEADKTVKL-----YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT 369
T+ VK ++ + AT G+ D IR+W++ +G L +
Sbjct: 284 --------TQHQGAVKAVAWCPWQSNVLATG------GGTSDRHIRIWNVCSGACLSAVD 329
Query: 370 NHKKSVRSVALHPTLYMFASA---SPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV 426
H + V S+ P S + + + WK P + L GH + + S+ ++ +G
Sbjct: 330 AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 388
Query: 427 LV-SGADNGTMCFW 439
V S A + T+ W
Sbjct: 389 TVASAAADETLRLW 402
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 34/196 (17%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL----SLTGHVGSVRGLTVS 270
+SGH V + P A+G D ++ VW A G+ + T H G+V+ +
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 271 PRHPYLFSCG---DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK 327
P + + G DR ++ W++ ++D+ S + S+ + LI+
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
+L +W + L H V S+ + P
Sbjct: 354 QNQLV-----------------------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 388 ASASPDN-IKQWKCPE 402
ASA+ D ++ W+C E
Sbjct: 391 ASAAADETLRLWRCFE 406
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
D G+ L + T+ ++ + S V+TG + + L ++ GK L L HKK
Sbjct: 194 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK 252
Query: 374 SVRSVALHPTL-YMFASASPDN-IKQWKCPE----GKFIQNLPGHNAIINSICVNNEGVL 427
V VAL+P + A+AS D +K W + F+ +LP H +N+ C + +G
Sbjct: 253 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGAR 311
Query: 428 VSGADN 433
+ D
Sbjct: 312 LLTTDQ 317
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 42/109 (38%)
Query: 225 VAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR 283
VA+ P +WF AT S D+ +K+WDL + K S ++ RHP +C
Sbjct: 257 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVNAAC---- 304
Query: 284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
F G+RL+TT+ +++Y
Sbjct: 305 -----------------------------FSPDGARLLTTDQKSEIRVY 324
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294
+L L T V + SPRH +L++ G D + CW+L+ K
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
D G+ L + T+ ++ + S V+TG + + L ++ GK L L HKK
Sbjct: 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK 251
Query: 374 SVRSVALHPTL-YMFASASPDN-IKQWKCPE----GKFIQNLPGHNAIINSICVNNEGVL 427
V VAL+P + A+AS D +K W + F+ +LP H +N+ C + +G
Sbjct: 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGAR 310
Query: 428 VSGADN 433
+ D
Sbjct: 311 LLTTDQ 316
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 42/116 (36%)
Query: 218 HLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL 276
H V VA+ P +WF AT S D+ +K+WDL + K S ++ RHP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVN 300
Query: 277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
+C F G+RL+TT+ +++Y
Sbjct: 301 AAC---------------------------------FSPDGARLLTTDQKSEIRVY 323
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM 311
+L L T V + SPRH +L++ G D + CW+L+ K + +S +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301
Query: 312 TFDN 315
DN
Sbjct: 302 CSDN 305
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294
+L L T V + SPRH +L++ G D + CW+L+ K
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM 311
+L L T V + SPRH +L++ G D + CW+L+ K + +S +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301
Query: 312 TFDN 315
DN
Sbjct: 302 CSDN 305
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
D G+ L + T+ ++ + S V+TG + + L ++ GK L L HKK
Sbjct: 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK 251
Query: 374 SVRSVALHPTL-YMFASASPDN-IKQWKCPE----GKFIQNLPGHNAIINSICVNNEGVL 427
V VAL+P + A+AS D +K W + F+ +LP H +N+ C + +G
Sbjct: 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGAR 310
Query: 428 VSGAD 432
+ D
Sbjct: 311 LLTTD 315
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 42/116 (36%)
Query: 218 HLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL 276
H V VA+ P +WF AT S D+ +K+WDL + K S ++ RHP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVN 300
Query: 277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
+C F G+RL+TT+ +++Y
Sbjct: 301 AAC---------------------------------FSPDGARLLTTDQKSEIRVY 323
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H+S + + P+ + LI++ +D ++W V+ +N TL GH T+ +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 184
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 209 WKLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL 267
+ L R I H+ + + P E + S D +K+W + G +L GH +V +
Sbjct: 125 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 184
Query: 268 TVSPRHPYLFSCGDDRTVKCWD 289
+ R + S D T++ W+
Sbjct: 185 AIIDRGRNVLSASLDGTIRLWE 206
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 63/242 (26%)
Query: 234 FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293
F G+ + IKV D + HV + L P L S D +K W ++
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCT 353
P LI A T D + + V++ S D T
Sbjct: 169 SNP---------------------RTLIGHRATVT------DIAIIDRGRNVLSASLDGT 201
Query: 354 IRLWDLAAGKSLCTLT---NHKKSVRSVAL----HPTLYMFASASPDNIKQWKCPEGKFI 406
IRLW+ G ++ T N V S+AL L+ +++ +N++ GK++
Sbjct: 202 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY--GKYV 259
Query: 407 QNLPGH-NAII----------------------NSICV--NNEGVLVSGADNGTMCFWDW 441
+ GH + +I NS+ V NN + +G +NG + WD
Sbjct: 260 --IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
Query: 442 RT 443
R+
Sbjct: 318 RS 319
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 332 YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
Y D+A + I G+ + I++ D H + + P+ S+S
Sbjct: 96 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 155
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV-LVSGADNGTMCFWDWRTG 444
D +K W +G + L GH A + I + + G ++S + +GT+ W+ TG
Sbjct: 156 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
H+S + + P+ + LI++ +D ++W V+ +N TL GH T+ +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 209 WKLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL 267
+ L R I H+ + + P E + S D +K+W + G +L GH +V +
Sbjct: 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187
Query: 268 TVSPRHPYLFSCGDDRTVKCWD 289
+ R + S D T++ W+
Sbjct: 188 AIIDRGRNVLSASLDGTIRLWE 209
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 63/242 (26%)
Query: 234 FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293
F G+ + IKV D + HV + L P L S D +K W ++
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCT 353
P LI A T D + + V++ S D T
Sbjct: 172 SNP---------------------RTLIGHRATVT------DIAIIDRGRNVLSASLDGT 204
Query: 354 IRLWDLAAGKSLCTLT---NHKKSVRSVAL----HPTLYMFASASPDNIKQWKCPEGKFI 406
IRLW+ G ++ T N V S+AL L+ +++ +N++ GK++
Sbjct: 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY--GKYV 262
Query: 407 QNLPGH-NAII----------------------NSICV--NNEGVLVSGADNGTMCFWDW 441
+ GH + +I NS+ V NN + +G +NG + WD
Sbjct: 263 --IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
Query: 442 RT 443
R+
Sbjct: 321 RS 322
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 332 YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
Y D+A + I G+ + I++ D H + + P+ S+S
Sbjct: 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 158
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGV-LVSGADNGTMCFWDWRTG 444
D +K W +G + L GH A + I + + G ++S + +GT+ W+ TG
Sbjct: 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTI 78
H S V ++S + + + L +AG D R WDV+TK + TL H + I
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTI 78
H S V ++S + + + L +AG D R WDV+TK + TL H + I
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 409 LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
L GH ++SIC + +L+S + + WDW+TG N
Sbjct: 237 LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP 274
+ GH V +A A+G D ++++WD + K + T H +V+ + P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK--LY 332
L + G G+MD + ++ +G+R+ T +A V ++
Sbjct: 273 NLLATGG------------------GTMDKQIHFWNAA---TGARVNTVDAGSQVTSLIW 311
Query: 333 KEDDSATEESHPVITGSHDCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPTLYMFASA 390
+H G D + +W ++ + H V AL P + ++A
Sbjct: 312 SPHSKEIMSTH----GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367
Query: 391 SPD-NIKQWKCPEGKFIQ 407
+ D N+K W+ +G ++
Sbjct: 368 ASDENLKFWRVYDGDHVK 385
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 44/205 (21%)
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDL--- 290
A G+ +++ DL +G L GH + ++ SPR+ Y+ + D VK WD+
Sbjct: 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 291 --------EYN---KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT 339
++N V+ + + + F + G L+T D ++L+ +S+
Sbjct: 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW---NSSN 276
Query: 340 EESHPVITGS-------------------------HDCTIRLWDLAAGKSLCTLTNHKKS 374
E+ V G + TI ++ + +G+ + L H K+
Sbjct: 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336
Query: 375 VRSVALHPTLYMFASASPD-NIKQW 398
V S S D NI W
Sbjct: 337 VDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 30 HGHLSSVNTISLHPTID-VLITAGRDSTARVWDVRTKAN-VYTLTGHTNTIASVVTQASE 87
GH + +S P D +L TA DS ++WDVR + + TL H + V A+
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 88 PQVG 91
G
Sbjct: 243 AHNG 246
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 46/172 (26%)
Query: 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED--------------------- 335
+QP + + + +D G + T +D+ +K++K D
Sbjct: 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 62
Query: 336 -DSATEESHPVI-TGSHDCTIRLWDLAAGKS---------LCTLTNHKKSVRSVALHPT- 383
D A+ E +I + S+D T++LW+ + LCTL + K S+ SV P
Sbjct: 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 384 -------------LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVN 422
L ++ + P +++ W + ++P N + + C++
Sbjct: 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 174
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 46/172 (26%)
Query: 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED--------------------- 335
+QP + + + +D G + T +D+ +K++K D
Sbjct: 1 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 60
Query: 336 -DSATEESHPVI-TGSHDCTIRLWDLAAGKS---------LCTLTNHKKSVRSVALHPT- 383
D A+ E +I + S+D T++LW+ + LCTL + K S+ SV P
Sbjct: 61 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH 120
Query: 384 -------------LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVN 422
L ++ + P +++ W + ++P N + + C++
Sbjct: 121 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 172
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 50/190 (26%)
Query: 264 VRGLTVSPRH-PYLFSCGDDRTVKCWD---------LEYNKAPVQPGSMDSESGIFSMTF 313
VR + SP ++ + G DR + C+D +E ++ PVQ GIF++++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-------GGIFALSW 261
Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
+S T D TIR+WD+ K + T K+
Sbjct: 262 --------------------------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295
Query: 374 SVRS----VALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ + V + + + + ++ + ++ + GHN I ++ VN L+S
Sbjct: 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLIS 352
Query: 430 GADNGTMCFW 439
G+ +G + W
Sbjct: 353 GSYDGRIMEW 362
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 66/171 (38%), Gaps = 46/171 (26%)
Query: 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED---------------------- 335
QP + + + +D G + T +D+ +K++K D
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 336 DSATEESHPVI-TGSHDCTIRLWDLAAGKS---------LCTLTNHKKSVRSVALHPT-- 383
D A+ E +I + S+D T++LW+ + LCTL + K S+ SV P
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 384 ------------LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVN 422
L ++ + P +++ W + ++P N + + C++
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLS 174
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 236 TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWD 289
+G D +KVWDL+ + S H V + P +F SCG+D + WD
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVG 91
H V T+S+ ++ G+D + +VWD+ KA + + H++ + V A+ P G
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV---AACP--G 192
Query: 92 TKTVLLESCE--RIMF 105
T+ L E RI+
Sbjct: 193 KDTIFLSCGEDGRILL 208
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 50/190 (26%)
Query: 264 VRGLTVSPRH-PYLFSCGDDRTVKCWD---------LEYNKAPVQPGSMDSESGIFSMTF 313
VR + SP ++ + G DR + C+D +E ++ PVQ GIF++++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-------GGIFALSW 261
Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
+S T D TIR+WD+ K + T K+
Sbjct: 262 --------------------------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295
Query: 374 SVRS----VALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
+ + V + + + + ++ + ++ + GHN I ++ VN L+S
Sbjct: 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLIS 352
Query: 430 GADNGTMCFW 439
G+ +G + W
Sbjct: 353 GSYDGRIXEW 362
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 206 HAPWKLYRVISGHLGWVRCVAVEP----GNEWFATGSADKIIKVWDLATG--KLKLSLTG 259
H P K V S + C++ P GN + GS ++ W++ + +
Sbjct: 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSR 319
H G V + S +F+ D+T K WDL N+A +Q D+ + S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSC 143
Query: 320 LITTEADKTVKLYKEDDSATEESHPVI 346
++T DKT+K + T S+P++
Sbjct: 144 VMTGSWDKTLKFWD-----TRSSNPMM 165
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK----------E 334
V+CW+++ + + + + + + GS++ T DKT K++ +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125
Query: 335 DDSATEESH--------PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP 382
D+ + H V+TGS D T++ WD + + L ++ + ++P
Sbjct: 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 21/226 (9%)
Query: 229 PGNEWFATGSADKIIKVWDLAT--GKLKLSLT-GHVGSVRGLTVSP-RHPYLFSCGDDRT 284
P ++ G +I++ ++ GKL +L S+ VSP PYL + D
Sbjct: 28 PLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGV 87
Query: 285 VKCWDL-EYNKAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE 341
+K W+L E V S+ D S + +T + + D + + K + E
Sbjct: 88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147
Query: 342 SHPVITGSHDCTIRLWDLAAGK---SLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQW 398
+ I L + + + N +KS+ L + S I
Sbjct: 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL--------LVALTNLSRVIIFDI 199
Query: 399 KCPEG-KFIQNLPGHNAIINSICVNNE-GVLVSGADNGTMCFWDWR 442
+ E + I+N P H A ++SIC++ E VL+ G G + WD R
Sbjct: 200 RTLERLQIIENSPRHGA-VSSICIDEECCVLILGTTRGIIDIWDIR 244
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 234 FATGSADKIIKVWDLATGK--LKLSLTG-HVGSVRGLTVSPRHPY-------LFSCGDDR 283
FA+ + +WDL K + LS T + G + L+V HP +D
Sbjct: 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYK 333
++ WDL P+Q + + GI S+ + + L+ + D TV L+
Sbjct: 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 266 GLTVSPRHPYLFSCGDDRTVKC 287
G+ +SP+H Y +CGD R + C
Sbjct: 131 GVLISPQHTYFINCGDSRGLLC 152
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 266 GLTVSPRHPYLFSCGDDRTVKC 287
G+ +SP+H Y +CGD R + C
Sbjct: 131 GVLISPQHTYFINCGDSRGLLC 152
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 266 GLTVSPRHPYLFSCGDDRTV 285
G+ +SP+H Y +CGD R V
Sbjct: 138 GVMISPKHIYFINCGDSRAV 157
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 234 FATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPY----LFSCGDDRTVKC 287
AT S+D+ +K++D+ G L L GH G V V+ HP L SC DR V
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPV--WQVAWAHPMYGNILASCSYDRKVII 85
Query: 288 WDLE 291
W E
Sbjct: 86 WREE 89
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL 276
GH G + + N+ + S D +++W G + GH S+ + +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-V 303
Query: 277 FSCGDDRTVKCWDLEYN 293
SC D +V+ W L+ N
Sbjct: 304 ISCSMDGSVRLWSLKQN 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,358,098
Number of Sequences: 62578
Number of extensions: 581403
Number of successful extensions: 3025
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 775
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)