Query psy8895
Match_columns 479
No_of_seqs 244 out of 2770
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 22:12:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4.5E-44 1.5E-48 370.1 42.6 362 25-445 51-569 (611)
2 1nr0_A Actin interacting prote 100.0 4.6E-43 1.6E-47 362.5 43.5 347 1-442 85-610 (611)
3 1vyh_C Platelet-activating fac 100.0 1.8E-43 6.1E-48 347.7 38.1 307 27-442 102-410 (410)
4 2ymu_A WD-40 repeat protein; u 100.0 4.7E-41 1.6E-45 345.2 50.7 412 8-451 7-505 (577)
5 1got_B GT-beta; complex (GTP-b 100.0 1.1E-41 3.6E-46 326.7 41.0 291 24-440 46-340 (340)
6 2ynn_A Coatomer subunit beta'; 100.0 7.2E-42 2.4E-46 322.5 38.5 224 218-443 54-302 (304)
7 3ow8_A WD repeat-containing pr 100.0 2E-41 6.7E-46 321.9 39.5 288 25-441 24-319 (321)
8 2ymu_A WD-40 repeat protein; u 100.0 6.4E-41 2.2E-45 344.2 45.0 329 1-440 206-577 (577)
9 2pbi_B Guanine nucleotide-bind 100.0 9.3E-41 3.2E-45 321.8 40.4 294 24-440 55-354 (354)
10 4g56_B MGC81050 protein; prote 100.0 3.4E-41 1.1E-45 325.2 35.5 292 29-444 38-344 (357)
11 4gqb_B Methylosome protein 50; 100.0 3.9E-41 1.3E-45 322.6 35.3 206 214-444 122-332 (344)
12 3iz6_a 40S ribosomal protein R 100.0 1.7E-41 5.8E-46 330.3 31.2 301 23-444 56-376 (380)
13 3frx_A Guanine nucleotide-bind 100.0 5.6E-40 1.9E-44 311.8 40.8 291 23-444 7-318 (319)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-40 6E-45 318.8 36.9 318 23-450 5-342 (345)
15 2xzm_R RACK1; ribosome, transl 100.0 3.6E-40 1.2E-44 316.4 38.8 231 214-445 71-342 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 5.4E-39 1.9E-43 306.4 36.4 297 22-443 3-328 (330)
17 4ery_A WD repeat-containing pr 100.0 4.5E-38 1.5E-42 297.5 40.0 292 23-442 13-311 (312)
18 1erj_A Transcriptional repress 100.0 4.5E-38 1.5E-42 307.5 41.0 223 218-443 122-389 (393)
19 4aow_A Guanine nucleotide-bind 100.0 1.7E-37 6E-42 296.5 41.2 230 214-445 81-339 (340)
20 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-38 4E-43 355.8 35.0 403 1-450 641-1165(1249)
21 2ynn_A Coatomer subunit beta'; 100.0 9.3E-37 3.2E-41 287.5 34.5 249 211-461 5-282 (304)
22 1pgu_A Actin interacting prote 100.0 3.3E-36 1.1E-40 311.2 40.8 365 25-449 55-579 (615)
23 2oaj_A Protein SNI1; WD40 repe 100.0 7.3E-37 2.5E-41 327.9 36.1 385 30-471 14-631 (902)
24 3dm0_A Maltose-binding peripla 100.0 4.5E-36 1.5E-40 315.0 40.3 228 214-442 425-692 (694)
25 2pm7_B Protein transport prote 100.0 2.8E-36 9.5E-41 283.3 34.6 216 215-442 49-284 (297)
26 1vyh_C Platelet-activating fac 100.0 4.1E-36 1.4E-40 295.3 36.9 237 213-451 102-377 (410)
27 1r5m_A SIR4-interacting protei 100.0 4.3E-36 1.5E-40 295.5 36.8 305 31-442 43-424 (425)
28 3sfz_A APAF-1, apoptotic pepti 100.0 6E-36 2.1E-40 334.0 40.7 338 11-451 609-1082(1249)
29 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-35 5.6E-40 279.3 36.4 295 23-450 8-303 (313)
30 3ow8_A WD repeat-containing pr 100.0 2.2E-35 7.7E-40 280.1 36.1 238 211-450 24-286 (321)
31 3zwl_B Eukaryotic translation 100.0 6.6E-35 2.3E-39 281.4 38.1 227 217-445 72-348 (369)
32 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-34 3.8E-39 288.3 39.8 304 26-444 111-443 (445)
33 3k26_A Polycomb protein EED; W 100.0 1.4E-35 4.9E-40 285.9 32.4 226 218-443 68-366 (366)
34 4h5i_A Guanine nucleotide-exch 100.0 1.6E-35 5.4E-40 286.3 32.7 207 217-446 131-346 (365)
35 3bg1_A Protein SEC13 homolog; 100.0 8.5E-36 2.9E-40 282.5 29.6 221 215-443 53-293 (316)
36 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-34 4.2E-39 310.7 41.9 372 30-453 55-674 (902)
37 1pgu_A Actin interacting prote 100.0 1.4E-34 4.7E-39 299.0 40.7 365 30-450 15-526 (615)
38 1sq9_A Antiviral protein SKI8; 100.0 1.4E-35 4.9E-40 289.7 31.4 304 24-445 7-397 (397)
39 3ei3_B DNA damage-binding prot 100.0 3.7E-35 1.3E-39 285.7 32.5 293 23-443 63-382 (383)
40 2pm9_A Protein WEB1, protein t 100.0 1.2E-36 4.2E-41 299.1 22.1 314 32-444 11-415 (416)
41 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-35 1.6E-39 283.4 32.7 290 29-445 4-363 (372)
42 3dwl_C Actin-related protein 2 100.0 4.6E-36 1.6E-40 291.3 24.3 289 29-441 7-377 (377)
43 3i2n_A WD repeat-containing pr 100.0 5E-35 1.7E-39 281.2 31.1 229 217-445 63-355 (357)
44 1gxr_A ESG1, transducin-like e 100.0 4.7E-34 1.6E-38 272.0 36.7 308 32-441 8-335 (337)
45 3mkq_A Coatomer beta'-subunit; 100.0 6.1E-34 2.1E-38 304.2 41.1 333 24-460 4-403 (814)
46 3frx_A Guanine nucleotide-bind 100.0 3.5E-34 1.2E-38 271.8 33.0 263 209-475 7-299 (319)
47 1got_B GT-beta; complex (GTP-b 100.0 2E-33 6.8E-38 269.1 38.4 242 209-451 45-309 (340)
48 3v7d_B Cell division control p 100.0 1.8E-33 6.1E-38 281.0 38.4 305 26-440 114-460 (464)
49 3vl1_A 26S proteasome regulato 100.0 9.3E-35 3.2E-39 286.3 28.3 306 34-443 57-419 (420)
50 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-33 9E-38 267.5 37.4 212 215-451 53-345 (351)
51 4e54_B DNA damage-binding prot 100.0 6.1E-35 2.1E-39 289.3 26.8 296 26-447 112-434 (435)
52 4gga_A P55CDC, cell division c 100.0 2.8E-33 9.6E-38 276.1 37.5 207 218-449 188-401 (420)
53 2pbi_B Guanine nucleotide-bind 100.0 5.3E-33 1.8E-37 267.6 38.4 242 209-450 54-322 (354)
54 4ggc_A P55CDC, cell division c 100.0 5.3E-33 1.8E-37 262.8 37.7 224 217-444 65-316 (318)
55 3iz6_a 40S ribosomal protein R 100.0 4.6E-34 1.6E-38 277.8 31.0 243 208-450 55-336 (380)
56 4a11_B DNA excision repair pro 100.0 6.3E-33 2.1E-37 271.5 37.4 313 27-442 37-404 (408)
57 3jrp_A Fusion protein of prote 100.0 2.2E-33 7.6E-38 271.9 32.8 224 215-450 51-294 (379)
58 3gre_A Serine/threonine-protei 100.0 9.9E-34 3.4E-38 280.6 30.9 303 25-440 54-437 (437)
59 3mmy_A MRNA export factor; mRN 100.0 3.6E-33 1.2E-37 269.2 32.2 222 216-443 83-346 (368)
60 4aow_A Guanine nucleotide-bind 100.0 1.3E-32 4.4E-37 262.7 35.1 263 209-474 28-318 (340)
61 4ery_A WD repeat-containing pr 100.0 5E-32 1.7E-36 256.0 38.6 242 208-451 12-276 (312)
62 4gqb_B Methylosome protein 50; 100.0 3E-33 1E-37 267.8 30.4 245 31-405 80-334 (344)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-32 3.9E-37 264.3 34.0 236 209-444 5-284 (345)
64 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-34 4.9E-39 291.0 20.4 227 214-444 261-518 (524)
65 2hes_X YDR267CP; beta-propelle 100.0 3.2E-32 1.1E-36 259.6 35.1 235 209-445 4-282 (330)
66 4aez_A CDC20, WD repeat-contai 100.0 1.7E-32 5.9E-37 268.7 33.9 290 29-449 87-386 (401)
67 2xzm_R RACK1; ribosome, transl 100.0 2.6E-32 8.8E-37 261.7 32.5 235 210-448 12-290 (343)
68 1erj_A Transcriptional repress 100.0 4.6E-32 1.6E-36 264.9 33.7 232 217-451 62-349 (393)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-32 6.2E-37 292.8 33.5 342 8-452 4-469 (814)
70 1yfq_A Cell cycle arrest prote 100.0 6.3E-32 2.2E-36 258.2 30.1 281 27-441 5-322 (342)
71 1p22_A F-BOX/WD-repeat protein 100.0 7.6E-32 2.6E-36 267.0 31.6 278 29-448 129-419 (435)
72 2j04_A TAU60, YPL007P, hypothe 100.0 9.2E-32 3.1E-36 264.7 31.0 263 30-442 12-296 (588)
73 4g56_B MGC81050 protein; prote 100.0 6.6E-32 2.3E-36 260.2 29.1 234 216-450 39-308 (357)
74 2pm7_B Protein transport prote 100.0 2.8E-31 9.7E-36 249.1 29.8 206 214-444 4-239 (297)
75 1gxr_A ESG1, transducin-like e 100.0 1.1E-30 3.9E-35 248.6 34.1 266 30-400 48-335 (337)
76 3dw8_B Serine/threonine-protei 100.0 7.3E-32 2.5E-36 267.7 26.5 202 220-447 94-377 (447)
77 4ggc_A P55CDC, cell division c 100.0 9.8E-31 3.3E-35 247.2 31.5 245 30-403 64-316 (318)
78 3jro_A Fusion protein of prote 100.0 1.1E-31 3.7E-36 283.6 27.6 219 215-445 49-287 (753)
79 3dm0_A Maltose-binding peripla 100.0 2E-30 7E-35 272.0 36.3 240 209-451 372-640 (694)
80 2pm9_A Protein WEB1, protein t 100.0 1.7E-31 5.9E-36 262.3 25.3 282 30-403 64-415 (416)
81 3odt_A Protein DOA1; ubiquitin 100.0 8.7E-30 3E-34 240.0 34.8 239 208-451 7-263 (313)
82 2w18_A PALB2, fancn, partner a 100.0 2.9E-30 9.9E-35 239.0 30.6 207 217-441 134-355 (356)
83 3zwl_B Eukaryotic translation 100.0 3.2E-29 1.1E-33 241.5 38.3 236 212-451 25-312 (369)
84 3ei3_B DNA damage-binding prot 100.0 1.5E-30 5.1E-35 253.2 28.6 241 209-451 63-347 (383)
85 3vl1_A 26S proteasome regulato 100.0 8.4E-31 2.9E-35 257.9 27.1 270 29-402 94-419 (420)
86 3v7d_B Cell division control p 100.0 2.4E-29 8.3E-34 251.0 35.5 234 211-450 113-388 (464)
87 4aez_A CDC20, WD repeat-contai 100.0 8.4E-30 2.9E-34 249.6 31.2 250 31-409 132-387 (401)
88 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-31 8.4E-36 267.5 20.3 270 28-401 202-516 (524)
89 1sq9_A Antiviral protein SKI8; 100.0 1.2E-29 4.2E-34 247.6 31.8 237 210-451 7-330 (397)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-29 1.8E-33 247.3 36.6 264 25-402 151-442 (445)
91 1k8k_C P40, ARP2/3 complex 41 100.0 8.3E-30 2.8E-34 246.3 28.7 229 215-443 4-274 (372)
92 2xyi_A Probable histone-bindin 100.0 8E-30 2.7E-34 252.1 29.2 207 214-444 176-411 (430)
93 1r5m_A SIR4-interacting protei 100.0 3.2E-29 1.1E-33 246.3 32.0 227 216-445 105-363 (425)
94 3k26_A Polycomb protein EED; W 100.0 1.2E-29 4.1E-34 244.4 28.3 183 217-401 113-365 (366)
95 3bg1_A Protein SEC13 homolog; 100.0 3.7E-30 1.3E-34 243.7 20.5 207 214-443 8-247 (316)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5E-28 1.7E-32 240.7 36.9 228 215-443 98-391 (450)
97 3gre_A Serine/threonine-protei 100.0 1.1E-29 3.7E-34 251.6 24.3 246 205-451 48-367 (437)
98 3i2n_A WD repeat-containing pr 100.0 6.3E-29 2.2E-33 238.6 27.2 232 211-445 10-293 (357)
99 1yfq_A Cell cycle arrest prote 100.0 1.8E-28 6.3E-33 234.1 30.1 235 213-451 5-290 (342)
100 4e54_B DNA damage-binding prot 100.0 2.3E-29 8E-34 249.2 24.2 241 210-450 110-394 (435)
101 4a11_B DNA excision repair pro 100.0 3E-28 1E-32 238.2 31.8 236 212-450 36-372 (408)
102 2w18_A PALB2, fancn, partner a 100.0 1.2E-28 4.2E-33 228.1 27.2 250 1-400 67-355 (356)
103 3dwl_C Actin-related protein 2 100.0 2.1E-30 7.1E-35 251.4 15.7 226 215-442 7-280 (377)
104 4gq1_A NUP37; propeller, trans 100.0 2.6E-29 8.8E-34 245.4 22.3 220 215-441 132-387 (393)
105 3vu4_A KMHSV2; beta-propeller 100.0 5.7E-28 2E-32 232.5 30.9 187 225-445 64-273 (355)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-29 1.7E-33 244.2 23.2 254 26-405 74-345 (402)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-28 1.8E-32 236.8 30.5 207 215-446 77-302 (402)
108 3mmy_A MRNA export factor; mRN 100.0 1.2E-27 4.1E-32 230.4 32.4 240 209-451 29-312 (368)
109 3jrp_A Fusion protein of prote 100.0 2.3E-28 7.9E-33 236.5 26.2 208 213-445 5-242 (379)
110 3lrv_A PRE-mRNA-splicing facto 100.0 1.7E-28 5.9E-33 235.0 22.9 185 234-444 88-293 (343)
111 1p22_A F-BOX/WD-repeat protein 100.0 8.7E-27 3E-31 230.7 31.8 220 215-445 129-367 (435)
112 1l0q_A Surface layer protein; 100.0 8.4E-26 2.9E-30 220.1 37.3 203 221-453 75-285 (391)
113 3bws_A Protein LP49; two-domai 100.0 3.9E-26 1.3E-30 225.6 35.4 221 217-442 167-431 (433)
114 4gga_A P55CDC, cell division c 100.0 5.3E-26 1.8E-30 224.0 36.0 206 217-451 145-361 (420)
115 3f3f_A Nucleoporin SEH1; struc 100.0 5.3E-27 1.8E-31 223.7 27.7 219 214-444 6-250 (351)
116 4gq1_A NUP37; propeller, trans 100.0 6.1E-28 2.1E-32 235.6 20.7 176 218-400 185-387 (393)
117 4h5i_A Guanine nucleotide-exch 100.0 4.1E-27 1.4E-31 227.3 24.8 160 218-403 175-344 (365)
118 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-26 4.1E-31 222.2 27.0 197 216-442 122-332 (343)
119 2j04_A TAU60, YPL007P, hypothe 100.0 2E-26 6.9E-31 226.8 26.8 279 7-431 27-349 (588)
120 3jro_A Fusion protein of prote 99.9 1E-26 3.5E-31 245.6 22.1 207 214-445 4-240 (753)
121 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.6E-25 1.2E-29 220.0 29.9 229 220-450 5-351 (450)
122 3dw8_B Serine/threonine-protei 99.9 8.7E-26 3E-30 223.8 24.4 210 217-453 26-326 (447)
123 1nir_A Nitrite reductase; hemo 99.9 1.1E-23 3.6E-28 213.4 33.3 310 40-452 144-523 (543)
124 2xyi_A Probable histone-bindin 99.9 1E-24 3.4E-29 215.5 24.2 206 214-443 123-353 (430)
125 3vu4_A KMHSV2; beta-propeller 99.9 2.2E-23 7.6E-28 200.4 28.2 195 218-445 99-338 (355)
126 1l0q_A Surface layer protein; 99.9 4E-22 1.4E-26 194.0 34.8 201 222-452 34-242 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-22 5.7E-27 198.4 29.3 222 213-473 172-408 (415)
128 3bws_A Protein LP49; two-domai 99.9 7.6E-22 2.6E-26 194.7 28.6 233 214-451 118-398 (433)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-20 7E-25 183.5 33.0 181 215-424 218-408 (415)
130 1k32_A Tricorn protease; prote 99.9 1.6E-20 5.4E-25 205.6 31.5 227 213-445 197-463 (1045)
131 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-20 6E-25 198.1 29.0 226 215-444 147-460 (741)
132 1nir_A Nitrite reductase; hemo 99.9 1.6E-19 5.4E-24 182.8 27.1 237 210-450 170-466 (543)
133 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-19 6.6E-24 189.0 28.7 225 218-445 119-437 (706)
134 2ojh_A Uncharacterized protein 99.9 5.5E-20 1.9E-24 170.8 21.5 183 222-433 87-292 (297)
135 1k32_A Tricorn protease; prote 99.8 4.4E-19 1.5E-23 194.1 30.6 221 215-444 241-503 (1045)
136 3u4y_A Uncharacterized protein 99.8 1.6E-18 5.5E-23 164.4 30.6 216 218-465 82-320 (331)
137 1pby_B Quinohemoprotein amine 99.8 9.1E-19 3.1E-23 166.1 28.8 209 224-453 86-320 (337)
138 1ri6_A Putative isomerase YBHE 99.8 1.3E-17 4.6E-22 158.4 32.5 200 221-445 85-312 (343)
139 3vgz_A Uncharacterized protein 99.8 1.4E-17 4.8E-22 159.1 32.1 186 222-434 143-335 (353)
140 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-18 7.5E-23 164.4 25.6 225 224-453 47-335 (349)
141 1xfd_A DIP, dipeptidyl aminope 99.8 3E-19 1E-23 188.1 20.1 295 35-443 18-393 (723)
142 3hfq_A Uncharacterized protein 99.8 3.2E-17 1.1E-21 156.6 30.4 202 222-447 88-323 (347)
143 3o4h_A Acylamino-acid-releasin 99.8 4.2E-18 1.4E-22 174.7 24.6 182 224-442 114-314 (582)
144 2oit_A Nucleoporin 214KDA; NH2 99.8 2.2E-18 7.4E-23 169.8 19.4 158 218-403 91-279 (434)
145 1xfd_A DIP, dipeptidyl aminope 99.8 9E-18 3.1E-22 176.7 24.8 205 221-449 174-449 (723)
146 2ojh_A Uncharacterized protein 99.8 2.8E-17 9.5E-22 152.5 24.6 206 214-448 36-263 (297)
147 3vgz_A Uncharacterized protein 99.8 2.7E-16 9.1E-21 150.2 30.4 231 219-452 40-312 (353)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-18 1.2E-22 168.3 16.1 198 220-444 37-279 (434)
149 2ecf_A Dipeptidyl peptidase IV 99.8 5.7E-17 2E-21 171.1 23.7 218 219-442 36-366 (741)
150 3o4h_A Acylamino-acid-releasin 99.7 2.8E-17 9.4E-22 168.6 19.1 220 219-447 21-278 (582)
151 4a5s_A Dipeptidyl peptidase 4 99.7 6.8E-17 2.3E-21 170.4 22.4 221 224-447 66-357 (740)
152 3u4y_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 141.1 26.4 216 227-446 5-255 (331)
153 1jof_A Carboxy-CIS,CIS-muconat 99.7 7E-15 2.4E-19 141.5 28.2 183 239-444 117-342 (365)
154 1z68_A Fibroblast activation p 99.7 5E-16 1.7E-20 163.3 19.9 218 222-443 62-391 (719)
155 3scy_A Hypothetical bacterial 99.7 4.7E-14 1.6E-18 135.4 31.2 180 219-422 154-360 (361)
156 2oiz_A Aromatic amine dehydrog 99.7 1.7E-14 5.7E-19 138.5 27.6 198 224-425 112-359 (361)
157 1ri6_A Putative isomerase YBHE 99.7 1.2E-14 4.3E-19 137.8 26.2 209 233-442 7-261 (343)
158 3scy_A Hypothetical bacterial 99.7 8.6E-14 2.9E-18 133.5 32.0 227 218-447 48-343 (361)
159 3fvz_A Peptidyl-glycine alpha- 99.7 7.7E-14 2.6E-18 132.2 28.1 224 219-443 23-322 (329)
160 1pby_B Quinohemoprotein amine 99.7 9.8E-15 3.3E-19 138.2 21.2 215 232-451 2-277 (337)
161 2z3z_A Dipeptidyl aminopeptida 99.6 1.3E-14 4.3E-19 152.3 23.6 222 219-445 81-393 (706)
162 3hfq_A Uncharacterized protein 99.6 2.4E-14 8.2E-19 136.6 23.4 199 218-442 38-270 (347)
163 1z68_A Fibroblast activation p 99.6 3.6E-16 1.2E-20 164.4 11.4 217 224-445 20-348 (719)
164 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-13 8.7E-18 125.7 27.9 224 217-445 27-282 (286)
165 3pe7_A Oligogalacturonate lyas 99.6 4.9E-14 1.7E-18 136.4 22.8 214 225-442 86-381 (388)
166 3azo_A Aminopeptidase; POP fam 99.6 1.9E-13 6.4E-18 142.3 28.1 203 218-446 128-372 (662)
167 2oiz_A Aromatic amine dehydrog 99.6 5.1E-13 1.8E-17 128.1 27.9 229 213-450 45-343 (361)
168 1jmx_B Amine dehydrogenase; ox 99.6 4.9E-14 1.7E-18 134.1 20.2 209 225-451 5-292 (349)
169 1q7f_A NHL, brain tumor CG1071 99.5 7.4E-12 2.5E-16 115.8 29.0 180 221-403 78-281 (286)
170 2xdw_A Prolyl endopeptidase; a 99.5 2.3E-12 7.8E-17 135.2 28.6 228 217-445 122-416 (710)
171 3fvz_A Peptidyl-glycine alpha- 99.5 1.3E-11 4.3E-16 116.8 30.8 164 218-401 141-321 (329)
172 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.5E-12 5.1E-17 125.1 20.4 203 220-447 40-296 (365)
173 3c5m_A Oligogalacturonate lyas 99.5 6.9E-13 2.4E-17 128.5 17.9 209 226-441 87-380 (396)
174 3e5z_A Putative gluconolactona 99.5 8E-12 2.7E-16 116.2 24.3 224 214-443 22-286 (296)
175 4a5s_A Dipeptidyl peptidase 4 99.5 7E-13 2.4E-17 139.7 18.7 193 222-445 19-296 (740)
176 3pe7_A Oligogalacturonate lyas 99.5 3.3E-12 1.1E-16 123.5 22.1 222 214-447 25-277 (388)
177 2dg1_A DRP35, lactonase; beta 99.5 8.5E-11 2.9E-15 111.1 30.8 220 213-434 38-301 (333)
178 2bkl_A Prolyl endopeptidase; m 99.5 2.5E-12 8.5E-17 134.5 20.9 226 217-445 118-399 (695)
179 3azo_A Aminopeptidase; POP fam 99.5 5.4E-12 1.9E-16 131.2 23.2 229 215-445 19-327 (662)
180 1rwi_B Serine/threonine-protei 99.5 2.9E-11 1E-15 110.5 25.4 222 221-445 25-266 (270)
181 1qks_A Cytochrome CD1 nitrite 99.5 3.5E-10 1.2E-14 114.3 35.3 239 223-465 243-557 (567)
182 3no2_A Uncharacterized protein 99.4 4.5E-11 1.5E-15 109.9 24.6 211 230-447 4-256 (276)
183 2z2n_A Virginiamycin B lyase; 99.4 3.3E-09 1.1E-13 98.1 36.8 217 222-444 59-296 (299)
184 2gop_A Trilobed protease; beta 99.4 3.2E-11 1.1E-15 114.6 22.6 211 220-445 59-332 (347)
185 3c5m_A Oligogalacturonate lyas 99.4 2.4E-12 8.1E-17 124.7 13.6 218 221-447 37-277 (396)
186 3dsm_A Uncharacterized protein 99.4 3.7E-10 1.3E-14 106.6 28.3 227 222-454 46-312 (328)
187 2bkl_A Prolyl endopeptidase; m 99.4 1.4E-11 4.9E-16 128.8 18.9 177 225-405 173-400 (695)
188 3e5z_A Putative gluconolactona 99.4 3.8E-10 1.3E-14 104.8 26.5 178 222-407 71-291 (296)
189 2xdw_A Prolyl endopeptidase; a 99.3 4.8E-10 1.6E-14 117.5 26.0 161 218-404 231-416 (710)
190 2z2n_A Virginiamycin B lyase; 99.3 9.5E-09 3.3E-13 95.0 31.7 225 215-445 10-256 (299)
191 1yr2_A Prolyl oligopeptidase; 99.3 2.4E-10 8.2E-15 120.3 23.2 225 217-445 160-443 (741)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.7E-09 9.3E-14 99.6 27.9 225 217-443 15-299 (314)
193 2gop_A Trilobed protease; beta 99.3 5E-10 1.7E-14 106.4 22.6 207 220-446 15-294 (347)
194 3no2_A Uncharacterized protein 99.3 1.7E-09 5.7E-14 99.3 25.0 165 224-392 41-232 (276)
195 2dg1_A DRP35, lactonase; beta 99.3 5.9E-10 2E-14 105.3 21.0 223 221-451 7-270 (333)
196 2qc5_A Streptogramin B lactona 99.2 8.8E-08 3E-12 88.4 33.0 223 217-445 17-261 (300)
197 2qc5_A Streptogramin B lactona 99.2 1.5E-07 5E-12 86.9 34.5 214 222-441 64-298 (300)
198 1rwi_B Serine/threonine-protei 99.2 4.5E-09 1.5E-13 95.8 23.2 178 223-404 70-266 (270)
199 2mad_H Methylamine dehydrogena 99.2 7.8E-08 2.7E-12 92.1 32.0 217 224-449 70-356 (373)
200 1qks_A Cytochrome CD1 nitrite 99.2 1.9E-08 6.6E-13 101.5 27.4 195 229-452 165-382 (567)
201 1xip_A Nucleoporin NUP159; bet 99.1 1.4E-09 4.8E-14 103.7 17.1 170 221-429 39-230 (388)
202 3hrp_A Uncharacterized protein 99.1 9.2E-08 3.2E-12 92.9 28.3 217 220-441 131-408 (409)
203 3sjl_D Methylamine dehydrogena 99.1 2.3E-08 7.8E-13 95.0 23.0 229 224-453 82-373 (386)
204 3g4e_A Regucalcin; six bladed 99.1 1.4E-07 4.9E-12 87.4 28.2 214 215-432 8-262 (297)
205 3iuj_A Prolyl endopeptidase; h 99.1 1E-08 3.5E-13 107.0 22.2 223 217-445 126-407 (693)
206 1yr2_A Prolyl oligopeptidase; 99.0 9.3E-09 3.2E-13 108.2 20.4 161 241-405 243-444 (741)
207 3dsm_A Uncharacterized protein 99.0 8.1E-08 2.8E-12 90.5 22.9 200 239-446 15-256 (328)
208 2hz6_A Endoplasmic reticulum t 98.9 1.6E-10 5.3E-15 111.0 1.0 188 230-451 8-200 (369)
209 3c75_H MADH, methylamine dehyd 98.9 7.5E-08 2.6E-12 93.1 18.9 225 224-450 122-409 (426)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 5E-07 1.7E-11 84.0 24.0 176 221-402 72-299 (314)
211 2qe8_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 93.3 16.2 211 220-445 17-280 (343)
212 1mda_H Methylamine dehydrogena 98.9 3.3E-08 1.1E-12 94.0 15.0 231 210-453 57-356 (368)
213 2ghs_A AGR_C_1268P; regucalcin 98.9 2.9E-06 1E-10 79.6 28.4 208 220-433 49-293 (326)
214 3dr2_A Exported gluconolactona 98.9 4.7E-07 1.6E-11 84.2 22.1 217 214-437 39-301 (305)
215 3hrp_A Uncharacterized protein 98.8 2.3E-06 7.8E-11 83.1 26.8 174 225-399 176-407 (409)
216 1xip_A Nucleoporin NUP159; bet 98.8 1.4E-07 4.8E-12 89.9 17.3 133 218-389 87-230 (388)
217 3sjl_D Methylamine dehydrogena 98.8 6.3E-07 2.1E-11 85.1 20.7 225 228-454 41-331 (386)
218 2mad_H Methylamine dehydrogena 98.8 1.2E-05 4.1E-10 76.9 29.6 222 228-453 29-317 (373)
219 1kb0_A Quinohemoprotein alcoho 98.8 2.7E-07 9.1E-12 95.6 18.9 221 231-453 128-517 (677)
220 3iuj_A Prolyl endopeptidase; h 98.7 1.1E-06 3.9E-11 91.5 22.9 159 218-405 232-408 (693)
221 1yiq_A Quinohemoprotein alcoho 98.7 6.4E-07 2.2E-11 93.0 20.3 223 231-453 121-515 (689)
222 3c75_H MADH, methylamine dehyd 98.7 1.2E-05 4.2E-10 77.6 26.2 180 225-409 182-409 (426)
223 3q7m_A Lipoprotein YFGL, BAMB; 98.7 7.4E-06 2.5E-10 78.4 24.4 215 230-452 102-346 (376)
224 3dr2_A Exported gluconolactona 98.6 1.1E-05 3.9E-10 74.7 23.0 170 222-399 88-303 (305)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.6 3.1E-05 1E-09 74.1 26.1 210 231-450 53-303 (376)
226 2hz6_A Endoplasmic reticulum t 98.6 4.6E-08 1.6E-12 93.7 5.4 204 230-442 48-278 (369)
227 2qe8_A Uncharacterized protein 98.5 2E-06 6.8E-11 81.4 15.5 219 217-439 64-317 (343)
228 3g4e_A Regucalcin; six bladed 98.5 5.2E-05 1.8E-09 69.9 24.8 188 260-453 11-239 (297)
229 1mda_H Methylamine dehydrogena 98.5 8.2E-06 2.8E-10 77.4 19.0 176 225-413 129-357 (368)
230 3hxj_A Pyrrolo-quinoline quino 98.5 2.7E-06 9.2E-11 79.6 14.7 209 226-450 26-250 (330)
231 2iwa_A Glutamine cyclotransfer 98.4 0.00027 9.3E-09 63.4 25.6 190 222-443 23-237 (266)
232 3hxj_A Pyrrolo-quinoline quino 98.4 1.6E-05 5.3E-10 74.4 18.5 203 231-443 107-324 (330)
233 1kv9_A Type II quinohemoprotei 98.3 3.6E-05 1.2E-09 79.5 19.6 221 231-453 117-498 (668)
234 1npe_A Nidogen, entactin; glyc 98.3 0.0014 4.9E-08 59.0 28.3 206 220-451 36-246 (267)
235 2ece_A 462AA long hypothetical 98.2 9.2E-05 3.2E-09 71.0 19.2 194 224-431 142-399 (462)
236 3nol_A Glutamine cyclotransfer 98.2 0.00075 2.5E-08 59.9 23.6 175 222-430 45-243 (262)
237 1yiq_A Quinohemoprotein alcoho 98.2 7.9E-05 2.7E-09 77.2 19.9 201 224-425 239-529 (689)
238 2ghs_A AGR_C_1268P; regucalcin 98.2 0.001 3.5E-08 62.1 24.7 178 264-451 51-267 (326)
239 3nok_A Glutaminyl cyclase; bet 98.1 0.0019 6.6E-08 57.3 22.9 177 222-431 57-254 (268)
240 2ad6_A Methanol dehydrogenase 98.0 0.00029 9.8E-09 71.3 19.5 109 345-453 319-504 (571)
241 1w6s_A Methanol dehydrogenase 98.0 0.00035 1.2E-08 70.7 19.8 60 394-453 454-513 (599)
242 1kb0_A Quinohemoprotein alcoho 98.0 0.00067 2.3E-08 70.1 20.9 185 240-425 189-531 (677)
243 1fwx_A Nitrous oxide reductase 97.9 0.00022 7.4E-09 70.9 15.8 215 229-452 99-380 (595)
244 4a2l_A BT_4663, two-component 97.9 0.02 7E-07 60.3 32.0 222 219-445 214-482 (795)
245 3mbr_X Glutamine cyclotransfer 97.9 0.01 3.5E-07 52.1 25.6 177 221-430 22-222 (243)
246 2xe4_A Oligopeptidase B; hydro 97.9 0.00026 8.9E-09 74.3 16.9 195 221-440 175-395 (751)
247 2fp8_A Strictosidine synthase; 97.9 0.0041 1.4E-07 57.7 23.5 219 221-444 20-314 (322)
248 1k3i_A Galactose oxidase precu 97.9 0.00071 2.4E-08 69.8 19.5 221 224-445 190-499 (656)
249 3nol_A Glutamine cyclotransfer 97.9 0.00085 2.9E-08 59.5 16.7 176 264-473 45-235 (262)
250 4a2l_A BT_4663, two-component 97.8 0.011 3.9E-07 62.3 28.1 219 222-445 175-438 (795)
251 2ece_A 462AA long hypothetical 97.8 0.003 1E-07 60.6 20.6 217 229-452 93-364 (462)
252 1flg_A Protein (quinoprotein e 97.8 0.0024 8.3E-08 64.6 21.3 60 394-453 467-526 (582)
253 2iwa_A Glutamine cyclotransfer 97.8 0.0013 4.5E-08 58.9 16.9 160 263-453 22-191 (266)
254 2p4o_A Hypothetical protein; p 97.8 0.025 8.5E-07 52.0 27.5 208 220-432 32-277 (306)
255 1npe_A Nidogen, entactin; glyc 97.7 0.022 7.4E-07 51.1 25.4 185 232-445 2-200 (267)
256 3nok_A Glutaminyl cyclase; bet 97.7 0.0029 1E-07 56.1 18.2 178 263-473 56-245 (268)
257 3mbr_X Glutamine cyclotransfer 97.7 0.005 1.7E-07 54.0 19.5 191 254-476 12-218 (243)
258 1fwx_A Nitrous oxide reductase 97.7 0.00057 2E-08 67.9 14.9 199 220-444 134-432 (595)
259 3v65_B Low-density lipoprotein 97.7 0.044 1.5E-06 52.2 28.2 208 219-451 115-326 (386)
260 3v64_C Agrin; beta propeller, 97.6 0.045 1.5E-06 51.4 27.8 206 220-451 73-283 (349)
261 2xe4_A Oligopeptidase B; hydro 97.6 0.017 5.9E-07 60.4 25.3 68 226-293 227-305 (751)
262 3v9f_A Two-component system se 97.5 0.071 2.4E-06 56.0 28.9 222 219-445 257-526 (781)
263 3v9f_A Two-component system se 97.5 0.12 4.1E-06 54.3 29.7 221 220-445 211-480 (781)
264 3qqz_A Putative uncharacterize 97.5 0.053 1.8E-06 48.1 28.8 209 214-440 21-250 (255)
265 2ad6_A Methanol dehydrogenase 97.5 0.011 3.9E-07 59.5 20.6 168 242-411 273-503 (571)
266 2xbg_A YCF48-like protein; pho 97.4 0.042 1.4E-06 51.0 22.4 189 220-440 122-319 (327)
267 3sov_A LRP-6, low-density lipo 97.4 0.085 2.9E-06 48.7 24.9 206 220-451 35-246 (318)
268 1kv9_A Type II quinohemoprotei 97.4 0.0057 1.9E-07 63.1 17.7 188 223-412 233-498 (668)
269 1flg_A Protein (quinoprotein e 97.3 0.02 6.7E-07 57.9 20.8 201 224-425 250-540 (582)
270 3p5b_L Low density lipoprotein 97.3 0.14 4.7E-06 49.0 28.4 209 218-451 110-328 (400)
271 1w6s_A Methanol dehydrogenase 97.2 0.036 1.2E-06 56.1 21.1 184 225-410 246-511 (599)
272 1ijq_A LDL receptor, low-densi 97.2 0.15 5E-06 47.0 27.1 206 220-451 30-246 (316)
273 3amr_A 3-phytase; beta-propell 97.1 0.17 5.7E-06 46.9 23.3 200 229-451 38-272 (355)
274 2fp8_A Strictosidine synthase; 96.8 0.18 6E-06 46.4 20.4 183 264-452 21-277 (322)
275 3m0c_C LDL receptor, low-densi 96.8 0.67 2.3E-05 48.4 29.6 208 218-450 422-639 (791)
276 1k3i_A Galactose oxidase precu 96.7 0.035 1.2E-06 57.0 15.9 210 221-432 244-530 (656)
277 3tc9_A Hypothetical hydrolase; 96.5 0.57 1.9E-05 45.2 22.6 216 222-441 139-428 (430)
278 2p9w_A MAL S 1 allergenic prot 96.5 0.48 1.6E-05 43.4 20.4 198 223-442 16-264 (334)
279 3v64_C Agrin; beta propeller, 96.5 0.57 2E-05 43.7 25.6 194 222-444 36-235 (349)
280 3v65_B Low-density lipoprotein 96.2 0.84 2.9E-05 43.2 23.5 192 223-443 80-277 (386)
281 3qqz_A Putative uncharacterize 96.1 0.42 1.4E-05 42.3 17.4 179 256-453 21-213 (255)
282 3s94_A LRP-6, low-density lipo 96.0 1.4 4.7E-05 44.7 22.7 206 219-449 39-249 (619)
283 4hw6_A Hypothetical protein, I 96.0 0.81 2.8E-05 44.1 20.2 194 222-445 141-375 (433)
284 4hw6_A Hypothetical protein, I 95.9 1.3 4.4E-05 42.7 23.8 214 217-442 179-432 (433)
285 1n7d_A LDL receptor, low-densi 95.5 0.029 9.9E-07 58.0 8.2 205 220-450 406-621 (699)
286 2vpj_A Kelch-like protein 12; 95.2 1.5 5E-05 39.6 17.9 210 230-445 14-280 (301)
287 4a0p_A LRP6, LRP-6, low-densit 95.1 3.2 0.00011 42.0 26.4 204 220-450 37-244 (628)
288 3tc9_A Hypothetical hydrolase; 94.9 0.97 3.3E-05 43.5 16.5 152 263-442 138-300 (430)
289 3kya_A Putative phosphatase; s 94.8 3.3 0.00011 40.4 23.0 62 221-282 140-213 (496)
290 3sov_A LRP-6, low-density lipo 94.8 2.4 8.3E-05 38.7 21.5 110 222-333 81-194 (318)
291 2xzh_A Clathrin heavy chain 1; 94.2 3.3 0.00011 37.9 24.2 206 225-453 72-300 (365)
292 2xn4_A Kelch-like protein 2; s 94.2 3.1 0.00011 37.4 17.8 208 232-445 17-278 (302)
293 3m0c_C LDL receptor, low-densi 94.0 6.8 0.00023 40.8 25.9 178 240-444 403-590 (791)
294 3ii7_A Kelch-like protein 7; p 93.7 3.8 0.00013 36.8 19.1 207 232-445 13-274 (306)
295 3p5b_L Low density lipoprotein 93.3 5.7 0.00019 37.6 26.5 175 218-420 157-338 (400)
296 1ijq_A LDL receptor, low-densi 93.2 4.9 0.00017 36.6 27.7 176 241-443 10-195 (316)
297 2p4o_A Hypothetical protein; p 92.9 5.2 0.00018 36.1 29.3 166 223-391 75-277 (306)
298 3kya_A Putative phosphatase; s 92.5 8.4 0.00029 37.6 22.6 216 220-448 186-480 (496)
299 3s94_A LRP-6, low-density lipo 92.4 10 0.00035 38.3 24.3 200 220-444 349-552 (619)
300 3ei3_A DNA damage-binding prot 92.3 15 0.00052 40.1 27.7 221 224-449 331-597 (1158)
301 3pbp_A Nucleoporin NUP82; beta 92.3 2.4 8.1E-05 40.3 13.3 94 351-444 40-159 (452)
302 3a9g_A Putative uncharacterize 91.6 8.5 0.00029 35.7 23.1 103 219-323 28-152 (354)
303 1n7d_A LDL receptor, low-densi 91.5 0.48 1.6E-05 48.9 8.5 161 222-410 455-622 (699)
304 2xbg_A YCF48-like protein; pho 91.4 8.3 0.00028 35.2 27.5 217 219-446 35-281 (327)
305 1bpo_A Protein (clathrin); cla 91.2 11 0.00036 36.0 25.8 202 225-453 71-299 (494)
306 2p9w_A MAL S 1 allergenic prot 90.8 4.5 0.00015 37.0 13.2 114 222-335 65-214 (334)
307 1zgk_A Kelch-like ECH-associat 90.4 9.8 0.00033 34.2 16.4 210 230-445 24-289 (308)
308 4a0p_A LRP6, LRP-6, low-densit 89.7 19 0.00064 36.4 28.4 206 220-451 340-557 (628)
309 3sre_A PON1, serum paraoxonase 88.9 15 0.0005 34.1 18.7 90 351-443 138-252 (355)
310 3ii7_A Kelch-like protein 7; p 88.7 12 0.00042 33.4 14.9 64 230-294 55-129 (306)
311 2ism_A Putative oxidoreductase 88.1 16 0.00055 33.7 23.2 101 220-323 31-152 (352)
312 1xi4_A Clathrin heavy chain; a 86.7 13 0.00044 41.2 15.1 202 227-451 73-297 (1630)
313 2vpj_A Kelch-like protein 12; 86.4 14 0.00049 32.8 13.9 170 230-404 62-280 (301)
314 2be1_A Serine/threonine-protei 85.2 3.6 0.00012 37.9 9.0 122 231-369 10-138 (339)
315 3amr_A 3-phytase; beta-propell 84.0 18 0.00061 33.4 12.9 68 223-291 131-209 (355)
316 2be1_A Serine/threonine-protei 82.6 1.9 6.6E-05 39.7 6.0 111 343-453 11-140 (339)
317 1zgk_A Kelch-like ECH-associat 82.4 21 0.00073 31.9 13.1 169 230-404 70-289 (308)
318 2xn4_A Kelch-like protein 2; s 82.1 27 0.00091 31.0 15.1 170 230-404 61-278 (302)
319 1tl2_A L10, protein (tachylect 80.6 2.1 7.1E-05 36.7 4.9 102 221-329 42-156 (236)
320 2uvk_A YJHT; unknown function, 80.4 34 0.0011 31.2 14.0 64 230-294 19-97 (357)
321 3ei3_A DNA damage-binding prot 79.9 74 0.0025 34.7 29.6 73 219-291 553-635 (1158)
322 4gq2_M Nucleoporin NUP120; bet 79.2 2.2 7.6E-05 45.6 5.8 38 35-72 237-274 (950)
323 1tl2_A L10, protein (tachylect 79.1 7.9 0.00027 33.2 8.0 68 373-443 41-116 (236)
324 3ott_A Two-component system se 79.1 62 0.0021 33.3 23.3 191 220-444 63-261 (758)
325 4asc_A Kelch repeat and BTB do 75.7 44 0.0015 29.8 18.6 60 233-294 7-78 (315)
326 3pbp_A Nucleoporin NUP82; beta 74.5 60 0.0021 30.8 20.9 106 229-336 30-158 (452)
327 1cru_A Protein (soluble quinop 73.7 65 0.0022 30.9 20.5 105 220-324 27-162 (454)
328 4fhn_B Nucleoporin NUP120; pro 73.4 2.4 8.2E-05 46.4 4.3 39 34-72 238-276 (1139)
329 2woz_A Kelch repeat and BTB do 73.2 51 0.0017 29.4 18.8 199 242-445 25-289 (318)
330 3sre_A PON1, serum paraoxonase 72.6 60 0.002 29.9 20.6 216 221-451 51-308 (355)
331 2zwa_A Leucine carboxyl methyl 71.7 92 0.0031 31.7 17.7 66 229-294 396-479 (695)
332 3f7f_A Nucleoporin NUP120; nuc 69.7 5.3 0.00018 40.6 5.4 37 35-73 223-259 (729)
333 3das_A Putative oxidoreductase 66.3 80 0.0027 29.0 19.2 55 262-316 32-90 (347)
334 2g8s_A Glucose/sorbosone dehyd 64.3 87 0.003 28.6 23.3 50 221-272 19-76 (353)
335 2g8s_A Glucose/sorbosone dehyd 63.7 89 0.003 28.6 18.2 53 263-316 19-76 (353)
336 4gq2_M Nucleoporin NUP120; bet 63.2 12 0.0004 40.0 6.9 38 220-257 236-273 (950)
337 2zwa_A Leucine carboxyl methyl 61.2 1.5E+02 0.005 30.2 15.4 65 230-294 451-524 (695)
338 3ott_A Two-component system se 56.7 1.8E+02 0.0061 29.8 29.4 215 221-442 192-447 (758)
339 3f7f_A Nucleoporin NUP120; nuc 55.7 20 0.00069 36.5 6.6 38 220-259 222-259 (729)
340 4asc_A Kelch repeat and BTB do 54.5 1.2E+02 0.0039 26.9 16.0 130 229-362 44-222 (315)
341 4fhn_B Nucleoporin NUP120; pro 50.7 12 0.0004 41.0 4.4 38 221-258 239-276 (1139)
342 3qhy_B Beta-lactamase inhibito 49.5 1.4E+02 0.0046 26.3 17.9 190 240-443 41-246 (282)
343 1cru_A Protein (soluble quinop 49.2 1.8E+02 0.0062 27.7 22.0 55 262-316 27-87 (454)
344 2ism_A Putative oxidoreductase 49.2 1.5E+02 0.0053 26.9 13.4 69 374-444 32-115 (352)
345 2woz_A Kelch repeat and BTB do 46.0 1.6E+02 0.0054 26.0 14.1 64 230-294 109-186 (318)
346 2wg3_C Hedgehog-interacting pr 45.0 1.1E+02 0.0037 29.4 9.8 104 222-325 16-158 (463)
347 3zwu_A Alkaline phosphatase PH 42.0 96 0.0033 30.9 9.0 57 223-279 479-548 (592)
348 3a9g_A Putative uncharacterize 40.6 2.1E+02 0.0073 26.0 11.0 71 373-444 29-115 (354)
349 3sbq_A Nitrous-oxide reductase 40.3 86 0.0029 31.0 7.9 73 263-335 324-407 (638)
350 2wg3_C Hedgehog-interacting pr 40.2 2.5E+02 0.0087 26.8 15.6 54 263-316 15-79 (463)
351 3das_A Putative oxidoreductase 40.2 2.2E+02 0.0074 26.0 28.4 110 214-323 26-157 (347)
352 2xzh_A Clathrin heavy chain 1; 40.0 2.2E+02 0.0076 26.0 11.1 71 222-292 262-332 (365)
353 2uvk_A YJHT; unknown function, 27.9 3.3E+02 0.011 24.3 13.1 49 241-290 168-224 (357)
354 4a9v_A PHOX; hydrolase, beta-p 25.9 2.9E+02 0.01 27.3 9.2 59 221-279 477-548 (592)
355 1suu_A DNA gyrase subunit A; t 25.7 3.6E+02 0.012 24.0 21.5 170 271-442 6-230 (312)
356 1bpo_A Protein (clathrin); cla 24.6 4.7E+02 0.016 25.0 12.3 71 222-292 261-331 (494)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-44 Score=370.08 Aligned_cols=362 Identities=17% Similarity=0.294 Sum_probs=269.4
Q ss_pred EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895 25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER 102 (479)
Q Consensus 25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (479)
..+.|.||.+.|++++|+|+|++||||+.|++|||||+.+++ ...++.+|.+.|.++.|+++... ++
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~-----l~------ 119 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR-----IA------ 119 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE-----EE------
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE-----EE------
Confidence 455788999999999999999999999999999999997654 35678899999999999876532 11
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
..+.. ....+.+++|+.... ...+ ..+...+....+ .|.....++..
T Consensus 120 ---~~~~~---------~~~~~~v~~wd~~~~----~~~l-~gh~~~v~~v~f----------------~p~~~~~l~s~ 166 (611)
T 1nr0_A 120 ---AVGEG---------RERFGHVFLFDTGTS----NGNL-TGQARAMNSVDF----------------KPSRPFRIISG 166 (611)
T ss_dssp ---EEECC---------SSCSEEEEETTTCCB----CBCC-CCCSSCEEEEEE----------------CSSSSCEEEEE
T ss_pred ---EEECC---------CCceeEEEEeeCCCC----ccee-cCCCCCceEEEE----------------CCCCCeEEEEE
Confidence 11100 001235666663210 0000 001111222222 22111122222
Q ss_pred CCCchhHHHHHhHhcCCCCCCCCC-CcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe---
Q psy8895 183 TASNTQIIQQAKAKALPMPKPQWH-APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT--- 258 (479)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--- 258 (479)
+.+....+ |. .+.+....+.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++....+.
T Consensus 167 s~D~~v~l--------------wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 167 SDDNTVAI--------------FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp ETTSCEEE--------------EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred eCCCeEEE--------------EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence 22111111 11 2345567889999999999999999999999999999999999999888874
Q ss_pred ----cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC-----------------------------------
Q psy8895 259 ----GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP----------------------------------- 299 (479)
Q Consensus 259 ----~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------------- 299 (479)
+|.+.|.+++|+|++++|++++.|++|++||+++.+.....
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 79999999999999999999999999999999865432100
Q ss_pred ------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------------
Q psy8895 300 ------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------------------------- 338 (479)
Q Consensus 300 ------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------------------------- 338 (479)
....+...|.+++|+|+++.+++++.|++|++|+.....
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 012456789999999999999999999999999864310
Q ss_pred ----------------------------------------------------------------CCCCCeEEEEeCCCcE
Q psy8895 339 ----------------------------------------------------------------TEESHPVITGSHDCTI 354 (479)
Q Consensus 339 ----------------------------------------------------------------~~~~~~l~sgs~d~~v 354 (479)
.+++..+++|+.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 0123468899999999
Q ss_pred EEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC-CeEEee--ecCCcceEEEEEEcCCC-EE
Q psy8895 355 RLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE-GKFIQN--LPGHNAIINSICVNNEG-VL 427 (479)
Q Consensus 355 ~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~-~~~~~~--~~~h~~~v~~l~~~~~~-~l 427 (479)
++||+..++. +.. .+|...|++++|+|++++|++++.|. +++|+..+ +++... +.+|...|++++|+||+ +|
T Consensus 473 ~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~l 551 (611)
T 1nr0_A 473 HVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551 (611)
T ss_dssp EEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred EEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEE
Confidence 9999987643 334 67999999999999999999998885 99999987 666554 34599999999999999 89
Q ss_pred EEEeCCCcEEEEecCCCe
Q psy8895 428 VSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 428 ~sg~~dg~i~lWd~~~~~ 445 (479)
++|+.|++|++||++++.
T Consensus 552 asgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEETTSCEEEEETTCTT
T ss_pred EEEECCCcEEEEECCCcc
Confidence 999999999999998764
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.6e-43 Score=362.48 Aligned_cols=347 Identities=20% Similarity=0.270 Sum_probs=273.4
Q ss_pred CcccccCc--eEEEeecccceeEeeEE----------------------------eeecCCcccceEEEEEccCCc-eEE
Q psy8895 1 VWDLATGK--LKLSLTGHVGSVRGLTV----------------------------IRHYHGHLSSVNTISLHPTID-VLI 49 (479)
Q Consensus 1 ~Wd~~~~~--~~~~~~g~~~~v~~~~~----------------------------~~~~~gH~~~V~~l~~sp~g~-~la 49 (479)
|||+.+++ ++.++.+|.+.|.++.+ ...+.||.+.|++++|+|+++ .||
T Consensus 85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 69987554 45678999998887642 124679999999999999987 599
Q ss_pred EecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccch
Q psy8895 50 TAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPW 129 (479)
Q Consensus 50 Sgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 129 (479)
|||.|++|++||..+++.+.++.+|...|.++.|+++... +.+...++++++|
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~---------------------------las~s~D~~i~lw 217 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL---------------------------FASTGGDGTIVLY 217 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE---------------------------EEEEETTSCEEEE
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE---------------------------EEEEECCCcEEEE
Confidence 9999999999999999999999999999999999876431 1122355788888
Q ss_pred hhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcc
Q psy8895 130 QLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPW 209 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (479)
+....+. . .. + . . . . .
T Consensus 218 d~~~g~~-------------~-----~~---------------------~-~--~-~-~----------------~---- 233 (611)
T 1nr0_A 218 NGVDGTK-------------T-----GV---------------------F-E--D-D-S----------------L---- 233 (611)
T ss_dssp ETTTCCE-------------E-----EE---------------------C-B--C-T-T----------------S----
T ss_pred ECCCCcE-------------e-----ee---------------------e-c--c-c-c----------------c----
Confidence 7532100 0 00 0 0 0 0 0 0
Q ss_pred eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE----------------------------------
Q psy8895 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL---------------------------------- 255 (479)
Q Consensus 210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~---------------------------------- 255 (479)
...+|.+.|.+++|+|+|++|++++.|++|++||+.++++..
T Consensus 234 ----~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 234 ----KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp ----SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred ----cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 012699999999999999999999999999999998876543
Q ss_pred ---------EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-------------------------
Q psy8895 256 ---------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS------------------------- 301 (479)
Q Consensus 256 ---------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------- 301 (479)
.+.+|...|.+++|+|++++|++++.|++|++||+.+++.......
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~ 389 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence 3457999999999999999999999999999999875432110000
Q ss_pred -------------------------------------------------------CCCCCCeEEEEEeCCCCEEEEEeCC
Q psy8895 302 -------------------------------------------------------MDSESGIFSMTFDNSGSRLITTEAD 326 (479)
Q Consensus 302 -------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d 326 (479)
..+...+.+++|+|+++.+++++.|
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D 469 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence 0011346789999999999999999
Q ss_pred CeEEEEeCCCCC------------------CCCCCeEEEEeCCCcEEEEECCC-CeeEEE--EccCCCceEEEEEeCCCc
Q psy8895 327 KTVKLYKEDDSA------------------TEESHPVITGSHDCTIRLWDLAA-GKSLCT--LTNHKKSVRSVALHPTLY 385 (479)
Q Consensus 327 ~~i~~~~~~~~~------------------~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~--~~~h~~~v~~i~~~~~~~ 385 (479)
++|++|+..... .+++..|++++.|++|++||+.+ ++.+.. +..|...|++++|+|+++
T Consensus 470 ~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence 999999975421 23567899999999999999987 555544 334999999999999999
Q ss_pred EEEEEcCCc-EEEEeCCCCe-EE-eeecCC-cceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895 386 MFASASPDN-IKQWKCPEGK-FI-QNLPGH-NAIINSICVNNEGVLVSGADNGTMCFWDWR 442 (479)
Q Consensus 386 ~l~s~s~d~-i~~w~~~~~~-~~-~~~~~h-~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~ 442 (479)
+|++++.|+ |++|++.++. .. ..+.+| ...|.+++|+|++.|++++.|++|++||+.
T Consensus 550 ~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence 999999885 9999998765 33 667899 899999999999999999999999999973
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-43 Score=347.73 Aligned_cols=307 Identities=26% Similarity=0.456 Sum_probs=253.1
Q ss_pred eecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV 106 (479)
Q Consensus 27 ~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (479)
..+.||.++|++++|+|++++|||||.|++|+|||+.+++.+.++.+|.+.|.++.|.+++..
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~----------------- 164 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL----------------- 164 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE-----------------
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-----------------
Confidence 356799999999999999999999999999999999999999999999999999999765321
Q ss_pred ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895 107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN 186 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (479)
+.+...++++++|+....
T Consensus 165 ----------l~sgs~D~~i~iwd~~~~---------------------------------------------------- 182 (410)
T 1vyh_C 165 ----------LASCSADMTIKLWDFQGF---------------------------------------------------- 182 (410)
T ss_dssp ----------EEEEETTSCCCEEETTSS----------------------------------------------------
T ss_pred ----------EEEEeCCCeEEEEeCCCC----------------------------------------------------
Confidence 112234577888865310
Q ss_pred hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE
Q psy8895 187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266 (479)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~ 266 (479)
+..+.+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.+
T Consensus 183 -----------------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 183 -----------------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp -----------------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -----------------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 112245679999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI 346 (479)
Q Consensus 267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~ 346 (479)
++++|++.++++|+.|++|++||+++.+..... ..+...+.++.|+|+..+.......+.. ..........++
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~l~ 312 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSE-----TKKSGKPGPFLL 312 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC------------CCEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeEe--cCCCceEEEEEEcCcccccchhhhcccc-----ccccCCCCCEEE
Confidence 999999999999999999999999876544322 2456789999999865321110000000 000011246799
Q ss_pred EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC
Q psy8895 347 TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG 425 (479)
Q Consensus 347 sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~ 425 (479)
+|+.|++|++||+++++++.++.+|...|++++|+|++.+|++++.|+ |++||..+++++..+.+|...|++++|+|++
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999998885 9999999999999999999999999999998
Q ss_pred -EEEEEeCCCcEEEEecC
Q psy8895 426 -VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 426 -~l~sg~~dg~i~lWd~~ 442 (479)
+|++|+.||+|++|+.+
T Consensus 393 ~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEETTSEEEEEC--
T ss_pred CEEEEEeCCCcEEEEeCC
Confidence 89999999999999863
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-41 Score=345.23 Aligned_cols=412 Identities=28% Similarity=0.478 Sum_probs=288.1
Q ss_pred ceEEEeecccceeEeeE-------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEee
Q psy8895 8 KLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDV 62 (479)
Q Consensus 8 ~~~~~~~g~~~~v~~~~-------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~ 62 (479)
+..+.|.||.+.|+++. +++++.||.++|++|+|+|||++|||++.|++|+|||+
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 44577999999999875 36678899999999999999999999999999999995
Q ss_pred cccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceee-------------------eccccccc
Q psy8895 63 RTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLS-------------------CLPSLLDF 123 (479)
Q Consensus 63 ~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 123 (479)
+++.+.++.+|...|.++.|.++.... .....+..+........... .+......
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDGQTI-----ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEE-----EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCCEE-----EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 678899999999999999998765431 11111111111110000000 00001111
Q ss_pred ccccchhhhhhhhhcccchhhhhccceeeEEeeccc----------------c---------ccceeccccccccccccc
Q psy8895 124 GTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLK----------------R---------THDMFISCQELVPSTENQ 178 (479)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------~~~~~~~~~~~~~~~~~~ 178 (479)
+.+++|......... .......+....+.+.. . .+...+....+.+ ....
T Consensus 161 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~-dg~~ 235 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQT----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQT 235 (577)
T ss_dssp SEEEEECTTSCEEEE----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSC
T ss_pred cceeccccceeeeee----ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECC-CCCE
Confidence 122222211000000 00000000000000000 0 0000000000111 1111
Q ss_pred cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895 179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258 (479)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~ 258 (479)
++....+.. + ..|....+....+.+|...|.+++|+|+++++++++.|+.|++||. +++....+.
T Consensus 236 l~~~~~d~~-i-------------~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~ 300 (577)
T 2ymu_A 236 IASASDDKT-V-------------KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT 300 (577)
T ss_dssp EEEEETTSC-E-------------EEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC
T ss_pred EEEEeCCCE-E-------------EEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe
Confidence 111111110 0 1244445666788999999999999999999999999999999996 467778899
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA 338 (479)
Q Consensus 259 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 338 (479)
+|...|.+++|+|++.++++++.|+.|++||......... ..+...+.+++|+|++..+++++.++.+++|+.....
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~ 377 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 377 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE
Confidence 9999999999999999999999999999999865433221 2456789999999999999999999999999964321
Q ss_pred ----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCC
Q psy8895 339 ----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCP 401 (479)
Q Consensus 339 ----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~ 401 (479)
.+++..+++++.|++|++||. +++.+.++.+|...|++++|+|++.++++++.|. +++|+.
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~- 455 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR- 455 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-
Confidence 134567999999999999995 4678888999999999999999999999998885 999996
Q ss_pred CCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 402 EGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 402 ~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+++.+..+.+|...|.+++|+|++ +|++++.|++|++||. +++.++.++
T Consensus 456 ~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 677888999999999999999999 8999999999999995 677766553
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-41 Score=326.65 Aligned_cols=291 Identities=23% Similarity=0.387 Sum_probs=242.6
Q ss_pred EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI 103 (479)
Q Consensus 24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (479)
...+++.||.++|++++|+|++++|+|||.|++|+|||+.+++.+.++..|...+.++.|.++... +
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l-------- 112 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY-----V-------- 112 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSE-----E--------
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCE-----E--------
Confidence 356678999999999999999999999999999999999999999999999999999998775421 1
Q ss_pred EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895 104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT 183 (479)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (479)
.+...++.+++|++...+
T Consensus 113 --------------~s~~~d~~v~iw~~~~~~------------------------------------------------ 130 (340)
T 1got_B 113 --------------ACGGLDNICSIYNLKTRE------------------------------------------------ 130 (340)
T ss_dssp --------------EEEETTCEEEEEETTTCS------------------------------------------------
T ss_pred --------------EEEeCCCeEEEEECccCC------------------------------------------------
Confidence 111234566666542100
Q ss_pred CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895 184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS 263 (479)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~ 263 (479)
...+....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...
T Consensus 131 -----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 131 -----------------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp -----------------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -----------------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 00122345678999999999998775 899999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895 264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH 343 (479)
Q Consensus 264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 343 (479)
|.+++|+|++.++++|+.|+.|++||+++....... ..+...|.++.|+|++..+
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l----------------------- 241 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TGHESDINAICFFPNGNAF----------------------- 241 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSEE-----------------------
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE--cCCcCCEEEEEEcCCCCEE-----------------------
Confidence 999999999999999999999999999876554322 2456789999999987654
Q ss_pred eEEEEeCCCcEEEEECCCCeeEEEEcc--CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895 344 PVITGSHDCTIRLWDLAAGKSLCTLTN--HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC 420 (479)
Q Consensus 344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~ 420 (479)
++|+.|++|++||++.++.+..+.. +...|++++|+|++.++++++.|. |++||..+++.+..+.+|...|.+++
T Consensus 242 --~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp --EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred --EEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 5667778888888888877776642 335799999999999999998885 99999999999999999999999999
Q ss_pred EcCCC-EEEEEeCCCcEEEEe
Q psy8895 421 VNNEG-VLVSGADNGTMCFWD 440 (479)
Q Consensus 421 ~~~~~-~l~sg~~dg~i~lWd 440 (479)
|+|++ +|+||+.||+|+|||
T Consensus 320 ~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 320 VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEcCCccEEecC
Confidence 99999 899999999999997
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-42 Score=322.53 Aligned_cols=224 Identities=29% Similarity=0.421 Sum_probs=194.4
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++......
T Consensus 54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence 55667888999999999999999999999999999999999999999999999999999999999999999997653322
Q ss_pred CCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC--------------------CCCCeEEEEeCCCcEEE
Q psy8895 298 QPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSAT--------------------EESHPVITGSHDCTIRL 356 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~l~sgs~d~~v~i 356 (479)
.. ...+...|.+++|+| ++..+++++.|++|++|+...... .+...+++|+.|++|++
T Consensus 134 ~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 134 QT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (304)
T ss_dssp EE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred hh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 11 134667899999998 578999999999999999754321 13457999999999999
Q ss_pred EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC---EEEEEeC
Q psy8895 357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG---VLVSGAD 432 (479)
Q Consensus 357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~---~l~sg~~ 432 (479)
||+++++++.++.+|...|.+++|+|++.+|++++.|+ |++||..++++.+.+..|...+++++++|++ ++++|++
T Consensus 213 Wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred EeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 99999999999999999999999999999999998885 9999999999999999999999999998876 4777766
Q ss_pred CCcEEEEecCC
Q psy8895 433 NGTMCFWDWRT 443 (479)
Q Consensus 433 dg~i~lWd~~~ 443 (479)
|| +.+|++..
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 54 66777754
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=321.92 Aligned_cols=288 Identities=23% Similarity=0.324 Sum_probs=241.0
Q ss_pred EeeecCCcccceEEEEEccC----CceEEEecCCCeEEEEeecccce--EeeecccccceEEEEecCCCCccccceEEec
Q psy8895 25 VIRHYHGHLSSVNTISLHPT----IDVLITAGRDSTARVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVLLE 98 (479)
Q Consensus 25 ~~~~~~gH~~~V~~l~~sp~----g~~laSgs~D~~vriWd~~t~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 98 (479)
+.+...+|.++|++++|+|+ +++|||||.|++|||||+.+++. ..++.+|...|.++.+.++...
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~--------- 94 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPI--------- 94 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSE---------
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCE---------
Confidence 45677899999999999985 57999999999999999987754 4568899999999988765321
Q ss_pred cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895 99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178 (479)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (479)
+.+...++++++|++...
T Consensus 95 ------------------l~s~s~D~~i~lWd~~~~-------------------------------------------- 112 (321)
T 3ow8_A 95 ------------------AASSSLDAHIRLWDLENG-------------------------------------------- 112 (321)
T ss_dssp ------------------EEEEETTSEEEEEETTTT--------------------------------------------
T ss_pred ------------------EEEEeCCCcEEEEECCCC--------------------------------------------
Confidence 112234567888875311
Q ss_pred cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895 179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258 (479)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~ 258 (479)
+....+.+|...+.+++|+|++++|++|+.|+.|++||+.+++....+.
T Consensus 113 -------------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 113 -------------------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp -------------------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred -------------------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 0112344566778889999999999999999999999999999999999
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA 338 (479)
Q Consensus 259 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 338 (479)
.|...|.+++|+|++++|++++.|+.|++||+++++..... ..+...|.+++|+|++..+
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~spd~~~l------------------ 221 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--EGHAMPIRSLTFSPDSQLL------------------ 221 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCCCEEEECTTSCEE------------------
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cccCCceeEEEEcCCCCEE------------------
Confidence 99999999999999999999999999999999877654332 2355678899999987654
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEE
Q psy8895 339 TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIIN 417 (479)
Q Consensus 339 ~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~ 417 (479)
++|+.|++|++||++.++.+.++.+|...|.+++|+|++.+|++++.|. |++||+.+++++..+.+|...|.
T Consensus 222 -------~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 222 -------VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp -------EEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred -------EEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 5667788888899988888999999999999999999999999998875 99999999999999999999999
Q ss_pred EEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895 418 SICVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 418 ~l~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
+++|+|++ +|++++.||+|++||.
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999998 8999999999999996
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-41 Score=344.25 Aligned_cols=329 Identities=32% Similarity=0.565 Sum_probs=273.9
Q ss_pred CcccccCceEEEeecccceeEeeE-------------------------EeeecCCcccceEEEEEccCCceEEEecCCC
Q psy8895 1 VWDLATGKLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDS 55 (479)
Q Consensus 1 ~Wd~~~~~~~~~~~g~~~~v~~~~-------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~ 55 (479)
+||. +++++.++.+|.+.|+++. .+..+.+|..+|++++|+|+++.|++++.|+
T Consensus 206 ~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~ 284 (577)
T 2ymu_A 206 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284 (577)
T ss_dssp EECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 5784 5778888999998888764 2445689999999999999999999999999
Q ss_pred eEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhh
Q psy8895 56 TARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQ 135 (479)
Q Consensus 56 ~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (479)
+|++||. +++.+..+.+|...+.++.|.++... +. ....++.+++|+...
T Consensus 285 ~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~----------------------t~~~d~~i~~w~~~~-- 334 (577)
T 2ymu_A 285 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-----IA----------------------SASDDKTVKLWNRNG-- 334 (577)
T ss_dssp CEEEEET-TSCEEEEECCCSSCEEEEEECTTSSE-----EE----------------------EEETTSCEEEEETTS--
T ss_pred EEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCE-----EE----------------------EEeCCCeEEEEeCCC--
Confidence 9999996 46678889999999999988765321 10 112345666665321
Q ss_pred hhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEe
Q psy8895 136 EQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVI 215 (479)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (479)
+....+
T Consensus 335 --------------------------------------------------------------------------~~~~~~ 340 (577)
T 2ymu_A 335 --------------------------------------------------------------------------QHLQTL 340 (577)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred --------------------------------------------------------------------------CeeEEE
Confidence 011235
Q ss_pred cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA 295 (479)
Q Consensus 216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 295 (479)
.+|...|.+++|+|+|+++++|+.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.|++||... +.
T Consensus 341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~ 418 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL 418 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CE
T ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE
Confidence 578899999999999999999999999999995 5778888999999999999999999999999999999999643 22
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEEEC
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLWDL 359 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iwd~ 359 (479)
... ...+...+.+++|+|+++.+++++.|+++++|+..... .++...+++++.|++|++||.
T Consensus 419 ~~~--~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 419 LQT--LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEE--EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEE--ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 211 12456789999999999999999999999999965321 234578999999999999995
Q ss_pred CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895 360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMC 437 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~ 437 (479)
+++.+.++.+|...|++++|+|++.+|++++.|. |++||. +++++..+.+|.+.|++++|+||+ +|+|++.|++|+
T Consensus 497 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 497 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred -CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 5788899999999999999999999999998885 999996 688899999999999999999999 899999999999
Q ss_pred EEe
Q psy8895 438 FWD 440 (479)
Q Consensus 438 lWd 440 (479)
+||
T Consensus 575 ~Wd 577 (577)
T 2ymu_A 575 LWN 577 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.3e-41 Score=321.78 Aligned_cols=294 Identities=21% Similarity=0.305 Sum_probs=240.8
Q ss_pred EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI 103 (479)
Q Consensus 24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (479)
...+++.||.++|++++|+|++++|||||.|++|+|||..+++....+..|...+.++.|.++... +
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l-------- 121 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-----I-------- 121 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE-----E--------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE-----E--------
Confidence 356778999999999999999999999999999999999999999999999999999998776432 1
Q ss_pred EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895 104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT 183 (479)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (479)
+ +...++.+++|++..... +
T Consensus 122 --a------------sg~~d~~i~v~~~~~~~~---------------------------------------~------- 141 (354)
T 2pbi_B 122 --A------------CGGLDNKCSVYPLTFDKN---------------------------------------E------- 141 (354)
T ss_dssp --E------------EESTTSEEEEEECCCCTT---------------------------------------C-------
T ss_pred --E------------EeeCCCCEEEEEEecccc---------------------------------------c-------
Confidence 1 112334555554321000 0
Q ss_pred CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895 184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS 263 (479)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~ 263 (479)
. .......+.+|.+.|.+++|+|+++.|++++.|++|++||+.+++.+..+.+|...
T Consensus 142 --~---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 142 --N---------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp --C---------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred --c---------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 0 00011245679999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895 264 VRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE 341 (479)
Q Consensus 264 v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 341 (479)
|.+++++| ++.++++|+.|++|++||+++++..... ..+...|.+++|+|++..+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l--------------------- 255 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNSVRYYPSGDAF--------------------- 255 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEE---------------------
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCeEEEEEeCCCCEE---------------------
Confidence 99999987 4689999999999999999877654332 2456789999999987654
Q ss_pred CCeEEEEeCCCcEEEEECCCCeeEEEEccC--CCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEE
Q psy8895 342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNH--KKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINS 418 (479)
Q Consensus 342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~ 418 (479)
++|+.|++|++||++.++.+..+..+ ...+.+++|+|++.++++++.| .|++||..+++.+..+.+|...|++
T Consensus 256 ----~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 256 ----ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 331 (354)
T ss_dssp ----EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred ----EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence 56677778888888877776666533 3578999999999999999877 5999999999999999999999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEe
Q psy8895 419 ICVNNEG-VLVSGADNGTMCFWD 440 (479)
Q Consensus 419 l~~~~~~-~l~sg~~dg~i~lWd 440 (479)
++|+|++ +|++|+.|++|++|+
T Consensus 332 l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 332 LRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 899999999999996
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-41 Score=325.20 Aligned_cols=292 Identities=16% Similarity=0.202 Sum_probs=231.1
Q ss_pred cCCcccceEEEEEccCCceEEEecC------CCeEEEEeecccceEee----ecccccceEEEEecCCCCccccceEEec
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGR------DSTARVWDVRTKANVYT----LTGHTNTIASVVTQASEPQVGTKTVLLE 98 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~------D~~vriWd~~t~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 98 (479)
..+|...|++++|+|||++|||||. |++|++|+..++....+ ..+|...|.++.|.++.. ++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~------~l-- 109 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG------IL-- 109 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE------EE--
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC------EE--
Confidence 3579999999999999999999998 77899999887764333 346888899999876531 11
Q ss_pred cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895 99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178 (479)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (479)
+ ...+++|++|++...+..
T Consensus 110 -------~-------------~s~dg~v~lWd~~~~~~~----------------------------------------- 128 (357)
T 4g56_B 110 -------V-------------ASDSGAVELWEILEKESL----------------------------------------- 128 (357)
T ss_dssp -------E-------------EETTSCEEEC-------------------------------------------------
T ss_pred -------E-------------EECCCEEEEeecccccee-----------------------------------------
Confidence 1 123467888875421000
Q ss_pred cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895 179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258 (479)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~ 258 (479)
. .......+|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+.
T Consensus 129 ~------------------------------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 129 L------------------------------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp C------------------------------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred E------------------------------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 0 0001245799999999999999999999999999999999999999999
Q ss_pred cCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895 259 GHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS 337 (479)
Q Consensus 259 ~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 337 (479)
+|...|.+++|++++. ++++++.|++|++||+++.+.........+...+.+++|+|++.
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~------------------- 239 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD------------------- 239 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST-------------------
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc-------------------
Confidence 9999999999999875 78899999999999998776554433334556788999988643
Q ss_pred CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcce
Q psy8895 338 ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAI 415 (479)
Q Consensus 338 ~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~ 415 (479)
..+++|+.|+.|++||+++++++.++.+|...|++++|+|++ .+|++++.| .|++||..+++++..+ +|.+.
T Consensus 240 -----~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~ 313 (357)
T 4g56_B 240 -----DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF 313 (357)
T ss_dssp -----TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC
T ss_pred -----ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC
Confidence 235678889999999999999999999999999999999986 678888877 5999999999887654 89999
Q ss_pred EEEEEEcC-CC-EEEEEeCCCcEEEEecCCC
Q psy8895 416 INSICVNN-EG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 416 v~~l~~~~-~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
|++++|+| ++ +|+||+.||+|++||+.+.
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999998 66 8999999999999999764
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=322.56 Aligned_cols=206 Identities=21% Similarity=0.258 Sum_probs=175.3
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~ 292 (479)
.+.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++++..+.+|...|.+++|++++. ++++++.|++|++||+++
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 3568999999999999999999999999999999999999999999999999999999885 688999999999999987
Q ss_pred CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372 (479)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~ 372 (479)
.+.........+...+.++.|+|++. ..+++|+.|++|++||+++++++.++.+|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~p~~~------------------------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 202 PKPASQIGCSAPGYLPTSLAWHPQQS------------------------EVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp SSCEEECC----CCCEEEEEECSSCT------------------------TEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred cceeeeeecceeeccceeeeecCCCC------------------------cceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 76554433333445677888887533 336788889999999999999999999999
Q ss_pred CceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCC
Q psy8895 373 KSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 373 ~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~ 444 (479)
..|++++|+|++ .+|++++.|. |++||..++++. .+.+|.+.|++++|+|++ +|+|||.|++|++|++.++
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999999987 5788888775 999999988765 578999999999999987 5789999999999999874
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-41 Score=330.31 Aligned_cols=301 Identities=23% Similarity=0.372 Sum_probs=241.4
Q ss_pred eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895 23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER 102 (479)
Q Consensus 23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (479)
+.+.+++.||.++|++++|+|++++|||||.|++|+|||+.+++.+.++.+|...|.++.|.++...
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~------------- 122 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS------------- 122 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE-------------
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE-------------
Confidence 4567789999999999999999999999999999999999999999999999999999988765432
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
+ .+...++.+++|++..... ..
T Consensus 123 --l------------as~~~d~~v~iw~~~~~~~-------------------------------------~~------- 144 (380)
T 3iz6_a 123 --V------------ACGGLDSACSIFNLSSQAD-------------------------------------RD------- 144 (380)
T ss_dssp --E------------EECCSSSCCEEEECCCCSS-------------------------------------CC-------
T ss_pred --E------------EEeeCCCcEEEEECCCCcc-------------------------------------cc-------
Confidence 1 1123446677776531100 00
Q ss_pred CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEE----
Q psy8895 183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSL---- 257 (479)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~---- 257 (479)
.. ....+.+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.+++.+..+
T Consensus 145 --~~----------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 145 --GN----------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp --CS----------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred --CC----------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 00 0011245689999999999986 457999999999999999999988877
Q ss_pred -ecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895 258 -TGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED 335 (479)
Q Consensus 258 -~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~ 335 (479)
.+|...|.++++++ ++.++++|+.|++|++||++........ ...+...|.++.|+|++..+
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l--------------- 264 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDGQRF--------------- 264 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTSSEE---------------
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCCCeE---------------
Confidence 67999999999977 7889999999999999999743222111 13466789999999987654
Q ss_pred CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC-------CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEe
Q psy8895 336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK-------KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQ 407 (479)
Q Consensus 336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~ 407 (479)
++|+.|++|++||+++++.+..+..+. ..|++++|+|++.++++++.|. |++||..+++...
T Consensus 265 ----------~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 265 ----------GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp ----------EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred ----------EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 566777788888888888877765442 2489999999999999998775 9999999998877
Q ss_pred ee----cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 408 NL----PGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 408 ~~----~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
.+ .+|.+.|++++|+|++ +|+||+.|++|++|++...
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 76 6899999999999999 9999999999999998865
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-40 Score=311.76 Aligned_cols=291 Identities=26% Similarity=0.414 Sum_probs=239.3
Q ss_pred eEEeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecc-----cceEeeecccccceEEEEecCCCCccccceEE
Q psy8895 23 LTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRT-----KANVYTLTGHTNTIASVVTQASEPQVGTKTVL 96 (479)
Q Consensus 23 ~~~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 96 (479)
+.+..++.||.++|++|+|+|++ ++|+|||.|++|++||+.+ +..+.++.+|...|.++.|.++...
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~------- 79 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY------- 79 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-------
Confidence 55677889999999999999975 8999999999999999874 3457789999999999998765431
Q ss_pred eccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccc
Q psy8895 97 LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE 176 (479)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (479)
+.+...++++++|++...
T Consensus 80 --------------------l~s~s~D~~v~~wd~~~~------------------------------------------ 97 (319)
T 3frx_A 80 --------------------ALSASWDKTLRLWDVATG------------------------------------------ 97 (319)
T ss_dssp --------------------EEEEETTSEEEEEETTTT------------------------------------------
T ss_pred --------------------EEEEeCCCEEEEEECCCC------------------------------------------
Confidence 112234577888875310
Q ss_pred cccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q psy8895 177 NQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS 256 (479)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~ 256 (479)
+....+.+|.+.|.+++|+|++++|++|+.|++|++||++ ++++..
T Consensus 98 ---------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 98 ---------------------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp ---------------------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred ---------------------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 1123466899999999999999999999999999999996 567778
Q ss_pred EecCCcCEEEEEEcCC------CCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895 257 LTGHVGSVRGLTVSPR------HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330 (479)
Q Consensus 257 ~~~h~~~v~~v~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 330 (479)
+.+|...|.++.++|. +..+++++.|+.|++||++..+..... ..+...|.+++|+|++.++
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l---------- 211 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLI---------- 211 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE--CCCCSCEEEEEECTTSSEE----------
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee--cCCCCcEEEEEEcCCCCEE----------
Confidence 8999999999999985 448999999999999999865543222 3466789999999987664
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP 410 (479)
Q Consensus 331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~ 410 (479)
++|+.|++|++||+.+++.+.++..+ ..|.+++|+|++.++++++.+.+++|+...+..+..+.
T Consensus 212 ---------------~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 212 ---------------ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp ---------------EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC
T ss_pred ---------------EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC
Confidence 56777888889999999888888754 68999999999999999999999999998877766654
Q ss_pred C--------CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 411 G--------HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 411 ~--------h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
. |...+.+++|+|++ +|++|+.||+|++||+.|+
T Consensus 276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 3 45679999999999 9999999999999998875
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=318.80 Aligned_cols=318 Identities=23% Similarity=0.344 Sum_probs=237.9
Q ss_pred eEEeeecCCccc-ceEEEEEccCCceEEEecCCCeEEEEeecccceEe---eecccccceEEEEecCCCCccccceEEec
Q psy8895 23 LTVIRHYHGHLS-SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVY---TLTGHTNTIASVVTQASEPQVGTKTVLLE 98 (479)
Q Consensus 23 ~~~~~~~~gH~~-~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 98 (479)
+.++.++.+|.+ .|.+++|+|+|++|||||.|++|||||++++.... ...+|...|.++.|+++... +
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-----l--- 76 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-----L--- 76 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE-----E---
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE-----E---
Confidence 456778889988 99999999999999999999999999999876432 23689999999999775431 1
Q ss_pred cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895 99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ 178 (479)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (479)
.+...++++++|+....
T Consensus 77 -------------------~s~s~D~~v~iw~~~~~-------------------------------------------- 93 (345)
T 3fm0_A 77 -------------------ASASFDATTCIWKKNQD-------------------------------------------- 93 (345)
T ss_dssp -------------------EEEETTSCEEEEEECCC--------------------------------------------
T ss_pred -------------------EEEECCCcEEEEEccCC--------------------------------------------
Confidence 11223456677653210
Q ss_pred cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEE
Q psy8895 179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKL 255 (479)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~ 255 (479)
..+....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++. +..
T Consensus 94 -----------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 94 -----------------------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp ------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred -----------------------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE
Confidence 011223567899999999999999999999999999999998763 456
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895 256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED 335 (479)
Q Consensus 256 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~ 335 (479)
.+.+|...|.+++|+|++.+|++++.|++|++||.+............+...|.+++|+|+++++++++.|++|++|+..
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 78899999999999999999999999999999998765422111123466789999999999999999999999999853
Q ss_pred CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------
Q psy8895 336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK--------- 404 (479)
Q Consensus 336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~--------- 404 (479)
....... +.....+. ..+++.++.+ |...|.+++|+|++..+++++.| .+++|+...+.
T Consensus 225 ~~~~~~~--~~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 225 LPGNEQG--VACSGSDP--------SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp CTTCTTC--CCCC---C--------EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred cCCCCcc--ceeeccCC--------ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 3221111 10011111 1234556655 88999999999999888888877 49999876542
Q ss_pred EEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 405 FIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 405 ~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
..+.+.+|...|++++|+|++ +||||+.||+|++|++.+++.+..+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 123346899999999999975 8999999999999999988765443
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-40 Score=316.42 Aligned_cols=231 Identities=19% Similarity=0.338 Sum_probs=193.1
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
.+.+|...|.+++|+|++.++++|+.|++|++||+++++....+.+|...|.+++|+|++.++++++.|++|++||+...
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCC----------CEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEE
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSG----------SRLITTEADKTVKLYKEDDSA----------------TEESHPVIT 347 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~s 347 (479)
..........+...+.++.|+|++ ..+++++.|++|++|+..... .++...|++
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEE
Confidence 222111122456779999999986 789999999999999953211 134568999
Q ss_pred EeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEe--eec-----------CCc
Q psy8895 348 GSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQ--NLP-----------GHN 413 (479)
Q Consensus 348 gs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~--~~~-----------~h~ 413 (479)
|+.|++|++||+.. ..+...+ .+...|++++|+|++.++++++++.+++|++.+++... .+. +|.
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred EcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 99999999999954 3444444 34567999999999999998888889999998765433 333 788
Q ss_pred ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895 414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
..|.+++|+|++ +|++|+.||+|++|++++|+
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 899999999998 89999999999999988764
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-39 Score=306.43 Aligned_cols=297 Identities=23% Similarity=0.314 Sum_probs=214.6
Q ss_pred eeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeeccc--ceEeee-cc-cccceEEEEecCCCCccccceEEe
Q psy8895 22 GLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTL-TG-HTNTIASVVTQASEPQVGTKTVLL 97 (479)
Q Consensus 22 ~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~--~~~~~~-~~-h~~~v~~~~~~~~~~~~~~~~~~~ 97 (479)
.+.+++++.+|.++|.+++|+|+ +|||||.|++|+|||+.++ +.+..+ .+ |...|.++.|.++...
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-------- 72 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-------- 72 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSE--------
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCE--------
Confidence 34566778899999999999997 9999999999999999875 345556 44 9999999999775421
Q ss_pred ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895 98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN 177 (479)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
+.+...++++++|+...... .
T Consensus 73 -------------------las~s~D~~v~iw~~~~~~~----------------------------------------~ 93 (330)
T 2hes_X 73 -------------------LAAGSFDSTVSIWAKEESAD----------------------------------------R 93 (330)
T ss_dssp -------------------EEEEETTSCEEEEEC----------------------------------------------
T ss_pred -------------------EEEEeCCCcEEEEEcccCcC----------------------------------------c
Confidence 11223456778886421000 0
Q ss_pred ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ce
Q psy8895 178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----KL 253 (479)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~~ 253 (479)
....+....+.+|.+.|.+++|+|+|++|++|+.|++|++||+... ++
T Consensus 94 ----------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~ 145 (330)
T 2hes_X 94 ----------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145 (330)
T ss_dssp -----------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred ----------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence 0011233467899999999999999999999999999999999432 45
Q ss_pred EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC--cccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeE
Q psy8895 254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK--APVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTV 329 (479)
Q Consensus 254 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i 329 (479)
+..+.+|...|.+++|+|++.+|++++.|++|++||..... +... ...+...|.++.|+|+ +..+++
T Consensus 146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s------- 216 (330)
T 2hes_X 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV--LNGHEGTVWSSDFDKTEGVFRLCS------- 216 (330)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCSSSSCEEEE-------
T ss_pred EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE--ccCCCCcEEEEEecCCCCeeEEEE-------
Confidence 67889999999999999999999999999999999986542 2111 1346678999999987 445554
Q ss_pred EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC--------eeEEEEcc-CCCceEEEEEeCCCcEEEEEcCC-cEEEEe
Q psy8895 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAG--------KSLCTLTN-HKKSVRSVALHPTLYMFASASPD-NIKQWK 399 (479)
Q Consensus 330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~--------~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~ 399 (479)
|+.|++|++||++.+ .....+.+ |...|.+++|++++. +++++.| .|++|+
T Consensus 217 ------------------~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 217 ------------------GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYE 277 (330)
T ss_dssp ------------------EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred ------------------EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE-EEEEeCCCEEEEEE
Confidence 445555555554332 33445554 899999999998774 5555555 699999
Q ss_pred CCCCe--EEe-eecCCcc-eEEEEEEcC--CC-EEEEEeCCCcEEEEecCC
Q psy8895 400 CPEGK--FIQ-NLPGHNA-IINSICVNN--EG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 400 ~~~~~--~~~-~~~~h~~-~v~~l~~~~--~~-~l~sg~~dg~i~lWd~~~ 443 (479)
..+++ ... .+.+|.. .|++++++| ++ +|++|+.||+|+|||+++
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 88774 333 3467887 899999998 56 899999999999999875
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-38 Score=297.54 Aligned_cols=292 Identities=23% Similarity=0.409 Sum_probs=239.3
Q ss_pred eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895 23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER 102 (479)
Q Consensus 23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (479)
..+..++.||.++|++++|+|++++||||+.|++|+|||+.+++....+.+|...+.++.|.++... ++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~------ 81 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LV------ 81 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-----EE------
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCE-----EE------
Confidence 3455678899999999999999999999999999999999999999999999999999998765421 11
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
....++.+++|+....
T Consensus 82 ----------------s~~~d~~i~vwd~~~~------------------------------------------------ 97 (312)
T 4ery_A 82 ----------------SASDDKTLKIWDVSSG------------------------------------------------ 97 (312)
T ss_dssp ----------------EEETTSEEEEEETTTC------------------------------------------------
T ss_pred ----------------EECCCCEEEEEECCCC------------------------------------------------
Confidence 1123456777764210
Q ss_pred CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895 183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262 (479)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~ 262 (479)
+....+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+..|..
T Consensus 98 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 98 ---------------------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp ---------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred ---------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence 11234567999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES 342 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 342 (479)
+|.+++|+|++.++++++.|+.|++||+++.+..... .......+..+.|+|++.++
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l---------------------- 207 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYI---------------------- 207 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSCCCEEEEEECTTSSEE----------------------
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE-eccCCCceEEEEECCCCCEE----------------------
Confidence 9999999999999999999999999999876543322 12234567888888876654
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE--EEE-eCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS--VAL-HPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS 418 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~--i~~-~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~ 418 (479)
++++.|+.|++||+++++.+..+.+|...+.. ..+ .+++.++++++.|+ |++||..+++.+..+.+|...|.+
T Consensus 208 ---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 208 ---LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp ---EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ---EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 56677788888999989988888888654322 233 46788889888775 999999999999999999999999
Q ss_pred EEEcCCC-EEEEEe--CCCcEEEEecC
Q psy8895 419 ICVNNEG-VLVSGA--DNGTMCFWDWR 442 (479)
Q Consensus 419 l~~~~~~-~l~sg~--~dg~i~lWd~~ 442 (479)
++++|++ .+++++ .|++|++|+.+
T Consensus 285 ~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 285 TACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EeecCcCCceEEEEccCCccEEEecCC
Confidence 9999998 888886 69999999864
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-38 Score=307.54 Aligned_cols=223 Identities=27% Similarity=0.502 Sum_probs=194.2
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
+...|.+++|+|+|++|++|+.|++|++||+.+++....+.+|...|.+++|+|++.++++++.|++|++||+++++...
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999998766543
Q ss_pred CCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC------------------------CCCCCeEEEEeCCC
Q psy8895 298 QPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA------------------------TEESHPVITGSHDC 352 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~------------------------~~~~~~l~sgs~d~ 352 (479)
.. .....+.++.++| ++..+++++.|+.|++|+..... .++...+++|+.|+
T Consensus 202 ~~---~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 202 TL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EE---ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EE---EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 22 2345789999998 88999999999999999975421 12356799999999
Q ss_pred cEEEEECCCC------------eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895 353 TIRLWDLAAG------------KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI 419 (479)
Q Consensus 353 ~v~iwd~~~~------------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l 419 (479)
+|++||++.. .+..++.+|...|.+++|+|++.++++++.|. |++||..+++.+..+.+|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 9999999753 34567788999999999999999999998885 9999999999999999999999999
Q ss_pred EEcC------CC-EEEEEeCCCcEEEEecCC
Q psy8895 420 CVNN------EG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 420 ~~~~------~~-~l~sg~~dg~i~lWd~~~ 443 (479)
++++ ++ +|+||+.||+|++|++++
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9976 45 899999999999999764
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-37 Score=296.51 Aligned_cols=230 Identities=22% Similarity=0.396 Sum_probs=196.4
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
.+.+|...|.+++|+|+|++|++++.|+.|++|+............+...+..+.+++++.++++++.|+.+++||+...
T Consensus 81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 35679999999999999999999999999999999999888888889999999999999999999999999999998754
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcE
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSG--SRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTI 354 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v 354 (479)
...... ...+...+..+.|.+++ ..+++++.|+.|++|+..... .++...+++|+.|++|
T Consensus 161 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 161 CKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp EEEEEC-SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred ceEEEE-eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 432221 23456778889988754 578899999999999976532 1345689999999999
Q ss_pred EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee---------cCCcceEEEEEEcCCC
Q psy8895 355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL---------PGHNAIINSICVNNEG 425 (479)
Q Consensus 355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~---------~~h~~~v~~l~~~~~~ 425 (479)
++||+++.+++..+..+ ..|.+++|+|++.+++++.++.|++||..++..+..+ .+|...|++++|+|++
T Consensus 240 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 99999999999888754 6899999999999998888888999999988776554 3688899999999998
Q ss_pred -EEEEEeCCCcEEEEecCCCe
Q psy8895 426 -VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 426 -~l~sg~~dg~i~lWd~~~~~ 445 (479)
+|++|+.||+|+|||+++|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999985
No 20
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-38 Score=355.84 Aligned_cols=403 Identities=20% Similarity=0.371 Sum_probs=301.4
Q ss_pred CcccccCceEEEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccC--CceEEEec
Q psy8895 1 VWDLATGKLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPT--IDVLITAG 52 (479)
Q Consensus 1 ~Wd~~~~~~~~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~--g~~laSgs 52 (479)
|||+.+++.+.++.+|.+.|.++. .+..+.+|...|.+++|+|+ +.++++|+
T Consensus 641 vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~ 720 (1249)
T 3sfz_A 641 VFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720 (1249)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred EEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEe
Confidence 699999999999999999999874 25567899999999999995 56899999
Q ss_pred CCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhh
Q psy8895 53 RDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ 132 (479)
Q Consensus 53 ~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (479)
.|++|++||+.+++.+.++.+|.+.+.++.|.++... ++ +...++.+++|++.
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~-----l~----------------------s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-----LA----------------------SCSADGTLRLWDVR 773 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE-----EE----------------------EEESSSEEEEEEGG
T ss_pred CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE-----EE----------------------EEECCCeEEEEeCC
Confidence 9999999999999999999999999999999775432 11 12344677888765
Q ss_pred hhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeE
Q psy8895 133 IIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLY 212 (479)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (479)
..+........... ... ..........+.+..+.+. ...++........++.. .......
T Consensus 774 ~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v~~~~~s~d-g~~l~~~~~~~v~~~d~-------------~~~~~~~ 833 (1249)
T 3sfz_A 774 SANERKSINVKRFF---LSS---EDPPEDVEVIVKCCSWSAD-GDKIIVAAKNKVLLFDI-------------HTSGLLA 833 (1249)
T ss_dssp GTEEEEEEECCCCC--------------CCCCCBCCCCBCTT-SSEEEEEETTEEEEEET-------------TTCCEEE
T ss_pred CCcccceecccccc---ccc---CCccccccceEEEEEECCC-CCEEEEEcCCcEEEEEe-------------cCCCcee
Confidence 32111000000000 000 0000000001111112211 11222211111111100 0011122
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
....+|...|.+++|+|+++++++++.|+.|++||+.++.....+.+|...|.+++|+|++.++++++.|+.|++||+..
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCc-----------------------------------------------------------c-----------------
Q psy8895 293 NKA-----------------------------------------------------------P----------------- 296 (479)
Q Consensus 293 ~~~-----------------------------------------------------------~----------------- 296 (479)
... .
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 000 0
Q ss_pred -cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECC
Q psy8895 297 -VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLA 360 (479)
Q Consensus 297 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~ 360 (479)
.......+...|.++.|+|+++.+++++.|+.+++|+...... .....+++++.|++|++||+.
T Consensus 994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 0000113456788899999999999999999999999765421 123468899999999999999
Q ss_pred CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEE
Q psy8895 361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCF 438 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~l 438 (479)
+++.+..+.+|...|++++|+|++..+++++.|+ +++||..+++.+..+.+|.+.|++++|+|++ +|++|+.||+|++
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999999999999999999999999999998875 9999999999999999999999999999999 9999999999999
Q ss_pred EecCCCeEEEEE
Q psy8895 439 WDWRTGYNFQRL 450 (479)
Q Consensus 439 Wd~~~~~~~~~~ 450 (479)
||+.+++.+..+
T Consensus 1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp EESSSSCCCCCC
T ss_pred EECCCCceEEEe
Confidence 999999776543
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.3e-37 Score=287.50 Aligned_cols=249 Identities=20% Similarity=0.337 Sum_probs=217.1
Q ss_pred eEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895 211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290 (479)
Q Consensus 211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~ 290 (479)
..+++.+|.+.|.+++|+|++++|++|+.|++|++||+.++..+..+..|..+|.+++|+|+++++++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CC-CCCeEEEEeCC
Q psy8895 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TE-ESHPVITGSHD 351 (479)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~-~~~~l~sgs~d 351 (479)
++++..... ..+...|.+++|+|++..+++++.|++|++|+..... .+ +...+++|+.|
T Consensus 85 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 85 NTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCcEEEEE--eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 877654332 3466789999999999999999999999999975431 01 34579999999
Q ss_pred CcEEEEECCCCeeEEEEc-cCCCceEEEEEeC--CCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-E
Q psy8895 352 CTIRLWDLAAGKSLCTLT-NHKKSVRSVALHP--TLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-V 426 (479)
Q Consensus 352 ~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~--~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 426 (479)
++|++||++...+...+. +|...+..++++| ++.++++++.|. |++||..+++++..+.+|...|.+++|+|++ +
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 999999998877766654 5668899999987 677888888875 9999999999999999999999999999998 8
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEEEE-----eEecCCCCC
Q psy8895 427 LVSGADNGTMCFWDWRTGYNFQRLQV-----RCVSGFPKP 461 (479)
Q Consensus 427 l~sg~~dg~i~lWd~~~~~~~~~~~~-----~~~~~~~~~ 461 (479)
|++|+.||+|++||.++++.++.++. .|+..+|+.
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999999999999988877643 345555544
No 22
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-36 Score=311.17 Aligned_cols=365 Identities=16% Similarity=0.217 Sum_probs=255.2
Q ss_pred EeeecCCcccc-eEEEEEcc--CCceEEEecCCCeEEEEeeccc--------ceEeeecccccceEEEEecCCCCccccc
Q psy8895 25 VIRHYHGHLSS-VNTISLHP--TIDVLITAGRDSTARVWDVRTK--------ANVYTLTGHTNTIASVVTQASEPQVGTK 93 (479)
Q Consensus 25 ~~~~~~gH~~~-V~~l~~sp--~g~~laSgs~D~~vriWd~~t~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 93 (479)
.+..+.+|.+. |++++|+| ++++||+|+.|++|+|||+.++ +.+.++.+|...+.++.|.++...
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---- 130 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR---- 130 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE----
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE----
Confidence 34567889999 99999999 9999999999999999999865 667788899999999999876432
Q ss_pred eEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccc
Q psy8895 94 TVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVP 173 (479)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (479)
++ ..+.. ....+.+..|+... ....+. .+...+..+. +.+
T Consensus 131 -l~---------~~~~~---------~~~~~~v~~~d~~~----~~~~~~-~~~~~v~~~~----------------~~~ 170 (615)
T 1pgu_A 131 -LC---------VVGEG---------RDNFGVFISWDSGN----SLGEVS-GHSQRINACH----------------LKQ 170 (615)
T ss_dssp -EE---------EEECC---------SSCSEEEEETTTCC----EEEECC-SCSSCEEEEE----------------ECS
T ss_pred -EE---------EeccC---------CCCccEEEEEECCC----cceeee-cCCccEEEEE----------------ECC
Confidence 11 11100 00113555665211 000000 0111111111 111
Q ss_pred ccccccccCCCCchhHHHHHhHhcCCCCCCCCC-CcceeEEEecCCCc---cEEEEEEcCC-CcEEEEEeCCCeEEEEEC
Q psy8895 174 STENQLVPTTASNTQIIQQAKAKALPMPKPQWH-APWKLYRVISGHLG---WVRCVAVEPG-NEWFATGSADKIIKVWDL 248 (479)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~---~v~~~~~~~~-g~~l~sgs~d~~i~iWd~ 248 (479)
.....++....+....+ |. ...+....+.+|.+ .|.+++|+|+ +++|++++.|+.|++||+
T Consensus 171 ~~~~~l~~~~~d~~v~v--------------wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVF--------------YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp SSSCEEEEEETTTEEEE--------------EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred CCCcEEEEEeCCCcEEE--------------EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 11112222111111000 11 12355667889999 9999999999 999999999999999999
Q ss_pred CCCceEEEE-e---cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-----------------------
Q psy8895 249 ATGKLKLSL-T---GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS----------------------- 301 (479)
Q Consensus 249 ~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------------------- 301 (479)
.+++.+..+ . +|...|.+++|+ ++.++++++.|+.|++||+++.+.......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 999999888 6 899999999999 999999999999999999986543211100
Q ss_pred -----------------------------------------------------CCCCCCeEEEEEeCCCCEEEEEeCCCe
Q psy8895 302 -----------------------------------------------------MDSESGIFSMTFDNSGSRLITTEADKT 328 (479)
Q Consensus 302 -----------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~ 328 (479)
..+...+.++.| +++..+++++.|+.
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence 001122333333 22444455555555
Q ss_pred EEEEeCCCCCC------------------------------C------------------CCCeEEEEeC-CCcEEEEEC
Q psy8895 329 VKLYKEDDSAT------------------------------E------------------ESHPVITGSH-DCTIRLWDL 359 (479)
Q Consensus 329 i~~~~~~~~~~------------------------------~------------------~~~~l~sgs~-d~~v~iwd~ 359 (479)
+++|+...... . ....+++++. |+.|++||+
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 55554321100 0 0456778888 999999999
Q ss_pred CCCeeE-EEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC-CcceEEEEEEcC----------CC-
Q psy8895 360 AAGKSL-CTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG-HNAIINSICVNN----------EG- 425 (479)
Q Consensus 360 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~----------~~- 425 (479)
..++.. ..+..|...|++++|+|++.+|++++.| .+++||..+++.+..+.+ |...|++++|+| ++
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 876655 5667899999999999999999999877 499999999999999988 999999999999 88
Q ss_pred EEEEEeCCCcEEEEecCCC-eEEEE
Q psy8895 426 VLVSGADNGTMCFWDWRTG-YNFQR 449 (479)
Q Consensus 426 ~l~sg~~dg~i~lWd~~~~-~~~~~ 449 (479)
+|++|+.||+|++||++++ ..++.
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~ 579 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKA 579 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEE
T ss_pred EEEEEcCCCcEEEEECCCCceechh
Confidence 9999999999999999987 45443
No 23
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-37 Score=327.87 Aligned_cols=385 Identities=11% Similarity=0.086 Sum_probs=254.5
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT 109 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (479)
.||.+.|++++|+|++++||+|+.||+|+|||..+++.+..+. |...|.++.|.+ +. .++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~-----~L~------------- 73 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI-----YLV------------- 73 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT-----EEE-------------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC-----EEE-------------
Confidence 4899999999999999999999999999999998887666554 788899999876 21 111
Q ss_pred cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC-chh
Q psy8895 110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS-NTQ 188 (479)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 188 (479)
+...++++++|++...+ ....+. ....+.. ..+.+.. +.++....+ ...
T Consensus 74 ---------S~s~D~~v~lWd~~~~~--~~~~~~--~~~~V~~----------------v~~sp~g-~~l~sgs~dg~V~ 123 (902)
T 2oaj_A 74 ---------VINAKDTVYVLSLYSQK--VLTTVF--VPGKITS----------------IDTDASL-DWMLIGLQNGSMI 123 (902)
T ss_dssp ---------EEETTCEEEEEETTTCS--EEEEEE--CSSCEEE----------------EECCTTC-SEEEEEETTSCEE
T ss_pred ---------EEECcCeEEEEECCCCc--EEEEEc--CCCCEEE----------------EEECCCC-CEEEEEcCCCcEE
Confidence 22345778888865321 110110 0001111 1111111 112111111 111
Q ss_pred HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecC-------
Q psy8895 189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGH------- 260 (479)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h------- 260 (479)
++.....+......+. .++....+.+|.+.|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..|
T Consensus 124 lwd~~~~~~~~~~i~~---~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~ 199 (902)
T 2oaj_A 124 VYDIDRDQLSSFKLDN---LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG 199 (902)
T ss_dssp EEETTTTEEEEEEECC---HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred EEECCCCccccceecc---ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC
Confidence 1100000000000000 00000124679999999999996 5789999999999 9999999988888766
Q ss_pred -----------CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC--CC----CC----------CCCCCeEEEEE
Q psy8895 261 -----------VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PG----SM----------DSESGIFSMTF 313 (479)
Q Consensus 261 -----------~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~----~~----------~~~~~i~~~~~ 313 (479)
...|.+++|+|++.+|++++.|++|++||+++++.... .. .. .+...|.+++|
T Consensus 200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred cccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 46799999999999999999999999999987654321 00 00 11234666666
Q ss_pred eC----CC-C----------------------------------------------------------------------
Q psy8895 314 DN----SG-S---------------------------------------------------------------------- 318 (479)
Q Consensus 314 ~~----~~-~---------------------------------------------------------------------- 318 (479)
.+ ++ .
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~ 359 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA 359 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence 32 21 1
Q ss_pred ------EEEEEeCCCeEEEEeCCCCC------------------------------------------------------
Q psy8895 319 ------RLITTEADKTVKLYKEDDSA------------------------------------------------------ 338 (479)
Q Consensus 319 ------~l~~~~~d~~i~~~~~~~~~------------------------------------------------------ 338 (479)
.+++++.|+.+++|+.....
T Consensus 360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 23333445667777642210
Q ss_pred ----CCCCCeEEEEeCCCcEEEEECCCCeeE----EE--Ec-----cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC
Q psy8895 339 ----TEESHPVITGSHDCTIRLWDLAAGKSL----CT--LT-----NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE 402 (479)
Q Consensus 339 ----~~~~~~l~sgs~d~~v~iwd~~~~~~~----~~--~~-----~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~ 402 (479)
.++...+++|+.|++|++||+.++... .. +. +|...|++++|+|++++||+++.|+ |++|++.+
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 012346899999999999999876421 11 11 7889999999999999999999885 99999876
Q ss_pred Ce---------------------------------------------EEeeecCCcceEEEEEEcCCCEEEEEeCCCcEE
Q psy8895 403 GK---------------------------------------------FIQNLPGHNAIINSICVNNEGVLVSGADNGTMC 437 (479)
Q Consensus 403 ~~---------------------------------------------~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~ 437 (479)
++ ++..+.+|.+.|++++|+|||+||+|+.|++|+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~ 599 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLM 599 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEE
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEE
Confidence 52 367788999999999999999999999999999
Q ss_pred EEecCCCeEEEEEEEeEecCCC-CCceEEeeehhh
Q psy8895 438 FWDWRTGYNFQRLQVRCVSGFP-KPSVFFFFLAFS 471 (479)
Q Consensus 438 lWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 471 (479)
|||++++..+.+.+ | +.+. -....+.+++|+
T Consensus 600 lwd~~~~~~~~~~~--~-~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 600 LIDRRGPAIIYMEN--I-REISGAQSACVTCIEFV 631 (902)
T ss_dssp EEETTTTEEEEEEE--G-GGTCSSCCCCEEEEEEE
T ss_pred EEECCCCeEEEEee--h-hHhccccccceEEEEEE
Confidence 99999887654322 2 4443 344456667776
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.5e-36 Score=315.03 Aligned_cols=228 Identities=24% Similarity=0.441 Sum_probs=195.7
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
.+.+|...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++.++++++.|++|++||+...
T Consensus 425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred Ccc-cCCCCCCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCc
Q psy8895 294 KAP-VQPGSMDSESGIFSMTFDNSG--SRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCT 353 (479)
Q Consensus 294 ~~~-~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~ 353 (479)
... .......+...+.++.|+|++ ..+++++.|++|++|+..... .++...+++|+.|++
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 221 111223456779999999986 589999999999999986542 134567999999999
Q ss_pred EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCc-------------------c
Q psy8895 354 IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHN-------------------A 414 (479)
Q Consensus 354 v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~-------------------~ 414 (479)
|++||+++++.+..+.. ...|.+++|+|++.++++++++.|++||+.+++.+..+..+. .
T Consensus 585 i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 585 VLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp CEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred EEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence 99999999998888754 567999999999999999998899999999998887665331 1
Q ss_pred eEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895 415 IINSICVNNEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~ 442 (479)
.+++++|+|++ +|++|+.||+|++||+.
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 37889999999 99999999999999975
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.8e-36 Score=283.26 Aligned_cols=216 Identities=22% Similarity=0.277 Sum_probs=169.8
Q ss_pred ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895 215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW 288 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w 288 (479)
+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w 128 (297)
T 2pm7_B 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence 457889999999976 38999999999999999998874 55678889999999999997 8899999999999999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----e
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----S 364 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~ 364 (479)
|++............+...+.++.|+|+....... .........+++|+.|++|++||+++++ .
T Consensus 129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EBCSSSCBCCEEEECCSSCEEEEEECCCC------------------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EecCCCceeeeeeecccCccceEeecCCccccccc------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 99765321111112456679999999874321000 0011224578999999999999998765 5
Q ss_pred EEEEccCCCceEEEEEeCCC---cEEEEEcCCc-EEEEeCCCCe---EEeee--cCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 365 LCTLTNHKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGK---FIQNL--PGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~~~---~~l~s~s~d~-i~~w~~~~~~---~~~~~--~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
..++.+|...|++++|+|++ .+|++++.|+ |++||..+.. ....+ .+|...|.+++|+|++ +|++++.|+
T Consensus 197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 67888999999999999984 8899998875 9999987642 12233 5788999999999999 899999999
Q ss_pred cEEEEecC
Q psy8895 435 TMCFWDWR 442 (479)
Q Consensus 435 ~i~lWd~~ 442 (479)
+|+||+..
T Consensus 277 ~v~lw~~~ 284 (297)
T 2pm7_B 277 KVTLWKEN 284 (297)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999976
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-36 Score=295.27 Aligned_cols=237 Identities=26% Similarity=0.474 Sum_probs=214.6
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+|++.+|++|+.|++|++||++.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEE
Q psy8895 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIR 355 (479)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~ 355 (479)
.+..... ..+...|.++.|+|++..+++++.|++|++|+...... +++..+++|+.|++|+
T Consensus 182 ~~~~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SCEEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 6554332 34667899999999999999999999999999865421 3456799999999999
Q ss_pred EEECCCCeeEEEEccCCCceEEEEEeCC--------------------CcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc
Q psy8895 356 LWDLAAGKSLCTLTNHKKSVRSVALHPT--------------------LYMFASASPDN-IKQWKCPEGKFIQNLPGHNA 414 (479)
Q Consensus 356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~--------------------~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~ 414 (479)
+||+.+++....+.+|...|.+++|+|+ +.++++++.|+ |++||+.+++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 56788888775 99999999999999999999
Q ss_pred eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 415 IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.|.+++|+|++ +|++|+.||+|++||++++.+++.+.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 99999999998 89999999999999999998776654
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=295.53 Aligned_cols=305 Identities=13% Similarity=0.189 Sum_probs=246.1
Q ss_pred CcccceEEEEEccCCc-eEEEecCCCeEEEEee----cccc------eEeeecc----------cccceEEEEecCCCCc
Q psy8895 31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDV----RTKA------NVYTLTG----------HTNTIASVVTQASEPQ 89 (479)
Q Consensus 31 gH~~~V~~l~~sp~g~-~laSgs~D~~vriWd~----~t~~------~~~~~~~----------h~~~v~~~~~~~~~~~ 89 (479)
.|.++|++++|+|+|+ +||+|+.|++|++||+ .+++ ....+.. |.+.+.++.|.++...
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4669999999999999 9999999999999999 8887 4444443 6778888887664321
Q ss_pred cccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccc
Q psy8895 90 VGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQ 169 (479)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (479)
++ ....++.+++|+..
T Consensus 123 ---------------l~------------~~~~dg~i~i~~~~------------------------------------- 138 (425)
T 1r5m_A 123 ---------------IV------------TGVENGELRLWNKT------------------------------------- 138 (425)
T ss_dssp ---------------EE------------EEETTSCEEEEETT-------------------------------------
T ss_pred ---------------EE------------EEeCCCeEEEEeCC-------------------------------------
Confidence 01 11123445555411
Q ss_pred ccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC
Q psy8895 170 ELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA 249 (479)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~ 249 (479)
.+....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 139 ---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 139 ---------------------------------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp ---------------------------------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred ---------------------------------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 01123456789999999999999999999999999999999
Q ss_pred CCceEEEEecCCcC---------------EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEe
Q psy8895 250 TGKLKLSLTGHVGS---------------VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFD 314 (479)
Q Consensus 250 ~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (479)
+++....+..+... +.+++|++++ .+++++.|+.|++||++..+..... ..+...+.++.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL--IGHHGPISVLEFN 256 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE--CCCSSCEEEEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee--ccCCCceEEEEEC
Confidence 99998888888776 8999999986 5788999999999999876544322 2456789999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 315 NSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 315 ~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
|++..+++++.|+.+++|+...... ++. .+++++.|+.|++||+++++.+..+..|...|.+
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEE
Confidence 9999999999999999999765321 123 7899999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCC-cEEEEeCCCCe--------------------EEeeecCCcc--eEEEEEEcCCC-EEEEEeCC
Q psy8895 378 VALHPTLYMFASASPD-NIKQWKCPEGK--------------------FIQNLPGHNA--IINSICVNNEG-VLVSGADN 433 (479)
Q Consensus 378 i~~~~~~~~l~s~s~d-~i~~w~~~~~~--------------------~~~~~~~h~~--~v~~l~~~~~~-~l~sg~~d 433 (479)
++|+|++.++++++.+ .|++|++.+++ .+..+.+|.. .|.+++|+|++ +|++++.|
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence 9999999999998877 59999998888 8889999976 99999999998 89999999
Q ss_pred CcEEEEecC
Q psy8895 434 GTMCFWDWR 442 (479)
Q Consensus 434 g~i~lWd~~ 442 (479)
|.|++||++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999985
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-36 Score=334.01 Aligned_cols=338 Identities=19% Similarity=0.321 Sum_probs=269.0
Q ss_pred EEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecc
Q psy8895 11 LSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT 64 (479)
Q Consensus 11 ~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t 64 (479)
..+.+|.+.|.++. .+..+.+|.+.|.+++|+|+|++||||+.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 45778888887764 2556789999999999999999999999999999999999
Q ss_pred cceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhh
Q psy8895 65 KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQE 144 (479)
Q Consensus 65 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 144 (479)
++.+.++.+|...+.++.|.++.... ++ .+...++.+++|+....
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~l------------~sg~~d~~v~vwd~~~~---------- 733 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHL-------------LL------------ATGSNDFFLKLWDLNQK---------- 733 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCC-------------EE------------EEEETTSCEEEEETTSS----------
T ss_pred CceEEEEcCCCCcEEEEEEecCCCce-------------EE------------EEEeCCCeEEEEECCCc----------
Confidence 99999999999999999987643210 11 11234466777765321
Q ss_pred hhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEE
Q psy8895 145 VQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRC 224 (479)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 224 (479)
+....+.+|.+.|.+
T Consensus 734 -----------------------------------------------------------------~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 734 -----------------------------------------------------------------ECRNTMFGHTNSVNH 748 (1249)
T ss_dssp -----------------------------------------------------------------SEEEEECCCSSCEEE
T ss_pred -----------------------------------------------------------------chhheecCCCCCEEE
Confidence 011234456666666
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCc----------------------------------------------------
Q psy8895 225 VAVEPGNEWFATGSADKIIKVWDLATGK---------------------------------------------------- 252 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~---------------------------------------------------- 252 (479)
++|+|+++++++++.|+.|++||+.+++
T Consensus 749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~ 828 (1249)
T 3sfz_A 749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT 828 (1249)
T ss_dssp EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT
T ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecC
Confidence 6666666666666666666666655443
Q ss_pred --eEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895 253 --LKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329 (479)
Q Consensus 253 --~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 329 (479)
....+. +|...|.+++|+|++.++++++.|+.|++||+.+....... ..+...|.++.|+|++..+++++.|+.+
T Consensus 829 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 829 SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--CCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 333332 78889999999999999999999999999999876544332 3466789999999999999999999999
Q ss_pred EEEeCCCC------------------------------------------------------CCCCCCeEEEEeCCCcEE
Q psy8895 330 KLYKEDDS------------------------------------------------------ATEESHPVITGSHDCTIR 355 (479)
Q Consensus 330 ~~~~~~~~------------------------------------------------------~~~~~~~l~sgs~d~~v~ 355 (479)
++|+.... ..+....+++|+.||.|+
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~ 986 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 986 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCE
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEE
Confidence 99985310 012346789999999999
Q ss_pred EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCC
Q psy8895 356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNG 434 (479)
Q Consensus 356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg 434 (479)
+||+.+++.+..+.+|...|++++|+|++.++++++.|. +++|+..+++... +.+|...|.++++++++.+++++.||
T Consensus 987 i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A 987 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCC
Confidence 999999999999999999999999999999999998775 9999999988764 56899999999999999999999999
Q ss_pred cEEEEecCCCeEEEEEE
Q psy8895 435 TMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 435 ~i~lWd~~~~~~~~~~~ 451 (479)
+|++||+.++...+.+.
T Consensus 1066 ~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp EEEEEETTTTCCCEEEE
T ss_pred cEEEEECCCCceeEEEc
Confidence 99999999998776654
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=279.27 Aligned_cols=295 Identities=19% Similarity=0.224 Sum_probs=237.4
Q ss_pred eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895 23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER 102 (479)
Q Consensus 23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (479)
..+.+++.+|.++|++++| |++++||+|+.||+|++||+.+++....+..|...+.++.|.++... ++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~------ 75 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKEL-----LL------ 75 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTE-----EE------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCE-----EE------
Confidence 3556778899999999999 99999999999999999999999999999999999999998775421 11
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
....++.+++|++....
T Consensus 76 ----------------~~~~dg~i~~~~~~~~~----------------------------------------------- 92 (313)
T 3odt_A 76 ----------------FGGKDTMINGVPLFATS----------------------------------------------- 92 (313)
T ss_dssp ----------------EEETTSCEEEEETTCCT-----------------------------------------------
T ss_pred ----------------EecCCCeEEEEEeeecC-----------------------------------------------
Confidence 11233455555432100
Q ss_pred CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895 183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262 (479)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~ 262 (479)
..+....+.+|...|.+++| +++++++++.|+.|++|| .++....+..|..
T Consensus 93 -------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 93 -------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp -------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred -------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 00011245679999999999 578999999999999999 6778888999999
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895 263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE 341 (479)
Q Consensus 263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 341 (479)
.+.+++++| ++.++++++.|+.|++||........ ...+...+.++.|+|++.
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~~~~~~----------------------- 197 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTF---SGIHNDVVRHLAVVDDGH----------------------- 197 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEE---CSSCSSCEEEEEEEETTE-----------------------
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEE---eccCcccEEEEEEcCCCe-----------------------
Confidence 999999988 89999999999999999954322111 122556788888887654
Q ss_pred CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895 342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV 421 (479)
Q Consensus 342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~ 421 (479)
+++++.|+.|++||+++++.+..+..|...|++++|+|++.+++++.++.|++||..+++....+..|...|.++++
T Consensus 198 ---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~ 274 (313)
T 3odt_A 198 ---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC 274 (313)
T ss_dssp ---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE
T ss_pred ---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE
Confidence 45777888899999999999999999999999999999996555555556999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 422 NNEGVLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 422 ~~~~~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
+|++.+++++.||.|++||++++......
T Consensus 275 ~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 275 MSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp CTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred ccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 99998888999999999999988665443
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=280.15 Aligned_cols=238 Identities=24% Similarity=0.392 Sum_probs=209.3
Q ss_pred eEEEecCCCccEEEEEEcCC----CcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895 211 LYRVISGHLGWVRCVAVEPG----NEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT 284 (479)
Q Consensus 211 ~~~~~~~h~~~v~~~~~~~~----g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 284 (479)
+.+.+.+|.+.|.+++|+|+ +++|+||+.|++|++||+.+++. ...+.+|...|.++++++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34567799999999999874 67999999999999999987754 4578999999999999999999999999999
Q ss_pred EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEE
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVIT 347 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~s 347 (479)
|++||+++++..... ..+...+.+++|+|+++.+++++.++.+++|+..... .++...+++
T Consensus 104 i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 999999877654322 1234567789999999999999999999999986542 134568999
Q ss_pred EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-
Q psy8895 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG- 425 (479)
Q Consensus 348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~- 425 (479)
|+.|++|++||+++++.+.++++|...|++++|+|++.+|++++.|. |++||..+++....+.+|...|.+++|+|++
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999885 9999999999999999999999999999998
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 426 VLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 426 ~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
+|++|+.|++|++||++++++++.+
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 9999999999999999999887765
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=281.43 Aligned_cols=227 Identities=19% Similarity=0.312 Sum_probs=196.3
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEECC
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLE 291 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~ 291 (479)
+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...+.+++|+|++.++++++.+ +.|++||++
T Consensus 72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 466778899999999999999999999999999999988887 88899999999999999999998 999999987
Q ss_pred CCCcccC-----------CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-C-----------------CCCC
Q psy8895 292 YNKAPVQ-----------PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS-A-----------------TEES 342 (479)
Q Consensus 292 ~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~-----------------~~~~ 342 (479)
....... .........+.++.|+|++..+++++.++.|.+|+.... . .++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 5432211 000111227999999999999999999999999998762 1 1245
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---------------cEEEEeCCCCeEEe
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---------------NIKQWKCPEGKFIQ 407 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---------------~i~~w~~~~~~~~~ 407 (479)
..+++++.|+.|++||+++++.+..+. +...+.+++|+|++..+++++.+ .+.+||..+++.+.
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 679999999999999999999988886 77889999999999988887655 58999999999999
Q ss_pred eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895 408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
.+.+|...|.+++++|++ +|++++.||.|++|++++++
T Consensus 310 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 310 RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999999999999999998 89999999999999998764
No 32
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-34 Score=288.27 Aligned_cols=304 Identities=26% Similarity=0.459 Sum_probs=248.9
Q ss_pred eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF 105 (479)
Q Consensus 26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (479)
.+.+.||.+.|.. +++++|++|+||+.||+|++||+.+++.+.++.+|...|.++.+... .
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-------~----------- 171 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-------I----------- 171 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-------E-----------
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC-------E-----------
Confidence 3457899987643 35567899999999999999999999999999999999998887521 1
Q ss_pred eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895 106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS 185 (479)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (479)
+.+...++++++|+....
T Consensus 172 -----------l~s~~~dg~i~vwd~~~~--------------------------------------------------- 189 (445)
T 2ovr_B 172 -----------IISGSTDRTLKVWNAETG--------------------------------------------------- 189 (445)
T ss_dssp -----------EEEEETTSCEEEEETTTT---------------------------------------------------
T ss_pred -----------EEEEeCCCeEEEEECCcC---------------------------------------------------
Confidence 111234467777764310
Q ss_pred chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895 186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265 (479)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~ 265 (479)
+....+.+|...|.+++++ ++.+++|+.|+.|++||+.+++....+.+|...|.
T Consensus 190 ------------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 243 (445)
T 2ovr_B 190 ------------------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243 (445)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred ------------------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence 1123456789999999995 67899999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------
Q psy8895 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------ 339 (479)
Q Consensus 266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------ 339 (479)
++++ ++.++++++.|+.|++||+++.+..... ..+...+.++.+ ++..+++++.|+.|++|+......
T Consensus 244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE--CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe--cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 9999 6778999999999999999876544332 235677889988 678999999999999999875431
Q ss_pred ---------CCCCeEEEEeCCCcEEEEECCCCeeEEEEcc---CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895 340 ---------EESHPVITGSHDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI 406 (479)
Q Consensus 340 ---------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~ 406 (479)
.....+++|+.|+.|++||+++++.+.++.. |...|++++|+ +.++++++.| .|++||..+++.+
T Consensus 318 ~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 1245789999999999999999999999876 88899999996 4677777766 5999999999998
Q ss_pred eee-----cCCcceEEEEEEcCCC-EEEEEeCCCc----EEEEecCCC
Q psy8895 407 QNL-----PGHNAIINSICVNNEG-VLVSGADNGT----MCFWDWRTG 444 (479)
Q Consensus 407 ~~~-----~~h~~~v~~l~~~~~~-~l~sg~~dg~----i~lWd~~~~ 444 (479)
..+ .+|.+.|++++++|++ .+++|+.||+ |.+||+...
T Consensus 396 ~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 396 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 877 4788999999999999 7899999998 999998753
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-35 Score=285.90 Aligned_cols=226 Identities=15% Similarity=0.258 Sum_probs=194.5
Q ss_pred CCccEEEEEEcCC----CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCC
Q psy8895 218 HLGWVRCVAVEPG----NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 218 h~~~v~~~~~~~~----g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~ 292 (479)
|.+.|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||++.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 5667899999998 67999999999999999999999999999999999999999 899999999999999999987
Q ss_pred CCcccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------------
Q psy8895 293 NKAPVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------------------- 339 (479)
Q Consensus 293 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------------------- 339 (479)
.+...... ...+...+.++.|+|++..+++++.|+.|++|+......
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 66543321 134667899999999999999999999999999764210
Q ss_pred ---C--------CCCeEEEEeCCCcEEEEECCCCee--------------EEEEccCCCceEEEEEeCC--CcEEEEEcC
Q psy8895 340 ---E--------ESHPVITGSHDCTIRLWDLAAGKS--------------LCTLTNHKKSVRSVALHPT--LYMFASASP 392 (479)
Q Consensus 340 ---~--------~~~~l~sgs~d~~v~iwd~~~~~~--------------~~~~~~h~~~v~~i~~~~~--~~~l~s~s~ 392 (479)
. ....+++++.|+.|++||+.+.+. +..+..|...|++++|+|+ +.+|++++.
T Consensus 228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 0 045789999999999999987643 7788899999999999999 999999987
Q ss_pred Cc-EEEEeCCCCeE----EeeecCC--cceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895 393 DN-IKQWKCPEGKF----IQNLPGH--NAIINSICVNNEG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 393 d~-i~~w~~~~~~~----~~~~~~h--~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~ 443 (479)
|+ |++||+.+++. ...+.+| ...|++++|+|++ +|++++.||.|++||+.+
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 75 99999988753 4477777 7899999999998 899999999999999864
No 34
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-35 Score=286.32 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=167.0
Q ss_pred CCCccEEEEEEcCCCcEEEE--EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895 217 GHLGWVRCVAVEPGNEWFAT--GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~s--gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~ 294 (479)
.+...+.+++|+|||+++++ ++.|++|+|||+++++.+..+. |...|.+++|+||++++++++.| .+++|+..+++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 34567899999999998765 4478999999999999988876 77889999999999999998755 56677666555
Q ss_pred cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEcc
Q psy8895 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTN 370 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~ 370 (479)
.........+...+.+++|+|++..+++++.++.. ..++++||+..... ...+.+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~---------------------~~~i~~~~~~~~~~~~~~~~~~~~ 267 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK---------------------GIVLTKISIKSGNTSVLRSKQVTN 267 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC---------------------CEEEEEEEEETTEEEEEEEEEEES
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc---------------------eeEEeecccccceecceeeeeecC
Confidence 44332233456678999999999888777655421 11456677665432 346778
Q ss_pred CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE
Q psy8895 371 HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN 446 (479)
Q Consensus 371 h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~ 446 (479)
|...|++++|+|++.+||+++.|. |++||..+++++.. +.+|...|++++|+||+ +|||||.|++|||||+..++.
T Consensus 268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 999999999999999999999885 99999999999887 47999999999999999 899999999999999987653
No 35
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.5e-36 Score=282.52 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=170.7
Q ss_pred ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895 215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW 288 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w 288 (479)
+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ ....+.+|...|.+++|+|+ +.+|++++.|++|++|
T Consensus 53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132 (316)
T ss_dssp EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence 446888999999975 48999999999999999999874 56678899999999999998 7899999999999999
Q ss_pred ECCCCCcc-cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC---ee
Q psy8895 289 DLEYNKAP-VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG---KS 364 (479)
Q Consensus 289 d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~---~~ 364 (479)
|++..... .......+...+.++.|+|+... +.+ +.............+++|+.|++|++||++.. ++
T Consensus 133 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------GSL-IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp EECSSSCEEECCBTTSSSSCBCCCEECCCCCC--------------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred ecCCCCCcceeeeeccccCCcceEEEccccCC-------ccc-cccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 99764321 11111235567888899886421 000 00000111122457999999999999999765 46
Q ss_pred EEEEccCCCceEEEEEeCCC----cEEEEEcCCc-EEEEeCCCC---e-EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 365 LCTLTNHKKSVRSVALHPTL----YMFASASPDN-IKQWKCPEG---K-FIQNLPGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~~~----~~l~s~s~d~-i~~w~~~~~---~-~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
+.++.+|...|++++|+|++ .+|++++.|. |++|+..+. + ....+..|...|++++|+|++ +|++++.|+
T Consensus 205 ~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 77788999999999999986 7889988875 999998762 1 223456788999999999998 899999999
Q ss_pred cEEEEecCC
Q psy8895 435 TMCFWDWRT 443 (479)
Q Consensus 435 ~i~lWd~~~ 443 (479)
+|++|+...
T Consensus 285 ~v~lw~~~~ 293 (316)
T 3bg1_A 285 KVTLWKESV 293 (316)
T ss_dssp CEEEEEECT
T ss_pred eEEEEEECC
Confidence 999999763
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=310.66 Aligned_cols=372 Identities=13% Similarity=0.109 Sum_probs=242.1
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT 109 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (479)
.+|..+|++|+|+| |++|||++.|++|+|||+++++.+.++. |...|.++.|.++... ++
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~-----l~------------- 114 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDW-----ML------------- 114 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSE-----EE-------------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCE-----EE-------------
Confidence 35888999999999 8899999999999999999999988886 6678899988765432 11
Q ss_pred cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895 110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI 189 (479)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (479)
....++++++|++...+...+. +...... . .....+...+....+.|.....++....+...+
T Consensus 115 ---------sgs~dg~V~lwd~~~~~~~~~~-i~~~~~~-~------~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vl 177 (902)
T 2oaj_A 115 ---------IGLQNGSMIVYDIDRDQLSSFK-LDNLQKS-S------FFPAARLSPIVSIQWNPRDIGTVLISYEYVTLT 177 (902)
T ss_dssp ---------EEETTSCEEEEETTTTEEEEEE-ECCHHHH-H------TCSSSCCCCCCEEEEETTEEEEEEEECSSCEEE
T ss_pred ---------EEcCCCcEEEEECCCCccccce-ecccccc-c------cccccCCCCeEEEEEccCCCCEEEEEeCCCcEE
Confidence 1234567888876532110000 0000000 0 000000011111111111111122211111111
Q ss_pred HHHHhHhcCCCCCCCCCCcceeEEEe------------------cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q psy8895 190 IQQAKAKALPMPKPQWHAPWKLYRVI------------------SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG 251 (479)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~ 251 (479)
+.. + ..+....+ .+|...|.+++|+|+|++|++|+.|++|++||++++
T Consensus 178 Wd~-~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 178 YSL-V-------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EET-T-------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEC-C-------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 100 0 01112222 345688999999999999999999999999999998
Q ss_pred ceEEE--E---ec-------------CCcCEEEEEEc----CCC-CEEEEEECC-----CcEEEEE--------------
Q psy8895 252 KLKLS--L---TG-------------HVGSVRGLTVS----PRH-PYLFSCGDD-----RTVKCWD-------------- 289 (479)
Q Consensus 252 ~~~~~--~---~~-------------h~~~v~~v~~~----~~~-~~l~s~~~d-----~~i~~wd-------------- 289 (479)
+++.. + .. |...|.+++|+ |++ .++++|+.| +.+++|+
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 323 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG 323 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence 87653 2 12 34478999994 443 345555544 2455555
Q ss_pred ---------------------------------------------------------CCCCCcccC-----CCCCCCCCC
Q psy8895 290 ---------------------------------------------------------LEYNKAPVQ-----PGSMDSESG 307 (479)
Q Consensus 290 ---------------------------------------------------------~~~~~~~~~-----~~~~~~~~~ 307 (479)
+..+..... .....+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence 321110000 000000122
Q ss_pred eEE----------------------------------EEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895 308 IFS----------------------------------MTFDNSGSRLITTEADKTVKLYKEDDSAT-------------- 339 (479)
Q Consensus 308 i~~----------------------------------~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------- 339 (479)
+.+ ++|+|+++.+++++.|++|++||......
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~ 483 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL 483 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence 333 34567888999999999999999754321
Q ss_pred --------------CCCCeEEEEeCCCcEEEEECCCC-------------------------------------------
Q psy8895 340 --------------EESHPVITGSHDCTIRLWDLAAG------------------------------------------- 362 (479)
Q Consensus 340 --------------~~~~~l~sgs~d~~v~iwd~~~~------------------------------------------- 362 (479)
+++..|++|+.|++|++||+.++
T Consensus 484 ~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 23567999999999999999765
Q ss_pred --eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEe-----eec-CCcceEEEEEEc-----CCC---
Q psy8895 363 --KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQ-----NLP-GHNAIINSICVN-----NEG--- 425 (479)
Q Consensus 363 --~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~-----~~~-~h~~~v~~l~~~-----~~~--- 425 (479)
+++.++.+|.+.|++++|+|++ +||+++.|. |++||+.++..+. .+. +|.+.|++++|+ ||+
T Consensus 564 g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 564 GFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp EEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred ccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 2467888999999999999999 999999886 9999998877654 343 899999999999 884
Q ss_pred -EEEEEeCCCcEEEEec---CCCeEEEEEEEe
Q psy8895 426 -VLVSGADNGTMCFWDW---RTGYNFQRLQVR 453 (479)
Q Consensus 426 -~l~sg~~dg~i~lWd~---~~~~~~~~~~~~ 453 (479)
+|++|+.|++|++||+ .+|.....+.-.
T Consensus 643 ~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp EEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred eEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 8999999999999999 788877665433
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-34 Score=299.05 Aligned_cols=365 Identities=17% Similarity=0.211 Sum_probs=262.9
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeeccc----ceEeeecccccc-eEEEEecC--CCCccccceEEeccccE
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK----ANVYTLTGHTNT-IASVVTQA--SEPQVGTKTVLLESCER 102 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~----~~~~~~~~h~~~-v~~~~~~~--~~~~~~~~~~~~~~~~~ 102 (479)
..|.+.|.+++|+|+|++||+++ |+.|+|||++++ +....+.+|... |.++.|.+ +... ++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-----l~------ 82 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-----LC------ 82 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-----EE------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-----EE------
Confidence 47899999999999999999998 899999999999 889999999999 99999987 5421 11
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
....++.+++|++........ ........ +. .+...+....+.+. ...++..
T Consensus 83 ----------------s~~~dg~v~vw~~~~~~~~~~-----~~~~~~~~--~~----~~~~~v~~~~~s~~-~~~l~~~ 134 (615)
T 1pgu_A 83 ----------------SGDESGKVIVWGWTFDKESNS-----VEVNVKSE--FQ----VLAGPISDISWDFE-GRRLCVV 134 (615)
T ss_dssp ----------------EEETTSEEEEEEEEEEGGGTE-----EEEEEEEE--EE----CCSSCEEEEEECTT-SSEEEEE
T ss_pred ----------------EecCCCEEEEEeCCCCccccc-----ccccccch--hh----cccccEEEEEEeCC-CCEEEEe
Confidence 122346778887642100000 00000000 00 00001111111111 1122221
Q ss_pred CCCc---hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895 183 TASN---TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLT 258 (479)
Q Consensus 183 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~ 258 (479)
.... ..+. .|. ..+....+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+.
T Consensus 135 ~~~~~~~~~v~-------------~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 135 GEGRDNFGVFI-------------SWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp ECCSSCSEEEE-------------ETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred ccCCCCccEEE-------------EEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence 1110 1110 122 2234567889999999999999998 89999999999999999999999999
Q ss_pred cCCc---CEEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy8895 259 GHVG---SVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKLY 332 (479)
Q Consensus 259 ~h~~---~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~ 332 (479)
+|.. .|.+++|+|+ +.++++++.|+.|++||+++.+........ .+...+.++.|+ ++..+++++.|+.+++|
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence 9999 9999999999 999999999999999999877654332111 567789999999 99999999999999999
Q ss_pred eCCCCCC--------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC---------
Q psy8895 333 KEDDSAT--------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT--------- 383 (479)
Q Consensus 333 ~~~~~~~--------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~--------- 383 (479)
+...... .....+++++.|+.|++||+.+++++..+.+|...|++++| |+
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~ 358 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGR 358 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCe
Confidence 9875321 13457899999999999999988888888777666655554 32
Q ss_pred --------------------------------------------------------------------------------
Q psy8895 384 -------------------------------------------------------------------------------- 383 (479)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (479)
T Consensus 359 i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 359 IMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence
Q ss_pred -----------------CcEEEEEcC-C-cEEEEeCCCCeEE-eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895 384 -----------------LYMFASASP-D-NIKQWKCPEGKFI-QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 384 -----------------~~~l~s~s~-d-~i~~w~~~~~~~~-~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~ 442 (479)
+.++++++. + .+++||..+++.. ..+.+|...|.+++++|++ +|++++.||.|++||++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 223333333 3 3666666665554 6677899999999999998 99999999999999999
Q ss_pred CCeEEEEE
Q psy8895 443 TGYNFQRL 450 (479)
Q Consensus 443 ~~~~~~~~ 450 (479)
+++.+..+
T Consensus 519 ~~~~~~~~ 526 (615)
T 1pgu_A 519 SREVKTSR 526 (615)
T ss_dssp TTEEEECC
T ss_pred CCcceeEe
Confidence 99876543
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-35 Score=289.75 Aligned_cols=304 Identities=13% Similarity=0.130 Sum_probs=234.2
Q ss_pred EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc------eEeeecccccceEEEEecCCCCccccceEEe
Q psy8895 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA------NVYTLTGHTNTIASVVTQASEPQVGTKTVLL 97 (479)
Q Consensus 24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 97 (479)
.+.+.+.+|.++|++++|+| ++||+|+.||+|+|||+.+++ .+..+.+|...|.++.|.++....+...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~--- 81 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL--- 81 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE---
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc---
Confidence 45667899999999999999 899999999999999999988 7888999999999998865400000000
Q ss_pred ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895 98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN 177 (479)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
. +++ ....++.+++|++...+.
T Consensus 82 ----~-~l~------------s~~~dg~i~iw~~~~~~~----------------------------------------- 103 (397)
T 1sq9_A 82 ----C-LVA------------TTSFSGDLLFYRITREDE----------------------------------------- 103 (397)
T ss_dssp ----E-EEE------------EEETTSCEEEEEEEECTT-----------------------------------------
T ss_pred ----c-EEE------------EEcCCCCEEEEEccCCcc-----------------------------------------
Confidence 0 111 112346677776432100
Q ss_pred ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCC-----CccEEEEEEc----CCCcE-EEEEeCCCeEEEEE
Q psy8895 178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGH-----LGWVRCVAVE----PGNEW-FATGSADKIIKVWD 247 (479)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~g~~-l~sgs~d~~i~iWd 247 (479)
........+.+| ...|.+++|+ |++++ |++++.|+.|++||
T Consensus 104 -----------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 104 -----------------------------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp -----------------------------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred -----------------------------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 000012234456 5889999999 99999 99999999999999
Q ss_pred CCC------CceEE-----EE-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-CCC---C
Q psy8895 248 LAT------GKLKL-----SL-------TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS-MDS---E 305 (479)
Q Consensus 248 ~~~------~~~~~-----~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~---~ 305 (479)
+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.|+.|++||++..+....... ..+ .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 988 65555 66 4488899999999999 999999999999999987654432211 113 6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC---CcEEEEECCCCeeEEEEcc------------
Q psy8895 306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD---CTIRLWDLAAGKSLCTLTN------------ 370 (479)
Q Consensus 306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d---~~v~iwd~~~~~~~~~~~~------------ 370 (479)
..+.++.|+|++..++ +++.| +.|++||+++++.+..+..
T Consensus 234 ~~i~~i~~~~~~~~l~-------------------------~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLA-------------------------IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp CCEEEEEECSSTTEEE-------------------------EEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred CccceEEECCCCCEEE-------------------------EEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence 7899999998877654 55556 7788888888888888888
Q ss_pred -CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec------CC---------------cceEEEEEEcCCC--
Q psy8895 371 -HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP------GH---------------NAIINSICVNNEG-- 425 (479)
Q Consensus 371 -h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~-- 425 (479)
|...|.+++|+|++.+|++++.|. |++||+.+++.+..+. +| ...|.+++++|++
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 999999999999999999998775 9999999999999998 88 9999999999995
Q ss_pred ---------EEEEEeCCCcEEEEecCCCe
Q psy8895 426 ---------VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 426 ---------~l~sg~~dg~i~lWd~~~~~ 445 (479)
+|++++.||.|++||+++|.
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccceEEEecCCCcEEEEEcCCCC
Confidence 89999999999999998863
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.7e-35 Score=285.72 Aligned_cols=293 Identities=17% Similarity=0.251 Sum_probs=219.8
Q ss_pred eEEeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecccceEeeec--ccccceEEEEecCCCCccccceEEecc
Q psy8895 23 LTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRTKANVYTLT--GHTNTIASVVTQASEPQVGTKTVLLES 99 (479)
Q Consensus 23 ~~~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~ 99 (479)
..+.+.+.+|.+.|++++|+|++ ++||+|+.|++|+|||+.+++....+. +|...|.++.|.+.+..
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---------- 132 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN---------- 132 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE----------
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC----------
Confidence 45667789999999999999999 999999999999999999888777665 69999999998663211
Q ss_pred ccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccc
Q psy8895 100 CERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQL 179 (479)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (479)
.++ +...++.+++|++.... .
T Consensus 133 ----~l~------------s~~~d~~i~iwd~~~~~--------------~----------------------------- 153 (383)
T 3ei3_B 133 ----QLF------------VSSIRGATTLRDFSGSV--------------I----------------------------- 153 (383)
T ss_dssp ----EEE------------EEETTTEEEEEETTSCE--------------E-----------------------------
T ss_pred ----EEE------------EEeCCCEEEEEECCCCc--------------e-----------------------------
Confidence 111 11234667777653100 0
Q ss_pred ccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec
Q psy8895 180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG 259 (479)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~ 259 (479)
+......+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+
T Consensus 154 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 154 ------------------------------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp ------------------------------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred ------------------------------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 000011245688999999999999999999999999999 5778889999
Q ss_pred CCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q psy8895 260 HVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDD 336 (479)
Q Consensus 260 h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~ 336 (479)
|...|.+++|+|+++ ++++++.|+.|++||++..+.... .....+...+.++.|+| ++..+++++.|+.|++|+.
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~-- 280 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS-- 280 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET--
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC--
Confidence 999999999999999 899999999999999986322110 01124567899999999 8887766666555555554
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-----------------CCceEEEEEeCCCcEEEEEcCC-cEEEE
Q psy8895 337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-----------------KKSVRSVALHPTLYMFASASPD-NIKQW 398 (479)
Q Consensus 337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-----------------~~~v~~i~~~~~~~~l~s~s~d-~i~~w 398 (479)
++++....+.+| ...+..++++|++.+ +++.| .|++|
T Consensus 281 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 281 -----------------------YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIY 335 (383)
T ss_dssp -----------------------TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEE
T ss_pred -----------------------CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEE
Confidence 443333333322 234556777777776 45555 59999
Q ss_pred eCCCCeEEeeecC--CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895 399 KCPEGKFIQNLPG--HNAIINSICVNNEG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 399 ~~~~~~~~~~~~~--h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~ 443 (479)
|..+++.+..+.+ |...+.+++|+|++ +|++|+ ||.|++||+++
T Consensus 336 d~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 336 DANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999987 46788888999999 888887 99999999875
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=299.12 Aligned_cols=314 Identities=15% Similarity=0.217 Sum_probs=246.7
Q ss_pred cccceEEEEEccCCc-eEEEe----------cCCCeEEEEeecccce---EeeecccccceEEEEecCCCCccccceEEe
Q psy8895 32 HLSSVNTISLHPTID-VLITA----------GRDSTARVWDVRTKAN---VYTLTGHTNTIASVVTQASEPQVGTKTVLL 97 (479)
Q Consensus 32 H~~~V~~l~~sp~g~-~laSg----------s~D~~vriWd~~t~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 97 (479)
+...|.+++|+|+|+ +||+| +.|++|+|||+.++.. +..+ .|...+.++.|.++... +
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-----l-- 82 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI-----I-- 82 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC-----E--
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe-----E--
Confidence 446889999999997 99999 9999999999998863 3333 58888999998765432 1
Q ss_pred ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895 98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN 177 (479)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
+ ....++.+++|+.....
T Consensus 83 --------~------------~~~~dg~v~vw~~~~~~------------------------------------------ 100 (416)
T 2pm9_A 83 --------A------------GALDNGSLELYSTNEAN------------------------------------------ 100 (416)
T ss_dssp --------E------------EEESSSCEEEECCSSTT------------------------------------------
T ss_pred --------E------------EEccCCeEEEeeccccc------------------------------------------
Confidence 1 11234566777643100
Q ss_pred ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc----
Q psy8895 178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGK---- 252 (479)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~---- 252 (479)
...+....+.+|.+.|.+++|+|+ +++|++++.|+.|++||+.+++
T Consensus 101 -----------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 101 -----------------------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp -----------------------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred -----------------------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 000122356689999999999998 8999999999999999999886
Q ss_pred --eEE---EEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCC----CCCCCeEEEEEeCCC-CEEE
Q psy8895 253 --LKL---SLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSM----DSESGIFSMTFDNSG-SRLI 321 (479)
Q Consensus 253 --~~~---~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~~-~~l~ 321 (479)
... .+.+|...|.+++|+|+ +.++++++.|+.|++||++..+........ .+...+.++.|+|++ ..++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 332 24678999999999999 789999999999999999876554332111 126789999999997 6899
Q ss_pred EEeCCC---eEEEEeCCCCC-------------------CC-CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE
Q psy8895 322 TTEADK---TVKLYKEDDSA-------------------TE-ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378 (479)
Q Consensus 322 ~~~~d~---~i~~~~~~~~~-------------------~~-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i 378 (479)
+++.++ .|++|+..... .+ +...+++++.|++|++||+++++++.++..|...|+++
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 311 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence 999998 99999976531 01 34679999999999999999999999999999999999
Q ss_pred EEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeee-----------------------------------cCCcceEEEEEE
Q psy8895 379 ALHPTL-YMFASASPDN-IKQWKCPEGKFIQNL-----------------------------------PGHNAIINSICV 421 (479)
Q Consensus 379 ~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~-----------------------------------~~h~~~v~~l~~ 421 (479)
+|+|++ .++++++.|+ |++|++.+++..... ..|...+.+++|
T Consensus 312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999998 8999998775 999999776532221 126677889999
Q ss_pred cCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 422 NNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 422 ~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
+|+| +|++|+.|++|+||++.++
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEeccC
Confidence 9999 8899999999999999875
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-35 Score=283.35 Aligned_cols=290 Identities=18% Similarity=0.196 Sum_probs=228.4
Q ss_pred cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV 106 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (479)
+..|.++|++++|+|++++||+|+.|++|++||+++++ .+.++.+|...+.++.|.++... ++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~---------- 68 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-----IV---------- 68 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-----EE----------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE-----EE----------
Confidence 45689999999999999999999999999999999987 88899999999999998765321 11
Q ss_pred ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895 107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN 186 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (479)
....++.+++|++...+
T Consensus 69 ------------~~~~dg~i~vwd~~~~~--------------------------------------------------- 85 (372)
T 1k8k_C 69 ------------TCGTDRNAYVWTLKGRT--------------------------------------------------- 85 (372)
T ss_dssp ------------EEETTSCEEEEEEETTE---------------------------------------------------
T ss_pred ------------EEcCCCeEEEEECCCCe---------------------------------------------------
Confidence 11234567777642100
Q ss_pred hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEEecCCc
Q psy8895 187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSLTGHVG 262 (479)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~~~h~~ 262 (479)
......+.+|...|.+++|+|++++|++++.|+.|++||+..+.. .....+|..
T Consensus 86 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 86 ----------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp ----------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred ----------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 000112346888999999999999999999999999999988762 233367889
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCCC------------------CcccCCCCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN------------------KAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 324 (479)
.|.+++|+|++.++++++.|+.|++||++.. +..... ..+...+.++.|+|++..
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----- 216 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSR----- 216 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSE-----
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCE-----
Confidence 9999999999999999999999999997521 111111 134556778888776654
Q ss_pred CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCC--
Q psy8895 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE-- 402 (479)
Q Consensus 325 ~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~-- 402 (479)
+++++.|+.|++||+++++++..+..|...|++++|+|++.+++++.++.+++|+..+
T Consensus 217 --------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~ 276 (372)
T 1k8k_C 217 --------------------VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA 276 (372)
T ss_dssp --------------------EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTT
T ss_pred --------------------EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcC
Confidence 4667778888999999999999999999999999999999999999777899999877
Q ss_pred CeE--------------------------------E------eee-cCCcceEEEEEEc-CC----CEEEEEeCCCcEEE
Q psy8895 403 GKF--------------------------------I------QNL-PGHNAIINSICVN-NE----GVLVSGADNGTMCF 438 (479)
Q Consensus 403 ~~~--------------------------------~------~~~-~~h~~~v~~l~~~-~~----~~l~sg~~dg~i~l 438 (479)
++. . ..+ .+|...|+++++. ++ .+|+||+.||+|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~ 356 (372)
T 1k8k_C 277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 356 (372)
T ss_dssp TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE
T ss_pred ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEE
Confidence 421 0 233 4899999999854 66 59999999999999
Q ss_pred EecCCCe
Q psy8895 439 WDWRTGY 445 (479)
Q Consensus 439 Wd~~~~~ 445 (479)
||+++++
T Consensus 357 W~~~~~~ 363 (372)
T 1k8k_C 357 WDVRSLE 363 (372)
T ss_dssp EEHHHHH
T ss_pred EEecChh
Confidence 9998764
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-36 Score=291.30 Aligned_cols=289 Identities=14% Similarity=0.149 Sum_probs=217.7
Q ss_pred cCCcccceEEEEEccCCceEEEecCCCeEEEEeeccc--ceEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV 106 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (479)
+..|.++|++++|+|+|++||+|+.|++|+|||+.++ +.+.++.+|...|.++.|.++... +
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l----------- 70 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR-----I----------- 70 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCC-----E-----------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCE-----E-----------
Confidence 3456789999999999999999999999999999998 788899999999999999775432 1
Q ss_pred ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895 107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN 186 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (479)
.+...++.+++|++...+
T Consensus 71 -----------~s~s~d~~v~vwd~~~~~--------------------------------------------------- 88 (377)
T 3dwl_C 71 -----------VTCSQDRNAYVYEKRPDG--------------------------------------------------- 88 (377)
T ss_dssp -----------EEEETTSSEEEC---------------------------------------------------------
T ss_pred -----------EEEeCCCeEEEEEcCCCC---------------------------------------------------
Confidence 112245677888753210
Q ss_pred hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEec-CCc
Q psy8895 187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTG-HVG 262 (479)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~-h~~ 262 (479)
.++....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.+ |..
T Consensus 89 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 89 ---------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp ---------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred ---------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 001112355789999999999999999999999999999999886 4677877 999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc---------------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCC
Q psy8895 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV---------------QPGSMDSESGIFSMTFDNSGSRLITTEADK 327 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 327 (479)
.|.+++|+|++.++++++.|+.|++||++...... ......+...+.++.|+|++++
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-------- 219 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-------- 219 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC--------
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE--------
Confidence 99999999999999999999999999985322100 0000145567888888887665
Q ss_pred eEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG 403 (479)
Q Consensus 328 ~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~ 403 (479)
+++++.|++|++||+++++. +..+.+|...|++++|+|++.++++++++.+.+|+....
T Consensus 220 -----------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 282 (377)
T 3dwl_C 220 -----------------LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES 282 (377)
T ss_dssp -----------------EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC-
T ss_pred -----------------EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCC
Confidence 45667777788888887766 778889999999999999999999999998888877522
Q ss_pred eE--E----------------------------------e----------------eecCCcceEEEEEEcCCC-----E
Q psy8895 404 KF--I----------------------------------Q----------------NLPGHNAIINSICVNNEG-----V 426 (479)
Q Consensus 404 ~~--~----------------------------------~----------------~~~~h~~~v~~l~~~~~~-----~ 426 (479)
.. . . ....|...|+++++.++. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~ 362 (377)
T 3dwl_C 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA 362 (377)
T ss_dssp --CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEE
T ss_pred ceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEE
Confidence 10 0 0 011399999999865433 6
Q ss_pred EEEEeCCCcEEEEec
Q psy8895 427 LVSGADNGTMCFWDW 441 (479)
Q Consensus 427 l~sg~~dg~i~lWd~ 441 (479)
|+|||.||+|++||+
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 999999999999985
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=281.24 Aligned_cols=229 Identities=17% Similarity=0.280 Sum_probs=188.5
Q ss_pred CCCccEEEEEEcCC---CcEEEEEeCCCeEEEEECCCCc-eEEEEecCCcCEEEEE------EcCCCCEEEEEECCCcEE
Q psy8895 217 GHLGWVRCVAVEPG---NEWFATGSADKIIKVWDLATGK-LKLSLTGHVGSVRGLT------VSPRHPYLFSCGDDRTVK 286 (479)
Q Consensus 217 ~h~~~v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~~~-~~~~~~~h~~~v~~v~------~~~~~~~l~s~~~d~~i~ 286 (479)
+|...|.+++|+|+ +++|++|+.|+.|++||+.+++ ....+.+|...|.+++ |+|++.++++++.|+.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 35677889999998 6999999999999999999988 8889999999999995 478899999999999999
Q ss_pred EEECCCCCccc-CCC--CCCCCCCeEEEE----EeCCCCEEEEEeCCCeEEEEeCCCCC----------------CC---
Q psy8895 287 CWDLEYNKAPV-QPG--SMDSESGIFSMT----FDNSGSRLITTEADKTVKLYKEDDSA----------------TE--- 340 (479)
Q Consensus 287 ~wd~~~~~~~~-~~~--~~~~~~~i~~~~----~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~--- 340 (479)
+||++..+... ... .......+.++. |++++..+++++.|+.|++|+..... .+
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence 99998765222 111 111234788888 67899999999999999999987542 12
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeeEEEEc-----cCCCceEEEEEeCCCc-EEEEEcCCc-EEEEeCCCC----------
Q psy8895 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLT-----NHKKSVRSVALHPTLY-MFASASPDN-IKQWKCPEG---------- 403 (479)
Q Consensus 341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-----~h~~~v~~i~~~~~~~-~l~s~s~d~-i~~w~~~~~---------- 403 (479)
....+++++.|+.|++||+++++.+..+. +|...|++++|+|++. +|++++.|+ +++||+.++
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 56789999999999999998876655544 8999999999999988 788888774 999998643
Q ss_pred ---------eEEeeecCCcceEEEEEEcCCC-EEE-EEeCCCcEEEEecCCCe
Q psy8895 404 ---------KFIQNLPGHNAIINSICVNNEG-VLV-SGADNGTMCFWDWRTGY 445 (479)
Q Consensus 404 ---------~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~~dg~i~lWd~~~~~ 445 (479)
+.+..+.+|...|.+++|+|++ +|+ +++.||.|++||+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 4577788999999999999998 676 89999999999998754
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-34 Score=272.02 Aligned_cols=308 Identities=17% Similarity=0.258 Sum_probs=247.8
Q ss_pred cccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccC
Q psy8895 32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAG 111 (479)
Q Consensus 32 H~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (479)
|.++|.+++|+|||++++++..++.+.+|+...........+|...+.++.|.++... + +
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l----------~----- 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-----V----------Y----- 67 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE-----E----------E-----
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE-----E----------E-----
Confidence 4568999999999999999998888888877665555555689999999998765421 1 1
Q ss_pred ceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHH
Q psy8895 112 FLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ 191 (479)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (479)
... ++.+++|+....+..
T Consensus 68 -------~~~-dg~i~iw~~~~~~~~------------------------------------------------------ 85 (337)
T 1gxr_A 68 -------TGG-KGCVKVWDISHPGNK------------------------------------------------------ 85 (337)
T ss_dssp -------EEC-BSEEEEEETTSTTCC------------------------------------------------------
T ss_pred -------EcC-CCeEEEEECCCCCce------------------------------------------------------
Confidence 111 356777765321000
Q ss_pred HHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEE
Q psy8895 192 QAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTV 269 (479)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~ 269 (479)
.... .....+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|
T Consensus 86 ---------------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 86 ---------------SPVS-QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp ---------------SCSE-EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred ---------------eeee-cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 0000 00123688899999999999999999999999999999887 56678889999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------
Q psy8895 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------- 338 (479)
Q Consensus 270 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------- 338 (479)
+|++.++++++.|+.|++||+++.+..... ..+...+.++.|+|++..+++++.|+.+++|+.....
T Consensus 150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v 227 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeee--ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCce
Confidence 999999999999999999999876544332 2356789999999999999999999999999986542
Q ss_pred -----CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC
Q psy8895 339 -----TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH 412 (479)
Q Consensus 339 -----~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h 412 (479)
.++...+++++.|+.|++||++.++. ..+..|...|.+++|+|++.++++++.++ +++|+..+++.+.. ..|
T Consensus 228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~ 305 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKE 305 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EEC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecC
Confidence 13456799999999999999998765 46778999999999999999999988775 99999999887744 357
Q ss_pred cceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895 413 NAIINSICVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 413 ~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
...|.+++++|++ +|++++.||.|++||+
T Consensus 306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 8899999999998 8999999999999996
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.1e-34 Score=304.21 Aligned_cols=333 Identities=19% Similarity=0.258 Sum_probs=263.4
Q ss_pred EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI 103 (479)
Q Consensus 24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (479)
.+.+++.+|.+.|.+++|||+|++||+|+.||+|+|||+.+++.+.++.+|...|.++.|.++... +
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l-------- 70 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW-----I-------- 70 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE-----E--------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE-----E--------
Confidence 345678899999999999999999999999999999999999999999999999999998765321 1
Q ss_pred EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895 104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT 183 (479)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (479)
+ ....++.+++|+....
T Consensus 71 --~------------~~~~dg~i~vw~~~~~------------------------------------------------- 87 (814)
T 3mkq_A 71 --I------------VGSDDFRIRVFNYNTG------------------------------------------------- 87 (814)
T ss_dssp --E------------EEETTSEEEEEETTTC-------------------------------------------------
T ss_pred --E------------EEeCCCeEEEEECCCC-------------------------------------------------
Confidence 1 1123456666654210
Q ss_pred CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCc
Q psy8895 184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVG 262 (479)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~ 262 (479)
+....+.+|.+.|.+++|+|++++|++++.|+.|++||+.++ .....+.+|..
T Consensus 88 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 88 --------------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp --------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred --------------------------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 112345679999999999999999999999999999999987 66778899999
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCC-
Q psy8895 263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN--SGSRLITTEADKTVKLYKEDDSA- 338 (479)
Q Consensus 263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~- 338 (479)
.|.+++|+| ++..+++++.|+.|++||++........ ...+...+.++.|+| ++..+++++.++.+++|+.....
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE-ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE-ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 999999999 8889999999999999999765543322 122336788999998 89999999999999999976532
Q ss_pred ----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc--EEEEEcCCcEEEEeC
Q psy8895 339 ----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY--MFASASPDNIKQWKC 400 (479)
Q Consensus 339 ----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~d~i~~w~~ 400 (479)
.+....+++++.||+|++||+.+++.+..+..|...+.+++|+|++. ++++++++.+.+|+.
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 13456799999999999999999999999999999999999999986 688888888888886
Q ss_pred CCCeE----------Ee---------------------------------eecCCcceEEEEEEcCCC-EEEEEeCCCcE
Q psy8895 401 PEGKF----------IQ---------------------------------NLPGHNAIINSICVNNEG-VLVSGADNGTM 436 (479)
Q Consensus 401 ~~~~~----------~~---------------------------------~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i 436 (479)
..... +. .+..+...+.+++++|++ ++++++ |+.+
T Consensus 301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~ 379 (814)
T 3mkq_A 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY 379 (814)
T ss_dssp SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE
T ss_pred CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE
Confidence 54321 11 113344567899999999 777777 8999
Q ss_pred EEEecCCCeEEEEEEEeEecCCCC
Q psy8895 437 CFWDWRTGYNFQRLQVRCVSGFPK 460 (479)
Q Consensus 437 ~lWd~~~~~~~~~~~~~~~~~~~~ 460 (479)
.+|++........-+..++..-|+
T Consensus 380 ~i~~~~~~~~~~~~~i~~~~~spd 403 (814)
T 3mkq_A 380 VIYTALAWRNKAFGKCQDFVWGPD 403 (814)
T ss_dssp EEEETTTTEEEEEEECSEEEECTT
T ss_pred EEEECccccccCCCceEEEEEeCC
Confidence 999987654444334444443343
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-34 Score=271.80 Aligned_cols=263 Identities=21% Similarity=0.347 Sum_probs=213.3
Q ss_pred ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCC-----CceEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD 282 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 282 (479)
..+..++.+|.+.|.+++|+|++ ++|++|+.|++|++||+.. +..+..+.+|...|.+++|+|++.++++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 45567899999999999999965 8999999999999999864 23466889999999999999999999999999
Q ss_pred CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------C------
Q psy8895 283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------E------ 340 (479)
Q Consensus 283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~------ 340 (479)
++|++||+++++..... ..+...|.++.|+|++..+++++.|++|++|+...... +
T Consensus 87 ~~v~~wd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 87 KTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-----
T ss_pred CEEEEEECCCCCeeEEE--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999999877654332 34677899999999999999999999999999764210 0
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI 419 (479)
Q Consensus 341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l 419 (479)
....+++++.|++|++||+++.+....+.+|...|++++|+|++.+|++++.|. |++||..+++.+..+..+ ..|.++
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 233699999999999999999999999999999999999999999999998875 999999999998888765 579999
Q ss_pred EEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecCCCCCceEEeeehhhhccc
Q psy8895 420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNR 475 (479)
Q Consensus 420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (479)
+|+|++ +|++++ ++.+++|++.+++.+..++...............+++|++-|+
T Consensus 244 ~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 244 AFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 999999 566655 5569999999887765543221111111122345566666543
No 47
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-33 Score=269.09 Aligned_cols=242 Identities=18% Similarity=0.299 Sum_probs=209.8
Q ss_pred ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w 288 (479)
.+...++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEe
Q psy8895 289 DLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGS 349 (479)
Q Consensus 289 d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs 349 (479)
|+........ .....+...+.++.|.+++. +++++.|++|++|+..... .++...+++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 9976532111 11124567899999988764 8899999999999976532 13456799999
Q ss_pred CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecC--CcceEEEEEEcCCC-
Q psy8895 350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPG--HNAIINSICVNNEG- 425 (479)
Q Consensus 350 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~- 425 (479)
.|++|++||+++++++.++.+|...|++++|+|++.+|++++.|. |++||+.+++.+..+.. +...|.+++|+|++
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 999999999999999999999999999999999999999998885 99999999887766543 34579999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 426 VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 426 ~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+|++|+.||.|++||+.++..+..++
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEEcccCcEeeEee
Confidence 89999999999999999988776653
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-33 Score=281.01 Aligned_cols=305 Identities=21% Similarity=0.317 Sum_probs=246.1
Q ss_pred eeecCCcccce-EEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895 26 IRHYHGHLSSV-NTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM 104 (479)
Q Consensus 26 ~~~~~gH~~~V-~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (479)
...+.||.++| .++++ ++++|+||+.||+|++||+.+++.+.++.+|.+.|.++.|.++. .+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~------~l--------- 176 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------IL--------- 176 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT------EE---------
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC------EE---------
Confidence 34677898886 56555 56899999999999999999999999999999999999986532 11
Q ss_pred EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895 105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA 184 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (479)
.+...++++++|+....
T Consensus 177 -------------~s~s~dg~i~vwd~~~~-------------------------------------------------- 193 (464)
T 3v7d_B 177 -------------VSGSTDRTVRVWDIKKG-------------------------------------------------- 193 (464)
T ss_dssp -------------EEEETTSCEEEEETTTT--------------------------------------------------
T ss_pred -------------EEEeCCCCEEEEECCCC--------------------------------------------------
Confidence 12234567777765310
Q ss_pred CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEc--CCCcEEEEEeCCCeEEEEECCCCce---------
Q psy8895 185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE--PGNEWFATGSADKIIKVWDLATGKL--------- 253 (479)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~g~~l~sgs~d~~i~iWd~~~~~~--------- 253 (479)
+....+.+|.+.|.+++|+ ++++++++|+.|+.|++||+.++..
T Consensus 194 -------------------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 194 -------------------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp -------------------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred -------------------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 1123456799999999998 5789999999999999999987652
Q ss_pred --------------EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCE
Q psy8895 254 --------------KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSR 319 (479)
Q Consensus 254 --------------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (479)
...+.+|...|.++ ++++.++++++.|+.|++||+++.+..... ..+...+.++.|+|++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCCCCE
Confidence 45678899888877 567789999999999999999876654332 245678999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC
Q psy8895 320 LITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL 384 (479)
Q Consensus 320 l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 384 (479)
+++++.|+.|++|+...... .....+++|+.|++|++||+++++...... |...+..++|+|++
T Consensus 325 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD 403 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence 99999999999999865421 124679999999999999999887766653 66778889999999
Q ss_pred cEEEEEcCCcEEEEeCCCCeEEee-ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895 385 YMFASASPDNIKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440 (479)
Q Consensus 385 ~~l~s~s~d~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd 440 (479)
.++++++++.+++||+.+++.+.. +.+|...|.+++++++..+++++.||.+.+|-
T Consensus 404 ~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 404 NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 999999977899999999999886 67899999999998655777888888766554
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.3e-35 Score=286.25 Aligned_cols=306 Identities=14% Similarity=0.198 Sum_probs=233.2
Q ss_pred cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCce
Q psy8895 34 SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFL 113 (479)
Q Consensus 34 ~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (479)
..+++++|+|+|++|++|+.|++|++||+.+++....+..| ..+....+.++... ++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------l~------- 113 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR---------------FI------- 113 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE---------------EE-------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE---------------EE-------
Confidence 44568999999999999999999999999988877777666 22222233332110 11
Q ss_pred eeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHH
Q psy8895 114 LSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA 193 (479)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 193 (479)
....++.+++|+...
T Consensus 114 -----~~~~dg~i~iwd~~~------------------------------------------------------------ 128 (420)
T 3vl1_A 114 -----LGTTEGDIKVLDSNF------------------------------------------------------------ 128 (420)
T ss_dssp -----EEETTSCEEEECTTS------------------------------------------------------------
T ss_pred -----EEECCCCEEEEeCCC------------------------------------------------------------
Confidence 112345566665321
Q ss_pred hHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC
Q psy8895 194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273 (479)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~ 273 (479)
.+....+.+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 129 ---------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 129 ---------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp ---------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred ---------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence 01122345799999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCCcccCCCC-CCCCCCeEE---------------------EEEeCCCCEEEEEeCCCeEEE
Q psy8895 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGS-MDSESGIFS---------------------MTFDNSGSRLITTEADKTVKL 331 (479)
Q Consensus 274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~i~~---------------------~~~~~~~~~l~~~~~d~~i~~ 331 (479)
.++++++.|+.|++||+++.+....... ..+...+.+ +.|+|++..+++++.|+.|++
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 273 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence 9999999999999999987654432211 122333444 445788899999999999999
Q ss_pred EeCCCCCC------------------CCCC-eEEEEeCCCcEEEEECCCCe-eEEEEcc-CCCceEEEEEeCCCcEEEEE
Q psy8895 332 YKEDDSAT------------------EESH-PVITGSHDCTIRLWDLAAGK-SLCTLTN-HKKSVRSVALHPTLYMFASA 390 (479)
Q Consensus 332 ~~~~~~~~------------------~~~~-~l~sgs~d~~v~iwd~~~~~-~~~~~~~-h~~~v~~i~~~~~~~~l~s~ 390 (479)
|+...... +... .+++|+.|+.|++||+++++ ++..+.. |...|+++.+. ++.+|+++
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~ 352 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSS 352 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEE
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEe
Confidence 99865321 2234 89999999999999999874 4777776 67788888665 67788888
Q ss_pred cCCc-EEEEeCCCCe---------EEeeecCCcceEEEEEEcCCCE----EEEEeCCCcEEEEecCC
Q psy8895 391 SPDN-IKQWKCPEGK---------FIQNLPGHNAIINSICVNNEGV----LVSGADNGTMCFWDWRT 443 (479)
Q Consensus 391 s~d~-i~~w~~~~~~---------~~~~~~~h~~~v~~l~~~~~~~----l~sg~~dg~i~lWd~~~ 443 (479)
+.|. +++|++...+ ....+.+|...|.+++|+|++. +++.+.+|.+.+|+++.
T Consensus 353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 8775 9999986631 1234567888999999998765 88888999999999864
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.6e-33 Score=267.54 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=173.5
Q ss_pred ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCC---------ceEEEEecCCcCEEEEEEcCC--CCEEEEEEC
Q psy8895 215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATG---------KLKLSLTGHVGSVRGLTVSPR--HPYLFSCGD 281 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~ 281 (479)
+.+|.+.|.+++|+| ++++|++|+.|+.|++||+.++ +....+.+|...|.+++|+|+ +.++++++.
T Consensus 53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 456888999999999 6999999999999999999887 557788899999999999999 999999999
Q ss_pred CCcEEEEECCCCCcccCC-----------CCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895 282 DRTVKCWDLEYNKAPVQP-----------GSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSATEESHPVIT 347 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s 347 (479)
|+.|++||++..+..... ....+...+.++.|+|+ +.. +++
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------------------l~~ 187 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK-------------------------LAV 187 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE-------------------------EEE
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE-------------------------EEE
Confidence 999999999866543211 11234566788888875 444 455
Q ss_pred EeCCCcEEEEECCCCee--EEEEccCCCceEEEEEeCCC----cEEEEEcCCc-EEEEeCCCC-----------------
Q psy8895 348 GSHDCTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTL----YMFASASPDN-IKQWKCPEG----------------- 403 (479)
Q Consensus 348 gs~d~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~----~~l~s~s~d~-i~~w~~~~~----------------- 403 (479)
++.|+.+.+|+...++. +..+.+|...|++++|+|++ .+|++++.|. |++||+.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 267 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD 267 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccC
Confidence 66666666666665544 66778899999999999998 7888888775 999998764
Q ss_pred -----------------------------eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 404 -----------------------------KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 404 -----------------------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+.+..+.+|...|++++|+|++ +|++|+.||.|++||+.++..++.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 5677889999999999999998 89999999999999999987665443
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.1e-35 Score=289.32 Aligned_cols=296 Identities=18% Similarity=0.239 Sum_probs=208.1
Q ss_pred eeecCCcccceEEEEEccC-CceEEEecCCCeEEEEeecccce--EeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895 26 IRHYHGHLSSVNTISLHPT-IDVLITAGRDSTARVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER 102 (479)
Q Consensus 26 ~~~~~gH~~~V~~l~~sp~-g~~laSgs~D~~vriWd~~t~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (479)
.+...+|...|+||+|||+ +++||||+.||+|+|||+.++.. ...+.+|.+.|.++.|.+.+.. .+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~----~l------- 180 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN----QF------- 180 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT----EE-------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC----EE-------
Confidence 3445689999999999995 67999999999999999987754 4556789999999999754321 11
Q ss_pred EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT 182 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (479)
.+...++++++|++.... . .
T Consensus 181 ---------------~s~s~D~~v~iwd~~~~~--------------~-----~-------------------------- 200 (435)
T 4e54_B 181 ---------------YASSMEGTTRLQDFKGNI--------------L-----R-------------------------- 200 (435)
T ss_dssp ---------------EEECSSSCEEEEETTSCE--------------E-----E--------------------------
T ss_pred ---------------EEEeCCCEEEEeeccCCc--------------e-----e--------------------------
Confidence 122345788888753210 0 0
Q ss_pred CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895 183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262 (479)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~ 262 (479)
.......+...+.+++|+|++++|++|+.|+.|++||++. +.+..+.+|..
T Consensus 201 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~ 251 (435)
T 4e54_B 201 ----------------------------VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK 251 (435)
T ss_dssp ----------------------------EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS
T ss_pred ----------------------------EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc
Confidence 0000012344567899999999999999999999999864 55667889999
Q ss_pred CEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy8895 263 SVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE 340 (479)
Q Consensus 263 ~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 340 (479)
.|.+++|+|++. ++++++.|+.|++||++..+..... ....+...|.+++|+|++.+++++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~----------------- 314 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT----------------- 314 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-----------------
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE-----------------
Confidence 999999999876 6778999999999999865543222 123466789999999988776554
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC------ceEEEEEeCCCcEEEEEc------------CC-cEEEEeCC
Q psy8895 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK------SVRSVALHPTLYMFASAS------------PD-NIKQWKCP 401 (479)
Q Consensus 341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~------~v~~i~~~~~~~~l~s~s------------~d-~i~~w~~~ 401 (479)
+.|++|++||+.+++....+..|.. .+....++|++.+++.+. ++ .|++||..
T Consensus 315 --------~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 315 --------DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp --------ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred --------cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 5555566666665555555444321 122334555544444332 23 38999999
Q ss_pred CCeEEeeec-CCcceEEEE-EEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895 402 EGKFIQNLP-GHNAIINSI-CVNNEG-VLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 402 ~~~~~~~~~-~h~~~v~~l-~~~~~~-~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
+++.+..+. +|...|.++ +|+|++ +|++|+ |++|+|||+++|...
T Consensus 387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999988765 677788887 699999 677765 889999999988653
No 52
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-33 Score=276.06 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=166.6
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP 296 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 296 (479)
|...+.++++ ++.++++|+.|+.+++||.... ..+..+.+|...+..+.++|++.++++++.|+.+++||....+..
T Consensus 188 h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 188 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred CCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 3344455554 4679999999999999999865 456788999999999999999999999999999999999765432
Q ss_pred cC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895 297 VQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374 (479)
Q Consensus 297 ~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~ 374 (479)
.. .....+...|.++.|.|.+..++. .++|+.|++|++||+.+++++..+..| ..
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la----------------------~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~ 322 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLA----------------------TGGGTSDRHIRIWNVCSGACLSAVDAH-SQ 322 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEE----------------------EEECTTTCEEEEEETTTTEEEEEEECS-SC
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEE----------------------EEeecCCCEEEEEeCCccccceeeccc-cc
Confidence 21 112345677889999886543321 235668999999999999999888755 57
Q ss_pred eEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895 375 VRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 375 v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~ 449 (479)
+.++.|+|++..+++++ .| .|++||..+++++..+.+|.+.|++++|+|++ +|+||+.|++|+|||+....+.++
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 88999999988776654 34 59999999999999999999999999999999 899999999999999987655443
No 53
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-33 Score=267.56 Aligned_cols=242 Identities=21% Similarity=0.295 Sum_probs=209.9
Q ss_pred ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w 288 (479)
.+..+.+.+|.+.|.+++|+|++++|+||+.|++|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35567899999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred ECCCCCccc----CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCeE
Q psy8895 289 DLEYNKAPV----QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHPV 345 (479)
Q Consensus 289 d~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~l 345 (479)
++....... ......+...+.++.|+|++..+++++.|++|++|+...... .....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 986432110 001123567799999999999999999999999999765421 124689
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC--cceEEEEEEc
Q psy8895 346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH--NAIINSICVN 422 (479)
Q Consensus 346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h--~~~v~~l~~~ 422 (479)
++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++++.|. +++||+.+++.+..+..+ ...+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9999999999999999999999999999999999999999999999885 999999988877666543 4578999999
Q ss_pred CCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 423 NEG-VLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 423 ~~~-~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
|++ +|++|+.|++|++||+.++..+..+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 998 8999999999999999999877654
No 54
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=262.75 Aligned_cols=224 Identities=19% Similarity=0.339 Sum_probs=187.4
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP 296 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 296 (479)
+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...+.++.+. +..+++++.++.+++|+.......
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~ 142 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 142 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCcee
Confidence 466779999999999999999999999999999999999999999988876654 568999999999999998765433
Q ss_pred cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC----------------------CCC--eEEEEeCCC
Q psy8895 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------------ESH--PVITGSHDC 352 (479)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----------------------~~~--~l~sgs~d~ 352 (479)
... ...+...+..+.+.+++..+++++.|++|++|+....... ... .+++++.++
T Consensus 143 ~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 143 VAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred EEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 221 1245677899999999999999999999999998653210 111 235677899
Q ss_pred cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895 353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV 428 (479)
Q Consensus 353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~ 428 (479)
+|++||.+........ .+...+..+.|+|++..+++++ .| .|++||..+++++..+.+|.+.|++++|+|++ +|+
T Consensus 222 ~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp EEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 9999999988776665 4667899999999887766543 44 59999999999999999999999999999999 899
Q ss_pred EEeCCCcEEEEecCCC
Q psy8895 429 SGADNGTMCFWDWRTG 444 (479)
Q Consensus 429 sg~~dg~i~lWd~~~~ 444 (479)
|||.||+|+|||+...
T Consensus 301 S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 301 SAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTEEEEECCSCC
T ss_pred EEecCCeEEEEECCCC
Confidence 9999999999998754
No 55
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.6e-34 Score=277.82 Aligned_cols=243 Identities=24% Similarity=0.362 Sum_probs=208.2
Q ss_pred cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC 287 (479)
Q Consensus 208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~ 287 (479)
.....+++.+|.+.|.+++|+|++++|+||+.|++|+|||+.+++....+.+|...|.+++|+|++.++++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCc-----ccCCCCCCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCC----------------------
Q psy8895 288 WDLEYNKA-----PVQPGSMDSESGIFSMTFDNS-GSRLITTEADKTVKLYKEDDSAT---------------------- 339 (479)
Q Consensus 288 wd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~---------------------- 339 (479)
||+..... ........+...+.++.|.|+ +..+++++.|++|++||......
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 99865321 111112345667888888886 45799999999999999764321
Q ss_pred -CCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCc---
Q psy8895 340 -EESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHN--- 413 (479)
Q Consensus 340 -~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~--- 413 (479)
.+...+++|+.|++|++||++ ..+.+..+.+|...|++++|+|++.+|++++.|. +++||..+++.+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 134679999999999999998 4577888999999999999999999999999885 9999999999888776543
Q ss_pred ----ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 414 ----AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 414 ----~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
..|.+++|+|++ +|++|+.||.|++||..+++.+..+
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 248999999999 8999999999999999998877655
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=271.50 Aligned_cols=313 Identities=18% Similarity=0.267 Sum_probs=218.0
Q ss_pred eecCCcccceEEEEEcc-CCceEEEecCCCeEEEEeecccceEeeec-------------ccccceEEEEecCCCCcccc
Q psy8895 27 RHYHGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRTKANVYTLT-------------GHTNTIASVVTQASEPQVGT 92 (479)
Q Consensus 27 ~~~~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~~ 92 (479)
..+.+|.++|++++|+| ++++||+|+.||+|++||+.+++....+. +|...|.++.|.+.+...
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 114 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM-- 114 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC--
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE--
Confidence 45678999999999999 99999999999999999999887655543 588889888887633210
Q ss_pred ceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccc
Q psy8895 93 KTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELV 172 (479)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (479)
++ +...++.+++|++...+
T Consensus 115 --l~----------------------s~~~d~~i~iwd~~~~~------------------------------------- 133 (408)
T 4a11_B 115 --FT----------------------SSSFDKTLKVWDTNTLQ------------------------------------- 133 (408)
T ss_dssp --EE----------------------EEETTSEEEEEETTTTE-------------------------------------
T ss_pred --EE----------------------EEeCCCeEEEeeCCCCc-------------------------------------
Confidence 11 11234566777643110
Q ss_pred cccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcC---CCcEEEEEeCCCeEEEEECC
Q psy8895 173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP---GNEWFATGSADKIIKVWDLA 249 (479)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~g~~l~sgs~d~~i~iWd~~ 249 (479)
....+ .+...+.++.++| ++.++++++.|+.|++||+.
T Consensus 134 --------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 134 --------------------------------------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp --------------------------------------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred --------------------------------------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 00011 2456678888877 45599999999999999999
Q ss_pred CCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC--------------CCCCCCCCCeEEEEEe
Q psy8895 250 TGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ--------------PGSMDSESGIFSMTFD 314 (479)
Q Consensus 250 ~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~--------------~~~~~~~~~i~~~~~~ 314 (479)
+++....+.+|...|.+++|+|+++ ++++++.|+.|++||++....... .....+...+.++.|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9999999999999999999999998 588999999999999976542111 0112456789999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCC----------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895 315 NSGSRLITTEADKTVKLYKEDDSAT----------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372 (479)
Q Consensus 315 ~~~~~l~~~~~d~~i~~~~~~~~~~----------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~ 372 (479)
|++..+++++.|+.+++|+...... .....++.++.|+.|++||+.+++++..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999999999999999999875431 112457788899999999999999999999999
Q ss_pred CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR 442 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~ 442 (479)
..|++++|+|++.+|++++.|+ |++|+..+++.+.....+... ..+....+..+.+.+.|+.+++|+..
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 9999999999999999998775 999999988876655443322 11121222356778899999999864
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=271.89 Aligned_cols=224 Identities=21% Similarity=0.265 Sum_probs=175.7
Q ss_pred ecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895 215 ISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW 288 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w 288 (479)
+.+|.+.|.+++|+++ +++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|+ +.++++++.|+.|++|
T Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~ 130 (379)
T 3jrp_A 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 130 (379)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence 3467888999999876 8999999999999999999987 67788889999999999999 9999999999999999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----e
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----S 364 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~ 364 (479)
|++............+...+.++.|+|........ .....+...+++|+.|+.|++||++.++ .
T Consensus 131 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp ECCTTSCCCEEEEECCTTCEEEEEECCCC----------------------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred ecCCCCceeeEEecCCCCceEEEEEcCcccccccc------------ccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 99866432221123456779999998853221110 0012234567888889999999987653 4
Q ss_pred EEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCe-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 365 LCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGK-----FIQNLPGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
...+.+|...|++++|+|+ +.+|++++.|. +++||..+++ .......|...|.+++|+|++ +|++++.||
T Consensus 199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 5677889999999999999 89999988775 9999998763 233344588999999999999 899999999
Q ss_pred cEEEEecCCCeEEEEE
Q psy8895 435 TMCFWDWRTGYNFQRL 450 (479)
Q Consensus 435 ~i~lWd~~~~~~~~~~ 450 (479)
.|++||+.++...+..
T Consensus 279 ~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 279 KVTLWKENLEGKWEPA 294 (379)
T ss_dssp SEEEEEEEETTEEEEE
T ss_pred cEEEEeCCCCCccccc
Confidence 9999999876554443
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-34 Score=280.63 Aligned_cols=303 Identities=15% Similarity=0.214 Sum_probs=219.8
Q ss_pred Eeeec-CCcccceEEEEEcc-CCceEEEecCCCeEEEEeecc---cc---eEeeecccccceEEEEecCCCCccccceEE
Q psy8895 25 VIRHY-HGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRT---KA---NVYTLTGHTNTIASVVTQASEPQVGTKTVL 96 (479)
Q Consensus 25 ~~~~~-~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t---~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 96 (479)
++.++ .+|.++|++++|+| ++++|||||.|++|+|||+.+ +. ...++ +|...|.++.|.++... +
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-----l- 126 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA-----F- 126 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE-----E-
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE-----E-
Confidence 45566 89999999999999 999999999999999999987 43 22233 58999999998764321 1
Q ss_pred eccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccc
Q psy8895 97 LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE 176 (479)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (479)
.+...++.+++|++........ ....... .+.
T Consensus 127 ---------------------~s~s~dg~i~vwd~~~~~~~~~----------~~~~~~~--------~i~--------- 158 (437)
T 3gre_A 127 ---------------------AVSSKDGQIIVLKVNHYQQESE----------VKFLNCE--------CIR--------- 158 (437)
T ss_dssp ---------------------EEEETTSEEEEEEEEEEEETTE----------EEEEEEE--------EEE---------
T ss_pred ---------------------EEEeCCCEEEEEEeccccCCce----------eeccccc--------eeE---------
Confidence 1223457788887632100000 0000000 000
Q ss_pred cccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecC--CCccEEEEE--EcCCCcEEEEEeCCCeEEEEECCCCc
Q psy8895 177 NQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISG--HLGWVRCVA--VEPGNEWFATGSADKIIKVWDLATGK 252 (479)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~--~~~~g~~l~sgs~d~~i~iWd~~~~~ 252 (479)
...+.. +...+.++. +++++++|++|+.|+.|++||+++++
T Consensus 159 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 159 -----------------------------------KINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp -----------------------------------EEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred -----------------------------------EEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 000111 456677777 66899999999999999999999999
Q ss_pred eEEEEec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895 253 LKLSLTG--HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330 (479)
Q Consensus 253 ~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 330 (479)
.+..+.+ |...|.+++|+|++.++++|+.|+.|++||++..+..... ...+...|.++.+.|...
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~s------------ 270 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW-SFGDHAPITHVEVCQFYG------------ 270 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-BCTTCEEEEEEEECTTTC------------
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE-ecCCCCceEEEEeccccC------------
Confidence 9999988 8899999999999999999999999999999876543321 113445677886665311
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--------------------------CCCceEEEEEeCCC
Q psy8895 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--------------------------HKKSVRSVALHPTL 384 (479)
Q Consensus 331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--------------------------h~~~v~~i~~~~~~ 384 (479)
.+...+++|+.|++|++||+++++.+..+.+ |...|++++|+ ++
T Consensus 271 ---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 271 ---------KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp ---------TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred ---------CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 1123466777777777777777776666653 55568899999 66
Q ss_pred cEEEEEcCC-cEEEEeCCCCeEEeeecC-------------------------------------CcceEEEEEEcCC--
Q psy8895 385 YMFASASPD-NIKQWKCPEGKFIQNLPG-------------------------------------HNAIINSICVNNE-- 424 (479)
Q Consensus 385 ~~l~s~s~d-~i~~w~~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~-- 424 (479)
.+|++++.| .|++||+.+++....+.+ |...|+++++.++
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 788888866 599999999887766665 8889999999876
Q ss_pred C-EEEEEeCCCcEEEEe
Q psy8895 425 G-VLVSGADNGTMCFWD 440 (479)
Q Consensus 425 ~-~l~sg~~dg~i~lWd 440 (479)
+ +|++|+.||.|+||+
T Consensus 421 ~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SEEEEEEETTSCEEEEC
T ss_pred ceEEEEEcCCceEEEeC
Confidence 5 899999999999995
No 59
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=269.16 Aligned_cols=222 Identities=18% Similarity=0.276 Sum_probs=185.0
Q ss_pred cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEE--cCCCCEEEEEECCCcEEEEECCCC
Q psy8895 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV--SPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
.+|.+.|.+++|+|++++|++++.|+.|++||+.+++... +.+|...|.+++| ++++.++++++.|+.|++||+++.
T Consensus 83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 3577889999999999999999999999999999988765 5679999999999 899999999999999999999876
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-------------------CC----CeEEEEeC
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-------------------ES----HPVITGSH 350 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-------------------~~----~~l~sgs~ 350 (479)
+..... .....+.++.+.+ ..+++++.++.+.+|+....... .. ..+++++.
T Consensus 162 ~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVL---QLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEE---ECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEE---ecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 544322 2233566666554 58889999999999998653210 01 12899999
Q ss_pred CCcEEEEECCCC---eeEEEEccCCC------------ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc
Q psy8895 351 DCTIRLWDLAAG---KSLCTLTNHKK------------SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNA 414 (479)
Q Consensus 351 d~~v~iwd~~~~---~~~~~~~~h~~------------~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~ 414 (479)
|+.|++||++.. +.+..+..|.. .|++++|+|++.+|++++.|. |++||..+++++..+.+|..
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ 316 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence 999999999987 56777878776 799999999999898888775 99999999999999999999
Q ss_pred eEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895 415 IINSICVNNEG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~ 443 (479)
.|.+++|+|++ +|++++.|+..+.|++.+
T Consensus 317 ~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 317 PISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999 899999998766555443
No 60
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-32 Score=262.66 Aligned_cols=263 Identities=23% Similarity=0.393 Sum_probs=213.8
Q ss_pred ceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc-----eEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGK-----LKLSLTGHVGSVRGLTVSPRHPYLFSCGDD 282 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 282 (479)
..+..+|.||.+.|++++|+|+ +++|+|||.|++|+|||+.+.+ +...+.+|...|.+++|+|+++++++++.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 3556689999999999999997 6899999999999999987653 456789999999999999999999999999
Q ss_pred CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CCC
Q psy8895 283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------EES 342 (479)
Q Consensus 283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~ 342 (479)
+.|++|+.......... ......+....+.+.+..+++++.|+.+++|+...... ...
T Consensus 108 ~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccceEEeecccceeeee--cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999998765443222 23445678888999999999999999999998754210 123
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICV 421 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~ 421 (479)
..+++++.|++|++||+++++.+..+.+|...|++++|+|++.+|++++.|. +++||..+.+.+..+.++ ..|.++++
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 264 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF 264 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence 4578999999999999999999999999999999999999999999998875 999999999998888765 47899999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEeEecC-CCCCceEEeeehhhhcc
Q psy8895 422 NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG-FPKPSVFFFFLAFSYLN 474 (479)
Q Consensus 422 ~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 474 (479)
+|++.+++++.|+.|++||++++..+..++...... .......+.+++|++-+
T Consensus 265 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 999988888899999999999998887765433211 11112234555655543
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-32 Score=255.98 Aligned_cols=242 Identities=27% Similarity=0.488 Sum_probs=208.4
Q ss_pred cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC 287 (479)
Q Consensus 208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~ 287 (479)
.+.....+.+|.+.|.+++|+|++++|++|+.|+.|++|++.+++....+.+|...|.+++|+|+++++++++.|+.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeC
Q psy8895 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSH 350 (479)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~ 350 (479)
||+++.+..... ..+...+.++.|+|++..+++++.|+.|++|+...... ++...+++++.
T Consensus 92 wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999876654322 24567899999999999999999999999999875421 23567999999
Q ss_pred CCcEEEEECCCCeeEEEEc-cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE---EEEcCCC
Q psy8895 351 DCTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS---ICVNNEG 425 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~---l~~~~~~ 425 (479)
|+.|++||+++++.+..+. .+...+..++|+|++.++++++.|+ |++||..+++.+..+.+|...+.+ ....+++
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 9999999999998888764 4567899999999999999888775 999999999999999888754322 2233555
Q ss_pred -EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 426 -VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 426 -~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+|++|+.||.|++||+++++.++.++
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhh
Confidence 89999999999999999998887764
No 62
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=267.75 Aligned_cols=245 Identities=16% Similarity=0.222 Sum_probs=189.7
Q ss_pred CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEee----ecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYT----LTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV 106 (479)
Q Consensus 31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (479)
.|.++|++++|+|++ .|++|+.||+|||||+++++.+.. +.+|.+.|.++.|+++...
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~----------------- 141 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ----------------- 141 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-----------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-----------------
Confidence 456789999999985 688999999999999999876544 3489999999999876432
Q ss_pred ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895 107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN 186 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (479)
+.+...++++++|++...
T Consensus 142 ----------l~sgs~d~~i~iwd~~~~---------------------------------------------------- 159 (344)
T 4gqb_B 142 ----------AVSGSKDICIKVWDLAQQ---------------------------------------------------- 159 (344)
T ss_dssp ----------EEEEETTSCEEEEETTTT----------------------------------------------------
T ss_pred ----------EEEEeCCCeEEEEECCCC----------------------------------------------------
Confidence 112234567888865310
Q ss_pred hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEe--cCCcC
Q psy8895 187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLT--GHVGS 263 (479)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~ 263 (479)
+....+.+|.+.|.+++|+|++ .+|++++.|++|++||+++++....+. .|...
T Consensus 160 -----------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 216 (344)
T 4gqb_B 160 -----------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL 216 (344)
T ss_dssp -----------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC
T ss_pred -----------------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc
Confidence 1223567899999999999988 478999999999999999998877764 45567
Q ss_pred EEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895 264 VRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES 342 (479)
Q Consensus 264 v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 342 (479)
+.+++|+|+ +.++++|+.|++|++||+++.+..... ..+...|.+++|+|++..
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~g~~----------------------- 271 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPHSVP----------------------- 271 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--ECCSSCEEEEEECSSSSC-----------------------
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCe-----------------------
Confidence 999999985 567889999999999999877655432 346678999999987532
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeE
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKF 405 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~ 405 (479)
+|++|+.|++|++||+++++.+ .+.+|.+.|++++|+|++. +|++++.| .|++|++.+...
T Consensus 272 -~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 272 -FLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp -CEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred -EEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 3578888999999999887654 5689999999999999874 77888766 599999976543
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=264.35 Aligned_cols=236 Identities=23% Similarity=0.307 Sum_probs=197.0
Q ss_pred ceeEEEecCCCc-cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE---EEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895 209 WKLYRVISGHLG-WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL---SLTGHVGSVRGLTVSPRHPYLFSCGDDRT 284 (479)
Q Consensus 209 ~~~~~~~~~h~~-~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 284 (479)
..+...+.+|.+ .|.+++|+|+|++|++|+.|++|+|||+.++.... ...+|...|.+++|+|++.+|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 345677889988 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--------------------CCCCCe
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------TEESHP 344 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------~~~~~~ 344 (479)
+++||++............+...|.+++|+|+++.+++++.|++|++|+..... .++...
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 999998765321111123467789999999999999999999999999976431 123567
Q ss_pred EEEEeCCCcEEEEECCCCe--eEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC---------------CeEE
Q psy8895 345 VITGSHDCTIRLWDLAAGK--SLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE---------------GKFI 406 (479)
Q Consensus 345 l~sgs~d~~v~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~---------------~~~~ 406 (479)
+++|+.|++|++||++.++ +..++.+|...|++++|+|++.+|++++.|. |++|+... .+++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999998875 4568889999999999999999999998885 99998522 1234
Q ss_pred eeecC-CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 407 QNLPG-HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 407 ~~~~~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
..+.+ |...|.++++++++ .|++++.|+.|++|+..++
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 45555 88899999999988 8999999999999998765
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=290.95 Aligned_cols=227 Identities=9% Similarity=0.016 Sum_probs=166.7
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEecCCcCEEEE--EEcCCC-CEEEEEECCCcEEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLTGHVGSVRGL--TVSPRH-PYLFSCGDDRTVKCWD 289 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~~h~~~v~~v--~~~~~~-~~l~s~~~d~~i~~wd 289 (479)
.+.+|.+.|.+++|+++ ..|++|+.||+|++||++++. ....+.+|...|.++ +|+|++ .+|+|+|.|++|++||
T Consensus 261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 261 TLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp EECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred EEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 56789999999999986 489999999999999999774 445688999999999 578887 8999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCC
Q psy8895 290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDC 352 (479)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~ 352 (479)
+++.+.............+.+++|+|++..+++++.|++|++|+...... +....+++|+.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 97654432111011112467899999999999999999999999765431 3456789999999
Q ss_pred cEEEEECCCCeeEEEEcc-----CCCceEEEEEeCCCcEEEEEcCCcEEEEeCC-CCeEEeeecCCcceEEEEEEcCCC-
Q psy8895 353 TIRLWDLAAGKSLCTLTN-----HKKSVRSVALHPTLYMFASASPDNIKQWKCP-EGKFIQNLPGHNAIINSICVNNEG- 425 (479)
Q Consensus 353 ~v~iwd~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~-~~~~~~~~~~h~~~v~~l~~~~~~- 425 (479)
+|++||+... .+..++. +...|.+++|+|++..+.. .+.+.+|+.. ++..+..+.+|...|++++|+|++
T Consensus 420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCSCCCEEECCSTT
T ss_pred EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 9999998653 2222211 1125789999999986633 3334444432 567788899999999999999984
Q ss_pred ---EEEEEeCCCcEEEEecCCC
Q psy8895 426 ---VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 426 ---~l~sg~~dg~i~lWd~~~~ 444 (479)
++|+|+.||.||||+++-.
T Consensus 497 ~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 497 GGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TTTEEEEECTTSEEEEEECSCC
T ss_pred ccHHHHhhccCceEEEEEcccc
Confidence 7999999999999998743
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-32 Score=259.58 Aligned_cols=235 Identities=22% Similarity=0.321 Sum_probs=191.2
Q ss_pred ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEE-ec-CCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSL-TG-HVGSVRGLTVSPRHPYLFSCGDDRT 284 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~-~~-h~~~v~~v~~~~~~~~l~s~~~d~~ 284 (479)
.+....+.+|.+.|.+++|+|+ +|++|+.|++|++||+.++ .....+ .+ |...|.+++|+|++.+|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3456788999999999999987 9999999999999999875 344555 44 9999999999999999999999999
Q ss_pred EEEEECCCCCcc-----cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------
Q psy8895 285 VKCWDLEYNKAP-----VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------- 338 (479)
Q Consensus 285 i~~wd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------- 338 (479)
|++||++..... .......+...|.+++|+|+++++++++.|++|++|+.....
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999998532110 001113466789999999999999999999999999984211
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCC--eeEEEEccCCCceEEEEEeCC--CcEEEEEcCC-cEEEEeCCCC--------eE
Q psy8895 339 TEESHPVITGSHDCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPT--LYMFASASPD-NIKQWKCPEG--------KF 405 (479)
Q Consensus 339 ~~~~~~l~sgs~d~~v~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d-~i~~w~~~~~--------~~ 405 (479)
.++...+++|+.|++|++||...+ +++..+.+|...|.+++|+|+ +..+++++.| .|++|++.++ ..
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 123467999999999999999876 678889999999999999998 6788888877 4999998654 34
Q ss_pred EeeecC-CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895 406 IQNLPG-HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 406 ~~~~~~-h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~ 445 (479)
...+.+ |...|.++++++++.|++++.||+|++||..+++
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred eeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence 455655 9999999999988899999999999999998874
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-32 Score=268.71 Aligned_cols=290 Identities=20% Similarity=0.317 Sum_probs=225.6
Q ss_pred cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecc-cccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTG-HTNTIASVVTQASEPQVGTKTVLLESCERIMFVL 107 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (479)
..+|.+.+.+.++++++..+++++.|++|++||+.+++....+.. |...|.++.|.++... ++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~---------------l~- 150 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSF---------------LS- 150 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSE---------------EE-
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCE---------------EE-
Confidence 457877765555555557799999999999999999998887775 8888999998765321 11
Q ss_pred cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895 108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT 187 (479)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (479)
....++.+++|+....
T Consensus 151 -----------~~~~dg~i~iwd~~~~----------------------------------------------------- 166 (401)
T 4aez_A 151 -----------VGLGNGLVDIYDVESQ----------------------------------------------------- 166 (401)
T ss_dssp -----------EEETTSCEEEEETTTC-----------------------------------------------------
T ss_pred -----------EECCCCeEEEEECcCC-----------------------------------------------------
Confidence 1123456666654210
Q ss_pred hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEEecCCcCEEE
Q psy8895 188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA-TGKLKLSLTGHVGSVRG 266 (479)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~-~~~~~~~~~~h~~~v~~ 266 (479)
+....+.+|...|.+++|+ ++++++|+.|+.|++||++ .+.....+.+|...|.+
T Consensus 167 ----------------------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 167 ----------------------TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp ----------------------CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ----------------------eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence 1123456799999999994 6799999999999999998 55677889999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI 346 (479)
Q Consensus 267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~ 346 (479)
++|+|++.++++++.|+.|++||+++.+..... ..+...+.++.|+|++..+ ++
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l------------------------l~ 276 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNL------------------------LA 276 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEE--CCCSSCCCEEEECTTSTTE------------------------EE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe--cCCcceEEEEEECCCCCCE------------------------EE
Confidence 999999999999999999999999876544322 2356678899999875433 34
Q ss_pred EEe--CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEE--eeecCCcceEEEE
Q psy8895 347 TGS--HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFI--QNLPGHNAIINSI 419 (479)
Q Consensus 347 sgs--~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~--~~~~~h~~~v~~l 419 (479)
+|+ .|+.|++||+.+++++..+. +...|.+++|+|++..+++++ .+ .+++|+..+++.. ..+.+|...|.++
T Consensus 277 ~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~ 355 (401)
T 4aez_A 277 TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS 355 (401)
T ss_dssp EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence 443 78999999999999888885 667899999999999988843 44 5999999887654 4477999999999
Q ss_pred EEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895 420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~ 449 (479)
+++|++ +|++++.||.|++||+.+++.+++
T Consensus 356 ~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 356 ALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 999999 899999999999999999877654
No 67
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-32 Score=261.69 Aligned_cols=235 Identities=19% Similarity=0.324 Sum_probs=194.8
Q ss_pred eeEEEecCCCccEEEEEE-----cC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCCCEE
Q psy8895 210 KLYRVISGHLGWVRCVAV-----EP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRHPYL 276 (479)
Q Consensus 210 ~~~~~~~~h~~~v~~~~~-----~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~l 276 (479)
....++.+|.+.|.+++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 445678999999999999 76 8999999999999999998753 3566789999999999999999999
Q ss_pred EEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------C--------
Q psy8895 277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------T-------- 339 (479)
Q Consensus 277 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------~-------- 339 (479)
++++.|++|++||+++++..... ..+...|.+++|+|++..+++++.|++|++|+..... .
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEE--ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEE--cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence 99999999999999876654322 3467789999999999999999999999999974210 0
Q ss_pred --CC----------CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC-eE
Q psy8895 340 --EE----------SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG-KF 405 (479)
Q Consensus 340 --~~----------~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~-~~ 405 (479)
+. ...+++++.|++|++|| ...+....+.+|...|++++|+|++.+|++++.|. |++||+.+. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 01 15789999999999999 45677788899999999999999999999998875 999998443 33
Q ss_pred EeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895 406 IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448 (479)
Q Consensus 406 ~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~ 448 (479)
...+ .+...|.+++|+|++.+++++.|+.|++||+.++....
T Consensus 249 ~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 249 QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence 3333 34556999999999966667778999999999876543
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-32 Score=264.94 Aligned_cols=232 Identities=27% Similarity=0.485 Sum_probs=198.6
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc------------------CEEEEEEcCCCCEEEE
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG------------------SVRGLTVSPRHPYLFS 278 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~------------------~v~~v~~~~~~~~l~s 278 (479)
+|.+.|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|+++++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 78999999999998887766542 3899999999999999
Q ss_pred EECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------C-C
Q psy8895 279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------E-E 341 (479)
Q Consensus 279 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~-~ 341 (479)
|+.|+.|++||+++.+..... ..+...|.++.|+|++..+++++.|+++++|+...... + +
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcEEEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 999999999999876544322 34667899999999999999999999999999865321 1 4
Q ss_pred CCeEEEEeCCCcEEEEECCCCeeEEEE-------ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC----------
Q psy8895 342 SHPVITGSHDCTIRLWDLAAGKSLCTL-------TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG---------- 403 (479)
Q Consensus 342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~---------- 403 (479)
...+++|+.|++|++||+++++.+..+ .+|...|++++|+|++.++++++.|+ |++||+.+.
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 568999999999999999999887776 57899999999999999999998775 999998653
Q ss_pred --eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 404 --KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 404 --~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.+...+.+|...|.++++++++ +|++|+.|+.|++||.+++.++..++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 3456778999999999999988 89999999999999999998887664
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-32 Score=292.80 Aligned_cols=342 Identities=21% Similarity=0.340 Sum_probs=260.1
Q ss_pred ceEEEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEe
Q psy8895 8 KLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61 (479)
Q Consensus 8 ~~~~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd 61 (479)
+++++|.+|.+.|+++. .+..+.+|.++|++++|+|++++||+|+.||+|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34567788888777764 3556778999999999999999999999999999999
Q ss_pred ecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccc
Q psy8895 62 VRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLN 141 (479)
Q Consensus 62 ~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 141 (479)
+.+++.+.++.+|.+.+.++.|.++.+. ++ ....++.+++|++...
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~----------------------~~~~dg~i~vw~~~~~------- 129 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY-----VL----------------------SGSDDLTVKLWNWENN------- 129 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSE-----EE----------------------EEETTSEEEEEEGGGT-------
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCE-----EE----------------------EEcCCCEEEEEECCCC-------
Confidence 9999999999999999999999876432 11 1123456777764310
Q ss_pred hhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCcc
Q psy8895 142 LQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW 221 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 221 (479)
......+.+|...
T Consensus 130 -------------------------------------------------------------------~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 130 -------------------------------------------------------------------WALEQTFEGHEHF 142 (814)
T ss_dssp -------------------------------------------------------------------SEEEEEEECCSSC
T ss_pred -------------------------------------------------------------------ceEEEEEcCCCCc
Confidence 0112345678999
Q ss_pred EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
|.+++|+| +++.|++++.|+.|++||+.++.....+..+. ..+.+++|+| ++.++++++.|+.|++||+++.+...
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 99999999 88999999999999999999888777776665 7899999999 99999999999999999998765443
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCC-CeEEEEeCCCcEEEEEC
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EES-HPVITGSHDCTIRLWDL 359 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~-~~l~sgs~d~~v~iwd~ 359 (479)
.. ..+...+.++.|+|++..+++++.|+.|++|+...... +.. ..+++.+.|+.+.+|++
T Consensus 223 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 223 TL--EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EE--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 22 23567899999999999999999999999999875321 122 22355556777888887
Q ss_pred CCCeeEEE-------------------------------------------EccCCCceEEEEEeCCCcEEEEEcCCcEE
Q psy8895 360 AAGKSLCT-------------------------------------------LTNHKKSVRSVALHPTLYMFASASPDNIK 396 (479)
Q Consensus 360 ~~~~~~~~-------------------------------------------~~~h~~~v~~i~~~~~~~~l~s~s~d~i~ 396 (479)
....+... +..+...+++++|+|++.++++++++.+.
T Consensus 301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~ 380 (814)
T 3mkq_A 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYV 380 (814)
T ss_dssp SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEE
T ss_pred CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEE
Confidence 64322111 12344567899999999999999987899
Q ss_pred EEeCCCCeEE-----------------------------eeecCCcceEEEEEEcCCC----EEEEEeCCCcEEEEecCC
Q psy8895 397 QWKCPEGKFI-----------------------------QNLPGHNAIINSICVNNEG----VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 397 ~w~~~~~~~~-----------------------------~~~~~h~~~v~~l~~~~~~----~l~sg~~dg~i~lWd~~~ 443 (479)
+|+....... ..+.+|...+.+++++|++ .|++++.|++|++||+.+
T Consensus 381 i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 381 IYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp EEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT
T ss_pred EEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc
Confidence 9986533211 1223455566677778886 788888888888888888
Q ss_pred CeEEEEEEE
Q psy8895 444 GYNFQRLQV 452 (479)
Q Consensus 444 ~~~~~~~~~ 452 (479)
++.+..++.
T Consensus 461 ~~~~~~~~~ 469 (814)
T 3mkq_A 461 GTLVRRIDV 469 (814)
T ss_dssp CCEEEEESS
T ss_pred CcEEEEEec
Confidence 877766543
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.3e-32 Score=258.22 Aligned_cols=281 Identities=12% Similarity=0.101 Sum_probs=216.8
Q ss_pred eecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc---eEeeecccccceEEEEecCCCC-ccccceEEeccccE
Q psy8895 27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA---NVYTLTGHTNTIASVVTQASEP-QVGTKTVLLESCER 102 (479)
Q Consensus 27 ~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~---~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 102 (479)
....+|.+.|.+++|+|++++|++|+.|++|+|||+.+++ ....+.+|...+.++.|.++.. . ++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~------ 73 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ-----IY------ 73 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE-----EE------
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcE-----EE------
Confidence 3456899999999999999999999999999999999887 3455668999999998865432 1 11
Q ss_pred EEEeecccCceeeecccccccccccchhh-hhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895 103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQL-QIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 181 (479)
....++.+++|++ ...
T Consensus 74 ----------------~~~~dg~i~~wd~~~~~----------------------------------------------- 90 (342)
T 1yfq_A 74 ----------------VGTVQGEILKVDLIGSP----------------------------------------------- 90 (342)
T ss_dssp ----------------EEETTSCEEEECSSSSS-----------------------------------------------
T ss_pred ----------------EEcCCCeEEEEEeccCC-----------------------------------------------
Confidence 1123356666654 210
Q ss_pred CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecC--CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC---------
Q psy8895 182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISG--HLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--------- 250 (479)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--------- 250 (479)
....+.+ |...|.+++|+| ++++++++.|+.|++||+++
T Consensus 91 -----------------------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 91 -----------------------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp -----------------------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred -----------------------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 0013446 889999999999 99999999999999999987
Q ss_pred CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCe
Q psy8895 251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKT 328 (479)
Q Consensus 251 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 328 (479)
++.+..+. |...|.+++|+|++ +++++.|+.|++||++. ...........+...+.++.|+| ++..+++++.+
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-- 215 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID-- 215 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT--
T ss_pred CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC--
Confidence 66655555 88899999999987 88999999999999987 44322212234556789999999 87776655554
Q ss_pred EEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC------eeEEEEccCCC---------ceEEEEEeCCCcEEEEEcCC
Q psy8895 329 VKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG------KSLCTLTNHKK---------SVRSVALHPTLYMFASASPD 393 (479)
Q Consensus 329 i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~------~~~~~~~~h~~---------~v~~i~~~~~~~~l~s~s~d 393 (479)
+.|++||++.. +....+..|.. .|++++|+|++.+|++++.|
T Consensus 216 -----------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 216 -----------------------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp -----------------------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred -----------------------CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 55555555444 55556666644 99999999999988888877
Q ss_pred -cEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCCCc-EEEEec
Q psy8895 394 -NIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADNGT-MCFWDW 441 (479)
Q Consensus 394 -~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~dg~-i~lWd~ 441 (479)
.|++||..+++.+..+.+| ...|.+++ +++ +|++++.||+ .+.|..
T Consensus 273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 5999999999999999998 99999999 666 9999999999 665553
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.6e-32 Score=267.05 Aligned_cols=278 Identities=25% Similarity=0.387 Sum_probs=216.7
Q ss_pred cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeec
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLG 108 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (479)
..+|..+|.++++ ++++|++|+.||+|++||+.+++.+.++.+|...|.++.+.. . .
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~-----~-------------- 185 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R-----V-------------- 185 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S-----E--------------
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC--C-----E--------------
Confidence 3567788998877 789999999999999999999999999999999999988721 1 1
Q ss_pred ccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchh
Q psy8895 109 TAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ 188 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (479)
+.+...++.+++|+....
T Consensus 186 --------l~sg~~dg~i~vwd~~~~------------------------------------------------------ 203 (435)
T 1p22_A 186 --------IITGSSDSTVRVWDVNTG------------------------------------------------------ 203 (435)
T ss_dssp --------EEEEETTSCEEEEESSSC------------------------------------------------------
T ss_pred --------EEEEcCCCeEEEEECCCC------------------------------------------------------
Confidence 112234567777764210
Q ss_pred HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE---EEEecCCcCEE
Q psy8895 189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK---LSLTGHVGSVR 265 (479)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~---~~~~~h~~~v~ 265 (479)
+....+.+|.+.|.+++|+ ++++++|+.|+.|++||+.++... ..+.+|...|.
T Consensus 204 ---------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 204 ---------------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp ---------------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred ---------------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 1123456789999999997 469999999999999999987654 67889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE
Q psy8895 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV 345 (479)
Q Consensus 266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l 345 (479)
++++ ++.++++++.|+.|++||+++.+..... ..+...+.++.++ ...+
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~---------------------------~~~l 309 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYR---------------------------DRLV 309 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEE---------------------------TTEE
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE--cCCCCcEEEEEeC---------------------------CCEE
Confidence 9999 6779999999999999999876543322 1234456666553 1347
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------EEeeecCCcce
Q psy8895 346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK---------FIQNLPGHNAI 415 (479)
Q Consensus 346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~---------~~~~~~~h~~~ 415 (479)
++|+.|++|++||+++++++.++.+|...|+++++ ++.++++++.| .|++||..+++ .+..+.+|.+.
T Consensus 310 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~ 387 (435)
T 1p22_A 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387 (435)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred EEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence 88899999999999999999999999999999998 56778887766 59999986655 78889999999
Q ss_pred EEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895 416 INSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448 (479)
Q Consensus 416 v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~ 448 (479)
|.++++ .+..|++|+.||+|++||+.++...+
T Consensus 388 v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 388 VFRLQF-DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CCCEEE-CSSCEEECCSSSEEEEEC--------
T ss_pred eEEEEe-CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 999999 34489999999999999998875543
No 72
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-32 Score=264.66 Aligned_cols=263 Identities=11% Similarity=0.124 Sum_probs=204.5
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT 109 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (479)
+.-...|.+|+|+|||+++||+|.|++|| |..+++ ++.+|...+..+.|++++.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~--------------------- 65 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEF--------------------- 65 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCC---------------------
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCC---------------------
Confidence 34457899999999999999999999999 766664 4479999999999876530
Q ss_pred cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895 110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI 189 (479)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (479)
++.++.|+... ..
T Consensus 66 -------------~~~~~~~~~~~-------------------------------------------~~----------- 78 (588)
T 2j04_A 66 -------------ENKLDFELAQQ-------------------------------------------NG----------- 78 (588)
T ss_dssp -------------CCTTTTSCCCS-------------------------------------------SC-----------
T ss_pred -------------cceEEEEeCCC-------------------------------------------ce-----------
Confidence 11222221100 00
Q ss_pred HHHHhHhcCCCCCCCCCCcceeEEEe-cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc-----C
Q psy8895 190 IQQAKAKALPMPKPQWHAPWKLYRVI-SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG-----S 263 (479)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~-----~ 263 (479)
.+ .+|...|.+++|+|+|++||+++.||.|++||.++ +...+. |.. .
T Consensus 79 ------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 79 ------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 00 13567899999999999999999999999999654 555666 665 4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--c-------cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895 264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA--P-------VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE 334 (479)
Q Consensus 264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~ 334 (479)
+.+++|||||++|++|+.||+|++||+..+.. + ......++...|.+++|+|++ ++
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La------------- 196 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV------------- 196 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE-------------
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EE-------------
Confidence 99999999999999999999999999987642 0 111123456789999999986 43
Q ss_pred CCCCCCCCCeEEEEeCCCcEEEEECCCCe---eEEEE-ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895 335 DDSATEESHPVITGSHDCTIRLWDLAAGK---SLCTL-TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP 410 (479)
Q Consensus 335 ~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~ 410 (479)
+++.|++|++||+..++ ...++ .+|...|.+++|+ +..+++++++.|++||..+++......
T Consensus 197 ------------ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~ 262 (588)
T 2j04_A 197 ------------AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT 262 (588)
T ss_dssp ------------EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred ------------EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc
Confidence 45567777788877665 23566 4788999999999 588888887789999999888755455
Q ss_pred CCcceEEEEEE--cCCC-EEEEEeCCCcEEEEecC
Q psy8895 411 GHNAIINSICV--NNEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 411 ~h~~~v~~l~~--~~~~-~l~sg~~dg~i~lWd~~ 442 (479)
+|.+.|+.+.+ +|++ .|+++++||+ ++|..+
T Consensus 263 gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 263 GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 89999999999 9999 8999999999 999986
No 73
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.6e-32 Score=260.17 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=188.6
Q ss_pred cCCCccEEEEEEcCCCcEEEEEeC------CCeEEEEECCCCce----EEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895 216 SGHLGWVRCVAVEPGNEWFATGSA------DKIIKVWDLATGKL----KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285 (479)
Q Consensus 216 ~~h~~~v~~~~~~~~g~~l~sgs~------d~~i~iWd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 285 (479)
.+|.+.|.+++|+|||++|++||. |+.|++|+..++.. .....+|...|.+++|+|++. +++++.|++|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 78899999877643 234567888999999999985 5678899999
Q ss_pred EEEECCCCCcccCC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CC-CCeE
Q psy8895 286 KCWDLEYNKAPVQP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EE-SHPV 345 (479)
Q Consensus 286 ~~wd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~-~~~l 345 (479)
++||+.+++..... ....+...|.+++|+|+++++++++.|++|++|+...... .. ...+
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 99999876543221 1235677899999999999999999999999999865321 12 2468
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895 346 ITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICV 421 (479)
Q Consensus 346 ~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~ 421 (479)
++++.|++|++||+++++++..+. .|...+++++|+|+ +.+|++++.| .|++||+.+++.+..+.+|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 999999999999999988766543 56778999999997 5688888776 5999999999999999999999999999
Q ss_pred cCCC--EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 422 NNEG--VLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 422 ~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
+|++ +|++|+.|++|+|||+++++.++.+
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 9876 6999999999999999999877543
No 74
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.8e-31 Score=249.10 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=169.1
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--CceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--GKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWD 289 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd 289 (479)
++.+|.+.|.+++|+|+|++|++|+.|++|+|||+.. ++.+..+.+|.++|.+++|+++ +.+|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5679999999999999999999999999999999974 3667889999999999999864 88999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe--eE
Q psy8895 290 LEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK--SL 365 (479)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~--~~ 365 (479)
+++++.........+...|.++.|+|+ +.. +++|+.|++|++||++.+. ..
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~-------------------------l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPM-------------------------LLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSE-------------------------EEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcE-------------------------EEEEECCCcEEEEEecCCCceee
Confidence 986532111111235677999999886 444 4566667777777776542 23
Q ss_pred EEEccCCCceEEEEEeCC-------------CcEEEEEcCCc-EEEEeCCCCe----EEeeecCCcceEEEEEEcCC---
Q psy8895 366 CTLTNHKKSVRSVALHPT-------------LYMFASASPDN-IKQWKCPEGK----FIQNLPGHNAIINSICVNNE--- 424 (479)
Q Consensus 366 ~~~~~h~~~v~~i~~~~~-------------~~~l~s~s~d~-i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~--- 424 (479)
..+.+|...|.+++|+|+ +.+|++++.|. |++||..+++ ....+.+|...|.+++|+|+
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 566789999999999997 46888888775 9999987765 56789999999999999997
Q ss_pred C-EEEEEeCCCcEEEEecCCC
Q psy8895 425 G-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 425 ~-~l~sg~~dg~i~lWd~~~~ 444 (479)
+ +|++++.|++|+|||++++
T Consensus 219 ~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SEEEEEEETTSCEEEEEESST
T ss_pred ceEEEEEECCCcEEEEEeCCC
Confidence 3 8999999999999999875
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-30 Score=248.57 Aligned_cols=266 Identities=20% Similarity=0.283 Sum_probs=215.9
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEe---eec--ccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVY---TLT--GHTNTIASVVTQASEPQVGTKTVLLESCERIM 104 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~---~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (479)
.+|.++|.+++|+|++++|++++ |++|++||+.+++... .+. +|...+.++.|.++... ++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~-------- 113 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-----LI-------- 113 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE-----EE--------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE-----EE--------
Confidence 48999999999999999999999 9999999998876433 333 78888999988765321 11
Q ss_pred EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895 105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA 184 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (479)
....++.+++|+....+
T Consensus 114 --------------~~~~d~~i~~~d~~~~~------------------------------------------------- 130 (337)
T 1gxr_A 114 --------------VGGEASTLSIWDLAAPT------------------------------------------------- 130 (337)
T ss_dssp --------------EEESSSEEEEEECCCC--------------------------------------------------
T ss_pred --------------EEcCCCcEEEEECCCCC-------------------------------------------------
Confidence 11123456666532100
Q ss_pred CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895 185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264 (479)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v 264 (479)
......+.+|...|.+++|+|+++++++++.|+.|++||+++++....+.+|...|
T Consensus 131 ------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i 186 (337)
T 1gxr_A 131 ------------------------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp -------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ------------------------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce
Confidence 01122456788999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------
Q psy8895 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------ 338 (479)
Q Consensus 265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------ 338 (479)
.+++|+|++.++++++.|+.|++||++..+..... .....+.++.|+|++..+++++.++.+++|+.....
T Consensus 187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred EEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC
Confidence 99999999999999999999999999876554332 345679999999999999999999999999986532
Q ss_pred ----------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895 339 ----------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKC 400 (479)
Q Consensus 339 ----------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~ 400 (479)
.++...+++++.|+.|++||+.+++.+... .|...|.+++|+|++.++++++.|. +++|++
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 134567999999999999999998887554 5788999999999999998888775 999985
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=267.71 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=160.8
Q ss_pred ccEEEEEEcCCC--cEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-E
Q psy8895 220 GWVRCVAVEPGN--EWFATGSADKIIKVWDLATGKLK---------------------------------------LS-L 257 (479)
Q Consensus 220 ~~v~~~~~~~~g--~~l~sgs~d~~i~iWd~~~~~~~---------------------------------------~~-~ 257 (479)
+.|.+++|+|++ .+|++++.|++|++||+.++... .. .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 678999999998 79999999999999998764432 12 3
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC------CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEE
Q psy8895 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ------PGSMDSESGIFSMTFDNSG-SRLITTEADKTVK 330 (479)
Q Consensus 258 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 330 (479)
.+|...|.+++|+|++.++++| .|+.|++||++....... .....+...+.++.|+|++ ..+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l---------- 242 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF---------- 242 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE----------
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE----------
Confidence 6799999999999999999998 899999999974322111 0122456789999999986 555
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEccCCC------------ceEEEEEeCCCcEEEEEcCCc
Q psy8895 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTNHKK------------SVRSVALHPTLYMFASASPDN 394 (479)
Q Consensus 331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h~~------------~v~~i~~~~~~~~l~s~s~d~ 394 (479)
++|+.|++|++||+++++. +..+..|.. .|++++|+|++.+|++++.+.
T Consensus 243 ---------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 307 (447)
T 3dw8_B 243 ---------------VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLS 307 (447)
T ss_dssp ---------------EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSE
T ss_pred ---------------EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCe
Confidence 4556666677777766655 566766665 899999999999999998866
Q ss_pred EEEEeCCC-CeEEeeecCCcceE---------------EEEEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895 395 IKQWKCPE-GKFIQNLPGHNAII---------------NSICVNNEG-VLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 395 i~~w~~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
|++||+.+ ++.+..+.+|...+ ..++|+|++ +|++|+.||.|++||+.+++.+
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 99999987 88888888886432 348999998 8999999999999999999776
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.8e-31 Score=247.19 Aligned_cols=245 Identities=20% Similarity=0.343 Sum_probs=188.8
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT 109 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (479)
.+|...|++++|+|++++|||||.|++|+|||+++++.+.++.+|...+.+...... . ++.
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-------~----------l~s-- 124 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-------I----------LSS-- 124 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-------E----------EEE--
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-------E----------EEE--
Confidence 578889999999999999999999999999999999999999999887766554221 0 000
Q ss_pred cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895 110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI 189 (479)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (479)
....+.++.|+..
T Consensus 125 ----------~~~~~~~~~~~~~--------------------------------------------------------- 137 (318)
T 4ggc_A 125 ----------GSRSGHIHHHDVR--------------------------------------------------------- 137 (318)
T ss_dssp ----------EETTSEEEEEETT---------------------------------------------------------
T ss_pred ----------EecCCceEeeecC---------------------------------------------------------
Confidence 0011111111100
Q ss_pred HHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEEecCCcCEE
Q psy8895 190 IQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSLTGHVGSVR 265 (479)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~~~h~~~v~ 265 (479)
........+.+|...+.++.+.++++++++++.|+.|++||+.+++. ......|.+.|.
T Consensus 138 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 200 (318)
T 4ggc_A 138 -----------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200 (318)
T ss_dssp -----------------SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred -----------------CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceE
Confidence 00112335678999999999999999999999999999999987653 355677888999
Q ss_pred EEEEcCCCCEEE---EEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895 266 GLTVSPRHPYLF---SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES 342 (479)
Q Consensus 266 ~v~~~~~~~~l~---s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 342 (479)
+++++|++..++ +++.++.|++||.+....... ......+..+.+.+.+..+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~-------------------- 257 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VDAHSQVCSILWSPHYKELIS-------------------- 257 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EECSSCEEEEEEETTTTEEEE--------------------
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---ccceeeeeeeeecccccceEE--------------------
Confidence 999999876443 567889999999876554322 123456778888887776543
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG 403 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~ 403 (479)
++|+.|++|++||+++++++.++++|.+.|++++|+|++.+|++++.|+ |++||+.+.
T Consensus 258 ---~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 258 ---GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ---EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ---EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 3455789999999999999999999999999999999999999999885 999998654
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=283.62 Aligned_cols=219 Identities=21% Similarity=0.269 Sum_probs=176.2
Q ss_pred ecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895 215 ISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW 288 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w 288 (479)
+.+|.+.|.+++|+|+ +++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ +..+++++.|+.|++|
T Consensus 49 l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vw 128 (753)
T 3jro_A 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128 (753)
T ss_dssp ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEE
Confidence 4468889999999987 9999999999999999999986 66788899999999999999 9999999999999999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC----ee
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG----KS 364 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~----~~ 364 (479)
|++............+...+.++.|+|....... . .....+...+++|+.||+|++||++++ ..
T Consensus 129 dl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~-~-----------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~ 196 (753)
T 3jro_A 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG-E-----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (753)
T ss_dssp ECCSSSCCCCEEEECCSSCEEEEEECCCC---------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EeecCCCcceeEeecCCCceEEEEecCccccccc-c-----------cccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence 9986633222222345678999999885211100 0 000123456889999999999999876 56
Q ss_pred EEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCe-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 365 LCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGK-----FIQNLPGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
..++.+|...|++++|+|+ +.++++++.|+ |++||..+++ ......+|...|++++|+|++ ++++|+.||
T Consensus 197 ~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 6778899999999999999 89999998775 9999998764 334456688999999999998 899999999
Q ss_pred cEEEEecCCCe
Q psy8895 435 TMCFWDWRTGY 445 (479)
Q Consensus 435 ~i~lWd~~~~~ 445 (479)
.|++||+.++.
T Consensus 277 ~I~vwd~~~~~ 287 (753)
T 3jro_A 277 KVTLWKENLEG 287 (753)
T ss_dssp CEECCBCCSSS
T ss_pred EEEEEecCCCC
Confidence 99999998653
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-30 Score=272.04 Aligned_cols=240 Identities=23% Similarity=0.411 Sum_probs=205.9
Q ss_pred ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCC-----ceEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATG-----KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD 282 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 282 (479)
.+....+.+|.+.|.+++|+|++ ++|+|||.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556789999999999999864 79999999999999999763 3456789999999999999999999999999
Q ss_pred CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--------------------CCC-
Q psy8895 283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------TEE- 341 (479)
Q Consensus 283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------~~~- 341 (479)
++|++||+.++...... ..+...|.++.|+|++..+++++.|++|++|+..... .+.
T Consensus 452 g~v~vwd~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRF--VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CcEEEEECCCCcceeEE--eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 99999999876554322 3567789999999999999999999999999964321 011
Q ss_pred -CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895 342 -SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI 419 (479)
Q Consensus 342 -~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l 419 (479)
...+++|+.|++|++||++.++...++.+|...|++++|+|++.+|++++.|. |++||+.+++.+..+..+ ..|.++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 608 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL 608 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE
Confidence 24689999999999999999999999999999999999999999999998875 999999999988877654 579999
Q ss_pred EEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 420 CVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 420 ~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+|+|++.+++++.|+.|++||++++..++.+.
T Consensus 609 ~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 609 CFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence 99999965556667789999999998887764
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=262.34 Aligned_cols=282 Identities=15% Similarity=0.172 Sum_probs=217.9
Q ss_pred CCcccceEEEEEccCCceEEEecCCCeEEEEeecc----cceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895 30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT----KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF 105 (479)
Q Consensus 30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (479)
.+|.+.|++++|+|++++||+|+.|++|++||+.+ .+.+..+.+|...|.++.|.++... .++
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~l~--------- 130 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN----VLA--------- 130 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT----BEE---------
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC----EEE---------
Confidence 36899999999999999999999999999999988 4578889999999999999765221 111
Q ss_pred eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895 106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS 185 (479)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (479)
+...++.+++|++...+... ......
T Consensus 131 -------------s~~~dg~v~iwd~~~~~~~~-----------------------------------~~~~~~------ 156 (416)
T 2pm9_A 131 -------------SGGNNGEIFIWDMNKCTESP-----------------------------------SNYTPL------ 156 (416)
T ss_dssp -------------EECSSSCEEBCBTTTTSSCT-----------------------------------TTCCCB------
T ss_pred -------------EEcCCCeEEEEECCCCcccc-----------------------------------cccccc------
Confidence 12245678888764211000 000000
Q ss_pred chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecC----
Q psy8895 186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGH---- 260 (479)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---- 260 (479)
....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|
T Consensus 157 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 211 (416)
T 2pm9_A 157 -------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS 211 (416)
T ss_dssp -------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS
T ss_pred -------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc
Confidence 00013468899999999998 789999999999999999999998888876
Q ss_pred --CcCEEEEEEcCCC-CEEEEEECCC---cEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEe
Q psy8895 261 --VGSVRGLTVSPRH-PYLFSCGDDR---TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYK 333 (479)
Q Consensus 261 --~~~v~~v~~~~~~-~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~ 333 (479)
...|.+++|+|++ .++++++.|+ .|++||++............+...+.++.|+| ++..+++++.|+.|++|+
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 7899999999997 5889999998 99999998754332222114667899999999 899999999999999999
Q ss_pred CCCCCC-----------------CCC-CeEEEEeCCCcEEEEECCCCeeEEEEc--------------------------
Q psy8895 334 EDDSAT-----------------EES-HPVITGSHDCTIRLWDLAAGKSLCTLT-------------------------- 369 (479)
Q Consensus 334 ~~~~~~-----------------~~~-~~l~sgs~d~~v~iwd~~~~~~~~~~~-------------------------- 369 (479)
...... ++. ..+++++.|+.|++||+...+......
T Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 765321 233 689999999999999998765322211
Q ss_pred ---------cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895 370 ---------NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG 403 (479)
Q Consensus 370 ---------~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~ 403 (479)
.|..++++++|+|+++++++++.|+ |++|++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 372 SVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1667888999999999999999775 999998754
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-30 Score=239.96 Aligned_cols=239 Identities=21% Similarity=0.292 Sum_probs=203.6
Q ss_pred cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC 287 (479)
Q Consensus 208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~ 287 (479)
..+....+.+|.+.|.+++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34667789999999999999 89999999999999999999999988999999999999999999999999999999999
Q ss_pred EECCCCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeC
Q psy8895 288 WDLEYNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSH 350 (479)
Q Consensus 288 wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~ 350 (479)
|++........ .....+...+.++.| ++..+++++.|+.+++|+..... ......+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 99875432111 111345678999998 46799999999999999932210 014567999999
Q ss_pred CCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895 351 DCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~s 429 (479)
|+.|++|| ..+....+.. |...|.+++|+|++.+++++.++.+++||..+++.+..+.+|...|.+++++|++.|++
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 241 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEE
Confidence 99999999 4567777776 89999999999999944444444699999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEEE
Q psy8895 430 GADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 430 g~~dg~i~lWd~~~~~~~~~~~ 451 (479)
++.||.|++||+++++.++.++
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEE
T ss_pred EecCCEEEEEECCCCceeEEEe
Confidence 9999999999999998877664
No 82
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.9e-30 Score=239.00 Aligned_cols=207 Identities=12% Similarity=0.089 Sum_probs=156.2
Q ss_pred CCCccEEEEEEcCCCcEEEEEe--CCCeEEEEEC-CCCceEEEEecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEEC
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGS--ADKIIKVWDL-ATGKLKLSLTGHVGSVRGLTVSP---RHPYLFSCGDDRTVKCWDL 290 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs--~d~~i~iWd~-~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~d~~i~~wd~ 290 (479)
+|...|..+ ++|+++.+++ .|+.|++|++ .+|+.+..+.+|...+..++|++ ++..|++++.|++|++||+
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 455556554 5677776654 5999999999 45888888899999999999999 7899999999999999999
Q ss_pred CCCCcccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-
Q psy8895 291 EYNKAPVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL- 368 (479)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~- 368 (479)
++++...... .......+.+++|+|++..+++++.+..+ | .+++|+.|++|++||..+++.+..+
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~--w-----------~laSGs~D~tIklWd~~tgk~l~v~~ 277 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK--E-----------SESLRSPVFQLIVINPKTTLSVGVML 277 (356)
T ss_dssp TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------------------CCEEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc--c-----------eeeccCCCcEEEEEECCCCEEEEEEE
Confidence 9887654321 11123467888999999999888765432 3 3689999999999999999887765
Q ss_pred ----ccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEE-EEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895 369 ----TNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIIN-SICVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 369 ----~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~-~l~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
.+|...+.+..++ +.++++++.| .|++||+.++++++++.+|...+. +++|+||+ +|+||+.|++|||||+
T Consensus 278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3666554444443 7788998877 599999999999999999987654 68999999 8999999999999995
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.2e-29 Score=241.51 Aligned_cols=236 Identities=17% Similarity=0.286 Sum_probs=209.7
Q ss_pred EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895 212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291 (479)
Q Consensus 212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~ 291 (479)
...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCC---------------------------
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSAT--------------------------- 339 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~--------------------------- 339 (479)
+.+..... .....+.++.|+|++..+++++.+ +.+.+|+......
T Consensus 105 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 105 NGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 77654332 255679999999999999999999 9999999754321
Q ss_pred ---CCCCeEEEEeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc
Q psy8895 340 ---EESHPVITGSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA 414 (479)
Q Consensus 340 ---~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~ 414 (479)
++...+++++.|+.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.| .+++||..+++.+..+. +..
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 2345789999999999999998 78888999999999999999999999988877 49999999999888877 777
Q ss_pred eEEEEEEcCCC-EEEEEeCCC--------------cEEEEecCCCeEEEEEE
Q psy8895 415 IINSICVNNEG-VLVSGADNG--------------TMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 415 ~v~~l~~~~~~-~l~sg~~dg--------------~i~lWd~~~~~~~~~~~ 451 (479)
.+.+++++|++ .+++++.++ .+++||..+++.+..++
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 89999999998 889998888 89999999998887764
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=1.5e-30 Score=253.17 Aligned_cols=241 Identities=18% Similarity=0.189 Sum_probs=199.8
Q ss_pred ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcC-CCCEEEEEECCCc
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSP-RHPYLFSCGDDRT 284 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~-~~~~l~s~~~d~~ 284 (479)
.+..+.+.+|.+.|.+++|+|++ ++|++|+.|+.|++||+.+++....+. +|...|.+++|+| ++.++++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45667889999999999999999 999999999999999999888777665 6999999999999 6789999999999
Q ss_pred EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCC-eEEE
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESH-PVIT 347 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~-~l~s 347 (479)
|++||++............+...+.++.|+|++..+++++.|+.|++|+..... .+... .+++
T Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 999999854322222223345779999999999999999999999999974321 12334 7999
Q ss_pred EeCCCcEEEEECCC----CeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCCeEEeeecCCc--------
Q psy8895 348 GSHDCTIRLWDLAA----GKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEGKFIQNLPGHN-------- 413 (479)
Q Consensus 348 gs~d~~v~iwd~~~----~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~-------- 413 (479)
|+.|++|++||+++ +..+..+ +|...|++++|+| ++.+|++++.| .+++||+.+++....+.+|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 99999999999997 5666666 6999999999999 99999988877 59999999887766665443
Q ss_pred ---------ceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 414 ---------AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 414 ---------~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+.+..++++|++.+ +|+.|+.|++||+.+++.++.++
T Consensus 302 ~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEEC
T ss_pred ceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeec
Confidence 33455777888855 88999999999999999887764
No 85
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=8.4e-31 Score=257.94 Aligned_cols=270 Identities=11% Similarity=0.120 Sum_probs=212.2
Q ss_pred cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeec
Q psy8895 29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLG 108 (479)
Q Consensus 29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (479)
+.+| ..+....|+|++++||+|+.|++|+|||+.+++....+.+|...|.++.|.++... ++
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~------------ 155 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA-----LI------------ 155 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE-----EE------------
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE-----EE------------
Confidence 4455 44556688999999999999999999999999998888999999999999775321 11
Q ss_pred ccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchh
Q psy8895 109 TAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ 188 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (479)
+...++.+++|++...
T Consensus 156 ----------s~s~d~~i~iwd~~~~------------------------------------------------------ 171 (420)
T 3vl1_A 156 ----------SSSQDMQLKIWSVKDG------------------------------------------------------ 171 (420)
T ss_dssp ----------EEETTSEEEEEETTTC------------------------------------------------------
T ss_pred ----------EEeCCCeEEEEeCCCC------------------------------------------------------
Confidence 1223466777764310
Q ss_pred HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC---CcCEE
Q psy8895 189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH---VGSVR 265 (479)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---~~~v~ 265 (479)
+....+.+|.+.|.+++|+|++++|++++.|+.|++||+++++....+..| ...+.
T Consensus 172 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 172 ---------------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp ---------------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred ---------------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 011245689999999999999999999999999999999999998888753 34555
Q ss_pred EEE---------------------EcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC-EEEEE
Q psy8895 266 GLT---------------------VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS-RLITT 323 (479)
Q Consensus 266 ~v~---------------------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 323 (479)
+++ |+|++.++++++.|+.|++||+++.+..... ...+...+.++.|+|++. .++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEE
Confidence 554 5788999999999999999999876654332 123567899999999998 99999
Q ss_pred eCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCcEEEEECCCC---------eeEEEEccCCCceE
Q psy8895 324 EADKTVKLYKEDDSAT------------------EESHPVITGSHDCTIRLWDLAAG---------KSLCTLTNHKKSVR 376 (479)
Q Consensus 324 ~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~v~iwd~~~~---------~~~~~~~~h~~~v~ 376 (479)
+.|+.|++|+...... .+...+++++.|++|++||+... .....+..|...|.
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVS 389 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCC
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceE
Confidence 9999999999876432 12346899999999999998863 12234557888999
Q ss_pred EEEEeCCCc----EEEEEcCCcEEEEeCCC
Q psy8895 377 SVALHPTLY----MFASASPDNIKQWKCPE 402 (479)
Q Consensus 377 ~i~~~~~~~----~l~s~s~d~i~~w~~~~ 402 (479)
+++|+|++. ++++++.+.+.+|++.+
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999988 77888888899999753
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.4e-29 Score=251.03 Aligned_cols=234 Identities=27% Similarity=0.426 Sum_probs=204.1
Q ss_pred eEEEecCCCccE-EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895 211 LYRVISGHLGWV-RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289 (479)
Q Consensus 211 ~~~~~~~h~~~v-~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd 289 (479)
....+.+|.+.| .++.+ ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++ .+++|+.|++|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 345788998885 66666 57899999999999999999999999999999999999999988 899999999999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEEe--CCCCEEEEEeCCCeEEEEeCCCCCC----------------------------
Q psy8895 290 LEYNKAPVQPGSMDSESGIFSMTFD--NSGSRLITTEADKTVKLYKEDDSAT---------------------------- 339 (479)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~---------------------------- 339 (479)
+++++..... ..+...+.++.+. +++..+++++.|+++++|+......
T Consensus 190 ~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 190 IKKGCCTHVF--EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp TTTTEEEEEE--CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred CCCCcEEEEE--CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9877654332 2466789999998 5778999999999999999865421
Q ss_pred ----------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee
Q psy8895 340 ----------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN 408 (479)
Q Consensus 340 ----------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~ 408 (479)
.....+++|+.|++|++||+++++++..+.+|...|.+++|+|++..+++++.|+ |++||..+++.+..
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 1135689999999999999999999999999999999999999999999998875 99999999999999
Q ss_pred ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 409 LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 409 ~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
+.+|...|.+++++ +.+|++|+.||+|++||++++......
T Consensus 348 ~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 348 LQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp ECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 99999999999998 469999999999999999988655443
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=8.4e-30 Score=249.59 Aligned_cols=250 Identities=18% Similarity=0.333 Sum_probs=195.5
Q ss_pred CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA 110 (479)
Q Consensus 31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (479)
+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|...+.++.+... .+.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~-------------- 190 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-------VLS-------------- 190 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-------EEE--------------
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-------EEE--------------
Confidence 48899999999999999999999999999999999999999999999999887321 111
Q ss_pred CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895 111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII 190 (479)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (479)
....++.+++|++...
T Consensus 191 --------~~~~dg~i~i~d~~~~-------------------------------------------------------- 206 (401)
T 4aez_A 191 --------SGSRSGAIHHHDVRIA-------------------------------------------------------- 206 (401)
T ss_dssp --------EEETTSEEEEEETTSS--------------------------------------------------------
T ss_pred --------EEcCCCCEEEEecccC--------------------------------------------------------
Confidence 1223456666654310
Q ss_pred HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEc
Q psy8895 191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS 270 (479)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~ 270 (479)
......+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++....+.+|...|.+++|+
T Consensus 207 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 207 ------------------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp ------------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred ------------------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence 01123456799999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-EEEEEE--CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895 271 PRHP-YLFSCG--DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT 347 (479)
Q Consensus 271 ~~~~-~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s 347 (479)
|++. ++++++ .|+.|++||+++.+..... .....+.++.|+|++..++++ +
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~-----------------------~ 322 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSPHSKEIMST-----------------------H 322 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEECSSSSEEEEE-----------------------E
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEEECCCCCeEEEE-----------------------e
Confidence 9775 455554 7999999999876654332 345679999999988876542 2
Q ss_pred EeCCCcEEEEECCCCeeE--EEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee
Q psy8895 348 GSHDCTIRLWDLAAGKSL--CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL 409 (479)
Q Consensus 348 gs~d~~v~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~ 409 (479)
|+.|+.|++||+.+++.. ..+.+|...|.+++|+|++.++++++.|+ +++|++.+++.+...
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 446778888888875544 34678999999999999999999998775 999999998876654
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-31 Score=267.47 Aligned_cols=270 Identities=11% Similarity=0.044 Sum_probs=197.5
Q ss_pred ecCCcccceEEEEEccC------CceEEEecCCCeEEEEeecccce-----------EeeecccccceEEEEecCCCCcc
Q psy8895 28 HYHGHLSSVNTISLHPT------IDVLITAGRDSTARVWDVRTKAN-----------VYTLTGHTNTIASVVTQASEPQV 90 (479)
Q Consensus 28 ~~~gH~~~V~~l~~sp~------g~~laSgs~D~~vriWd~~t~~~-----------~~~~~~h~~~v~~~~~~~~~~~~ 90 (479)
++.+|.+.|++|+|+|+ +.+|||||.||+|||||+.+++. ..++.+|...|.++.|.++.
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--- 278 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--- 278 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---
Confidence 45678899999999997 57999999999999999987642 24678899999999886421
Q ss_pred ccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccc
Q psy8895 91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQE 170 (479)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (479)
. +.+...++++++|++....
T Consensus 279 ---~----------------------lasgs~DgtV~lWD~~~~~----------------------------------- 298 (524)
T 2j04_B 279 ---T----------------------VVCGFKNGFVAEFDLTDPE----------------------------------- 298 (524)
T ss_dssp ---E----------------------EEEEETTSEEEEEETTBCS-----------------------------------
T ss_pred ---e----------------------EEEEeCCCEEEEEECCCCC-----------------------------------
Confidence 1 1122355788888753100
Q ss_pred cccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEE--EEcCCC-cEEEEEeCCCeEEEEE
Q psy8895 171 LVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCV--AVEPGN-EWFATGSADKIIKVWD 247 (479)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~g-~~l~sgs~d~~i~iWd 247 (479)
.....+.+|.+.|.++ +|+|+| .+|+|||.|++|+|||
T Consensus 299 ---------------------------------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 299 ---------------------------------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp ---------------------------------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred ---------------------------------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 0011356899999999 578888 8999999999999999
Q ss_pred CCCCceEEEEecCCc--CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895 248 LATGKLKLSLTGHVG--SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325 (479)
Q Consensus 248 ~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 325 (479)
++++++...+.+|.. .|.+++|+|++..+++++.|++|++||++...+.... ..+...|.+++|+|++..+++|+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--EECSSCEEEEECCSSCCBCEEEET
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--ecCCCceEEEEeCCCCCeEEEEEC
Confidence 999887777777753 5889999999999999999999999999876543322 246778999999999999999999
Q ss_pred CCeEEEEeCCCCCCCC---CC------eE--EEEeCCC-cEEEEE---C---C-CCeeEEEEccCCCceEEEEEeCCC--
Q psy8895 326 DKTVKLYKEDDSATEE---SH------PV--ITGSHDC-TIRLWD---L---A-AGKSLCTLTNHKKSVRSVALHPTL-- 384 (479)
Q Consensus 326 d~~i~~~~~~~~~~~~---~~------~l--~sgs~d~-~v~iwd---~---~-~~~~~~~~~~h~~~v~~i~~~~~~-- 384 (479)
|++|++|+........ .. .+ +..+.|+ .+++|| + . ++..+.++.+|...|.+++|+|++
T Consensus 418 Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~ 497 (524)
T 2j04_B 418 DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG 497 (524)
T ss_dssp TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence 9999999975432111 00 11 2223344 366665 1 1 355677888999999999999995
Q ss_pred -cEEEEEcCCc-EEEEeCC
Q psy8895 385 -YMFASASPDN-IKQWKCP 401 (479)
Q Consensus 385 -~~l~s~s~d~-i~~w~~~ 401 (479)
..+|+++.++ |++|++.
T Consensus 498 ~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 498 GKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp TTEEEEECTTSEEEEEECS
T ss_pred cHHHHhhccCceEEEEEcc
Confidence 4899999875 9999974
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.2e-29 Score=247.60 Aligned_cols=237 Identities=20% Similarity=0.238 Sum_probs=206.0
Q ss_pred eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc------eEEEEecCCcCEEEEEEcCC----C---CEE
Q psy8895 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK------LKLSLTGHVGSVRGLTVSPR----H---PYL 276 (479)
Q Consensus 210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~------~~~~~~~h~~~v~~v~~~~~----~---~~l 276 (479)
+....+.+|.+.|.+++|+| ++|++|+.|+.|++||+.+++ ....+.+|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34567889999999999998 899999999999999999988 78889999999999999999 9 999
Q ss_pred EEEECCCcEEEEECCCCCc-----ccCCCCCCC-----CCCeEEEEEe----CCCCE-EEEEeCCCeEEEEeCCC-----
Q psy8895 277 FSCGDDRTVKCWDLEYNKA-----PVQPGSMDS-----ESGIFSMTFD----NSGSR-LITTEADKTVKLYKEDD----- 336 (479)
Q Consensus 277 ~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~d~~i~~~~~~~----- 336 (479)
++++.|+.|++||++..+. .... ..+ ...+.++.|+ |++.. +++++.|+.|++|+...
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL--DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE--CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceee--cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 9999999999999976654 2221 122 3789999999 99999 99999999999998765
Q ss_pred -CCC-----------------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEcc---C---CCceEEEEE
Q psy8895 337 -SAT-----------------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTN---H---KKSVRSVAL 380 (479)
Q Consensus 337 -~~~-----------------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~---h---~~~v~~i~~ 380 (479)
... ++. .+++++.|+.|++||+++++.+..+.. | ...|++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 110 123 789999999999999999999999998 9 999999999
Q ss_pred eCCCcEEEEEcCC----cEEEEeCCCCeEEeeecC-------------CcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895 381 HPTLYMFASASPD----NIKQWKCPEGKFIQNLPG-------------HNAIINSICVNNEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 381 ~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~ 442 (479)
+|++.+|++++.+ .|++||..+++.+..+.+ |...|.+++++|++ +|++++.||.|++||++
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999998876 599999999999999998 99999999999998 99999999999999999
Q ss_pred CCeEEEEEE
Q psy8895 443 TGYNFQRLQ 451 (479)
Q Consensus 443 ~~~~~~~~~ 451 (479)
+++.+..++
T Consensus 322 ~~~~~~~~~ 330 (397)
T 1sq9_A 322 TKERITTLN 330 (397)
T ss_dssp TTEEEEEEE
T ss_pred CCceeEEEe
Confidence 999888776
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=5.3e-29 Score=247.33 Aligned_cols=264 Identities=26% Similarity=0.391 Sum_probs=214.4
Q ss_pred EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895 25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM 104 (479)
Q Consensus 25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (479)
.+..+.+|.++|.+++|+ +++|++|+.|++|++||+.+++.+.++.+|...+.++.+... .++
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-------~l~-------- 213 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-------RVV-------- 213 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-------EEE--------
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-------EEE--------
Confidence 356788999999999998 579999999999999999999999999999999998887421 011
Q ss_pred EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895 105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA 184 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (479)
....++.+++|+...
T Consensus 214 --------------s~s~dg~i~~wd~~~--------------------------------------------------- 228 (445)
T 2ovr_B 214 --------------SGSRDATLRVWDIET--------------------------------------------------- 228 (445)
T ss_dssp --------------EEETTSEEEEEESSS---------------------------------------------------
T ss_pred --------------EEeCCCEEEEEECCC---------------------------------------------------
Confidence 112345666665421
Q ss_pred CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895 185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264 (479)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v 264 (479)
.+....+.+|...|.++++ +++++++|+.|+.|++||+++++.+..+.+|...|
T Consensus 229 ------------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 229 ------------------------GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ------------------------CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred ------------------------CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 0112345678999999998 68899999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----
Q psy8895 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----- 339 (479)
Q Consensus 265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----- 339 (479)
.++++ ++.++++++.|+.|++||+++.+..... ..+...+.++.++ +..+++++.|+.|++|+......
T Consensus 283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 99999 7789999999999999999877654332 2345567777664 67999999999999999865321
Q ss_pred -------------CCCCeEEEEeCCCcEEEEECCCCeeEEEE-----ccCCCceEEEEEeCCCcEEEEEcCCc-----EE
Q psy8895 340 -------------EESHPVITGSHDCTIRLWDLAAGKSLCTL-----TNHKKSVRSVALHPTLYMFASASPDN-----IK 396 (479)
Q Consensus 340 -------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~s~d~-----i~ 396 (479)
.....+++|+.||+|++||+.+++.+..+ ..|...|++++|+|++.++++++.|+ +.
T Consensus 357 ~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred cCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 12457899999999999999999998888 46788999999999999999998774 88
Q ss_pred EEeCCC
Q psy8895 397 QWKCPE 402 (479)
Q Consensus 397 ~w~~~~ 402 (479)
+||...
T Consensus 437 v~df~~ 442 (445)
T 2ovr_B 437 VLDFDV 442 (445)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999854
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=8.3e-30 Score=246.33 Aligned_cols=229 Identities=14% Similarity=0.189 Sum_probs=199.7
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
+..|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|++.++++++.|+.|++||++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44589999999999999999999999999999999987 7888999999999999999999999999999999999976
Q ss_pred CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEeCC
Q psy8895 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGSHD 351 (479)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs~d 351 (479)
.+.........+...+.++.|+|++..+++++.++.+++|+...... ++...+++++.|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 65322221234567899999999999999999999999998764321 234579999999
Q ss_pred CcEEEEEC------------------CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC
Q psy8895 352 CTIRLWDL------------------AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH 412 (479)
Q Consensus 352 ~~v~iwd~------------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h 412 (479)
+.|++||+ ..++.+..+..|...|.+++|+|++.++++++.|. +++||..+++.+..+..|
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 99999995 46788888989999999999999999999988775 999999999999999999
Q ss_pred cceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895 413 NAIINSICVNNEGVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 413 ~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~ 443 (479)
...|.+++++|++.+++++.|+.|++||+.+
T Consensus 244 ~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 9999999999999544444999999999988
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8e-30 Score=252.10 Aligned_cols=207 Identities=22% Similarity=0.367 Sum_probs=170.1
Q ss_pred EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCce-------EEEEecCCcCEEEEEEcC-CCCEEEEEECCCc
Q psy8895 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKL-------KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRT 284 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~-------~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~ 284 (479)
.+.+|...|.+++|+|++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+| ++.++++++.|+.
T Consensus 176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 3557889999999999988 999999999999999987422 456778999999999999 6778999999999
Q ss_pred EEEEECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-C
Q psy8895 285 VKCWDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-G 362 (479)
Q Consensus 285 i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~ 362 (479)
|++||++........ ....+...+.++.|+|++.. .+++|+.|++|++||++. .
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~------------------------~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF------------------------ILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT------------------------EEEEEETTSEEEEEETTCTT
T ss_pred EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC------------------------EEEEEeCCCeEEEEeCCCCC
Confidence 999999865311111 11245677999999987652 256777888888899887 5
Q ss_pred eeEEEEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCC--------------CeEEeeecCCcceEEEEEEcCCC-
Q psy8895 363 KSLCTLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPE--------------GKFIQNLPGHNAIINSICVNNEG- 425 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~--------------~~~~~~~~~h~~~v~~l~~~~~~- 425 (479)
.++..+..|...|++++|+|++ .+|++++.| .|++||+.. .+++..+.+|...|.+++++|++
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence 6788888999999999999987 567777666 599999976 36677888999999999999987
Q ss_pred -EEEEEeCCCcEEEEecCCC
Q psy8895 426 -VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 426 -~l~sg~~dg~i~lWd~~~~ 444 (479)
+|++++.||.|++|++.++
T Consensus 392 ~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TEEEEEETTSEEEEEEECHH
T ss_pred CEEEEEECCCCEEEeEcccc
Confidence 7999999999999998764
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=246.34 Aligned_cols=227 Identities=15% Similarity=0.230 Sum_probs=193.7
Q ss_pred cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA 295 (479)
Q Consensus 216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 295 (479)
.+|.+.|.+++|+|++++|++|+.|+.|++|| .+++....+.+|...|.+++|+|++.++++++.|+.|++||+++.+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 35788999999999999999999999999999 67788889999999999999999999999999999999999987654
Q ss_pred ccCCCCCCC-------------CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeE
Q psy8895 296 PVQPGSMDS-------------ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPV 345 (479)
Q Consensus 296 ~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l 345 (479)
......... ...+.++.|+++ ..+++++.++.+.+|+...... +....+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 332211110 111778888886 5688999999999999865321 234679
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895 346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNE 424 (479)
Q Consensus 346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~ 424 (479)
++++.|+.|++||++.++.+..+..|...|.+++|+|++ ++++++.+ .+++||..+++.+..+..|...|.+++++|+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence 999999999999999999999999999999999999999 66666665 5999999999999999999999999999999
Q ss_pred C-EEEEEeCCCcEEEEecCCCe
Q psy8895 425 G-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 425 ~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
+ +|++++.||.|++||++++.
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHH
T ss_pred CCEEEEEECCCeEEEEECCCCc
Confidence 8 89999999999999999876
No 94
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.2e-29 Score=244.39 Aligned_cols=183 Identities=17% Similarity=0.322 Sum_probs=152.8
Q ss_pred CCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEE---ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 217 GHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSL---TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 217 ~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
+|...|.+++|+| ++++|++++.|+.|++||+++++....+ .+|...|.+++|+|++.++++++.|+.|++||++.
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 4667788999999 8999999999999999999999988888 68999999999999999999999999999999976
Q ss_pred CCcccCC--------------------------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------
Q psy8895 293 NKAPVQP--------------------------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------- 339 (479)
Q Consensus 293 ~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------- 339 (479)
.+..... ....+...+.++.|+ +..+++++.|+.|++|+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence 5422100 001156778899998 67999999999999999754321
Q ss_pred ------------------------CC--CCeEEEEeCCCcEEEEECCCCee----EEEEccC--CCceEEEEEeCCCcEE
Q psy8895 340 ------------------------EE--SHPVITGSHDCTIRLWDLAAGKS----LCTLTNH--KKSVRSVALHPTLYMF 387 (479)
Q Consensus 340 ------------------------~~--~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h--~~~v~~i~~~~~~~~l 387 (479)
.+ ...+++|+.|+.|++||+.++++ ...+..| ...|++++|+|++.+|
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence 12 67899999999999999998753 4477777 7899999999999999
Q ss_pred EEEcCCc-EEEEeCC
Q psy8895 388 ASASPDN-IKQWKCP 401 (479)
Q Consensus 388 ~s~s~d~-i~~w~~~ 401 (479)
++++.|. |++||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 9998875 9999975
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.7e-30 Score=243.73 Aligned_cols=207 Identities=24% Similarity=0.323 Sum_probs=162.7
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWD 289 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd 289 (479)
.+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.++. .+..+.+|.+.|.+++|++ ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998875 4568899999999999986 488999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee---EE
Q psy8895 290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS---LC 366 (479)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~---~~ 366 (479)
++++..........+...|.+++|+|+.. ...+++|+.|++|++||++.+.. ..
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-----------------------g~~lasgs~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDY-----------------------GLILACGSSDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTT-----------------------CSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCC-----------------------CcEEEEEcCCCCEEEEecCCCCCcceee
Confidence 98653211111124567788999988621 12356677777777777775422 34
Q ss_pred EEccCCCceEEEEEeCC-----------------CcEEEEEcCCc-EEEEeCCCC---eEEeeecCCcceEEEEEEcCC-
Q psy8895 367 TLTNHKKSVRSVALHPT-----------------LYMFASASPDN-IKQWKCPEG---KFIQNLPGHNAIINSICVNNE- 424 (479)
Q Consensus 367 ~~~~h~~~v~~i~~~~~-----------------~~~l~s~s~d~-i~~w~~~~~---~~~~~~~~h~~~v~~l~~~~~- 424 (479)
.+.+|...|.+++|+|+ +.+|++++.|. |++||..++ +....+.+|...|.+++|+|+
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 55689999999999997 36788888775 999998755 467788999999999999987
Q ss_pred ----CEEEEEeCCCcEEEEecCC
Q psy8895 425 ----GVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 425 ----~~l~sg~~dg~i~lWd~~~ 443 (479)
.+|++|+.|++|++||+++
T Consensus 225 ~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 225 GLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SCSCCEEEEEETTCEEEEEECSS
T ss_pred CCCCceEEEEcCCCeEEEEEccC
Confidence 3799999999999999886
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-28 Score=240.66 Aligned_cols=228 Identities=14% Similarity=0.136 Sum_probs=186.6
Q ss_pred ecCCCccEEEEEEcCCCcEE-EEEeCCCeEEEEECC--CCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895 215 ISGHLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLA--TGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~--~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd 289 (479)
..+|.+.|.+++|+|++++| ++|+.|+.|++||+. +++....+. .|...|.+++|+|++.+|++++.|+.+++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34788999999999999996 899999999999999 888887776 5678999999999999999999999999999
Q ss_pred CCCCCccc--CCCCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895 290 LEYNKAPV--QPGSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT 347 (479)
Q Consensus 290 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s 347 (479)
+....... ......+...+.++.|+|+ +.++++++.|++|++|+...... .+...+++
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s 257 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLS 257 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEE
Confidence 97655432 1112345678999999999 89999999999999999764321 03567999
Q ss_pred EeCCCcEEEEECCCCeeEEEEcc-------------------------CCCceEEEEEeCCCcEEEEEc-CC-cEEEEeC
Q psy8895 348 GSHDCTIRLWDLAAGKSLCTLTN-------------------------HKKSVRSVALHPTLYMFASAS-PD-NIKQWKC 400 (479)
Q Consensus 348 gs~d~~v~iwd~~~~~~~~~~~~-------------------------h~~~v~~i~~~~~~~~l~s~s-~d-~i~~w~~ 400 (479)
|+.|++|++||+++++.+..+.. ....|.+++++|++.++++++ .+ .|++|++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999998888763 235789999999999888876 44 5999999
Q ss_pred --CCC---eEEeeecCCcceEEEEEEcCCCEEEEEeC-------CCcEEEEecCC
Q psy8895 401 --PEG---KFIQNLPGHNAIINSICVNNEGVLVSGAD-------NGTMCFWDWRT 443 (479)
Q Consensus 401 --~~~---~~~~~~~~h~~~v~~l~~~~~~~l~sg~~-------dg~i~lWd~~~ 443 (479)
.++ +.+..+.+| ..|.+++++|++.+++.+. +..|++|.+..
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 565 677788888 7899999999876666543 55689998753
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=251.57 Aligned_cols=246 Identities=15% Similarity=0.250 Sum_probs=197.7
Q ss_pred CCCcceeEEEe-cCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCC---Cc---eEEEEecCCcCEEEEEEcCCCCEE
Q psy8895 205 WHAPWKLYRVI-SGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLAT---GK---LKLSLTGHVGSVRGLTVSPRHPYL 276 (479)
Q Consensus 205 ~~~~~~~~~~~-~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~---~~---~~~~~~~h~~~v~~v~~~~~~~~l 276 (479)
|....+....+ .+|.+.|.+++|+| ++++|++|+.|++|++||+.+ +. ....+ +|...|.+++|+|++.++
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence 44455666777 89999999999999 999999999999999999876 33 23333 499999999999999999
Q ss_pred EEEECCCcEEEEECC---CCCcccC--------CCCCC--CCCCeEEEE--EeCCCCEEEEEeCCCeEEEEeCCCCCC--
Q psy8895 277 FSCGDDRTVKCWDLE---YNKAPVQ--------PGSMD--SESGIFSMT--FDNSGSRLITTEADKTVKLYKEDDSAT-- 339 (479)
Q Consensus 277 ~s~~~d~~i~~wd~~---~~~~~~~--------~~~~~--~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~~~~~~~~-- 339 (479)
++++.|+.|++||++ .++.... ..... ....+.++. +++++..+++++.|+.|++|+......
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999985 2221110 00001 345566766 557899999999999999999865321
Q ss_pred -----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEc-cCCCceEEEEEe----CCCcEEEEEcCCc-EE
Q psy8895 340 -----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHKKSVRSVALH----PTLYMFASASPDN-IK 396 (479)
Q Consensus 340 -----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~----~~~~~l~s~s~d~-i~ 396 (479)
+....+++|+.|++|++||+++++++.++. .|...|++++++ |++.++++++.|. |+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 235679999999999999999999999886 788899999665 4577999999886 99
Q ss_pred EEeCCCCeEEeeecC--------------------------CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 397 QWKCPEGKFIQNLPG--------------------------HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 397 ~w~~~~~~~~~~~~~--------------------------h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
+||+.+++.+..+.+ |...|++++++++.+|++|+.||.|++||+++++.++.+
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEE
Confidence 999999988776653 556688899994449999999999999999999877665
Q ss_pred E
Q psy8895 451 Q 451 (479)
Q Consensus 451 ~ 451 (479)
.
T Consensus 367 ~ 367 (437)
T 3gre_A 367 I 367 (437)
T ss_dssp E
T ss_pred e
Confidence 4
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=6.3e-29 Score=238.61 Aligned_cols=232 Identities=16% Similarity=0.251 Sum_probs=189.9
Q ss_pred eEEEecCCCccEEEEEEcCCCc-EEEEEeC---CCeEEEEECCCCceEEE-EecCCcCEEEEEEcCC---CCEEEEEECC
Q psy8895 211 LYRVISGHLGWVRCVAVEPGNE-WFATGSA---DKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPR---HPYLFSCGDD 282 (479)
Q Consensus 211 ~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~---d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~---~~~l~s~~~d 282 (479)
....+.+|.+.|.+++|+|+++ ++++|+. |+.|++||+.+++.... ..+|...|.+++|+|+ +.++++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3456678999999999999985 4566766 99999999999877544 3478999999999998 6999999999
Q ss_pred CcEEEEECCCCC-cccCCCCCCCCCCeEEEEE------eCCCCEEEEEeCCCeEEEEeCCCCC-----------------
Q psy8895 283 RTVKCWDLEYNK-APVQPGSMDSESGIFSMTF------DNSGSRLITTEADKTVKLYKEDDSA----------------- 338 (479)
Q Consensus 283 ~~i~~wd~~~~~-~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~d~~i~~~~~~~~~----------------- 338 (479)
+.|++||++..+ ..... ..+...+.++.| ++++..+++++.|+.+++|+.....
T Consensus 90 g~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp SCEEEECTTSCSSCSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CeEEEEeCCCCCccEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999998765 32221 246678999855 6789999999999999999976532
Q ss_pred ---------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC---CCcEEEEEcCC-cEEEEeCCCCeE
Q psy8895 339 ---------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP---TLYMFASASPD-NIKQWKCPEGKF 405 (479)
Q Consensus 339 ---------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~s~d-~i~~w~~~~~~~ 405 (479)
..+...+++++.|+.|++||+++++.... ..|...|.+++|+| ++..+++++.+ .+++||..+++.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 12345789999999999999999887544 56889999999999 88888888876 499999987765
Q ss_pred Eeeec-----CCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCe
Q psy8895 406 IQNLP-----GHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 406 ~~~~~-----~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~ 445 (479)
...+. +|...|.+++++|++ +|++|+.||.|++||++++.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 54444 899999999999987 59999999999999998654
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.8e-28 Score=234.12 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=197.3
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEE
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCW 288 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~w 288 (479)
....+|.+.|.+++|+|++++|++++.|+.|++||+.++. ....+.+|...|.+++|+|++. ++++++.|+.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3456899999999999999999999999999999998877 3445668999999999999999 99999999999999
Q ss_pred EC-CCCCcccCCCCCC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---------CCCC--------------CC
Q psy8895 289 DL-EYNKAPVQPGSMD--SESGIFSMTFDNSGSRLITTEADKTVKLYKEDD---------SATE--------------ES 342 (479)
Q Consensus 289 d~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~---------~~~~--------------~~ 342 (479)
|+ +..+.... .. +...|.++.|+| +..+++++.|+.|++|+... .... ..
T Consensus 85 d~~~~~~~~~~---~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQAL---TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEEC---BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EeccCCceEec---cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 99 76654221 23 677899999999 99999999999999999654 2210 12
Q ss_pred CeEEEEeCCCcEEEEECCC-Cee--EEEEccCCCceEEEEEeC-CCcEEEEEcCCc-EEEEeCCCC------eEEeeecC
Q psy8895 343 HPVITGSHDCTIRLWDLAA-GKS--LCTLTNHKKSVRSVALHP-TLYMFASASPDN-IKQWKCPEG------KFIQNLPG 411 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~-~~~--~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~-i~~w~~~~~------~~~~~~~~ 411 (479)
..+++++.|+.|++||++. +.. ......|...|++++|+| ++.++++++.+. +++|+.... +....+.+
T Consensus 161 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 2388999999999999998 442 334456888999999999 999999888775 999999876 66777777
Q ss_pred Ccc---------eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 412 HNA---------IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 412 h~~---------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
|.. .|.+++++|++ +|++|+.||.|++||+.+++.+..++
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 755 99999999988 89999999999999999998776553
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.3e-29 Score=249.16 Aligned_cols=241 Identities=18% Similarity=0.203 Sum_probs=186.8
Q ss_pred eeEEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcC-CCCEEEEEECCCcE
Q psy8895 210 KLYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTV 285 (479)
Q Consensus 210 ~~~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i 285 (479)
+......+|...|+|++|+| ++++||+|+.||.|+|||+.++.. ...+.+|.+.|.+++|+| ++.+|++++.|++|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34445678999999999999 567999999999999999987754 345678999999999998 68899999999999
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CC-CCeEEEE
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EE-SHPVITG 348 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~-~~~l~sg 348 (479)
++||++................+.++.|++++..+++++.|+.|++|+...... +. ...+++|
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence 999997654332222223345577899999999999999999999999764321 11 2468899
Q ss_pred eCCCcEEEEECCCCeeEEE---EccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcce------EEE
Q psy8895 349 SHDCTIRLWDLAAGKSLCT---LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAI------INS 418 (479)
Q Consensus 349 s~d~~v~iwd~~~~~~~~~---~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~------v~~ 418 (479)
+.|++|++||++..+.... ..+|...|++++|+|++.+|++++.|+ |++||..+++....+..|... +..
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK 349 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence 9999999999988664433 357999999999999999999998875 999999998877776665421 222
Q ss_pred EEEcCCC-EEEEE------------eCCCcEEEEecCCCeEEEEE
Q psy8895 419 ICVNNEG-VLVSG------------ADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 419 l~~~~~~-~l~sg------------~~dg~i~lWd~~~~~~~~~~ 450 (479)
..+++++ .++++ .+++.|++||..+|..+..+
T Consensus 350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 3445444 44433 34568999999999887654
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=238.15 Aligned_cols=236 Identities=20% Similarity=0.286 Sum_probs=190.4
Q ss_pred EEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEe-------------cCCcCEEEEEEcC-CCCEE
Q psy8895 212 YRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLT-------------GHVGSVRGLTVSP-RHPYL 276 (479)
Q Consensus 212 ~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-------------~h~~~v~~v~~~~-~~~~l 276 (479)
...+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.++
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 346778999999999999 99999999999999999999876543332 5999999999999 77899
Q ss_pred EEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895 277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSAT-------------- 339 (479)
Q Consensus 277 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~-------------- 339 (479)
++++.|+.|++||++..+..... .....+.++.+.+. +..+++++.++.+++|+......
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEeCCCeEEEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999876544322 24566888988884 44999999999999999865421
Q ss_pred ---CCCC-eEEEEeCCCcEEEEECCCCe-eEEEE---------------ccCCCceEEEEEeCCCcEEEEEcCC-cEEEE
Q psy8895 340 ---EESH-PVITGSHDCTIRLWDLAAGK-SLCTL---------------TNHKKSVRSVALHPTLYMFASASPD-NIKQW 398 (479)
Q Consensus 340 ---~~~~-~l~sgs~d~~v~iwd~~~~~-~~~~~---------------~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w 398 (479)
+... .+++|+.|+.|++||++.+. ++..+ ..|...|++++|+|++.++++++.| .+++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 2233 58899999999999998765 34444 5688899999999999999888877 49999
Q ss_pred eCCCC-----------------------------------------------eEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895 399 KCPEG-----------------------------------------------KFIQNLPGHNAIINSICVNNEG-VLVSG 430 (479)
Q Consensus 399 ~~~~~-----------------------------------------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg 430 (479)
|+.++ +.+..+.+|...|.+++++|++ +|++|
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 97654 4456678899999999999998 89999
Q ss_pred eCCCcEEEEecCCCeEEEEE
Q psy8895 431 ADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 431 ~~dg~i~lWd~~~~~~~~~~ 450 (479)
+.||.|++||+++++.+...
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp ETTSCEEEEEECC-------
T ss_pred CCCCeEEEEeCCCCCccCCC
Confidence 99999999999998876543
No 102
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-28 Score=228.14 Aligned_cols=250 Identities=13% Similarity=0.066 Sum_probs=180.4
Q ss_pred CcccccC---ceEEEeecccceeEeeEEe-------eecCC--cccceEEEEEccC----CceEEEecCCCeEEEEeecc
Q psy8895 1 VWDLATG---KLKLSLTGHVGSVRGLTVI-------RHYHG--HLSSVNTISLHPT----IDVLITAGRDSTARVWDVRT 64 (479)
Q Consensus 1 ~Wd~~~~---~~~~~~~g~~~~v~~~~~~-------~~~~g--H~~~V~~l~~sp~----g~~laSgs~D~~vriWd~~t 64 (479)
+|+..++ ++++++.+|..+|-.+.++ ..-.| |.+.|++|+|+|| +.++++++.+ +++|++.+
T Consensus 67 lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~ 144 (356)
T 2w18_A 67 LWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK 144 (356)
T ss_dssp EEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT
T ss_pred EcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCC
Confidence 5888888 8899999999888876532 22223 5679999999999 9999999855 88999999
Q ss_pred cceEee-ecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchh
Q psy8895 65 KANVYT-LTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQ 143 (479)
Q Consensus 65 ~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 143 (479)
++.+.+ ..+|...|..+.+.++..
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~------------------------------------------------------- 169 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGG------------------------------------------------------- 169 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSC-------------------------------------------------------
T ss_pred CcEEEecccCCCCcEEEEEECCCCc-------------------------------------------------------
Confidence 888777 467776665555432110
Q ss_pred hhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEE
Q psy8895 144 EVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVR 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 223 (479)
....+.+|...+.
T Consensus 170 -------------------------------------------------------------------~~~s~~~~~~~v~ 182 (356)
T 2w18_A 170 -------------------------------------------------------------------GKENQFLMPPEET 182 (356)
T ss_dssp -------------------------------------------------------------------EEEEEEECCCSSC
T ss_pred -------------------------------------------------------------------eeeeeccCCCcee
Confidence 0112335677778
Q ss_pred EEEEcC---CCcEEEEEeCCCeEEEEECCCCceEEEEecCCc---CEEEEEEcCCCCEE------------EEEECCCcE
Q psy8895 224 CVAVEP---GNEWFATGSADKIIKVWDLATGKLKLSLTGHVG---SVRGLTVSPRHPYL------------FSCGDDRTV 285 (479)
Q Consensus 224 ~~~~~~---~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l------------~s~~~d~~i 285 (479)
.++|++ ++++|+||+.|++|||||+++|+++.++.+|.. .+.+++|+|++.++ ++|+.|++|
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 888888 779999999999999999999999999987643 67788999999876 567889999
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS--RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK 363 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~ 363 (479)
++||..+++... +..+.+ |++. .++.+.. ....+++|+.|++|+|||+.+++
T Consensus 263 klWd~~tgk~l~----------v~~~~~-p~Gh~~~~lsg~~---------------sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 263 IVINPKTTLSVG----------VMLYCL-PPGQAGRFLEGDV---------------KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEEETTTTEEEE----------EEEECC-CTTCCCCEEEEEE---------------ETTEEEEEETTSCEEEEETTTCS
T ss_pred EEEECCCCEEEE----------EEEeec-cCCCcceeEcccc---------------CCCEEEEEcCCCcEEEEECCCCc
Confidence 999987665321 111111 2221 0111111 13457899999999999999999
Q ss_pred eEEEEccCCCceE-EEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895 364 SLCTLTNHKKSVR-SVALHPTLYMFASASPDN-IKQWKC 400 (479)
Q Consensus 364 ~~~~~~~h~~~v~-~i~~~~~~~~l~s~s~d~-i~~w~~ 400 (479)
.+.++++|...+. +++|+|++++|++++.|+ |++||.
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999987655 689999999999999885 999985
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.1e-30 Score=251.41 Aligned_cols=226 Identities=10% Similarity=0.093 Sum_probs=183.4
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
...|.+.|.+++|+|++++|++|+.|+.|++||+.++ +....+.+|...|.+++|+|++.+|++++.|++|++||++.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999988 67778899999999999999999999999999999999987
Q ss_pred CC-cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEeC
Q psy8895 293 NK-APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGSH 350 (479)
Q Consensus 293 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs~ 350 (479)
.+ .........+...+.++.|+|++..+++++.|+.|++|+...... ++...+++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 65 111111234677899999999999999999999999999765320 23457999999
Q ss_pred CCcEEEEECC------------------CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE----Ee
Q psy8895 351 DCTIRLWDLA------------------AGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF----IQ 407 (479)
Q Consensus 351 d~~v~iwd~~------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~----~~ 407 (479)
|++|++||++ .++++..+ +|...|++++|+|++.+|++++.| .|++||..+++. +.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 9999999985 34556666 899999999999999999988877 499999998887 78
Q ss_pred eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895 408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~ 442 (479)
.+.+|...|.+++|+|++ +|++|+.|+.+ +|+..
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 899999999999999999 77777766555 66654
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.6e-29 Score=245.36 Aligned_cols=220 Identities=13% Similarity=0.159 Sum_probs=135.8
Q ss_pred ecCCCccEEEEEEcC--------CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcE
Q psy8895 215 ISGHLGWVRCVAVEP--------GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTV 285 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~--------~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i 285 (479)
+.||.+.|.+++|+| |+++|||||.|++|+|||++++.....+.+|...+.+++|+|++. +|++++.|++|
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence 347888899999887 789999999999999999999888888888999999999999875 78999999999
Q ss_pred EEEECCCCCcccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895 286 KCWDLEYNKAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADK---TVKLYKEDDSATEESHPVITGSHDCTIRLWDLA 360 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~ 360 (479)
++||+++.+........ .....+......+............ .+.++ ..+...+++++.|+++++||+.
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~------~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI------GSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE------TTTTCEEEEECTTSEEEEEEC-
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee------cCCCCEEEEEeCCCCEEEEECc
Confidence 99999876543221110 0111111221111111111111111 11111 1123445566666666666665
Q ss_pred CCeeEEEEccCCCceEEE------------------EEeC--CCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEE
Q psy8895 361 AGKSLCTLTNHKKSVRSV------------------ALHP--TLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSI 419 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~i------------------~~~~--~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l 419 (479)
.++....+..|...+..+ .++| ++.++++++.| .|++||..+++....+.+|...|.++
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv 365 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF 365 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE
Confidence 554444444443333322 2333 34566777776 49999999999888888899999999
Q ss_pred EEcCCC-EEEEEeCCCcEEEEec
Q psy8895 420 CVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 420 ~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
+|+||| +||++++|| +.+|.+
T Consensus 366 afspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 366 CWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECTTSSEEEEEESSE-EEEEEE
T ss_pred EEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999 899988766 555554
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.7e-28 Score=232.48 Aligned_cols=187 Identities=15% Similarity=0.188 Sum_probs=141.7
Q ss_pred EEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-CcccCCCCC
Q psy8895 225 VAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN-KAPVQPGSM 302 (479)
Q Consensus 225 ~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 302 (479)
+++.++++.+ ++++.|++|++||+.+++.+..+. |...|.+++++++. ++.+ .|+.|++||+... +.....
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~--- 136 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDD--- 136 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCC---
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEe---
Confidence 3444555555 567788999999999999988887 66799999999874 3333 5789999999865 332211
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe---------------e-EE
Q psy8895 303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK---------------S-LC 366 (479)
Q Consensus 303 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---------------~-~~ 366 (479)
.. ....+.+++ ..++. .+|+.||+|++||+++++ + +.
T Consensus 137 ~~--~~~~~~~s~--~~la~-----------------------~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 137 IR--FGGVCEFSN--GLLVY-----------------------SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp EE--EEEEEEEET--TEEEE-----------------------EESSCTTCEEEEECCC------------------CCE
T ss_pred cc--CCceEEEEc--cEEEE-----------------------eCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 00 112222333 22211 115677888888887654 2 67
Q ss_pred EEccCCCceEEEEEeCCCcEEEEEcCC-c-EEEEeCCCCeEEeeec-C-CcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895 367 TLTNHKKSVRSVALHPTLYMFASASPD-N-IKQWKCPEGKFIQNLP-G-HNAIINSICVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d-~-i~~w~~~~~~~~~~~~-~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
.+.+|...|++++|+|++.+|++++.| . |++||..+++.+..+. + |...|.+++|+|++ +|++++.|++|++||+
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 889999999999999999999999887 5 9999999999999998 6 99999999999998 8999999999999999
Q ss_pred CCCe
Q psy8895 442 RTGY 445 (479)
Q Consensus 442 ~~~~ 445 (479)
+++.
T Consensus 270 ~~~~ 273 (355)
T 3vu4_A 270 FNDQ 273 (355)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8653
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.9e-29 Score=244.15 Aligned_cols=254 Identities=21% Similarity=0.288 Sum_probs=197.5
Q ss_pred eeecCCcccceEEEEEcc-CCceEEEecCCCeEEEEeeccc-------ceEeeecccccceEEEEecCCCCccccceEEe
Q psy8895 26 IRHYHGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRTK-------ANVYTLTGHTNTIASVVTQASEPQVGTKTVLL 97 (479)
Q Consensus 26 ~~~~~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 97 (479)
+..+.+|.++|.+++|+| ++++||||+.|++|+|||+.++ +.+..+.+|...|.++.|.++... .++
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~- 148 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN----VLL- 148 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT----EEE-
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC----EEE-
Confidence 345779999999999999 8999999999999999999988 567889999999999999765321 111
Q ss_pred ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895 98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN 177 (479)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
+...++.+++|++...
T Consensus 149 ---------------------s~~~dg~i~iwd~~~~------------------------------------------- 164 (402)
T 2aq5_A 149 ---------------------SAGCDNVILVWDVGTG------------------------------------------- 164 (402)
T ss_dssp ---------------------EEETTSCEEEEETTTT-------------------------------------------
T ss_pred ---------------------EEcCCCEEEEEECCCC-------------------------------------------
Confidence 1224466777765311
Q ss_pred ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEe--cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE
Q psy8895 178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVI--SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL 255 (479)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~ 255 (479)
+....+ .+|.+.|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus 165 --------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 165 --------------------------------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp --------------------------------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 011233 5688999999999999999999999999999999999988
Q ss_pred EE-ecCCcC-EEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895 256 SL-TGHVGS-VRGLTVSPRHPYLFSC---GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330 (479)
Q Consensus 256 ~~-~~h~~~-v~~v~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 330 (479)
.+ .+|.+. +.+++|+|++.+++++ +.|+.|++||++............+...+.++.|+|++..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------- 283 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY--------- 283 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE---------
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE---------
Confidence 88 788876 8999999999999988 799999999998765432222234556788999999887664
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EEEEcc--CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE
Q psy8895 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LCTLTN--HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF 405 (479)
Q Consensus 331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~ 405 (479)
++|+.|+.|++||+.++++ +..+.. |...|++++|+|++.++++ +++.+++|++.+++.
T Consensus 284 ---------------~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 ---------------LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC 345 (402)
T ss_dssp ---------------EEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred ---------------EEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence 3455677888888887763 444443 5689999999999988764 344699999877654
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5.3e-28 Score=236.83 Aligned_cols=207 Identities=17% Similarity=0.304 Sum_probs=172.4
Q ss_pred ecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcE
Q psy8895 215 ISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTV 285 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i 285 (479)
+.+|.+.|.+++|+| ++++|++|+.|+.|++||+.++ +....+.+|...|.+++|+|++ .++++++.|+.|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 357899999999999 9999999999999999999987 5678899999999999999998 699999999999
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL 365 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~ 365 (479)
++||+++.+.........+...+.++.|+|++.. +++++.|+.|++||+++++.+
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-------------------------ICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC-------------------------EEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCCCE-------------------------EEEEecCCcEEEEeCCCCcee
Confidence 9999987765433211345678999999987665 456677888899999999998
Q ss_pred EEE-ccCCCc-eEEEEEeCCCcEEEEE---cCC-cEEEEeCCCCeE-Eeee-cCCcceEEEEEEcCCC-EEE-EEeCCCc
Q psy8895 366 CTL-TNHKKS-VRSVALHPTLYMFASA---SPD-NIKQWKCPEGKF-IQNL-PGHNAIINSICVNNEG-VLV-SGADNGT 435 (479)
Q Consensus 366 ~~~-~~h~~~-v~~i~~~~~~~~l~s~---s~d-~i~~w~~~~~~~-~~~~-~~h~~~v~~l~~~~~~-~l~-sg~~dg~ 435 (479)
..+ ..|.+. +.++.|+|++.+++++ +.+ .+++||..+++. .... ..|...+.+++++|++ .|+ +|+.||.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 888 688776 8999999999999998 555 599999987654 2222 3567789999999998 664 6668999
Q ss_pred EEEEecCCCeE
Q psy8895 436 MCFWDWRTGYN 446 (479)
Q Consensus 436 i~lWd~~~~~~ 446 (479)
|++||+.+++.
T Consensus 292 i~i~d~~~~~~ 302 (402)
T 2aq5_A 292 IRYFEITSEAP 302 (402)
T ss_dssp EEEEEECSSTT
T ss_pred EEEEEecCCCc
Confidence 99999998874
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-27 Score=230.42 Aligned_cols=240 Identities=20% Similarity=0.263 Sum_probs=194.9
Q ss_pred ceeEEEecCCCccEEEEEEcCC---CcEEEEEeCCCeEEEEECCC-CceE-EEEecCCcCEEEEEEcCCCCEEEEEECCC
Q psy8895 209 WKLYRVISGHLGWVRCVAVEPG---NEWFATGSADKIIKVWDLAT-GKLK-LSLTGHVGSVRGLTVSPRHPYLFSCGDDR 283 (479)
Q Consensus 209 ~~~~~~~~~h~~~v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~-~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 283 (479)
.+....+.+|.+.|.+++|+|+ |++|++|+.|+.|++||+.+ +... ..+.+|...|.+++|+|++.+|++++.|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 4455678899999999999999 69999999999999999987 5554 68889999999999999999999999999
Q ss_pred cEEEEECCCCCcccCCCCCCCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCCCCCC--------------CCCeEEE
Q psy8895 284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTF--DNSGSRLITTEADKTVKLYKEDDSATE--------------ESHPVIT 347 (479)
Q Consensus 284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------~~~~l~s 347 (479)
.|++||++..+.... ..+...+.++.| ++++..+++++.|+.|++|+....... ....+++
T Consensus 109 ~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV 185 (368)
T ss_dssp EEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred cEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence 999999987664432 346678999999 889999999999999999998764321 1345788
Q ss_pred EeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCc----EEEEEcCC-cEEEEeCCCC---eEEeeecCCcc---
Q psy8895 348 GSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLY----MFASASPD-NIKQWKCPEG---KFIQNLPGHNA--- 414 (479)
Q Consensus 348 gs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~----~l~s~s~d-~i~~w~~~~~---~~~~~~~~h~~--- 414 (479)
++.|+.+++||++......... .+...+..+++.++.. .+++++.+ .+++|+.... +....+.+|..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 9999999999998765433321 2344556666655443 26666666 5999999887 55677778876
Q ss_pred ---------eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 415 ---------IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 415 ---------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.|.+++++|++ +|++|+.||.|++||+++++.++.++
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 69999999998 99999999999999999998876653
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=236.54 Aligned_cols=208 Identities=22% Similarity=0.306 Sum_probs=172.0
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC--CCceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW 288 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~--~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w 288 (479)
.++.+|.+.|.+++|+|++++|++|+.|+.|++||+. +++....+.+|...|.+++|+++ +.+|++++.|+.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4578999999999999999999999999999999998 55677789999999999999987 8999999999999999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe--e
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK--S 364 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~--~ 364 (479)
|++..+.........+...+.++.|+|+ +..+ ++++.|+.|++||++... .
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------------------------~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-------------------------LVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-------------------------EEEETTSEEEEEECCTTSCCC
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEE-------------------------EEecCCCcEEEEecCCCCcee
Confidence 9987642111112335678999999987 5554 455666667777776652 3
Q ss_pred EEEEccCCCceEEEEEeC-------------CCcEEEEEcCC-cEEEEeCCCCe----EEeeecCCcceEEEEEEcCC--
Q psy8895 365 LCTLTNHKKSVRSVALHP-------------TLYMFASASPD-NIKQWKCPEGK----FIQNLPGHNAIINSICVNNE-- 424 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~-------------~~~~l~s~s~d-~i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~-- 424 (479)
...+..|...|++++|+| ++.++++++.| .|++||+.+++ ....+.+|...|.+++++|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 445678999999999999 68888888877 59999987653 45678899999999999998
Q ss_pred -C-EEEEEeCCCcEEEEecCCCe
Q psy8895 425 -G-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 425 -~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
+ +|++++.||.|++||++++.
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCeEEEEeCCCEEEEEeCCCCC
Confidence 7 89999999999999999874
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=235.03 Aligned_cols=185 Identities=9% Similarity=0.108 Sum_probs=144.8
Q ss_pred EEEEeCCCeEEEEECC---------CCceEEEEe-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895 234 FATGSADKIIKVWDLA---------TGKLKLSLT-GHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 234 l~sgs~d~~i~iWd~~---------~~~~~~~~~-~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 301 (479)
+++++.|++|++|+.. +++.+..+. +|...|.+++|+| ++.++++++.|++|++||+++.+..... .
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~ 166 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH-S 166 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE-C
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e
Confidence 7788888888888554 555454444 6778999999999 9999999999999999999876653221 1
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE-EEEcc-CCCceEEEE
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL-CTLTN-HKKSVRSVA 379 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~-~~~~~-h~~~v~~i~ 379 (479)
..+...+.+++|+|++..+ ++|+.|++|++||+++++.+ ..+.. |...|++++
T Consensus 167 ~~~~~~i~~~~~~pdg~~l-------------------------asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 221 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDSLLL-------------------------ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVK 221 (343)
T ss_dssp CCSSCCCCEEEECTTSCEE-------------------------EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEE
T ss_pred cCCCCceEEEEECCCCCEE-------------------------EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEE
Confidence 2234468899999987654 56677788888888888877 77887 999999999
Q ss_pred EeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC---CcceEE--EEEEcCCC-EEEEEeC-CCcEEEEecCCC
Q psy8895 380 LHPTLYMFASASPDNIKQWKCPEGKFIQNLPG---HNAIIN--SICVNNEG-VLVSGAD-NGTMCFWDWRTG 444 (479)
Q Consensus 380 ~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~---h~~~v~--~l~~~~~~-~l~sg~~-dg~i~lWd~~~~ 444 (479)
|+|++.+|++++++.|++||+.+++....+.. |...+. +++|+|++ +|++++. |+.|++|++.++
T Consensus 222 fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 222 FADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 99999999999988999999998877655543 444444 69999999 8899888 999999999755
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=8.7e-27 Score=230.66 Aligned_cols=220 Identities=25% Similarity=0.453 Sum_probs=190.4
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~ 294 (479)
..+|...|.|+++ +++++++|+.|+.|++||+.+++....+.+|...|.++++ ++.++++|+.||.|++||+++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3467788999887 7899999999999999999999999999999999999998 67799999999999999998776
Q ss_pred cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC------------------CCCeEEEEeCCCcEEE
Q psy8895 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE------------------ESHPVITGSHDCTIRL 356 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------------~~~~l~sgs~d~~v~i 356 (479)
..... ..+...+.++.|++ ..+++++.|+.|++|+....... +...+++|+.|++|++
T Consensus 205 ~~~~~--~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTL--IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEE--CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred EEEEE--cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 54332 24567899999864 59999999999999998654321 2457899999999999
Q ss_pred EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCc
Q psy8895 357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGT 435 (479)
Q Consensus 357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~ 435 (479)
||+++++.+.++.+|...|.+++++ +.++++++.| .|++||..+++.+..+.+|...|.++++ .+.+|++|+.||.
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~ 357 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGK 357 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCc
Confidence 9999999999999999999999995 4567777666 5999999999999999999999999998 3449999999999
Q ss_pred EEEEecCCCe
Q psy8895 436 MCFWDWRTGY 445 (479)
Q Consensus 436 i~lWd~~~~~ 445 (479)
|++||++++.
T Consensus 358 i~vwd~~~~~ 367 (435)
T 1p22_A 358 IKVWDLVAAL 367 (435)
T ss_dssp EEEEEHHHHT
T ss_pred EEEEECCCCC
Confidence 9999998765
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.4e-26 Score=220.06 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=162.1
Q ss_pred cEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcccC
Q psy8895 221 WVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAPVQ 298 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~ 298 (479)
.+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++.+....
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 567889999999775 5556799999999999988877755 468999999999977 6788899999999987654332
Q ss_pred CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE
Q psy8895 299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378 (479)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i 378 (479)
. .....+..+.|+|+++.++ ++++.|++|++||+++++.+..+. +...+.++
T Consensus 154 ~---~~~~~~~~~~~~~dg~~l~------------------------~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~ 205 (391)
T 1l0q_A 154 V---SVGRSPKGIAVTPDGTKVY------------------------VANFDSMSISVIDTVTNSVIDTVK-VEAAPSGI 205 (391)
T ss_dssp E---ECCSSEEEEEECTTSSEEE------------------------EEETTTTEEEEEETTTTEEEEEEE-CSSEEEEE
T ss_pred E---ecCCCcceEEECCCCCEEE------------------------EEeCCCCEEEEEECCCCeEEEEEe-cCCCccce
Confidence 1 1234567888888876553 455667889999999888877775 45678999
Q ss_pred EEeCCCcEEEEEc----CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895 379 ALHPTLYMFASAS----PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRTGYNFQRLQV 452 (479)
Q Consensus 379 ~~~~~~~~l~s~s----~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~~~~~~~~~~ 452 (479)
+|+|++..+++++ ++.+.+||..+++.+..+..|.. +.+++++|++ .| ++++.|+.|++||+++++.++.+.+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 9999998777665 34699999999999888887764 6889999998 55 7888999999999999998887754
Q ss_pred e
Q psy8895 453 R 453 (479)
Q Consensus 453 ~ 453 (479)
.
T Consensus 285 ~ 285 (391)
T 1l0q_A 285 G 285 (391)
T ss_dssp S
T ss_pred C
Confidence 3
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.9e-26 Score=225.57 Aligned_cols=221 Identities=13% Similarity=0.130 Sum_probs=183.7
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCc
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKA 295 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~ 295 (479)
+|.+.|.+++|+++++++++++.|+.|++||+++++....+..|...+.+++|+|+++.++. ++.|+.|++||+++.+.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 57778999999999999999999999999999999999999999999999999999998855 45799999999987654
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEe--------CCCeEEEEeCCCCCC----------------CCC-CeEEEEeC
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTE--------ADKTVKLYKEDDSAT----------------EES-HPVITGSH 350 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~~~~~~~~~~----------------~~~-~~l~sgs~ 350 (479)
.... .....+.++.|+|+++.+++++ .|+.|++|+...... ++. ..+++++.
T Consensus 247 ~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 247 IRKT---DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEC---CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred EEEe---cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence 3322 2234588999999999998887 588999999865321 223 35577789
Q ss_pred CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----------------cEEEEeCCCCeEEeeecCCcc
Q psy8895 351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----------------NIKQWKCPEGKFIQNLPGHNA 414 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----------------~i~~w~~~~~~~~~~~~~h~~ 414 (479)
|+.|++||+.+++.+..+. +...+.+++|+|++..+++++.+ .+.+||..+++.+..+..+ .
T Consensus 324 ~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-N 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-S
T ss_pred CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-C
Confidence 9999999999998888775 67789999999999877666542 6999999999998888764 4
Q ss_pred eEEEEEEcCCC-EEEEEe-CCCcEEEEecC
Q psy8895 415 IINSICVNNEG-VLVSGA-DNGTMCFWDWR 442 (479)
Q Consensus 415 ~v~~l~~~~~~-~l~sg~-~dg~i~lWd~~ 442 (479)
.+.+++++|++ +|++++ .|+.|++|+++
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 68999999998 777666 59999999976
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=5.3e-26 Score=223.97 Aligned_cols=206 Identities=21% Similarity=0.363 Sum_probs=161.4
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP 296 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 296 (479)
+|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...+.+++++ +..+++|+.|+.+++||.......
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 466789999999999999999999999999999999999999999999988875 568999999999999998754432
Q ss_pred cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----eEEEEccCC
Q psy8895 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----SLCTLTNHK 372 (479)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~~~~~~~h~ 372 (479)
... ...+...+..+.+.+++..++++ +.|+.+++||...++ .+.....|.
T Consensus 223 ~~~-~~~h~~~~~~~~~~~~g~~l~s~-------------------------~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 223 VAT-LSGHSQEVCGLRWAPDGRHLASG-------------------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEE-------------------------ETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred eEE-ecccccceeeeeecCCCCeeeee-------------------------eccccceEEeeccccccceeeeeecccC
Confidence 211 12345667888888877766554 455555666655443 345667899
Q ss_pred CceEEEEEeCCC-cEEEE--EcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe--CCCcEEEEecCCCe
Q psy8895 373 KSVRSVALHPTL-YMFAS--ASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA--DNGTMCFWDWRTGY 445 (479)
Q Consensus 373 ~~v~~i~~~~~~-~~l~s--~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~--~dg~i~lWd~~~~~ 445 (479)
..|.+++|+|.. .++++ ++.| .|++||..++++...+..|. .+.++.+++++ .+++++ .|+.|+|||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 999999999964 55554 3455 59999999999998887765 46667777776 666544 79999999999999
Q ss_pred EEEEEE
Q psy8895 446 NFQRLQ 451 (479)
Q Consensus 446 ~~~~~~ 451 (479)
++..++
T Consensus 356 ~v~~l~ 361 (420)
T 4gga_A 356 KVAELK 361 (420)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 888764
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=5.3e-27 Score=223.68 Aligned_cols=219 Identities=23% Similarity=0.311 Sum_probs=167.0
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKC 287 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~ 287 (479)
.+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++ +....+.+|...|.+++|+| ++.+|++++.|+.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 56899999999999999999999999999999999876 45667889999999999999 6899999999999999
Q ss_pred EECCCCCccc-------CCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEE
Q psy8895 288 WDLEYNKAPV-------QPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWD 358 (479)
Q Consensus 288 wd~~~~~~~~-------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd 358 (479)
||++...... ......+...+.++.|+|+ +..+++++.|+.|++|+...........+-.. +..
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~-- 158 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-----MKV-- 158 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-----EES--
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-----ccc--
Confidence 9998653211 0111245677999999988 77777666666666666544322111100000 000
Q ss_pred CCCCeeEEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCeE--EeeecCCcceEEEEEEcCCC-----EE
Q psy8895 359 LAAGKSLCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGKF--IQNLPGHNAIINSICVNNEG-----VL 427 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~-----~l 427 (479)
.......|...+.+++|+|+ +.++++++.+. +.+|+...++. ...+.+|...|.+++++|++ +|
T Consensus 159 -----~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 159 -----LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp -----CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred -----cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 00011257788999999997 88888888876 66677666654 67788999999999999995 79
Q ss_pred EEEeCCCcEEEEecCCC
Q psy8895 428 VSGADNGTMCFWDWRTG 444 (479)
Q Consensus 428 ~sg~~dg~i~lWd~~~~ 444 (479)
++|+.||.|++||++++
T Consensus 234 ~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEETTSCEEEEEEEEC
T ss_pred EEEcCCCeEEEEeCCCC
Confidence 99999999999999876
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.1e-28 Score=235.59 Aligned_cols=176 Identities=11% Similarity=-0.013 Sum_probs=118.6
Q ss_pred CCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEE-------------------------EecCCcCEEEEEEc-
Q psy8895 218 HLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLS-------------------------LTGHVGSVRGLTVS- 270 (479)
Q Consensus 218 h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~-------------------------~~~h~~~v~~v~~~- 270 (479)
|...|.+++|+|++. +|++|+.|++|++||+++++.... ..+|...+.++.|+
T Consensus 185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~ 264 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG 264 (393)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence 556788999999874 799999999999999988754322 24577788899886
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH 350 (479)
Q Consensus 271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~ 350 (479)
+++..+++++.|+++++||+...+..... ..+...+..+.+.++...............+ .......+++|+.
T Consensus 265 ~dg~~l~s~s~d~~i~vwd~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 265 SDGSGILAMCKSGAWLRWNLFANNDYNEI--SDSTMKLGPKNLLPNVQGISLFPSLLGACPH-----PRYMDYFATAHSQ 337 (393)
T ss_dssp TTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC-----SSCTTEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEECccCCCCceE--eeecCccccEEEccccccccccCcceeEEEc-----cCCCCEEEEEECC
Confidence 79999999999999999999765433221 1222334444444443322111111111111 0122345778899
Q ss_pred CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeC
Q psy8895 351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKC 400 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~ 400 (479)
|++|++||+.+++.+..+.+|..+|++++|+|++++||+++++.+.+|.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 99999999999998888888999999999999999999999999888764
No 117
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=4.1e-27 Score=227.31 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=127.2
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EEecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEECC
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFSCGDDR----TVKCWDLE 291 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~i~~wd~~ 291 (479)
|.+.|.+++|+|+|+++++++.| .+++|+..+++... ...+|...|.+++|+|++.++++++.|+ .+++||+.
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 34457789999999999999865 56677777776543 3456888999999999999999998887 68889876
Q ss_pred CCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-
Q psy8895 292 YNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL- 368 (479)
Q Consensus 292 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~- 368 (479)
....... .....+...|.+++|+|+++++ ++|+.|++|+|||+++++++.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l-------------------------asgs~D~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELA-------------------------VLASNDNSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEE-------------------------EEEETTSCEEEEETTTTEEEEEET
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCce-------------------------EEEcCCCEEEEEECCCCcEEEEec
Confidence 5432211 1112355679999999987764 56777888999999999999886
Q ss_pred ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895 369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG 403 (479)
Q Consensus 369 ~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~ 403 (479)
++|...|++++|+||+.+|++++.|+ |++|++++.
T Consensus 309 ~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 309 QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 68999999999999999999999885 999998643
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-26 Score=222.16 Aligned_cols=197 Identities=10% Similarity=0.050 Sum_probs=146.3
Q ss_pred cCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 216 SGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 216 ~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
.+|.+.|.+++|+| +++++++++.|++|++||+++++....... |...|.+++|+|++.++++|+.|+.|++||+++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 36778999999999 999999999999999999999988766644 455899999999999999999999999999988
Q ss_pred CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--
Q psy8895 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-- 370 (479)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-- 370 (479)
.+.........+...|.++.|+|++..+++ ++ |++|++||+++++.+.++..
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s-------------------------~~-~~~v~iwd~~~~~~~~~~~~~~ 255 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVV-------------------------EC-DQTVVCFDLRKDVGTLAYPTYT 255 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEE-------------------------EE-SSBEEEEETTSSTTCBSSCCCB
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEE-------------------------Ee-CCeEEEEEcCCCCcceeecccc
Confidence 765411112236788999999998877654 44 33677777776655444332
Q ss_pred -CCCce--EEEEEeCCCcEEEEEcC-C-cEEEEeCCCCeEEeeecCCcceEEEEEEcC---CC-EEEEEeCCCcEEEEec
Q psy8895 371 -HKKSV--RSVALHPTLYMFASASP-D-NIKQWKCPEGKFIQNLPGHNAIINSICVNN---EG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 371 -h~~~v--~~i~~~~~~~~l~s~s~-d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~---~~-~l~sg~~dg~i~lWd~ 441 (479)
|...+ .+++|+|++.+|++++. + .+++|+..+....... ..+..+++.+ +. .+++++.||.+.++-.
T Consensus 256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 33344 36999999999998765 4 5999998655432222 4566777776 65 7899999999998864
Q ss_pred C
Q psy8895 442 R 442 (479)
Q Consensus 442 ~ 442 (479)
.
T Consensus 332 ~ 332 (343)
T 3lrv_A 332 T 332 (343)
T ss_dssp C
T ss_pred c
Confidence 3
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-26 Score=226.83 Aligned_cols=279 Identities=10% Similarity=0.058 Sum_probs=193.6
Q ss_pred CceEEEeecccceeEeeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCC
Q psy8895 7 GKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS 86 (479)
Q Consensus 7 ~~~~~~~~g~~~~v~~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~ 86 (479)
|+++.+ .+.+..|+.......+.||...|.+++|+|+| .|+++++|+.+.. .+.++ .|.+.|.+++|+++
T Consensus 27 G~~iAS-as~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPd 96 (588)
T 2j04_A 27 GTLYLT-TFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPI 96 (588)
T ss_dssp SCEEEE-CSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSS
T ss_pred CCEEEE-EcCCceeecccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCC
Confidence 444432 34555555555556668999999999999998 5666666654322 23333 46888999999887
Q ss_pred CCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceec
Q psy8895 87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFI 166 (479)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (479)
+... .....+|++++|+...
T Consensus 97 G~~L---------------------------As~s~dg~V~iwd~~~--------------------------------- 116 (588)
T 2j04_A 97 DDWM---------------------------AVLSNNGNVSVFKDNK--------------------------------- 116 (588)
T ss_dssp SSCE---------------------------EEEETTSCEEEEETTE---------------------------------
T ss_pred CCEE---------------------------EEEeCCCcEEEEeCCc---------------------------------
Confidence 5431 1223456777776321
Q ss_pred cccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCC-----ccEEEEEEcCCCcEEEEEeCCC
Q psy8895 167 SCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHL-----GWVRCVAVEPGNEWFATGSADK 241 (479)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~g~~l~sgs~d~ 241 (479)
....+. |. ..|.+++|+|||++|++|+.||
T Consensus 117 --------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 117 --------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp --------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred --------------------------------------------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 000111 22 3588999999999999999999
Q ss_pred eEEEEECCCCce-------EEEE----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc--CCCCCCCCCCe
Q psy8895 242 IIKVWDLATGKL-------KLSL----TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV--QPGSMDSESGI 308 (479)
Q Consensus 242 ~i~iWd~~~~~~-------~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~i 308 (479)
+|+|||+.++.. +.++ .+|...|.+++|+|+| +++++.|+++++||+....... ......+...|
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 999999998853 5666 6788899999999999 8889999999999997655321 00001344678
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE--eCCCcE
Q psy8895 309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL--HPTLYM 386 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~ 386 (479)
.+++|+ ++.+ ++++ +++|++||+..++......+|...|..++| +|++..
T Consensus 230 ~svaFs--g~~L-------------------------ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 230 TDLKIV--DYKV-------------------------VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp CCEEEE--TTEE-------------------------EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred EEEEEE--CCEE-------------------------EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 888887 3444 4444 578889998877764444489999999999 999999
Q ss_pred EEEEcCCcEEEEeCCC------C-----------------eEEeeecCCcceEEEEEEcCCC-EEEEEe
Q psy8895 387 FASASPDNIKQWKCPE------G-----------------KFIQNLPGHNAIINSICVNNEG-VLVSGA 431 (479)
Q Consensus 387 l~s~s~d~i~~w~~~~------~-----------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg~ 431 (479)
++++..++.++|..+. + .....+.+ ...|.+++++||| .+|+++
T Consensus 282 La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 282 LLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp EEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 9999976558887631 1 11112222 4468899999999 777776
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=245.60 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=169.1
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC--CCceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWD 289 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~--~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd 289 (479)
++.+|.+.|.+++|+|++++|++|+.||.|++||+. +++....+.+|.+.|.+++|+|+ +.++++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 567999999999999999999999999999999998 45677789999999999999988 89999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC--eeE
Q psy8895 290 LEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG--KSL 365 (479)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~--~~~ 365 (479)
+++++.........+...|.++.|+|+ +..+ ++|+.|++|++||++.+ ...
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-------------------------~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-------------------------LVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-------------------------EEEETTSEEEEEECCSSSCCCC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEE-------------------------EEEeCCCcEEEEEeecCCCcce
Confidence 987642111112346678999999987 5555 45566666777777655 234
Q ss_pred EEEccCCCceEEEEEeC-------------CCcEEEEEcCC-cEEEEeCCCC----eEEeeecCCcceEEEEEEcCC---
Q psy8895 366 CTLTNHKKSVRSVALHP-------------TLYMFASASPD-NIKQWKCPEG----KFIQNLPGHNAIINSICVNNE--- 424 (479)
Q Consensus 366 ~~~~~h~~~v~~i~~~~-------------~~~~l~s~s~d-~i~~w~~~~~----~~~~~~~~h~~~v~~l~~~~~--- 424 (479)
..+.+|...|.+++|+| ++.++++++.| .|++||..++ .....+.+|...|.+++++|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 45678999999999999 47778888766 5999998776 566788999999999999999
Q ss_pred C-EEEEEeCCCcEEEEecCCCe
Q psy8895 425 G-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 425 ~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
+ +|++|+.||+|++||+.++.
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSS
T ss_pred CCEEEEEecCCEEEEecCCCCC
Confidence 7 89999999999999999864
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-25 Score=220.05 Aligned_cols=229 Identities=12% Similarity=0.113 Sum_probs=185.2
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEec-------------------------------------
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTG------------------------------------- 259 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~------------------------------------- 259 (479)
.++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 467899999999977666 47899999999998 5555543
Q ss_pred -----------------CCcCEEEEEEcCCCCEE-EEEECCCcEEEEECC--CCCcccCCCCCCCCCCeEEEEEeCCCCE
Q psy8895 260 -----------------HVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLE--YNKAPVQPGSMDSESGIFSMTFDNSGSR 319 (479)
Q Consensus 260 -----------------h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (479)
|.+.|.+++|+|++++| ++++.|+.|++||+. .++.........+...+.++.|+|++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999998 5544332211234567999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCC---------------------CC---CCeEEEEeCCCcEEEEECCCCeeEEE-EccCCCc
Q psy8895 320 LITTEADKTVKLYKEDDSAT---------------------EE---SHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKKS 374 (479)
Q Consensus 320 l~~~~~d~~i~~~~~~~~~~---------------------~~---~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~~ 374 (479)
+++++.++.+.+|+...... ++ ...+++|+.|++|++||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 99999999999998643211 23 45899999999999999999988887 5589999
Q ss_pred eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-------------------------cceEEEEEEcCCC-EE
Q psy8895 375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-------------------------NAIINSICVNNEG-VL 427 (479)
Q Consensus 375 v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-------------------------~~~v~~l~~~~~~-~l 427 (479)
|++++|+ ++.+|++++.|. |++||+.+++.+..+..+ ...|.+++++|++ +|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999999 999999998875 999999999988777532 3568999999988 78
Q ss_pred EEEe-CCCcEEEEec--CCC---eEEEEE
Q psy8895 428 VSGA-DNGTMCFWDW--RTG---YNFQRL 450 (479)
Q Consensus 428 ~sg~-~dg~i~lWd~--~~~---~~~~~~ 450 (479)
++++ .|+.|++||+ .++ ..++.+
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~ 351 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQII 351 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccEe
Confidence 8888 8999999999 666 444444
No 122
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=8.7e-26 Score=223.85 Aligned_cols=210 Identities=14% Similarity=0.269 Sum_probs=163.5
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEEecCC------------cCEEEEEEcCCC
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-----------LKLSLTGHV------------GSVRGLTVSPRH 273 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-----------~~~~~~~h~------------~~v~~v~~~~~~ 273 (479)
.|.+.|.+++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 477889998 889999999998
Q ss_pred --CEEEEEECCCcEEEEECCCCCcccC--------------------------------------CCCCCCCCCeEEEEE
Q psy8895 274 --PYLFSCGDDRTVKCWDLEYNKAPVQ--------------------------------------PGSMDSESGIFSMTF 313 (479)
Q Consensus 274 --~~l~s~~~d~~i~~wd~~~~~~~~~--------------------------------------~~~~~~~~~i~~~~~ 313 (479)
..+++++.|+.|++||+........ .....+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7899999999999999865322100 001234455666666
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEE-------EEccCCCceEEEEEeCCC-
Q psy8895 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLC-------TLTNHKKSVRSVALHPTL- 384 (479)
Q Consensus 314 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~- 384 (479)
+|++..+ ++| .|++|++||++. ++.+. .+.+|...|++++|+|++
T Consensus 186 ~~~~~~l-------------------------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 186 NSDYETY-------------------------LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp CTTSSEE-------------------------EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred cCCCCEE-------------------------EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence 6665554 444 466666777663 33333 356799999999999998
Q ss_pred cEEEEEcCCc-EEEEeCCCCeE----EeeecCCcc------------eEEEEEEcCCC-EEEEEeCCCcEEEEecCC-Ce
Q psy8895 385 YMFASASPDN-IKQWKCPEGKF----IQNLPGHNA------------IINSICVNNEG-VLVSGADNGTMCFWDWRT-GY 445 (479)
Q Consensus 385 ~~l~s~s~d~-i~~w~~~~~~~----~~~~~~h~~------------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~-~~ 445 (479)
.+|++++.|. |++||+.+++. ...+.+|.. .|.+++|+|++ +|++++. +.|++||+++ +.
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence 8898888775 99999998886 678888876 89999999999 8888888 9999999997 77
Q ss_pred EEEEEEEe
Q psy8895 446 NFQRLQVR 453 (479)
Q Consensus 446 ~~~~~~~~ 453 (479)
++..++..
T Consensus 319 ~~~~~~~~ 326 (447)
T 3dw8_B 319 PVETYQVH 326 (447)
T ss_dssp CSCCEESC
T ss_pred ccceeecc
Confidence 77666543
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.1e-23 Score=213.45 Aligned_cols=310 Identities=14% Similarity=0.045 Sum_probs=226.4
Q ss_pred EEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeeccc
Q psy8895 40 SLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPS 119 (479)
Q Consensus 40 ~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (479)
+|+|++.++++++.|++|++||..+++.+.++..+.. +..+.|+++... +++.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~--------------l~v~~----------- 197 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRY--------------LLVIG----------- 197 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCE--------------EEEEE-----------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCE--------------EEEEC-----------
Confidence 4899999999999999999999999999999983333 667777665432 11111
Q ss_pred ccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCC
Q psy8895 120 LLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALP 199 (479)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (479)
.++++.+|+....
T Consensus 198 --~d~~V~v~D~~~~----------------------------------------------------------------- 210 (543)
T 1nir_A 198 --RDARIDMIDLWAK----------------------------------------------------------------- 210 (543)
T ss_dssp --TTSEEEEEETTSS-----------------------------------------------------------------
T ss_pred --CCCeEEEEECcCC-----------------------------------------------------------------
Confidence 1144555543100
Q ss_pred CCCCCCCCcceeEEEecCCCccEEEEEEcC----CCcEEEEEeC-CCeEEEEECCCCceEEEEecC----------C-cC
Q psy8895 200 MPKPQWHAPWKLYRVISGHLGWVRCVAVEP----GNEWFATGSA-DKIIKVWDLATGKLKLSLTGH----------V-GS 263 (479)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h----------~-~~ 263 (479)
..+....+. +......++|+| +|+++++++. +++|.+||..+++++..+..+ . ..
T Consensus 211 --------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 211 --------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp --------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred --------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 001111222 234568899999 9999998884 899999999999998887652 2 36
Q ss_pred EEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCC--
Q psy8895 264 VRGLTVSPRHPY-LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSAT-- 339 (479)
Q Consensus 264 v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~-- 339 (479)
+..+.++|+++. +++...++.|.+||+...+.... ........+..+.|+|+++++++++ .+++|.+||......
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 889999997765 45667889999999976543220 0112234466789999999876554 688999999765321
Q ss_pred ------------------CC-CCeEEEEe-CCCcEEEEECCC-------CeeEEEEccCCCceEEEEEeCCCcEEEEEc-
Q psy8895 340 ------------------EE-SHPVITGS-HDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVALHPTLYMFASAS- 391 (479)
Q Consensus 340 ------------------~~-~~~l~sgs-~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s- 391 (479)
++ ...+++++ .|++|.+||+.+ .+.+.+++.|...+..++++|+++.|.+++
T Consensus 361 ~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 361 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred eeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 11 23356665 689999999998 889999999988889999999999999886
Q ss_pred -------CCcEEEEeCCCCeEE-eee--------cCCcceEEEEEEcCCC-EEEEE-----eCCCcEEEEecCCCeEEEE
Q psy8895 392 -------PDNIKQWKCPEGKFI-QNL--------PGHNAIINSICVNNEG-VLVSG-----ADNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 392 -------~d~i~~w~~~~~~~~-~~~--------~~h~~~v~~l~~~~~~-~l~sg-----~~dg~i~lWd~~~~~~~~~ 449 (479)
++.|.+||..+++.. ..+ ..+...+..+.|+++| .|+.+ +.|+.|.+||.+|++.+++
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 347999999998876 443 4567789999999999 55433 2589999999999998876
Q ss_pred EEE
Q psy8895 450 LQV 452 (479)
Q Consensus 450 ~~~ 452 (479)
++.
T Consensus 521 i~~ 523 (543)
T 1nir_A 521 VKD 523 (543)
T ss_dssp ECC
T ss_pred ecC
Confidence 653
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1e-24 Score=215.48 Aligned_cols=206 Identities=20% Similarity=0.301 Sum_probs=170.8
Q ss_pred EecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCC----------CceEEEEecCCcCEEEEEEcCCCC-EEEEEEC
Q psy8895 214 VISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT----------GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGD 281 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~ 281 (479)
...+|.+.|.+++|+|+ +.+|++++.||.|++||+.+ ......+.+|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 44579999999999997 78999999999999999986 567788899999999999999988 9999999
Q ss_pred CCcEEEEECCCCCccc-----CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEE
Q psy8895 282 DRTVKCWDLEYNKAPV-----QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRL 356 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~i 356 (479)
||.|++||+....... ......+...+.++.|+|.+. ..+++++.|+.|++
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------------------~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE------------------------SLFGSVADDQKLMI 258 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT------------------------TEEEEEETTSEEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC------------------------CEEEEEeCCCeEEE
Confidence 9999999998633210 111124567789999988422 23566777788888
Q ss_pred EECCCC---eeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCC--EEE
Q psy8895 357 WDLAAG---KSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEG--VLV 428 (479)
Q Consensus 357 wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~--~l~ 428 (479)
||++++ +++..+..|...|++++|+|++. ++++++.| .|++||+.+ ++.+..+.+|...|.+++++|++ +|+
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 888776 56777888999999999999876 78787776 499999987 56788889999999999999987 699
Q ss_pred EEeCCCcEEEEecCC
Q psy8895 429 SGADNGTMCFWDWRT 443 (479)
Q Consensus 429 sg~~dg~i~lWd~~~ 443 (479)
+++.|++|++||+.+
T Consensus 339 s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEETTSCCEEEEGGG
T ss_pred EEeCCCcEEEEeCCC
Confidence 999999999999987
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=2.2e-23 Score=200.36 Aligned_cols=195 Identities=12% Similarity=0.003 Sum_probs=143.1
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEE--EECCCcEEEEECCCCC
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFS--CGDDRTVKCWDLEYNK 294 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~d~~i~~wd~~~~~ 294 (479)
|...|.+++++++. ++.+ .|+.|++||+.++ +.+..+.. +...+++++ .+++. |+.||.|++||++...
T Consensus 99 ~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 99 VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence 45678999998764 3333 3789999999988 65555443 445566777 45655 5789999999998644
Q ss_pred ccc--------------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCc-EEEEEC
Q psy8895 295 APV--------------QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCT-IRLWDL 359 (479)
Q Consensus 295 ~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~-v~iwd~ 359 (479)
... ......+...|.+++|+|++.++ ++|+.|++ |++||+
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l-------------------------~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV-------------------------ATCSQDGTIIRVFKT 225 (355)
T ss_dssp ----------------CCEEECCCSSCEEEEEECTTSSEE-------------------------EEEETTCSEEEEEET
T ss_pred ccccccccccccccCcccEEEEccCCceEEEEECCCCCEE-------------------------EEEeCCCCEEEEEEC
Confidence 100 01113467789999999987664 56777888 999999
Q ss_pred CCCeeEEEEc-c-CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE--EeeecC---------------------Cc
Q psy8895 360 AAGKSLCTLT-N-HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF--IQNLPG---------------------HN 413 (479)
Q Consensus 360 ~~~~~~~~~~-~-h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~--~~~~~~---------------------h~ 413 (479)
++++++.++. + |...|++++|+|++.+|++++.|. +++||+.++.. ...+.+ +.
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 9999999998 5 999999999999999999998885 99999876532 111111 11
Q ss_pred ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895 414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
.....+++++++ .|++++.||.+++|++..++
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 223567899998 89999999999999987654
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=4e-22 Score=193.98 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=161.1
Q ss_pred EEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCC
Q psy8895 222 VRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 222 v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~ 299 (479)
+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++. ++.|+.|++||+++++.....
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 5788999999876 677799999999999999988887665 8999999999998765 456799999999876543322
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE
Q psy8895 300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA 379 (479)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~ 379 (479)
.....+.++.|+|+++.++ ++++.|+.|++||+.+++.+..+..+ ..+..++
T Consensus 113 ---~~~~~~~~~~~s~dg~~l~------------------------~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 113 ---KTGKSPLGLALSPDGKKLY------------------------VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA 164 (391)
T ss_dssp ---ECSSSEEEEEECTTSSEEE------------------------EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred ---eCCCCcceEEECCCCCEEE------------------------EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence 2234678888988877652 45566788999999998888888765 4569999
Q ss_pred EeCCCcEE-EEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe---CCCcEEEEecCCCeEEEEEEE
Q psy8895 380 LHPTLYMF-ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA---DNGTMCFWDWRTGYNFQRLQV 452 (479)
Q Consensus 380 ~~~~~~~l-~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~---~dg~i~lWd~~~~~~~~~~~~ 452 (479)
|+|++..+ ++++.+ .+.+||..+++....+.. ...+.+++++|++ +|++++ .|+.|++||+++++.+..++.
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 99999766 566655 599999999988877764 4578899999998 777776 689999999999988776643
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.7e-22 Score=198.40 Aligned_cols=222 Identities=13% Similarity=0.106 Sum_probs=167.2
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCc--EE
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRT--VK 286 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--i~ 286 (479)
+.+.+|.+.+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+||++.|+ +++.|+. |+
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 34667889999999999999999999885 9999999998875 5677888999999999999887 6666654 99
Q ss_pred EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895 287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL 365 (479)
Q Consensus 287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~ 365 (479)
+||+++++.... ..+...+.++.|+|+++.++.++.+ +. ..|++||+.+++.
T Consensus 251 ~~d~~~~~~~~l---~~~~~~~~~~~~spdg~~l~~~s~~~g~-----------------------~~i~~~d~~~~~~- 303 (415)
T 2hqs_A 251 VMDLASGQIRQV---TDGRSNNTEPTWFPDSQNLAFTSDQAGR-----------------------PQVYKVNINGGAP- 303 (415)
T ss_dssp EEETTTCCEEEC---CCCSSCEEEEEECTTSSEEEEEECTTSS-----------------------CEEEEEETTSSCC-
T ss_pred EEECCCCCEEeC---cCCCCcccceEECCCCCEEEEEECCCCC-----------------------cEEEEEECCCCCE-
Confidence 999987654321 2344678899999999887765532 21 1466678776653
Q ss_pred EEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC---cEE
Q psy8895 366 CTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG---TMC 437 (479)
Q Consensus 366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg---~i~ 437 (479)
..+..+...+.+++|+|++.+++.++.+ .|.+||..+++.. .+..|. .+.+++|+|++ +|++++.|+ .|.
T Consensus 304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 3455677789999999999988877643 5999999988764 455564 78999999999 788888777 799
Q ss_pred EEecCCCeEEEEEEEeEecCCCCCceEEeeehhhhc
Q psy8895 438 FWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYL 473 (479)
Q Consensus 438 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (479)
+||+.++. . ..++.....+.++|+++.
T Consensus 382 ~~d~~g~~-~--------~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 382 LVSTDGRF-K--------ARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEETTSCC-E--------EECCCSSSEEEEEEECCC
T ss_pred EEECCCCc-E--------EEeeCCCCCCcCCccccc
Confidence 99987542 2 223344445666666654
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=7.6e-22 Score=194.73 Aligned_cols=233 Identities=12% Similarity=0.095 Sum_probs=186.0
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-----EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w 288 (479)
.+..+ ..+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++|
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 34333 345689999988888899899999999999998876 345788899999999999999999999999999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCC----------------CCCCeEEEEe--
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT-TEADKTVKLYKEDDSAT----------------EESHPVITGS-- 349 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs-- 349 (479)
|+++.+..... ..+...+.+++|+|++..+++ ++.++.|.+|+...... ++...+++++
T Consensus 197 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 197 DLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp ETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred ECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence 99876544322 134567899999999998854 45799999999765321 2345677777
Q ss_pred ------CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895 350 ------HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICV 421 (479)
Q Consensus 350 ------~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~ 421 (479)
.|+.|++||+.+++.+..+ .|...+..++|+|++. ++++++.+ .+.+||..+++....+. +...+.++++
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 5889999999998877766 4566889999999985 55665655 59999999998887776 6677899999
Q ss_pred cCCC-EEEEEeC---------------CCcEEEEecCCCeEEEEEE
Q psy8895 422 NNEG-VLVSGAD---------------NGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 422 ~~~~-~l~sg~~---------------dg~i~lWd~~~~~~~~~~~ 451 (479)
+|++ .|++++. ||.|++||..+++.++.+.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence 9998 6777765 5799999999998877664
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=2.1e-20 Score=183.47 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=138.4
Q ss_pred ecCCCccEEEEEEcCCCcEEE-EEeCCCe--EEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC--cEEEE
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFA-TGSADKI--IKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR--TVKCW 288 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~-sgs~d~~--i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~i~~w 288 (479)
+.+|.+.+.+++|+|||++|+ +++.|+. |.+||+.+++. ..+..|...+.+++|+||++.|+.++. ++ .|.+|
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 445677899999999999887 6766654 99999998876 567788889999999999999988776 44 67777
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL 368 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~ 368 (479)
|+.+++.... ..+...+..+.|+|++++++.++.+. .+..|++||+.+++. ..+
T Consensus 297 d~~~~~~~~l---~~~~~~~~~~~~spdG~~l~~~~~~~----------------------g~~~i~~~d~~~~~~-~~l 350 (415)
T 2hqs_A 297 NINGGAPQRI---TWEGSQNQDADVSSDGKFMVMVSSNG----------------------GQQHIAKQDLATGGV-QVL 350 (415)
T ss_dssp ETTSSCCEEC---CCSSSEEEEEEECTTSSEEEEEEECS----------------------SCEEEEEEETTTCCE-EEC
T ss_pred ECCCCCEEEE---ecCCCcccCeEECCCCCEEEEEECcC----------------------CceEEEEEECCCCCE-EEe
Confidence 8876543221 12334677899999998877654321 135788899988766 445
Q ss_pred ccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895 369 TNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNE 424 (479)
Q Consensus 369 ~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~ 424 (479)
..+. .+.+++|+|++..++.++.+ .+.+||.. +.....+.+|.+.|.+++++|.
T Consensus 351 ~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 351 SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 5554 89999999999987776644 38899986 5667788999999999999985
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.6e-20 Score=205.59 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=173.9
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~ 291 (479)
..+.+|.+.+.++.|+++ .++++++.|+.++||.+.. +.....+..|. .+...+|+|||+.++.+ .++.|.+||++
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 345789999999999988 7777888899999998753 33445555555 35677999999988887 58999999984
Q ss_pred CCCcccCCCCC---------CCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCC-----C-----------CCCeE
Q psy8895 292 YNKAPVQPGSM---------DSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSAT-----E-----------ESHPV 345 (479)
Q Consensus 292 ~~~~~~~~~~~---------~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-----~-----------~~~~l 345 (479)
..+.. ..... .+...+..+.|+ |+++.++.++ ++.+.+|+...... . ++..+
T Consensus 274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l 351 (1045)
T 1k32_A 274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAF 351 (1045)
T ss_dssp TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEE
T ss_pred ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeE
Confidence 33222 11000 012257889999 9999888887 77888888654321 0 22457
Q ss_pred EEEeCCCcEE-EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895 346 ITGSHDCTIR-LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNN 423 (479)
Q Consensus 346 ~sgs~d~~v~-iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~ 423 (479)
+.++.+..+. +||+..++.. .+.+|...+..++|+|+++.+++++.+ .+.+||..+++......+|.+.+..++|+|
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred EEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 7777788888 8999876543 444788899999999999999888877 599999999998887878999999999999
Q ss_pred CC-EEEEEeCCC----------cEEEEecCCCe
Q psy8895 424 EG-VLVSGADNG----------TMCFWDWRTGY 445 (479)
Q Consensus 424 ~~-~l~sg~~dg----------~i~lWd~~~~~ 445 (479)
|+ +|++++.++ .|++||+.+++
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99 788777654 89999999886
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1.8e-20 Score=198.05 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=161.7
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC----------------EEEEEEcCCCCEEEE
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS----------------VRGLTVSPRHPYLFS 278 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~~l~s 278 (479)
+..|...+.+++|+|||++|+.++. +.|.+||+.+++.......+... +..++|+|||++|++
T Consensus 147 l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~ 225 (741)
T 2ecf_A 147 LTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY 225 (741)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred cccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence 4457778999999999999999884 69999999988766544444332 377999999999998
Q ss_pred EECCC---------------------------------cEEEEECCC-CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895 279 CGDDR---------------------------------TVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324 (479)
Q Consensus 279 ~~~d~---------------------------------~i~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 324 (479)
++.|+ .|.+||+++ ++.........+...+..+.| |+++.++.++
T Consensus 226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 87765 788899877 554322111124456889999 9999988765
Q ss_pred C-----CCeEEEEeCCCCC---------------------CCCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCceEE
Q psy8895 325 A-----DKTVKLYKEDDSA---------------------TEESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 325 ~-----d~~i~~~~~~~~~---------------------~~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v~~ 377 (479)
. +..|.+|+..... .+++..+++++.|+.++||.+. .++ ...+..|...|..
T Consensus 305 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~ 383 (741)
T 2ecf_A 305 QSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE 383 (741)
T ss_dssp EETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred ecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence 3 4568888865421 1234567888899988888776 344 7778788888888
Q ss_pred E-EEeCCCcEE-EEEcCC---cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCC-EEEEEeCC----CcEEEEecCCC
Q psy8895 378 V-ALHPTLYMF-ASASPD---NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEG-VLVSGADN----GTMCFWDWRTG 444 (479)
Q Consensus 378 i-~~~~~~~~l-~s~s~d---~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d----g~i~lWd~~~~ 444 (479)
+ .|+|++..+ ++++.+ .+.+|+... +.....+.. ...+..+.|+||+ .|+....+ ..+.+|+...+
T Consensus 384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 7 599999755 455554 588998754 554556655 5567899999999 55544332 46788887543
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=1.6e-19 Score=182.80 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=182.0
Q ss_pred eeEEEec-CCCccEEEEEEcCCCcEEEEEeCCCeEEEEEC--CCCceEEEEecCCcCEEEEEEcC----CCCEEEEEE-C
Q psy8895 210 KLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDL--ATGKLKLSLTGHVGSVRGLTVSP----RHPYLFSCG-D 281 (479)
Q Consensus 210 ~~~~~~~-~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~--~~~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~~-~ 281 (479)
+...++. +|. +.+++|+|+|++|++++.|++|++||+ .+++.+..+.. ......++|+| |++++++++ .
T Consensus 170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 4445565 443 889999999999999999999999999 88888888874 44579999999 999999887 5
Q ss_pred CCcEEEEECCCCCcccCCCCC---------CCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCC-------------
Q psy8895 282 DRTVKCWDLEYNKAPVQPGSM---------DSESGIFSMTFDNSGSR-LITTEADKTVKLYKEDDSA------------- 338 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~------------- 338 (479)
+++|.+||..+.+........ .....+..+.+++++.. +++...+++|.+|+.....
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~ 326 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 326 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence 899999999876654321110 12336889999997665 5566778899999976421
Q ss_pred -----CCCCCeEE-EEeCCCcEEEEECCCCeeEEEEcc----CCCceEEEEEeCC-CcEEEEEc--CCcEEEEeCCC---
Q psy8895 339 -----TEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTN----HKKSVRSVALHPT-LYMFASAS--PDNIKQWKCPE--- 402 (479)
Q Consensus 339 -----~~~~~~l~-sgs~d~~v~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~-~~~l~s~s--~d~i~~w~~~~--- 402 (479)
.++..+++ ++..+++|.+||+.+++.+.++.. |.+....+ ++|+ +.+++++. ++.|.+|+..+
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 12334454 455689999999999999888864 55444333 4776 77788875 35699999988
Q ss_pred ----CeEEeeecCCcceEEEEEEcCCC-EEEEEe-------CCCcEEEEecCCCeEE-EEE
Q psy8895 403 ----GKFIQNLPGHNAIINSICVNNEG-VLVSGA-------DNGTMCFWDWRTGYNF-QRL 450 (479)
Q Consensus 403 ----~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-------~dg~i~lWd~~~~~~~-~~~ 450 (479)
.++++++++|...+..+.++|++ +|++++ .+++|.+||+++++.. +.+
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 466 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence 88999999999888889999999 777776 2789999999998866 444
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.9e-19 Score=189.01 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=164.4
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-----CceEEEEecCCcC--------------EEEEEEcCCCCEEEE
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGS--------------VRGLTVSPRHPYLFS 278 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-----~~~~~~~~~h~~~--------------v~~v~~~~~~~~l~s 278 (479)
+.+.+.+++|+|||++|+++ .|+.|.+||+.+ ++.......+... +.+++|+|||++|++
T Consensus 119 ~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 119 TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence 44556678999999999985 679999999998 7765544444333 478999999999998
Q ss_pred EE---------------------------------CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895 279 CG---------------------------------DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325 (479)
Q Consensus 279 ~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 325 (479)
++ .+..|++||+++++.........+...+..+.|+|+++.+++++.
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence 87 446899999987654322211234456889999999999988776
Q ss_pred CC-----eEEEEeCCCC-C---------------------CC--CCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCce
Q psy8895 326 DK-----TVKLYKEDDS-A---------------------TE--ESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSV 375 (479)
Q Consensus 326 d~-----~i~~~~~~~~-~---------------------~~--~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v 375 (479)
++ .+.+|+.... . .+ ++..+++++.|+.+++|++. +++.+..+..|...+
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV 357 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE
Confidence 65 7888886543 1 12 44567888899999999886 567777888888788
Q ss_pred EE-EEEeCCCcEEE-EEcCC-----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE-eCC---CcEEEEecCC
Q psy8895 376 RS-VALHPTLYMFA-SASPD-----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG-ADN---GTMCFWDWRT 443 (479)
Q Consensus 376 ~~-i~~~~~~~~l~-s~s~d-----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg-~~d---g~i~lWd~~~ 443 (479)
.. ++|+|++..++ +++.+ .+..|+..+++ ...+. |...+.+++|+||+ +++.. +.+ +.|.+||+.+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 77 79999987654 44443 35666776665 33333 66678899999999 66554 333 5699999998
Q ss_pred Ce
Q psy8895 444 GY 445 (479)
Q Consensus 444 ~~ 445 (479)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 86
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=5.5e-20 Score=170.82 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=129.3
Q ss_pred EEEEEEcCCCcEEEEEe--CCCeEEEEE--CCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCC--CC
Q psy8895 222 VRCVAVEPGNEWFATGS--ADKIIKVWD--LATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEY--NK 294 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs--~d~~i~iWd--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~--~~ 294 (479)
+.+++|+|+|++|++++ .++..+||. +.++.. ..+..+. .+..++|+|+++.++ +++.|+.+++|++.. .+
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 44568899999999998 334555554 455543 3444443 588999999999877 778899999998642 22
Q ss_pred cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCC
Q psy8895 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKK 373 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~ 373 (479)
.. .. ......+.++.|+|+++.++.++ ..|+.+++|++. .+..+..+..|..
T Consensus 165 ~~-~~--~~~~~~~~~~~~s~dg~~l~~~~------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 165 ET-RL--THGEGRNDGPDYSPDGRWIYFNS------------------------SRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp EE-EC--CCSSSCEEEEEECTTSSEEEEEE------------------------CTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred ce-Ec--ccCCCccccceECCCCCEEEEEe------------------------cCCCCccEEEECCCCCCcEEEecCCc
Confidence 21 11 23345788999999888765433 235556666664 3455667777888
Q ss_pred ceEEEEEeCCCcEEEEEcCC------------cEEEEeCCCCeE--EeeecCCcceEEEEEEcCCC-EEEEEeCC
Q psy8895 374 SVRSVALHPTLYMFASASPD------------NIKQWKCPEGKF--IQNLPGHNAIINSICVNNEG-VLVSGADN 433 (479)
Q Consensus 374 ~v~~i~~~~~~~~l~s~s~d------------~i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~-~l~sg~~d 433 (479)
.+..++|+|++..++.++.+ .+.+||..+++. +..+.+|...+..++|+|++ .|++++.|
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 89999999999988776543 389999988765 44455788888899999998 67766655
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.4e-19 Score=194.11 Aligned_cols=221 Identities=10% Similarity=-0.012 Sum_probs=173.7
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-----------CCcCEEEEEEc-CCCCEEEEEECC
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-----------HVGSVRGLTVS-PRHPYLFSCGDD 282 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~l~s~~~d 282 (479)
+..|. .+...+|+|+|++|+.++ ++.|.+||+...... .+.+ |...+.+++|+ |||+.+++++ +
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~ 316 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R 316 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-c
Confidence 34444 356679999999998885 899999999554443 5544 33468899999 9999998877 7
Q ss_pred CcEEEEECCCCCcccCCCCCCCCC-CeEEEEEeCCCCEEEEEeCCCeEE-EEeCCCCC----------------CCCCCe
Q psy8895 283 RTVKCWDLEYNKAPVQPGSMDSES-GIFSMTFDNSGSRLITTEADKTVK-LYKEDDSA----------------TEESHP 344 (479)
Q Consensus 283 ~~i~~wd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~-~~~~~~~~----------------~~~~~~ 344 (479)
+.+.+|++........ ..+.. .+..+.|+ +++.++.++.+..+. +|+..... .+++..
T Consensus 317 ~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~ 392 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 392 (1045)
T ss_dssp TEEEEECTTSSBEEEC---SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE
T ss_pred CEEEEEcCCCCceEEc---cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCE
Confidence 8999999876543221 12334 68889999 999999888877787 88865321 134567
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC-C----------cEEEEeCCCCeEEeeecCCc
Q psy8895 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP-D----------NIKQWKCPEGKFIQNLPGHN 413 (479)
Q Consensus 345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d----------~i~~w~~~~~~~~~~~~~h~ 413 (479)
+++++.++.|++||+.+++....+.+|...+.+++|+||++.++.++. + .+.+||..+++ ...+..|.
T Consensus 393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 899999999999999999887777789999999999999998877653 1 59999999887 67788888
Q ss_pred ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
..+..++|+||| .|+.++.++..++|+....
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 889999999999 8999999999899986543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=1.6e-18 Score=164.40 Aligned_cols=216 Identities=11% Similarity=0.141 Sum_probs=146.2
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCc-EEEEECCC
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRT-VKCWDLEY 292 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~-i~~wd~~~ 292 (479)
+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+. ...+++|+|+++++++ ...++. +.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 444444589999999999655553 89999999998887776543 5689999999986554 456688 99999874
Q ss_pred CCcccCC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee---EEE
Q psy8895 293 NKAPVQP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS---LCT 367 (479)
Q Consensus 293 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~---~~~ 367 (479)
....... ...........+.|+|+++++++ ++..++.|++||+.+++. +..
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v------------------------~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFV------------------------ANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEE------------------------EETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEE------------------------EeCCCCeEEEEECCCCcccceeee
Confidence 3321100 00122344677888888776543 334467788888877776 666
Q ss_pred EccCCCceEEEEEeCCCcEEEEEcC-C-cEEEEeCCCCeE--EeeecCC----cc---eEEEEEEcCCC-EE-EEEeCCC
Q psy8895 368 LTNHKKSVRSVALHPTLYMFASASP-D-NIKQWKCPEGKF--IQNLPGH----NA---IINSICVNNEG-VL-VSGADNG 434 (479)
Q Consensus 368 ~~~h~~~v~~i~~~~~~~~l~s~s~-d-~i~~w~~~~~~~--~~~~~~h----~~---~v~~l~~~~~~-~l-~sg~~dg 434 (479)
+..+ ..+..++|+|+++.+..+.. + .+.+||..+++. +..+..+ .. ....++|+|++ +| +++..++
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 6543 56789999999986555443 3 599999999887 3333322 22 23568999998 55 5556677
Q ss_pred cEEEEecCCCeEEEEEEEeEecCCCCCceEE
Q psy8895 435 TMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF 465 (479)
Q Consensus 435 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (479)
.|.+||+.+.. +.++...+..+.+.
T Consensus 296 ~v~v~d~~~~~------~~~~~~~~~~g~~~ 320 (331)
T 3u4y_A 296 ELKVFTISGKV------VGYVAGIEANGGIA 320 (331)
T ss_dssp EEEEEETTSCE------EEECTTCCCBSCEE
T ss_pred cEEEEEecCCc------ccceecccccCCeE
Confidence 99999998753 23455555555444
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=9.1e-19 Score=166.14 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=150.4
Q ss_pred EEEEcCCCcEEEEEe------------CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895 224 CVAVEPGNEWFATGS------------ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs------------~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~ 291 (479)
+++|+|+|+++++++ .++.|.+||+.+++....+.. ...+.+++|+|++++++++ ++.|.+||++
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~ 162 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPE 162 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETT
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECC
Confidence 467888998888876 579999999999888777664 3457788999999988877 6889999998
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE--EEeCCCCCCCCCCeEEEEeCCC----------cEEEEEC
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK--LYKEDDSATEESHPVITGSHDC----------TIRLWDL 359 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~--~~~~~~~~~~~~~~l~sgs~d~----------~v~iwd~ 359 (479)
+.+............. +.++|++..++.....+... +|. ....++ .|.+||+
T Consensus 163 ~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFY-------------TARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp TTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEE-------------EEBTTSCTTSGGGEEEEEEEEET
T ss_pred CCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeee-------------ccccccccccccccccceEEEeC
Confidence 7654322111110111 25677777655444332211 221 111222 6899999
Q ss_pred CCCeeE-EEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895 360 AAGKSL-CTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMC 437 (479)
Q Consensus 360 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~ 437 (479)
.+++.. ..+..+...+..++|+|++..++.+ ++.+.+||..+++.+..+..+ ..+.+++++|++ +|++++.|+.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEE
Confidence 988764 2344566678899999999888777 567999999999888777644 346788999998 788888999999
Q ss_pred EEecCCCeEEEEEEEe
Q psy8895 438 FWDWRTGYNFQRLQVR 453 (479)
Q Consensus 438 lWd~~~~~~~~~~~~~ 453 (479)
+||+++++.++++++.
T Consensus 305 v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 305 AYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEETTTCCEEEEEECG
T ss_pred EEECcCCcEEEEEEcC
Confidence 9999999888776654
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=1.3e-17 Score=158.43 Aligned_cols=200 Identities=13% Similarity=0.162 Sum_probs=131.1
Q ss_pred cEEEEEEcCCCcEEEEEeC-CCeEEEEECC---CCceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CC
Q psy8895 221 WVRCVAVEPGNEWFATGSA-DKIIKVWDLA---TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEY-NK 294 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~-~~ 294 (479)
.+.+++|+|+|+++++++. ++.|.+||+. +++....+..+ ..+.+++|+|+++++++++ .++.|++||+.. ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 3457889999998876665 8899999994 33444445444 3588999999999888877 899999999976 33
Q ss_pred cccC---CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEE
Q psy8895 295 APVQ---PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTL 368 (479)
Q Consensus 295 ~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~ 368 (479)
.... .........+..+.|+|+++.+++++ .++.+.+|+.+. .+++. ...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~-----------------------~~g~~~~~~~~ 220 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD-----------------------PHGNIECVQTL 220 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC-----------------------TTSCCEEEEEE
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC-----------------------CCCcEEEEeec
Confidence 2110 01112234677899999888665433 444555554421 11111 1111
Q ss_pred c----c--CCCceEEEEEeCCCcEEE-EEcCC-cEEEEeCC--C--CeEEeeecCCcceEEEEEEcCCC-EEEEEe-CCC
Q psy8895 369 T----N--HKKSVRSVALHPTLYMFA-SASPD-NIKQWKCP--E--GKFIQNLPGHNAIINSICVNNEG-VLVSGA-DNG 434 (479)
Q Consensus 369 ~----~--h~~~v~~i~~~~~~~~l~-s~s~d-~i~~w~~~--~--~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg 434 (479)
. + ....+..++|+|++..++ +...+ .+.+|+.. + .+.+..+..+.. +..++++|++ +|++++ .|+
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence 1 1 123567899999987555 55444 59999987 3 344555555554 7889999998 676666 689
Q ss_pred cEEEEec--CCCe
Q psy8895 435 TMCFWDW--RTGY 445 (479)
Q Consensus 435 ~i~lWd~--~~~~ 445 (479)
.|.+|++ ++|.
T Consensus 300 ~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 300 HISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEEETTTTE
T ss_pred eEEEEEEcCCCce
Confidence 9999954 4664
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=1.4e-17 Score=159.14 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=140.5
Q ss_pred EEEEEEcCCCcEEEEEe--CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895 222 VRCVAVEPGNEWFATGS--ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs--~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 299 (479)
..+++|+|+|++++.++ .++.|.+||+.+++....+..+...+..++|+|++++++.++.++.|.+||+++.+.....
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 57899999999877766 4789999999999988888756666889999999999999999999999999876543221
Q ss_pred --CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 300 --GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 300 --~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
....+...+..+.++|+++.++++ ...++.|.+||+.+++.+..+..+.. ..
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~------------------------~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFIT------------------------DSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEE------------------------ESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred EcCCCCCCcccceEEECCCCCEEEEE------------------------eCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 111234457778999988876543 23357788888888888777764432 56
Q ss_pred EEEeCCCc-EEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 378 VALHPTLY-MFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 378 i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
++|+|++. ++++...+ .+.+||..+++.+..+..+. .+..++++|++ .|+.+..++
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence 99999987 55555444 59999999999888776544 67899999998 555555443
No 140
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.2e-18 Score=164.43 Aligned_cols=225 Identities=12% Similarity=0.116 Sum_probs=153.6
Q ss_pred EEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCC------cCEEEEEEcCCCCEEEEEECC------------Cc
Q psy8895 224 CVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHV------GSVRGLTVSPRHPYLFSCGDD------------RT 284 (479)
Q Consensus 224 ~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d------------~~ 284 (479)
.++|+|+|+++ ++++.++.|.+||+.+++....+.... ..+..++|+|+++++++++.+ +.
T Consensus 47 ~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 126 (349)
T 1jmx_B 47 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 126 (349)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe
Confidence 46788999865 556678999999999998877665332 236789999999999988765 89
Q ss_pred EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC----CC------------------
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----ES------------------ 342 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----~~------------------ 342 (479)
|.+||+++++.............+.+++|+|+++ +++++. .+.+|+....... ..
T Consensus 127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 127 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred EEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence 9999997643221111112233577888999999 665543 4888887543210 00
Q ss_pred ----CeE-----EEEeCC-----------CcEEEEECCCCee-EEEEccCCCceEEEEEeC-CCcEEEEEcCCcEEEEeC
Q psy8895 343 ----HPV-----ITGSHD-----------CTIRLWDLAAGKS-LCTLTNHKKSVRSVALHP-TLYMFASASPDNIKQWKC 400 (479)
Q Consensus 343 ----~~l-----~sgs~d-----------~~v~iwd~~~~~~-~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~i~~w~~ 400 (479)
..+ +.-+.| ..+..+|..+++. ...+..+...+..++++| ++..++.+ ++.+.+||.
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~ 282 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDL 282 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEET
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEEC
Confidence 000 011111 0112255555432 122334556788999999 99888887 667999999
Q ss_pred CCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 401 PEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 401 ~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.+++.+..+..+. .+.++++++++ .|++++.++.|++||.++++.++++++.
T Consensus 283 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 283 KQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9999887775432 46688999998 7777888999999999999888777653
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=3e-19 Score=188.06 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=185.9
Q ss_pred ceEEEEEccCCceEEEecCCCeEEEEeecccceEeeeccccc---ceEEEEecCCCCccccceEEeccccEEEEeecccC
Q psy8895 35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTN---TIASVVTQASEPQVGTKTVLLESCERIMFVLGTAG 111 (479)
Q Consensus 35 ~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (479)
.+.+++|+|||+++++ +.|++|++||+.+++....+.+|.. .+.++.|+++... ++... ....
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~-----l~~~~--------~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY-----ALFSY--------NVEP 83 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE-----EEEEE--------SCCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE-----EEEEe--------cCcc
Confidence 4678899999998887 7899999999999998888877764 3778888776432 11110 0000
Q ss_pred ceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHH
Q psy8895 112 FLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ 191 (479)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (479)
. ......+.+.+|++...+ .
T Consensus 84 ~-----~~~~~~~~i~~~d~~~~~---------------------------------------------------~---- 103 (723)
T 1xfd_A 84 I-----YQHSYTGYYVLSKIPHGD---------------------------------------------------P---- 103 (723)
T ss_dssp C-----SSSCCCSEEEEEESSSCC---------------------------------------------------C----
T ss_pred c-----eeecceeeEEEEECCCCc---------------------------------------------------e----
Confidence 0 000001222233221000 0
Q ss_pred HHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE-------
Q psy8895 192 QAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV------- 264 (479)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v------- 264 (479)
+......+|...+.+++|+|||++|+.++. +.|.+||+.+++.......+...+
T Consensus 104 ------------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 104 ------------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp ------------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred ------------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 000001234555778899999999999986 799999999988766655544333
Q ss_pred -----------EEEEEcCCCCEEEEEECCC----------------------------------cEEEEECCCCCcccCC
Q psy8895 265 -----------RGLTVSPRHPYLFSCGDDR----------------------------------TVKCWDLEYNKAPVQP 299 (479)
Q Consensus 265 -----------~~v~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~ 299 (479)
.+++|+|||+.|++++.|+ .|++||+.+.+.....
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 7899999999999887553 7889998766532221
Q ss_pred CCC----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc-CCCc
Q psy8895 300 GSM----DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-HKKS 374 (479)
Q Consensus 300 ~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-h~~~ 374 (479)
... .+...+..+.|+|+++.++.....+ ..+..|++||+.+++....+.. +...
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------------------~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRA---------------------QNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---------------------SCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCC---------------------CCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 110 1134578899999988765443211 1235688999988877665543 3333
Q ss_pred e----EEEEEeCCCcEEEE--EcC-C------cEEEEe-CCCCe--EEeeecC-CcceEEEEEEcCCC-EEEEEeC-C--
Q psy8895 375 V----RSVALHPTLYMFAS--ASP-D------NIKQWK-CPEGK--FIQNLPG-HNAIINSICVNNEG-VLVSGAD-N-- 433 (479)
Q Consensus 375 v----~~i~~~~~~~~l~s--~s~-d------~i~~w~-~~~~~--~~~~~~~-h~~~v~~l~~~~~~-~l~sg~~-d-- 433 (479)
+ ..++|+|+++.|+. +.. + .+.+|| ..+++ +...+.. +......++++||+ .|+..+. +
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 3 37899999985553 333 3 267777 34444 1445544 33334447899998 6665544 4
Q ss_pred CcEEEEecCC
Q psy8895 434 GTMCFWDWRT 443 (479)
Q Consensus 434 g~i~lWd~~~ 443 (479)
+.++||++..
T Consensus 384 ~~~~l~~~~~ 393 (723)
T 1xfd_A 384 RRRQLYSANT 393 (723)
T ss_dssp TCCEEEEECS
T ss_pred cceEEEEEeC
Confidence 8899999874
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=3.2e-17 Score=156.62 Aligned_cols=202 Identities=12% Similarity=0.131 Sum_probs=132.0
Q ss_pred EEEEEEcCCCcEEEEEe-CCCeEEEEECC-CCce--EEEEec---------CCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895 222 VRCVAVEPGNEWFATGS-ADKIIKVWDLA-TGKL--KLSLTG---------HVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs-~d~~i~iWd~~-~~~~--~~~~~~---------h~~~v~~v~~~~~~~~l~s~~~d~~i~~w 288 (479)
+..++|+|+|++|++++ .++.|.+|++. ++.. +..+.. +...+.+++|+|+++++++...++.|++|
T Consensus 88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY 167 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence 34678999999888888 67999999995 3332 223321 12248899999999966666678899999
Q ss_pred ECC-CCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC--Cee
Q psy8895 289 DLE-YNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA--GKS 364 (479)
Q Consensus 289 d~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~--~~~ 364 (479)
|+. .++.... ............++|+|++++++++. ..++.|++|++.. ++.
T Consensus 168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~------------------------~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG------------------------ELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE------------------------TTTTEEEEEEEETTTTEE
T ss_pred EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe------------------------CCCCEEEEEEecCCCCce
Confidence 997 3322111 00112234577899999988665432 2234444454442 221
Q ss_pred --EEEEccCC------CceEEEEEeCCCcEE-EEEc-CCcEEEEeCC---CCeEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895 365 --LCTLTNHK------KSVRSVALHPTLYMF-ASAS-PDNIKQWKCP---EGKFIQNLPGHNAIINSICVNNEG-VLVSG 430 (479)
Q Consensus 365 --~~~~~~h~------~~v~~i~~~~~~~~l-~s~s-~d~i~~w~~~---~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg 430 (479)
+..+.... ..+..++|+|+++.+ ++.. ++.+.+|++. +.+.+..+..+...+..++|+||+ +|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence 22222221 458899999999865 5554 3469999986 225566677777778899999999 67666
Q ss_pred eC-CCcEEEE--ecCCCeEE
Q psy8895 431 AD-NGTMCFW--DWRTGYNF 447 (479)
Q Consensus 431 ~~-dg~i~lW--d~~~~~~~ 447 (479)
+. ++.|.+| |.++|+..
T Consensus 304 ~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ETTTTEEEEEEECTTTCCEE
T ss_pred EcCCCcEEEEEEeCCCCeEE
Confidence 64 5899999 55567544
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.2e-18 Score=174.71 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=130.3
Q ss_pred EEEEcCCCc--EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCCccc
Q psy8895 224 CVAVEPGNE--WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLEYNKAPV 297 (479)
Q Consensus 224 ~~~~~~~g~--~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~ 297 (479)
..+|+|+|+ .+++++.++. .+||+.+++.......+. .+++|+|||+++++++.| +.|++||+++++...
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~ 189 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 189 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE
T ss_pred eeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE
Confidence 446666664 5555655554 499999987655444333 788999999999988777 789999998765432
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
. ..+...+..++|+|+|+.++++..++. .+|++||+.+++.. .+.+|...+..
T Consensus 190 l---~~~~~~~~~~~~SpDG~~l~~~~~~~~-----------------------~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 190 F---DSGEGSFSSASISPGMKVTAGLETARE-----------------------ARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp E---CCSSCEEEEEEECTTSCEEEEEECSSC-----------------------EEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred e---ecCCCccccceECCCCCEEEEccCCCe-----------------------eEEEEEcCCCCcEE-EccCCCcChhh
Confidence 2 234456789999999988764433321 16778888887776 66777777777
Q ss_pred EE--------EeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCc---EEEEecC
Q psy8895 378 VA--------LHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGT---MCFWDWR 442 (479)
Q Consensus 378 i~--------~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~---i~lWd~~ 442 (479)
++ |+||+.++++++.+ .+++|++ ++... .+.+.|.+++++ ++ ++++++.+.+ +.+||..
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 77 99999888888766 5999999 76654 334678899999 77 7777777644 5566654
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=2.2e-18 Score=169.79 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=118.8
Q ss_pred CCccEEEEEEcCCCcEEE----EEeCCCeEEEEECCCC--------c---eEEEEecCCcCEEEEEEcCC-CCEEEEEEC
Q psy8895 218 HLGWVRCVAVEPGNEWFA----TGSADKIIKVWDLATG--------K---LKLSLTGHVGSVRGLTVSPR-HPYLFSCGD 281 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~----sgs~d~~i~iWd~~~~--------~---~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~ 281 (479)
|.+.|.+++|+|+|++|+ +|+.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +.++++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 567899999999999999 8899999999998654 1 13456779999999999998 789999999
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q psy8895 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA 361 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~ 361 (479)
|++|++||+++....... ..+...+.+++|+|++++++ +|+.|++|++||++
T Consensus 171 Dg~v~iwD~~~~~~~~~~--~~~~~~v~~v~wspdg~~la-------------------------sgs~dg~v~iwd~~- 222 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCAT--LPSTVAVTSVCWSPKGKQLA-------------------------VGKQNGTVVQYLPT- 222 (434)
T ss_dssp TSCEEEEEESSSEEEEEE--ECGGGCEEEEEECTTSSCEE-------------------------EEETTSCEEEECTT-
T ss_pred CCeEEEEEcCCCcceeec--cCCCCceeEEEEcCCCCEEE-------------------------EEcCCCcEEEEccC-
Confidence 999999999876432211 23456799999999877654 55556667777766
Q ss_pred CeeEEEEccC-------CCceEEEEEeCCCcEEEEEc--CC------cEEEEeCCCC
Q psy8895 362 GKSLCTLTNH-------KKSVRSVALHPTLYMFASAS--PD------NIKQWKCPEG 403 (479)
Q Consensus 362 ~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s--~d------~i~~w~~~~~ 403 (479)
++....+..| ...|.+++|+++..++++.+ ++ .+++|++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 4444444433 33799999999887775433 21 2889998654
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=9e-18 Score=176.75 Aligned_cols=205 Identities=9% Similarity=-0.006 Sum_probs=127.4
Q ss_pred cEEEEEEcCCCcEEEEEeCCC----------------------------------eEEEEECCCCceEEEEecC------
Q psy8895 221 WVRCVAVEPGNEWFATGSADK----------------------------------IIKVWDLATGKLKLSLTGH------ 260 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~----------------------------------~i~iWd~~~~~~~~~~~~h------ 260 (479)
.+.+++|+|||++|++++.|+ .|.+||+.+++....+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 347899999999999887653 7999999988765566654
Q ss_pred CcCEEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcccCCCCCCCCCCe----EEEEEeCCCCEEEEEeCCCeEEEE
Q psy8895 261 VGSVRGLTVSPRHPYLFSCGD----DRTVKCWDLEYNKAPVQPGSMDSESGI----FSMTFDNSGSRLITTEADKTVKLY 332 (479)
Q Consensus 261 ~~~v~~v~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~d~~i~~~ 332 (479)
...+..++|+|||+++++.+. +..|++||+.+++...... ......+ ..+.|+|+++.++..
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~--------- 323 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DESEAWLHRQNEEPVFSKDGRKFFFI--------- 323 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EECSSCCCCCCCCCEECTTSCSEEEE---------
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-eccCCEEeccCCCceEcCCCCeEEEE---------
Confidence 567899999999998876643 3579999998765432110 0011111 257888888866532
Q ss_pred eCCCCCCCCCCeEEEEeCCC------cEEEEE-CCCCe--eEEEEccCCCceEE-EEEeCCCcEEEEE-cC---CcEEEE
Q psy8895 333 KEDDSATEESHPVITGSHDC------TIRLWD-LAAGK--SLCTLTNHKKSVRS-VALHPTLYMFASA-SP---DNIKQW 398 (479)
Q Consensus 333 ~~~~~~~~~~~~l~sgs~d~------~v~iwd-~~~~~--~~~~~~~h~~~v~~-i~~~~~~~~l~s~-s~---d~i~~w 398 (479)
++..|+ .|.+|| ...++ +...+..+...+.. ++|+|++..++.. .+ ..+.+|
T Consensus 324 --------------~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 324 --------------RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp --------------EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred --------------EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 122233 355566 33333 13444433344544 6999999877644 44 348889
Q ss_pred eCCCC--eEEeeecC---CcceEEEEEEcCCC-EEEE-EeCCC--cEEEEecCCCeEEEE
Q psy8895 399 KCPEG--KFIQNLPG---HNAIINSICVNNEG-VLVS-GADNG--TMCFWDWRTGYNFQR 449 (479)
Q Consensus 399 ~~~~~--~~~~~~~~---h~~~v~~l~~~~~~-~l~s-g~~dg--~i~lWd~~~~~~~~~ 449 (479)
++... .....+.. |...+..+.++||+ .|+. .+... ...+++..++..+..
T Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 87542 23334443 66778889999998 5543 33332 334556555544433
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=2.8e-17 Score=152.46 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=150.7
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-CceEEEEecCC-cCEEEEEEcCCCCEEEEEE--CCCcEEEEE
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-GKLKLSLTGHV-GSVRGLTVSPRHPYLFSCG--DDRTVKCWD 289 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~--~d~~i~~wd 289 (479)
.+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......|. ..+.+++|+|+++++++++ .++..++|.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4556888999999999999999987 78999999999 87776666663 6788999999999999988 445566665
Q ss_pred C--CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEE
Q psy8895 290 L--EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLC 366 (479)
Q Consensus 290 ~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~ 366 (479)
+ ...... . ......+..+.|+|+++.++ ++++.|+.+++|++.. .....
T Consensus 115 ~~~~~~~~~-~---~~~~~~~~~~~~spdg~~l~------------------------~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 115 LPSTGGTPR-L---MTKNLPSYWHGWSPDGKSFT------------------------YCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EETTCCCCE-E---CCSSSSEEEEEECTTSSEEE------------------------EEEEETTEEEEEEEETTTCCEE
T ss_pred EECCCCceE-E---eecCCCccceEECCCCCEEE------------------------EEECCCCceEEEEEECCCCcce
Confidence 4 433321 1 11223478889999888765 2333455566665422 22344
Q ss_pred EEccCCCceEEEEEeCCCcEEEEEc--CCcEEEEeCC-CCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC---------
Q psy8895 367 TLTNHKKSVRSVALHPTLYMFASAS--PDNIKQWKCP-EGKFIQNLPGHNAIINSICVNNEG-VLVSGADN--------- 433 (479)
Q Consensus 367 ~~~~h~~~v~~i~~~~~~~~l~s~s--~d~i~~w~~~-~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d--------- 433 (479)
.+..|...+.+++|+|++..++.++ ++.+.+|++. .+.....+..|...+..++++|++ +|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 5666778899999999998776554 3458888875 455667788888899999999999 77777765
Q ss_pred --CcEEEEecCCCeEEE
Q psy8895 434 --GTMCFWDWRTGYNFQ 448 (479)
Q Consensus 434 --g~i~lWd~~~~~~~~ 448 (479)
+.|.+||+.+++...
T Consensus 247 ~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVET 263 (297)
T ss_dssp EEEEEEEEETTSCSCEE
T ss_pred CceEEEEEecCCCCcee
Confidence 569999999886543
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=2.7e-16 Score=150.24 Aligned_cols=231 Identities=10% Similarity=0.049 Sum_probs=172.9
Q ss_pred CccEEEEEEcCCCcEEEEEeC-------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEEC
Q psy8895 219 LGWVRCVAVEPGNEWFATGSA-------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDL 290 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~-------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~ 290 (479)
...+..++|+|+|++++.++. ++.|.+||..+++....+... ..+..++++|++++++ +...++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999998888774 568999999999888777643 3467889999999655 4556799999999
Q ss_pred CCCCcccCCCCCC-------CCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCC-----------------CCCCCe
Q psy8895 291 EYNKAPVQPGSMD-------SESGIFSMTFDNSGSRLITTE--ADKTVKLYKEDDSA-----------------TEESHP 344 (479)
Q Consensus 291 ~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~-----------------~~~~~~ 344 (479)
++++......... ....+..+.++|+++.++++. .++.|.+|+..... .++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8766432211100 011267899999999887776 47889999875431 123456
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcc----CCCceEEEEEeCCCcEEEEE-cC-CcEEEEeCCCCeEEeeecCCcceEEE
Q psy8895 345 VITGSHDCTIRLWDLAAGKSLCTLTN----HKKSVRSVALHPTLYMFASA-SP-DNIKQWKCPEGKFIQNLPGHNAIINS 418 (479)
Q Consensus 345 l~sgs~d~~v~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~l~s~-s~-d~i~~w~~~~~~~~~~~~~h~~~v~~ 418 (479)
+++++.++.|.+||+.+++.+..+.. +...+..++|+|++..+..+ .. +.+.+||..+++.+..+..+.. ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 88888999999999999998877754 45578899999998755444 44 3599999999988877765432 46
Q ss_pred EEEcCCC-E-EEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895 419 ICVNNEG-V-LVSGADNGTMCFWDWRTGYNFQRLQV 452 (479)
Q Consensus 419 l~~~~~~-~-l~sg~~dg~i~lWd~~~~~~~~~~~~ 452 (479)
++++|++ . +++...++.|.+||..+++.++.+..
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 8899988 4 45555799999999999988776643
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=3.5e-18 Score=168.28 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=145.3
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----------ceEE-----EEecCCcCEEEEEEcCCCCEEE----EEE
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATG----------KLKL-----SLTGHVGSVRGLTVSPRHPYLF----SCG 280 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----------~~~~-----~~~~h~~~v~~v~~~~~~~~l~----s~~ 280 (479)
..+..+++++++.++++++.|+ +++|+.... .... ....+...|.+++|+|++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3467889999999999999988 888874210 0111 1123566899999999999999 788
Q ss_pred CCCcEEEEECCCC-----Cc---cc-CCCCCCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895 281 DDRTVKCWDLEYN-----KA---PV-QPGSMDSESGIFSMTFDNS-GSRLITTEADKTVKLYKEDDSATEESHPVITGSH 350 (479)
Q Consensus 281 ~d~~i~~wd~~~~-----~~---~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~ 350 (479)
.|+.|++||+++. +. .. ......+...|.+++|+|+ +. .+++++.
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-------------------------~las~s~ 170 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS-------------------------MVAVCLA 170 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT-------------------------EEEEEET
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC-------------------------EEEEEEC
Confidence 9999999998643 11 00 0111234667999999986 33 3567788
Q ss_pred CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC-------cceEEEEEEc
Q psy8895 351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH-------NAIINSICVN 422 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h-------~~~v~~l~~~ 422 (479)
|++|++||++++..+....+|...|++++|+|++.+|++++.| .|++||.. ++....+..| ...|.+++++
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 8889999998887776677789999999999999999988877 49999997 5555555433 3489999999
Q ss_pred CCCE-EE-EEeCCCc------EEEEecCCC
Q psy8895 423 NEGV-LV-SGADNGT------MCFWDWRTG 444 (479)
Q Consensus 423 ~~~~-l~-sg~~dg~------i~lWd~~~~ 444 (479)
+++. ++ ....||. +++|++++.
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9883 32 3444543 899999864
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.76 E-value=5.7e-17 Score=171.14 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=168.7
Q ss_pred CccEEEEEEcCCCcEEEEEeC-CC-----eEEEEECCCCceEEEEecCCcC------------------------EEEEE
Q psy8895 219 LGWVRCVAVEPGNEWFATGSA-DK-----IIKVWDLATGKLKLSLTGHVGS------------------------VRGLT 268 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~-d~-----~i~iWd~~~~~~~~~~~~h~~~------------------------v~~v~ 268 (479)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+... +.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 356889999999999999998 88 9999999999887766654332 78899
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCC---CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------
Q psy8895 269 VSPRHPYLFSCGDDRTVKCWDLEYN---KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------- 338 (479)
Q Consensus 269 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------- 338 (479)
|+|||++|++++. +.|++||+.++ ... .. ..+...+..+.|+|+|+.++.++. +.|.+|+.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l--~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL--THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC--CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec--ccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC
Confidence 9999999998876 99999999876 322 11 233467899999999999988874 589999865321
Q ss_pred --------------------------CCCCCeEEEEeCCC---------------------------------cEEEEEC
Q psy8895 339 --------------------------TEESHPVITGSHDC---------------------------------TIRLWDL 359 (479)
Q Consensus 339 --------------------------~~~~~~l~sgs~d~---------------------------------~v~iwd~ 359 (479)
.+++..|++++.|+ .|++||+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 12345678877665 7899999
Q ss_pred CC-CeeEEEEc--cCCCceEEEEEeCCCcEEEEEcC-----C-cEEEEeCCCCeEEeeecCCcc----eEEEEEEcCCC-
Q psy8895 360 AA-GKSLCTLT--NHKKSVRSVALHPTLYMFASASP-----D-NIKQWKCPEGKFIQNLPGHNA----IINSICVNNEG- 425 (479)
Q Consensus 360 ~~-~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~-----d-~i~~w~~~~~~~~~~~~~h~~----~v~~l~~~~~~- 425 (479)
.+ ++...... .|...+..++| ||++.++.++. + .|.+||..+++....+..+.. .+..++|+||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 88 77554432 47788999999 99998876542 2 489999999987766655432 34578999999
Q ss_pred EEEEEeCCCcEEEEecC
Q psy8895 426 VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 426 ~l~sg~~dg~i~lWd~~ 442 (479)
++++++.||.++||.+.
T Consensus 350 ~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 350 ILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEECTTSSCEEEEEC
T ss_pred EEEEecCCCccEEEEEc
Confidence 78889999998888876
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.75 E-value=2.8e-17 Score=168.63 Aligned_cols=220 Identities=10% Similarity=0.050 Sum_probs=159.6
Q ss_pred CccEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEEC---CCcEEEEECCC-
Q psy8895 219 LGWVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGD---DRTVKCWDLEY- 292 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~---d~~i~~wd~~~- 292 (479)
..+|.+++|+|||++||+++. |++++||++.+++.. .+..|. ..+..++|+|| +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 356899999999999999887 999999999766554 455555 58999999999 77777765 45566765432
Q ss_pred -CCcccCCCCCCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCC--------------CCCCeEEEEeCC----C
Q psy8895 293 -NKAPVQPGSMDSESGIFSMTFDNSGSR-LITTEADKTVKLYKEDDSAT--------------EESHPVITGSHD----C 352 (479)
Q Consensus 293 -~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~--------------~~~~~l~sgs~d----~ 352 (479)
....... ..........|+|+++. +++...++.+.+|+...... +++..+++++.| +
T Consensus 99 ~~g~~~~l---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 99 RPGEEQRL---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp STTCCEEC---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEE
T ss_pred CCCccccc---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCe
Confidence 1111111 11123345577777653 33334444455898754321 345678877777 7
Q ss_pred cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---cEEEEeCCCCeEEeeecCCcceEEEEE--------E
Q psy8895 353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---NIKQWKCPEGKFIQNLPGHNAIINSIC--------V 421 (479)
Q Consensus 353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---~i~~w~~~~~~~~~~~~~h~~~v~~l~--------~ 421 (479)
.|++||+.+++.. .+..|...+..++||||++.++++..+ .|.+||..+++.. .+.+|...+..++ +
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE
Confidence 8999999887654 677888899999999999998866555 4899999998887 7777876666666 9
Q ss_pred cCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895 422 NNEG-VLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 422 ~~~~-~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
+||+ ++++++.|+++++|++ |...
T Consensus 254 spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred cCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 9999 7889999999999999 6544
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=6.8e-17 Score=170.38 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=146.2
Q ss_pred EEEEcCCCcEEEEEeCC---------CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895 224 CVAVEPGNEWFATGSAD---------KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d---------~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~ 294 (479)
.++|+|||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.|+.+ .|+.|++||+.++.
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 46789999999998876 55679999998764 466677889999999999999887 46899999997655
Q ss_pred cccCCCCCCCCCCe-----------------EEEEEeCCCCEEEEEeCCCe-EEEEeCCCCCCC--CCCeE------EEE
Q psy8895 295 APVQPGSMDSESGI-----------------FSMTFDNSGSRLITTEADKT-VKLYKEDDSATE--ESHPV------ITG 348 (479)
Q Consensus 295 ~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~--~~~~l------~sg 348 (479)
..... ..+....+ ..+.|+|+|+.++..+.|.+ +++|........ ..... ..|
T Consensus 144 ~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 144 SYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred eEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 43211 11111112 24889999999988876554 666654211110 00000 011
Q ss_pred e--CCCcEEEEECCC---Ce--eEEEEc------cCCCceEEEEEeCCCcEEEEEcC---C--cEEEEeCCCCe----EE
Q psy8895 349 S--HDCTIRLWDLAA---GK--SLCTLT------NHKKSVRSVALHPTLYMFASASP---D--NIKQWKCPEGK----FI 406 (479)
Q Consensus 349 s--~d~~v~iwd~~~---~~--~~~~~~------~h~~~v~~i~~~~~~~~l~s~s~---d--~i~~w~~~~~~----~~ 406 (479)
. .+.++++||+.+ ++ ....+. +|...+..++|+||++.++.... + .|.+||..+++ +.
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 1 123689999998 73 233343 37788999999999986655422 2 38899998887 22
Q ss_pred --eee--cCCcceEE-----EEEEcCCC-EEE-EEeC-C--CcEEEEecCCCeEE
Q psy8895 407 --QNL--PGHNAIIN-----SICVNNEG-VLV-SGAD-N--GTMCFWDWRTGYNF 447 (479)
Q Consensus 407 --~~~--~~h~~~v~-----~l~~~~~~-~l~-sg~~-d--g~i~lWd~~~~~~~ 447 (479)
..+ .+|...|. ...|+||| .|+ ..++ + ..|.+||..++...
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 222 45665554 67899999 555 5553 3 45778888776543
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.71 E-value=3.7e-15 Score=141.07 Aligned_cols=216 Identities=9% Similarity=0.086 Sum_probs=154.0
Q ss_pred EcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCc-ccCCCCCC
Q psy8895 227 VEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYNKA-PVQPGSMD 303 (479)
Q Consensus 227 ~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~~~~~~ 303 (479)
|.+++ ..+++.+.++.|.+||+.+++....+..+.... .++|+|++++++.++. ++.|.+||+++.+. .... ..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI--QE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE--EE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec--cc
Confidence 44444 457888899999999999999888877666666 9999999997776655 88999999987654 2211 11
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCC----------------CCCC-eEEEEeCCCc-EEEEECCCC
Q psy8895 304 SESGIFSMTFDNSGSRLITTEADK---TVKLYKEDDSAT----------------EESH-PVITGSHDCT-IRLWDLAAG 362 (479)
Q Consensus 304 ~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~----------------~~~~-~l~sgs~d~~-v~iwd~~~~ 362 (479)
......+++|+|++++++++..++ .|.+|+...... +++. .+++...++. +.+|++...
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 122233389999999998555553 899999865321 2333 4455566688 999999864
Q ss_pred eeEE----EEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeE---EeeecCCcceEEEEEEcCCC-EEE-EEe
Q psy8895 363 KSLC----TLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKF---IQNLPGHNAIINSICVNNEG-VLV-SGA 431 (479)
Q Consensus 363 ~~~~----~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~---~~~~~~h~~~v~~l~~~~~~-~l~-sg~ 431 (479)
..+. ...........++|+|+++ ++++...+ .+.+||..+++. +..+..+ ..+..++++|++ +|+ +..
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 3331 1123345679999999997 45555544 599999998887 7776654 456788999999 454 444
Q ss_pred CCCcEEEEecCCCeE
Q psy8895 432 DNGTMCFWDWRTGYN 446 (479)
Q Consensus 432 ~dg~i~lWd~~~~~~ 446 (479)
.++.|.+||.++++.
T Consensus 241 ~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 241 STVDVFNFNQLSGTL 255 (331)
T ss_dssp SEEEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCce
Confidence 688999999999876
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=7e-15 Score=141.51 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=118.8
Q ss_pred CCCeEEEEECC-CCceEEEEe----cCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECC-CCCcccC-CCCCC-CCCCeE
Q psy8895 239 ADKIIKVWDLA-TGKLKLSLT----GHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLE-YNKAPVQ-PGSMD-SESGIF 309 (479)
Q Consensus 239 ~d~~i~iWd~~-~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~-~~~~~~~-~~~~~-~~~~i~ 309 (479)
.++.+.+|++. +++....+. .+...+.+++|+|||++++++.. ++.|++||++ +++.... ..... +...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 68899999997 465544333 24567899999999998887654 6799999997 4443211 10111 245688
Q ss_pred EEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE------EEEc----cCCC-----
Q psy8895 310 SMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL------CTLT----NHKK----- 373 (479)
Q Consensus 310 ~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~------~~~~----~h~~----- 373 (479)
.++|+|++++++++.. ++.+.+|+.+. .+++.. ..+. +|..
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDP-----------------------ATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECT-----------------------TTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeC-----------------------CCCcEEEccceEEcCCCCcCCcccccccc
Confidence 8999999988766543 44555554321 122211 1111 2222
Q ss_pred -ceEEEE-EeCCCcEEEEEc--CC-----cEEEEeCC-CCeEEe---eecCCcceEEEEEEcC---CC-EEEEEeC-CCc
Q psy8895 374 -SVRSVA-LHPTLYMFASAS--PD-----NIKQWKCP-EGKFIQ---NLPGHNAIINSICVNN---EG-VLVSGAD-NGT 435 (479)
Q Consensus 374 -~v~~i~-~~~~~~~l~s~s--~d-----~i~~w~~~-~~~~~~---~~~~h~~~v~~l~~~~---~~-~l~sg~~-dg~ 435 (479)
.+..++ |+|+++.++++. .+ .|.+|++. +++... ....+...+..++++| |+ +|++++. +++
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 578999 999998765543 33 69999985 666543 2333444455678888 67 8887776 489
Q ss_pred EEEEecCCC
Q psy8895 436 MCFWDWRTG 444 (479)
Q Consensus 436 i~lWd~~~~ 444 (479)
|++|+++.+
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999999876
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.70 E-value=5e-16 Score=163.34 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=145.6
Q ss_pred EEEEEEcCCCcEEEEEeC---------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 222 VRCVAVEPGNEWFATGSA---------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~---------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
+.+++|+|||++|++++. ++.|++||+.+++.+.. ......+..++|||||+.|+.+. |+.|++||+.+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~ 139 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG 139 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence 356789999999998876 78999999999876210 11235688899999999998875 78999999976
Q ss_pred CCcccCCCCCCCCCCe-----------------EEEEEeCCCCEEEEEeCCC----------------------------
Q psy8895 293 NKAPVQPGSMDSESGI-----------------FSMTFDNSGSRLITTEADK---------------------------- 327 (479)
Q Consensus 293 ~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~---------------------------- 327 (479)
++..... .......+ ..+.|+|+|+.++.++.|.
T Consensus 140 g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 140 DPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp SCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 6543211 11111112 4799999999999887552
Q ss_pred ------eEEEEeCCCCCC-------------------------CCCCeEEEEeCC----CcEEEEE----CCCCeeEEEE
Q psy8895 328 ------TVKLYKEDDSAT-------------------------EESHPVITGSHD----CTIRLWD----LAAGKSLCTL 368 (479)
Q Consensus 328 ------~i~~~~~~~~~~-------------------------~~~~~l~sgs~d----~~v~iwd----~~~~~~~~~~ 368 (479)
.+.+|+...... ++...+++.... ..|.+|| +.+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 678888754321 223344443322 2488899 7777655444
Q ss_pred ----ccCCCceE-----EEEEeCCCcEEE--EEcCC---cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeC--
Q psy8895 369 ----TNHKKSVR-----SVALHPTLYMFA--SASPD---NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGAD-- 432 (479)
Q Consensus 369 ----~~h~~~v~-----~i~~~~~~~~l~--s~s~d---~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~-- 432 (479)
.+|...+. .+.|+|++..++ ++..+ .+.+|+..+++ ...+..+...+..+.+++++.|+..+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~ 377 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEF 377 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCG
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecC
Confidence 36776676 889999998443 33333 37788887766 445666666676666564445554444
Q ss_pred ---CCcEEEEecCC
Q psy8895 433 ---NGTMCFWDWRT 443 (479)
Q Consensus 433 ---dg~i~lWd~~~ 443 (479)
++..++|.+..
T Consensus 378 ~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 378 EEYPGRRNIYRISI 391 (719)
T ss_dssp GGCTTCBEEEEEEC
T ss_pred CCCCceEEEEEEeC
Confidence 48899998764
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=4.7e-14 Score=135.35 Aligned_cols=180 Identities=9% Similarity=0.107 Sum_probs=114.6
Q ss_pred CccEEEEEEcCCCcEEEEEe-CCCeEEEEECCCCc-------e------EEEEecCCcCEEEEEEcCCCCEEEEEE-CCC
Q psy8895 219 LGWVRCVAVEPGNEWFATGS-ADKIIKVWDLATGK-------L------KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDR 283 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs-~d~~i~iWd~~~~~-------~------~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~ 283 (479)
...+.+++|+|+|++++.++ .++.|.+|++.... . ......+......++|+|++++++.++ .++
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 34478899999999765555 58899999887543 1 111223345678999999999887776 689
Q ss_pred cEEEEECCCCCccc--CC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895 284 TVKCWDLEYNKAPV--QP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA 360 (479)
Q Consensus 284 ~i~~wd~~~~~~~~--~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~ 360 (479)
.|.+||+..+.... .. ...........++|+|++++++++..+ .+++|.+|++.
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-----------------------~~~~i~v~~~~ 290 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-----------------------KADGVAIFKVD 290 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-----------------------SSCEEEEEEEC
T ss_pred eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-----------------------CCCEEEEEEEc
Confidence 99999987543211 00 111122446789999999887554432 03455555553
Q ss_pred --CCe--eEEEEccCCCceEEEEEeCCCcEEEEEc-CC-cEEEE--eCCCCeEEeeec-CCcceEEEEEEc
Q psy8895 361 --AGK--SLCTLTNHKKSVRSVALHPTLYMFASAS-PD-NIKQW--KCPEGKFIQNLP-GHNAIINSICVN 422 (479)
Q Consensus 361 --~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d-~i~~w--~~~~~~~~~~~~-~h~~~v~~l~~~ 422 (479)
+++ .+..+.. ...++.++|+|++++++.++ .+ .+.+| |..++++..... .+...+.|+.|.
T Consensus 291 ~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 291 ETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 222 3344443 45678999999998776665 33 58885 555777654432 233457777765
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=1.7e-14 Score=138.49 Aligned_cols=198 Identities=10% Similarity=0.098 Sum_probs=136.0
Q ss_pred EEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEE-EecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCC-CCcccC
Q psy8895 224 CVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEY-NKAPVQ 298 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~-~~~~~~ 298 (479)
.++|+|||++|+.++. +++|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.|+.+.+|+.+. ++....
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 3678999999988874 58999999999988776 4422 23345677765 5677888999999998864 221100
Q ss_pred C---CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCCeEE
Q psy8895 299 P---GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESHPVI 346 (479)
Q Consensus 299 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~l~ 346 (479)
. ...........+.+.+++..++..+.++.+.+++..... .++...++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 0 001111111112224455566666667777777753210 11223344
Q ss_pred EEeC-----------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC--eEEeeecCCc
Q psy8895 347 TGSH-----------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG--KFIQNLPGHN 413 (479)
Q Consensus 347 sgs~-----------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~--~~~~~~~~h~ 413 (479)
.+.. +++|.+||+.+++.+.++..+. ...++|+|++++++++..+.|.+||..++ +.+.++..+.
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAA 347 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSC
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCC
Confidence 4322 3489999999999999998776 89999999998888777777999999999 9999987777
Q ss_pred ceEEEEEEcCCC
Q psy8895 414 AIINSICVNNEG 425 (479)
Q Consensus 414 ~~v~~l~~~~~~ 425 (479)
.....++++|+|
T Consensus 348 ~~P~~~~~~p~G 359 (361)
T 2oiz_A 348 EASLQVQFHPVG 359 (361)
T ss_dssp SSEEEEEECCCS
T ss_pred CCcEEEEecCCC
Confidence 778888999886
No 157
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=1.2e-14 Score=137.80 Aligned_cols=209 Identities=16% Similarity=0.300 Sum_probs=142.1
Q ss_pred EEEEEeCCCeEEEEECC-CCce-EEEEecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEECC--CCCcccCCCCCCCCCC
Q psy8895 233 WFATGSADKIIKVWDLA-TGKL-KLSLTGHVGSVRGLTVSPRHPYLFSCGDD-RTVKCWDLE--YNKAPVQPGSMDSESG 307 (479)
Q Consensus 233 ~l~sgs~d~~i~iWd~~-~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~~wd~~--~~~~~~~~~~~~~~~~ 307 (479)
.+++++.|+.|++||+. ++.. ......|...+.+++|+|+++++++++.+ +.|++|++. ++...... .......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPGS 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEECSSC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-ccccCCC
Confidence 45555789999999995 3432 12223466788999999999998888876 999999987 33321110 1111236
Q ss_pred eEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCC-------------------CCCCCeEEEEe-CCCcEEEEECCC-CeeE
Q psy8895 308 IFSMTFDNSGSRLITTEA-DKTVKLYKEDDSA-------------------TEESHPVITGS-HDCTIRLWDLAA-GKSL 365 (479)
Q Consensus 308 i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~-------------------~~~~~~l~sgs-~d~~v~iwd~~~-~~~~ 365 (479)
+..++|+|+++.+++++. ++.+.+|+..... .+++..+++++ .|+.|++||+.+ ++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 778999999998876664 7889999873110 12344566666 899999999987 5432
Q ss_pred E----EEcc-CCCceEEEEEeCCCcEE-EEEcCC-cEEEEeCC--CCeE--Eeee---c-CC--cceEEEEEEcCCC-EE
Q psy8895 366 C----TLTN-HKKSVRSVALHPTLYMF-ASASPD-NIKQWKCP--EGKF--IQNL---P-GH--NAIINSICVNNEG-VL 427 (479)
Q Consensus 366 ~----~~~~-h~~~v~~i~~~~~~~~l-~s~s~d-~i~~w~~~--~~~~--~~~~---~-~h--~~~v~~l~~~~~~-~l 427 (479)
. .+.. ....+..++|+|++..+ +++..+ .+.+|+.. +++. .... . ++ ...+..++++|++ .|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2222 33478899999999855 444344 59999984 3433 2222 2 21 2457789999998 55
Q ss_pred E-EEeCCCcEEEEecC
Q psy8895 428 V-SGADNGTMCFWDWR 442 (479)
Q Consensus 428 ~-sg~~dg~i~lWd~~ 442 (479)
+ ++..|+.|.+||+.
T Consensus 246 ~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 246 YACDRTASLITVFSVS 261 (343)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEecCCCEEEEEEEc
Confidence 5 66689999999998
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=8.6e-14 Score=133.53 Aligned_cols=227 Identities=10% Similarity=0.134 Sum_probs=154.5
Q ss_pred CCccEEEEEEcCCCcEEEEEeCC----CeEEEEECCC--Cce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEE
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSAD----KIIKVWDLAT--GKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCW 288 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d----~~i~iWd~~~--~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~w 288 (479)
+......++|+|+|++|++++.+ +.|.+|++.. ++. +.....+......+++ +++++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56667789999999999999886 7999998865 443 3334445556777787 777777766 67899999
Q ss_pred ECCCCCcccCCC------------CCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCC-----------------
Q psy8895 289 DLEYNKAPVQPG------------SMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSA----------------- 338 (479)
Q Consensus 289 d~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~----------------- 338 (479)
++.......... .......+.++.|+|++++++++. .++.+.+|+.+...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543221110 001123467899999999766555 57899999765321
Q ss_pred -------------CCCCCeEEEEe-CCCcEEEEECCCCee--EEEEc---cCCCceEEEEEeCCCcEEEE-EcC--CcEE
Q psy8895 339 -------------TEESHPVITGS-HDCTIRLWDLAAGKS--LCTLT---NHKKSVRSVALHPTLYMFAS-ASP--DNIK 396 (479)
Q Consensus 339 -------------~~~~~~l~sgs-~d~~v~iwd~~~~~~--~~~~~---~h~~~v~~i~~~~~~~~l~s-~s~--d~i~ 396 (479)
.+++..+++++ .+++|.+||+.+++. +..+. .+......++|+|++++++. ... +.+.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 01234455555 689999999987654 33332 23345789999999987644 444 3599
Q ss_pred EEeCC--CCe--EEeeecCCcceEEEEEEcCCC-EEEEEe-CCCcEEEEe--cCCCeEE
Q psy8895 397 QWKCP--EGK--FIQNLPGHNAIINSICVNNEG-VLVSGA-DNGTMCFWD--WRTGYNF 447 (479)
Q Consensus 397 ~w~~~--~~~--~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg~i~lWd--~~~~~~~ 447 (479)
+|++. +++ .+..+.. ...+..++|+|++ +|++++ .++.|.+|+ .++|+..
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 99985 454 3444544 4567789999999 676666 679999965 4566543
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=7.7e-14 Score=132.15 Aligned_cols=224 Identities=13% Similarity=0.169 Sum_probs=169.9
Q ss_pred CccEEEEEEcCCCcEEEEEeCC------------------------CeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCC
Q psy8895 219 LGWVRCVAVEPGNEWFATGSAD------------------------KIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRH 273 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d------------------------~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~ 273 (479)
.+.+.+++++|+|+++++.+.+ +.|.+||..+++....+. ++-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999999999998887 479999999998876654 344578999999999
Q ss_pred CEEEEEECCCcEEEEECCCCC-cccCCCC-------CCCCCCeEEEEEeC-CCCEEEEEe-CCCeEEEEeCCCCC-----
Q psy8895 274 PYLFSCGDDRTVKCWDLEYNK-APVQPGS-------MDSESGIFSMTFDN-SGSRLITTE-ADKTVKLYKEDDSA----- 338 (479)
Q Consensus 274 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~~~~~~~~~----- 338 (479)
.++++...++.|++||..... ....... .........++++| ++..+++.+ .++.|.+|+.+...
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 988888888999999986432 1111110 12233578999999 778777776 68899999854210
Q ss_pred ---------------------CCC-CCeEEEEeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCcEEEEEc---
Q psy8895 339 ---------------------TEE-SHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMFASAS--- 391 (479)
Q Consensus 339 ---------------------~~~-~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s--- 391 (479)
.++ ...+++...++.|++||..+++.+.++. .+...+.+++++| +..++..+
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 012 3455666778899999999888888874 4556789999999 44444432
Q ss_pred ----CC-cEEEEeCCCCeEEeee---cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895 392 ----PD-NIKQWKCPEGKFIQNL---PGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 392 ----~d-~i~~w~~~~~~~~~~~---~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~ 443 (479)
.+ .+.+|+..+++.+..+ .++...+..+++++++ ++++...+++|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22 5899999999998887 3677789999999999 778888899999999753
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=9.8e-15 Score=138.17 Aligned_cols=215 Identities=11% Similarity=0.108 Sum_probs=154.3
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEEecCCc--CEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCCCC---CC
Q psy8895 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVG--SVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSMD---SE 305 (479)
Q Consensus 232 ~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~---~~ 305 (479)
+++++++.++.|.+||+.+++.+..+..... .+..++|+|+++.++ +++.++.|.+||+.+.+......... ..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999988877763322 478899999998664 55667899999998765432211100 01
Q ss_pred CCeEEEEEeCCCCEEEEEe------------CCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEE
Q psy8895 306 SGIFSMTFDNSGSRLITTE------------ADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLW 357 (479)
Q Consensus 306 ~~i~~~~~~~~~~~l~~~~------------~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iw 357 (479)
..+..+.|+|+++.++++. .++.|.+|+..... .++...++++ ++.|++|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 1455789999999988886 57999999976432 1233446666 6899999
Q ss_pred ECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC-C------------------------cEEEEeCCCCeEE-eeecC
Q psy8895 358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP-D------------------------NIKQWKCPEGKFI-QNLPG 411 (479)
Q Consensus 358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d------------------------~i~~w~~~~~~~~-~~~~~ 411 (479)
|+.+++.+..+..+... ..+.|+|++..+..... + .+.+||..+++.. ..+..
T Consensus 160 d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp ETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred ECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 99999888777654311 12377888765543332 2 2578999888764 23445
Q ss_pred CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 412 HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 412 h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+...+..++++|++ +++++ ++.|.+||+++++.++.+.
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 277 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence 66678899999999 67766 7999999999998877664
No 161
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.65 E-value=1.3e-14 Score=152.33 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=157.4
Q ss_pred CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC-----C
Q psy8895 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY-----N 293 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~-----~ 293 (479)
...|.+++|+|| +.++.+. ++.|++||+.+++.. .+..+...+.+++|+|||+.++++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 356899999999 5555543 599999999988664 444566778889999999999885 679999999987 5
Q ss_pred CcccCCCCCCCC-------------CCeEEEEEeCCCCEEEEEe---------------------------------CCC
Q psy8895 294 KAPVQPGSMDSE-------------SGIFSMTFDNSGSRLITTE---------------------------------ADK 327 (479)
Q Consensus 294 ~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~---------------------------------~d~ 327 (479)
+...... .... ..+..+.|+|+++.++.++ .+.
T Consensus 157 ~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 4332111 1111 1246899999999999887 446
Q ss_pred eEEEEeCCCCC-------------------CCCCCeEEEEeCCC-----cEEEEECCCCeeEEEEc--cCCC---ceEEE
Q psy8895 328 TVKLYKEDDSA-------------------TEESHPVITGSHDC-----TIRLWDLAAGKSLCTLT--NHKK---SVRSV 378 (479)
Q Consensus 328 ~i~~~~~~~~~-------------------~~~~~~l~sgs~d~-----~v~iwd~~~~~~~~~~~--~h~~---~v~~i 378 (479)
.|.+|+..... .+++..+++++.|+ .|++||+.+++....+. .+.. .+..+
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 78889875431 12345677777665 89999999984433332 2222 24678
Q ss_pred EEeC--CCcEEEEEcCCc-EEEEeCC-CCeEEeeecCCcceEEE-EEEcCCC-EEE-EEeCCC----cEEEEecCCCe
Q psy8895 379 ALHP--TLYMFASASPDN-IKQWKCP-EGKFIQNLPGHNAIINS-ICVNNEG-VLV-SGADNG----TMCFWDWRTGY 445 (479)
Q Consensus 379 ~~~~--~~~~l~s~s~d~-i~~w~~~-~~~~~~~~~~h~~~v~~-l~~~~~~-~l~-sg~~dg----~i~lWd~~~~~ 445 (479)
+|+| ++.++++++.+. +.+|... ++..+..+..|...+.. ++++|++ .|+ +++.++ .|..||..++.
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9999 999888887664 7888765 66777788888777776 7999998 554 555555 66677777764
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=2.4e-14 Score=136.56 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=130.0
Q ss_pred CCccEEEEEEcCCCcEEEEEeC---CCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSA---DKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLE 291 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~---d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~ 291 (479)
+......++|+|+|+ |++++. ++.|.+||+.+++. +..+..+...+..++|+|++++|++++ .++.+++||+.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445667899999999 555443 68999999987753 344455667788999999999888887 77999999986
Q ss_pred CCCcc---cCCCCC-------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-
Q psy8895 292 YNKAP---VQPGSM-------DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA- 360 (479)
Q Consensus 292 ~~~~~---~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~- 360 (479)
..... ...... .....+.+++|+|+++.+++... ++.|++||+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-------------------------~~~v~~~~~~~ 171 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-------------------------SDKVYVYNVSD 171 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-------------------------TTEEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-------------------------CCEEEEEEECC
Confidence 32111 100000 01234778889998884333333 4455555555
Q ss_pred CCee--EEEEccC-CCceEEEEEeCCCcEEEE-EcCC-cEEEEeCC--CCeE--EeeecCCc------ceEEEEEEcCCC
Q psy8895 361 AGKS--LCTLTNH-KKSVRSVALHPTLYMFAS-ASPD-NIKQWKCP--EGKF--IQNLPGHN------AIINSICVNNEG 425 (479)
Q Consensus 361 ~~~~--~~~~~~h-~~~v~~i~~~~~~~~l~s-~s~d-~i~~w~~~--~~~~--~~~~~~h~------~~v~~l~~~~~~ 425 (479)
.++. +..+..+ ......++|+|+++.++. ...+ .+.+|+.. +++. +..+.... ..+..++++||+
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 2322 1222222 235788999999985444 4444 58999876 3553 22332222 458899999999
Q ss_pred -EE-EEEeCCCcEEEEecC
Q psy8895 426 -VL-VSGADNGTMCFWDWR 442 (479)
Q Consensus 426 -~l-~sg~~dg~i~lWd~~ 442 (479)
+| ++...++.|.+||+.
T Consensus 252 ~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CEEEEEEETTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEC
Confidence 55 666779999999997
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=164.42 Aligned_cols=217 Identities=11% Similarity=0.091 Sum_probs=157.7
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc---CEEEEEEcCCCCEEEEEEC---------CCcEEEEECC
Q psy8895 224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG---SVRGLTVSPRHPYLFSCGD---------DRTVKCWDLE 291 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~---------d~~i~~wd~~ 291 (479)
+++|+|+|+++++ +.|+.|++||+.+++....+..|.. .+.+++|||||++|++++. |+.|++||++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 5689999976555 4699999999999988777766644 4889999999999998876 7899999998
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------------------- 338 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------------------- 338 (479)
+++..... .....+..++|+|+|+.++.+. ++.|++|+.....
T Consensus 99 ~g~~~~~~---~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGN---ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSS---CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccce---ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 76542100 1123577899999999998875 7899999874321
Q ss_pred --CCCCCeEEEEeCCC----------------------------------cEEEEECCCCeeE--------EEEccCCCc
Q psy8895 339 --TEESHPVITGSHDC----------------------------------TIRLWDLAAGKSL--------CTLTNHKKS 374 (479)
Q Consensus 339 --~~~~~~l~sgs~d~----------------------------------~v~iwd~~~~~~~--------~~~~~h~~~ 374 (479)
++++..|++++.|. +|++||+.+++.. ..+.+|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 12345678777552 7889999987642 123467888
Q ss_pred eEEEEEeCCCcEEEEEcCC-----cEEEEe----CCCCeEEeee----cCCcceEE-----EEEEcCCC-EEE--EEeCC
Q psy8895 375 VRSVALHPTLYMFASASPD-----NIKQWK----CPEGKFIQNL----PGHNAIIN-----SICVNNEG-VLV--SGADN 433 (479)
Q Consensus 375 v~~i~~~~~~~~l~s~s~d-----~i~~w~----~~~~~~~~~~----~~h~~~v~-----~l~~~~~~-~l~--sg~~d 433 (479)
+.+++|+||++++++..+. .|.+|| ..+++....+ .+|.+.+. .+.|+||+ .|+ +...+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998877764322 278899 7777766555 46777776 78999998 443 45456
Q ss_pred Cc--EEEEecCCCe
Q psy8895 434 GT--MCFWDWRTGY 445 (479)
Q Consensus 434 g~--i~lWd~~~~~ 445 (479)
|. |.+||+.++.
T Consensus 335 g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 335 GYKHIHYIKDTVEN 348 (719)
T ss_dssp SCEEEEEESSCSTT
T ss_pred CceEEEEEECCCCc
Confidence 64 6666766654
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.5e-13 Score=125.69 Aligned_cols=224 Identities=12% Similarity=0.221 Sum_probs=160.9
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe------cCCcCEEEEEE-cCCCCEEEEEEC-CCcEEEE
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT------GHVGSVRGLTV-SPRHPYLFSCGD-DRTVKCW 288 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~------~h~~~v~~v~~-~~~~~~l~s~~~-d~~i~~w 288 (479)
+|.....+++++++|+++++.+.++.|.+||.. ++....+. ++...+..+++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456678899999999999998899999999987 55555553 23457889999 577766666533 8899999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeC
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSH 350 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~ 350 (479)
|.. ++...... ......+..+++++++..+++...++.|.+|+..... ..+...+++.+.
T Consensus 106 d~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 NQY-GQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp CTT-SCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred CCC-CcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 943 33222111 1223467899999999888877788899999854321 012334556667
Q ss_pred CCcEEEEECCCCeeEEEEccC--CCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeecCCc--ceEEEEEEcCC
Q psy8895 351 DCTIRLWDLAAGKSLCTLTNH--KKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLPGHN--AIINSICVNNE 424 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~--~~v~~l~~~~~ 424 (479)
++.|++||.. ++.+.++..+ ...+..+++++++.++++...+ .|.+|+. +++.+..+..+. ..+..++++++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 8999999974 5566666443 3578999999999999888754 6999995 566666665443 34778999999
Q ss_pred CEEEEEeCCCcEEEEecCCCe
Q psy8895 425 GVLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 425 ~~l~sg~~dg~i~lWd~~~~~ 445 (479)
+.|+.++.|++|++|++....
T Consensus 262 g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 262 GSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp TEEEEEETTTEEEEEECSCCC
T ss_pred CcEEEECCCCeEEEEEccccc
Confidence 954444679999999986543
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=4.9e-14 Score=136.45 Aligned_cols=214 Identities=10% Similarity=-0.002 Sum_probs=138.7
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEE--EcCCCCEEEEE----------------------E
Q psy8895 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT--VSPRHPYLFSC----------------------G 280 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s~----------------------~ 280 (479)
..|+|||+.|+.++.++.|.+||+.+++....+..+...+.... +++++..++.. +
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 36899999999999999999999999988776666665554433 48999988743 2
Q ss_pred CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCC------CeEEEEeCCCCC---------------
Q psy8895 281 DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEAD------KTVKLYKEDDSA--------------- 338 (479)
Q Consensus 281 ~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~--------------- 338 (479)
.+..|.+||+.+++..... .....+..+.|+| +++.++..... ..|.+++.....
T Consensus 166 ~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp CCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred CcceEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 3467999999876533221 2234578899999 99988776653 367777654321
Q ss_pred ---CCCCCeEEEEeC-CC----cEEEEECCCCee--EEEEccCCCc---eEEEEEeCCCcEEEEE---------c-CCcE
Q psy8895 339 ---TEESHPVITGSH-DC----TIRLWDLAAGKS--LCTLTNHKKS---VRSVALHPTLYMFASA---------S-PDNI 395 (479)
Q Consensus 339 ---~~~~~~l~sgs~-d~----~v~iwd~~~~~~--~~~~~~h~~~---v~~i~~~~~~~~l~s~---------s-~d~i 395 (479)
.+++..|+..+. ++ .|++||+.+++. +..+.++... ...+.|+|++..++.. . ...|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 122333443332 22 399999998864 3333331100 1123689998766643 2 2259
Q ss_pred EEEeCCCCeEEeeecCCcc-----------eEEEEEEcCCC-EEEEE-eCCCcEEEEecC
Q psy8895 396 KQWKCPEGKFIQNLPGHNA-----------IINSICVNNEG-VLVSG-ADNGTMCFWDWR 442 (479)
Q Consensus 396 ~~w~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~-~l~sg-~~dg~i~lWd~~ 442 (479)
.+||..+++. ..+..|.. .+..++|+||+ .|+.. ..+|...||.+.
T Consensus 323 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 323 YVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 9999988765 34444444 46778999999 56544 457877777654
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=1.9e-13 Score=142.29 Aligned_cols=203 Identities=13% Similarity=0.021 Sum_probs=135.8
Q ss_pred CCccEEEEEEcCCCcEEEEEeCC----------CeEEEEECCC------CceEEEEe-cCCcCEEEEEEcCCCCEEEEEE
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSAD----------KIIKVWDLAT------GKLKLSLT-GHVGSVRGLTVSPRHPYLFSCG 280 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d----------~~i~iWd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~ 280 (479)
|...+.+++|+|||+.|++++.| ..|.+||+.+ +.. ..+. .+...+..++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence 56678899999999999998877 5899999988 554 3455 5566788899999999998877
Q ss_pred CC--------CcEEEEECC-CCC--cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEe
Q psy8895 281 DD--------RTVKCWDLE-YNK--APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGS 349 (479)
Q Consensus 281 ~d--------~~i~~wd~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs 349 (479)
.+ ..|++||++ ++. ..... ...+...+..+.|+|+++.++++..++..
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-~~~~~~~~~~~~~spdg~l~~~~~~~~~~-------------------- 265 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTL-LGGPEEAIAQAEWAPDGSLIVATDRTGWW-------------------- 265 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEE-EEETTBCEEEEEECTTSCEEEEECTTSSC--------------------
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEe-CCCCCceEcceEECCCCeEEEEECCCCCe--------------------
Confidence 55 379999997 341 11111 11124567889999998865555544432
Q ss_pred CCCcEEEEECCCCeeEEEEccCCCc--------eEEEEEeCCCcEEEEEcCCcEEEE--eCCCCeEEeeecCCcceEEEE
Q psy8895 350 HDCTIRLWDLAAGKSLCTLTNHKKS--------VRSVALHPTLYMFASASPDNIKQW--KCPEGKFIQNLPGHNAIINSI 419 (479)
Q Consensus 350 ~d~~v~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~~~~~l~s~s~d~i~~w--~~~~~~~~~~~~~h~~~v~~l 419 (479)
.|.+||+.+++.......+... +..++|+|++.++++++.+.+.+| |..+++ +..+..|...+..+
T Consensus 266 ---~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 266 ---NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp ---EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred ---EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 3444444444332222222211 567899999998888877447777 655555 67788888888877
Q ss_pred -EEcCCC-EEEEEeCCCc--EEEEecCCCeE
Q psy8895 420 -CVNNEG-VLVSGADNGT--MCFWDWRTGYN 446 (479)
Q Consensus 420 -~~~~~~-~l~sg~~dg~--i~lWd~~~~~~ 446 (479)
.++++. .+++++.+.. |.+||+.+++.
T Consensus 342 ~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 342 LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 666666 4555666654 44556667754
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=5.1e-13 Score=128.11 Aligned_cols=229 Identities=10% Similarity=0.100 Sum_probs=154.9
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC------CcCEEEEEEcCCCCEE
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH------VGSVRGLTVSPRHPYL 276 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h------~~~v~~v~~~~~~~~l 276 (479)
..+..+..+ .++|+|||++++.++ .++.|.+||..+++.+..+... ......++++|||++|
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 344445455 899999999998886 3678999999999888776532 2345678999999999
Q ss_pred EEEEC--CCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCC-C-------------
Q psy8895 277 FSCGD--DRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDS-A------------- 338 (479)
Q Consensus 277 ~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~-~------------- 338 (479)
+++.. +++|.+||+++.+.... .. . .....+.+.|.+ ..+++.+.|+.+.+++.... .
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~---~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVEDVTA---A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEGG---G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEECCCCCCeEEEEECCCCcEEEEEec---C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 88763 68999999987654322 11 1 112223344443 45566666666666654321 0
Q ss_pred ---------CCCCCeEEEEeCCCcEEEEECCCCee--EEEEccCC----------CceEEEEEeCCCcE-EEEEc-----
Q psy8895 339 ---------TEESHPVITGSHDCTIRLWDLAAGKS--LCTLTNHK----------KSVRSVALHPTLYM-FASAS----- 391 (479)
Q Consensus 339 ---------~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~h~----------~~v~~i~~~~~~~~-l~s~s----- 391 (479)
......++..+.+++|.++|+..... ...+.-.. .....++|+|++.. +++.+
T Consensus 199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 01123455667889999999875432 22221100 11123789998554 44433
Q ss_pred ------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC--eEEEEE
Q psy8895 392 ------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG--YNFQRL 450 (479)
Q Consensus 392 ------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~--~~~~~~ 450 (479)
.+.+.+||..+++.+.+++.+. +..++++||+ +|++++. ++|.+||.+++ +.++++
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 2259999999999999998887 8999999999 7777776 99999999999 877654
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.60 E-value=4.9e-14 Score=134.08 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=144.5
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCCC
Q psy8895 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSM 302 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~ 302 (479)
+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+++++........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4567888999999999999999999998888776553 2567899999998665 5557899999999876543221100
Q ss_pred CC----CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe---eEEEEccCCCce
Q psy8895 303 DS----ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK---SLCTLTNHKKSV 375 (479)
Q Consensus 303 ~~----~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---~~~~~~~h~~~v 375 (479)
.. ...+..+.|+|+++.++++..+... .. . .-+..++.|.+||+.+++ .+..+.. ...+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~-------~----~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~ 150 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQR--LN-------D----HYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQV 150 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEE--CS-------S----CEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSC
T ss_pred cccccccccccceEECCCCCEEEEEcccccc--cc-------c----ccccCCCeEEEEECCCccccceeeeccC-CCcc
Confidence 00 1225678899999888876643110 00 0 012234688899988743 3334433 3468
Q ss_pred EEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCc------------------------------------------
Q psy8895 376 RSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHN------------------------------------------ 413 (479)
Q Consensus 376 ~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~------------------------------------------ 413 (479)
.+++|+|++.+++ ++. .+.+||..+++....+..+.
T Consensus 151 ~~~~~s~dg~l~~-~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 151 YLMRAADDGSLYV-AGP-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp CCEEECTTSCEEE-ESS-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred cceeECCCCcEEE-ccC-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 8999999999555 433 39999999888776654331
Q ss_pred --------------------------ceEEEEEEcC-CC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 414 --------------------------AIINSICVNN-EG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 414 --------------------------~~v~~l~~~~-~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
..+..++++| ++ +++++ ++.|.+||+++++.++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 292 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN 292 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence 1234566778 88 66666 8899999999998877665
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=7.4e-12 Score=115.76 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=127.0
Q ss_pred cEEEEEE-cCCCcEEEEEeC-CCeEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 221 WVRCVAV-EPGNEWFATGSA-DKIIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 221 ~v~~~~~-~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
...++++ .++++++++... ++.|.+|| .+++.+..+.. +...+..+++++++.++++...++.|.+||.... ...
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~ 155 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLH 155 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEE
Confidence 4567788 467777777643 78999999 56766666643 3457899999999998887778899999996532 221
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeCCC-cEEEEE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSHDC-TIRLWD 358 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~d~-~v~iwd 358 (479)
..........+..+++++++..+++...++.|.+|+..... ..+...+++...++ .|++||
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 11111223457899999999877777788999999864321 01234556666675 999999
Q ss_pred CCCCeeEEEEccCC--CceEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895 359 LAAGKSLCTLTNHK--KSVRSVALHPTLYMFASASPDNIKQWKCPEG 403 (479)
Q Consensus 359 ~~~~~~~~~~~~h~--~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~ 403 (479)
. .++.+..+..+. ..+.+++++|++.++++..++.|.+|+....
T Consensus 236 ~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 236 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred C-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 5 466666665443 3478999999999988866556999987543
No 170
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.3e-12 Score=135.18 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=160.9
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCC-----eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-------
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADK-----IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT------- 284 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~-----~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~------- 284 (479)
+|...+..++|+|||++|+.++.++ .|++||+.+++.......+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555788999999999988766543 8999999999876532222 23567899999999998887765
Q ss_pred ---------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEeCCC------CC--C-
Q psy8895 285 ---------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEA-----DKTVKLYKEDD------SA--T- 339 (479)
Q Consensus 285 ---------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~------~~--~- 339 (479)
|++|++.+.+.. .......+...+..+.|+|++++++..+. +..+.+++... .. .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999776532 11111122345778999999999887764 56788898754 21 1
Q ss_pred --------------CCCCeEEEEeC-C---CcEEEEECCCCe--eEEEEccCCC--ceEEEEEeCCCcEEEEEcCCc---
Q psy8895 340 --------------EESHPVITGSH-D---CTIRLWDLAAGK--SLCTLTNHKK--SVRSVALHPTLYMFASASPDN--- 394 (479)
Q Consensus 340 --------------~~~~~l~sgs~-d---~~v~iwd~~~~~--~~~~~~~h~~--~v~~i~~~~~~~~l~s~s~d~--- 394 (479)
.++..++..+. + ..|.+||+.++. ....+..|.. .+..+++++++.++++...+.
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 01233433333 2 369999998764 2344544543 688899998888888877663
Q ss_pred EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895 395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY 445 (479)
Q Consensus 395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~ 445 (479)
+.+|+..+++.+..+..+.+.+..+.+++++ .++ +.+ ..++|.+||+.+|+
T Consensus 361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7778887888778888888889999999887 443 333 35789999999887
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=1.3e-11 Score=116.83 Aligned_cols=164 Identities=11% Similarity=0.203 Sum_probs=118.5
Q ss_pred CCccEEEEEEcC-CCcEEEEEe-CCCeEEEEECCCCceEEEEec----------CCcCEEEEEEcCC-CCEEEEEECCCc
Q psy8895 218 HLGWVRCVAVEP-GNEWFATGS-ADKIIKVWDLATGKLKLSLTG----------HVGSVRGLTVSPR-HPYLFSCGDDRT 284 (479)
Q Consensus 218 h~~~v~~~~~~~-~g~~l~sgs-~d~~i~iWd~~~~~~~~~~~~----------h~~~v~~v~~~~~-~~~l~s~~~d~~ 284 (479)
+......++++| +|.++++.+ .++.|++|| .+++.+..+.. +-.....++++|+ +.++++...++.
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~ 219 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR 219 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence 344568899999 888888887 689999999 56777666642 2234789999998 767777778899
Q ss_pred EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS 364 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~ 364 (479)
|++||.++++.............+..+.+.| +..+...+ . ..++.+.+.+|++||..+++.
T Consensus 220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g---~---------------~~v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 220 IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG---K---------------PYFGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC---C---------------CCTTCSCCCCEEEEETTTCCE
T ss_pred EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC---C---------------EEeccCCCcEEEEEEcCCCeE
Confidence 9999997555433322223345678888888 33332211 1 123344567899999999998
Q ss_pred EEEEc---cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCC
Q psy8895 365 LCTLT---NHKKSVRSVALHPTLYMFASASPD-NIKQWKCP 401 (479)
Q Consensus 365 ~~~~~---~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~ 401 (479)
+.++. .+......|+++|++.++++...+ .|.+|+..
T Consensus 281 ~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 281 IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 88873 566778999999999888888766 59999863
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=1.5e-12 Score=125.14 Aligned_cols=203 Identities=11% Similarity=0.137 Sum_probs=131.8
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEEecC-CcCEEEEEEcCCCCE--EEEEE-------------CC
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLA-TGKLKLSLTGH-VGSVRGLTVSPRHPY--LFSCG-------------DD 282 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~--l~s~~-------------~d 282 (479)
..+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+|++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 456789999999999999988 99999997 77664332210 123456889999984 44543 68
Q ss_pred CcEEEEECCC-CCcccCCC--CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEEC
Q psy8895 283 RTVKCWDLEY-NKAPVQPG--SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDL 359 (479)
Q Consensus 283 ~~i~~wd~~~-~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~ 359 (479)
+.+.+|++.. ++...... .......+..+.|+|++++++++.. .++.|++||+
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~------------------------~~~~v~~~~~ 174 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL------------------------TANKLWTHRK 174 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------------------------TTTEEEEEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC------------------------CCCEEEEEEE
Confidence 9999999963 33211110 0123356888999999887765432 2345666666
Q ss_pred C-CCee--EEEEc--cCCCceEEEEEeCCCcEEEEEcC-C-cEEEEeCC--CCeEE------eeec----CCcc------
Q psy8895 360 A-AGKS--LCTLT--NHKKSVRSVALHPTLYMFASASP-D-NIKQWKCP--EGKFI------QNLP----GHNA------ 414 (479)
Q Consensus 360 ~-~~~~--~~~~~--~h~~~v~~i~~~~~~~~l~s~s~-d-~i~~w~~~--~~~~~------~~~~----~h~~------ 414 (479)
. +++. +..+. .|...++.++|+|+++.++.++. + .+.+|+.. ++++. ..++ +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 5 4433 22333 23566899999999987766553 3 58888654 56542 2232 2232
Q ss_pred eEEEEE-EcCCC-EEEEEeCC-C-----cEEEEecC-CCeEE
Q psy8895 415 IINSIC-VNNEG-VLVSGADN-G-----TMCFWDWR-TGYNF 447 (479)
Q Consensus 415 ~v~~l~-~~~~~-~l~sg~~d-g-----~i~lWd~~-~~~~~ 447 (479)
.+..++ ++||+ +|+++..+ . +|.+|++. +|...
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 588999 99999 66655432 2 89999996 66543
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=6.9e-13 Score=128.50 Aligned_cols=209 Identities=9% Similarity=-0.068 Sum_probs=133.9
Q ss_pred EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE-------------------EEEcCCCCEEEEE-----EC
Q psy8895 226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG-------------------LTVSPRHPYLFSC-----GD 281 (479)
Q Consensus 226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~-----~~ 281 (479)
.|+|||++|+.++.++.|.+||+.+++.......+...... +.++|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 57899999999999999999999988776555545443322 3457777765543 35
Q ss_pred CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCC------CeEEEEeCCCCC----------------
Q psy8895 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEAD------KTVKLYKEDDSA---------------- 338 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~---------------- 338 (479)
+..|.+||+.+++..... .....+..+.|+| ++..++..+.+ ..|.+++.....
T Consensus 167 ~~~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred cceEEEEECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 668999999775543221 2344678899999 77766665543 357777754321
Q ss_pred --CCCCCeEEEEeCC-----CcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEc-----------------CC
Q psy8895 339 --TEESHPVITGSHD-----CTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASAS-----------------PD 393 (479)
Q Consensus 339 --~~~~~~l~sgs~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s-----------------~d 393 (479)
.+++..++.++.+ +.|++||+.+++...... .. ... +.|+| ++.+++.++ ..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 1123445555433 449999998876543222 11 233 88999 998887643 13
Q ss_pred cEEEEeCCCCeEEeeecCCcc-----------eEEEEEEcCCC-EEEEEe-CCCcEEEEec
Q psy8895 394 NIKQWKCPEGKFIQNLPGHNA-----------IINSICVNNEG-VLVSGA-DNGTMCFWDW 441 (479)
Q Consensus 394 ~i~~w~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~-~l~sg~-~dg~i~lWd~ 441 (479)
.+.+||..+++.. .+..+.. .+..++++|++ .|+..+ .++...+|.+
T Consensus 321 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 321 FLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 4899999877643 3433433 24567889998 666555 4566666654
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.49 E-value=8e-12 Score=116.21 Aligned_cols=224 Identities=10% Similarity=0.081 Sum_probs=157.3
Q ss_pred EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
.+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.++++++++.++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445667788999999998 7888888999999999887 556677778899999999999887776778999999866
Q ss_pred CCcccCCCC--CCCCCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEeCCCCC---------------
Q psy8895 293 NKAPVQPGS--MDSESGIFSMTFDNSGSRLITTEA-----------------DKTVKLYKEDDSA--------------- 338 (479)
Q Consensus 293 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~~~~~~~~~--------------- 338 (479)
++....... ......+..++++++|...++.+. .+.|..++.....
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAF 179 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEE
Confidence 543211100 011234567899999988776321 2345555443110
Q ss_pred CCCCCeEEEEeCCCcEEEEECC-CCee---EEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcc
Q psy8895 339 TEESHPVITGSHDCTIRLWDLA-AGKS---LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNA 414 (479)
Q Consensus 339 ~~~~~~l~sgs~d~~v~iwd~~-~~~~---~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~ 414 (479)
.++...+++.+.++.|++||+. .++. ...+..+...+..+++++++.++++. .+.|.+|+.. ++.+..+..+..
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC
Confidence 1234456777778999999987 4443 23333345567789999999988888 6679999975 777777777777
Q ss_pred eEEEEEE-cCCC-EEEEEeCCCcEEEEecCC
Q psy8895 415 IINSICV-NNEG-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 415 ~v~~l~~-~~~~-~l~sg~~dg~i~lWd~~~ 443 (479)
+++++| .+++ .|+.++.++ +.-++.++
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 888899 5776 777777764 33344444
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.49 E-value=7e-13 Score=139.73 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=133.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC-----EEEEEEcCCCCEEEEEECC---------CcEEE
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-----VRGLTVSPRHPYLFSCGDD---------RTVKC 287 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~d---------~~i~~ 287 (479)
..+++|+|||++++++ |+.|++||+.++++...+.+|... ...++|||||++++.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 4578999999999987 999999999999988888887643 2347899999999988776 56679
Q ss_pred EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE-
Q psy8895 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC- 366 (479)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~- 366 (479)
||+++++.... ......+...+|+|+|+.++.+. ++. |++||+.+++...
T Consensus 97 ~d~~~~~~~~l---~~~~~~~~~~~~SPdG~~la~~~-~~~-------------------------i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 97 YDLNKRQLITE---ERIPNNTQWVTWSPVGHKLAYVW-NND-------------------------IYVKIEPNLPSYRI 147 (740)
T ss_dssp EETTTTEECCS---SCCCTTEEEEEECSSTTCEEEEE-TTE-------------------------EEEESSTTSCCEEC
T ss_pred EECCCCcEEEc---ccCCCcceeeEECCCCCEEEEEE-CCe-------------------------EEEEECCCCceEEE
Confidence 99988764322 22345789999999999877553 344 4444444433221
Q ss_pred EEccCC-----------------CceEEEEEeCCCcEEEEEcCC------------------------------------
Q psy8895 367 TLTNHK-----------------KSVRSVALHPTLYMFASASPD------------------------------------ 393 (479)
Q Consensus 367 ~~~~h~-----------------~~v~~i~~~~~~~~l~s~s~d------------------------------------ 393 (479)
+..++. +...++.||||++.|+..+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 111111 122357888888877765311
Q ss_pred -cEEEEeCCC---Ce--EEeeec------CCcceEEEEEEcCCC-EEEEEe----CCCcEEEEecCCCe
Q psy8895 394 -NIKQWKCPE---GK--FIQNLP------GHNAIINSICVNNEG-VLVSGA----DNGTMCFWDWRTGY 445 (479)
Q Consensus 394 -~i~~w~~~~---~~--~~~~~~------~h~~~v~~l~~~~~~-~l~sg~----~dg~i~lWd~~~~~ 445 (479)
.+.+||+.+ ++ ....+. +|...+..+.++||+ .++... .+..|.+||+.+|+
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 367789887 62 222333 478889999999999 455432 33479999999987
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=3.3e-12 Score=123.50 Aligned_cols=222 Identities=16% Similarity=0.043 Sum_probs=143.3
Q ss_pred EecCCCccEEE-----EEEcCCCcEEEEEeC-CC--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895 214 VISGHLGWVRC-----VAVEPGNEWFATGSA-DK--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285 (479)
Q Consensus 214 ~~~~h~~~v~~-----~~~~~~g~~l~sgs~-d~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 285 (479)
.+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+....|+||++.|+.++.++.|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL 104 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence 44555555555 789999999998887 66 48888999988776666666555567899999999999999999
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEE--EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC-----eEEEEeCCCcEEEEE
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFS--MTFDNSGSRLITTEADKTVKLYKEDDSATEESH-----PVITGSHDCTIRLWD 358 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~l~sgs~d~~v~iwd 358 (479)
++||+.+++...... .+...+.. ..+++++..++....+ +.+ ...... .......+..|.+||
T Consensus 105 ~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 105 MRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIR------RED--WVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEE------GGG--CCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEECCCCcceeeee--chhhcccccceeECCCCCeecccccc------Ccc--cccccccchhhhhhccCCcceEEEEE
Confidence 999998765432110 11122222 2336777666532110 000 000000 011123456899999
Q ss_pred CCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-------cEEEEeCCCCeEEeeecCCc--ceEEEEEEcCCC-EE
Q psy8895 359 LAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-------NIKQWKCPEGKFIQNLPGHN--AIINSICVNNEG-VL 427 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-------~i~~w~~~~~~~~~~~~~h~--~~v~~l~~~~~~-~l 427 (479)
+.+++.. .+..+...+..+.|+| ++..++..+.+ .+.+++...++.. .+..+. ..+..+.|+||| .|
T Consensus 175 ~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 175 LKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp TTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCE
T ss_pred CCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEE
Confidence 9988654 4445667789999999 99877665532 4777787655443 343443 367888999999 56
Q ss_pred EEEeC--CC---cEEEEecCCCeEE
Q psy8895 428 VSGAD--NG---TMCFWDWRTGYNF 447 (479)
Q Consensus 428 ~sg~~--dg---~i~lWd~~~~~~~ 447 (479)
+..+. ++ .|.+||+.+|+..
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEE
T ss_pred EEEecCCCCCcceEEEEecCCCceE
Confidence 54332 22 3999999998753
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=8.5e-11 Score=111.09 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=151.5
Q ss_pred EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEE
Q psy8895 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCW 288 (479)
Q Consensus 213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~w 288 (479)
..+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.++++++++.++++...+ +.|.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence 4556677778999999999988889899999999999887765544566789999999999888777666 689999
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCC----------------CCCCCeE-
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA------DKTVKLYKEDDSA----------------TEESHPV- 345 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~----------------~~~~~~l- 345 (479)
|.+................+..+.+++++...++... .+.|..++..... .++...+
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEE
Confidence 9876553211111123456889999999987776653 2345555443211 1223334
Q ss_pred EEEeCCCcEEEEECCC-CeeEEE--------EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc-
Q psy8895 346 ITGSHDCTIRLWDLAA-GKSLCT--------LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA- 414 (479)
Q Consensus 346 ~sgs~d~~v~iwd~~~-~~~~~~--------~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~- 414 (479)
++.+.++.|.+||+.+ ++.+.. +.++ ..+..+++++++.++++...+ .|.+|+. +++.+..+..+..
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~ 275 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 275 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCc
Confidence 4555678999999964 332221 1222 467889999999988887654 6999998 5666666544432
Q ss_pred -----eEEEEEEcCCC-EEEEEeCCC
Q psy8895 415 -----IINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 415 -----~v~~l~~~~~~-~l~sg~~dg 434 (479)
.+.++++++|+ .|+.++.++
T Consensus 276 ~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 276 EGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp GTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cccccCcceEEECCCCCEEEEEeCcc
Confidence 68889999886 665554443
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=2.5e-12 Score=134.54 Aligned_cols=226 Identities=10% Similarity=-0.015 Sum_probs=150.7
Q ss_pred CCCccEEEEEEcCCCcEEE-----EEeCCCeEEEEECCCCceEEEEecCCcCE--EEEEEcCCCCEEEEEECCCc-----
Q psy8895 217 GHLGWVRCVAVEPGNEWFA-----TGSADKIIKVWDLATGKLKLSLTGHVGSV--RGLTVSPRHPYLFSCGDDRT----- 284 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~-----sgs~d~~i~iWd~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d~~----- 284 (479)
+|...+.+++|+|||++|| +|+.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5666789999999999988 45556789999999987641 1122222 57899999999999888776
Q ss_pred --------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEeCCCCCC-----------
Q psy8895 285 --------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEADK----TVKLYKEDDSAT----------- 339 (479)
Q Consensus 285 --------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~----------- 339 (479)
|++|++.+.... .......+...+..+.++|+|++++..+.++ .+.+++......
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 999999876532 1111122334678999999999888777655 455554322111
Q ss_pred ----CCCCeEEEEe---CCCcEEEEECCCCee--EEEEccC--CCceEEEEEeCCCcEEEEEcCCc-EEEEeCC-CCeEE
Q psy8895 340 ----EESHPVITGS---HDCTIRLWDLAAGKS--LCTLTNH--KKSVRSVALHPTLYMFASASPDN-IKQWKCP-EGKFI 406 (479)
Q Consensus 340 ----~~~~~l~sgs---~d~~v~iwd~~~~~~--~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~-~~~~~ 406 (479)
.++..++.+. .++.|.+||+.+++. ...+..| ...+..++++ ++.++++...+. .++|... +++..
T Consensus 276 ~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 276 EVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 1223333443 257899999987653 2333333 4568889998 667777776663 5555432 45566
Q ss_pred eeecCC-cceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895 407 QNLPGH-NAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY 445 (479)
Q Consensus 407 ~~~~~h-~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~ 445 (479)
..+..+ .+.+..+.+++++ .++ +.+ ..++|.+||+.+|+
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666655 6678888888887 544 332 35789999999886
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=5.4e-12 Score=131.21 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=158.0
Q ss_pred ecCCCccEEEEEEcCCCcEEEEE--eCCCeEEEEECCCCceEEEEecCCcCEE---------EEEEc--CCCCE-EEEEE
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATG--SADKIIKVWDLATGKLKLSLTGHVGSVR---------GLTVS--PRHPY-LFSCG 280 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sg--s~d~~i~iWd~~~~~~~~~~~~h~~~v~---------~v~~~--~~~~~-l~s~~ 280 (479)
+.+|...+..+++++++.++++. +.++...||....+.....+..|...+. ...++ ||++. |+.++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 45688899999999887777777 5688999999655555566776765555 55565 99998 76554
Q ss_pred C-CCcEEEEECC--C-CCcccCCCCCC---CCCCeEEEEEeCCCCEEEEEeCC----------CeEEEEeCCC------C
Q psy8895 281 D-DRTVKCWDLE--Y-NKAPVQPGSMD---SESGIFSMTFDNSGSRLITTEAD----------KTVKLYKEDD------S 337 (479)
Q Consensus 281 ~-d~~i~~wd~~--~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d----------~~i~~~~~~~------~ 337 (479)
. +..|.++++. . +... ...... +...+..++|+|+++.++.++.+ ..|.+|+... .
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 3 5566677765 2 2221 111111 23457889999999999988876 4788898765 2
Q ss_pred C----C-------------CCCCeEEEEeCC--------CcEEEEECC-CC---eeEEEEccCCCceEEEEEeCCCcEEE
Q psy8895 338 A----T-------------EESHPVITGSHD--------CTIRLWDLA-AG---KSLCTLTNHKKSVRSVALHPTLYMFA 388 (479)
Q Consensus 338 ~----~-------------~~~~~l~sgs~d--------~~v~iwd~~-~~---~~~~~~~~h~~~v~~i~~~~~~~~l~ 388 (479)
. . +++..|+.++.+ ..|++||+. ++ +......+|...+..+.|+||+++++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 1 1 234557766654 379999999 56 34333445678899999999999777
Q ss_pred EEcCC---cEEEEeCCCCeEEeeecCCcce--------EEEEEEcCCC-EEEEEeCCCcEEEE--ecCCCe
Q psy8895 389 SASPD---NIKQWKCPEGKFIQNLPGHNAI--------INSICVNNEG-VLVSGADNGTMCFW--DWRTGY 445 (479)
Q Consensus 389 s~s~d---~i~~w~~~~~~~~~~~~~h~~~--------v~~l~~~~~~-~l~sg~~dg~i~lW--d~~~~~ 445 (479)
+++.+ .+..|+..+++......++... +..+++++++ ++++++. +.++|| |..++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 77655 3677777677665544444332 4578888888 7788888 999999 555554
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=2.9e-11 Score=110.53 Aligned_cols=222 Identities=9% Similarity=0.035 Sum_probs=153.0
Q ss_pred cEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895 221 WVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 299 (479)
...+++++++|++++ +.+.++.|.+||..++........+...+.++++++++.++++.. ++.|..||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 567899999999777 557789999999866543322223334678899999998666655 889999998654322111
Q ss_pred CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCC
Q psy8895 300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAG 362 (479)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~ 362 (479)
......+..+++++++...++...++.|..|+...... .+....++...++.|.+||....
T Consensus 104 --~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 104 --FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp --CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred --cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 12224678999999998777777788888886543211 12334455556788999998876
Q ss_pred eeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895 363 KSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd 440 (479)
........+...+..+++++++.++++...+ .|.+|+............+...+.++++++++ .+++...+++|++++
T Consensus 182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 5443333333678999999999888887655 59999986654433333344578899999988 778888899999999
Q ss_pred cCCCe
Q psy8895 441 WRTGY 445 (479)
Q Consensus 441 ~~~~~ 445 (479)
....+
T Consensus 262 ~~~~~ 266 (270)
T 1rwi_B 262 SLEHH 266 (270)
T ss_dssp CCGGG
T ss_pred CCCcc
Confidence 87654
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=3.5e-10 Score=114.27 Aligned_cols=239 Identities=14% Similarity=0.091 Sum_probs=156.4
Q ss_pred EEEEEc----CCCcEEEEEeC-CCeEEEEECCCCceEEEEecC----------C-cCEEEEEEcCCCCEE-EEEECCCcE
Q psy8895 223 RCVAVE----PGNEWFATGSA-DKIIKVWDLATGKLKLSLTGH----------V-GSVRGLTVSPRHPYL-FSCGDDRTV 285 (479)
Q Consensus 223 ~~~~~~----~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h----------~-~~v~~v~~~~~~~~l-~s~~~d~~i 285 (479)
..++|+ |||++++.++. ++++.++|..+.+.+..+... . ..+..+..+++++.+ ++...+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 356788 69988776665 589999999999888776522 1 257788888886654 455677999
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCC----------C-----------CCC
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSAT----------E-----------ESH 343 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~----------~-----------~~~ 343 (479)
.++|........ ............+.|+|++++++++. .+++|.++|...... + ...
T Consensus 323 ~~vd~~~~~~~~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 323 LLVDYTDLNNLK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp EEEETTCSSEEE-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred EEEecCCCccce-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 999986532111 00112223456788999999887665 567888888654210 0 112
Q ss_pred eE-EEEe-CCCcEEEEECCC-------CeeEEEEccCCCceEEEEEeCCCcEEEEEc--------CCcEEEEeCCCC---
Q psy8895 344 PV-ITGS-HDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVALHPTLYMFASAS--------PDNIKQWKCPEG--- 403 (479)
Q Consensus 344 ~l-~sgs-~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--------~d~i~~w~~~~~--- 403 (479)
.+ +++. .+++|.++|... .+.+.+++.....-..+..+|+++.+.... .+.|.++|..+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 23 3443 468999999987 667888775433334577899987666544 236999998766
Q ss_pred --e-EEeeec--------CCcceEEEEEEcCCC--EEEEEe----CCCcEEEEecCCCeEEEEEEEeEecCCCCCceEE
Q psy8895 404 --K-FIQNLP--------GHNAIINSICVNNEG--VLVSGA----DNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF 465 (479)
Q Consensus 404 --~-~~~~~~--------~h~~~v~~l~~~~~~--~l~sg~----~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (479)
. ....+. .-...+..+.|+++| .++|.. .++.|.++|.+|++...+++- ...+++++-|
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~---~~~~~P~g~f 557 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD---ERLVTPTGKF 557 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC---TTCCSEEEEE
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC---CcccCCCeee
Confidence 1 112221 123468889999998 345533 479999999999987765543 2244555444
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=4.5e-11 Score=109.87 Aligned_cols=211 Identities=9% Similarity=0.048 Sum_probs=154.4
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCe
Q psy8895 230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGI 308 (479)
Q Consensus 230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i 308 (479)
.++.|++++.|+.|.+||.++|+.++.+..+. ..+.++.++|+|++++ +.++.|..||. +++....... .....+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccc
Confidence 46899999999999999999999999998876 4788999999999888 45778999998 5554433211 112357
Q ss_pred EEEEEeCCCCEEEEEeC-CCeEEEEeCCCC----------------------CCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895 309 FSMTFDNSGSRLITTEA-DKTVKLYKEDDS----------------------ATEESHPVITGSHDCTIRLWDLAAGKSL 365 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~----------------------~~~~~~~l~sgs~d~~v~iwd~~~~~~~ 365 (479)
..+.+.++++.+++.+. ++.+..++.+.. ...+...+++.+.++.|..||.+ ++.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 78888999999988877 666655543211 01234678888899999999998 9999
Q ss_pred EEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------cceEEEEEEcCCC-EEEEEeCCC---
Q psy8895 366 CTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------NAIINSICVNNEG-VLVSGADNG--- 434 (479)
Q Consensus 366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------~~~v~~l~~~~~~-~l~sg~~dg--- 434 (479)
.++..+ ....++...+++.+++++..+ .+..+|..+|+.+.++..+ -..+..+...+++ ++++. .+|
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~-~~g~~~ 236 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN-WQGHDR 236 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE-ECTTCT
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe-ccCccc
Confidence 988754 345677888999888887766 5999999999998776432 2347788888888 44444 222
Q ss_pred ------cEEEEec-CCCeEE
Q psy8895 435 ------TMCFWDW-RTGYNF 447 (479)
Q Consensus 435 ------~i~lWd~-~~~~~~ 447 (479)
..+++++ .+|+.+
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEE
T ss_pred cccccCCceEEEECCCCCEE
Confidence 3356666 456553
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=3.3e-09 Score=98.15 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=143.4
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE-EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLK-LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
+.+++++++|.+.++...++.|..||.. ++.. ..+......+..+++++++..+++...++.|..||. .++.....
T Consensus 59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~- 135 (299)
T 2z2n_A 59 VMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE- 135 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred eeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec-
Confidence 4567788888888877778889999976 4332 222234457899999999988877777889999998 33322111
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGK 363 (479)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~ 363 (479)
.......+..+.+++++...++....+.+..++...... .+....++...++.|..||. +++
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 111234678899999988777776677888877621100 11233444445788999998 555
Q ss_pred eEE-EEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEee-ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895 364 SLC-TLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440 (479)
Q Consensus 364 ~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd 440 (479)
... .+..+...+.++++++++.++++... +.+..|+. +++.... +..+...+.++++ +++.|..+...+.+..+|
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 332 23334567899999999998888744 56999998 5554322 4455667889999 888554444456777777
Q ss_pred cCCC
Q psy8895 441 WRTG 444 (479)
Q Consensus 441 ~~~~ 444 (479)
.+++
T Consensus 293 ~~~~ 296 (299)
T 2z2n_A 293 LIKD 296 (299)
T ss_dssp EC--
T ss_pred cCcc
Confidence 7654
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.41 E-value=3.2e-11 Score=114.65 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=142.6
Q ss_pred ccEEEEEEcCCCcEEEEEeCC---C--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC------------
Q psy8895 220 GWVRCVAVEPGNEWFATGSAD---K--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD------------ 282 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d---~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------------ 282 (479)
..+.+++|+|||++|+..+.+ + .|.+||+.+++.......+ . +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457789999999999887754 3 4778888888765544433 3 8999999999988877632
Q ss_pred ---------------CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-------eEEEEeCCCCC--
Q psy8895 283 ---------------RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK-------TVKLYKEDDSA-- 338 (479)
Q Consensus 283 ---------------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~~~~~~~~-- 338 (479)
..|.+||+.+++....... . .+..+.|+|++ .++++..+. ...+|..+...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE
Confidence 5788999977654111111 1 56688999999 777775542 33444332111
Q ss_pred -----------CCCCCeEEEEeCC--------CcEEEEECCCCeeEEEEccCCCceEE-EEEeCCCcEEEEEcCC-cEEE
Q psy8895 339 -----------TEESHPVITGSHD--------CTIRLWDLAAGKSLCTLTNHKKSVRS-VALHPTLYMFASASPD-NIKQ 397 (479)
Q Consensus 339 -----------~~~~~~l~sgs~d--------~~v~iwd~~~~~~~~~~~~h~~~v~~-i~~~~~~~~l~s~s~d-~i~~ 397 (479)
.+++..++.++.+ ..|.+|| +++.......|...+.. +.|+ ++ ++++++.+ .+.+
T Consensus 212 ~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 212 KMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred EeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 1234556665543 3677788 45544334456778886 8999 88 77766655 5888
Q ss_pred EeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcE-EEEecCCCe
Q psy8895 398 WKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTM-CFWDWRTGY 445 (479)
Q Consensus 398 w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i-~lWd~~~~~ 445 (479)
| +.+++... +..+...|.++++++ .++++++.++.. +||.+. |.
T Consensus 288 ~-~~~g~~~~-~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 288 Y-IWDGEIKP-IAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp E-EESSSEEE-EECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES-SS
T ss_pred E-EcCCceEE-EecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC-Cc
Confidence 8 76666544 334577899999999 877777777775 888876 53
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.39 E-value=2.4e-12 Score=124.72 Aligned_cols=218 Identities=10% Similarity=-0.033 Sum_probs=138.6
Q ss_pred cEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 221 WVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
.+.+++|+|||++|+..+.. ..|.+||+.+++......++......+.|+||++.|+.++.++.|++||+..++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36678899999998877543 468888998887654333332222336899999999999999999999987654321
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEE-----eCCCcEEEEECCCCeeEEEEccCC
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG-----SHDCTIRLWDLAAGKSLCTLTNHK 372 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sg-----s~d~~v~iwd~~~~~~~~~~~~h~ 372 (479)
... .+.. +.++++.++....+....+|.......++...++.. ..+..|++||+.+++..... .+.
T Consensus 117 ~~~--~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~ 187 (396)
T 3c5m_A 117 IYT--VDEE------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT 187 (396)
T ss_dssp EEE--CCTT------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred EEe--cccc------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence 110 0111 344555555554444444444322222333333322 35668999999987765444 456
Q ss_pred CceEEEEEeC-CCcEEEEEcC-------CcEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCC-----CcEE
Q psy8895 373 KSVRSVALHP-TLYMFASASP-------DNIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADN-----GTMC 437 (479)
Q Consensus 373 ~~v~~i~~~~-~~~~l~s~s~-------d~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~d-----g~i~ 437 (479)
..+..+.|+| ++..++..+. ..+.+|+...++........ ...+..+.|+|++ .|+.++.+ +.|.
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 7789999999 7775554433 24778888665533322322 3468889999998 66666543 4499
Q ss_pred EEecCCCeEE
Q psy8895 438 FWDWRTGYNF 447 (479)
Q Consensus 438 lWd~~~~~~~ 447 (479)
+||+.+++..
T Consensus 268 ~~d~~~g~~~ 277 (396)
T 3c5m_A 268 KANPETLENE 277 (396)
T ss_dssp EECTTTCCEE
T ss_pred EEECCCCCeE
Confidence 9999988653
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.39 E-value=3.7e-10 Score=106.60 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=154.5
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 301 (479)
...+.+. +++++++...++.|.+||..+++.+.++.. ......++++++++..++...++.|.+||+++.+.......
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 4556664 466667777789999999999999888853 35678999988885545544889999999987654321100
Q ss_pred CC---CCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCC----------------CCCCeEEEEeCC---------
Q psy8895 302 MD---SESGIFSMTFDNSGSRLITTE--ADKTVKLYKEDDSAT----------------EESHPVITGSHD--------- 351 (479)
Q Consensus 302 ~~---~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d--------- 351 (479)
.. .......+++ ++..+.++. .++.|.++|...... .+...++++..+
T Consensus 124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 00 0012334555 344555554 478999998764321 123344444444
Q ss_pred -CcEEEEECCCCeeEEEEccC-CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEee--ecCCcceEEEEEEcC-CC-
Q psy8895 352 -CTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQN--LPGHNAIINSICVNN-EG- 425 (479)
Q Consensus 352 -~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~--~~~h~~~v~~l~~~~-~~- 425 (479)
+.|.++|..+++...++.-. ......++++|++..+..+.. .+.+||..+++.... +..+......++++| ++
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE 280 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe
Confidence 78999999999887776532 236789999998776665554 889999988876421 222245688999998 55
Q ss_pred EEEEE----eCCCcEEEEecCCCeEEEEEEEeE
Q psy8895 426 VLVSG----ADNGTMCFWDWRTGYNFQRLQVRC 454 (479)
Q Consensus 426 ~l~sg----~~dg~i~lWd~~~~~~~~~~~~~~ 454 (479)
.+++. ..+++|.+||.. |+.++++++..
T Consensus 281 lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~ 312 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI 312 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred EEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence 55666 678999999998 88888877654
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=1.4e-11 Score=128.76 Aligned_cols=177 Identities=15% Similarity=0.017 Sum_probs=113.2
Q ss_pred EEEcCCCcEEEEEeCCCe-------------EEEEECCCCc----eEEEEecCCcCEEEEEEcCCCCEEEEEECCC----
Q psy8895 225 VAVEPGNEWFATGSADKI-------------IKVWDLATGK----LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR---- 283 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~-------------i~iWd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---- 283 (479)
++|+|||+.|+.++.|.. |++|++.++. .+.....|...+..+.|+|||++++..+.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 467888888888888766 9999998876 2223334556788999999999988776555
Q ss_pred cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCC--------C------------
Q psy8895 284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE---ADKTVKLYKEDDSAT--------E------------ 340 (479)
Q Consensus 284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~--------~------------ 340 (479)
.|.+||....+..... ..........+ +++..++.+. .++.|.+|+...... .
T Consensus 253 ~l~~~~~~~~~~~~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 253 DVYWKRPGEKDFRLLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEECTTCSSCEEEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred EEEEEcCCCCceEEee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 6666665433221111 12223444445 4555444443 246788888754321 0
Q ss_pred CCCeEEEEeCCCcEEEEECC-CCeeEEEEccC-CCceEEEEEeCCCcEEE-EE-cCC---cEEEEeCCCCeE
Q psy8895 341 ESHPVITGSHDCTIRLWDLA-AGKSLCTLTNH-KKSVRSVALHPTLYMFA-SA-SPD---NIKQWKCPEGKF 405 (479)
Q Consensus 341 ~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h-~~~v~~i~~~~~~~~l~-s~-s~d---~i~~w~~~~~~~ 405 (479)
...++++...|+..++|.+. .++....+..+ ...+..++++|++..++ +. +.. .+..||..+++.
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 12356788889988888665 35556666555 56788888999876544 22 222 488999988764
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.37 E-value=3.8e-10 Score=104.76 Aligned_cols=178 Identities=10% Similarity=0.087 Sum_probs=121.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEEEEC----------------
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFSCGD---------------- 281 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~~~---------------- 281 (479)
+.+++++++|+++++...++.|.+||..+++........ ...+..++++|+|+++++.+.
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~ 150 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL 150 (296)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence 467888899998888877889999999888765433221 124567999999998887321
Q ss_pred -CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CCC--------------------
Q psy8895 282 -DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD-SAT-------------------- 339 (479)
Q Consensus 282 -d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~-------------------- 339 (479)
.+.|..+|.. ++.... .........++|+|+++.+++.+.++.|.+|+... ...
T Consensus 151 ~~~~l~~~~~~-g~~~~~---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d 226 (296)
T 3e5z_A 151 PGRWVFRLAPD-GTLSAP---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD 226 (296)
T ss_dssp SSCEEEEECTT-SCEEEE---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred CCcEEEEECCC-CCEEEe---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence 2355555543 221111 12234567899999999887777788999998641 111
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeEEe
Q psy8895 340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL-HPTLYMFASASPDNIKQWKCPEGKFIQ 407 (479)
Q Consensus 340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~~~ 407 (479)
.+.. +..+. ++.|.+||.. ++.+..+..+.. +++++| +|++..|..++.+.+..++..+.++.+
T Consensus 227 ~~G~-l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 227 AGGL-IWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp TTSC-EEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred CCCC-EEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence 1122 34444 8899999986 777778877777 899999 588887777777777777776665543
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.31 E-value=4.8e-10 Score=117.51 Aligned_cols=161 Identities=13% Similarity=0.008 Sum_probs=103.8
Q ss_pred CCccEEEEEEcCCCcEEEEEeC-----CCeEEEEECCC------Cc-eEEEEecCCcCEEEEEEcCCCCEEEEEECC---
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSA-----DKIIKVWDLAT------GK-LKLSLTGHVGSVRGLTVSPRHPYLFSCGDD--- 282 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~-----d~~i~iWd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--- 282 (479)
|...+..+.|+|||++|+.++. +..|.+||+.+ +. ....+..+...+.. .|++++..++..+.+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 5556788999999999887765 56899999986 53 34566666666554 488888887765543
Q ss_pred -CcEEEEECCCCCc--ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC--cEEEE
Q psy8895 283 -RTVKCWDLEYNKA--PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC--TIRLW 357 (479)
Q Consensus 283 -~~i~~wd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~--~v~iw 357 (479)
..|.+||+.+... ............+..+.+.+++..+ ++...|+ .|.+|
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv-------------------------~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV-------------------------LCYLHDVKNTLQLH 364 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE-------------------------EEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE-------------------------EEEEECCEEEEEEE
Confidence 3699999876531 0111000111234455555433333 4444454 35567
Q ss_pred ECCCCeeEEEEccCCCceEEEEEeCCCcEEE-EE-cC---CcEEEEeCCCCe
Q psy8895 358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFA-SA-SP---DNIKQWKCPEGK 404 (479)
Q Consensus 358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~-s~---d~i~~w~~~~~~ 404 (479)
|+.+++.+..+..+...+..++++|++..++ +. +. ..+..||..+++
T Consensus 365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7767777778877778899999999875443 32 32 248899998776
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.30 E-value=9.5e-09 Score=94.96 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=156.5
Q ss_pred ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
+..+...+.+++++++|++.++...++.|.+||.. ++... ....+...+.++++++++..+++...++.|..||....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 33455678999999999988877778899999988 65433 22234567899999999988877766888999997522
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEE
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRL 356 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~i 356 (479)
...... ......+..+.+++++...++...++.+..++...... .+....++...++.|..
T Consensus 89 ~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 IKEYTL--PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp EEEEEC--SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEeC--CCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 111111 11334688899999888877777778888887632100 12233444555688999
Q ss_pred EECCCCeeEEE-EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895 357 WDLAAGKSLCT-LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSGAD 432 (479)
Q Consensus 357 wd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg~~ 432 (479)
||. +++.... +..+...+..+++++++.++++...+ .+..|+. +++.... +..+...+.++++++++ .+++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 998 5554332 33344568899999999988887644 6999998 6665432 34455678899999988 4555557
Q ss_pred CCcEEEEecCCCe
Q psy8895 433 NGTMCFWDWRTGY 445 (479)
Q Consensus 433 dg~i~lWd~~~~~ 445 (479)
++.|..||. ++.
T Consensus 245 ~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 245 ANKIGRLTS-NNI 256 (299)
T ss_dssp TTEEEEEET-TTE
T ss_pred CceEEEECC-CCc
Confidence 789999998 453
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=2.4e-10 Score=120.34 Aligned_cols=225 Identities=15% Similarity=0.050 Sum_probs=145.5
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-------
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSAD-----KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT------- 284 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d-----~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~------- 284 (479)
+|...+..++|+|||++|+.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344568889999999998877654 4699999999987543 111112257889999 88888776654
Q ss_pred -------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCC--C-C--------
Q psy8895 285 -------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDDS--A-T-------- 339 (479)
Q Consensus 285 -------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~--~-~-------- 339 (479)
|++|++.+.... ...........+..+.|+|+|++++..+.++ .+.+++.... . .
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 889998765421 1111112223578899999999888776543 7888886443 2 1
Q ss_pred -------CCCCeEEEEeC----CCcEEEEECCCC--eeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEE--EEeCCCC
Q psy8895 340 -------EESHPVITGSH----DCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIK--QWKCPEG 403 (479)
Q Consensus 340 -------~~~~~l~sgs~----d~~v~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~--~w~~~~~ 403 (479)
.++..++..+. ++.|.+||+.++ +....+..+...+..++++ ++.++++...+ ..+ +++. ++
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g 395 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-DG 395 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-TS
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CC
Confidence 12234555444 345999999874 3333344555667778887 55666666655 344 4454 45
Q ss_pred eEEeeecC-CcceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895 404 KFIQNLPG-HNAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY 445 (479)
Q Consensus 404 ~~~~~~~~-h~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~ 445 (479)
+....+.. +.+.+..+.+++++ .|+ +.+ ..++|.+||+.+|+
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55666654 36778888898876 444 322 35789999999886
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.29 E-value=2.7e-09 Score=99.61 Aligned_cols=225 Identities=11% Similarity=0.148 Sum_probs=151.0
Q ss_pred CCCccEEEEEEcCCCcEEEE-------EeCCCeEEEEECCCCceEEEEe----cCCcCEEEEEEcCC-CCEEEEEECCCc
Q psy8895 217 GHLGWVRCVAVEPGNEWFAT-------GSADKIIKVWDLATGKLKLSLT----GHVGSVRGLTVSPR-HPYLFSCGDDRT 284 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~s-------gs~d~~i~iWd~~~~~~~~~~~----~h~~~v~~v~~~~~-~~~l~s~~~d~~ 284 (479)
+......+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +.++++ +.++.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 33455678999999988888 6778899999988887643221 24467899999999 765554 44457
Q ss_pred EEEEECCCCCcccC-CCC--CCCCCCeEEEEEeCCCCEEEEEeCC---------------CeEEEEeCCCCC--------
Q psy8895 285 VKCWDLEYNKAPVQ-PGS--MDSESGIFSMTFDNSGSRLITTEAD---------------KTVKLYKEDDSA-------- 338 (479)
Q Consensus 285 i~~wd~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~~~~~~~~-------- 338 (479)
|.+||.+ ++.... ... ......+..+.+++++...++...+ +.+..++.....
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 172 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ 172 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCC
Confidence 8999987 443211 110 1112347789999999877776554 455555543110
Q ss_pred -------C----CCCCeE-EEEeCCCcEEEEECC-CCe-----eEEEEccCC-CceEEEEEeCCCcEEEEEcC-CcEEEE
Q psy8895 339 -------T----EESHPV-ITGSHDCTIRLWDLA-AGK-----SLCTLTNHK-KSVRSVALHPTLYMFASASP-DNIKQW 398 (479)
Q Consensus 339 -------~----~~~~~l-~sgs~d~~v~iwd~~-~~~-----~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~-d~i~~w 398 (479)
. .+...+ ++...++.|.+||+. .++ ....+..+. .....+++++++.++++... +.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 0 112233 344567889999976 343 223343443 56788999999998888754 469999
Q ss_pred eCCCCeEEeeecCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCC
Q psy8895 399 KCPEGKFIQNLPGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRT 443 (479)
Q Consensus 399 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~ 443 (479)
+..+++.+..+..+...+.++++++++ .| ++...++.|..|+...
T Consensus 253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 988777766666666788999999888 35 4555668899998764
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.28 E-value=5e-10 Score=106.36 Aligned_cols=207 Identities=11% Similarity=0.095 Sum_probs=136.2
Q ss_pred ccEEEEEEcCCCcEEEEEe---------CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---C--cE
Q psy8895 220 GWVRCVAVEPGNEWFATGS---------ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---R--TV 285 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs---------~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~--~i 285 (479)
..+...++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34566777 788776542 2567999999988754 33 467889999999999877653 3 47
Q ss_pred EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC---------------------------CeEEEEeCCCCC
Q psy8895 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD---------------------------KTVKLYKEDDSA 338 (479)
Q Consensus 286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~i~~~~~~~~~ 338 (479)
.+||+..++..... .... +..+.|+|+++.++.++.+ ..|.+|+.....
T Consensus 88 ~~~~~~~g~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 88 WVADLETLSSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEETTTTEEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEEECCCCceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 77788765432211 1122 7889999999988877632 457777765432
Q ss_pred C---------------CCCCeEEEEeCCC-------cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---
Q psy8895 339 T---------------EESHPVITGSHDC-------TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD--- 393 (479)
Q Consensus 339 ~---------------~~~~~l~sgs~d~-------~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--- 393 (479)
. +++ .+++++.+. ...+|.+.+++ ...+..+ ..+..+ +|++..++..+.+
T Consensus 164 ~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 164 VIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred EEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 2 123 555665542 34454444444 3444444 455554 8999877655422
Q ss_pred ------cEEEEeCCCCeEEeeecCCcceEEE-EEEcCCCEEEEEeCCCcEEEEecCCCeE
Q psy8895 394 ------NIKQWKCPEGKFIQNLPGHNAIINS-ICVNNEGVLVSGADNGTMCFWDWRTGYN 446 (479)
Q Consensus 394 ------~i~~w~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~sg~~dg~i~lWd~~~~~~ 446 (479)
.+.+|| +++......+|...+.. +.++ |+++++++.|+.++|| +.+|..
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSE
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCce
Confidence 377777 66665555667778886 8899 7788889999999999 886654
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.28 E-value=1.7e-09 Score=99.33 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=117.1
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcccCCC-
Q psy8895 224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYNKAPVQPG- 300 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~- 300 (479)
++.++|+|++++ +.++.|..||. +|+.+..+..+. ..+.++.+.++|.++++.+. ++.+..+|.+ ++......
T Consensus 41 ~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~ 116 (276)
T 3no2_A 41 SVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEF 116 (276)
T ss_dssp EEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEE
T ss_pred CeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEec
Confidence 456678898888 45778999998 899998888753 47889999999999998777 6777777753 33221110
Q ss_pred --C-CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------CCCCCeEEEEeCCCcEEEEECCCC
Q psy8895 301 --S-MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------TEESHPVITGSHDCTIRLWDLAAG 362 (479)
Q Consensus 301 --~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------~~~~~~l~sgs~d~~v~iwd~~~~ 362 (479)
. .........+...+++..+++...++.+..|+..... ......+++++.++.|..+|..++
T Consensus 117 ~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 117 ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp CCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred cCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 0 0011123345668899999999999999988875211 123456777777889999999999
Q ss_pred eeEEEEccCC------CceEEEEEeCCCcEEEEEcC
Q psy8895 363 KSLCTLTNHK------KSVRSVALHPTLYMFASASP 392 (479)
Q Consensus 363 ~~~~~~~~h~------~~v~~i~~~~~~~~l~s~s~ 392 (479)
+.+.++..+. ..+..+...+++.++++.++
T Consensus 197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred cEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence 9999886432 23678888889888887753
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.25 E-value=5.9e-10 Score=105.26 Aligned_cols=223 Identities=10% Similarity=0.098 Sum_probs=149.4
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
.|.+++|++++..+++.+.++.++.| .++....+..+...+.+++|++++.+++++..++.|.+||.++++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~- 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF- 82 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-
T ss_pred ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-
Confidence 45677888888877777888899999 44555667777778899999999998778888999999998765532211
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCC-------------------CCCCeEEEEeC------C
Q psy8895 301 SMDSESGIFSMTFDNSGSRLITTEAD----KTVKLYKEDDSAT-------------------EESHPVITGSH------D 351 (479)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~-------------------~~~~~l~sgs~------d 351 (479)
......+..+.+++++..+++...+ +.|..|+...... ++...+++... .
T Consensus 83 -~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 -VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp -ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred -eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 1234568899999999887777666 6888887654321 11223333332 2
Q ss_pred CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcC-CcEEEEeCCC-CeEEe--------eecCCcceEEEEE
Q psy8895 352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASP-DNIKQWKCPE-GKFIQ--------NLPGHNAIINSIC 420 (479)
Q Consensus 352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~-d~i~~w~~~~-~~~~~--------~~~~h~~~v~~l~ 420 (479)
+.|..+|..+++.. .+..+...+..++|+|++. ++++.+. +.|.+|+..+ +.... .+.++ ..+..++
T Consensus 162 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 162 GGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred ceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 45555665544432 2222334578999999987 4455543 4699999853 33221 12233 4678899
Q ss_pred EcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 421 VNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 421 ~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+++++ ++++...++.|.+||. ++..++.+.
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~ 270 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL 270 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence 99998 5666667899999998 466665553
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=8.8e-08 Score=88.42 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=153.4
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA 295 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 295 (479)
.......++++.++|++.++...++.|.+||.. ++... .+..+...+..+++++++.++++...++.|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 445678899999999988888788999999988 65443 223334678999999999887776667889999986 332
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEE
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWD 358 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd 358 (479)
.... .......+..+.+++++...++...++.+..++...... ......++...++.|..+|
T Consensus 95 ~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYP-LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEec-CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 2111 111235688899999888777776677787776542110 1223344444567888888
Q ss_pred CCCCeeEE-EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEe-eecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895 359 LAAGKSLC-TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQ-NLPGHNAIINSICVNNEG-VLVSGADNG 434 (479)
Q Consensus 359 ~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~l~sg~~dg 434 (479)
. +++... ....+...+..+++++++.++++...+ .+..++. +++... .+..+...+.++++++++ .+++...++
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 8 444332 222344568999999999988887655 5999998 555433 244455678899999988 555555678
Q ss_pred cEEEEecCCCe
Q psy8895 435 TMCFWDWRTGY 445 (479)
Q Consensus 435 ~i~lWd~~~~~ 445 (479)
.|..||. ++.
T Consensus 252 ~i~~~~~-~g~ 261 (300)
T 2qc5_A 252 QIGRITN-DNT 261 (300)
T ss_dssp EEEEECT-TSC
T ss_pred eEEEECC-CCc
Confidence 9999998 453
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=1.5e-07 Score=86.93 Aligned_cols=214 Identities=10% Similarity=0.048 Sum_probs=139.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
+.++++.++|++.++...++.|..+|.. ++... .+......+.++++++++.++++...++.|..+|.. ++.....
T Consensus 64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~- 140 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD- 140 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-
Confidence 4567777888877777667889999987 55432 222234578999999999888777667889999886 3322111
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGK 363 (479)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~ 363 (479)
.......+..+.+++++...++....+.|..++...... .+....++...++.|..+|. +++
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 111234678899999998666666677788777532100 12233344445567899988 444
Q ss_pred eEE-EEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEE-eeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895 364 SLC-TLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFI-QNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440 (479)
Q Consensus 364 ~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~-~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd 440 (479)
... .+..+...+.++++++++.++++... +.|..++. +++.. ..+......+.++++++++.|..+... .|..+|
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 332 23334567899999999998888765 46999998 45443 224434456788889988855545444 666665
Q ss_pred c
Q psy8895 441 W 441 (479)
Q Consensus 441 ~ 441 (479)
.
T Consensus 298 p 298 (300)
T 2qc5_A 298 L 298 (300)
T ss_dssp E
T ss_pred C
Confidence 4
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.20 E-value=4.5e-09 Score=95.83 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=121.2
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895 223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 301 (479)
.+++++++|+++++.. ++.|.+||....... .+. .....+..+++++++.++++...++.|.+||..........
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-- 145 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-- 145 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--
Confidence 3567788888666665 889999998765443 232 22356899999999988777777889999976543322111
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCee
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGKS 364 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~~ 364 (479)
......+..+++++++...++...++.|..|+...... .+....++...++.|.+||......
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 11223456788999998777777778899998654211 1223455555678999999876543
Q ss_pred EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe
Q psy8895 365 LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK 404 (479)
Q Consensus 365 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~ 404 (479)
......+...+.++++++++.++++...+ .|.+++....+
T Consensus 226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 33222333568999999999988887655 59999876544
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.18 E-value=7.8e-08 Score=92.13 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=141.0
Q ss_pred EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895 224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPRHPYLFSCGD--DRT 284 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d~~ 284 (479)
.++++|||++++.+. .++.|.++|..+.+.+..+.-- ...-..++++|||++|+.+.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 889999999988876 3678999999998877665422 122357899999999998764 578
Q ss_pred EEEEECCCCCcccC-CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC-----------------------
Q psy8895 285 VKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT----------------------- 339 (479)
Q Consensus 285 i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~----------------------- 339 (479)
|.++| ++.+.... . .... ++.+.+.+ ..+++.+.|+.+.+++. ....
T Consensus 150 v~viD-~t~~~~~~~i---~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLL---SSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred EEEEE-CCCCEEeEEc---CCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 99999 87765432 2 1111 12233333 34445556666666655 2111
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCe--eEEEEcc----------CCCceEEEEEeCCCcEEEE-Ec----------CCcEE
Q psy8895 340 EESHPVITGSHDCTIRLWDLAAGK--SLCTLTN----------HKKSVRSVALHPTLYMFAS-AS----------PDNIK 396 (479)
Q Consensus 340 ~~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~----------h~~~v~~i~~~~~~~~l~s-~s----------~d~i~ 396 (479)
.....++..+..+.+.+.|+.... .+..+.- .......++++|++..+.. .. .+.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 011222333356788888986542 2222211 1122445788998665444 32 13588
Q ss_pred EEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEE
Q psy8895 397 QWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 397 ~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~ 449 (479)
+.|..+++.+.+++... ....+.+++|+ .++++. .++.|.++|..+++.+++
T Consensus 302 VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 302 SVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999988885432 57889999998 466666 589999999999988766
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.15 E-value=1.9e-08 Score=101.53 Aligned_cols=195 Identities=14% Similarity=0.050 Sum_probs=138.0
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC--CCCcccCCCCCCCCC
Q psy8895 229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPGSMDSES 306 (479)
Q Consensus 229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~ 306 (479)
+.+.++++...++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+. +.+.... .....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~---i~~G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE---IKIGS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE---EECCS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE---EecCC
Confidence 455677888889999999999999988876433 56789999999999999999999999995 4433221 11223
Q ss_pred CeEEEEEe----CCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc----------C-
Q psy8895 307 GIFSMTFD----NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN----------H- 371 (479)
Q Consensus 307 ~i~~~~~~----~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~----------h- 371 (479)
....+.++ |++++++++. ..++++.++|..+.+++.++.- |
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n------------------------~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p 296 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGA------------------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 296 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE------------------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred CCceeEEccccCCCCCEEEEEE------------------------ccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence 45678888 5888775443 3456777888888777776542 2
Q ss_pred CCceEEEEEeCCCcEEEEEcC--CcEEEEeCCCCeEE--eeecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCCCe
Q psy8895 372 KKSVRSVALHPTLYMFASASP--DNIKQWKCPEGKFI--QNLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 372 ~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~~~ 445 (479)
...+..+..++++..++..-. +.|.+.|..+.+.+ ..+ ........+.|++++ + +++...+++|.++|.++++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 226788888888665544433 34888888665322 222 223346677899998 4 4555578899999999998
Q ss_pred EEEEEEE
Q psy8895 446 NFQRLQV 452 (479)
Q Consensus 446 ~~~~~~~ 452 (479)
.+..+.+
T Consensus 376 l~~~i~v 382 (567)
T 1qks_A 376 LVAIEDT 382 (567)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 8777766
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=1.4e-09 Score=103.70 Aligned_cols=170 Identities=12% Similarity=0.052 Sum_probs=118.4
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---------e-EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGK---------L-KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---------~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~ 290 (479)
.+..+++++...++++|+.++ +++|+++..+ . ......+.. |..++| |+.+|+.+ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 577899999999999999985 5569865332 1 111223556 999999 88898888 8899999998
Q ss_pred CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370 (479)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~ 370 (479)
......... ...+..+..+.+.+ ..+++++.||++.+||+..+....
T Consensus 114 ~sl~~~~~~--~~~~~~v~~i~~~~---------------------------p~~av~~~dG~L~v~dl~~~~~~~---- 160 (388)
T 1xip_A 114 EELSEFRTV--TSFEKPVFQLKNVN---------------------------NTLVILNSVNDLSALDLRTKSTKQ---- 160 (388)
T ss_dssp SSTTCEEEE--EECSSCEEEEEECS---------------------------SEEEEEETTSEEEEEETTTCCEEE----
T ss_pred hhhhccCcc--ceeecceeeEEecC---------------------------CCEEEEECCCCEEEEEccCCcccc----
Confidence 654321100 01112233222221 126778889999999998776543
Q ss_pred CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE--Eeee------c---CCcceEEEEEEcCCC-EEEE
Q psy8895 371 HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF--IQNL------P---GHNAIINSICVNNEG-VLVS 429 (479)
Q Consensus 371 h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~--~~~~------~---~h~~~v~~l~~~~~~-~l~s 429 (479)
+...|++++|||++ +.++..++.+.+|+...++. ..++ . +|...|.++++.+++ ++++
T Consensus 161 ~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34589999999999 55566666799998877775 5555 2 477899999999888 5554
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=9.2e-08 Score=92.92 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=145.6
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~ 297 (479)
.....++++++++++++...++.|++||..++............ . +++++++..|+.+..++ .|..+|........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 34678999999998888888899999999988776555443333 3 89999999888887765 78888875433211
Q ss_pred CC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------C--------C-CCCeEEEEeCC
Q psy8895 298 QP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------T--------E-ESHPVITGSHD 351 (479)
Q Consensus 298 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------~--------~-~~~~l~sgs~d 351 (479)
.. ........+..++++|++..+..+..++.|..|+..... . + ...++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 11 001123456678899965666667777888888864321 0 0 12233444556
Q ss_pred CcEEEEECCCCeeEEEEccCC---------------CceEEEEEeCCCcEEEEEc-CC-cEEEEeCCCCeEEeeecCC--
Q psy8895 352 CTIRLWDLAAGKSLCTLTNHK---------------KSVRSVALHPTLYMFASAS-PD-NIKQWKCPEGKFIQNLPGH-- 412 (479)
Q Consensus 352 ~~v~iwd~~~~~~~~~~~~h~---------------~~v~~i~~~~~~~~l~s~s-~d-~i~~w~~~~~~~~~~~~~h-- 412 (479)
+.|+.|+.... +..+.++. .....++++|++.++++.+ .+ .|+.|+..+++. .++.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 77777876543 33333322 3468899999999888877 55 499999877764 333333
Q ss_pred -------------cceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895 413 -------------NAIINSICVNNEG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 413 -------------~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~ 441 (479)
-.....+++++++ ++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2357889999988 6677777788887764
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.09 E-value=2.3e-08 Score=95.00 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=143.0
Q ss_pred EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecCC-------cCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895 224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGHV-------GSVRGLTVSPRHPYLFSCGD--DRT 284 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~~~--d~~ 284 (479)
.++++|||++++.++ .++.|.+||..+++.+..+.-.. ..-..++++|||++++.+.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999887665 36789999999999887764211 13456899999999887753 689
Q ss_pred EEEEECCCCCcccCCCCCCC-----CCCeEEEEEeCCCCEEEEEeCC-CeEE-----EEeCCCCCC-------CCCCeEE
Q psy8895 285 VKCWDLEYNKAPVQPGSMDS-----ESGIFSMTFDNSGSRLITTEAD-KTVK-----LYKEDDSAT-------EESHPVI 346 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d-~~i~-----~~~~~~~~~-------~~~~~l~ 346 (479)
|.++|+++.+.......... .+.-.-+...++|+.+.....+ +.+. +++...... .....++
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 99999988765432210000 0000012334555555544433 3331 111111000 0122345
Q ss_pred EEeCCCcEEEEECCCCe--eEEEEc---------c-CCCceEEEEEeCCCcEEEEEcC-----------CcEEEEeCCCC
Q psy8895 347 TGSHDCTIRLWDLAAGK--SLCTLT---------N-HKKSVRSVALHPTLYMFASASP-----------DNIKQWKCPEG 403 (479)
Q Consensus 347 sgs~d~~v~iwd~~~~~--~~~~~~---------~-h~~~v~~i~~~~~~~~l~s~s~-----------d~i~~w~~~~~ 403 (479)
-.+.+++|.+.|+.... .+..+. + .......+++++++..+..... +.|.+.|..++
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~ 321 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 321 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence 56778999999997653 222221 0 1123445788888655544321 24889999999
Q ss_pred eEEeeecCCcceEEEEEEcCCC--EEEE-EeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 404 KFIQNLPGHNAIINSICVNNEG--VLVS-GADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 404 ~~~~~~~~h~~~v~~l~~~~~~--~l~s-g~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
+.+.++.-- ..++.+.+++|+ +|++ ...++.|.++|..+++.++++++.
T Consensus 322 kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 322 ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 998877532 267889999997 4555 455899999999999888776554
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=1.4e-07 Score=87.39 Aligned_cols=214 Identities=13% Similarity=0.122 Sum_probs=142.7
Q ss_pred ecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895 215 ISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 215 ~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~ 293 (479)
+..+...-.+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3344556678899985 556777778899999999887653 332 4567999999999996554 3 568999998765
Q ss_pred CcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCC---------CeEEEEeCCCCC-----------------CCCCCeE
Q psy8895 294 KAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEAD---------KTVKLYKEDDSA-----------------TEESHPV 345 (479)
Q Consensus 294 ~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~~~~~~~~-----------------~~~~~~l 345 (479)
+.... .........+..+.+++++...++.... ....+|..+... .++...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 43211 1111123457889999999866654321 233455443211 1223334
Q ss_pred -EEEeCCCcEEEEEC--CCCee-----EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceE
Q psy8895 346 -ITGSHDCTIRLWDL--AAGKS-----LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAII 416 (479)
Q Consensus 346 -~sgs~d~~v~iwd~--~~~~~-----~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v 416 (479)
++.+.++.|..||+ .++.. +..+..+......+++++++.++++...+ .|..||..+++.+..+..+...+
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence 55566788999987 34432 22333344567899999999988887655 59999999899988888877789
Q ss_pred EEEEEc-CCC-EE-EEEeC
Q psy8895 417 NSICVN-NEG-VL-VSGAD 432 (479)
Q Consensus 417 ~~l~~~-~~~-~l-~sg~~ 432 (479)
++++|. |++ .| ++...
T Consensus 244 t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEESGGGCEEEEEEBC
T ss_pred eEEEEeCCCCCEEEEEcCC
Confidence 999998 665 44 44443
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=1e-08 Score=107.00 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=142.3
Q ss_pred CCCccEEEEEEcCCCcEEEE-----EeCCCeEEEEECCCCceEEE-EecCCcCEEEEEEcCCCCEEEEEECCC-------
Q psy8895 217 GHLGWVRCVAVEPGNEWFAT-----GSADKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRHPYLFSCGDDR------- 283 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~s-----gs~d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~------- 283 (479)
+|...+..++|+|||++||- |+....|++||+.+++.+.. +... ....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence 45667888999999998873 33345799999999986543 2211 12467899 999998887774
Q ss_pred ------cEEEEECCCCCccc--CCCCCC-CCCCeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCC-----------
Q psy8895 284 ------TVKCWDLEYNKAPV--QPGSMD-SESGIFSMTFDNSGSRLITTEA----DKTVKLYKEDDSAT----------- 339 (479)
Q Consensus 284 ------~i~~wd~~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~----------- 339 (479)
.|++|++.+..... ...... +......+.++|++++++.... ...+.+++......
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 49999987654311 111111 2334678899999998865443 24788888654310
Q ss_pred ------C-CCCeEEEEeCC---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEc-CC---cEEEEeCCCC
Q psy8895 340 ------E-ESHPVITGSHD---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASAS-PD---NIKQWKCPEG 403 (479)
Q Consensus 340 ------~-~~~~l~sgs~d---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d---~i~~w~~~~~ 403 (479)
. ....++....| +.|..+|+.++.. ...+..|...+. .|++++..|+... .+ .+.+|+...+
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 0 11234444444 5788999987654 345555655554 8888877665544 33 3888998754
Q ss_pred eEEeeec-CCcceEEEEEEcCCC-EEEEEeCC----CcEEEEecCCCe
Q psy8895 404 KFIQNLP-GHNAIINSICVNNEG-VLVSGADN----GTMCFWDWRTGY 445 (479)
Q Consensus 404 ~~~~~~~-~h~~~v~~l~~~~~~-~l~sg~~d----g~i~lWd~~~~~ 445 (479)
. ...+. .+.+.+..+.+++++ .++....+ +++..||+.+++
T Consensus 361 ~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 34443 344567777777776 44433333 789999998875
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.04 E-value=9.3e-09 Score=108.21 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=100.5
Q ss_pred CeEEEEECCCCce--EEEEec--CCcCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCC--C-cccCCCCCCCCCCe
Q psy8895 241 KIIKVWDLATGKL--KLSLTG--HVGSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYN--K-APVQPGSMDSESGI 308 (479)
Q Consensus 241 ~~i~iWd~~~~~~--~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~--~-~~~~~~~~~~~~~i 308 (479)
..|.+|++.++.. ...+.. +...+..+.|+|||++|+..+.+ ..|.+||+.++ + ..... ......
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~ 319 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQ 319 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSC
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCce
Confidence 4588899877652 223333 33358899999999988877644 38999998765 2 21111 112223
Q ss_pred EEEEEeCCCCEEEEEeCC----CeEEEEeCCCCC-C-----------------CCCCeEEEEeCCCcEEEEECC-CCeeE
Q psy8895 309 FSMTFDNSGSRLITTEAD----KTVKLYKEDDSA-T-----------------EESHPVITGSHDCTIRLWDLA-AGKSL 365 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~-~-----------------~~~~~l~sgs~d~~v~iwd~~-~~~~~ 365 (479)
... +++++..++..+.+ ..|.+|+..... . .....+++...|+..+||.+. .++..
T Consensus 320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCce
Confidence 333 34778887777654 347788765421 0 012356778888887777554 35556
Q ss_pred EEEcc-CCCceEEEEEeCCCcEEE-EE-cCC---cEEEEeCCCCeE
Q psy8895 366 CTLTN-HKKSVRSVALHPTLYMFA-SA-SPD---NIKQWKCPEGKF 405 (479)
Q Consensus 366 ~~~~~-h~~~v~~i~~~~~~~~l~-s~-s~d---~i~~w~~~~~~~ 405 (479)
..+.. +...+..++++|++..++ +. +.. .+..||..+++.
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66654 356788999999875333 32 222 488999988774
No 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.00 E-value=8.1e-08 Score=90.47 Aligned_cols=200 Identities=9% Similarity=-0.007 Sum_probs=141.0
Q ss_pred CCCeEEEEECCCCceEEEEe------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEE
Q psy8895 239 ADKIIKVWDLATGKLKLSLT------GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMT 312 (479)
Q Consensus 239 ~d~~i~iWd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~ 312 (479)
.+++|.++|..+++....+. ........+++.. ++.+++...++.|.+||.++.+..... ........++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i---~~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRI---TGFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEE---ECCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEc---CCCCCCcEEE
Confidence 37899999999987654331 1123467788754 445556667899999999877654322 1234577889
Q ss_pred EeCCCCEEEEEe-CCCeEEEEeCCCCCC---------------C-----CCCeEEEEe--CCCcEEEEECCCCeeEEEEc
Q psy8895 313 FDNSGSRLITTE-ADKTVKLYKEDDSAT---------------E-----ESHPVITGS--HDCTIRLWDLAAGKSLCTLT 369 (479)
Q Consensus 313 ~~~~~~~l~~~~-~d~~i~~~~~~~~~~---------------~-----~~~~l~sgs--~d~~v~iwd~~~~~~~~~~~ 369 (479)
+++++ .+.++. .++.|.++|...... + ....++.+. .+++|.++|..+++.+.++.
T Consensus 91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 98887 455554 889999998764321 0 122344554 48899999999999888876
Q ss_pred cCCCceEEEEEeCCCcEEEEEcCC-----------cEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCCCcE
Q psy8895 370 NHKKSVRSVALHPTLYMFASASPD-----------NIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADNGTM 436 (479)
Q Consensus 370 ~h~~~v~~i~~~~~~~~l~s~s~d-----------~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~dg~i 436 (479)
.. .....+.++|++.+++++..+ .+.++|..+++....+.-. ......++++|++ .|..+.. .|
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence 43 345788999999988887653 5999999999887766532 2367889999976 6665543 99
Q ss_pred EEEecCCCeE
Q psy8895 437 CFWDWRTGYN 446 (479)
Q Consensus 437 ~lWd~~~~~~ 446 (479)
.+||..+++.
T Consensus 247 ~~~d~~t~~~ 256 (328)
T 3dsm_A 247 WRMPVEADRV 256 (328)
T ss_dssp EEEETTCSSC
T ss_pred EEEECCCCce
Confidence 9999988764
No 208
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=1.6e-10 Score=111.04 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=102.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895 230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF 309 (479)
Q Consensus 230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~ 309 (479)
++..+++++.|+.|..||..+|+.++.+.. +.+.+..+..++..+++++.|+.|+.||.++++....... .....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~~~~~- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF-TIPELV- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC-CHHHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec-cCcccc-
Confidence 577899999999999999999999988876 4555555666777777778999999999976654321100 000000
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEE
Q psy8895 310 SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFAS 389 (479)
Q Consensus 310 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 389 (479)
...| .......+++|+.|+.++.||.++++.+.++..+. ...++|++..+..
T Consensus 84 --~~sp----------------------~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~ 135 (369)
T 2hz6_A 84 --QASP----------------------CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYL 135 (369)
T ss_dssp --TTCS----------------------CC-----CCCCEEEEEEEEECCC--------------------------EEE
T ss_pred --ccCc----------------------eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEE
Confidence 0000 00011235567778899999999999888776543 1344566555555
Q ss_pred EcC-CcEEEEeCCCCeEEeeecCCcceEEEEEEcCC----CEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 390 ASP-DNIKQWKCPEGKFIQNLPGHNAIINSICVNNE----GVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 390 ~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
++. +.+..||..+|+.+.....+. ....++.++ +.++.++.||.+..||.++|+.+-+.+
T Consensus 136 ~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 136 GRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 554 469999999988755443211 122233332 667788999999999999998765443
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.90 E-value=7.5e-08 Score=93.09 Aligned_cols=225 Identities=16% Similarity=0.108 Sum_probs=142.9
Q ss_pred EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895 224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPRHPYLFSCGD--DRT 284 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d~~ 284 (479)
.+.++|||++++.+. .++.|.++|..+++.+..+.-- ...-..+.++||+++++.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999887765 4678999999999888776421 122356799999999988764 578
Q ss_pred EEEEECCCCCcccCCCCCCCC------CCeEEEEEeCCCCEEEEEeCCCeEE-----EEeCCCCC-------CCCCCeEE
Q psy8895 285 VKCWDLEYNKAPVQPGSMDSE------SGIFSMTFDNSGSRLITTEADKTVK-----LYKEDDSA-------TEESHPVI 346 (479)
Q Consensus 285 i~~wd~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~-----~~~~~~~~-------~~~~~~l~ 346 (479)
|.+.|+.+.+...... .... +.-..+.+.++++.+++...++++. +++..... ......++
T Consensus 202 VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp EEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE
T ss_pred EEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE
Confidence 9999998766432211 1000 0011234455555555544444332 12211110 12234455
Q ss_pred EEeCCCcEEEEECCCCeeE--EEEcc----------CCCceEEEEEeCCCc-EEEEEc----------CCcEEEEeCCCC
Q psy8895 347 TGSHDCTIRLWDLAAGKSL--CTLTN----------HKKSVRSVALHPTLY-MFASAS----------PDNIKQWKCPEG 403 (479)
Q Consensus 347 sgs~d~~v~iwd~~~~~~~--~~~~~----------h~~~v~~i~~~~~~~-~l~s~s----------~d~i~~w~~~~~ 403 (479)
..+..+++.+.|+...... .++.- .......++++|++. ++++.. .+.|.+.|..+.
T Consensus 281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~ 360 (426)
T 3c75_H 281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG 360 (426)
T ss_dssp EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence 5567788999998654321 11110 011122368999865 444432 235999999999
Q ss_pred eEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEEE
Q psy8895 404 KFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 404 ~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~~ 450 (479)
+.+.+++... ..+.+.+++|+ .+++.. .++.|.++|..+++.++++
T Consensus 361 kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 361 ERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9998876422 47788999987 566666 5999999999999888765
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.89 E-value=5e-07 Score=84.01 Aligned_cols=176 Identities=8% Similarity=0.110 Sum_probs=114.3
Q ss_pred cEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEE-Eec----CCcCEEEEEEcCCCCEEEEEECC------------
Q psy8895 221 WVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLS-LTG----HVGSVRGLTVSPRHPYLFSCGDD------------ 282 (479)
Q Consensus 221 ~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~-~~~----h~~~v~~v~~~~~~~~l~s~~~d------------ 282 (479)
.+.+++++++ |+++++.. .+.|.+||.. ++.... ... ....+.++++++++.++++...+
T Consensus 72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 3567788888 76555554 4478899988 665432 211 12357899999999887776554
Q ss_pred ---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEe----CCCCEEEEE-eCCCeEEEEeCC-CCC---------------
Q psy8895 283 ---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFD----NSGSRLITT-EADKTVKLYKED-DSA--------------- 338 (479)
Q Consensus 283 ---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~~~~~~-~~~--------------- 338 (479)
+.|..+|.. ++.... .........++++ ++++.+..+ ..++.|..|+.. ...
T Consensus 150 ~~~~~l~~~~~~-g~~~~~---~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp SSCEEEEEECTT-SCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CCCCeEEEECCC-CCEEEe---ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 456666654 222111 0111235678888 888765554 567888888753 110
Q ss_pred --------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCC
Q psy8895 339 --------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPE 402 (479)
Q Consensus 339 --------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~ 402 (479)
..+....++...++.|.+||..+++.+..+..+...+.+++++|++. ++++...+ .+..++...
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 01234455666788999999987777667766667899999999998 55555543 588888754
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.88 E-value=3.9e-08 Score=93.25 Aligned_cols=211 Identities=11% Similarity=0.079 Sum_probs=122.5
Q ss_pred ccEEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEe-------cCCcCEEEEEEcCCCCEEEEEEC-----CCcE
Q psy8895 220 GWVRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLT-------GHVGSVRGLTVSPRHPYLFSCGD-----DRTV 285 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~-----d~~i 285 (479)
.....++++++|+.+++... ++.++||.+.+++. ..+. +|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67889999999999988642 34366776655543 2221 24467899999999876655433 5789
Q ss_pred EEEECCCCCcccC--C--CCCCCCCCeEEEEEeCCCCEE-EEEe---CCCeEEEEeCCCCCCC-----------------
Q psy8895 286 KCWDLEYNKAPVQ--P--GSMDSESGIFSMTFDNSGSRL-ITTE---ADKTVKLYKEDDSATE----------------- 340 (479)
Q Consensus 286 ~~wd~~~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~l-~~~~---~d~~i~~~~~~~~~~~----------------- 340 (479)
.+||+.+++.... . ........+..+++++++..+ ++.. .++.|.+|+.......
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999987653211 1 001122345788888765444 4433 4567777776432110
Q ss_pred -CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCC-----Ce-----EEe--
Q psy8895 341 -ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE-----GK-----FIQ-- 407 (479)
Q Consensus 341 -~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~-----~~-----~~~-- 407 (479)
+...+.+.+.|++++.|. ..+..|+++|++..|..+....-++|.+.. +. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 000111222233222221 235789999999766555444323443321 10 000
Q ss_pred eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895 408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
...++.+....+++++++ ++++...++.|.+||.++|+
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 111233345568899888 77778888999999986675
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=3.3e-08 Score=93.97 Aligned_cols=231 Identities=9% Similarity=-0.019 Sum_probs=142.3
Q ss_pred eeEEEecCCCccEEEEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCC
Q psy8895 210 KLYRVISGHLGWVRCVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPR 272 (479)
Q Consensus 210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~ 272 (479)
+....+..-..+ .+.++|||++++.+. .++.|.+||+.+++.+.++... ...-..++++||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 334444322334 699999999888776 3689999999999998887533 022457899999
Q ss_pred CCEEEEEEC--CCcEEE--EECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCC-----CC----
Q psy8895 273 HPYLFSCGD--DRTVKC--WDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDD-----SA---- 338 (479)
Q Consensus 273 ~~~l~s~~~--d~~i~~--wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~-----~~---- 338 (479)
|++++.+.. +..+.+ +|+.+ ...... . .. ....|++ ..+++.+.|+.+...+... ..
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~v---~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKS---A--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE-EEEEEC---S--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred CCEEEEEccCCCCeEEEEEEchhh-ceEEEC---C--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 999988764 467888 88865 111110 0 00 0011222 2333344455554444433 00
Q ss_pred -------------CCCCCeEEEEeCCCcEEEEECCCCe--eEEEEccC----------CCceEEEEEeCCCcEEE-EEc-
Q psy8895 339 -------------TEESHPVITGSHDCTIRLWDLAAGK--SLCTLTNH----------KKSVRSVALHPTLYMFA-SAS- 391 (479)
Q Consensus 339 -------------~~~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~h----------~~~v~~i~~~~~~~~l~-s~s- 391 (479)
......++..+. +++.+.|..... .+..+.-. ......++++|++..+. +..
T Consensus 206 ~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 206 CTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp SCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111223344444 788888886432 22222110 01112268999876444 433
Q ss_pred C--------CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEEEEEe
Q psy8895 392 P--------DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 392 ~--------d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
. +.+.++|..+++.+.+++... ....+++++|+ .+++.. .+++|.++|..+++.++++++.
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 2 356799999999988876544 57889999998 466666 5999999999999888776544
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.87 E-value=2.9e-06 Score=79.63 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=135.5
Q ss_pred ccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895 220 GWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ 298 (479)
Q Consensus 220 ~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 298 (479)
....+..|+|+ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++. .+ .|.+||.++++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34577889997 456677777899999999887653 232 34579999999999877654 43 499999876553211
Q ss_pred CCC--CCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCC---------------CCCCCeE-EEEeCCCcE
Q psy8895 299 PGS--MDSESGIFSMTFDNSGSRLITTEA------DKTVKLYKEDDSA---------------TEESHPV-ITGSHDCTI 354 (479)
Q Consensus 299 ~~~--~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~---------------~~~~~~l-~sgs~d~~v 354 (479)
... ......+..+.+++++...++... .+.|..++ .... ..+...+ ++.+.++.|
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 110 011235788999999987665542 13344444 1100 1223334 445567889
Q ss_pred EEEECC--CC-e-----eEEEEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCCcceEEEEEEc-CC
Q psy8895 355 RLWDLA--AG-K-----SLCTLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGHNAIINSICVN-NE 424 (479)
Q Consensus 355 ~iwd~~--~~-~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-~~ 424 (479)
.+||+. ++ + .+..+.........+++++++.++++... +.|..|+. +++.+..+..+...+.+++|+ ++
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence 999986 45 2 22333334456788999999998887754 46999998 677777777676779999998 77
Q ss_pred C-EE-EEEeCC
Q psy8895 425 G-VL-VSGADN 433 (479)
Q Consensus 425 ~-~l-~sg~~d 433 (479)
+ .| ++...+
T Consensus 283 ~~~L~vt~~~~ 293 (326)
T 2ghs_A 283 ASRLLVTSARE 293 (326)
T ss_dssp SCEEEEEEBCT
T ss_pred CCEEEEEecCC
Confidence 5 44 444444
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.85 E-value=4.7e-07 Score=84.22 Aligned_cols=217 Identities=11% Similarity=0.137 Sum_probs=138.5
Q ss_pred EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
.+..+........|+|+|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..||.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3444566778899999998 6777778899999998 454 34555566778999999999876655556789999875
Q ss_pred CCcccCCC--CCCCCCCeEEEEEeCCCCEEEE----EeC-------------CCeEEEEeCCCCC---------------
Q psy8895 293 NKAPVQPG--SMDSESGIFSMTFDNSGSRLIT----TEA-------------DKTVKLYKEDDSA--------------- 338 (479)
Q Consensus 293 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~--------------- 338 (479)
++...... .......+..+.+++++...++ +.. .+.|..++.....
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~ 195 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAF 195 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEE
Confidence 32211100 0011234567888999987775 221 2345555543221
Q ss_pred CCCCCeEEEEeCC------CcEEEEECCCCeeEE---EE-ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEee
Q psy8895 339 TEESHPVITGSHD------CTIRLWDLAAGKSLC---TL-TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQN 408 (479)
Q Consensus 339 ~~~~~~l~sgs~d------~~v~iwd~~~~~~~~---~~-~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~ 408 (479)
.++...++.+... +.|+.||+..+. +. .+ .........+++++++.++++. .+.|.+|+. +++.+..
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCEEEE
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCEEEE
Confidence 1233445555554 689999887654 21 11 1123345678999999977666 556999997 5777666
Q ss_pred ecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895 409 LPGHNAIINSICVNNEG-VLVSGADNGTMC 437 (479)
Q Consensus 409 ~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~ 437 (479)
+..+. .+..++|++++ .|..++.++..+
T Consensus 273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 273 IPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 65554 47788898877 666666664433
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.83 E-value=2.3e-06 Score=83.05 Aligned_cols=174 Identities=10% Similarity=0.115 Sum_probs=110.5
Q ss_pred EEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEE----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895 225 VAVEPGNEWFATGSADK--IIKVWDLATGKLKLSL----TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ 298 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 298 (479)
++++++++.|+.+..++ .|.+++...+.....+ ........+++++|+...|+.+..++.|+.||.........
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 56778888888887765 7888887766543333 21345678899999544555577788999999876543221
Q ss_pred --CCCCCCCCCe-E-EEEEeCC-CCEEEEEeCCCeEEEEeCCCCC------------------------------CCCCC
Q psy8895 299 --PGSMDSESGI-F-SMTFDNS-GSRLITTEADKTVKLYKEDDSA------------------------------TEESH 343 (479)
Q Consensus 299 --~~~~~~~~~i-~-~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~------------------------------~~~~~ 343 (479)
.........- . .++++|+ +..+++....+.|..|+.+... ..+..
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 0001111111 3 8999995 5555555667788888754310 01234
Q ss_pred eEEEEe-CCCcEEEEECCCCeeEEEEccC---------------CCceEEEEEeCCCcEEEEEcCCc-EEEEe
Q psy8895 344 PVITGS-HDCTIRLWDLAAGKSLCTLTNH---------------KKSVRSVALHPTLYMFASASPDN-IKQWK 399 (479)
Q Consensus 344 ~l~sgs-~d~~v~iwd~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~l~s~s~d~-i~~w~ 399 (479)
+.++-+ .++.|+.||+.+++ +.++.++ -.....+++++++.++++...+. |+.++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 455656 68899999987765 3444343 23578999999988888776653 65544
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.82 E-value=1.4e-07 Score=89.95 Aligned_cols=133 Identities=15% Similarity=0.060 Sum_probs=100.0
Q ss_pred CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
+.+ |..++| ++++|+.+ .++.|++||+.+.........|...+.++.+.+. .++.+..||.|.+||+.......
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence 556 999999 89999998 8899999999887766667778888888776654 38888999999999997654321
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEE------c
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTL------T 369 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~------~ 369 (479)
....+.+++|+|.| ++. |..||++++|+...++. .+++ .
T Consensus 161 ------~~~~Vs~v~WSpkG--~~v-------------------------g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~ 207 (388)
T 1xip_A 161 ------LAQNVTSFDVTNSQ--LAV-------------------------LLKDRSFQSFAWRNGEMEKQFEFSLPSELE 207 (388)
T ss_dssp ------EEESEEEEEECSSE--EEE-------------------------EETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred ------ccCCceEEEEcCCc--eEE-------------------------EEcCCcEEEEcCCCccccccceecCCcccc
Confidence 23468999999987 343 44555666665555543 4455 2
Q ss_pred ---cCCCceEEEEEeCCCcEEEE
Q psy8895 370 ---NHKKSVRSVALHPTLYMFAS 389 (479)
Q Consensus 370 ---~h~~~v~~i~~~~~~~~l~s 389 (479)
+|...|.+|.|.+++..+++
T Consensus 208 ~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 208 ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TSCTTTSEEEEEEESSSSEEEEE
T ss_pred cccCCCeeEEEEEEecCCeEEEE
Confidence 36788999999998887765
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.79 E-value=6.3e-07 Score=85.13 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=149.3
Q ss_pred cCCCcEEEEEeC-----CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEECCC
Q psy8895 228 EPGNEWFATGSA-----DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKCWDLEY 292 (479)
Q Consensus 228 ~~~g~~l~sgs~-----d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~wd~~~ 292 (479)
.|+++.++.... ++.|.+.|..+++.+..+..-..+ . ++++||+++++.+. .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 578888777665 679999999999998888755555 4 99999999887664 367899999987
Q ss_pred CCcccCCCCC-----CCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCC--------------CCCCeEEEEeCC
Q psy8895 293 NKAPVQPGSM-----DSESGIFSMTFDNSGSRLITTEA--DKTVKLYKEDDSAT--------------EESHPVITGSHD 351 (479)
Q Consensus 293 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~--------------~~~~~l~sgs~d 351 (479)
.+........ ........+.++|+++++.++.. ++.+.++|...... .....+++.+.|
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCC
Confidence 7643221000 00123456899999999998864 68899999876432 123456788899
Q ss_pred CcEEEEECCC-CeeEEEEccCC----Cce-EEEEEe-CCCcEEEEEcCCcEEEEeCCCCe--EEeeec---------C-C
Q psy8895 352 CTIRLWDLAA-GKSLCTLTNHK----KSV-RSVALH-PTLYMFASASPDNIKQWKCPEGK--FIQNLP---------G-H 412 (479)
Q Consensus 352 ~~v~iwd~~~-~~~~~~~~~h~----~~v-~~i~~~-~~~~~l~s~s~d~i~~w~~~~~~--~~~~~~---------~-h 412 (479)
|++.+.++.. ++...+...+. ..+ ...+|. ++++++..+..+.+.+.|..+.. ....+. + .
T Consensus 199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 9999999986 55433222121 122 123554 67876666666679999986553 333221 1 1
Q ss_pred cceEEEEEEcCCC-EEEEEeC----------CCcEEEEecCCCeEEEEEEEeE
Q psy8895 413 NAIINSICVNNEG-VLVSGAD----------NGTMCFWDWRTGYNFQRLQVRC 454 (479)
Q Consensus 413 ~~~v~~l~~~~~~-~l~sg~~----------dg~i~lWd~~~~~~~~~~~~~~ 454 (479)
.+....+++++++ .+..... ..+|-+.|.+|++.++++.+..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~ 331 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH 331 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence 1222346678776 5444321 2579999999999999887653
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.78 E-value=1.2e-05 Score=76.88 Aligned_cols=222 Identities=8% Similarity=-0.059 Sum_probs=138.8
Q ss_pred cCCCcEEEEEeC--CC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEECCC
Q psy8895 228 EPGNEWFATGSA--DK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKCWDLEY 292 (479)
Q Consensus 228 ~~~g~~l~sgs~--d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~wd~~~ 292 (479)
.|++++++.... .. +|.++|..+++.+..+..-..+ .++++||+++++.+. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 356766665543 22 8899999999988777654444 899999999988775 367899999976
Q ss_pred CCcccCCCCC-----CCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCC---------------CCCeEEEEeC
Q psy8895 293 NKAPVQPGSM-----DSESGIFSMTFDNSGSRLITTEA--DKTVKLYKEDDSATE---------------ESHPVITGSH 350 (479)
Q Consensus 293 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~~---------------~~~~l~sgs~ 350 (479)
.+........ ........+.++|++++++++.. ++.|.++| ...... ....+++.+.
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCA 185 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcC
Confidence 5443211000 00123457899999999998874 47899998 654311 0123456668
Q ss_pred CCcEEEEECCCCeeEEEEc-----cCCCc-eEEEEEeCCC-cEEEEEcCCcEEEEeCCCCe--EEeeecC----------
Q psy8895 351 DCTIRLWDLAAGKSLCTLT-----NHKKS-VRSVALHPTL-YMFASASPDNIKQWKCPEGK--FIQNLPG---------- 411 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~-----~h~~~-v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~--~~~~~~~---------- 411 (479)
|+++.++|. +++.+.... ....+ .....+.+++ .++.....+.+.+.|...+. .+..+.-
T Consensus 186 dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~ 264 (373)
T 2mad_H 186 QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence 999999999 777664321 11111 1223455543 33444444567778875442 2222211
Q ss_pred CcceEEEEEEcCCC-EEEEEeC----------CCcEEEEecCCCeEEEEEEEe
Q psy8895 412 HNAIINSICVNNEG-VLVSGAD----------NGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 412 h~~~v~~l~~~~~~-~l~sg~~----------dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.......+.+++++ .+..... ++.|.+.|..+++.++++.+.
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g 317 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG 317 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC
Confidence 11223446788887 5544332 357999999999998888654
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=2.7e-07 Score=95.63 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=141.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecC-C----cCEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCCcccCC
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGH-V----GSVRGLTVSPRHPYLFSCGD------DRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h-~----~~v~~v~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~ 299 (479)
+..++.++.|+.|..+|..+|+.+..+..+ . ..+.+.-...++ .++.++. ++.|+.+|.++++.....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888899999999999999999888765 2 112111111133 4444432 689999999887754221
Q ss_pred CCCCC------------------------------CCCeEEEEEeCCCCEEEEEeCCC-------------------eEE
Q psy8895 300 GSMDS------------------------------ESGIFSMTFDNSGSRLITTEADK-------------------TVK 330 (479)
Q Consensus 300 ~~~~~------------------------------~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~ 330 (479)
..... ......+++++.+..++.++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 11000 00112467788888887776553 355
Q ss_pred EEeCCCCCC--------C------------------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC---------
Q psy8895 331 LYKEDDSAT--------E------------------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK--------- 372 (479)
Q Consensus 331 ~~~~~~~~~--------~------------------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~--------- 372 (479)
-+|.++... . +. ..++.++.+|.++++|.++++.+..++...
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 555443211 0 11 357778899999999999999987764221
Q ss_pred --Cce------------------------EEEEEeCCCcEEEEEcC----------------------------------
Q psy8895 373 --KSV------------------------RSVALHPTLYMFASASP---------------------------------- 392 (479)
Q Consensus 373 --~~v------------------------~~i~~~~~~~~l~s~s~---------------------------------- 392 (479)
..+ ..++++|+..++.....
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 011 14688898766654321
Q ss_pred ----------CcEEEEeCCCCeEEeeecCCcceEEEEEE-cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 393 ----------DNIKQWKCPEGKFIQNLPGHNAIINSICV-NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 393 ----------d~i~~w~~~~~~~~~~~~~h~~~v~~l~~-~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
+.+..||..+++.+-..+... .+....+ ..++.++.++.||.+++||.+||+.+.++++.
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 348889999999876654322 2222223 34568888999999999999999999877654
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.74 E-value=1.1e-06 Score=91.46 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCccEEEEEEcCCCcEEEEEeC----CCeEEEEECCCCc-eEEEEecCCcCEEEEEEcCCCCEEE-EEECC---CcEEEE
Q psy8895 218 HLGWVRCVAVEPGNEWFATGSA----DKIIKVWDLATGK-LKLSLTGHVGSVRGLTVSPRHPYLF-SCGDD---RTVKCW 288 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~l~sgs~----d~~i~iWd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d---~~i~~w 288 (479)
|...+..+.++|||++|+.... +..|.++|+.++. ....+..+....... +++++..++ ....+ +.|..+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~ 310 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV 310 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 3445678899999998754332 2589999998763 344556666555554 556666554 44333 578889
Q ss_pred ECCCCCcc-cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC--cEEEEECCCCeeE
Q psy8895 289 DLEYNKAP-VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC--TIRLWDLAAGKSL 365 (479)
Q Consensus 289 d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~--~v~iwd~~~~~~~ 365 (479)
|+...... ... ...+...+. .++++++.++... ..++ .|++||+..+ ..
T Consensus 311 d~~~~~~~~~~~-l~~~~~~~~--~~s~~g~~lv~~~------------------------~~~g~~~l~~~d~~g~-~~ 362 (693)
T 3iuj_A 311 DAANPGPAHWRD-LIPERQQVL--TVHSGSGYLFAEY------------------------MVDATARVEQFDYEGK-RV 362 (693)
T ss_dssp ETTSCCGGGCEE-EECCCSSCE--EEEEETTEEEEEE------------------------EETTEEEEEEECTTSC-EE
T ss_pred eCCCCCccccEE-EecCCCCEE--EEEEECCEEEEEE------------------------EECCeeEEEEEECCCC-ee
Confidence 98765431 000 011222232 5666666554332 2222 4677777643 33
Q ss_pred EEEc-cCCCceEEEEEeCCCcEE-EEEcC----CcEEEEeCCCCeE
Q psy8895 366 CTLT-NHKKSVRSVALHPTLYMF-ASASP----DNIKQWKCPEGKF 405 (479)
Q Consensus 366 ~~~~-~h~~~v~~i~~~~~~~~l-~s~s~----d~i~~w~~~~~~~ 405 (479)
..+. .....+..+.+++++..+ .+.+. ..+..||..+++.
T Consensus 363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 4443 234567777777776533 33332 3588888877654
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.73 E-value=6.4e-07 Score=92.95 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=140.4
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecC--CcCEEEEEEcC---CCCEEEEEE-----CCCcEEEEECCCCCcccCCC
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGH--VGSVRGLTVSP---RHPYLFSCG-----DDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~---~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~ 300 (479)
+..++.++.|+.|..+|.++|+.+..+... ......+..+| ++..++..+ .++.|..||.++++......
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 557888889999999999999998877642 11101111111 443333222 36899999998877543211
Q ss_pred CCC--C---------------------------CCCeEEEEEeCCCCEEEEEeCCCe-------------------EEEE
Q psy8895 301 SMD--S---------------------------ESGIFSMTFDNSGSRLITTEADKT-------------------VKLY 332 (479)
Q Consensus 301 ~~~--~---------------------------~~~i~~~~~~~~~~~l~~~~~d~~-------------------i~~~ 332 (479)
... . ......+.+++....++.++.++. |.-+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 000 0 000124678888888888776653 6666
Q ss_pred eCCCCCC---------------C-----------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC-C---------
Q psy8895 333 KEDDSAT---------------E-----------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK-K--------- 373 (479)
Q Consensus 333 ~~~~~~~---------------~-----------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~--------- 373 (479)
|.++.+. . +. ..++.++.+|.++++|.++++.+...+... .
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 6554321 0 01 146678899999999999999875432110 0
Q ss_pred -----------------------------ceEEEEEeCCCcEEEEEc---------------------------------
Q psy8895 374 -----------------------------SVRSVALHPTLYMFASAS--------------------------------- 391 (479)
Q Consensus 374 -----------------------------~v~~i~~~~~~~~l~s~s--------------------------------- 391 (479)
.-..++++|+..++....
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 001268888766655431
Q ss_pred -------------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 392 -------------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 392 -------------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.+.+..||..+|+.+-..+.+...........++.++.|+.||.++.||.+||+.+-++++.
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 13488899999998776654432222222345668889999999999999999998777654
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.68 E-value=1.2e-05 Score=77.63 Aligned_cols=180 Identities=12% Similarity=0.108 Sum_probs=113.1
Q ss_pred EEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcccC---
Q psy8895 225 VAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEYNKAPVQ--- 298 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~--- 298 (479)
++|+|||++++.+.. ++.|.+.|+.+++.+..+.--. . ....|++ +.+++.+.||++.+.+...++....
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 478899999988774 5789999999999887776321 1 2223322 3445556677766666633322100
Q ss_pred CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCCeEEEEe
Q psy8895 299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESHPVITGS 349 (479)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~l~sgs 349 (479)
............+.+.+++..++..+..+.+.+.|..... ..+...++...
T Consensus 258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 258 VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 0000000001124567777776666677777777753210 01123344432
Q ss_pred C----------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEc--CCcEEEEeCCCCeEEeee
Q psy8895 350 H----------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASAS--PDNIKQWKCPEGKFIQNL 409 (479)
Q Consensus 350 ~----------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s--~d~i~~w~~~~~~~~~~~ 409 (479)
. +++|.+.|+.+.+.+.++.-. .....++|+||++ ++.++. ++.|.++|..+++.++++
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 1 357999999999999988632 2478999999987 666665 346999999999999886
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.66 E-value=7.4e-06 Score=78.41 Aligned_cols=215 Identities=11% Similarity=0.073 Sum_probs=136.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCC---
Q psy8895 230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES--- 306 (479)
Q Consensus 230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~--- 306 (479)
++..++.++.++.|..+|..+|+.++............... + ..++.++.++.|..+|.++++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 35677778899999999999999887776543221112222 3 367778889999999998776442211100000
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCcEEEEECC
Q psy8895 307 GIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------EESHPVITGSHDCTIRLWDLA 360 (479)
Q Consensus 307 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~v~iwd~~ 360 (479)
........ +..++.+..++.+..++..+... .....++.++.++.+..+|.+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 00011111 34566666677776666543210 012346778889999999999
Q ss_pred CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC-CcceEEEEEEcCCCEEEEEeCCCcEEEE
Q psy8895 361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPG-HNAIINSICVNNEGVLVSGADNGTMCFW 439 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~~~~l~sg~~dg~i~lW 439 (479)
+++.+..... .....+... ++.++++..++.+..+|..+++.+..... ....+....+ .++.|+.++.+|.+.++
T Consensus 258 tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp TCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEE
T ss_pred CCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEE
Confidence 9998877642 234445544 55666666666899999999988765542 2222222222 25688888999999999
Q ss_pred ecCCCeEEEEEEE
Q psy8895 440 DWRTGYNFQRLQV 452 (479)
Q Consensus 440 d~~~~~~~~~~~~ 452 (479)
|.++|+.+.+.+.
T Consensus 334 d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 334 NVEDGRFVAQQKV 346 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999988776654
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.60 E-value=1.1e-05 Score=74.72 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=105.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEE----EEC------------
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFS----CGD------------ 281 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s----~~~------------ 281 (479)
+..++++++|+++++...++.|.+|+.. ++........ ...+..++++++|.+++| |..
T Consensus 88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~ 166 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL 166 (305)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence 4567788888877766666788899876 5543221111 134668999999998886 321
Q ss_pred -CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEeCCCCCC---------------
Q psy8895 282 -DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD------KTVKLYKEDDSAT--------------- 339 (479)
Q Consensus 282 -d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~--------------- 339 (479)
.+.|..+|..+++..... .......++|+|+++.+..+... +.|..|+......
T Consensus 167 ~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd 242 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD 242 (305)
T ss_dssp SCEEEEEECSSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred CCCeEEEEcCCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence 245777776544332111 12345678999999988777655 6788887542110
Q ss_pred ----CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEe
Q psy8895 340 ----EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWK 399 (479)
Q Consensus 340 ----~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~ 399 (479)
.....+..+..+ .|.+||. .++.+..+..+. .+..++|+|++..|..++.+.+...+
T Consensus 243 gi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 243 GFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred eEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 011124444444 4899997 466777766554 58899999887655555556554433
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.58 E-value=3.1e-05 Score=74.06 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=132.8
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecCC---------cCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV---------GSVR-GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~---------~~v~-~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
+..++.++.++.|..+|..+|+.++.+.... ..+. .... ++..++.++.++.|..+|.++++......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5677888889999999999999887766421 2232 2233 34467778899999999998776542211
Q ss_pred CCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CCCCeEEEEeCCCcEEEEEC
Q psy8895 301 SMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------EESHPVITGSHDCTIRLWDL 359 (479)
Q Consensus 301 ~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~l~sgs~d~~v~iwd~ 359 (479)
... ..... .. .+..+++++.++.+..++..+... .....++.++.++.+..+|.
T Consensus 131 ~~~~~~~~p---~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRP---VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCC---EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEET
T ss_pred CCCceEcCC---EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEEC
Confidence 110 01111 11 134677777777777777543321 01235677888999999999
Q ss_pred CCCeeEEEEccCCCc----------eEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895 360 AAGKSLCTLTNHKKS----------VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~----------v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~s 429 (479)
.+++.+......... +.......++.+++++.++.+..+|..+|+.+...... ....+... ++.+..
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~-~~~l~~ 282 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIVD-GNRIYL 282 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEEE-TTEEEE
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceEE-CCEEEE
Confidence 999988776432110 10110111455566555667999999999887655432 23334433 567777
Q ss_pred EeCCCcEEEEecCCCeEEEEE
Q psy8895 430 GADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 430 g~~dg~i~lWd~~~~~~~~~~ 450 (479)
++.++.+..+|.++|+.+-+.
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEee
Confidence 888999999999999876443
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.55 E-value=4.6e-08 Score=93.72 Aligned_cols=204 Identities=12% Similarity=0.018 Sum_probs=102.2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC-EEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCC
Q psy8895 230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-VRG-LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG 307 (479)
Q Consensus 230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~-v~~-v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 307 (479)
++..+++++.|+.|..||.++|+.+..+..+... +.+ ..+. ++..+++++.|+.++.||.++++....... ..
T Consensus 48 ~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~- 122 (369)
T 2hz6_A 48 EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF- 122 (369)
T ss_dssp --CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------
T ss_pred CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-
Confidence 3556666778999999999998877666543211 100 0111 234667788899999999988765433211 11
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------CCC-----CeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895 308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------EES-----HPVITGSHDCTIRLWDLAAGKSLCTLT 369 (479)
Q Consensus 308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------~~~-----~~l~sgs~d~~v~iwd~~~~~~~~~~~ 369 (479)
...+.|.+..+++++.++.+..||..+... ... ..++.++.|+.++.||.++++.+.+..
T Consensus 123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 123 --ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred --cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 123345777888888889999888765432 011 467889999999999999999988876
Q ss_pred cCCCceEEEEEeCCCcEEEE---EcCCcEEEEeCCCCe----EEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895 370 NHKKSVRSVALHPTLYMFAS---ASPDNIKQWKCPEGK----FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR 442 (479)
Q Consensus 370 ~h~~~v~~i~~~~~~~~l~s---~s~d~i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~ 442 (479)
-....+....+++++...+. ..++.+..+|..+|+ .+-...... .+.+.. -.++.|+.++.||.+...+..
T Consensus 201 ~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~-~~~sp~-~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 201 YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK-ETEAKS-KLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC-HHHHHH-HSEEEECBEECSSCEECCEEE
T ss_pred CCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc-cccccc-cccceEEEecccCCEEecCcc
Confidence 33322333445556643211 111223334443443 221111000 010000 124567778888888888765
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.51 E-value=2e-06 Score=81.40 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=120.4
Q ss_pred CCCccEEEEEEcCCCcEEEEEeC-----CCeEEEEECCCCceEEEEecC------CcCEEEEEEcCCCCEE-EEEE---C
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSA-----DKIIKVWDLATGKLKLSLTGH------VGSVRGLTVSPRHPYL-FSCG---D 281 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~-----d~~i~iWd~~~~~~~~~~~~h------~~~v~~v~~~~~~~~l-~s~~---~ 281 (479)
+|...+.+++++++|+++++-.. +..|.+||+.+++.+..+... ......+++++++..+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35567899999999987776544 578999999999876665432 2346889999864444 5544 6
Q ss_pred CCcEEEEECCCCCcccCCC---CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---CCCCCCCeEEEEeCCC-cE
Q psy8895 282 DRTVKCWDLEYNKAPVQPG---SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD---SATEESHPVITGSHDC-TI 354 (479)
Q Consensus 282 d~~i~~wd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~l~sgs~d~-~v 354 (479)
++.|.+||+.+++...... ...... ..+..++..+.+...+++++.|.... ...++...|+.+..++ .+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~----~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPED----IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCS----CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccc----cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 7899999987654321110 000000 11112233333333344433332110 0011222333333333 22
Q ss_pred EEEECC---CC-----eeEE--EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC-CcceEEEEEEc
Q psy8895 355 RLWDLA---AG-----KSLC--TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG-HNAIINSICVN 422 (479)
Q Consensus 355 ~iwd~~---~~-----~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~ 422 (479)
..++.. .+ +... ...++......+++++++.++++...+ .|.+||..+++....... +...+..+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 222211 00 0000 111233345678999999999888766 499999856765333222 24568899999
Q ss_pred CCC-EEEEEeCCCcEEEE
Q psy8895 423 NEG-VLVSGADNGTMCFW 439 (479)
Q Consensus 423 ~~~-~l~sg~~dg~i~lW 439 (479)
+++ ++++.+..+.+.+|
T Consensus 300 ~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TTSCEEEEECCGGGSGGG
T ss_pred CCCcEEEEeCcccccccc
Confidence 888 56666555455444
No 228
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.51 E-value=5.2e-05 Score=69.94 Aligned_cols=188 Identities=13% Similarity=0.154 Sum_probs=113.8
Q ss_pred CCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895 260 HVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA 338 (479)
Q Consensus 260 h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 338 (479)
....-.+..|+++.. .+++...++.|..||..+..... ......+..+.+++++..++. . +..|..|+.....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 333456788888654 45555678899999987654321 112356889999999995444 4 4577778765321
Q ss_pred C---------------------CCCCeEEEEeC---------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE-
Q psy8895 339 T---------------------EESHPVITGSH---------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF- 387 (479)
Q Consensus 339 ~---------------------~~~~~l~sgs~---------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l- 387 (479)
. .+....++... ...-.+|.+.....+..+..+....+.++|+|++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 1 11122222211 1223444443222222222223346789999998744
Q ss_pred EEEcC-CcEEEEeC--CCCeE-----EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 388 ASASP-DNIKQWKC--PEGKF-----IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 388 ~s~s~-d~i~~w~~--~~~~~-----~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
++.+. +.|..|+. .++.. ...+..+.+....++++++| +.++...++.|..||.++|+.+..+.+.
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 55554 45888886 45543 22333345678889999988 5666667788999999999888776543
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.49 E-value=8.2e-06 Score=77.45 Aligned_cols=176 Identities=7% Similarity=-0.014 Sum_probs=105.3
Q ss_pred EEEcCCCcEEEEEeC--CCeEEE--EECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCC-----CC
Q psy8895 225 VAVEPGNEWFATGSA--DKIIKV--WDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEY-----NK 294 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~--d~~i~i--Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~-----~~ 294 (479)
++++|||++++.+.. +..+.+ +|+.+ +..+.-- +. ..+.|++. .+++.+.|+.+.+.|++. ++
T Consensus 129 ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 129 IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp EEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred EEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 578899999888875 467888 99877 3333211 11 11233332 344556788888888875 22
Q ss_pred cccCC-CCCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCC
Q psy8895 295 APVQP-GSMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESH 343 (479)
Q Consensus 295 ~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~ 343 (479)
..... .... ...+. . .+++..++..+. +.+.+.|..... ..+..
T Consensus 202 v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred EEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 11100 0000 11122 2 455555544444 677666653210 11233
Q ss_pred eEEEEeC---------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEc--CCcEEEEeCCCCeEEeeecC
Q psy8895 344 PVITGSH---------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASAS--PDNIKQWKCPEGKFIQNLPG 411 (479)
Q Consensus 344 ~l~sgs~---------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s--~d~i~~w~~~~~~~~~~~~~ 411 (479)
.++.+.. +..+.++|+.+.+.+.++.... ....++|+||++ ++++.. ++.+.++|..+++.+++++.
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 4544332 2356699999999988876433 578999999986 566665 45699999999999998875
Q ss_pred Cc
Q psy8895 412 HN 413 (479)
Q Consensus 412 h~ 413 (479)
..
T Consensus 356 g~ 357 (368)
T 1mda_H 356 DK 357 (368)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.45 E-value=2.7e-06 Score=79.62 Aligned_cols=209 Identities=12% Similarity=0.108 Sum_probs=136.2
Q ss_pred EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895 226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE 305 (479)
Q Consensus 226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 305 (479)
.+..+| .+..++.++.|..|| .+++....+......+.++...+++..+ .++.+ |..+|. +++.........
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~-- 97 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKK-- 97 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC----
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCC--
Confidence 343444 456667788899999 8888766655444556777777777543 34443 888885 333322211111
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895 306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLT 369 (479)
Q Consensus 306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~ 369 (479)
......... +..+..++.++.+..++.. ... .....+..++.++.+..+|.. ++.+..+.
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence 111112222 5567777777777777754 110 113457778888999999998 77777766
Q ss_pred cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895 370 NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 370 ~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~ 449 (479)
.....+.++.+.+++.++++. +.+..+| .+++...........+.+++..+++.|..++.++.+..+| .+|..+..
T Consensus 174 ~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~ 249 (330)
T 3hxj_A 174 TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWR 249 (330)
T ss_dssp CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEE
T ss_pred cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEE
Confidence 556667788888888877766 7799999 7777766666555667788888888777788888888887 45655544
Q ss_pred E
Q psy8895 450 L 450 (479)
Q Consensus 450 ~ 450 (479)
+
T Consensus 250 ~ 250 (330)
T 3hxj_A 250 F 250 (330)
T ss_dssp E
T ss_pred e
Confidence 3
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.41 E-value=0.00027 Score=63.38 Aligned_cols=190 Identities=12% Similarity=0.051 Sum_probs=124.5
Q ss_pred EEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895 222 VRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 297 (479)
...+.|++++.++++.+. ++.|.+.|+.+++.+..+.--. .....++++ +..++ +.-.++.+.++|.++.+...
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 468999998766666653 5799999999999887765221 233455665 33444 44467899999987655432
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-----C
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-----K 372 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-----~ 372 (479)
........+ +.+ .++++. ++.+..+++|.++|..+.+.+.++.-. -
T Consensus 101 ~i~~g~~~g--~gl--t~Dg~~-------------------------l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 101 NFTHQMKDG--WGL--ATDGKI-------------------------LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp EEECCSSSC--CEE--EECSSS-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EEECCCCCe--EEE--EECCCE-------------------------EEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 211000111 112 222322 333345677888888888777776521 1
Q ss_pred CceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCC-------------cceEEEEEEcCCC--EEEEEeCCCcE
Q psy8895 373 KSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGH-------------NAIINSICVNNEG--VLVSGADNGTM 436 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~--~l~sg~~dg~i 436 (479)
..++.+.+. ++.+++.... +.|.+-|..+++.+..+.-. ....+.+++++++ .++++...+++
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 236778888 6778877754 46999999999988877532 1367899999887 67888888888
Q ss_pred EEEecCC
Q psy8895 437 CFWDWRT 443 (479)
Q Consensus 437 ~lWd~~~ 443 (479)
..-++.+
T Consensus 231 ~~i~l~~ 237 (266)
T 2iwa_A 231 FEIKLHL 237 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8777654
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.40 E-value=1.6e-05 Score=74.37 Aligned_cols=203 Identities=12% Similarity=0.094 Sum_probs=131.8
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEE
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFS 310 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~ 310 (479)
+..+..++.++.+..+|.. ++...........+.++...+++. +..++.++.|..+|.+ ++...... .....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~--~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK--TNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE--CSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe--cCCCceee
Confidence 4557778888999999988 877777766655666777777776 4556778899999987 44321110 01122334
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCC--------C------C-CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895 311 MTFDNSGSRLITTEADKTVKLYKEDDS--------A------T-EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV 375 (479)
Q Consensus 311 ~~~~~~~~~l~~~~~d~~i~~~~~~~~--------~------~-~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v 375 (479)
+..++++... .++ +.+..++.... . . .....+..++.++.+..+|. +++.+..+......+
T Consensus 182 ~~~d~~g~l~-v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 182 ASIGKDGTIY-FGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIE 257 (330)
T ss_dssp CEECTTCCEE-EES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred eEEcCCCEEE-EEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence 4555555533 333 55555552110 0 0 11235777888888988874 566666665444445
Q ss_pred EEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895 376 RSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 376 ~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~ 443 (479)
.++.+.+++.++++..++.+..+|. +++...........+.++...+++.|..|+.+|.+++...+.
T Consensus 258 ~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 258 SSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred ccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 5667777888887776668988985 677666555445566777887888888899999999877554
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=3.6e-05 Score=79.53 Aligned_cols=221 Identities=15% Similarity=0.162 Sum_probs=134.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecCC----cCEEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCCcccCC
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV----GSVRG-LTVSPRHPYLFSCGD------DRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~----~~v~~-v~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~ 299 (479)
+..++.++.|+.|..+|..+|+.+..+.... ..+.+ -.+. ++ .++.+.. ++.|..+|.++++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567788889999999999999988876431 11111 0111 34 4444432 588999999887754321
Q ss_pred CCC--CC---------------------------CCCeEEEEEeCCCCEEEEEeCCCe-------------------EEE
Q psy8895 300 GSM--DS---------------------------ESGIFSMTFDNSGSRLITTEADKT-------------------VKL 331 (479)
Q Consensus 300 ~~~--~~---------------------------~~~i~~~~~~~~~~~l~~~~~d~~-------------------i~~ 331 (479)
... .. ......+++++....++.++.++. |.-
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 100 00 001123577777777777765542 555
Q ss_pred EeCCCCCC------------------C--------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC----------
Q psy8895 332 YKEDDSAT------------------E--------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK---------- 372 (479)
Q Consensus 332 ~~~~~~~~------------------~--------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~---------- 372 (479)
+|.++.+. + +. ..++.++.+|.++++|..+++.+...+...
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 55443211 0 01 136778899999999999999885443211
Q ss_pred --Cce------------------------EEEEEeCCCcEEEEE------------------------------------
Q psy8895 373 --KSV------------------------RSVALHPTLYMFASA------------------------------------ 390 (479)
Q Consensus 373 --~~v------------------------~~i~~~~~~~~l~s~------------------------------------ 390 (479)
.++ ..++++|+..++...
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 125777765544321
Q ss_pred cC-CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 391 SP-DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 391 s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.. +.+..||..+|+.+-+.+.+...........++.++.|+.|+.++.||.++|+.+.++++.
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 01 3488899999998755443222111112235668888999999999999999999877664
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.29 E-value=0.0014 Score=58.97 Aligned_cols=206 Identities=9% Similarity=0.029 Sum_probs=120.6
Q ss_pred ccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 297 (479)
.....++++++++ ++++-..++.|..+++..+.....+.........+++++++..++ +-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3467899998655 455555678999999976654433333334678999999765555 44556789999986432211
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCceE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSVR 376 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v~ 376 (479)
.. .........++++|++..+..+.... ..+.|..+++... ....+ ........
T Consensus 116 ~~--~~~~~~P~~i~vd~~~g~lyv~~~~~----------------------~~~~I~~~~~dg~-~~~~~~~~~~~~P~ 170 (267)
T 1npe_A 116 LF--DTGLVNPRGIVTDPVRGNLYWTDWNR----------------------DNPKIETSHMDGT-NRRILAQDNLGLPN 170 (267)
T ss_dssp EE--CSSCSSEEEEEEETTTTEEEEEECCS----------------------SSCEEEEEETTSC-CCEEEECTTCSCEE
T ss_pred EE--ECCCCCccEEEEeeCCCEEEEEECCC----------------------CCcEEEEEecCCC-CcEEEEECCCCCCc
Confidence 11 01123467788888666554443210 0123333333221 11111 11223468
Q ss_pred EEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 377 SVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 377 ~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.++++|++ .++++.... .|..++...........+- .....+++..+..+++...++.|..+|..+|+.++.+.
T Consensus 171 gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 89999975 455555544 5889998654433333322 22355666633355666667899999999998876664
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.23 E-value=9.2e-05 Score=70.97 Aligned_cols=194 Identities=10% Similarity=0.051 Sum_probs=117.0
Q ss_pred EEEEcCCCcEEEEEeCC------CeEEEEECCCCceEEEEecCCcC---EEEEEEcCCCCEEEEEE--------------
Q psy8895 224 CVAVEPGNEWFATGSAD------KIIKVWDLATGKLKLSLTGHVGS---VRGLTVSPRHPYLFSCG-------------- 280 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d------~~i~iWd~~~~~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~-------------- 280 (479)
.+..+|+| ++++...+ +.|.+.|..+++.+..+..-..+ -..+-|+|+++.+++..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence 35667888 77766555 78999999999998887622111 23467899999888874
Q ss_pred -----CCCcEEEEECCCCCcccCCCCCC-CCCCeEEEEE--eCCCCEEEEEeC------CCeEEEEeCCCCCCCCCCeEE
Q psy8895 281 -----DDRTVKCWDLEYNKAPVQPGSMD-SESGIFSMTF--DNSGSRLITTEA------DKTVKLYKEDDSATEESHPVI 346 (479)
Q Consensus 281 -----~d~~i~~wd~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~l~ 346 (479)
.+.+|.+||+.+.+..... ..+ .......+.| +|+++++.+++. +++|.+|..+... +
T Consensus 221 ~~~~~~~d~V~v~D~~~~k~~~tI-~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~------~- 292 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRKRKRIHSL-TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK------W- 292 (462)
T ss_dssp THHHHSCCEEEEEETTTTEEEEEE-ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE------E-
T ss_pred hhhhccCCEEEEEECCCCcEeeEE-ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc------e-
Confidence 3689999999875432221 111 1123445656 899998877663 4566665543210 0
Q ss_pred EEeCCCcEEEEECCCCeeEEEEc---c----CCCceEEEEEeCCCcEEEEEcC--CcEEEEeCC---CCeEEeeecCCc-
Q psy8895 347 TGSHDCTIRLWDLAAGKSLCTLT---N----HKKSVRSVALHPTLYMFASASP--DNIKQWKCP---EGKFIQNLPGHN- 413 (479)
Q Consensus 347 sgs~d~~v~iwd~~~~~~~~~~~---~----h~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~---~~~~~~~~~~h~- 413 (479)
..+.+.|+.+.+...++. . -......|.+|+|++.|..+.. +.|.++|+. +.+++..+.-..
T Consensus 293 -----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 293 -----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp -----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred -----eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence 112333433322211111 0 0235688999999987765543 359999985 234554443210
Q ss_pred -------------ceEEEEEEcCCC-EEEEEe
Q psy8895 414 -------------AIINSICVNNEG-VLVSGA 431 (479)
Q Consensus 414 -------------~~v~~l~~~~~~-~l~sg~ 431 (479)
+.-..+.+++|| +|+.+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 124678899999 666665
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=0.00075 Score=59.90 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=111.1
Q ss_pred EEEEEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCccc
Q psy8895 222 VRCVAVEPGNEWFATGSADK--IIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~ 297 (479)
...+.|+ ++.++.+.+.+| .|++.|+.+++.+..+.-... .-..+++. +..|... -.++.+.++|.++.+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4678888 677888888776 899999999998887654322 12334554 4444443 468899999998765432
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC--C---
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH--K--- 372 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~--- 372 (479)
+... ..++ +.++ +++.. ++....+++|.++|..+.+.+.+++-. .
T Consensus 122 ti~~-~~eG--~glt--~dg~~-------------------------L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 122 SFNY-DGEG--WGLT--HNDQY-------------------------LIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp EEEC-SSCC--CCEE--ECSSC-------------------------EEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred EEEC-CCCc--eEEe--cCCCE-------------------------EEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 2111 1111 1111 12222 333334567888888888777776431 1
Q ss_pred CceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------------cceEEEEEEcCCC-E-EEEE
Q psy8895 373 KSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------------NAIINSICVNNEG-V-LVSG 430 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------------~~~v~~l~~~~~~-~-l~sg 430 (479)
..++.+.+. ++.+++....+ .|.+.|..+++.+..+.-. ....+.++++|+. . ++||
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 334567776 67888877644 5999999999988776432 2367899999876 4 5555
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.20 E-value=7.9e-05 Score=77.25 Aligned_cols=201 Identities=10% Similarity=0.101 Sum_probs=122.6
Q ss_pred EEEEcCCCcEEEEEeCCCe-------------------EEEEECCCCceEEEEec--CC-------cCEEEEEEcCCCC-
Q psy8895 224 CVAVEPGNEWFATGSADKI-------------------IKVWDLATGKLKLSLTG--HV-------GSVRGLTVSPRHP- 274 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d~~-------------------i~iWd~~~~~~~~~~~~--h~-------~~v~~v~~~~~~~- 274 (479)
.++++|++.+++.++.++. |..+|.++|+.+..++. |. .+........+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5778888888888887763 99999999999988765 32 1222223333554
Q ss_pred --EEEEEECCCcEEEEECCCCCcccCCCCC--------------------------CCCC-----------CeEEEEEeC
Q psy8895 275 --YLFSCGDDRTVKCWDLEYNKAPVQPGSM--------------------------DSES-----------GIFSMTFDN 315 (479)
Q Consensus 275 --~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------------------------~~~~-----------~i~~~~~~~ 315 (479)
.++.++.+|.++++|.++++........ .... ....++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 6788899999999999887754110000 0000 011267888
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCC-CCC-eE----------------EEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895 316 SGSRLITTEADKTVKLYKEDDS--ATE-ESH-PV----------------ITGSHDCTIRLWDLAAGKSLCTLTNHKKSV 375 (479)
Q Consensus 316 ~~~~l~~~~~d~~i~~~~~~~~--~~~-~~~-~l----------------~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v 375 (479)
+...+++...+....++..... ... ... .+ .....+++++.||+.+++.+.+++.+.. +
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~ 477 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-F 477 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-c
Confidence 8888887776655555433221 000 000 00 0001258899999999999988765532 2
Q ss_pred EEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc-eEEEEEEcCCC
Q psy8895 376 RSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA-IINSICVNNEG 425 (479)
Q Consensus 376 ~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~-~v~~l~~~~~~ 425 (479)
..-.+...+.++..++.| .++.||..+|+.+..++...+ ...-+.+..+|
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 333444445555555555 599999999999877654322 22334556666
No 238
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.15 E-value=0.001 Score=62.08 Aligned_cols=178 Identities=13% Similarity=0.082 Sum_probs=107.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---
Q psy8895 264 VRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--- 339 (479)
Q Consensus 264 v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--- 339 (479)
..+..|+|++. .+++...++.|..||.++++.... .....+.++.+++++..++.. . ..+.+|+......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~----~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH----ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE----ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE----ECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence 34667888754 455556778999999876543211 113468889999988766654 3 3477777543210
Q ss_pred ------------------CCCCeEEEEeC------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE-EEEcC-C
Q psy8895 340 ------------------EESHPVITGSH------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF-ASASP-D 393 (479)
Q Consensus 340 ------------------~~~~~l~sgs~------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~-d 393 (479)
.++...++... .+.|..+| +++. ..+..+......++|+|++..+ ++.+. +
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 11222332221 23444555 3433 2232233456789999998754 44444 3
Q ss_pred cEEEEeCC--CC-e-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 394 NIKQWKCP--EG-K-----FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 394 ~i~~w~~~--~~-~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.|.+|+.. ++ + ....+.........+++++++ ++++...++.|..||. +|+.+..+.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 59999975 55 3 223334445567889999888 5555556789999998 566666654
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.06 E-value=0.0019 Score=57.29 Aligned_cols=177 Identities=7% Similarity=0.105 Sum_probs=112.6
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 301 (479)
...+.|+ ++.++++.+.++.|++.|+++++.+..+-.....-..+++..+ +..+..-.++.+.++|.++.+...+...
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4678887 4678888899999999999999887766111112234566543 3333445788999999987654332211
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--CC---CceE
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--HK---KSVR 376 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~---~~v~ 376 (479)
..++ +.++ ++++. |+.+..+++|.++|..+.+.+.+++- +. ..++
T Consensus 135 -~~eG--wGLt--~Dg~~-------------------------L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 135 -SGEG--WGLC--YWNGK-------------------------LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp -SSCC--CCEE--EETTE-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred -CCce--eEEe--cCCCE-------------------------EEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 1111 1122 12233 33334466788888888777776643 21 2346
Q ss_pred EEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCC-------------cceEEEEEEcCCC--EEEEEe
Q psy8895 377 SVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGH-------------NAIINSICVNNEG--VLVSGA 431 (479)
Q Consensus 377 ~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~--~l~sg~ 431 (479)
.+.+. ++.+++.... +.|.+.|..+++.+..+.-. ....+.++++|++ +++||-
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 67776 6788887754 46999999999987765421 2467999999876 566663
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.03 E-value=0.00029 Score=71.29 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=72.5
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEccCC-------------Cce--------------------------EEEEEeCCCc
Q psy8895 345 VITGSHDCTIRLWDLAAGKSLCTLTNHK-------------KSV--------------------------RSVALHPTLY 385 (479)
Q Consensus 345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~-------------~~v--------------------------~~i~~~~~~~ 385 (479)
++.++.+|.+.++|..+++.+...+-.. .++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5667889999999999999887764221 111 2357787755
Q ss_pred EEEEEc--------------------------------------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEE
Q psy8895 386 MFASAS--------------------------------------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVL 427 (479)
Q Consensus 386 ~l~s~s--------------------------------------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l 427 (479)
++.... .+.+..||..+++.+-+.+.............++.+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 478 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV 478 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence 444332 124888999999876554322111111112346777
Q ss_pred EEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 428 VSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 428 ~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
+.++.||.++.||.++|+.+-++++.
T Consensus 479 ~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 479 WYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 77999999999999999998877654
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.02 E-value=0.00035 Score=70.74 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=39.6
Q ss_pred cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.+..||..+|+.+-..+.............++.++.++.|+.++.||.+||+.+-+.++.
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 477888888887654421100000111234667777999999999999999998776554
No 242
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.95 E-value=0.00067 Score=70.15 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCceEEEEecCCcC--------------------------------EEEEEEcCCCCEEEEEECCC----
Q psy8895 240 DKIIKVWDLATGKLKLSLTGHVGS--------------------------------VRGLTVSPRHPYLFSCGDDR---- 283 (479)
Q Consensus 240 d~~i~iWd~~~~~~~~~~~~h~~~--------------------------------v~~v~~~~~~~~l~s~~~d~---- 283 (479)
++.|..+|..+|+.+..+...... ...++++|++..++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 789999999999998887643211 12467888888888776553
Q ss_pred ---------------cEEEEECCCCCcccCCCCCC-------CCCCeEEEEEeCCC---CEEEEEeCCCeEEEEeCCCCC
Q psy8895 284 ---------------TVKCWDLEYNKAPVQPGSMD-------SESGIFSMTFDNSG---SRLITTEADKTVKLYKEDDSA 338 (479)
Q Consensus 284 ---------------~i~~wd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~ 338 (479)
.|..+|.++++......... .......+....+| ..++.++.++.+.++|..+.+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 58889998877543211111 11222233333355 567888888888888765432
Q ss_pred C----------------------------------------------------CCCCeEEEEeC----------------
Q psy8895 339 T----------------------------------------------------EESHPVITGSH---------------- 350 (479)
Q Consensus 339 ~----------------------------------------------------~~~~~l~sgs~---------------- 350 (479)
. +....+++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 1 01234444322
Q ss_pred ---------------------------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCC
Q psy8895 351 ---------------------------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPE 402 (479)
Q Consensus 351 ---------------------------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~ 402 (479)
.+.|..||+.+++.+.+++. ...+....+..++.++..++.+ .++.||..+
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 27899999999999888753 3334444455555444445554 699999999
Q ss_pred CeEEeeecCCc-ceEEEEEEcCCC
Q psy8895 403 GKFIQNLPGHN-AIINSICVNNEG 425 (479)
Q Consensus 403 ~~~~~~~~~h~-~~v~~l~~~~~~ 425 (479)
|+.+..+.-.. ....-+.+..+|
T Consensus 508 G~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 508 GEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETT
T ss_pred CceeeeeeCCCCcccCCEEEEeCC
Confidence 99988776332 222333445566
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.93 E-value=0.00022 Score=70.88 Aligned_cols=215 Identities=10% Similarity=0.050 Sum_probs=138.2
Q ss_pred CCCcEEEEEeC-CCeEEEEECCCCceEEEEecC-CcCEEEEEE-c-CCCCEEEEEE------------------CCCcEE
Q psy8895 229 PGNEWFATGSA-DKIIKVWDLATGKLKLSLTGH-VGSVRGLTV-S-PRHPYLFSCG------------------DDRTVK 286 (479)
Q Consensus 229 ~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~-~-~~~~~l~s~~------------------~d~~i~ 286 (479)
+||++++.... +..|.+-|+.+.++...+.-- ......+++ + |++.+++.++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47777665554 567999999999987755321 235788887 5 8999988875 235788
Q ss_pred EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC---------------eEEEEeCCCCC--CCCCCeEEEEe
Q psy8895 287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK---------------TVKLYKEDDSA--TEESHPVITGS 349 (479)
Q Consensus 287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~~~~~~~~~--~~~~~~l~sgs 349 (479)
+.|.++.+...+..- + +...-++++++++++++.+.+. .+.+++..... ...+.....
T Consensus 179 vID~~t~~v~~qI~V-g--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 179 AVDADKWEVAWQVLV-S--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-- 253 (595)
T ss_dssp EEETTTTEEEEEEEE-S--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred EEECCCCeEEEEEEe-C--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence 899886554332110 0 1123477889999999888663 24444432110 011111211
Q ss_pred CCCcEEEEECCC--Cee-EEEEccCCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCe------------EEeeecCC
Q psy8895 350 HDCTIRLWDLAA--GKS-LCTLTNHKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGK------------FIQNLPGH 412 (479)
Q Consensus 350 ~d~~v~iwd~~~--~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~------------~~~~~~~h 412 (479)
+.|.+.|.++ ++. +..+... .....+.++||++++..+... .+.++|..+.+ ....+.--
T Consensus 254 --~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 254 --NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp --TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred --CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 5699999998 555 4555432 244689999999877776543 59999987552 23333222
Q ss_pred cceEEEEEEcCCC-EEEEEeCCCcEEEEecCC----------CeEEEEEEE
Q psy8895 413 NAIINSICVNNEG-VLVSGADNGTMCFWDWRT----------GYNFQRLQV 452 (479)
Q Consensus 413 ~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~----------~~~~~~~~~ 452 (479)
....-++|+++| ..++--.|+.|..||+.+ .+.++++.+
T Consensus 331 -~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 331 -LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp -SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred -CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 235677999999 455677899999999987 455666544
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.91 E-value=0.02 Score=60.32 Aligned_cols=222 Identities=9% Similarity=0.110 Sum_probs=141.1
Q ss_pred CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-------HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~ 291 (479)
...|.++...++|.+.+....+| +..||..+++....... ....|.++...+++.+.+. ..+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence 45688888887777655443344 88899887755432211 1356999999988876554 444 58889976
Q ss_pred CCCcccCC-----CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------C----------CCCCe
Q psy8895 292 YNKAPVQP-----GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------T----------EESHP 344 (479)
Q Consensus 292 ~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------~----------~~~~~ 344 (479)
+....... ...-....|.++..++++. +-.|+.++-+..++..... . .....
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 54322110 0111235688998888776 4456666666666532210 0 01123
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcc--------CCCceEEEEEeCCCc-EEEEEcCCcEEEEeCCCCeEEeeec----C
Q psy8895 345 VITGSHDCTIRLWDLAAGKSLCTLTN--------HKKSVRSVALHPTLY-MFASASPDNIKQWKCPEGKFIQNLP----G 411 (479)
Q Consensus 345 l~sgs~d~~v~iwd~~~~~~~~~~~~--------h~~~v~~i~~~~~~~-~l~s~s~d~i~~w~~~~~~~~~~~~----~ 411 (479)
+-.|+.++-+..||..+++...-... ....|.++...+++. +.++...+.+..++..+++...-.. .
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l 449 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL 449 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence 55678887899999876644322111 235799999999998 7777666789999988876544322 1
Q ss_pred CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895 412 HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 412 h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~ 445 (479)
+...|.++...+++.|-.|+. +-+.+||.+++.
T Consensus 450 ~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS 482 (795)
T ss_dssp SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE
T ss_pred CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe
Confidence 345789999888885555555 457789988764
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.90 E-value=0.01 Score=52.11 Aligned_cols=177 Identities=13% Similarity=0.141 Sum_probs=110.5
Q ss_pred cEEEEEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 221 WVRCVAVEPGNEWFATGSADK--IIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
....+.|++ +.++.+.+.+| .|+..|+.+++.+..+.-... .-..+++.. ++.....-.++.+.++|.++.+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEE
Confidence 456788886 66777777754 899999999999877653322 123445543 2233344568899999997765432
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC--C---
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH--K--- 372 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~--- 372 (479)
.... ...+ +.++ +++.. ++.+..+++|.++|..+.+.+.+++-. .
T Consensus 100 ti~~-~~~G--wglt--~dg~~-------------------------L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 100 RFRY-PGEG--WALT--SDDSH-------------------------LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp EEEC-SSCC--CEEE--ECSSC-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EEeC-CCCc--eEEe--eCCCE-------------------------EEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 2111 1111 1222 12222 333445667888888888777766431 1
Q ss_pred CceEEEEEeCCCcEEEEEc-CCcEEEEeCCCCeEEeeecC-------------CcceEEEEEEcCCC--EEEEE
Q psy8895 373 KSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPG-------------HNAIINSICVNNEG--VLVSG 430 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~--~l~sg 430 (479)
..++.+.+. ++.+++... .+.|.+.|..+|+.+..+.- -....+.++++|++ +++||
T Consensus 150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 150 DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 245566665 677777775 45699999999998876541 12467999999876 55665
No 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.90 E-value=0.00026 Score=74.27 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=110.9
Q ss_pred cEEEEEEc-CCCcEEEEEe-CCC----eEEEEECCCC-ceEE-EEecCCcCEEEEEEcCCCCEEEEEECC-----CcEEE
Q psy8895 221 WVRCVAVE-PGNEWFATGS-ADK----IIKVWDLATG-KLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDD-----RTVKC 287 (479)
Q Consensus 221 ~v~~~~~~-~~g~~l~sgs-~d~----~i~iWd~~~~-~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~ 287 (479)
.+...+|+ |||++||-+. .+| .|.++|+.++ +.+. .+. .....++|+||++.|+....| ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 9999877443 232 5999999998 6321 111 112357899999888776654 25777
Q ss_pred EECCCCCccc-CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe-eE
Q psy8895 288 WDLEYNKAPV-QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK-SL 365 (479)
Q Consensus 288 wd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~-~~ 365 (479)
+++.+.+... .............+.++|++++++..+..+ ....|.++|+.++. ..
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----------------------~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP----------------------ETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS----------------------SCEEEEEEESSSCTTCC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC----------------------CCceEEEEECCCCCCCc
Confidence 8886643211 100001122355778899988876543221 12346677776542 12
Q ss_pred --EEE-ccCCCceEEEEEeCCCcEEEEEcCC-----cEEEEeCCCCeEEee-ecCCcc--eEEEEEEcCCCEEEEEeCCC
Q psy8895 366 --CTL-TNHKKSVRSVALHPTLYMFASASPD-----NIKQWKCPEGKFIQN-LPGHNA--IINSICVNNEGVLVSGADNG 434 (479)
Q Consensus 366 --~~~-~~h~~~v~~i~~~~~~~~l~s~s~d-----~i~~w~~~~~~~~~~-~~~h~~--~v~~l~~~~~~~l~sg~~dg 434 (479)
..+ ........++.|+.+..++..+..+ .+..++..++..... +..|.. .+..+.+..+.++++...|+
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g 389 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG 389 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC
Confidence 333 2334455666666656555555432 366677654222222 222322 45666666555777888888
Q ss_pred cEEEEe
Q psy8895 435 TMCFWD 440 (479)
Q Consensus 435 ~i~lWd 440 (479)
..+||-
T Consensus 390 ~~~l~~ 395 (751)
T 2xe4_A 390 LTRIWT 395 (751)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 755543
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.89 E-value=0.0041 Score=57.70 Aligned_cols=219 Identities=12% Similarity=0.110 Sum_probs=129.2
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec--------------------CCcCEEEEEEcC-CCCEEEEE
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG--------------------HVGSVRGLTVSP-RHPYLFSC 279 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~--------------------h~~~v~~v~~~~-~~~~l~s~ 279 (479)
.-.+++++++|++++++..++.|..||..++... .+.. .......+++.+ ++. |+.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3456788899987888888999999998776543 2221 012578899997 664 4555
Q ss_pred ECCCcEEEEECCCCCcccCCCCC--CCCCCeEEEEEeC-CCCEEEEEeC-----------------CCeEEEEeCCCCC-
Q psy8895 280 GDDRTVKCWDLEYNKAPVQPGSM--DSESGIFSMTFDN-SGSRLITTEA-----------------DKTVKLYKEDDSA- 338 (479)
Q Consensus 280 ~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~~~~~~~~~- 338 (479)
...+.+..+|...+......... ........+++++ ++...++... .+.+..++.....
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 45556888887643221110000 1113467789999 8876665433 2556666654221
Q ss_pred ---------------CCCCCeEE-EEeCCCcEEEEECCCCe--eEEEEccCCCceEEEEEeCCCcEEEEEcC--------
Q psy8895 339 ---------------TEESHPVI-TGSHDCTIRLWDLAAGK--SLCTLTNHKKSVRSVALHPTLYMFASASP-------- 392 (479)
Q Consensus 339 ---------------~~~~~~l~-sgs~d~~v~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-------- 392 (479)
..+...++ +-+.++.|..+++.... ....+....+ ...+++++++.++++...
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 11233344 43556789999887421 1111211223 678999999988887654
Q ss_pred ---CcEEEEeCCCCeEEeeecCC----cceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895 393 ---DNIKQWKCPEGKFIQNLPGH----NAIINSICVNNEG-VLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 393 ---d~i~~w~~~~~~~~~~~~~h----~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~ 444 (479)
..|..++. .++.+..+... -..+.++++. ++ .+++...++.|..+++...
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 24777776 46666555432 2345556654 55 4555556788888887644
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.87 E-value=0.00071 Score=69.79 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=125.9
Q ss_pred EEEEcC-CCcEEEEEeCCC-----------eEEEEECCCCceE--EEEe-cCCcCEEEEEEcCCCCEEEEEEC-CCcEEE
Q psy8895 224 CVAVEP-GNEWFATGSADK-----------IIKVWDLATGKLK--LSLT-GHVGSVRGLTVSPRHPYLFSCGD-DRTVKC 287 (479)
Q Consensus 224 ~~~~~~-~g~~l~sgs~d~-----------~i~iWd~~~~~~~--~~~~-~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~ 287 (479)
.+++.+ +++.++.|+.+. .+.+||..+++.. ..+. .+.....++++..++++++.||. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 889999988653 5889999887542 2222 23333445677889999999884 568999
Q ss_pred EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CC-----CeEEEEeCCCCC---------C------------C
Q psy8895 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-AD-----KTVKLYKEDDSA---------T------------E 340 (479)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----~~i~~~~~~~~~---------~------------~ 340 (479)
||+.+....... .......-..+...++++.++.|+ .+ ..+.+||..... . .
T Consensus 270 yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 998765432211 111111122344556788888887 33 467888865421 0 1
Q ss_pred CCCeEEEEeCCC---------cEEEEECCCCeeEEEEccCC---------CceEEEEEeC-CCcEEEEEcCC--------
Q psy8895 341 ESHPVITGSHDC---------TIRLWDLAAGKSLCTLTNHK---------KSVRSVALHP-TLYMFASASPD-------- 393 (479)
Q Consensus 341 ~~~~l~sgs~d~---------~v~iwd~~~~~~~~~~~~h~---------~~v~~i~~~~-~~~~l~s~s~d-------- 393 (479)
.....+.|+.|+ .+..||..+..-......+. ..-.++.+.. ++++++.++.+
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 123345555443 46788887765333222111 1234455543 66777776521
Q ss_pred ----cEEEEeCCCCeEEeee--cCCcceE-EEEEEcCCC-EEEEEeCC-----------CcEEEEecCCCe
Q psy8895 394 ----NIKQWKCPEGKFIQNL--PGHNAII-NSICVNNEG-VLVSGADN-----------GTMCFWDWRTGY 445 (479)
Q Consensus 394 ----~i~~w~~~~~~~~~~~--~~h~~~v-~~l~~~~~~-~l~sg~~d-----------g~i~lWd~~~~~ 445 (479)
.+.+||..+.+-.... ..+.... .+.+..+++ +++.|+.+ ..+.+||..+++
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 3566776665433221 1111111 233455566 77777754 568999998764
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.85 E-value=0.00085 Score=59.54 Aligned_cols=176 Identities=11% Similarity=0.115 Sum_probs=110.4
Q ss_pred EEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcccCCCCCCCCCCeEE--EEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy8895 264 VRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPVQPGSMDSESGIFS--MTFDNSGSRLITTEADKTVKLYKEDDSAT 339 (479)
Q Consensus 264 v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 339 (479)
...+.|+ ++.++.+.+.++ .|+.+|+++++...... .+ ...+. ++.. +..+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~--~~~FgeGit~~--g~~l------------------- 99 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG--KRYFGEGISDW--KDKI------------------- 99 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC--TTCCEEEEEEE--TTEE-------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC--CccceeEEEEe--CCEE-------------------
Confidence 4788998 666667777776 89999998776432210 11 11111 1111 1111
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecCC----c-
Q psy8895 340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPGH----N- 413 (479)
Q Consensus 340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~h----~- 413 (479)
.+..-.++.+.++|..+.+.+.++...... ..++ +++ .++++.+.+.+.++|..+.+.+.+++-. .
T Consensus 100 -----y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 100 -----VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp -----EEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred -----EEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 122334778999999999999998753322 2333 444 4555555556999999998888776542 1
Q ss_pred ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecC----CCCCceEEeeehhhhc
Q psy8895 414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG----FPKPSVFFFFLAFSYL 473 (479)
Q Consensus 414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 473 (479)
..++.+.+. ++ ..+..-.+..|.+-|.++|+.+..+.+..+.. ..+...+.--+|+++.
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 335566666 56 45555568899999999999999998864321 1123334455888875
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.82 E-value=0.011 Score=62.28 Aligned_cols=219 Identities=8% Similarity=0.128 Sum_probs=140.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
|.++...++|.+.+ |+.++-+..||..+++..... ..+...|.++...+++.+.+ +..++-+..||..+.+......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 77888877787655 555545888998877654321 12345788888888776554 4444458889986543221110
Q ss_pred -----CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------CC----------CCCeEEEEeCCC
Q psy8895 301 -----SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------TE----------ESHPVITGSHDC 352 (479)
Q Consensus 301 -----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~~----------~~~~l~sgs~d~ 352 (479)
..-....|.++..++++...+ |+.. -+.+++..... .. ....+-.|+.++
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~ 330 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG 330 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence 011235688998888777554 4444 46666643211 00 112355677778
Q ss_pred cEEEEECCCCeeEEEEcc-------CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC--------CcceEE
Q psy8895 353 TIRLWDLAAGKSLCTLTN-------HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPG--------HNAIIN 417 (479)
Q Consensus 353 ~v~iwd~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~--------h~~~v~ 417 (479)
-|..++...... ..+.. ....|.++..++++.+.++...+.+..|+..+++...-... ....|.
T Consensus 331 Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 331 GLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp CEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred CeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 888888665432 12211 23469999999999998877777899999887765443211 235789
Q ss_pred EEEEcCCCE-EEEEeCCCcEEEEecCCCe
Q psy8895 418 SICVNNEGV-LVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 418 ~l~~~~~~~-l~sg~~dg~i~lWd~~~~~ 445 (479)
+++..+++. |-.|..++-|..||.+++.
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 999888886 8888887889999988764
No 251
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.79 E-value=0.003 Score=60.56 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=122.9
Q ss_pred CCCcEE-EEEeCCCeEEEEECCCC----ceEEEEe------cCC-cCEEEEEEcCCCCEEEEEECC------CcEEEEEC
Q psy8895 229 PGNEWF-ATGSADKIIKVWDLATG----KLKLSLT------GHV-GSVRGLTVSPRHPYLFSCGDD------RTVKCWDL 290 (479)
Q Consensus 229 ~~g~~l-~sgs~d~~i~iWd~~~~----~~~~~~~------~h~-~~v~~v~~~~~~~~l~s~~~d------~~i~~wd~ 290 (479)
.++++| +++-.++.|.+.|+.+. +..++++ ... ..-..+...|+| +++++..+ +.+.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 566665 55667789999999755 4555553 111 134567788999 77776544 78999998
Q ss_pred CCCCcccCCCC-CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895 291 EYNKAPVQPGS-MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT 369 (479)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~ 369 (479)
++.+....... .....--+.+.|+|+++.+++..--.- +.+ ...... ..+.. ..+.+|.+||+.+++.+.++.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p-~~~--~~g~~~--~~~~~-~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVP-NTI--EDGLKL--EHLKD-RYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCH-HHH--TTCCCT--TTHHH-HSCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCc-ccc--ccccch--hhhhh-ccCCEEEEEECCCCcEeeEEe
Confidence 87665432211 111222345778898887766531000 000 000000 00001 346789999999988888876
Q ss_pred cC-C-CceEEEEE--eCCCcEEEEEc------CC-cEEEEeCCCCeE--Eee--ecCC----------------cceEEE
Q psy8895 370 NH-K-KSVRSVAL--HPTLYMFASAS------PD-NIKQWKCPEGKF--IQN--LPGH----------------NAIINS 418 (479)
Q Consensus 370 ~h-~-~~v~~i~~--~~~~~~l~s~s------~d-~i~~w~~~~~~~--~~~--~~~h----------------~~~v~~ 418 (479)
-. . .....+.| +|++.++..+. .+ +|.+|....++. .+. +... ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 42 1 23445555 99987554443 33 465554433432 111 1110 134667
Q ss_pred EEEcCCC-E-EEEEeCCCcEEEEecCCC---eEEEEEEE
Q psy8895 419 ICVNNEG-V-LVSGADNGTMCFWDWRTG---YNFQRLQV 452 (479)
Q Consensus 419 l~~~~~~-~-l~sg~~dg~i~lWd~~~~---~~~~~~~~ 452 (479)
+.+++|+ + .++.-..+.|.++|+... ..++++.+
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 8899999 4 456666889999998633 34444444
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.79 E-value=0.0024 Score=64.58 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=41.5
Q ss_pred cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
.+..||..+|+.+-+.+.+...........++.++.|+.||.++.||.+||+.+-++++.
T Consensus 467 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 488899999987654432211111111234678888999999999999999998777653
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.77 E-value=0.0013 Score=58.90 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=102.4
Q ss_pred CEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy8895 263 SVRGLTVSPRHPYLFSCGD--DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE 340 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 340 (479)
....++|++++...++.+. ++.|++.|+++++...... .+.......+++. +..+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~fgeGi~~~--g~~l-------------------- 78 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSYFGEGLTLL--NEKL-------------------- 78 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEE--TTEE--------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCcceEEEEEe--CCEE--------------------
Confidence 3579999998755555553 5799999998776432210 0111011112221 1111
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeeEEEEccC-CCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecCC--c---
Q psy8895 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPGH--N--- 413 (479)
Q Consensus 341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~h--~--- 413 (479)
.++.-.++.+.++|..+.+.+.++... ... ..+++|+ .++++...+.+.+.|..+.+.+..+.-- .
T Consensus 79 ----yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 79 ----YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp ----EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred ----EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 233345788999999999999988633 222 3344554 4556555556999999998887776532 1
Q ss_pred ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
..++.+.+. ++ ..+....++.|.+-|.++++.++++.+.
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence 136777777 66 4455556889999999999999998875
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.75 E-value=0.025 Score=51.95 Aligned_cols=208 Identities=8% Similarity=0.018 Sum_probs=117.8
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~ 297 (479)
.....++++++|+++++-..++.|..||.... ....+. .......++++++++++++....+ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999998888778899999998754 333332 234678999999998766554332 46666765544221
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC--------------CC-----------CCCC-eEEEEeCC
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS--------------AT-----------EESH-PVITGSHD 351 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~--------------~~-----------~~~~-~l~sgs~d 351 (479)
.. ..........+...+.+..+++....+.|..++.... .. .+.. ..++-+..
T Consensus 110 ~~-~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 110 LL-TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 188 (306)
T ss_dssp EE-ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred EE-eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence 10 0011111223333343333444445667766665421 00 0112 23444456
Q ss_pred CcEEEEECCC-Cee--EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE--eeecCCcceEEEEEEc---
Q psy8895 352 CTIRLWDLAA-GKS--LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI--QNLPGHNAIINSICVN--- 422 (479)
Q Consensus 352 ~~v~iwd~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~--- 422 (479)
+.|..+|+.. ++. ...+.. ......+++++++.++++.... .|.+++.. ++.. ..+........+++|.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 7888888764 221 111111 1234568899999888776644 59899864 6553 2333333457889998
Q ss_pred CCC-EEEEEeC
Q psy8895 423 NEG-VLVSGAD 432 (479)
Q Consensus 423 ~~~-~l~sg~~ 432 (479)
+++ .|+.+..
T Consensus 267 ~d~~~LyVt~~ 277 (306)
T 2p4o_A 267 GDCTAIYVVTN 277 (306)
T ss_dssp TTTTEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 675 5544443
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.75 E-value=0.022 Score=51.07 Aligned_cols=185 Identities=9% Similarity=0.004 Sum_probs=101.4
Q ss_pred cEEEEEeCCCeEEEEECCCCce-----EEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895 232 EWFATGSADKIIKVWDLATGKL-----KLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPGSMDSE 305 (479)
Q Consensus 232 ~~l~sgs~d~~i~iWd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~ 305 (479)
.+|+.+.. +.|+.+++..... ...+.........+++++++..|+.+ ..++.|..+|+......... ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CTTC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--ECCC
Confidence 34444443 3677777765432 11122122356789999976655544 45689999998654321111 0112
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC-
Q psy8895 306 SGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT- 383 (479)
Q Consensus 306 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~- 383 (479)
.....+++++.+..+..+. ..+.| .++++..................++++|+
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I-------------------------~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRI-------------------------EVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEE-------------------------EEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred CCccEEEEEecCCeEEEEECCCCEE-------------------------EEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence 3567788887655554332 23344 44444321111111111234588999995
Q ss_pred CcEEEEEcC---CcEEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCCCe
Q psy8895 384 LYMFASASP---DNIKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 384 ~~~l~s~s~---d~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~~~ 445 (479)
+.++++... +.|..++.... ....+ .........+++++++ . +++-...++|..+|..++.
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 666666544 34777776432 22222 2223457889999864 4 4566667899999987543
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.74 E-value=0.0029 Score=56.13 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=112.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES 342 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 342 (479)
....+.|+. +.+.++.+.++.|+.+|+++++..... .+...-...+++. +.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~------------------------ 106 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GE------------------------ 106 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SS------------------------
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CC------------------------
Confidence 457888874 556678888999999999877654322 1110000111111 11
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecC--Cc---ceE
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPG--HN---AII 416 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~--h~---~~v 416 (479)
...+..-.++.+.++|..+.+.+.++...... ..++ +++ .++++.+.+.+.++|..+.+.+.++.- +. ..+
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 11223345788999999999999998753322 3444 444 455555555699999999988877653 22 235
Q ss_pred EEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecC-----CCCCceEEeeehhhhc
Q psy8895 417 NSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG-----FPKPSVFFFFLAFSYL 473 (479)
Q Consensus 417 ~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 473 (479)
+.+.+. +| ..+....+..|.+-|.++|+.++.+.+..+.. .++...+.--+|+++.
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 666666 55 45555568899999999999999998874321 2223334455888875
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.73 E-value=0.005 Score=54.05 Aligned_cols=191 Identities=13% Similarity=0.040 Sum_probs=116.9
Q ss_pred EEEEecCCc--CEEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895 254 KLSLTGHVG--SVRGLTVSPRHPYLFSCGDD--RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329 (479)
Q Consensus 254 ~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 329 (479)
+.++ .|.. ....+.|++ +.+..+.+.+ ..|+.+|+++++...... .....--..++.. +..+
T Consensus 12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fgeGi~~~--~~~l--------- 77 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFGAGIVAW--RDRL--------- 77 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEE--TTEE---------
T ss_pred EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcceeEEEEe--CCEE---------
Confidence 3344 4643 567999987 5566666765 489999998776432210 0000000111111 1111
Q ss_pred EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee
Q psy8895 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409 (479)
Q Consensus 330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~ 409 (479)
....-.++.+.++|..+.+.+.++...... ..++.. ...++++-+.+.+.++|..+.+.+.++
T Consensus 78 ---------------y~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 78 ---------------IQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp ---------------EEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ---------------EEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 122345788999999999999998754332 344422 345666666667999999998887776
Q ss_pred cCC--c---ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecCC-----CCCceEEeeehhhhc-ccc
Q psy8895 410 PGH--N---AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGF-----PKPSVFFFFLAFSYL-NRV 476 (479)
Q Consensus 410 ~~h--~---~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~ 476 (479)
+-. . ..++.+.+. ++ ..+....+..|.+-|.++|+.+..+.+..+... ++...+.--+|+++. +|+
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 542 1 245666655 55 455555678999999999999999988754322 123334555888875 443
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.72 E-value=0.00057 Score=67.89 Aligned_cols=199 Identities=9% Similarity=0.093 Sum_probs=116.0
Q ss_pred ccEEEEEE-c-CCCcEEEEEeC------------------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy8895 220 GWVRCVAV-E-PGNEWFATGSA------------------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC 279 (479)
Q Consensus 220 ~~v~~~~~-~-~~g~~l~sgs~------------------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 279 (479)
.....+++ + |++++++.++. ++.+.+.|..+.+...++.--. .-..++++|+|+++++.
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 34667777 5 89999888852 4579999999998877765322 23567899999999887
Q ss_pred ECCC---------------cEEEEECCCCCcccCCCC-----------------------CCCCCCeEEEEEeCCCCEEE
Q psy8895 280 GDDR---------------TVKCWDLEYNKAPVQPGS-----------------------MDSESGIFSMTFDNSGSRLI 321 (479)
Q Consensus 280 ~~d~---------------~i~~wd~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~ 321 (479)
+.+. .+.+.|+.........+. ........++.++|+|+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v- 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL- 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEE-
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEE-
Confidence 7553 244444321100000000 0000011223444444433
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe------------eEEEEccCCCceEEEEEeCCCcEEEE
Q psy8895 322 TTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK------------SLCTLTNHKKSVRSVALHPTLYMFAS 389 (479)
Q Consensus 322 ~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~------------~~~~~~~h~~~v~~i~~~~~~~~l~s 389 (479)
++++..+.+|.++|+.+.+ .+.+++- ...-+.++|+|++..+++
T Consensus 292 -----------------------~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t 347 (595)
T 1fwx_A 292 -----------------------CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTS 347 (595)
T ss_dssp -----------------------EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEE
T ss_pred -----------------------EEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEE
Confidence 3344456677777777542 2333332 234688999999976777
Q ss_pred EcCCc-EEEEeCCC----------CeEEeeecCCcceE-EE----EEEcCCC-EEEEEe---CCCcE----------EEE
Q psy8895 390 ASPDN-IKQWKCPE----------GKFIQNLPGHNAII-NS----ICVNNEG-VLVSGA---DNGTM----------CFW 439 (479)
Q Consensus 390 ~s~d~-i~~w~~~~----------~~~~~~~~~h~~~v-~~----l~~~~~~-~l~sg~---~dg~i----------~lW 439 (479)
.-.++ +..||+.+ .+.+.++..|-.+- .+ ..+++|| +|++.. .|+-+ .++
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~ 427 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI 427 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence 77665 88999876 55677776664321 11 1347888 666543 24331 889
Q ss_pred ecCCC
Q psy8895 440 DWRTG 444 (479)
Q Consensus 440 d~~~~ 444 (479)
|+..+
T Consensus 428 dis~~ 432 (595)
T 1fwx_A 428 DISGD 432 (595)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 99544
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.66 E-value=0.044 Score=52.23 Aligned_cols=208 Identities=11% Similarity=0.002 Sum_probs=119.4
Q ss_pred CccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcc
Q psy8895 219 LGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAP 296 (479)
Q Consensus 219 ~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~ 296 (479)
......++|++.+ .++++-...+.|..+++..+.....+.........+++++.+..| ++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457889999754 455565567889999988765443333223345678888755554 44455678888877543221
Q ss_pred cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceE
Q psy8895 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVR 376 (479)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~ 376 (479)
... .........++++|.+..+..+.... .+.|...++............-..-+
T Consensus 195 ~l~--~~~l~~P~giavdp~~g~ly~td~~~-----------------------~~~I~r~~~dG~~~~~~~~~~~~~Pn 249 (386)
T 3v65_B 195 VLL--WQSLEKPRAIALHPMEGTIYWTDWGN-----------------------TPRIEASSMDGSGRRIIADTHLFWPN 249 (386)
T ss_dssp EEE--CSSCSCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred Eee--cCCCCCCcEEEEEcCCCeEEEeccCC-----------------------CCEEEEEeCCCCCcEEEEECCCCCee
Confidence 111 11123456778887665554432211 13344444432221111112223457
Q ss_pred EEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 377 SVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 377 ~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.|+++|+ +.++.+-+.. .|..++.........+.........+++..+..+++-...+.|..+|..+|...+.+.
T Consensus 250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 8999975 4555555444 4888887643333333333344567777555577777788899999977887666554
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.62 E-value=0.045 Score=51.36 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=118.8
Q ss_pred ccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~ 297 (479)
.....++|++.++ ++++-...+.|..+++..+.....+.........+++++.+..| ++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4578899997554 45555567889999988765443333223345688998755544 455566789999986433211
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCceE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSVR 376 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v~ 376 (479)
.. .........++++|.+..+..+.... .+.|...++.... ...+ ...-..-+
T Consensus 153 l~--~~~l~~P~~iavdp~~g~ly~td~~~-----------------------~~~I~r~~~dG~~-~~~~~~~~~~~Pn 206 (349)
T 3v64_C 153 LL--WQSLEKPRAIALHPMEGTIYWTDWGN-----------------------TPRIEASSMDGSG-RRIIADTHLFWPN 206 (349)
T ss_dssp EE--CTTCSCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCS-CEESCCSSCSCEE
T ss_pred EE--eCCCCCcceEEEecCcCeEEEeccCC-----------------------CCEEEEEeCCCCC-cEEEEECCCCCcc
Confidence 11 11223456788887655554332211 1334444443221 1122 11223457
Q ss_pred EEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 377 SVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 377 ~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
.|+++|+ +.++.+-+.. .|..++.........+.........+++..+..+++-...+.|...|..+|...+.+.
T Consensus 207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 8999975 4555555444 4888887643333223333344567777554466777778889988877787665554
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.61 E-value=0.017 Score=60.42 Aligned_cols=68 Identities=9% Similarity=-0.094 Sum_probs=40.7
Q ss_pred EEcCCCcEEEEEeCC-----CeEEEEECCCCce--EEEEe-cCCcCEEEEEEcCCCCEEEEEE---CCCcEEEEECCCC
Q psy8895 226 AVEPGNEWFATGSAD-----KIIKVWDLATGKL--KLSLT-GHVGSVRGLTVSPRHPYLFSCG---DDRTVKCWDLEYN 293 (479)
Q Consensus 226 ~~~~~g~~l~sgs~d-----~~i~iWd~~~~~~--~~~~~-~h~~~v~~v~~~~~~~~l~s~~---~d~~i~~wd~~~~ 293 (479)
+|+|||+.|+..+.| ..|.++++.++.. ...+. ........+.++||+++|+..+ ....|.++|+...
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 455666555444443 2566777766532 22333 2233466789999999887654 2346788888754
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.071 Score=56.04 Aligned_cols=222 Identities=12% Similarity=0.059 Sum_probs=136.0
Q ss_pred CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe--------------cCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT--------------GHVGSVRGLTVSPRHPYLFSCGDDRT 284 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--------------~h~~~v~~v~~~~~~~~l~s~~~d~~ 284 (479)
...|.++...++|.+.+ |+..+-|.++|..++....... -....|.++...++|.+. .|..++-
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 35688998888776544 5554557788987765432111 123579999999888654 4566677
Q ss_pred EEEEECCCCCcccCC-------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------C---------
Q psy8895 285 VKCWDLEYNKAPVQP-------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------T--------- 339 (479)
Q Consensus 285 i~~wd~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------~--------- 339 (479)
|..++.......... ........|.++..++++.. -.|+.++-+..++..... .
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 888887644321110 01112346888888877664 455544556666543210 0
Q ss_pred -CCCCeEEEEeCCCcEEEEECCCCeeEEEEc---cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCC---
Q psy8895 340 -EESHPVITGSHDCTIRLWDLAAGKSLCTLT---NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGH--- 412 (479)
Q Consensus 340 -~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h--- 412 (479)
.....+-.|+.++-+..+|..+++.. .+. .....|.++...+++.+.++.. +.+..++..+++........
T Consensus 414 ~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 491 (781)
T 3v9f_A 414 KDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ 491 (781)
T ss_dssp ECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred ECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence 01223556777677888887766432 222 1345799999999998888776 67999998776654332222
Q ss_pred --cceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895 413 --NAIINSICVNNEGVLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 413 --~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~ 445 (479)
...|.+++..+++.|-.|..++-+..||.+++.
T Consensus 492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 357899999988866556664446778877653
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.12 Score=54.28 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=136.2
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-------GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
..|.++...++|.+.+.. .+ -+.+||..+++...... -....|.++...+++.+. .|...+-|.++|...
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCC
Confidence 468899888888766544 44 58889987765432111 123569999998888654 455545688888765
Q ss_pred CCcccCCC------------CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------C--C-----
Q psy8895 293 NKAPVQPG------------SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------T--E----- 340 (479)
Q Consensus 293 ~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~--~----- 340 (479)
........ ..-....|.++..+.++. +-.|+.++-|..++..... . .
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 43211100 011235688888888776 4556655556666543211 0 0
Q ss_pred -----CCCeEEEEeCCCcEEEEECCCCeeEEEE---ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec--
Q psy8895 341 -----ESHPVITGSHDCTIRLWDLAAGKSLCTL---TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP-- 410 (479)
Q Consensus 341 -----~~~~l~sgs~d~~v~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~-- 410 (479)
....+-.|+.++-+..+|..+++...-. ......|.++...+++.+.++...+.+..++..+++......
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTT
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCC
Confidence 1123556676677888887654322110 123467999999989998887666679999987776543322
Q ss_pred CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895 411 GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 411 ~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~ 445 (479)
-....|.+++..+++.|-.|.. +-+..+|.+++.
T Consensus 447 ~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence 1346789999998886655666 557888887764
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.46 E-value=0.053 Score=48.11 Aligned_cols=209 Identities=10% Similarity=0.131 Sum_probs=125.0
Q ss_pred EecCCCccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~ 290 (479)
.+.|=.+.+..++++|+++.| +....++.|...|.. ++.+..+. +. .....+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 455666789999999976655 456778888888987 77766653 22 35678889898887777656778888887
Q ss_pred CCCCcc-----c--CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895 291 EYNKAP-----V--QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK 363 (479)
Q Consensus 291 ~~~~~~-----~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~ 363 (479)
...... . .......+.....++++|.++.+.++.......+|..+.. .. . ..+.+-+...
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~~-~---------~~l~i~~~~~-- 165 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-LS-S---------NELHISKDKA-- 165 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-TC-S---------SCCEEEECHH--
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-cc-C---------Cceeeecchh--
Confidence 543321 0 0111234556789999999887777665555455443210 00 0 0111111000
Q ss_pred eEEEEccCCCceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeee--c-CCc------ceEEEEEEcCCCEEEEEeC
Q psy8895 364 SLCTLTNHKKSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKFIQNL--P-GHN------AIINSICVNNEGVLVSGAD 432 (479)
Q Consensus 364 ~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~--~-~h~------~~v~~l~~~~~~~l~sg~~ 432 (479)
+ .-..+-..+.+++++|.. .+++.+.... +...|.. |+.+..+ . +.. ..-..++|.++|.|...++
T Consensus 166 -~-~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE 242 (255)
T 3qqz_A 166 -L-QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 242 (255)
T ss_dssp -H-HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred -h-ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence 0 000122346889999965 4444444444 7788864 5554443 3 211 2567899999996555577
Q ss_pred CCcEEEEe
Q psy8895 433 NGTMCFWD 440 (479)
Q Consensus 433 dg~i~lWd 440 (479)
-..+..+.
T Consensus 243 ~n~~y~f~ 250 (255)
T 3qqz_A 243 PNRFYRFT 250 (255)
T ss_dssp TTEEEEEE
T ss_pred CceEEEEE
Confidence 66555554
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.46 E-value=0.011 Score=59.54 Aligned_cols=168 Identities=15% Similarity=0.037 Sum_probs=97.7
Q ss_pred eEEEEECCCCceEEEEecC--C--------cCEEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcccCCCCCC-----
Q psy8895 242 IIKVWDLATGKLKLSLTGH--V--------GSVRGLTVSPRHP---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD----- 303 (479)
Q Consensus 242 ~i~iWd~~~~~~~~~~~~h--~--------~~v~~v~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----- 303 (479)
.|..+|.++|+.+..++.. . .++. +....+|+ .++.++.+|.+.++|.++++.........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 6999999999998887632 1 2222 22234663 56678889999999988776532210000
Q ss_pred -----CC-CCe--------------------------EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE------
Q psy8895 304 -----SE-SGI--------------------------FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV------ 345 (479)
Q Consensus 304 -----~~-~~i--------------------------~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l------ 345 (479)
.. ..+ ..++++|+...+.+...+....++............+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 00 000 1356777777777776654444443322111111111
Q ss_pred EEE------eCCCcEEEEECCCCeeEEEEccCCCceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeEEeeecC
Q psy8895 346 ITG------SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL-HPTLYMFASASPDNIKQWKCPEGKFIQNLPG 411 (479)
Q Consensus 346 ~sg------s~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~ 411 (479)
..+ ..++.+..||+.+++.+.+++... .+....+ ..++.+++...++.+..+|..+|+.+.+++.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 000 246899999999999988875322 2222222 2345566644455699999999999877653
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.39 E-value=0.042 Score=50.99 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=101.2
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeE-EEEECCCCc-eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKII-KVWDLATGK-LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i-~iWd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 297 (479)
+.+..+.+.+++..++.+. ++.| +-.| .|+ .......+...+..+++.+++.+++.+...+..+.+|-. +.. .
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t-W 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA-W 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS-C
T ss_pred CCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc-e
Confidence 3456677766677666654 5543 2222 232 222334455678999999998877665444444444421 110 0
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc----cCCC
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT----NHKK 373 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~----~h~~ 373 (479)
..........+..+.+.+++..++. +.++. +++.+...++....+. .+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~-------------------------~~~s~~D~G~tW~~~~~~~~~~~~ 250 (327)
T 2xbg_A 197 EPHNRTTSRRLHNMGFTPDGRLWMI-VNGGK-------------------------IAFSDPDNSENWGELLSPLRRNSV 250 (327)
T ss_dssp EEEECCSSSCEEEEEECTTSCEEEE-ETTTE-------------------------EEEEETTEEEEECCCBCTTSSCCS
T ss_pred eECCCCCCCccceeEECCCCCEEEE-eCCce-------------------------EEEecCCCCCeeEeccCCcccCCc
Confidence 0000112345667777666654432 23333 3332211111111111 1223
Q ss_pred ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec---CCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895 374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP---GHNAIINSICVNNEGVLVSGADNGTMCFWD 440 (479)
Q Consensus 374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~---~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd 440 (479)
.+.++.+.+++.+++.+..+.+ .+..+.|+....+. .....+..+.+.+++.++.++.+|.|.-++
T Consensus 251 ~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred ceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 5788999888888888876666 44455555444333 233456777777677777788899887665
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.085 Score=48.69 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=117.6
Q ss_pred ccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcc
Q psy8895 220 GWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAP 296 (479)
Q Consensus 220 ~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~ 296 (479)
.....+.|.+. +.++.+-...+.|..+++..+.. ...+.........+++.+.+..| ++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 34668889875 55556666678899999876632 11222222345678888755444 45456678999998643321
Q ss_pred cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCce
Q psy8895 297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSV 375 (479)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v 375 (479)
... .........++++|.+..+..+... ..+.|...++.... ...+ ...-..-
T Consensus 115 ~l~--~~~~~~P~giavdp~~g~ly~td~~-----------------------~~~~I~r~~~dG~~-~~~~~~~~l~~P 168 (318)
T 3sov_A 115 VLF--WQELDQPRAIALDPSSGFMYWTDWG-----------------------EVPKIERAGMDGSS-RFIIINSEIYWP 168 (318)
T ss_dssp EEE--CSSCSSEEEEEEEGGGTEEEEEECS-----------------------SSCEEEEEETTSCS-CEEEECSSCSCE
T ss_pred EEE--eCCCCCccEEEEeCCCCEEEEEecC-----------------------CCCEEEEEEcCCCC-eEEEEECCCCCc
Confidence 111 0122345677888765555443311 11233333333211 1111 1112345
Q ss_pred EEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895 376 RSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451 (479)
Q Consensus 376 ~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~ 451 (479)
+.|+++|+ +.++.+-+.. .|..++...........+.......+++..+..+.+-...+.|..+|..+|...+.+.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 78999985 4555555444 4888887643332222333345567777766677777788999999988887665554
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.38 E-value=0.0057 Score=63.10 Aligned_cols=188 Identities=11% Similarity=0.110 Sum_probs=107.3
Q ss_pred EEEEEcCCCcEEEEEeCCC-------------------eEEEEECCCCceEEEEec--CC-------cCEEEEEEcCCCC
Q psy8895 223 RCVAVEPGNEWFATGSADK-------------------IIKVWDLATGKLKLSLTG--HV-------GSVRGLTVSPRHP 274 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs~d~-------------------~i~iWd~~~~~~~~~~~~--h~-------~~v~~v~~~~~~~ 274 (479)
..++++|++..++.++.++ .|..+|.++|+.+..++. |. .+.....+..+++
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 3467888888888887765 499999999999988764 32 2233233334564
Q ss_pred ---EEEEEECCCcEEEEECCCCCcccCCCCCC---------CCCC-------------------------eEEEEEeCCC
Q psy8895 275 ---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD---------SESG-------------------------IFSMTFDNSG 317 (479)
Q Consensus 275 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~-------------------------i~~~~~~~~~ 317 (479)
.++.++.+|.+.++|.++++......... .... -..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 57888999999999998876541100000 0000 0014556655
Q ss_pred CEEEEEeCCCeEEEEeCC-CCC------CCC----CCeEE-EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe-CCC
Q psy8895 318 SRLITTEADKTVKLYKED-DSA------TEE----SHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH-PTL 384 (479)
Q Consensus 318 ~~l~~~~~d~~i~~~~~~-~~~------~~~----~~~l~-sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~-~~~ 384 (479)
..+.+...+-.... ... ... ... ....+ ....++.|..||+.+++.+.+.+.+.. .....+. .++
T Consensus 393 g~~yv~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg 470 (668)
T 1kv9_A 393 GLVYIPYQEVPGVY-RNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGN 470 (668)
T ss_dssp TEEEEEEEECCEEE-CCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTT
T ss_pred CEEEEeccccceEe-eeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCC
Confidence 55554333221111 111 000 000 00011 233568999999999999888764332 2222222 334
Q ss_pred cEEEEEcCCcEEEEeCCCCeEEeeecCC
Q psy8895 385 YMFASASPDNIKQWKCPEGKFIQNLPGH 412 (479)
Q Consensus 385 ~~l~s~s~d~i~~w~~~~~~~~~~~~~h 412 (479)
.+|++..++.++.||..+|+.+..+...
T Consensus 471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 471 LVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEECCcccchhhhhhcChhheEecCC
Confidence 4454433446999999999998776543
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.35 E-value=0.02 Score=57.93 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=109.6
Q ss_pred EEEEcCCCcEEEEEeC--------------------C----CeEEEEECCCCceEEEEec--CC--------cCEEEEEE
Q psy8895 224 CVAVEPGNEWFATGSA--------------------D----KIIKVWDLATGKLKLSLTG--HV--------GSVRGLTV 269 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~--------------------d----~~i~iWd~~~~~~~~~~~~--h~--------~~v~~v~~ 269 (479)
.++++|+..+++.+.. | +.|..+|.++|+.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567777777665552 2 5899999999999988753 32 1222 222
Q ss_pred c-CCCC---EEEEEECCCcEEEEECCCCCcccCCCCCC-------------------------------CCCC-------
Q psy8895 270 S-PRHP---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD-------------------------------SESG------- 307 (479)
Q Consensus 270 ~-~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------------------------------~~~~------- 307 (479)
. .+|+ .++.++.+|.+.++|.++++......... ....
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4664 67788999999999988776432110000 0000
Q ss_pred -----eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE----EE----EeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895 308 -----IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV----IT----GSHDCTIRLWDLAAGKSLCTLTNHKKS 374 (479)
Q Consensus 308 -----i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l----~s----gs~d~~v~iwd~~~~~~~~~~~~h~~~ 374 (479)
...++++|....+.+...+-...++............+ .. ...++.+..||+.+++.+.+.+.+...
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 01235555555555544433333333221111111000 00 124689999999999998876543221
Q ss_pred eEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceE-EEEEEcCCC
Q psy8895 375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAII-NSICVNNEG 425 (479)
Q Consensus 375 v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v-~~l~~~~~~ 425 (479)
........++.+|++..++.++.+|..+|+.+-+++...+.. .-+.+..+|
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G 540 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECC
Confidence 111111234555554444469999999999987665433221 123444566
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.28 E-value=0.14 Score=49.00 Aligned_cols=209 Identities=15% Similarity=0.071 Sum_probs=118.0
Q ss_pred CCccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895 218 HLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE 291 (479)
Q Consensus 218 h~~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~ 291 (479)
....+..++|++.++. +++-...+.|..+++... .....+.........+++.+.+..|+ +-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 4567789999985554 455556788988888652 22233333344678899988544444 44566788888876
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH 371 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h 371 (479)
........ .........++++|.+..+..+... ..+.|...++........+...
T Consensus 190 g~~~~~l~--~~~~~~P~~iavdp~~g~ly~td~~-----------------------~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 190 GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWG-----------------------TPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp TCSEEEEE--ECSSCCEEEEEEETTTTEEEEEECS-----------------------SSCCEEEEETTSCSCEEEECSS
T ss_pred CCceEEEE--eCCCCCcceEEEecccCeEEEEeCC-----------------------CCCEEEEEeCCCCccEEEEECC
Confidence 44321111 0122345677788765555443211 0123444444322221122222
Q ss_pred CCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecC--CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895 372 KKSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 372 ~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
-...+.|+++++. .++.+-+.. .|...+............ .-.....+++..+..+.+-...+.|..+|..+|..+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 2456889999765 454554433 488888754433222222 223455677766667777778889999998888766
Q ss_pred EEEE
Q psy8895 448 QRLQ 451 (479)
Q Consensus 448 ~~~~ 451 (479)
..+.
T Consensus 325 ~~i~ 328 (400)
T 3p5b_L 325 NLLA 328 (400)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6553
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.23 E-value=0.036 Score=56.05 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=105.5
Q ss_pred EEEcCCCcEEEEEeCC----------------CeEEEEECCCCceEEEEecCC----------cCEEEEEEc-CCC---C
Q psy8895 225 VAVEPGNEWFATGSAD----------------KIIKVWDLATGKLKLSLTGHV----------GSVRGLTVS-PRH---P 274 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d----------------~~i~iWd~~~~~~~~~~~~h~----------~~v~~v~~~-~~~---~ 274 (479)
.++.++..+++.+..+ +.|..+|.++|+.+..++... .++. +... .+| +
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 4555666666666554 379999999999988876432 1222 2222 466 4
Q ss_pred EEEEEECCCcEEEEECCCCCcccCCCCCC----------CCCC---------------------------eEEEEEeCCC
Q psy8895 275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMD----------SESG---------------------------IFSMTFDNSG 317 (479)
Q Consensus 275 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----------~~~~---------------------------i~~~~~~~~~ 317 (479)
.++.++.+|.+.++|.++++......... ..+. --.++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67778899999999998776542211000 0000 0135677877
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCe------EEEE--e------CCCcEEEEECCCCeeEEEEccCCCceE-EEEEeC
Q psy8895 318 SRLITTEADKTVKLYKEDDSATEESHP------VITG--S------HDCTIRLWDLAAGKSLCTLTNHKKSVR-SVALHP 382 (479)
Q Consensus 318 ~~l~~~~~d~~i~~~~~~~~~~~~~~~------l~sg--s------~d~~v~iwd~~~~~~~~~~~~h~~~v~-~i~~~~ 382 (479)
..+++...+....+............. +..+ + .++.+..||+.+++.+.+.+.. .+.. ......
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~ta 483 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATA 483 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEET
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEec
Confidence 777766554333322221111111111 1110 1 4589999999999988876422 1111 111123
Q ss_pred CCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895 383 TLYMFASASPDNIKQWKCPEGKFIQNLP 410 (479)
Q Consensus 383 ~~~~l~s~s~d~i~~w~~~~~~~~~~~~ 410 (479)
.+.+|++..++.++.+|..+|+.+-+.+
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 4555554444569999999999887654
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.17 E-value=0.15 Score=47.02 Aligned_cols=206 Identities=16% Similarity=0.075 Sum_probs=114.2
Q ss_pred ccEEEEEEcCCC-cEEEEEeCCCeEEEEECCC----CceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCC
Q psy8895 220 GWVRCVAVEPGN-EWFATGSADKIIKVWDLAT----GKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 220 ~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~ 293 (479)
.....++|++.+ .++++-...+.|..+++.. ......+.........+++++.+..| ++-...+.|.+.|++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999865 4555656678999999876 22222233222345788998755544 45456788999998643
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCC
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHK 372 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~ 372 (479)
...... .........++++|.+..+..+.... .+.|...++.. +....+ ...-
T Consensus 110 ~~~~~~--~~~~~~P~~iavdp~~g~ly~~d~~~-----------------------~~~I~~~~~dG-~~~~~~~~~~~ 163 (316)
T 1ijq_A 110 KRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGT-----------------------PAKIKKGGLNG-VDIYSLVTENI 163 (316)
T ss_dssp SEEEEE--ECTTCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTS-CCEEEEECSSC
T ss_pred ceEEEE--ECCCCCcceEEeCCCCCEEEEEccCC-----------------------CCeEEEEcCCC-CCeEEEEECCC
Confidence 221111 01123456777887665554433210 12333334332 111222 1122
Q ss_pred CceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeec--CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895 373 KSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLP--GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448 (479)
Q Consensus 373 ~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~ 448 (479)
...+.+++++++ .++.+-+.. .|...+........... ........+++..+..+++-...++|..+|..+|..++
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceE
Confidence 346789999864 455555444 58888886432221111 12234566777654466777778899999988887665
Q ss_pred EEE
Q psy8895 449 RLQ 451 (479)
Q Consensus 449 ~~~ 451 (479)
.+.
T Consensus 244 ~i~ 246 (316)
T 1ijq_A 244 LLA 246 (316)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.12 E-value=0.17 Score=46.88 Aligned_cols=200 Identities=15% Similarity=0.246 Sum_probs=110.0
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC----C---EEE-EEEC--CCcEEEEECC--CCCcc
Q psy8895 229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH----P---YLF-SCGD--DRTVKCWDLE--YNKAP 296 (479)
Q Consensus 229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~----~---~l~-s~~~--d~~i~~wd~~--~~~~~ 296 (479)
|...+++...+.+-+.++|+ +|+.+..+.. +.++.+.+-|+- + .++ +.-. +++|.+|++. +...
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l- 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL- 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-
Confidence 34556777777889999999 7888877753 567777776632 1 222 3334 6899999763 3221
Q ss_pred cCCCCC--C--CC-CCeEEEEE--eCC-CC-EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE
Q psy8895 297 VQPGSM--D--SE-SGIFSMTF--DNS-GS-RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT 367 (479)
Q Consensus 297 ~~~~~~--~--~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~ 367 (479)
...... . .. ..+.-+++ ++. +. ++++...++.+..|++. ...+++ .+.+.+++
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~------------~~~~g~------~~~~lVR~ 175 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK------------ADKNGY------ISGKKVRA 175 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE------------ECTTSC------EEEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE------------eCCCCc------ccceEEEE
Confidence 111000 0 00 11222222 442 22 34444444444444321 111111 12356667
Q ss_pred EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCC-----CCeEEeeec-CC-cceEEEEEEc--CC--CEEEEEe-CCC
Q psy8895 368 LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCP-----EGKFIQNLP-GH-NAIINSICVN--NE--GVLVSGA-DNG 434 (479)
Q Consensus 368 ~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~-----~~~~~~~~~-~h-~~~v~~l~~~--~~--~~l~sg~-~dg 434 (479)
+.- .+.+..+...+....|..+.++ .|..++.. +++.+.... ++ ...+..|++- ++ ++|++.+ .+.
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 653 3568888998876655556555 45555543 345555443 22 2367888773 33 4554444 678
Q ss_pred cEEEEecC-CCeEEEEEE
Q psy8895 435 TMCFWDWR-TGYNFQRLQ 451 (479)
Q Consensus 435 ~i~lWd~~-~~~~~~~~~ 451 (479)
+..+||.+ +.+.+.+++
T Consensus 255 s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 255 SYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEESSTTCCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEE
Confidence 99999997 666666664
No 274
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.79 E-value=0.18 Score=46.44 Aligned_cols=183 Identities=9% Similarity=0.092 Sum_probs=97.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC--CCC---------------CCCCCeEEEEEeCCCCEEEEEeCC
Q psy8895 264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP--GSM---------------DSESGIFSMTFDNSGSRLITTEAD 326 (479)
Q Consensus 264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d 326 (479)
..++++++++..++++..++.|..||.......... ... ........++++++...+.++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 456788888886777778888999987653321100 000 001246788888733455555545
Q ss_pred CeEEEEeCCCCCC------CC-----CCeEEEEeC-CCcEE---------------------------EEECCCCeeEEE
Q psy8895 327 KTVKLYKEDDSAT------EE-----SHPVITGSH-DCTIR---------------------------LWDLAAGKSLCT 367 (479)
Q Consensus 327 ~~i~~~~~~~~~~------~~-----~~~l~sgs~-d~~v~---------------------------iwd~~~~~~~~~ 367 (479)
+.+..++...... .. ...-+.... ||.+. .+|..+++....
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 5566666542110 00 000122223 44444 444433332111
Q ss_pred EccCCCceEEEEEeCCCc-EEEEEcC-CcEEEEeCCCC---e--EEeeecCCcceEEEEEEcCCC-EEEEEeC-------
Q psy8895 368 LTNHKKSVRSVALHPTLY-MFASASP-DNIKQWKCPEG---K--FIQNLPGHNAIINSICVNNEG-VLVSGAD------- 432 (479)
Q Consensus 368 ~~~h~~~v~~i~~~~~~~-~l~s~s~-d~i~~w~~~~~---~--~~~~~~~h~~~v~~l~~~~~~-~l~sg~~------- 432 (479)
... ......|+++|++. ++++.+. +.|..++.... + ....+. + ...++++++| ++++...
T Consensus 181 ~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 181 LKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred ccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEEEEecCccccccc
Confidence 111 12345789999986 5555444 46888887642 2 122222 2 6778999988 4444333
Q ss_pred ---CCcEEEEecCCCeEEEEEEE
Q psy8895 433 ---NGTMCFWDWRTGYNFQRLQV 452 (479)
Q Consensus 433 ---dg~i~lWd~~~~~~~~~~~~ 452 (479)
.+.|..+|. .|+.+..+..
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEC
T ss_pred CCCccEEEEECC-CCCEEEEEEC
Confidence 466888886 4776666554
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.78 E-value=0.67 Score=48.42 Aligned_cols=208 Identities=16% Similarity=0.072 Sum_probs=116.5
Q ss_pred CCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895 218 HLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE 291 (479)
Q Consensus 218 h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~ 291 (479)
....+..+++.+. +.++++-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 3456788999885 445556666688888888753 22233332334567899998776555 44566789999986
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH 371 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h 371 (479)
........ .........++++|....|+.+.... .+.|...++........+...
T Consensus 502 G~~~~~l~--~~~l~~P~gIaVDp~~g~LYwtD~g~-----------------------~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 502 GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGT-----------------------PAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp SSSEEEEE--ECTTCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCCEEEEECSS
T ss_pred CCeEEEEE--eCCCCCcceEEEecCCCCEEEecCCC-----------------------CCeEEEEecCCCceEEEEeCC
Confidence 43321111 01223466788887655554432110 123444444322222222222
Q ss_pred CCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecC--CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895 372 KKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 372 ~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
-...+.|++++. +.++.+-... .|...+.....+...+.. .-.....|++..+.++++-...+.|...|..+|..+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence 245688999975 4455554433 488888754433333322 122345667665556666667788888888888766
Q ss_pred EEE
Q psy8895 448 QRL 450 (479)
Q Consensus 448 ~~~ 450 (479)
..+
T Consensus 637 ~~l 639 (791)
T 3m0c_C 637 NLL 639 (791)
T ss_dssp EEE
T ss_pred EEe
Confidence 555
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.68 E-value=0.035 Score=57.05 Aligned_cols=210 Identities=9% Similarity=0.051 Sum_probs=110.4
Q ss_pred cEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEE-CC-----CcEEEEECCC
Q psy8895 221 WVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCG-DD-----RTVKCWDLEY 292 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~-~d-----~~i~~wd~~~ 292 (479)
...++++..+|+.++.|+. +..+.+||..+++....-..+... -.++++.+++++++.|| .+ ..+.+||+++
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3345677789999999984 468999999887554322222221 23456667888888888 44 5799999876
Q ss_pred CCcccCC----CCCCCCCCeEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCCC---------------------
Q psy8895 293 NKAPVQP----GSMDSESGIFSMTFDNSGSRLITTEA---------DKTVKLYKEDDSA--------------------- 338 (479)
Q Consensus 293 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~~~~~~~~--------------------- 338 (479)
....... ........- ..+..++...+.++. ...+..|+.....
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~--~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQ--GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTT--GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CcceeCCCcccccccccccc--ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 5422110 000000000 000111222222222 2345556543221
Q ss_pred ------CCCCCeEEEEeCCC-----------cEEEEECCCCeeEEEE--ccCCCc-eEEEEEeCCCcEEEEEcC------
Q psy8895 339 ------TEESHPVITGSHDC-----------TIRLWDLAAGKSLCTL--TNHKKS-VRSVALHPTLYMFASASP------ 392 (479)
Q Consensus 339 ------~~~~~~l~sgs~d~-----------~v~iwd~~~~~~~~~~--~~h~~~-v~~i~~~~~~~~l~s~s~------ 392 (479)
......++.|+.++ .+.+||..+.+-.... ..+... -.++...|++++++.++.
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 01234566666432 5777887765433222 112222 234566788888888763
Q ss_pred ------CcEEEEeCCCCeEEe--eecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895 393 ------DNIKQWKCPEGKFIQ--NLPGHNAIINSICVNNEG-VLVSGAD 432 (479)
Q Consensus 393 ------d~i~~w~~~~~~~~~--~~~~h~~~v~~l~~~~~~-~l~sg~~ 432 (479)
..+.+||..+.+-.. .+...+....+..+.+++ +++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 237889987655322 222222222334456777 7777774
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.55 E-value=0.57 Score=45.15 Aligned_cols=216 Identities=10% Similarity=0.092 Sum_probs=115.5
Q ss_pred EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC----cEEEEECCCCCc
Q psy8895 222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR----TVKCWDLEYNKA 295 (479)
Q Consensus 222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~----~i~~wd~~~~~~ 295 (479)
-..++++| ++..|+.+...+.|+.+|+.++....... .......+++++++.+|+.+.. ++ .+...+... ..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence 35788987 35556555555889999998776544333 3445789999999996655543 22 233344321 11
Q ss_pred ccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC------------------CCCC-eEEEEeCCCcEE
Q psy8895 296 PVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSAT------------------EESH-PVITGSHDCTIR 355 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~-~l~sgs~d~~v~ 355 (479)
.... ..........++++| ++..+++-...+.|..++.+.... ++.. +.++-...+.|.
T Consensus 217 ~~~~-~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVIT-ELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEE-EEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeee-eeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1000 000112234577888 666666666777888887653211 1223 333444566777
Q ss_pred EEECCC--Cee--EEEEccC---C------------CceE-EEEEe--------CCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895 356 LWDLAA--GKS--LCTLTNH---K------------KSVR-SVALH--------PTLYMFASASPD-NIKQWKCPEGKFI 406 (479)
Q Consensus 356 iwd~~~--~~~--~~~~~~h---~------------~~v~-~i~~~--------~~~~~l~s~s~d-~i~~w~~~~~~~~ 406 (479)
.++... ++. ..++.+. . ..-. .+++. +++.++++-..+ .|+.++ .+|+..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~ 374 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT 374 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE
Confidence 766542 111 1122111 0 0112 45553 346666666544 488887 456543
Q ss_pred eeec-------C--C--------cceEEEEEEcC-CC-EEEEEeCCCcEEEEec
Q psy8895 407 QNLP-------G--H--------NAIINSICVNN-EG-VLVSGADNGTMCFWDW 441 (479)
Q Consensus 407 ~~~~-------~--h--------~~~v~~l~~~~-~~-~l~sg~~dg~i~lWd~ 441 (479)
.... + . -.....+++++ ++ ++++-....+|+..+.
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 2211 1 0 11467888888 56 4555555677777664
No 278
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.52 E-value=0.48 Score=43.45 Aligned_cols=198 Identities=11% Similarity=0.174 Sum_probs=113.6
Q ss_pred EEEEEcCCCcEEEEEe-CCCeEEEEECCCCceEEE-Eec----CCc--CEEEEEE---cCCCCEEEEEE-----------
Q psy8895 223 RCVAVEPGNEWFATGS-ADKIIKVWDLATGKLKLS-LTG----HVG--SVRGLTV---SPRHPYLFSCG----------- 280 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs-~d~~i~iWd~~~~~~~~~-~~~----h~~--~v~~v~~---~~~~~~l~s~~----------- 280 (479)
.+.+|.+....|..++ ..++|..||...+..... +.+ ... .+..+.+ .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4678877555555555 789999999986644332 222 111 3578999 68877776543
Q ss_pred --CCCcEEEEECC---CCCcccCCCC--C--C-------CCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCC
Q psy8895 281 --DDRTVKCWDLE---YNKAPVQPGS--M--D-------SESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESH 343 (479)
Q Consensus 281 --~d~~i~~wd~~---~~~~~~~~~~--~--~-------~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~ 343 (479)
.+..+..+|+. +++....... . + .......++.+++|+..++++.. +.|...+.
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p--------- 166 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA--------- 166 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT---------
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC---------
Confidence 26789999988 5544321100 0 0 11347789999999988887766 66544443
Q ss_pred eEEEEeCCCc-EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE--Eeeec--CC---cc
Q psy8895 344 PVITGSHDCT-IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF--IQNLP--GH---NA 414 (479)
Q Consensus 344 ~l~sgs~d~~-v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~--~~~~~--~h---~~ 414 (479)
||+ +..|.+.... .......+-|+++|++.+|+....+ .+..+|+.+... +. +. |. -.
T Consensus 167 -------dG~~~~~~~~~~~~-----~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~ 233 (334)
T 2p9w_A 167 -------DGKTVSTFAWESGN-----GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLS 233 (334)
T ss_dssp -------TSCCEEEEEECCCC-----SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCT
T ss_pred -------CCCEEeeeeecCCC-----cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCccccc
Confidence 332 4556543311 1112345789999999777666444 488888764322 11 11 21 11
Q ss_pred eEEE-EEEcCCC-E-EEEEeCCCcEEEEecC
Q psy8895 415 IINS-ICVNNEG-V-LVSGADNGTMCFWDWR 442 (479)
Q Consensus 415 ~v~~-l~~~~~~-~-l~sg~~dg~i~lWd~~ 442 (479)
.... +....++ . |++.+..+.+.+.+..
T Consensus 234 ~~dgilp~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 234 GTEKIVTVPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred CcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence 1233 2333344 3 6666666666666543
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.46 E-value=0.57 Score=43.68 Aligned_cols=194 Identities=13% Similarity=0.042 Sum_probs=103.3
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~ 300 (479)
..|.+..+++.++++ . ...|+..++........+... .....++|++....|+-. ...+.|..+++..........
T Consensus 36 ~~C~~~~~~~~ll~~-~-~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-N-RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SCEEESSSCCEEEEE-C-BSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CcccccccCceeEee-c-ccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 346555554433333 2 345777788766554444433 357899999765555544 466789999886543211100
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL 380 (479)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~ 380 (479)
........+++++.+..+..+. ...+.|.+.++........+...-...+.+++
T Consensus 113 --~~~~~p~glavd~~~g~ly~~d------------------------~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 113 --TGLESPGGLAVDWVHDKLYWTD------------------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp --SSCSCCCEEEEETTTTEEEEEE------------------------TTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred --CCCCCccEEEEecCCCeEEEEc------------------------CCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 0112234566665444433222 12234444444432221122222345688999
Q ss_pred eCC-CcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEEEcCC-CE-EEEEeCCCcEEEEecCCC
Q psy8895 381 HPT-LYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSICVNNE-GV-LVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 381 ~~~-~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~~-l~sg~~dg~i~lWd~~~~ 444 (479)
+|. +.++.+.... .|...+.............-...+.++++++ +. .++-+..++|..+|+...
T Consensus 167 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 167 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 984 5666665543 4777776433222222223345788999964 44 455556678988887643
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.23 E-value=0.84 Score=43.21 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=100.8
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCC
Q psy8895 223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~ 301 (479)
.|.+..+++ +|+.+. ...|+..++..+......... .....++|++....|+ +-...+.|..+++..........
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~- 155 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS- 155 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-
Confidence 355555533 443333 356888888776654444433 4578999997655555 44466789999886543211100
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH 381 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~ 381 (479)
........+++++.+..+..+. ...+.|.+.++........+...-...+.++++
T Consensus 156 -~~~~~p~glavd~~~g~lY~~d------------------------~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 156 -TGLESPGGLAVDWVHDKLYWTD------------------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp -SSCSCCCCEEEETTTTEEEEEE------------------------TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred -CCCCCccEEEEEeCCCeEEEEc------------------------CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 0111223455665444333222 122334444443222111222222456889999
Q ss_pred CC-CcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEEEcCC-C-EEEEEeCCCcEEEEecCC
Q psy8895 382 PT-LYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSICVNNE-G-VLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 382 ~~-~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~sg~~dg~i~lWd~~~ 443 (479)
|. +.++.+.... .|...+.............-...+.|+++++ + ++++-+..+.|..+|+..
T Consensus 211 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 85 5555555443 4666666433222222223345678899854 4 445555667888888764
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.13 E-value=0.42 Score=42.26 Aligned_cols=179 Identities=9% Similarity=0.064 Sum_probs=99.8
Q ss_pred EEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895 256 SLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE 334 (479)
Q Consensus 256 ~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~ 334 (479)
.+.+-...+..++++|++..|++ ...++.|...|.. ++..... ..........+++.+++.++++.-.++.+.+++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 44555667999999998766655 5667788888886 4332211 1122234666777777766565555556655553
Q ss_pred CCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCCc--EEEEeC-CCCeEEeee-
Q psy8895 335 DDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPDN--IKQWKC-PEGKFIQNL- 409 (479)
Q Consensus 335 ~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d~--i~~w~~-~~~~~~~~~- 409 (479)
.. ++.+.+-+...- .+.. .........++++|.+. ++++...+. +..|+- .....+..+
T Consensus 99 ~~--------------~~~i~~~~~~~~-~~~~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 99 TP--------------NSEVKILKKIKI-PLQE-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp CT--------------TCCEEEEEEEEC-CCSS-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEE
T ss_pred CC--------------CCeeeeeeeecc-cccc-ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeec
Confidence 32 222111000000 0000 11344578999999875 444444443 444541 111111111
Q ss_pred ------cCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 410 ------PGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 410 ------~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
..+...+.++++.|.. +++....+..+..+|.+ |..+..+.+.
T Consensus 163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~ 213 (255)
T 3qqz_A 163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT 213 (255)
T ss_dssp CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence 1123356888998765 66777788889999965 6677777766
No 282
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.98 E-value=1.4 Score=44.73 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=108.1
Q ss_pred CccEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc
Q psy8895 219 LGWVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKA 295 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~ 295 (479)
.+....++|++.++.|+ +-...+.|..+++..... ...+..-......+++++.+..|+ +-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34567899998665554 444567888888875532 223333234678999998665555 445678999999865432
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV 375 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v 375 (479)
..... ........++++|.+..+..+.... .+.|...++............-...
T Consensus 119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~-----------------------~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGE-----------------------VPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp EEEEC--SSCSCCCCEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSCEEEECSSCSSE
T ss_pred EEEEe--CCCCCCceEEEecCCCeEEEeccCC-----------------------CCEEEEEECCCCceEEEEeCCCCCC
Confidence 11110 1122345677777655554433210 1122222222111111111122346
Q ss_pred EEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895 376 RSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 376 ~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~ 449 (479)
+.|+++++ +.++.+-... .|...+...........+.......+++..+..+.+-...+.|...|..+|...+.
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEE
Confidence 78999986 4454444433 48888875443322222111222456666665566666778899999888765433
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.97 E-value=0.81 Score=44.13 Aligned_cols=194 Identities=14% Similarity=0.121 Sum_probs=98.4
Q ss_pred EEEEEEcCC---CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---Cc-EEEEECCCCC
Q psy8895 222 VRCVAVEPG---NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RT-VKCWDLEYNK 294 (479)
Q Consensus 222 v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~-i~~wd~~~~~ 294 (479)
-..++++|+ +.++++ ...+.|+.+|+.++..... .........+++++++.++++.... .. +...+.....
T Consensus 141 P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 357889984 554444 3338899999988766543 3344467899999999954443211 11 2222221100
Q ss_pred cccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-c-cC
Q psy8895 295 APVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-T-NH 371 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~-~h 371 (479)
.... ..........+++++ ++...++- ..++.|+.+|..++.....+ . +.
T Consensus 219 ~~~~--~~~~~~~P~giavd~~~G~lyv~d-------------------------~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 219 TERL--SLCNARGAKTCAVHPQNGKIYYTR-------------------------YHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CCEE--EEEECSSBCCCEECTTTCCEEECB-------------------------TTCSEEEEECTTTCCEEEEEEECSC
T ss_pred eccc--cccccCCCCEEEEeCCCCeEEEEE-------------------------CCCCEEEEEECCCCeEEEEEeccCC
Confidence 0000 000001122244444 23222222 23445666665544431221 1 11
Q ss_pred CCceEEEEEeCCCc-EEEEEcCC-cEEEEeCC--CCeEE--eeecC------C---------cceEEEEEE---------
Q psy8895 372 KKSVRSVALHPTLY-MFASASPD-NIKQWKCP--EGKFI--QNLPG------H---------NAIINSICV--------- 421 (479)
Q Consensus 372 ~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~--~~~~~--~~~~~------h---------~~~v~~l~~--------- 421 (479)
...-..++++|++. ++++-... .|..++.. ++... ..+.+ . -.....+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 12224699999987 55555544 48777654 33221 11111 1 113567888
Q ss_pred cCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895 422 NNEG-VLVSGADNGTMCFWDWRTGY 445 (479)
Q Consensus 422 ~~~~-~l~sg~~dg~i~lWd~~~~~ 445 (479)
.+++ ++++-....+|+.++. +|.
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECT-TSE
T ss_pred CCCCcEEEEECCCCEEEEECC-CCC
Confidence 6777 5556566788999984 564
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.93 E-value=1.3 Score=42.68 Aligned_cols=214 Identities=12% Similarity=0.148 Sum_probs=109.4
Q ss_pred CCCccEEEEEEcCCCcEEEEEeCC---Ce-EEEEECCCCce-EEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEEC
Q psy8895 217 GHLGWVRCVAVEPGNEWFATGSAD---KI-IKVWDLATGKL-KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDL 290 (479)
Q Consensus 217 ~h~~~v~~~~~~~~g~~l~sgs~d---~~-i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~ 290 (479)
+......+++++++|+++++-... .. +...+...+.. ...+. .-.....++++| ++.+.++-..++.|+.+|.
T Consensus 179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 344557899999999955554321 12 22222222211 11122 122346688999 6766656556778999988
Q ss_pred CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCCCC-CCeEEEEeC--CCcEEEEECCCCeeEE
Q psy8895 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSATEE-SHPVITGSH--DCTIRLWDLAAGKSLC 366 (479)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~-~~~l~sgs~--d~~v~iwd~~~~~~~~ 366 (479)
.++.................++++|+++.+..+ ...+.|..++.+...... ....+.|.. .+.. .+..
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~------dg~~-- 329 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWV------DGMG-- 329 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCB------CEEG--
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccC------CCcc--
Confidence 644331111011111223468999999855544 455677777654321111 112233321 1100 0000
Q ss_pred EEccCCCceEEEEE---------eCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------------------cceEEE
Q psy8895 367 TLTNHKKSVRSVAL---------HPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------------------NAIINS 418 (479)
Q Consensus 367 ~~~~h~~~v~~i~~---------~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------------------~~~v~~ 418 (479)
....-..-..+++ .+++.++++-..+ .|+.++. +|... ++.+. -.....
T Consensus 330 -~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~g 406 (433)
T 4hw6_A 330 -TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTS 406 (433)
T ss_dssp -GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEE
T ss_pred -cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcE
Confidence 0001123467888 6778887777665 4888874 56443 22221 113667
Q ss_pred EEEc-CCC-EEEEEeCCCcEEEEecC
Q psy8895 419 ICVN-NEG-VLVSGADNGTMCFWDWR 442 (479)
Q Consensus 419 l~~~-~~~-~l~sg~~dg~i~lWd~~ 442 (479)
++++ +++ ++++=....+|+..+++
T Consensus 407 iavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 407 IAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8888 667 44544556677776643
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.50 E-value=0.029 Score=58.03 Aligned_cols=205 Identities=15% Similarity=0.050 Sum_probs=104.3
Q ss_pred ccEEEEEEcCCCcEEEE-EeCCCeEEEEECCC----CceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q psy8895 220 GWVRCVAVEPGNEWFAT-GSADKIIKVWDLAT----GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYN 293 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~s-gs~d~~i~iWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~ 293 (479)
..+..++|++.+..|+. -...+.|..+++.. ......+.........+++.+.+. ++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 34567888886655544 44567888888875 121111111112345677775444 4444445678888887643
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc-cCC
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHK 372 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~ 372 (479)
....... ........++++|.+..|+.+... ..+.|...++... ....+. ..-
T Consensus 486 ~~~~l~~--~~~~~P~giavDp~~g~ly~td~~-----------------------~~~~I~~~~~dG~-~~~~l~~~~l 539 (699)
T 1n7d_A 486 KRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWG-----------------------TPAKIKKGGLNGV-DIYSLVTENI 539 (699)
T ss_dssp CEEEECC--CSSCCCCCEECCSSSSCCEECCCS-----------------------SSCCEEBCCSSSC-CCCEESCSSC
T ss_pred ceEEEEe--CCCCCcceEEEccCCCcEEEcccC-----------------------CCCeEEEEeCCCC-CeeEEEeCCC
Confidence 3211110 011123345566644433322110 0133444443321 111111 112
Q ss_pred CceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeec--CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895 373 KSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLP--GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448 (479)
Q Consensus 373 ~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~ 448 (479)
...+.|+++|+ +.++.+-+.. .|..++.........+. ........|++..+.++++-...++|..+|..+|..++
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 23467899986 4565555544 48888875433222221 11122334556666666777778899999988887765
Q ss_pred EE
Q psy8895 449 RL 450 (479)
Q Consensus 449 ~~ 450 (479)
.+
T Consensus 620 ~i 621 (699)
T 1n7d_A 620 LL 621 (699)
T ss_dssp CC
T ss_pred Ee
Confidence 55
No 286
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.15 E-value=1.5 Score=39.60 Aligned_cols=210 Identities=8% Similarity=0.082 Sum_probs=99.1
Q ss_pred CCcEEEEEe-CC-----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC-----CcEEEEECCCCC---
Q psy8895 230 GNEWFATGS-AD-----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNK--- 294 (479)
Q Consensus 230 ~g~~l~sgs-~d-----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~--- 294 (479)
++..++.|+ .+ ..+.++|+.+++....-....... .+++. .++..++.||.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 345555555 22 368889988775432111111111 12222 245666677654 468899987665
Q ss_pred cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC---------C--------CCCCeEEEEeCC-
Q psy8895 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA---------T--------EESHPVITGSHD- 351 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~---------~--------~~~~~l~sgs~d- 351 (479)
.............-..+.. ++..++.|+.+ ..+..||..... . .....++.|+.+
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence 2211111111111122222 34555555433 346667754321 0 012334555543
Q ss_pred ----CcEEEEECCCCeeE--EEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEE--eeecCCcceEE
Q psy8895 352 ----CTIRLWDLAAGKSL--CTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFI--QNLPGHNAIIN 417 (479)
Q Consensus 352 ----~~v~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~--~~~~~h~~~v~ 417 (479)
..+..||..+.+=. ..+........++. . ++.+++.++. +.+.+||..+.+-. ..++.......
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 45788888765322 11211112222222 2 4555555543 34788998776532 22222222122
Q ss_pred EEEEcCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895 418 SICVNNEGVLVSGADN-----GTMCFWDWRTGY 445 (479)
Q Consensus 418 ~l~~~~~~~l~sg~~d-----g~i~lWd~~~~~ 445 (479)
+ +...+..++.|+.+ ..+.+||.++++
T Consensus 249 ~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 A-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp E-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred E-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2 22344466667655 457889988764
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.13 E-value=3.2 Score=42.04 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=116.0
Q ss_pred ccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 297 (479)
.....++|++.+.. +++-..++.|..+++........+..-......+++++.+..|+ +-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 45678999986555 45555678899998876544333332223567889987666554 44456788898886433211
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
.. .........++++|....+..+.... .+.|...++..... ..+...-.....
T Consensus 117 l~--~~~l~~P~~iavdp~~G~lY~tD~g~-----------------------~~~I~r~~~dG~~~-~~l~~~~~~P~G 170 (628)
T 4a0p_A 117 LV--WKDLDSPRALALDPAEGFMYWTEWGG-----------------------KPKIDRAAMDGSER-TTLVPNVGRANG 170 (628)
T ss_dssp EE--CSSCCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSC-EEEECSCSSEEE
T ss_pred EE--eCCCCCcccEEEccCCCeEEEeCCCC-----------------------CCEEEEEeCCCCce-EEEECCCCCcce
Confidence 11 01223467788887655554433110 12233333332211 111112334678
Q ss_pred EEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895 378 VALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL 450 (479)
Q Consensus 378 i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~ 450 (479)
|+++++. .++.+-... .|...+...... ..+.........+++..+..+++-...+.|...|..+|.....+
T Consensus 171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 9999864 444444433 488888754433 22322223345677776556666667889999998888655444
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.89 E-value=0.97 Score=43.50 Aligned_cols=152 Identities=11% Similarity=0.144 Sum_probs=88.0
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCC
Q psy8895 263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDD 336 (479)
Q Consensus 263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~ 336 (479)
....++++| +...|+.+...+.|+.+|++........ ........++++++++.+.++...+ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC--
Confidence 346788997 3455665555588899998764432211 1334577899999998666554321 1111111
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCCeEEeee-cCCc
Q psy8895 337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEGKFIQNL-PGHN 413 (479)
Q Consensus 337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~~~~~~~-~~h~ 413 (479)
++... ....+..+ .....++++| ++.++++-..+ .|..++...+...... .+..
T Consensus 213 --------------~g~~~-----~~~~l~~~----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 213 --------------ESGFK-----VITELTKG----QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp --------------GGTSC-----SEEEEEEC----SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred --------------CCcee-----eeeeeccC----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 11100 00111121 2346788999 78877776544 5899998776642211 1122
Q ss_pred ceEEEEEEcCCC-E-EEEEeCCCcEEEEecC
Q psy8895 414 AIINSICVNNEG-V-LVSGADNGTMCFWDWR 442 (479)
Q Consensus 414 ~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~ 442 (479)
.....++++|++ + +++-...++|..++..
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 345688999988 3 4555567889998765
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.80 E-value=3.3 Score=40.43 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=42.3
Q ss_pred cEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCceEEEEecC---CcCEEEEEE-------cCCCCEEEEEECC
Q psy8895 221 WVRCVAVEPG--NEWFATGSADKIIKVWDLATGKLKLSLTGH---VGSVRGLTV-------SPRHPYLFSCGDD 282 (479)
Q Consensus 221 ~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---~~~v~~v~~-------~~~~~~l~s~~~d 282 (479)
.-..|+|+|+ ++++++-...+.|++.|+.++........- ......++| ++++.+|+.+...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 4567899983 455555555577999999887765544322 235789999 9999866666544
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.76 E-value=2.4 Score=38.75 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=64.2
Q ss_pred EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcccC
Q psy8895 222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCWDLEYNKAPVQ 298 (479)
Q Consensus 222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~ 298 (479)
...+++.+ ++.++++-...+.|.+.++........+.........++++|.+..++... ..+.|...++........
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 45678886 455666666778999999875543333333445678999998755555444 357788888754322111
Q ss_pred CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEe
Q psy8895 299 PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYK 333 (479)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~ 333 (479)
. ...-.....+++++++..+..+. ..+.|..++
T Consensus 161 ~--~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 161 I--NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred E--ECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 0 01123456788888666555443 333444444
No 291
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.19 E-value=3.3 Score=37.86 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=114.0
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC---CC
Q psy8895 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP---GS 301 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~ 301 (479)
.-.+|..+.||--. ..++.++|+++.+.++.+...+ .|.-=.|-.+. .|+-. .+..|.-|+++....+... ..
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lV-T~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSS-EEEEE-ESSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCC-eEEEE-cCCcEEEEcccCCCCCceeeecch
Confidence 34577777666654 6789999999998888877654 45444554332 33333 2457999999753333211 11
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH 381 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~ 381 (479)
.-....|.....+++.+.++..+.. . .... + .|.+.+|..+.+ .-..+++|......+.+.
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~------~-------~~~~-v----~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~ 208 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGIS------A-------QQNR-V----VGAMQLYSVDRK-VSQPIEGHAASFAQFKME 208 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEE------E-------ETTE-E----EEEEEEEETTTT-EEEEECCSEEEEEEECCT
T ss_pred hcccceEEEEEECCCCCEEEEEeEe------c-------cCCc-c----ceeEEEEeeccc-ccceeeeeeeeeEEEecC
Confidence 1124567777778888876543210 0 0011 1 256888887754 344567775444333322
Q ss_pred CC---CcEEEEEcC----CcEEEEeCCCC---eE-----Eeee--c--CCcceEEEEEEcC-CCEEEEEeCCCcEEEEec
Q psy8895 382 PT---LYMFASASP----DNIKQWKCPEG---KF-----IQNL--P--GHNAIINSICVNN-EGVLVSGADNGTMCFWDW 441 (479)
Q Consensus 382 ~~---~~~l~s~s~----d~i~~w~~~~~---~~-----~~~~--~--~h~~~v~~l~~~~-~~~l~sg~~dg~i~lWd~ 441 (479)
.. ..+|.-+.. .++.+-++... .. ...+ + .-.+.--++-+++ .+.+.--..-|.|.+||+
T Consensus 209 g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDl 288 (365)
T 2xzh_A 209 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 288 (365)
T ss_dssp TCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEc
Confidence 11 223333322 24677776322 11 1111 1 1123333444554 456666667899999999
Q ss_pred CCCeEEEEEEEe
Q psy8895 442 RTGYNFQRLQVR 453 (479)
Q Consensus 442 ~~~~~~~~~~~~ 453 (479)
.||.++.+.+..
T Consensus 289 eTgt~i~~nrIS 300 (365)
T 2xzh_A 289 ETGTCIYMNRIS 300 (365)
T ss_dssp TTCCEEEEEECC
T ss_pred ccCcEEEEeccC
Confidence 999998754433
No 292
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.15 E-value=3.1 Score=37.42 Aligned_cols=208 Identities=12% Similarity=0.178 Sum_probs=95.7
Q ss_pred cEEEEEeCC----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcccCCCC
Q psy8895 232 EWFATGSAD----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNKAPVQPGS 301 (479)
Q Consensus 232 ~~l~sgs~d----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~ 301 (479)
..++.|+.+ ..+..+|+.+.+....-....... .+++.. ++..++.||.+ ..+.+||+.+.+.......
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 444555532 357888988775432211111110 122222 55566677644 3588889876543211111
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCC-------C----------CCCCeEEEEeC-------CC
Q psy8895 302 MDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDDSA-------T----------EESHPVITGSH-------DC 352 (479)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~-------~----------~~~~~l~sgs~-------d~ 352 (479)
......-..+.+ ++..++.|+.++ .+..||..... . .....++.|+. -.
T Consensus 96 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 96 RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECC
T ss_pred CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcccc
Confidence 111111122222 445555565443 35566654321 0 01223444443 23
Q ss_pred cEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEE--eeecCCcceEEEEEEc
Q psy8895 353 TIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFI--QNLPGHNAIINSICVN 422 (479)
Q Consensus 353 ~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~ 422 (479)
.+..||..+.+= +..+....... ++... ++.+++.++. +.+.++|..+.+-. ..++...... +++..
T Consensus 174 ~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~ 250 (302)
T 2xn4_A 174 TVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV 250 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE
T ss_pred EEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE
Confidence 577888876532 22222222222 22222 4555555542 24788888766432 2222211111 12233
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCe
Q psy8895 423 NEGVLVSGADNG-----TMCFWDWRTGY 445 (479)
Q Consensus 423 ~~~~l~sg~~dg-----~i~lWd~~~~~ 445 (479)
.+.+++.|+.++ .+.+||.++++
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 444666676553 48899988863
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.00 E-value=6.8 Score=40.83 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=94.9
Q ss_pred CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc----ccCCCCCCCCCCeEEEEEe
Q psy8895 240 DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKA----PVQPGSMDSESGIFSMTFD 314 (479)
Q Consensus 240 d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~i~~~~~~ 314 (479)
...|+..++........+. ....+..+++++....|+ +-...+.|+.+++..... .... .........++++
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi--~~~l~~P~GLAvD 479 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVD 479 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CSSCSCCCEEEEE
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE--ecCCCCcceeeee
Confidence 3567778887665544444 345678899998555554 445567888888864211 0000 0011223456666
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC-CcEEEEEcC-
Q psy8895 315 NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-LYMFASASP- 392 (479)
Q Consensus 315 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~- 392 (479)
+.+..|..+. ...+.|.+.++........+...-...+.|+++|. +.++.+-..
T Consensus 480 ~~~~~LY~tD------------------------~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 480 WIHSNIYWTD------------------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp TTTTEEEEEE------------------------TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred ecCCcEEEEe------------------------cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 5554433222 22345555555533222222223345788999986 566666533
Q ss_pred -CcEEEEeCCCCeEEeeecCCcceEEEEEEcCC-CEE-EEEeCCCcEEEEecCCC
Q psy8895 393 -DNIKQWKCPEGKFIQNLPGHNAIINSICVNNE-GVL-VSGADNGTMCFWDWRTG 444 (479)
Q Consensus 393 -d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l-~sg~~dg~i~lWd~~~~ 444 (479)
..|...+.........+...-...+.|++++. +.| ++=....+|...++...
T Consensus 536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 34777776543333333333356788888854 444 44445567888887643
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.67 E-value=3.8 Score=36.85 Aligned_cols=207 Identities=10% Similarity=0.124 Sum_probs=98.7
Q ss_pred cEEEEEeC--CCeEEEEECCCCceEEE--EecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcccCCCCCC
Q psy8895 232 EWFATGSA--DKIIKVWDLATGKLKLS--LTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLEYNKAPVQPGSMD 303 (479)
Q Consensus 232 ~~l~sgs~--d~~i~iWd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~ 303 (479)
.+++.|+. ...+.+||..+++.... +......-..+. .++..++.||.+ ..+.+||+.+...........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 35788899888754322 111111111222 255566777754 678888987654321111011
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCC------CeEEEEeCCCCC------C-----------CCCCeEEEEeC---------C
Q psy8895 304 SESGIFSMTFDNSGSRLITTEAD------KTVKLYKEDDSA------T-----------EESHPVITGSH---------D 351 (479)
Q Consensus 304 ~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~------~-----------~~~~~l~sgs~---------d 351 (479)
....-..+.+ ++..++.|+.+ ..+..||..... . .....++.|+. -
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 1111122222 44555555543 346677755421 0 01223344432 3
Q ss_pred CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeE--EeeecCCcceEEEEEE
Q psy8895 352 CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKF--IQNLPGHNAIINSICV 421 (479)
Q Consensus 352 ~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~--~~~~~~h~~~v~~l~~ 421 (479)
..+.+||..+.+= +..+......- ++... ++.+++.++. +.+.++|..+.+= +..++.......++.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 245 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA- 245 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-
T ss_pred ceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-
Confidence 4578888877632 21121111222 22223 4555555442 2478888877642 222222222222222
Q ss_pred cCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895 422 NNEGVLVSGADN-----GTMCFWDWRTGY 445 (479)
Q Consensus 422 ~~~~~l~sg~~d-----g~i~lWd~~~~~ 445 (479)
..+.+++.|+.+ ..+.+||.++++
T Consensus 246 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 244467777744 568899998874
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.27 E-value=5.7 Score=37.61 Aligned_cols=175 Identities=15% Similarity=0.073 Sum_probs=96.5
Q ss_pred CCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCC
Q psy8895 218 HLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCWDLEYNK 294 (479)
Q Consensus 218 h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~~wd~~~~~ 294 (479)
.......+++.+ .+++.++-...+.|.+.++........+.........++++|.+..|+-.. ..+.|...++....
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 345567899987 556666666778999999876655444443444578999999666555443 24678888876433
Q ss_pred cccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc--cC
Q psy8895 295 APVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NH 371 (479)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h 371 (479)
..... ...-.....+++++.+..|..+. ..+.|.. .|+.......... ..
T Consensus 237 ~~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~-------------------------~d~dG~~~~~~~~~~~~ 289 (400)
T 3p5b_L 237 IYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISS-------------------------IDVNGGNRKTILEDEKR 289 (400)
T ss_dssp CEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEE-------------------------EETTSCCCEEEEECSST
T ss_pred cEEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEE-------------------------EeCCCCccEEEEeCCCC
Confidence 21111 01123466788887766665443 2233443 3433221111111 11
Q ss_pred CCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895 372 KKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGHNAIINSIC 420 (479)
Q Consensus 372 ~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~ 420 (479)
-.....+++..+ .++.+... +.|..++..+|+.+..+.........+.
T Consensus 290 l~~P~gl~v~~~-~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 290 LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TSSEEEEEEETT-EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCCCEEEEEeCC-EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 123346666443 44444444 3588888777766555543333334443
No 296
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.18 E-value=4.9 Score=36.57 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=94.3
Q ss_pred CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCC---CcccCCCCCCCCCCeEEEEEeCC
Q psy8895 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYN---KAPVQPGSMDSESGIFSMTFDNS 316 (479)
Q Consensus 241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~i~~~~~~~~ 316 (479)
..|+..|+.+......+.. ......++|++++..++ +-..++.|..+++... ....... .........+++++.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCcCEEEEeec
Confidence 4688889887765544443 34578999998665555 4445688999988641 1100000 001112345556554
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcC--C
Q psy8895 317 GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASP--D 393 (479)
Q Consensus 317 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~--d 393 (479)
+..+..+ -..++.|.+.|+........+.......+.++++| ++.++.+... .
T Consensus 88 ~~~ly~~------------------------d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 88 HSNIYWT------------------------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA 143 (316)
T ss_dssp TTEEEEE------------------------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCeEEEE------------------------ECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence 3333222 12233455555443222111222234568899998 4566666543 3
Q ss_pred cEEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCC
Q psy8895 394 NIKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRT 443 (479)
Q Consensus 394 ~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~ 443 (479)
.|...+.. |+....+ ...-...+.+++++++ .| ++-+..++|..+|+..
T Consensus 144 ~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 144 KIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 47767664 3333322 2233467889999654 44 5555667899999874
No 297
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.87 E-value=5.2 Score=36.06 Aligned_cols=166 Identities=11% Similarity=0.005 Sum_probs=85.0
Q ss_pred EEEEEcCCCcEEEEEeCC-C-eEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-cc-
Q psy8895 223 RCVAVEPGNEWFATGSAD-K-IIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA-PV- 297 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs~d-~-~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~- 297 (479)
..+++.++|+++++.... + .|..+|..+++....... .......++..+++..+++-..++.|..+|....+. ..
T Consensus 75 ~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEE
Confidence 456677777765554432 2 355566666655322221 112234555555554444444578888888764311 10
Q ss_pred -----CC-CCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCC-CCC------------------CCCCeEEEEeCC
Q psy8895 298 -----QP-GSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDD-SAT------------------EESHPVITGSHD 351 (479)
Q Consensus 298 -----~~-~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~-~~~------------------~~~~~l~sgs~d 351 (479)
.. ...........+ ++++..+..+ ...+.|..++.+. ... .+....++-...
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT
T ss_pred ECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCC
Confidence 00 000111223344 6677665544 5567888888753 110 112333344446
Q ss_pred CcEEEEECCCCeeEE--EEccCCCceEEEEEe---CCC-cEEEEEc
Q psy8895 352 CTIRLWDLAAGKSLC--TLTNHKKSVRSVALH---PTL-YMFASAS 391 (479)
Q Consensus 352 ~~v~iwd~~~~~~~~--~~~~h~~~v~~i~~~---~~~-~~l~s~s 391 (479)
+.|.++|.. ++... .+...-...++++|. |++ .++++..
T Consensus 233 ~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 233 NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 778888865 44422 233233467899998 775 4555544
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=92.51 E-value=8.4 Score=37.56 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=112.7
Q ss_pred ccEEEEEE-------cCCCcEEEEEeCCC-------eEEEEECCC-CceE-----EEEecCCcCEEEEEEcCC-CCEEEE
Q psy8895 220 GWVRCVAV-------EPGNEWFATGSADK-------IIKVWDLAT-GKLK-----LSLTGHVGSVRGLTVSPR-HPYLFS 278 (479)
Q Consensus 220 ~~v~~~~~-------~~~g~~l~sgs~d~-------~i~iWd~~~-~~~~-----~~~~~h~~~v~~v~~~~~-~~~l~s 278 (479)
.....++| +++|+.|+.+...+ .|.+.+... +... ..+.... ....++++|+ +.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEE
Confidence 35788999 99999666665543 255555433 2221 1222111 3357788995 444555
Q ss_pred EECCCcEEEEECC-------CCCc-----cc------CCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCC
Q psy8895 279 CGDDRTVKCWDLE-------YNKA-----PV------QPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSAT 339 (479)
Q Consensus 279 ~~~d~~i~~wd~~-------~~~~-----~~------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~ 339 (479)
-..++.|..+|+. ++.. +. .............++++|++..+..+ +....|+.++.+....
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 5677889999986 3332 00 00111223345789999999964444 5556777765432211
Q ss_pred C-CCCeEEEEeC--CCcEEEEECCCCee-EEEEccCCCceE-EEEEe-------CCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895 340 E-ESHPVITGSH--DCTIRLWDLAAGKS-LCTLTNHKKSVR-SVALH-------PTLYMFASASPD-NIKQWKCPEGKFI 406 (479)
Q Consensus 340 ~-~~~~l~sgs~--d~~v~iwd~~~~~~-~~~~~~h~~~v~-~i~~~-------~~~~~l~s~s~d-~i~~w~~~~~~~~ 406 (479)
. .....+.|.. .|.. | +.. ...| ..-. -++.. +++.++++-..+ .|+.++ .+|..
T Consensus 345 ~~~~~~~~aG~~g~~G~~---D---G~~~~a~f----~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v- 412 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYR---D---DVGTEARM----NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV- 412 (496)
T ss_dssp EECCCEEEEEBTTBCCCB---C---CBGGGCBC----SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-
T ss_pred eecccEEecCCCCCCccc---C---Cccccccc----CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-
Confidence 0 0112333321 1100 1 100 0011 1123 34444 456666666554 477777 45533
Q ss_pred eeecCC------------------------cceEEEEEEcCC-C-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895 407 QNLPGH------------------------NAIINSICVNNE-G-VLVSGADNGTMCFWDWRTGYNFQ 448 (479)
Q Consensus 407 ~~~~~h------------------------~~~v~~l~~~~~-~-~l~sg~~dg~i~lWd~~~~~~~~ 448 (479)
.++.|. -.....|+++++ + ++++=....+||.++++...+..
T Consensus 413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 233211 123678899986 7 55555667889999988766554
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.41 E-value=10 Score=38.30 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=104.1
Q ss_pred ccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895 220 GWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV 297 (479)
Q Consensus 220 ~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 297 (479)
..+.+++|.+.+ ..+++-...+.|..+++........+.........+++.+.+..|+ +-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 456788898854 4455555678888888876443333333334567889987555444 44566789998886432211
Q ss_pred CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
.. ...-.....++++|....+..+..... ..+.....||+ ....-....-...+.
T Consensus 429 l~--~~~l~~P~~iavdp~~G~ly~tD~g~~--------------~~I~r~~~dG~---------~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 429 LI--SEDLEEPRAIVLDPMVGYMYWTDWGEI--------------PKIERAALDGS---------DRVVLVNTSLGWPNG 483 (619)
T ss_dssp EE--CTTCCSEEEEEEETTTTEEEEEECSSS--------------CEEEEEETTSC---------SCEEEECSSCSCEEE
T ss_pred EE--ECCCCCeeeEEEEcCCCcEEEecCCCC--------------CEEEEEccCCC---------ccEEEEeCCCCCCee
Confidence 11 112345678888886444443321110 11222222322 111111112234578
Q ss_pred EEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q psy8895 378 VALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 378 i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~ 444 (479)
|+++++. .++.+-+.. .|...+.........+.........+++..+....+-...+.|..-|..+|
T Consensus 484 lalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC
T ss_pred eEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC
Confidence 8999754 444444433 477777643322211111111123445555545555556677777777777
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.35 E-value=15 Score=40.13 Aligned_cols=221 Identities=9% Similarity=0.089 Sum_probs=121.7
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCC--------ceEEEEecCCcCEEEEEEcCC----CCEEEEEE---CCCcEEEE
Q psy8895 224 CVAVEPGNEWFATGSADKIIKVWDLATG--------KLKLSLTGHVGSVRGLTVSPR----HPYLFSCG---DDRTVKCW 288 (479)
Q Consensus 224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~--------~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~---~d~~i~~w 288 (479)
|+++-. +.+++.||..|.-.+|.+... ..+..+. .-++|.++++... ...+++++ .+|++++.
T Consensus 331 sl~~l~-~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l 408 (1158)
T 3ei3_A 331 CLTYLD-NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 408 (1158)
T ss_dssp EEEECS-TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred EEEEEC-CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence 344433 448888998888788877643 2233343 3368888887532 23566543 56889887
Q ss_pred ECCCCCcccCCCCCCCCCCeEEEEEe---CCCCEEEEEeCCCeEEEEeC-C--------CCCCCCCCeEEEEeC-C----
Q psy8895 289 DLEYNKAPVQPGSMDSESGIFSMTFD---NSGSRLITTEADKTVKLYKE-D--------DSATEESHPVITGSH-D---- 351 (479)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~~~-~--------~~~~~~~~~l~sgs~-d---- 351 (479)
.-.-..........+.-..+|.+... ..+.+++.+..+.+. ++.. . .....+...++.+.- +
T Consensus 409 r~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~-Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~iv 487 (1158)
T 3ei3_A 409 RNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTR-VLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLI 487 (1158)
T ss_dssp EESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEE-EEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEE
T ss_pred ecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeE-EEEEeCCcccccccccccCCCCcEEEEEcCCCeEE
Confidence 53211111111112222456666543 234677777666663 3322 1 111123344555542 2
Q ss_pred ----CcEEEEECCCCeeEEEEccC-CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee-cCCcceEEEEEEcCC-
Q psy8895 352 ----CTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL-PGHNAIINSICVNNE- 424 (479)
Q Consensus 352 ----~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~- 424 (479)
..|++.+......+..++.. ...|...+.+.. +.+++ +.+.+.++++.++++.... ..-...|.|+++.+.
T Consensus 488 QVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-~vvva-~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~ 565 (1158)
T 3ei3_A 488 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSS-QVVVA-VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLG 565 (1158)
T ss_dssp EEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSS-EEEEE-ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred EEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-EEEEE-ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence 35667776655556555533 345777776543 34333 4455767766655432110 112346899998642
Q ss_pred ------CEEEEEeC-CCcEEEEecCCCeEEEE
Q psy8895 425 ------GVLVSGAD-NGTMCFWDWRTGYNFQR 449 (479)
Q Consensus 425 ------~~l~sg~~-dg~i~lWd~~~~~~~~~ 449 (479)
.+++.|.. |++++|+++.+-+.+..
T Consensus 566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLWTDISARILKLPSFELLHK 597 (1158)
T ss_dssp SSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence 37888886 99999999987665543
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.34 E-value=2.4 Score=40.28 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCcEEEEECCCCeeEEEEccC----CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE------------E--eeecC-
Q psy8895 351 DCTIRLWDLAAGKSLCTLTNH----KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF------------I--QNLPG- 411 (479)
Q Consensus 351 d~~v~iwd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~------------~--~~~~~- 411 (479)
++.||.=++......+.++-. ...|..+..+|++.+||..+...|.+-.++.+.. . ..+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 456666666644444444432 2367889999999999999999888877763210 1 11111
Q ss_pred ---CcceEEEEEEcCC----CEEEEEeCCCcEEEEecCCC
Q psy8895 412 ---HNAIINSICVNNE----GVLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 412 ---h~~~v~~l~~~~~----~~l~sg~~dg~i~lWd~~~~ 444 (479)
.+..|..+.|.|- +.|++-..|+.||+||+...
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 2467888888874 47888899999999999863
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.60 E-value=8.5 Score=35.68 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=57.5
Q ss_pred CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEe---cCCcCEEEEEEcCC---CCEEE-EEEC---C----C
Q psy8895 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLT---GHVGSVRGLTVSPR---HPYLF-SCGD---D----R 283 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~---~h~~~v~~v~~~~~---~~~l~-s~~~---d----~ 283 (479)
-..-..++|.|+|+++++ ..++.|+++| .+++ .+..+. .-......++++|+ +..|+ +-+. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 344578999999985555 5569999887 4454 112111 11245789999997 44444 4332 3 5
Q ss_pred cEEEEECCCCC------c-ccCCCCCCCCCCeEEEEEeCCCCEEEEE
Q psy8895 284 TVKCWDLEYNK------A-PVQPGSMDSESGIFSMTFDNSGSRLITT 323 (479)
Q Consensus 284 ~i~~wd~~~~~------~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 323 (479)
.|..|+..... . ...............+.|.|++...++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 67777765331 1 1100000111123468899999766553
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.47 E-value=0.48 Score=48.92 Aligned_cols=161 Identities=17% Similarity=0.076 Sum_probs=81.3
Q ss_pred EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcccC
Q psy8895 222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD--DRTVKCWDLEYNKAPVQ 298 (479)
Q Consensus 222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~ 298 (479)
...+++.+ .++++++-...+.|.+.++........+.........++++|.+.+|+.... .+.|...++........
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 34577774 4555566566788999998765443333322234578889986554443322 26777777643222111
Q ss_pred CCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc--cCCCce
Q psy8895 299 PGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSV 375 (479)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v 375 (479)
.. ........+++++++..|..+ ...+.|..+ |+........+. ......
T Consensus 535 ~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~-------------------------d~dG~~~~~~~~~~~~~~~P 587 (699)
T 1n7d_A 535 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSI-------------------------DVNGGNRKTILEDEKRLAHP 587 (699)
T ss_dssp SC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEE-------------------------CSSSSCCEEECCCSSSCSSC
T ss_pred Ee--CCCCCccEEEEeccCCEEEEEecCCCeEEEE-------------------------ccCCCceEEEEecCCcCCCc
Confidence 00 011223457777765544333 233344444 333211111111 111122
Q ss_pred EEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeec
Q psy8895 376 RSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLP 410 (479)
Q Consensus 376 ~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~ 410 (479)
..|++..+ .++.+... +.|..++..+++.+..+.
T Consensus 588 ~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 588 FSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred eEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 34555555 44445444 358888887787766654
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.39 E-value=8.3 Score=35.18 Aligned_cols=217 Identities=6% Similarity=0.003 Sum_probs=107.4
Q ss_pred CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EE-EEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895 219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KL-SLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294 (479)
Q Consensus 219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~-~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~ 294 (479)
...+.++.|.+++..++. +.++.| +.....|+. .. ... .....+..+.+++ +. ++.++.++.|.. ...+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE--ECCCC
Confidence 346899999877777774 556755 333333321 11 111 1234688899986 33 344456664433 22211
Q ss_pred cccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCCeEEE-Ee------CCCCC----------CCCCCeEEEEeCCCcEE
Q psy8895 295 APVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKL-YK------EDDSA----------TEESHPVITGSHDCTIR 355 (479)
Q Consensus 295 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~-~~------~~~~~----------~~~~~~l~sgs~d~~v~ 355 (479)
........ .....+..+.+.+++..++.+ .++.+.. .| ..... ......++.+ .++.+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~ 186 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFY 186 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEE
Confidence 11111000 112346677776666555544 3444322 11 10000 0112223333 334333
Q ss_pred -EEEC--CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec-C---CcceEEEEEEcCCCEEE
Q psy8895 356 -LWDL--AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP-G---HNAIINSICVNNEGVLV 428 (479)
Q Consensus 356 -iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~-~---h~~~v~~l~~~~~~~l~ 428 (479)
-+|- .+.+.+. ......+..+.+.+++.+++.+..+.+.+.+.+.++....+. . +...+..+.+.+++.++
T Consensus 187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (327)
T 2xbg_A 187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW 264 (327)
T ss_dssp EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred EEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence 3332 2223332 234567889999999888877766666665433344333322 1 22357888888777554
Q ss_pred EEeCCCcEEEEecCCCeE
Q psy8895 429 SGADNGTMCFWDWRTGYN 446 (479)
Q Consensus 429 sg~~dg~i~lWd~~~~~~ 446 (479)
.++.+|.+ ++....|..
T Consensus 265 ~~g~~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 265 LAGGAGAL-LCSQDGGQT 281 (327)
T ss_dssp EEESTTCE-EEESSTTSS
T ss_pred EEeCCCeE-EEeCCCCcc
Confidence 45567777 455555543
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.19 E-value=11 Score=36.04 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=114.6
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEE-cCCCCEEEEEECCCcEEEEECCCCCcccCC---C
Q psy8895 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV-SPRHPYLFSCGDDRTVKCWDLEYNKAPVQP---G 300 (479)
Q Consensus 225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~ 300 (479)
.-.+|..+.||--. ..++.|+|+++...++.+...++-+. =.| +++ .|+-. .+..|.-|+++....+... .
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vvf-WkWis~~--~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTF-WKWISLN--TVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCE-EEEEETT--EEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceE-EEecCCC--eEEEE-cCCeeEEecccCCCCchhheecc
Confidence 34567666666554 67999999999988888776654332 233 343 33333 3567999999753333211 1
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895 301 SMDSESGIFSMTFDNSGSRLITTEA---DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377 (479)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~ 377 (479)
..-....|.....+++.+.++..+. ++. + .|.+.+|..+.+ .-..+++|......
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~----------------v-----~G~mQLYS~er~-~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNR----------------V-----VGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTE----------------E-----EEEEEEEESTTC-CEEEECCSEEEEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCc----------------c-----cceEEEeecccc-ccchheeeeeeeEE
Confidence 1112456777777888887654321 111 1 356888887753 33456777555444
Q ss_pred EEEeCC---CcEEEEEcC----CcEEEEeCCCC---e--E---Eeeec----CCcceEEEEEEcCC-CEEEEEeCCCcEE
Q psy8895 378 VALHPT---LYMFASASP----DNIKQWKCPEG---K--F---IQNLP----GHNAIINSICVNNE-GVLVSGADNGTMC 437 (479)
Q Consensus 378 i~~~~~---~~~l~s~s~----d~i~~w~~~~~---~--~---~~~~~----~h~~~v~~l~~~~~-~~l~sg~~dg~i~ 437 (479)
+.+..+ ..+|.-+.. .++.+-++... . . ...+. .-.+.--++-+++. |.+.--..-|.|.
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ 283 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 283 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence 433221 133433332 24777776432 1 1 11111 11233344555544 5666667889999
Q ss_pred EEecCCCeEEEEEEEe
Q psy8895 438 FWDWRTGYNFQRLQVR 453 (479)
Q Consensus 438 lWd~~~~~~~~~~~~~ 453 (479)
+||+.||.++.+-+..
T Consensus 284 lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 284 LYDLETGTCIYMNRIS 299 (494)
T ss_dssp EEETTTCCEEEEEECC
T ss_pred EEecccceeeeeeccc
Confidence 9999999998765433
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=90.76 E-value=4.5 Score=37.00 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=72.6
Q ss_pred EEEEEE---cCCCcEEEEEe-------------CCCeEEEEECC---CCceEEEEe--cCC-----------cCEEEEEE
Q psy8895 222 VRCVAV---EPGNEWFATGS-------------ADKIIKVWDLA---TGKLKLSLT--GHV-----------GSVRGLTV 269 (479)
Q Consensus 222 v~~~~~---~~~g~~l~sgs-------------~d~~i~iWd~~---~~~~~~~~~--~h~-----------~~v~~v~~ 269 (479)
+..+.+ .|++.+++... .+..+..+|+. +++...... ... .....+++
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 367888 58887777543 26789999999 777655433 211 24789999
Q ss_pred cCCCCEEEEEECC-CcEEEEECCCCCcc-c--CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895 270 SPRHPYLFSCGDD-RTVKCWDLEYNKAP-V--QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED 335 (479)
Q Consensus 270 ~~~~~~l~s~~~d-~~i~~wd~~~~~~~-~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~ 335 (479)
.++|...++++.- +.|...+....... . ............-+++.|++..|++....+.+.-++..
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 9999988888777 76666655432111 0 00001112235568889988888777666666666654
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.35 E-value=9.8 Score=34.20 Aligned_cols=210 Identities=11% Similarity=0.128 Sum_probs=97.3
Q ss_pred CCcEEEEEeC----CCeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEEC----C-----CcEEEEECCCCCc
Q psy8895 230 GNEWFATGSA----DKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGD----D-----RTVKCWDLEYNKA 295 (479)
Q Consensus 230 ~g~~l~sgs~----d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~----d-----~~i~~wd~~~~~~ 295 (479)
++..++.|+. -..+.++|..+++....-...... -.+++.. ++..++.||. + ..+.+||+.+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 4555666653 236888998877543221100100 0122222 4556666665 2 4688889876543
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC--
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD-- 351 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d-- 351 (479)
............-..+.+ ++..++.|+.+ ..+..||..... . .....++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 180 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence 221111111111222222 44555555432 346667654321 0 012334455443
Q ss_pred ---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEEe--eecCCcceEEE
Q psy8895 352 ---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFIQ--NLPGHNAIINS 418 (479)
Q Consensus 352 ---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~~--~~~~h~~~v~~ 418 (479)
..+..||..+.+= +..+........++.+ ++.+++.++. +.+.++|..+.+-.. .++.......
T Consensus 181 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~- 257 (308)
T 1zgk_A 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG- 257 (308)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-
T ss_pred CcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE-
Confidence 4577888876532 1112111222222332 4555555542 347888887764322 2222221112
Q ss_pred EEEcCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895 419 ICVNNEGVLVSGADN-----GTMCFWDWRTGY 445 (479)
Q Consensus 419 l~~~~~~~l~sg~~d-----g~i~lWd~~~~~ 445 (479)
++...+.+++.|+.+ ..+.+||.++++
T Consensus 258 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 258 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 222344466666643 457889988764
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.67 E-value=19 Score=36.42 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=113.5
Q ss_pred ccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEec------CCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895 220 GWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTG------HVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE 291 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~ 291 (479)
..+..+.|.+.++.| .+=...+.|+.+++........+.. .......+++.+.++.|+ +-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 557889998865554 4444567888888764433223322 223678999998877655 55567788888875
Q ss_pred CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895 292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN 370 (479)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~ 370 (479)
........ .........++++|....+.... ....- .|...++.......-...
T Consensus 420 G~~~~~l~--~~~l~~Pr~iavdp~~g~ly~tD~g~~~~-----------------------~I~r~~~dG~~~~~l~~~ 474 (628)
T 4a0p_A 420 GRSVGVVL--KGEQDRPRAVVVNPEKGYMYFTNLQERSP-----------------------KIERAALDGTEREVLFFS 474 (628)
T ss_dssp SCEEEEEE--ECTTCCEEEEEEETTTTEEEEEEEETTEE-----------------------EEEEEETTSCSCEEEECS
T ss_pred CCeEEEEE--eCCCCceeeEEEecCCCeEEEeecCCCCC-----------------------eEEEEeCCCCCcEEEEec
Confidence 43211110 11224567888888544443321 11100 222223321111111111
Q ss_pred CCCceEEEEEeCCC-cEEEEEcC-CcEEEEeCCCCeEEeeec-CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895 371 HKKSVRSVALHPTL-YMFASASP-DNIKQWKCPEGKFIQNLP-GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447 (479)
Q Consensus 371 h~~~v~~i~~~~~~-~~l~s~s~-d~i~~w~~~~~~~~~~~~-~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~ 447 (479)
.-...+.|+++++. .++.+-+. +.|...+..... .+.+. ........+++..+..+.+=.....|...|..+|...
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCC
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCc
Confidence 22345889999875 44444443 358888874333 33332 3333456777776556677677788888888888755
Q ss_pred EEEE
Q psy8895 448 QRLQ 451 (479)
Q Consensus 448 ~~~~ 451 (479)
..++
T Consensus 554 ~~i~ 557 (628)
T 4a0p_A 554 TKVQ 557 (628)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=88.89 E-value=15 Score=34.12 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=53.5
Q ss_pred CCcEEEEECCCC----eeEEEEccC-CCceEEEEEeCCCcEEEEEcC----------------C--cEEEEeCCCCeEEe
Q psy8895 351 DCTIRLWDLAAG----KSLCTLTNH-KKSVRSVALHPTLYMFASASP----------------D--NIKQWKCPEGKFIQ 407 (479)
Q Consensus 351 d~~v~iwd~~~~----~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~----------------d--~i~~w~~~~~~~~~ 407 (479)
+.+|.+|++..+ ..+.++.+. -...+.+.+.+++..+++..- . .+..++. ++. .
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-R 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-E
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-E
Confidence 456667666543 123344432 235789999999988777541 1 2444443 222 1
Q ss_pred eecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCC
Q psy8895 408 NLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRT 443 (479)
Q Consensus 408 ~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~ 443 (479)
.+...-..-+.++++||+ . +++-+..++|..|++..
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 222222346889999998 4 45556678999999873
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.70 E-value=12 Score=33.37 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=37.4
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC------CcEEEEECCCCC
Q psy8895 230 GNEWFATGSAD----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD------RTVKCWDLEYNK 294 (479)
Q Consensus 230 ~g~~l~sgs~d----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d------~~i~~wd~~~~~ 294 (479)
+++.++.|+.+ ..+.++|+.+++....-....... .+++. -++..++.||.+ ..+.+||+.+..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 56777777754 578889998876543221111111 12222 256666777655 468889987654
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=88.11 E-value=16 Score=33.69 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=57.5
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--EEEe---cCCcCEEEEEEcCC---CCEEEEE-ECC-----CcE
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK--LSLT---GHVGSVRGLTVSPR---HPYLFSC-GDD-----RTV 285 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~--~~~~---~h~~~v~~v~~~~~---~~~l~s~-~~d-----~~i 285 (479)
..-..++|.|+|+++++ ..++.|.+++ .++.. ..+. .-......++++|+ +..|+.+ ... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34568999999986655 5669999998 44321 1111 11346789999998 4444433 322 567
Q ss_pred EEEECCCCC-----cccC-CCC-CCCCCCeEEEEEeCCCCEEEEE
Q psy8895 286 KCWDLEYNK-----APVQ-PGS-MDSESGIFSMTFDNSGSRLITT 323 (479)
Q Consensus 286 ~~wd~~~~~-----~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~ 323 (479)
..++..... .... ... .........++|.|++...++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 777765321 1111 100 0111223478999999755553
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.69 E-value=13 Score=41.20 Aligned_cols=202 Identities=13% Similarity=0.140 Sum_probs=101.5
Q ss_pred EcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC---CC
Q psy8895 227 VEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS---MD 303 (479)
Q Consensus 227 ~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~ 303 (479)
.+|..+.||--. ..++.|+|+.+...++.+.... .|.-=.|-... .|+-. .+..|.-|+++....+..... .-
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcchhc
Confidence 455555544433 6799999999887777766544 34333443222 22222 345799999965333322111 11
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe--
Q psy8895 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH-- 381 (479)
Q Consensus 304 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~-- 381 (479)
....|..-..+++.+.++..+... . .+.-.|.+.+|..+.+ .-..++||......+...
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~-------------~-----~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISA-------------Q-----QNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeecc-------------C-----CCcccceeeeeecccc-cchhhhHhHhhhheeccCCC
Confidence 235566667777777665432210 0 0122456777766543 222345554433333221
Q ss_pred -CCCcEEEEEcC----CcEEEEeCCCC---e--EEee---ecC----CcceEEEEEEcC-CCEEEEEeCCCcEEEEecCC
Q psy8895 382 -PTLYMFASASP----DNIKQWKCPEG---K--FIQN---LPG----HNAIINSICVNN-EGVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 382 -~~~~~l~s~s~----d~i~~w~~~~~---~--~~~~---~~~----h~~~v~~l~~~~-~~~l~sg~~dg~i~lWd~~~ 443 (479)
+...+|.-+.. .++.+-++... . ..+. +.- -.+..-++-+++ .|.+..-..-|.|.++|+.|
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 11223322221 24666665332 1 1100 000 112223344454 35555566789999999999
Q ss_pred CeEEEEEE
Q psy8895 444 GYNFQRLQ 451 (479)
Q Consensus 444 ~~~~~~~~ 451 (479)
|.++.+-+
T Consensus 290 ~~~i~~~r 297 (1630)
T 1xi4_A 290 GTCIYMNR 297 (1630)
T ss_pred chhhhhcc
Confidence 98886544
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.41 E-value=14 Score=32.78 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCc---eEEEEecCCcC-EEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCc
Q psy8895 230 GNEWFATGSAD-----KIIKVWDLATGK---LKLSLTGHVGS-VRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNKA 295 (479)
Q Consensus 230 ~g~~l~sgs~d-----~~i~iWd~~~~~---~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~ 295 (479)
+++.++.|+.+ ..+.+||+.+.+ ....-...... -.+++.. ++..++.||.+ ..+.+||+.+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 46777777754 468899998876 43221111111 1122222 56666666643 3688889876543
Q ss_pred ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC--
Q psy8895 296 PVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD-- 351 (479)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d-- 351 (479)
............-..+.+ ++..++.|+.+ ..+..||..... . .....++.|+.+
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT 218 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCC
Confidence 211100011111112222 45555555443 346667754321 0 012345556543
Q ss_pred ---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCe
Q psy8895 352 ---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGK 404 (479)
Q Consensus 352 ---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~ 404 (479)
..+.+||+.+.+= +..+........++.+ ++.+++.++.+ .+.++|..+.+
T Consensus 219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4688899887642 2222211222222222 44555555432 25667766543
No 314
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.17 E-value=3.6 Score=37.89 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=66.0
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEE--cC-CCCEEEEE-ECCCcEEEEECCCCCcccCCCC--CC
Q psy8895 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTV--SP-RHPYLFSC-GDDRTVKCWDLEYNKAPVQPGS--MD 303 (479)
Q Consensus 231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~--~~-~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~--~~ 303 (479)
+..++.++.||.|.-.|..+|+.++.++... .++....- .+ ++..++.. ..||.|..+|.+++........ .-
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3578889999999999999999999887541 12221110 01 22233232 5788888888765422110000 00
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT 369 (479)
Q Consensus 304 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~ 369 (479)
..+++. .. +.-++ -|. ........+++|+.++++...|+++|+.+.++.
T Consensus 90 ~~SP~~---~~--~~pvv----------~~~--~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLH---LK--TNIVV----------NDS--GKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEE---EE--CC----------------------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eccccc---cC--CCcee----------ecc--cccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 000000 00 00000 000 000123457889999999999999999998885
No 315
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=83.96 E-value=18 Score=33.36 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=46.7
Q ss_pred EEEEE--cCC-Cc-EEEEEeCCCeEEEEECC---CC----ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895 223 RCVAV--EPG-NE-WFATGSADKIIKVWDLA---TG----KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291 (479)
Q Consensus 223 ~~~~~--~~~-g~-~l~sgs~d~~i~iWd~~---~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~ 291 (479)
..+++ +|. ++ +++....++.+..|++. .+ +.+.++.- .+.+..+.+.+....|+.+-+|.-|..+|.+
T Consensus 131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 34444 664 44 67778888999999883 33 34455553 3467888899888889999888666555643
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.60 E-value=1.9 Score=39.74 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=67.3
Q ss_pred CeEEEEeCCCcEEEEECCCCeeEEEEccCC-CceEEEEE--e-CCCcEEEEE--cCCcEEEEeCCCCeEEeeecC----C
Q psy8895 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHK-KSVRSVAL--H-PTLYMFASA--SPDNIKQWKCPEGKFIQNLPG----H 412 (479)
Q Consensus 343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~~v~~i~~--~-~~~~~l~s~--s~d~i~~w~~~~~~~~~~~~~----h 412 (479)
..++.++.||.|.-.|..+|+.+.+++... .++....- . .++..++.. .++.+..++..+|.......- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 457889999999999999999999886431 12111100 0 122344442 344577777777644322211 1
Q ss_pred cceEEE---EEE------cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895 413 NAIINS---ICV------NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453 (479)
Q Consensus 413 ~~~v~~---l~~------~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~ 453 (479)
..++.. ..+ +.++.+++|+.+|++.--|.+||+.+.++...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111110 001 25668899999999999999999988777544
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=82.36 E-value=21 Score=31.88 Aligned_cols=169 Identities=10% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCcEEEEEeC----C-----CeEEEEECCCCceEEEEecCC--cCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q psy8895 230 GNEWFATGSA----D-----KIIKVWDLATGKLKLSLTGHV--GSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYN 293 (479)
Q Consensus 230 ~g~~l~sgs~----d-----~~i~iWd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~ 293 (479)
+++.++.|+. + ..+.++|+.+.+....-.... ..-..+.+ ++..++.||.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4666666665 2 467889988775432211111 11112222 55566666533 46888998765
Q ss_pred CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC
Q psy8895 294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD 351 (479)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d 351 (479)
+.............-..+.+ ++..++.|+.+ ..+..||..... . .....++.|+.+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCC
Confidence 43221111111111122222 44555555443 346677754321 0 012344555543
Q ss_pred -----CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCe
Q psy8895 352 -----CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGK 404 (479)
Q Consensus 352 -----~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~ 404 (479)
..+.+||+.+.+= +..+........ +... ++.+++.++. +.+.++|..+.+
T Consensus 226 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCccceEEEEeCCCCcEEECCCCCCCccceE-EEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 4688888877532 111221122222 2222 4455555542 236677776553
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=82.13 E-value=27 Score=31.00 Aligned_cols=170 Identities=13% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcccC
Q psy8895 230 GNEWFATGSAD-----KIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGDDR-----TVKCWDLEYNKAPVQ 298 (479)
Q Consensus 230 ~g~~l~sgs~d-----~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~ 298 (479)
+++.++.|+.+ ..+.+||..+.+....-...... -.+++.. ++..++.||.++ .+.+||+.+.+....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 56677777754 35888998877543321111111 1122222 556667776553 577888876543221
Q ss_pred CCCCCCCCCeEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCC-------C----------CCCCeEEEEeCC---
Q psy8895 299 PGSMDSESGIFSMTFDNSGSRLITTEA-------DKTVKLYKEDDSA-------T----------EESHPVITGSHD--- 351 (479)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~~~~~~~-------~----------~~~~~l~sgs~d--- 351 (479)
............+.+ ++...+.|+. ...+..||..... . ....+++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL 217 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence 111111111122222 3445555433 2346677764321 0 012345556543
Q ss_pred --CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCe
Q psy8895 352 --CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGK 404 (479)
Q Consensus 352 --~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~ 404 (479)
..+.+||..+.+= +..+....... ++... ++.+++.++.+ .+.+||..+.+
T Consensus 218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 218 VRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE-CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3688889877532 22221111111 22222 45555555432 37788876654
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=80.64 E-value=2.1 Score=36.70 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=57.3
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce------EEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKL------KLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~------~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
.+..++|+|+|.+.+. .++.+.--+..+... -..+- +-.. -.++.|.|+|.+.++ .|+.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999986665 566644444433211 01110 1111 368899999977666 668888776532
Q ss_pred CCcc-c-CCCC-CCC--CCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895 293 NKAP-V-QPGS-MDS--ESGIFSMTFDNSGSRLITTEADKTV 329 (479)
Q Consensus 293 ~~~~-~-~~~~-~~~--~~~i~~~~~~~~~~~l~~~~~d~~i 329 (479)
.... . -... ... =..+..+.+.|+|...++. ++.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 1110 0 0000 000 0246788899999877766 5553
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=80.40 E-value=34 Score=31.24 Aligned_cols=64 Identities=8% Similarity=-0.095 Sum_probs=33.3
Q ss_pred CCcEEEEEeCC-CeEEEEECCC--CceEEEEecC-CcC-EEEEEEcCCCCEEEEEEC-C---------CcEEEEECCCCC
Q psy8895 230 GNEWFATGSAD-KIIKVWDLAT--GKLKLSLTGH-VGS-VRGLTVSPRHPYLFSCGD-D---------RTVKCWDLEYNK 294 (479)
Q Consensus 230 ~g~~l~sgs~d-~~i~iWd~~~--~~~~~~~~~h-~~~-v~~v~~~~~~~~l~s~~~-d---------~~i~~wd~~~~~ 294 (479)
+++.++.|+.+ ..+.++|+.+ .+....-... ... -.+++.. ++.+++.||. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 56666776643 4688888864 3322111111 111 1122222 4556666665 2 468889987654
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=79.93 E-value=74 Score=34.73 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=48.4
Q ss_pred CccEEEEEEcCC------CcEEEEEeC-CCeEEEEECCCCceEEEEec-CCcCEEEEEEc--CCCCEEEEEECCCcEEEE
Q psy8895 219 LGWVRCVAVEPG------NEWFATGSA-DKIIKVWDLATGKLKLSLTG-HVGSVRGLTVS--PRHPYLFSCGDDRTVKCW 288 (479)
Q Consensus 219 ~~~v~~~~~~~~------g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~--~~~~~l~s~~~d~~i~~w 288 (479)
.+.|.|+++.|. +++++.|.+ |++++|+++.+.+.+....- -.....++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999763 368999997 99999999987665533221 11233444332 234577888899988766
Q ss_pred ECC
Q psy8895 289 DLE 291 (479)
Q Consensus 289 d~~ 291 (479)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 553
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.18 E-value=2.2 Score=45.60 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.7
Q ss_pred ceEEEEEccCCceEEEecCCCeEEEEeecccceEeeec
Q psy8895 35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT 72 (479)
Q Consensus 35 ~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~ 72 (479)
.|.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56788888888999999999999999999999887653
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=79.11 E-value=7.9 Score=33.16 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcce--------EEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAI--------INSICVNNEGVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~--------v~~l~~~~~~~l~sg~~dg~i~lWd~~~ 443 (479)
..++.++|+|++.+.+. .++.+..-+..+.... .+.+-... -.++.|.+++.|... .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36789999999998888 6666555554432110 00001112 367889999966655 569998787643
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=79.07 E-value=62 Score=33.29 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=99.2
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP 299 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 299 (479)
..|.++....+|. |..|+.+| +..+|..+.+...........|.++... ++. +..+..+ -|..+|..+.+.....
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GDT-LWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TTE-EEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CCc-EEEEcCC-cceeEeCCCCeEEEec
Confidence 4577877766664 55555555 6789988764432111122357776553 453 4445555 5778887654321100
Q ss_pred --CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE-Ecc----CC
Q psy8895 300 --GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT-LTN----HK 372 (479)
Q Consensus 300 --~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~----h~ 372 (479)
........|.++..+.++...+ + +.+ -+..+|..+++.... ... ..
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWi-g-------------------------t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~ 190 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYV-G-------------------------TYN-GLCRYIPSNGKFEGIPLPVHSSQSN 190 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEE-E-------------------------ETT-EEEEEETTTTEEEEECCCCCTTCSS
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEE-E-------------------------eCC-CHhhCccCCCceEEecCCCcccccc
Confidence 0001123455555554444322 2 222 234444443332111 010 12
Q ss_pred CceEEEEEeCCCc-EEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q psy8895 373 KSVRSVALHPTLY-MFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG 444 (479)
Q Consensus 373 ~~v~~i~~~~~~~-~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~ 444 (479)
..|.++...+++. +.++. .+.+..++..+++......-....|.+++..+++.|-.|..+ -+.+++..++
T Consensus 191 ~~i~~i~~d~~~~~lWigt-~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGT-EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTT 261 (758)
T ss_dssp CCEEEEEEETTTTEEEEEE-EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTS
T ss_pred ceeEEEEEECCCCEEEEEE-CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCC
Confidence 3488888887654 44443 456888888776543221112345888888888855555554 4677887665
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=75.72 E-value=44 Score=29.82 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=33.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEEC-----C------CcEEEEECCCCC
Q psy8895 233 WFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGD-----D------RTVKCWDLEYNK 294 (479)
Q Consensus 233 ~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~-----d------~~i~~wd~~~~~ 294 (479)
+++.|+ ..+.+||..+++... .+..........+...++..++.||. . ..+..||+.+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344454 568899998886543 12111122233334456777777773 1 126778887654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=74.47 E-value=60 Score=30.82 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc-------
Q psy8895 229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV------- 297 (479)
Q Consensus 229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~------- 297 (479)
.+|.-++.+- ++.||.-++.....-+.+.-. -..|..+..+|+|.+|+..+ +..|.+-.+..+....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3455555543 478888887744333333322 22578899999999988764 4578888875221100
Q ss_pred -------CCC--CCCCCCCeEEEEEeCCC---CEEEEEeCCCeEEEEeCCC
Q psy8895 298 -------QPG--SMDSESGIFSMTFDNSG---SRLITTEADKTVKLYKEDD 336 (479)
Q Consensus 298 -------~~~--~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~~~~~~~ 336 (479)
... .......|..+.|+|-+ ..+++-..|+.|++|+...
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 000 01124678888888853 4666667777777776654
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=73.73 E-value=65 Score=30.85 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=58.9
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EEec------CCcCEEEEEEcCC---CCEEE-EEEC------
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTG------HVGSVRGLTVSPR---HPYLF-SCGD------ 281 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--~~~~------h~~~v~~v~~~~~---~~~l~-s~~~------ 281 (479)
..-..|+|.|+|.++++-...+.|++++..++.... .+.. -......|+|+|+ ...|. +-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 345799999999988775544578888766564422 2221 1345679999995 44444 3332
Q ss_pred ------CCcEEEEECCCCC-------cccCCCCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895 282 ------DRTVKCWDLEYNK-------APVQPGSMDSESGIFSMTFDNSGSRLITTE 324 (479)
Q Consensus 282 ------d~~i~~wd~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 324 (479)
...|.-++..... .+..............+.|.|++...++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1245555543211 111100111123467899999987665543
No 328
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.44 E-value=2.4 Score=46.45 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=33.5
Q ss_pred cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeec
Q psy8895 34 SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT 72 (479)
Q Consensus 34 ~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~ 72 (479)
..+.+++..++..+++|-+.|+++||||+.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 356677788888999999999999999999999887653
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=73.18 E-value=51 Score=29.41 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=90.8
Q ss_pred eEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEEC----CC-------cEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895 242 IIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGD----DR-------TVKCWDLEYNKAPVQPGSMDSESGIF 309 (479)
Q Consensus 242 ~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~----d~-------~i~~wd~~~~~~~~~~~~~~~~~~i~ 309 (479)
.+..||..+++... .+..............++..++.||. ++ .+..+|+.+.+.............-.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 37889998876543 22211122223334456777777773 12 16778886654322111111111111
Q ss_pred EEEEeCCCCEEEEEeCC-------CeEEEEeCCCCC------C-----------CCCCeEEEEeC------CCcEEEEEC
Q psy8895 310 SMTFDNSGSRLITTEAD-------KTVKLYKEDDSA------T-----------EESHPVITGSH------DCTIRLWDL 359 (479)
Q Consensus 310 ~~~~~~~~~~l~~~~~d-------~~i~~~~~~~~~------~-----------~~~~~l~sgs~------d~~v~iwd~ 359 (479)
.+.+ ++...+.|+.+ ..+..||..... . .....++.|+. -..+.+||.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 2222 34555555543 235566654321 0 01223444443 235888888
Q ss_pred CCCee--EEEEccCCCceEEEEEeCCCcEEEEEc-CC-----cEEEEeCCCCeE--EeeecCCcceEEEEEEcCCCEEEE
Q psy8895 360 AAGKS--LCTLTNHKKSVRSVALHPTLYMFASAS-PD-----NIKQWKCPEGKF--IQNLPGHNAIINSICVNNEGVLVS 429 (479)
Q Consensus 360 ~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d-----~i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~~l~s 429 (479)
.+.+= +..+....... +++.. ++.+++.++ .+ .+.++|..+.+- +..++...... +++...+.+++.
T Consensus 183 ~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~ 259 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMF-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLVSLAGSLYAI 259 (318)
T ss_dssp TTTEEEEECCCSSCCBSC-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCcccc-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEEEECCEEEEE
Confidence 77532 21122112222 22333 344444443 22 366788776542 22232222211 223334446666
Q ss_pred EeCC--------------CcEEEEecCCCe
Q psy8895 430 GADN--------------GTMCFWDWRTGY 445 (479)
Q Consensus 430 g~~d--------------g~i~lWd~~~~~ 445 (479)
|+.+ ..+.+||.++++
T Consensus 260 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 260 GGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 6643 357888988864
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.57 E-value=60 Score=29.93 Aligned_cols=216 Identities=14% Similarity=0.170 Sum_probs=104.4
Q ss_pred cEEEEEEcCCCcEEEEEe------------CCCeEEEEECCC--CceE-EEEec-----CCcCEEEEEEcC--CCC-EEE
Q psy8895 221 WVRCVAVEPGNEWFATGS------------ADKIIKVWDLAT--GKLK-LSLTG-----HVGSVRGLTVSP--RHP-YLF 277 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs------------~d~~i~iWd~~~--~~~~-~~~~~-----h~~~v~~v~~~~--~~~-~l~ 277 (479)
....+.+.|+|..+++++ .+|.|.++|.++ ++.. ..+.+ ..-.-..+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345677788776555542 689999999873 3321 13333 122456666654 343 343
Q ss_pred EE-EC--CCcEEEEECCCCCcc--c-CCCCCCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCeEEEE
Q psy8895 278 SC-GD--DRTVKCWDLEYNKAP--V-QPGSMDSESGIFSMTFDNSGSRLITTEA---DKTVKLYKEDDSATEESHPVITG 348 (479)
Q Consensus 278 s~-~~--d~~i~~wd~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~l~sg 348 (479)
.+ .. +.++.+|+++..... . .......-.....+.+.++|...++... |.....++. ..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~-----------~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM-----------HLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH-----------HTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh-----------hcc
Confidence 33 22 467788776543211 1 0001122345677777777765554331 000000000 000
Q ss_pred eCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEE-cC-CcEEEEeCC-CCeE--EeeecCCcceEEEEEEcC
Q psy8895 349 SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA-SP-DNIKQWKCP-EGKF--IQNLPGHNAIINSICVNN 423 (479)
Q Consensus 349 s~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-s~-d~i~~w~~~-~~~~--~~~~~~h~~~v~~l~~~~ 423 (479)
...+.|..+|.. +. ..+...-..-+.++|+||+..+..+ +. ..|..|++. +++. ...+ .-.+....+++.+
T Consensus 200 ~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~ 275 (355)
T 3sre_A 200 LAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDP 275 (355)
T ss_dssp CCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECT
T ss_pred CCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeC
Confidence 112334444442 21 1221112345889999998655444 33 358888874 3433 1222 2245667788888
Q ss_pred -CC-EEEEEeCC-CcEEEEecC--CCeEEEEEE
Q psy8895 424 -EG-VLVSGADN-GTMCFWDWR--TGYNFQRLQ 451 (479)
Q Consensus 424 -~~-~l~sg~~d-g~i~lWd~~--~~~~~~~~~ 451 (479)
+| +.+++..+ +.|..||-. .+..+.+++
T Consensus 276 e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 276 VTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp TTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 47 44545433 344444433 244444443
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=71.73 E-value=92 Score=31.73 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCC----CeEEEEECCCCceEEEE-e-----cCCc-CEEEEEEcC-CCCEEEEEECC------CcEEEEEC
Q psy8895 229 PGNEWFATGSAD----KIIKVWDLATGKLKLSL-T-----GHVG-SVRGLTVSP-RHPYLFSCGDD------RTVKCWDL 290 (479)
Q Consensus 229 ~~g~~l~sgs~d----~~i~iWd~~~~~~~~~~-~-----~h~~-~v~~v~~~~-~~~~l~s~~~d------~~i~~wd~ 290 (479)
.++..++.|+.+ ..+.++|..+++....- . .... .-.+++..+ ++..++.||.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46788898877654322 1 1111 112333333 66677777643 35677887
Q ss_pred CCCC
Q psy8895 291 EYNK 294 (479)
Q Consensus 291 ~~~~ 294 (479)
.+..
T Consensus 476 ~t~~ 479 (695)
T 2zwa_A 476 KTRE 479 (695)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 6543
No 332
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.73 E-value=5.3 Score=40.63 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=29.6
Q ss_pred ceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecc
Q psy8895 35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTG 73 (479)
Q Consensus 35 ~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~ 73 (479)
.|.++.+ +..+|+|-+.|+++|+||+.+++.+.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 368999999999999999999998876543
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=66.34 E-value=80 Score=28.96 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=36.3
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc-cC-C--CCCCCCCCeEEEEEeCC
Q psy8895 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP-VQ-P--GSMDSESGIFSMTFDNS 316 (479)
Q Consensus 262 ~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~-~--~~~~~~~~i~~~~~~~~ 316 (479)
..-+.|+|.|+|.++++--..|.|++++...+... .. . .....+.....++++|+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 45689999999987776544889999876543321 10 1 11123467889999985
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=64.34 E-value=87 Score=28.64 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEe-------cCCcCEEEEEEcCC
Q psy8895 221 WVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLT-------GHVGSVRGLTVSPR 272 (479)
Q Consensus 221 ~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~-------~h~~~v~~v~~~~~ 272 (479)
.-..++|.|+|+ +++ +...+.|++++.. +.....+. ........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence 347899999998 555 4567899998853 33211111 11235689999996
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=63.71 E-value=89 Score=28.56 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCc-ccC-C--CCCCCCCCeEEEEEeCC
Q psy8895 263 SVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKA-PVQ-P--GSMDSESGIFSMTFDNS 316 (479)
Q Consensus 263 ~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~-~--~~~~~~~~i~~~~~~~~ 316 (479)
.-+.|+|.|+++ +++ +...+.|++++...... ... . ...........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 457999999998 554 45778999998532211 111 1 01122356788999985
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.24 E-value=12 Score=40.02 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=32.8
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~ 257 (479)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677777788889999999999999999999987764
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=61.15 E-value=1.5e+02 Score=30.21 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCC------eEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEECCC--cEEEEECCCCC
Q psy8895 230 GNEWFATGSADK------IIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNK 294 (479)
Q Consensus 230 ~g~~l~sgs~d~------~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~ 294 (479)
+++.++.|+.++ .+.+||..+.+....-...... -.+++...++..++.||.++ .+.+||+.+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 677788877543 5778888876543221111111 12333324777888877654 68999987654
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=56.72 E-value=1.8e+02 Score=29.77 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=119.4
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 300 (479)
.|.++...+++..|..|.. +-+..+|..+++......-....|.++....++.+.+. .. +-+.+++..+........
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEc
Confidence 4788887776654333443 34778888776543211112346888888888876554 34 457788875543211000
Q ss_pred -----CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------C----------CCCCeEEEEeCCCcE
Q psy8895 301 -----SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------T----------EESHPVITGSHDCTI 354 (479)
Q Consensus 301 -----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------~----------~~~~~l~sgs~d~~v 354 (479)
..-....|.++..+.++.. -.|+..| +.++...... . .....+-.|+.+| +
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l 345 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-L 345 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-E
T ss_pred CCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-c
Confidence 0112345888887776654 3444445 3333221100 0 0011233444443 4
Q ss_pred EEEECCCCe--eEEEEcc-------CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee--cC----CcceEEEE
Q psy8895 355 RLWDLAAGK--SLCTLTN-------HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL--PG----HNAIINSI 419 (479)
Q Consensus 355 ~iwd~~~~~--~~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~--~~----h~~~v~~l 419 (479)
..++..+++ ....+.. ....|.++.-.+++.+.++. .+.+..++..+++...-. .. ....|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 424 (758)
T 3ott_A 346 IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI 424 (758)
T ss_dssp EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEE
T ss_pred eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE
Confidence 555544321 1112210 12358999988888888766 567999998887664321 11 12458888
Q ss_pred EEcCCCEEEEEeCCCcEEEEecC
Q psy8895 420 CVNNEGVLVSGADNGTMCFWDWR 442 (479)
Q Consensus 420 ~~~~~~~l~sg~~dg~i~lWd~~ 442 (479)
+..+++.|-.|...+-+.++|.+
T Consensus 425 ~~d~~g~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 425 FEDTAGQLWISTCLGGIFVVDKH 447 (758)
T ss_dssp EECTTSEEEEEESSSCEEEEEHH
T ss_pred EEcCCCCEEEEECCCceEEEccc
Confidence 88888866667766667778754
No 339
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.68 E-value=20 Score=36.50 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=30.6
Q ss_pred ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec
Q psy8895 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG 259 (479)
Q Consensus 220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~ 259 (479)
..|.++.+ +..++++-+.|.++|+|++++++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666665 367999999999999999999988766543
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=54.50 E-value=1.2e+02 Score=26.93 Aligned_cols=130 Identities=10% Similarity=0.093 Sum_probs=62.6
Q ss_pred CCCcEEEEEeC-----C------CeEEEEECCCCceEEEEecCCcCE--EEEEEcCCCCEEEEEECC--------CcEEE
Q psy8895 229 PGNEWFATGSA-----D------KIIKVWDLATGKLKLSLTGHVGSV--RGLTVSPRHPYLFSCGDD--------RTVKC 287 (479)
Q Consensus 229 ~~g~~l~sgs~-----d------~~i~iWd~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d--------~~i~~ 287 (479)
.+++.++.|+. . ..+..||..+++.... .....+. .+++.. ++..++.||.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence 46777777773 1 1267888887754321 1111111 122222 45566666632 46888
Q ss_pred EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC-C-----CeEEEEeCCCCC-------C----------CCCCe
Q psy8895 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA-D-----KTVKLYKEDDSA-------T----------EESHP 344 (479)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~i~~~~~~~~~-------~----------~~~~~ 344 (479)
||+.+.+.............-..+. .+++.++.|+. + ..+..||..... . .....
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 199 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRI 199 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEE
T ss_pred ECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEE
Confidence 9987654322111111111111222 23455555554 2 356677755321 0 01234
Q ss_pred EEEEeCCC-----cEEEEECCCC
Q psy8895 345 VITGSHDC-----TIRLWDLAAG 362 (479)
Q Consensus 345 l~sgs~d~-----~v~iwd~~~~ 362 (479)
++.|+.++ .+.+||..+.
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEeccCCCCccceEEEEECCCC
Confidence 55666543 4778888765
No 341
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.70 E-value=12 Score=40.99 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~ 258 (479)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34555666788999999999999999999999887643
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=49.55 E-value=1.4e+02 Score=26.30 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=93.9
Q ss_pred CCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC
Q psy8895 240 DKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS 318 (479)
Q Consensus 240 d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (479)
|+.|..|..... ++-.. ......|..++...+...++ . |+.+..|-.......-.. ......|..++....
T Consensus 41 ~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~P--~~~~~~v~~ia~G~~-- 112 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTVP--AEARSGVDAIAAGAW-- 112 (282)
T ss_dssp TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCCC--GGGSSSEEEEEEETT--
T ss_pred CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCCC--cccCCCeEEEECcCC--
Confidence 777877865432 22111 11123566676655433333 4 899999976532211110 111235766765544
Q ss_pred EEEEEeCCCeEEEEeCCCCCC------CC---------CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC
Q psy8895 319 RLITTEADKTVKLYKEDDSAT------EE---------SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383 (479)
Q Consensus 319 ~l~~~~~d~~i~~~~~~~~~~------~~---------~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 383 (479)
..+.-. ++.+..|-...... .. ....+.-. |+.|..|-......+.........|..|+-...
T Consensus 113 hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~ 190 (282)
T 3qhy_B 113 ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF 190 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS
T ss_pred EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC
Confidence 333334 89999887543211 00 01111223 788888876543222211112345677765444
Q ss_pred CcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895 384 LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRT 443 (479)
Q Consensus 384 ~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~ 443 (479)
..+ +- .++.+..|=....-.+.........|..++......++.. ||++..|-...
T Consensus 191 hs~-al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 191 HSL-AL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp EEE-EE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTC
T ss_pred EEE-EE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCC
Confidence 333 33 4666888854332111100001123556665555655544 89999998664
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=49.22 E-value=1.8e+02 Score=27.66 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=34.0
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc-c-CCCC----CCCCCCeEEEEEeCC
Q psy8895 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP-V-QPGS----MDSESGIFSMTFDNS 316 (479)
Q Consensus 262 ~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~-~~~~----~~~~~~i~~~~~~~~ 316 (479)
..-+.|+|.|+|+++++-...+.|++++...+... . .... ...+..+..++++|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 35679999999987776443346888876433221 1 1111 113467888999985
No 344
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=49.16 E-value=1.5e+02 Score=26.86 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE--Eeeec---CCcceEEEEEEcCC----CEE-EEEeCC-----CcEEE
Q psy8895 374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKF--IQNLP---GHNAIINSICVNNE----GVL-VSGADN-----GTMCF 438 (479)
Q Consensus 374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~--~~~~~---~h~~~v~~l~~~~~----~~l-~sg~~d-----g~i~l 438 (479)
.-+.++|.|++.++++-..+.|.+++ +++. +..+. ........++++|+ +.| ++-..+ ..|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 45789999999999888777788888 4442 22222 12345788999997 544 333322 57777
Q ss_pred EecCCC
Q psy8895 439 WDWRTG 444 (479)
Q Consensus 439 Wd~~~~ 444 (479)
++...+
T Consensus 110 ~~~~~~ 115 (352)
T 2ism_A 110 LRHLGE 115 (352)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 887654
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=46.04 E-value=1.6e+02 Score=26.04 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=34.4
Q ss_pred CCcEEEEEeCC-------CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEEC------CCcEEEEECCCCC
Q psy8895 230 GNEWFATGSAD-------KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGD------DRTVKCWDLEYNK 294 (479)
Q Consensus 230 ~g~~l~sgs~d-------~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~------d~~i~~wd~~~~~ 294 (479)
+++.++.|+.+ ..+.++|+.+.+....-....... .+++. .++..++.||. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56777777754 357788988775433211111000 11222 35556666653 2458888987654
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.00 E-value=1.1e+02 Score=29.38 Aligned_cols=104 Identities=10% Similarity=0.032 Sum_probs=55.8
Q ss_pred EEEEEEcCCCc-EEEEEeCCCeEEEEECCCCc---eEEEEe-----c----CCcCEEEEEEcCC----CCEEEEEEC--C
Q psy8895 222 VRCVAVEPGNE-WFATGSADKIIKVWDLATGK---LKLSLT-----G----HVGSVRGLTVSPR----HPYLFSCGD--D 282 (479)
Q Consensus 222 v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~---~~~~~~-----~----h~~~v~~v~~~~~----~~~l~s~~~--d 282 (479)
=..|+|.|+|. .|+.+...|.|++++..... .+..+. + -......|+++|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 36789999996 45555778999999754321 112221 1 1345788999996 433343322 1
Q ss_pred ----------CcEEEEECCCC--C--------cccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895 283 ----------RTVKCWDLEYN--K--------APVQPGSMDSESGIFSMTFDNSGSRLITTEA 325 (479)
Q Consensus 283 ----------~~i~~wd~~~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 325 (479)
..|.-|.+... . .+............-.+.|.|++...++.+.
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 13444555321 0 0011000112234568999999976665443
No 347
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.01 E-value=96 Score=30.87 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=41.1
Q ss_pred EEEEEcCCCcEEEEEeCC------------CeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEE
Q psy8895 223 RCVAVEPGNEWFATGSAD------------KIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSC 279 (479)
Q Consensus 223 ~~~~~~~~g~~l~sgs~d------------~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~ 279 (479)
--|+|+|.|.+++.-..+ ..+.+.+..+++...-+.+.. .+++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 458999999977764432 245566777787766666654 479999999999887654
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=40.57 E-value=2.1e+02 Score=25.98 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=46.2
Q ss_pred CceEEEEEeCCCcEEEEEcCCcEEEEeCCCCe-EEeeec---CCcceEEEEEEcCC----CEEEEEeC----C----CcE
Q psy8895 373 KSVRSVALHPTLYMFASASPDNIKQWKCPEGK-FIQNLP---GHNAIINSICVNNE----GVLVSGAD----N----GTM 436 (479)
Q Consensus 373 ~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~-~~~~~~---~h~~~v~~l~~~~~----~~l~sg~~----d----g~i 436 (479)
..-+.++|.|++.++++-..+.|.+++ .+++ .+..+. ........++++|+ +.|..... + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346899999999999988877788887 4554 222222 12345788999987 64433322 3 567
Q ss_pred EEEecCCC
Q psy8895 437 CFWDWRTG 444 (479)
Q Consensus 437 ~lWd~~~~ 444 (479)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (354)
T 3a9g_A 108 IRGRLDGS 115 (354)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 77776644
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=40.25 E-value=86 Score=31.03 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=49.9
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCccc----------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Q psy8895 263 SVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNKAPV----------QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKL 331 (479)
Q Consensus 263 ~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 331 (479)
+-..+.++|||++++.++ .+.++.++|+++..... .....+..-+.+..+|+++|....+--.|..+--
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 346788999999988655 67899999987321100 0111223456788999999965556668888888
Q ss_pred EeCC
Q psy8895 332 YKED 335 (479)
Q Consensus 332 ~~~~ 335 (479)
|+.+
T Consensus 404 Wni~ 407 (638)
T 3sbq_A 404 WNME 407 (638)
T ss_dssp EEHH
T ss_pred Eecc
Confidence 8854
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=40.22 E-value=2.5e+02 Score=26.77 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=33.2
Q ss_pred CEEEEEEcCCCC-EEEEEECCCcEEEEECCCCC--cc-cCCC--CC-----CCCCCeEEEEEeCC
Q psy8895 263 SVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNK--AP-VQPG--SM-----DSESGIFSMTFDNS 316 (479)
Q Consensus 263 ~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~--~~-~~~~--~~-----~~~~~i~~~~~~~~ 316 (479)
.-+.|+|.|++. .++.+...|.|++++..... .. .... .. ..+..+..++++|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999985 34445688999999754221 11 1000 00 12467888999986
No 351
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=40.22 E-value=2.2e+02 Score=26.01 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=63.3
Q ss_pred EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EE----ecCCcCEEEEEEcCC----CCEEEEE--EC
Q psy8895 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SL----TGHVGSVRGLTVSPR----HPYLFSC--GD 281 (479)
Q Consensus 214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--~~----~~h~~~v~~v~~~~~----~~~l~s~--~~ 281 (479)
.+...-..-..++|.|+|.++++--..|.|++++..+++... .+ ..-......|+++|+ +.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 344444566899999999988776658999999876665421 11 112346789999995 4333332 24
Q ss_pred CCcEEEEECCCCC-----c-----ccCCCCCCCCCCeEEEEEeCCCCEEEEE
Q psy8895 282 DRTVKCWDLEYNK-----A-----PVQPGSMDSESGIFSMTFDNSGSRLITT 323 (479)
Q Consensus 282 d~~i~~wd~~~~~-----~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 323 (479)
++.|.-|.+.... . +..............+.|.|++...++.
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 4556666654311 0 0000000111223468899998766654
No 352
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=40.02 E-value=2.2e+02 Score=26.03 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=51.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
=.++.+++.-..+.--.+-|.|.++|+.++.++..-+-..++|...+.+....-++.....|.|..-.++.
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 34666777667888888999999999999999877665566776666555544556666777666655543
No 353
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=27.89 E-value=3.3e+02 Score=24.31 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=24.9
Q ss_pred CeEEEEECCCCceEEEEecCCc-CE-EEEEEcCCCCEEEEEEC------CCcEEEEEC
Q psy8895 241 KIIKVWDLATGKLKLSLTGHVG-SV-RGLTVSPRHPYLFSCGD------DRTVKCWDL 290 (479)
Q Consensus 241 ~~i~iWd~~~~~~~~~~~~h~~-~v-~~v~~~~~~~~l~s~~~------d~~i~~wd~ 290 (479)
..+.+||+.+.+....-..... .- .+++.. ++.+++.||. ...+..+|+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 5788999988755432111111 11 223333 4555566553 235666776
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.89 E-value=2.9e+02 Score=27.29 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=40.7
Q ss_pred cEEEEEEcCCCcEEEEEeC------------CCeEEEEECCCCceEEEEecC-CcCEEEEEEcCCCCEEEEE
Q psy8895 221 WVRCVAVEPGNEWFATGSA------------DKIIKVWDLATGKLKLSLTGH-VGSVRGLTVSPRHPYLFSC 279 (479)
Q Consensus 221 ~v~~~~~~~~g~~l~sgs~------------d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~ 279 (479)
.--.|.|.++|.+.+.... ...+...+..+++....+.+. ...++.++|+||++.|+..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3456899999987773322 125666677778776555543 3468999999999988765
No 355
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.72 E-value=3.6e+02 Score=24.02 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=90.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcccC------CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------
Q psy8895 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQ------PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------ 338 (479)
Q Consensus 271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------ 338 (479)
++..++++.+.+|.|+--.+..-+.... .........+..+........++..+..|.+..+....-.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 3455778888999998876643211110 0011223345454444556677777888877666532100
Q ss_pred ----------C---------------CCCCeEEEEeCCCcEEEEECCC-------CeeEEEEccCCCceEEEE-EeCCCc
Q psy8895 339 ----------T---------------EESHPVITGSHDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVA-LHPTLY 385 (479)
Q Consensus 339 ----------~---------------~~~~~l~sgs~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~-~~~~~~ 385 (479)
. .....++..+.+|.++.-.+.. +.....+.. .+.+-.+. ..++..
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 0 0234567778888888877642 222223333 33444443 344555
Q ss_pred EEEEEcCCcEEEEeCCC---------CeEEeeecCCcceEEEE-EEcCCCEEEEEeCCCcEEEEecC
Q psy8895 386 MFASASPDNIKQWKCPE---------GKFIQNLPGHNAIINSI-CVNNEGVLVSGADNGTMCFWDWR 442 (479)
Q Consensus 386 ~l~s~s~d~i~~w~~~~---------~~~~~~~~~h~~~v~~l-~~~~~~~l~sg~~dg~i~lWd~~ 442 (479)
++.....+....+...+ |.....+.. ...|-.+ .+.++..++..+..|..+...+.
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 66666666665555422 222333433 2334444 34445577788888998888764
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.61 E-value=4.7e+02 Score=25.03 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=51.7
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292 (479)
Q Consensus 222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~ 292 (479)
=.++.+++.-..+.--..-|.|.++|+.++.++..-+-...+|...+.+....-++.....|.|.--.++.
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 34677777777888889999999999999999877665566676666655555566666777666555543
Done!