RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8895
(479 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 195 bits (498), Expect = 6e-59
Identities = 99/280 (35%), Positives = 133/280 (47%), Gaps = 28/280 (10%)
Query: 211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS 270
L R + GH G V CVA P + ATGS D IKVWDL TG+L +L GH G VR + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-ESGIFSMTFDNSGSRLITTEADKTV 329
YL S D+T++ WDLE ++ S + S+ F G L ++ DKT+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLE---TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 330 KLYKEDD---SATEESHP--------------VITGSHDCTIRLWDLAAGKSLCTLTNHK 372
K++ + T H V + S D TI+LWDL GK + TLT H
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG 430
V SVA P S+S D IK W GK + L GH +NS+ + +G +L SG
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237
Query: 431 ADNGTMCFWDWRTGYNFQRLQ-----VRCVSGFPKPSVFF 465
+++GT+ WD RTG Q L V ++ P
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277
Score = 153 bits (388), Expect = 6e-43
Identities = 78/235 (33%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
+ R ++GH +V VA P ++ S DK IKVWD+ TGK +L GH V +
Sbjct: 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADK 327
SP ++ S D T+K WDL K V G + S+ F G +L
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTG---HTGEVNSVAFSPDGEKL------- 192
Query: 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
++ S D TI+LWDL+ GK L TL H+ V SVA P Y+
Sbjct: 193 ------------------LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 388 ASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
AS S D I+ W G+ +Q L GH + S+ + +G L SG+ +GT+ WD
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 152 bits (385), Expect = 2e-42
Identities = 100/377 (26%), Positives = 140/377 (37%), Gaps = 92/377 (24%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
R GH V ++ P +L T D T +VWD+ T + TL GHT + V A
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 86 SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
L + TIR W L+
Sbjct: 62 DGTY-----------------LASGS----------SDKTIRLWDLE------------- 81
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
V TL H ++S + S + +++ +++ + I W
Sbjct: 82 TGECVRTL------TGHTSYVSS--VAFSPDGRILSSSSRDKTIK-------------VW 120
Query: 206 HAPW-KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264
K + GH WV VA P + A+ S D IK+WDL TGK +LTGH G V
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-ESGIFSMTFDNSGSRLITT 323
+ SP L S D T+K WDL G++ E+G+ S+ F G L+
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDG-YLLA- 235
Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
+GS D TIR+WDL G+ + TL+ H SV S+A P
Sbjct: 236 -----------------------SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272
Query: 384 LYMFASASPDN-IKQWK 399
AS S D I+ W
Sbjct: 273 GKRLASGSADGTIRIWD 289
Score = 139 bits (353), Expect = 7e-38
Identities = 88/333 (26%), Positives = 132/333 (39%), Gaps = 78/333 (23%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
VWDL TG+L +L GH G VR ++ L + D T R+W
Sbjct: 35 VWDLETGELLRTLKGHTGPVR----------------DVAASADGTYLASGSSDKTIRLW 78
Query: 61 DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
D+ T V TLTGHT+ ++SV G +LS S
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPD------------------------GRILSS--SS 112
Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
D TI+ W + +C + TL R H +++ + S + V
Sbjct: 113 RD-KTIKVW--DVETGKC-----------LTTL------RGHTDWVNS--VAFSPDGTFV 150
Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
++S I+ + K ++GH G V VA P E + S+D
Sbjct: 151 -ASSSQDGTIKLWDLRT-----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300
IK+WDL+TGK +L GH V + SP L S +D T++ WDL VQ
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTL 257
Query: 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
S + + S+ + G RL + AD T++++
Sbjct: 258 SG-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 123 bits (308), Expect = 2e-30
Identities = 107/437 (24%), Positives = 176/437 (40%), Gaps = 80/437 (18%)
Query: 31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
GH S+ +I+ P ++L++ D T ++WD+ + +
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE------------KLIKSLEGLHDS 110
Query: 91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSV 150
+ L S + +L ++ GT++ W L + ++
Sbjct: 111 SVSKLALSSPDGNSILLASSSL----------DGTVKLWDLST-------PGKLIRTLEG 153
Query: 151 HTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWK 210
H+ SL + D +L+ + +S I K K
Sbjct: 154 HSESVTSLAFSPD-------------GKLLASGSSLDGTI-----------KLWDLRTGK 189
Query: 211 LYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLS-LTGHVGSVRGLT 268
++GH V +A P G A+GS+D I++WDL+TGKL S L+GH SV +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
SP L S D T++ WDL + + ++ S S S + S+ F G L + +D T
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDGT 307
Query: 329 VKLYKEDDSAT--------------------EESHPVITGSHDCTIRLWDLAAGKSLCTL 368
V+L+ + + S V GS D TIRLWDL GK L
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-KT 366
Query: 369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGV- 426
+V SV+ P + +S S D ++ W G ++NL GH + + S+ + +G
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426
Query: 427 LVSGADNGTMCFWDWRT 443
L SG+ + T+ WD +T
Sbjct: 427 LASGSSDNTIRLWDLKT 443
Score = 119 bits (299), Expect = 2e-29
Identities = 82/267 (30%), Positives = 124/267 (46%), Gaps = 26/267 (9%)
Query: 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGS-ADKIIKVWDLATGKLKLSLTGHVGSVRG 266
P KL R + GH V +A P + A+GS D IK+WDL TGK +L GH V
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203
Query: 267 LTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
L SP L S D T++ WDL K + ++ S +F GS L + +
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGK--LLRSTLSGHSDSVVSSFSPDGSLLASGSS 261
Query: 326 DKTVKLYKEDDSATE------------------ESHPVITGSHDCTIRLWDLAAGKSLCT 367
D T++L+ S++ + + +GS D T+RLWDL GK L +
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 368 LT--NHKKSVRSVALHPTLYMFASASPDN--IKQWKCPEGKFIQNLPGHNAIINSICVNN 423
LT H+ V S++ P + S D+ I+ W GK ++ L GH+ +++ +
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD 381
Query: 424 EGVLVSGADNGTMCFWDWRTGYNFQRL 450
V+ SG+ +GT+ WD TG + L
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNL 408
Score = 99.0 bits (245), Expect = 3e-22
Identities = 79/265 (29%), Positives = 112/265 (42%), Gaps = 39/265 (14%)
Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTG-HVGSVRGLTV-SP 271
+ GH + +A P E +GS+D IK+WDL G+ + SL G H SV L + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 272 RHPYLFSCG--DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
+ D TVK WDL ++ SES + S+ F G L +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLAS------- 172
Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFA 388
S D TI+LWDL GK L TL H V S+A P + A
Sbjct: 173 -----------------GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215
Query: 389 SASPDN-IKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYN 446
S S D I+ W GK +++ L GH+ + S + +L SG+ +GT+ WD R+ +
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
Query: 447 FQRL------QVRCVSGFPKPSVFF 465
R V V+ P +
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLA 300
Score = 79.4 bits (194), Expect = 8e-16
Identities = 73/330 (22%), Positives = 118/330 (35%), Gaps = 88/330 (26%)
Query: 1 VWDLATGKLKLSLTGHVGSVRGLT----------------VIRHY------------HGH 32
+WDL TGK +L GH V L IR + GH
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 33 LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKAN-VYTLTGHTNTIASVVTQASEPQVG 91
SV + S P +L + D T R+WD+R+ ++ + TL+GH++++
Sbjct: 242 SDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV------------- 287
Query: 92 TKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVH 151
+V +++ + G T+R W L+ + L L+
Sbjct: 288 -LSVAFSPDGKLLASGSSDG-------------TVRLWDLETGKLLSSLTLK-------- 325
Query: 152 TLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKL 211
H+ +S L S + L+ + S+ I+ W
Sbjct: 326 ---------GHEGPVSS--LSFSPDGSLLVSGGSDDGTIRL------------WDLRTGK 362
Query: 212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP 271
V V+ P ++GS D +++WDL+TG L +L GH V L SP
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422
Query: 272 RHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
L S D T++ WDL+ + V
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452
Score = 74.4 bits (181), Expect = 3e-14
Identities = 74/330 (22%), Positives = 124/330 (37%), Gaps = 51/330 (15%)
Query: 26 IRHYHGHLSSVNTISLHPTIDVLITAGR-DSTARVWDVRTKANVYTLTGHTNTIAS---- 80
IR GH SV +++ P +L + D T ++WD+RT + TL GHT+ ++S
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207
Query: 81 ------VVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDF------GTIRP 128
+ + +S+ + + R + + S P GTIR
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRL 267
Query: 129 WQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ 188
W L+ + ++ S H+ S+ + D L ++ T
Sbjct: 268 WDLRS-------SSSLLRTLSGHSSSVLSVAFSPD------------GKLLASGSSDGTV 308
Query: 189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATG-SADKIIKVWD 247
+ + L + GH G V ++ P +G S D I++WD
Sbjct: 309 RLWDLETGKLLSSLT-----------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
Query: 248 LATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG 307
L TGK +L GH +V ++ SP + S D TV+ WDL S
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-- 414
Query: 308 IFSMTFDNSGSRLITTEADKTVKLYKEDDS 337
+ S+ F G L + +D T++L+ S
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 47.7 bits (114), Expect = 9e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
+L + + GH G V VA P ++ A+GS D IK+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 47.3 bits (113), Expect = 1e-07
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 250 TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
+G+L +L GH G V + SP YL S DD T+K WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.1 bits (97), Expect = 2e-05
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
+++ GH V +++ P L + D T ++WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 403 GKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
G+ ++ L GH + S+ + +G L SG+D+GT+ WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.8 bits (83), Expect = 0.002
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWK 399
G+ L TL H V SVA P AS S D IK W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 27.7 bits (62), Expect = 1.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 305 ESGIFSMTFDNSGSRLITTEADKTVKLYK 333
+ S+ F G L + D T+KL+
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 345 VITGSHDCTIRLWD 358
+ +GS D TI+LWD
Sbjct: 27 LASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.7 bits (114), Expect = 1e-07
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
KL R + GH G V VA P A+GS D ++VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 47.0 bits (112), Expect = 2e-07
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
GKL +L GH G V + SP L S DD TV+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 42.7 bits (101), Expect = 6e-06
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
++R GH V +++ P ++L + D T RVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.6 bits (85), Expect = 0.001
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWK 399
GK L TL H V SVA P + AS S D ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 403 GKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
GK ++ L GH + S+ + +G +L SG+D+GT+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 28.1 bits (63), Expect = 0.90
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 345 VITGSHDCTIRLWD 358
+ +GS D T+R+WD
Sbjct: 26 LASGSDDGTVRVWD 39
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 305 ESGIFSMTFDNSGSRLITTEADKTVKLYK 333
+ S+ F G+ L + D TV+++
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 46.6 bits (110), Expect = 2e-05
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYN 293
A+ + + +++VWD+A +L + H V + S P L + G DD +VK W +
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608
Query: 294 KAPVQPGSMDSESGIFSMTF-DNSGSRLITTEAD----------------------KTVK 330
V G++ +++ I + F SG L AD KTV
Sbjct: 609 ---VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS 364
+ DS+T +++ S D T++LWDL+ S
Sbjct: 666 YVRFVDSST-----LVSSSTDNTLKLWDLSMSIS 694
Score = 33.5 bits (76), Expect = 0.31
Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 294 KAPVQPGSM-DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC 352
KA ++ G + +S + + ++ FD G T +K +K++ E +I D
Sbjct: 471 KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIF--------ECESIIKDGRDI 522
Query: 353 TIRLWDLAAGKSLCTL--TNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNL 409
+ +LA+ L + ++ KS AS++ + + Q W + + +
Sbjct: 523 HYPVVELASRSKLSGICWNSYIKS-----------QVASSNFEGVVQVWDVARSQLVTEM 571
Query: 410 PGHNAIINSICVN--NEGVLVSGADNGTMCFWDWRTGYNFQRLQVR---CVSGFPKPS 462
H + SI + + +L SG+D+G++ W G + ++ + C FP S
Sbjct: 572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629
Score = 30.8 bits (69), Expect = 1.7
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 234 FATGSADKIIKVWDLATGKLKL-SLTGH---VGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
A GSAD + +DL KL L ++ GH V VR + S L S D T+K WD
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST----LVSSSTDNTLKLWD 688
Query: 290 LEYNKAPVQPGSMDSESG 307
L + + + + S G
Sbjct: 689 LSMSISGINETPLHSFMG 706
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 44.9 bits (106), Expect = 7e-05
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 2 WDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPT-IDVLITAGRDSTARVW 60
W + L +++ I H GH V +S HP+ ++VL +AG D VW
Sbjct: 103 WGIPEEGLTQNISDP---------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153
Query: 61 DVRTKANVYTLTGHTNTIASV 81
DV V + H++ I S+
Sbjct: 154 DVERGKAVEVIKCHSDQITSL 174
Score = 36.8 bits (85), Expect = 0.025
Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 236 TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT----VSPRHP----YLFSCGDDRTVKC 287
T S D I W + L +++ + ++G T + HP L S G D V
Sbjct: 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152
Query: 288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS---ATEESHP 344
WD+E KA V+ S+ I S+ ++ GS L TT DK + + D ++ E+H
Sbjct: 153 WDVERGKA-VEVIKCHSDQ-ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210
Query: 345 VITGSHDCTIRLWDLAAGKSLC-TLTNHKKSVRSVALHPTLYMFASASPDNIKQ 397
S C LW A K L TL K R + L T M + S ++ Q
Sbjct: 211 S-AKSQRC---LW--AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258
Score = 31.0 bits (70), Expect = 1.5
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 215 ISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
+ GH V V+ P A+ AD ++ VWD+ GK + H + L +
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 274 PYLFSCGDDRTVKCWD 289
L + D+ + D
Sbjct: 181 SLLCTTSKDKKLNIID 196
>gnl|CDD|221182 pfam11715, Nup160, Nucleoporin Nup120/160. Nup120 is conserved
from fungi to plants to humans, and is homologous with
the Nup160 of vertebrates. The nuclear core complex, or
NPC, mediates macromolecular transport across the
nuclear envelope. Deletion of the NUP120 gene causes
clustering of NPCs at one side of the nuclear envelope,
moderate nucleolar fragmentation and slower cell growth.
The vertebrate NPC is estimated to contain between 30
and 60 different proteins. most of which are not known.
Two important ones in creating the nucleoporin basket
are Nup98 and Nup153, and Nup120, in conjunction with
Nup 133, interacts with these two and itself plays a
role in mRNA export. Nup160, Nup133, Nup96, and Nup107
are all targets of phosphorylation. The phosphorylation
sites are clustered mainly at the N-terminal regions of
these proteins, which are predicted to be natively
disordered. The entire Nup107-160 subcomplex is stable
throughout the cell cycle, thus it seems unlikely that
phosphorylation affects interactions within the
Nup107-160 subcomplex, but rather that it regulates the
association of the subcomplex with the NPC and other
proteins.
Length = 511
Score = 32.5 bits (74), Expect = 0.59
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 18 GSVRGLT-VIRHYHGHLSSVNTISLHPTI------DVLITAGRDSTARVWDVRTKANVYT 70
S+RGL R+ L+S S + L T D T RVW++ T +
Sbjct: 198 RSLRGLLPFQRYGKDRLASSAAASTIVSSSEVNGQTFLFTLSLDGTLRVWNLDTGQCAFL 257
>gnl|CDD|188567 TIGR04052, AZL_007920_fam, AZL_007920/MXAN_0976 family protein.
Members of this rare protein family regularly occur next
to a member of the MXAN_0977 subfamily (TIGR04039) of
the di-heme cytochrome c peroxidase/MauG family
(pfam03150). MauG itself (TIGR03791) is a protein
modification enzyme responsible for the tryptophan
tryptophylquinone (TTQ) modification involved in
methylamine dehydrogenase activation. All members of
this family have a motif of four spaced invariant Cys
residues, while additional homologs outside the scope of
this family lack the four Cys residues.
Length = 206
Score = 30.5 bits (69), Expect = 1.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 432 DNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFL 468
++ M FW W+ GY F R+ V + K + + L
Sbjct: 91 NDSGM-FWSWQQGYKFLRIDVSPNASVGKSTGWVVHL 126
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 31.1 bits (70), Expect = 1.6
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 231 NEWFATGSADKIIKVW-----DLATGKLK---LSLTGHVGSVRGLTVSPRHPYLF-SCGD 281
+E A+GS D I+VW D + ++K L GH + + +P + Y+ S G
Sbjct: 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146
Query: 282 DRTVKCWDLEYNKAPVQ 298
D V WD+E K Q
Sbjct: 147 DSFVNIWDIENEKRAFQ 163
Score = 30.7 bits (69), Expect = 1.9
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 347 TGSHDCTIRLWDLAAGKS--------LCTLTNHKKSVRSVALHP-TLYMFASASPDN-IK 396
+GS D TIR+W++ C L HKK + + +P Y+ S+ D+ +
Sbjct: 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151
Query: 397 QWKCPEGK--FIQNLPGHNAIINSICVNNEGVLVSG 430
W K F N+P ++S+ N +G L+SG
Sbjct: 152 IWDIENEKRAFQINMPKK---LSSLKWNIKGNLLSG 184
>gnl|CDD|235590 PRK05752, PRK05752, uroporphyrinogen-III synthase; Validated.
Length = 255
Score = 29.3 bits (66), Expect = 4.1
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQ 146
E C + L AG S LP LL I P Q L L
Sbjct: 13 EECAALAASLAEAGIFSSSLP-LLA---IEPLPETPEQRALLLELDRYC 57
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 29.2 bits (66), Expect = 4.7
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 21/79 (26%)
Query: 343 HPV---ITGSHDCTIRL--WDL--AAGKSL------CTLTNHKKSVRSVALHPTLYMFAS 389
HPV ITG I L L AAG+ L + H VR A P +
Sbjct: 297 HPVTEEITG-----IDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFF--- 348
Query: 390 ASPDNIKQWKCPEGKFIQN 408
SP I P G+ +++
Sbjct: 349 PSPGKITDLTLPGGEGVRH 367
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,394,761
Number of extensions: 2164270
Number of successful extensions: 1612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1534
Number of HSP's successfully gapped: 49
Length of query: 479
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 378
Effective length of database: 6,457,848
Effective search space: 2441066544
Effective search space used: 2441066544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)