BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8898
(1236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 250 bits (638), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 187/333 (56%), Gaps = 79/333 (23%)
Query: 504 ELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG------------------- 544
EL EA + G+ K+ L+ P VN + GRKSTPLH AAG
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 545 -----LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK-------ALLQH 592
LVPLHNACSYGHYEVTE+L+KHGA VN DLW+FTPLHEAA+K LL H
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 593 GADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGW 652
GAD L N GK+A+D+A EL E
Sbjct: 147 GADPTLVNCHGKSAVDMA------------PTPELRE----------------------- 171
Query: 653 CSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA 712
R+ EFKGH LL+A R+ D ++VKK L +++NFK P + +T LHCA
Sbjct: 172 -------------RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218
Query: 713 VTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDV 772
V S +PKRK + E L+RKGA++NEKNK+ + P+H+AA+ H DV++ L + GAK+N +D
Sbjct: 219 VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS 278
Query: 773 LGQTALHRTARDDKTQAVRVLLSHNADTSIVSL 805
LGQTALHR A Q R+LLS+ +D SI+SL
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 107/125 (85%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EVTE+L+K GA VNAMDLWQFTPLHEAASK+R+EVCSLLLS GADP
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
TL NCH KSA+D+APT EL++RL+ EFKGH LL+A R+ D ++VKK L +++NFK P +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 334 GDTPL 338
+T L
Sbjct: 211 HETAL 215
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 152/323 (47%), Gaps = 49/323 (15%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R +V+ LL GA +HA+D GGL PLHNACS+GH +V LLL+ A N D W FTP
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAA+K + +VC S L+HGADP L N
Sbjct: 128 LHEAASKNRVEVC-------------------------------SLLLSHGADPTLVNCH 156
Query: 121 GQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180
G++ +D+ ++R L ++ G S + A ++ T + ++ P +
Sbjct: 157 GKSAVDMAPTPELRERL---TYEFKG-HSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Query: 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALG----LVPLHNACSYGHFEVTEMLIKA 236
+ +V+ + P+ + +++ G V + PLH A H +V E+L K
Sbjct: 213 TALHCAVA---SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRL 296
GA +NA+D T LH AA L+ C LLLS G+DP++ + +A + +QQ L
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-NEAVQQIL 328
Query: 297 SNEFK------GHCLLEACRQGD 313
S + LLEA + GD
Sbjct: 329 SESTPMRTSDVDYRLLEASKAGD 351
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 138/308 (44%), Gaps = 82/308 (26%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G +AL +A ++K +L + +LLEA++ G+ + LL+ P VNC DGR
Sbjct: 4 GKSALDLADPSAKAVLTGEYK----KDELLEAARSGNEEKLMALLT--PLNVNCHASDGR 57
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKD----------------------------- 465
STPLH AAGYNRV +V+ LL HGADVH+KD
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXX---------------XXXXXXXXXXXXRE------ 504
NA D W FTPLHEAA K R + RE
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 505 ----LFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFA-AGLVPLHNACSYGHYEV 559
L +A + DL KVKK + + +N + + T LH A A L P +V
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE-TALHCAVASLHP-------KRKQV 229
Query: 560 TEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDGKTALDLAVP 612
E+L++ GANVN + TPLH AA +A L +HGA +N ++ G+TAL
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH---- 285
Query: 613 CTRAVLSG 620
RA L+G
Sbjct: 286 --RAALAG 291
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL--VREGD 1121
+KHGA VN DLW+FTPLHEAA+K + ++ LLL HGADP+ N G + +D+ E
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170
Query: 1122 QDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAG 1173
+ ++ +G+S LL AA++ +L +V+K L + IN + Q + T LH A
Sbjct: 171 ERLTYEFKGHS-LLQAAREADLAKVKKTLALEIINFKQPQS-HETALHCAVA 220
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 93/204 (45%), Gaps = 55/204 (26%)
Query: 603 GKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELM 662
GK+ALDLA P +AVL+G++K
Sbjct: 4 GKSALDLADPSAKAVLTGEYK--------------------------------------- 24
Query: 663 FMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTG--DTPLHCAVTSPYPKR 720
KDE LLEA R G+ ++ LT VN H G TPLH A R
Sbjct: 25 -----KDE-----LLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGY---NR 70
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
IV+ L++ GA ++ K+K L P+H A GH +V + LL+ GA VN +D+ T LH
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 781 TARDDKTQAVRVLLSHNADTSIVS 804
A ++ + +LLSH AD ++V+
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVN 154
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 1059 LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLV 1117
LTP NV N + +D K TPLH AA + IV+LLLQHGAD K++ G PL +
Sbjct: 44 LTPLNV----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Query: 1118 REGDQDVSDLLRGNSALLDA 1137
G +V++LL + A ++A
Sbjct: 100 SYGHYEVTELLLKHGACVNA 119
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 1110 GATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLH 1169
G + LDL + V LL+AA+ GN ++ LLT N+NC + GR STPLH
Sbjct: 4 GKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63
Query: 1170 LAAGEKR 1176
LAAG R
Sbjct: 64 LAAGYNR 70
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDV 1124
KHGA +N D T LH AA G RLLL +G+DPS + G T + E Q +
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI 327
Query: 1125 ---SDLLRGNSA---LLDAAKKGN 1142
S +R + LL+A+K G+
Sbjct: 328 LSESTPMRTSDVDYRLLEASKAGD 351
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
++ GANVN + TPLH AA + D++ +L +HGA + + G T L
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 206 PSGQAVALGLVP----LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLE 261
PS +AV G L A S ++ +L N +A D + TPLH AA +R+
Sbjct: 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR 72
Query: 262 VCSLLLSEGAD 272
+ LLL GAD
Sbjct: 73 IVQLLLQHGAD 83
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 375 GYTALQVAGENSKKLLQE--PPSVVDLESQLLEASKGGD 411
G+TA Q+ E +++L E P D++ +LLEASK GD
Sbjct: 313 GFTAAQMGNEAVQQILSESTPMRTSDVDYRLLEASKAGD 351
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 1079 TPLHEAAAK---GKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQDVSDLLRGNSAL 1134
T LH A A + + LLL+ GA+ ++KN+D TPL + E DV ++L + A
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 1135 LDA 1137
++A
Sbjct: 273 MNA 275
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 164 bits (415), Expect = 3e-40, Method: Composition-based stats.
Identities = 73/101 (72%), Positives = 86/101 (85%)
Query: 870 SQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWER 929
S GT+LIDL DDKEF +V EEMQ+TVREHRD G +GGIF+RYNI++IQKV N+KLWER
Sbjct: 27 SGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWER 86
Query: 930 YVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
Y HRR EV++EN A+ERMLFHGSPF+NAI+ KGFDERHA
Sbjct: 87 YTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHA 127
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 42/54 (77%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
GIYFAE+SSKSNQYVYGIGGGTGCP+HKDRSCY+ H F + G++ L +
Sbjct: 136 GIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFS 189
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 335 DTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKLL 390
+T GT+LIDL DDKEF +V EEMQ+TVREHRD G +GG Y L++ +KKL
Sbjct: 25 NTSGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLW 84
Query: 391 Q 391
+
Sbjct: 85 E 85
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 1176 RHLLMCRVTLGKSFLQFNAI 1195
R LL CRVTLGKSFLQF+A+
Sbjct: 172 RQLLFCRVTLGKSFLQFSAM 191
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 86/101 (85%)
Query: 870 SQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWER 929
S GT+LIDL DDKEF +V EEMQ+TVREHRD G +GGIF+RYNI++IQKV N+KLWER
Sbjct: 27 SGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWER 86
Query: 930 YVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
Y HRR EV++EN A+ERMLFHGSPF+NAI+ KGFDERHA
Sbjct: 87 YTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHA 127
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R LL CRVTLGKSFLQF+A+KMAH+PPGHHSV GRPS GL EYV+YRGEQ
Sbjct: 172 RQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQ 224
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVR 134
GIYFAE+SSKSNQYVYGIGGGTGCP+HKDRSCY+ H F + G++ L + +
Sbjct: 136 GIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAH 195
Query: 135 S 135
S
Sbjct: 196 S 196
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 335 DTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKLL 390
+T GT+LIDL DDKEF +V EEMQ+TVREHRD G +GG Y L++ +KKL
Sbjct: 25 NTSGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLW 84
Query: 391 Q 391
+
Sbjct: 85 E 85
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 85/98 (86%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
GT+LIDL DDKEF +V EEMQ+TVREHRD G +GGIF+RYNI++IQKV N+KLWERY H
Sbjct: 2 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTH 61
Query: 933 RRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
RR EV++EN A+ERMLFHGSPF+NAI+ KGFDERHA
Sbjct: 62 RRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHA 99
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R LL CRVTLGKSFLQF+A+KMAH+PPGHHSV GRPS GL EYV+YRGEQ
Sbjct: 144 RQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQ 196
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVR 134
GIYFAE+SSKSNQYVYGIGGGTGCP+HKDRSCY+ H F + G++ L + +
Sbjct: 108 GIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAH 167
Query: 135 S 135
S
Sbjct: 168 S 168
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 340 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKLLQ 391
GT+LIDL DDKEF +V EEMQ+TVREHRD G +GG Y L++ +KKL +
Sbjct: 2 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWE 57
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 149 bits (377), Expect = 7e-36, Method: Composition-based stats.
Identities = 66/98 (67%), Positives = 83/98 (84%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GGIF+RYN+IRIQKV N+KL ER+ H
Sbjct: 2 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCH 61
Query: 933 RRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
R+ EV++EN +ERMLFHGSPFINAI+ KGFDERHA
Sbjct: 62 RQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA 99
Score = 94.7 bits (234), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R +L CRVTLGKSFLQF+ +KMAHAPPGHHSV+GRPS GL + EYV+YRGEQ
Sbjct: 144 RQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQ 196
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 41/54 (75%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
GIYFAE+SSKSNQYVYGIGGGTGCP HKDRSCY+ H F + G++ L +
Sbjct: 108 GIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFS 161
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 340 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKL 389
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GG Y +++ +KKL
Sbjct: 2 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKL 55
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 149 bits (377), Expect = 7e-36, Method: Composition-based stats.
Identities = 66/98 (67%), Positives = 83/98 (84%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GGIF+RYN+IRIQKV N+KL ER+ H
Sbjct: 38 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCH 97
Query: 933 RRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
R+ EV++EN +ERMLFHGSPFINAI+ KGFDERHA
Sbjct: 98 RQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA 135
Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/53 (77%), Positives = 46/53 (86%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R +L CRVTLGKSFLQF+ IKMAHAPPGHHSV+GRPS GL + EYV+YRGEQ
Sbjct: 180 RQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQ 232
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 41/54 (75%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
GIYFAE+SSKSNQYVYGIGGGTGCP HKDRSCY+ H F + G++ L +
Sbjct: 144 GIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFS 197
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 340 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKL 389
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GG Y +++ +KKL
Sbjct: 38 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKL 91
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 149 bits (376), Expect = 9e-36, Method: Composition-based stats.
Identities = 66/98 (67%), Positives = 83/98 (84%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GGIF+RYN+IRIQKV N+KL ER+ H
Sbjct: 2 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCH 61
Query: 933 RRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHA 970
R+ EV++EN +ERMLFHGSPFINAI+ KGFDERHA
Sbjct: 62 RQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA 99
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/53 (77%), Positives = 46/53 (86%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R +L CRVTLGKSFLQF+ IKMAHAPPGHHSV+GRPS GL + EYV+YRGEQ
Sbjct: 144 RQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQ 196
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 41/54 (75%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
GIYFAE+SSKSNQYVYGIGGGTGCP HKDRSCY+ H F + G++ L +
Sbjct: 108 GIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFS 161
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 340 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG----YTALQVAGENSKKL 389
GT+L+DL +DKE+ +V EEMQ+T+REHRD G +GG Y +++ +KKL
Sbjct: 2 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKL 55
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 94/157 (59%), Gaps = 38/157 (24%)
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG------------------ 544
R+L EA K GD+ VKKL Q+VN RD GR+STPLHFAAG
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
Query: 545 ------LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQ 591
LVPLHNACSYGHYEV E+LVKHGA VNVADLWKFTPLHEAAAK LLQ
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 592 HGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELL 628
HGAD KN DG T LDL V GD ++LL
Sbjct: 132 HGADPTKKNRDGNTPLDL-------VKDGDTDIQDLL 161
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 65/71 (91%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
VKHGA VNVADLWKFTPLHEAAAKGK +I +LLLQHGADP+KKNRDG TPLDLV++GD D
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 156
Query: 1124 VSDLLRGNSAL 1134
+ DLLRG++AL
Sbjct: 157 IQDLLRGDAAL 167
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 75/140 (53%), Gaps = 33/140 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R VVEYLL GA +HA+D GGL PLHNACS+GH +V LL++ A N D W FTP
Sbjct: 54 YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 113
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAAAKGK ++C L HGADP KN++
Sbjct: 114 LHEAAAKGKYEIC-------------------------------KLLLQHGADPTKKNRD 142
Query: 121 GQTPLDLTV--AEDVRSLLQ 138
G TPLDL D++ LL+
Sbjct: 143 GNTPLDLVKDGDTDIQDLLR 162
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 68/116 (58%), Gaps = 31/116 (26%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
+ QLLEA+K GD+ V +L + VNCRD++GR STPLHFAAGYNRV+VVEYLL HGA
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 68
Query: 460 DVHSKD-----------------------------NATDKWGFTPLHEAAQKGRTQ 486
DVH+KD N D W FTPLHEAA KG+ +
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EV E+L+K GA VN DLW+FTPLHEAA+K + E+C LLL GADP
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 274 TLHNCHSKSAIDV 286
T N + +D+
Sbjct: 137 TKKNRDGNTPLDL 149
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKH-PYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA + GD VKK T VN + TPLH A R ++VE L++ GA +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---NRVSVVEYLLQHGADV 70
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ K+K L P+H A GH +V + L++ GA VN+ D+ T LH A K + ++LL
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 795 SHNAD 799
H AD
Sbjct: 131 QHGAD 135
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 1134 LLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKR 1176
LL+AAK G++ V+KL T ++NCRD +GR STPLH AAG R
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 56
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A Y V E L++ GA+V+A D PLH A S EV LL+ GA
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1069 NVNVADL--WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQDVS 1125
+VN D+ + TPLH AA + +V LLQHGAD K++ G PL + G +V+
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 1126 DLLRGNSALLDAA 1138
+LL + A+++ A
Sbjct: 94 ELLVKHGAVVNVA 106
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 415 VTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFT 474
V LL +VN DL TPLH AA + + + LL HGAD K ++ G T
Sbjct: 92 VAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQHGADPTKK----NRDGNT 145
Query: 475 PL 476
PL
Sbjct: 146 PL 147
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
P+H AA + V++ LL+ GA V+ D G LH + +L+ H A ++
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 106
Query: 804 SL 805
L
Sbjct: 107 DL 108
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 94/157 (59%), Gaps = 38/157 (24%)
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG------------------ 544
R+L EA K GD+ VKKL Q+VN RD GR+STPLHFAAG
Sbjct: 14 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 73
Query: 545 ------LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQ 591
LVPLHNACSYGHYEV E+LVKHGA VNVADLWKFTPLHEAAAK LLQ
Sbjct: 74 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 592 HGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELL 628
HGAD KN DG T LDL V GD ++LL
Sbjct: 134 HGADPTKKNRDGNTPLDL-------VKDGDTDIQDLL 163
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 71/77 (92%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
VKHGA VNVADLWKFTPLHEAAAKGK +I +LLLQHGADP+KKNRDG TPLDLV++GD D
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 158
Query: 1124 VSDLLRGNSALLDAAKK 1140
+ DLLRG++ALLDAAKK
Sbjct: 159 IQDLLRGDAALLDAAKK 175
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 75/140 (53%), Gaps = 33/140 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R VVEYLL GA +HA+D GGL PLHNACS+GH +V LL++ A N D W FTP
Sbjct: 56 YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 115
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAAAKGK ++C L HGADP KN++
Sbjct: 116 LHEAAAKGKYEIC-------------------------------KLLLQHGADPTKKNRD 144
Query: 121 GQTPLDLTV--AEDVRSLLQ 138
G TPLDL D++ LL+
Sbjct: 145 GNTPLDLVKDGDTDIQDLLR 164
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 68/116 (58%), Gaps = 31/116 (26%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
+ QLLEA+K GD+ V +L + VNCRD++GR STPLHFAAGYNRV+VVEYLL HGA
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 70
Query: 460 DVHSKD-----------------------------NATDKWGFTPLHEAAQKGRTQ 486
DVH+KD N D W FTPLHEAA KG+ +
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EV E+L+K GA VN DLW+FTPLHEAA+K + E+C LLL GADP
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 274 TLHNCHSKSAIDV 286
T N + +D+
Sbjct: 139 TKKNRDGNTPLDL 151
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKH-PYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA + GD VKK T VN + TPLH A R ++VE L++ GA +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---NRVSVVEYLLQHGADV 72
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ K+K L P+H A GH +V + L++ GA VN+ D+ T LH A K + ++LL
Sbjct: 73 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 795 SHNAD 799
H AD
Sbjct: 133 QHGAD 137
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 1134 LLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKR 1176
LL+AAK G++ V+KL T ++NCRD +GR STPLH AAG R
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 58
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A Y V E L++ GA+V+A D PLH A S EV LL+ GA
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1069 NVNVADL--WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQDVS 1125
+VN D+ + TPLH AA + +V LLQHGAD K++ G PL + G +V+
Sbjct: 36 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 1126 DLLRGNSALLDAA 1138
+LL + A+++ A
Sbjct: 96 ELLVKHGAVVNVA 108
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 415 VTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFT 474
V LL +VN DL TPLH AA + + + LL HGAD K ++ G T
Sbjct: 94 VAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQHGADPTKK----NRDGNT 147
Query: 475 PL 476
PL
Sbjct: 148 PL 149
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDL--WQFTPLHEAASKSRLEVCSLLLSEGAD--- 272
L A G E + L +VN D+ Q TPLH AA +R+ V LL GAD
Sbjct: 16 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 273 ------PTLHNCHSKSAIDVAPTRELQQRLSNE---FKGHCLLEACRQGDPSRVKKFLTS 323
LHN S +VA + N +K L EA +G K L
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 324 DVVNFKHPYTGDTPLP-----GTLLIDLLSDDKEFITVAEE 359
K G+TPL T + DLL D + A++
Sbjct: 135 GADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAALLDAAKK 175
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
P+H AA + V++ LL+ GA V+ D G LH + +L+ H A ++
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 108
Query: 804 SL 805
L
Sbjct: 109 DL 110
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 94/157 (59%), Gaps = 38/157 (24%)
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG------------------ 544
R+L EA K GD+ VKKL Q+VN RD GR+STPLHFAAG
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 545 ------LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQ 591
LVPLHNACSYGHYEV E+LVKHGA VNVADLWKFTPLHEAAAK LLQ
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 592 HGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELL 628
HGAD KN DG T LDL V GD ++LL
Sbjct: 130 HGADPTKKNRDGNTPLDL-------VKDGDTDIQDLL 159
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 65/71 (91%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
VKHGA VNVADLWKFTPLHEAAAKGK +I +LLLQHGADP+KKNRDG TPLDLV++GD D
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 154
Query: 1124 VSDLLRGNSAL 1134
+ DLLRG++AL
Sbjct: 155 IQDLLRGDAAL 165
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 75/140 (53%), Gaps = 33/140 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R VVEYLL GA +HA+D GGL PLHNACS+GH +V LL++ A N D W FTP
Sbjct: 52 YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 111
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAAAKGK ++C L HGADP KN++
Sbjct: 112 LHEAAAKGKYEIC-------------------------------KLLLQHGADPTKKNRD 140
Query: 121 GQTPLDLTV--AEDVRSLLQ 138
G TPLDL D++ LL+
Sbjct: 141 GNTPLDLVKDGDTDIQDLLR 160
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 68/116 (58%), Gaps = 31/116 (26%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
+ QLLEA+K GD+ V +L + VNCRD++GR STPLHFAAGYNRV+VVEYLL HGA
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66
Query: 460 DVHSKD-----------------------------NATDKWGFTPLHEAAQKGRTQ 486
DVH+KD N D W FTPLHEAA KG+ +
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EV E+L+K GA VN DLW+FTPLHEAA+K + E+C LLL GADP
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 274 TLHNCHSKSAIDV 286
T N + +D+
Sbjct: 135 TKKNRDGNTPLDL 147
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKH-PYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA + GD VKK T VN + TPLH A R ++VE L++ GA +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---NRVSVVEYLLQHGADV 68
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ K+K L P+H A GH +V + L++ GA VN+ D+ T LH A K + ++LL
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 795 SHNADTS 801
H AD +
Sbjct: 129 QHGADPT 135
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 1134 LLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKR 1176
LL+AAK G++ V+KL T ++NCRD +GR STPLH AAG R
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A Y V E L++ GA+V+A D PLH A S EV LL+ GA
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1069 NVNVADL--WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQDVS 1125
+VN D+ + TPLH AA + +V LLQHGAD K++ G PL + G +V+
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 1126 DLLRGNSALLDAA 1138
+LL + A+++ A
Sbjct: 92 ELLVKHGAVVNVA 104
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 415 VTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFT 474
V LL +VN DL TPLH AA + + + LL HGAD K ++ G T
Sbjct: 90 VAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQHGADPTKK----NRDGNT 143
Query: 475 PL 476
PL
Sbjct: 144 PL 145
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
P+H AA + V++ LL+ GA V+ D G LH + +L+ H A ++
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 804 SL 805
L
Sbjct: 105 DL 106
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 132/318 (41%), Gaps = 51/318 (16%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G +V +YLL + A ++A+ PLH A GH ++V+LLLE +ANPN TPL
Sbjct: 58 GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Query: 62 HEAAAKGKTDVCIGIYFAEHSS---------------------------KSNQYVYGIGG 94
H AA +G + + + E S + + + G
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 95 GTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAED----VRSLLQDAMA 142
P+H L G P G TPL + ++ RSLL
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL----- 232
Query: 143 QYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPP---TSPPQPLA 199
QY G+ + V P + + V+L Q +G+ G+ L P + +
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 200 LETVIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAA 255
+ V++ G V +G PLH A YG+ ++ + L++ A+VNA ++PLH+AA
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 352
Query: 256 SKSRLEVCSLLLSEGADP 273
+ ++ +LLL GA P
Sbjct: 353 QQGHTDIVTLLLKNGASP 370
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 166/434 (38%), Gaps = 102/434 (23%)
Query: 215 LVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPT 274
L PLH A GH + + L++ GA+ N ++ TPLH AA EV LL A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-- 72
Query: 275 LHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTG 334
++K+ D P HC A R G + VK L ++ G
Sbjct: 73 ---VNAKAKDDQTPL-------------HC---AARIGHTNMVKLLLENNANPNLATTAG 113
Query: 335 DTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPP 394
TPL I E + E +A+ + G+T L VA
Sbjct: 114 HTPLH----IAAREGHVETVLALLEKEAS----QACMTKKGFTPLHVA------------ 153
Query: 395 SVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYL 454
+K G + V LL H N +G TPLH A +N + +V+ L
Sbjct: 154 ------------AKYGKVRVAELLLERDAH-PNAAGKNGL--TPLHVAVHHNNLDIVKLL 198
Query: 455 LAHGADVHSKDNATDKW-GFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRE----LFEAC 509
L G HS W G+TPLH AA++ + + + L A
Sbjct: 199 LPRGGSPHSP-----AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 510 KGGDLTKVKKLVNPQTVNARDTAGRKS--TPLHFAA------------------------ 543
+ G V L++ Q A G KS TPLH A
Sbjct: 254 QEGHAEMVALLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADI 596
G PLH A YG+ ++ + L++H A+VN ++PLH+AA + LL++GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 597 NLKNTDGKTALDLA 610
N ++DG T L +A
Sbjct: 371 NEVSSDGTTPLAIA 384
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 166/435 (38%), Gaps = 86/435 (19%)
Query: 406 ASKGGDMTVVTRLLS--SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHS 463
AS G + +V LL + P++ N + TPLH AA V +YLL + A V
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKV-----ETPLHMAARAGHTEVAKYLLQNKAKV-- 73
Query: 464 KDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX----XXXXXXRELFEACKGGDLTKVKK 519
NA K TPLH AA+ G T L A + G + V
Sbjct: 74 --NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 520 LVNPQTVNARDTAGRKSTPLHFAA------------------------GLVPLHNACSYG 555
L+ + A T + TPLH AA GL PLH A +
Sbjct: 132 LLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 556 HYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALD 608
+ ++ ++L+ G + + +TPLH AA A++LLQ+G N ++ G T L
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 609 LAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIK 668
LA G + LL + + G ++G S + L+
Sbjct: 251 LAAQ------EGHAEMVALLLSKQANG-------------NLGNKSGLTPLHLV------ 285
Query: 669 DEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLI 728
++G + V+ G TPLH A S Y K +V+ L+
Sbjct: 286 -----------AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA--SHYGNIK-LVKFLL 331
Query: 729 RKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQ 788
+ A +N K K +P+H AA GH D++ LL+ GA N V G T L R
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 789 AVRVLLSHNADTSIV 803
VL +TS V
Sbjct: 392 VTDVLKVVTDETSFV 406
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 157/390 (40%), Gaps = 53/390 (13%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
TPLH A+ + +V+ LL GA N ++ TPLH AA+ G T+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS----PNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 497 XXXXXXRE----LFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
++ L A + G VK L+ N N TAG TPLH AA
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH--TPLHIAA-------- 121
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGK 604
GH E L++ A+ FTPLH AA A+ LL+ A N +G
Sbjct: 122 -REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 605 TALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFM 664
T L +AV H ++++ GG H W G T + + ++E+
Sbjct: 181 TPLHVAV---------HHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVA-- 228
Query: 665 PRIKDEFKGHCLLE----------ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVT 714
R ++ G E A ++G V L+ +G TPLH
Sbjct: 229 -RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287
Query: 715 SPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLG 774
+ + + LI+ G ++ + P+H+A+ G++ ++ LL+ A VN LG
Sbjct: 288 EGH---VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344
Query: 775 QTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+ LH+ A+ T V +LL + A + VS
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 114/269 (42%), Gaps = 24/269 (8%)
Query: 25 LHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSK 84
L PLH A GH +V+ LL+ A+PN + TPLH AA G T+V Y ++ +K
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA--KYLLQNKAK 72
Query: 85 SNQYVYGIGGGTGCPMHKDRS----CYLAHGADPFLKNQEGQTPLDLTV----AEDVRSL 136
N C + L + A+P L G TPL + E V +L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 137 LQDAMAQYPGAPSCAETASVPP---PSQYSNTSCGDNVSLPPPAQYSGSGGDSVS-LPPT 192
L+ +Q +C P ++Y + + L A + +G + ++ L
Sbjct: 133 LEKEASQ-----ACMTKKGFTPLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVA 186
Query: 193 SPPQPLALETVIMPSGQA----VALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQF 248
L + +++P G + G PLH A EV L++ G + NA +
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246
Query: 249 TPLHEAASKSRLEVCSLLLSEGADPTLHN 277
TPLH AA + E+ +LLLS+ A+ L N
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 110/260 (42%), Gaps = 48/260 (18%)
Query: 545 LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADIN 597
L PLH A GH + + L++ GA+ NV+++ TPLH AA AK LLQ+ A +N
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 598 LKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCC 657
K D +T L C AAR +G T++
Sbjct: 75 AKAKDDQTPLH----C----------------AAR------------IGHTNM----VKL 98
Query: 658 KMELMFMPRIKDEFKGHCLLE-ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSP 716
+E P + GH L A R+G V L + G TPLH A +
Sbjct: 99 LLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA--AK 155
Query: 717 YPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQT 776
Y K + + E L+ + AH N K L P+H+A +LD++ LL G + G T
Sbjct: 156 YGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 777 ALHRTARDDKTQAVRVLLSH 796
LH A+ ++ + R LL +
Sbjct: 215 PLHIAAKQNQVEVARSLLQY 234
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-REGDQ 1122
++H A+VN ++PLH+AA +G DIV LLL++GA P++ + DG TPL + R G
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 1123 DVSDLLR 1129
V+D+L+
Sbjct: 391 SVTDVLK 397
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 107/272 (39%), Gaps = 37/272 (13%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN-FT 59
YG+ V E LL A +A GL PLH A + D+V+LLL +P++ WN +T
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYT 214
Query: 60 PLHEAAAKGKTDVCIGI--YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLK 117
PLH AA + + +V + Y +++S Q V + + + L+ A+ L
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 118 NQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPP---PSQYSNTSCGDNVSLP 174
N+ G TPL L VA++ + D + ++ P S Y N +
Sbjct: 275 NKSGLTPLHL-VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL--- 330
Query: 175 PPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLI 234
Q+ L G PLH A GH ++ +L+
Sbjct: 331 --LQHQADVNAKTKL------------------------GYSPLHQAAQQGHTDIVTLLL 364
Query: 235 KAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
K GA+ N + TPL A + V +L
Sbjct: 365 KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-REGDQ 1122
+++G + N + TPLH AA +G A++V LLL A+ + N+ G TPL LV +EG
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291
Query: 1123 DVSDLLRGNSALLDAAKK------------GNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
V+D+L + ++DA + GN+ V+ LL ++N + G +PLH
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY--SPLH 349
Query: 1170 LAAGE 1174
AA +
Sbjct: 350 QAAQQ 354
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-REGDQDVSDLLRGNSALLD 1136
TPLH A+ G IV+ LLQ GA P+ N TPL + R G +V+ L N A ++
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 1137 AAKK---------GNLGRVQ--KLLTADNINCRDAQGRNSTPLHLAAGE 1174
A K +G KLL +N N A TPLH+AA E
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL-------- 1128
FTPLH AA GK + LLL+ A P+ ++G TPL + V + D+ LL
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 1129 ----RGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRV 1183
G + L AAK+ + + LL + N QG TPLHLAA E H M +
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG--VTPLHLAAQEG-HAEMVAL 263
Query: 1184 TLGK 1187
L K
Sbjct: 264 LLSK 267
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+KHG V+ +TPLH A+ G +V+ LLQH AD + K + G +PL ++G
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 1123 DVSDLLRGNSA 1133
D+ LL N A
Sbjct: 358 DIVTLLLKNGA 368
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL------------- 1114
A+ N A TPLH A DIV+LLL G P +G TPL
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 1115 DLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAG 1173
L++ G ++ ++G + L AA++G+ V LL+ N N + G TPLHL A
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL--TPLHLVAQ 287
Query: 1174 EKRHLLMCRVTLGKSFLQFNAIKMAHAP 1201
E H+ + V + + +M + P
Sbjct: 288 EG-HVPVADVLIKHGVMVDATTRMGYTP 314
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + H G TPLH A +P+ IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N ++ + P+HLAAD GHL++++ LL+ GA VN D G T LH A + V V
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL H AD + F S + G + L E+ ++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D G STPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K+GA+VN D + TPLH AA + LL
Sbjct: 74 NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
+HGAD+N ++ GKTA D+++
Sbjct: 134 KHGADVNAQDKFGKTAFDISI 154
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 82/177 (46%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G STPLH AA +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV+++D TD W TPLH AA G E+ E
Sbjct: 70 GADVNARD--TDGW--TPLHLAADNGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L VNA+D A GL PLH A GH E+ E+L+KHGA+VN D
Sbjct: 100 --LKYGADVNAQD-----------AYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD G PLH A GH ++V +LL+ A+ N RD +TPL
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--KDR------SCYLAHGAD 113
H AA G ++ + + + + Q YG+ P+H DR L HGAD
Sbjct: 85 HLAADNGHLEI-VEVLLKYGADVNAQDAYGL-----TPLHLAADRGHLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA D + TPLH AA + LE+ +LL GAD
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA D +TPLH AA LE+ +LL GAD
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 274 TLHNCHSKSAIDVAPTR 290
+ + + + +A R
Sbjct: 107 NAQDAYGLTPLHLAADR 123
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL+HGAD + ++ DG TPL L
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N +DA G TPLHLAA ++ HL +
Sbjct: 87 -------------AADNGHLEIVEVLLKYGADVNAQDAYGL--TPLHLAA-DRGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D + TPLH AA +G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+KHGA+VN D +TPLH AA G +IV +LL++GAD + ++ G TPL L
Sbjct: 67 LKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL------- 119
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA +G+L V+ LL ++N +D G+ + + + G +
Sbjct: 120 -------------AADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 71/183 (38%), Gaps = 39/183 (21%)
Query: 302 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQ 361
G LLEA R G V+ + + H G TPL I E + V +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI----GHPEIVEVLLKHG 70
Query: 362 ATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSS 421
A V RD + G+T L +A +N G + +V LL
Sbjct: 71 ADVNA-RD---TDGWTPLHLAADN------------------------GHLEIVEVLLKY 102
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
VN +D G TPLH AA + +VE LL HGADV NA DK+G T +
Sbjct: 103 GAD-VNAQDAYGL--TPLHLAADRGHLEIVEVLLKHGADV----NAQDKFGKTAFDISID 155
Query: 482 KGR 484
G
Sbjct: 156 NGN 158
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
A GL PLH A GH E+ E+L+K GA+VNA D + T + ++ +L
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
A G + +L+ GA+VNA D TPLH AA E+ +LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D +G+ TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDDSGK--TPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A YGH E+ E+L+K+GA+VN D + FTPLH AA + LL
Sbjct: 74 NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KYGADVNAQDKFGKTAFDISI 154
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 82/184 (44%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G+ TPLH AA + +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNAEDDSGK--TPLHLAAIKGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA DK G TPLH AA G E+ E
Sbjct: 70 GADV----NAADKMGDTPLHLAALYGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L N VNA DT G PLH A GH E+ E+L+K+GA+VN D +
Sbjct: 100 --LKNGADVNATDT-----------YGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + +G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N +K P+HLAA GHL++++ LL+ GA VN D G T LH A + V V
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S + G + L E+ ++
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+G PLH A YGH E+ E+L+K GA+VNA D + FTPLH AA LE+ +LL GAD
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 273 PTLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 139 VNAQDKFGKTAFDIS 153
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD G PLH A GH ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G ++ + + + + YG P+H + L +GAD
Sbjct: 85 HLAALYGHLEI-VEVLLKNGADVNATDTYGF-----TPLHLAADAGHLEIVEVLLKYGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ E+L+K GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D + FTPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 24/121 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
+GA+VN D TPLH AA KG +IV +LL+HGAD + ++ G TPL L
Sbjct: 36 NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL--------- 86
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
AA G+L V+ LL ++N D G TPLHLAA + HL + V
Sbjct: 87 -----------AALYGHLEIVEVLLKNGADVNATDTYG--FTPLHLAA-DAGHLEIVEVL 132
Query: 1185 L 1185
L
Sbjct: 133 L 133
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG ++VE LL +GA ++A D G PLH A GH ++V +LL+ A+ N +D + T
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 61 LHEAAAKGKTDVC 73
+ G D+
Sbjct: 150 FDISIDNGNEDLA 162
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+KHGA+VN AD TPLH AA G +IV +LL++GAD + + G TPL L
Sbjct: 67 LKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHL------- 119
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA G+L V+ LL ++N +D G+ + + + G +
Sbjct: 120 -------------AADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA K LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G + +V LL + VN D G TPLH AA + +VE LL +GADV NA D
Sbjct: 91 GHLEIVEVLLKNGAD-VNATDTYGF--TPLHLAADAGHLEIVEVLLKYGADV----NAQD 143
Query: 470 KWGFTPLHEAAQKGR 484
K+G T + G
Sbjct: 144 KFGKTAFDISIDNGN 158
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N D+ TPLH AA KG ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIV-------------- 63
Query: 88 YVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
L HGAD ++ G TPL L
Sbjct: 64 -----------------EVLLKHGADVNAADKMGDTPLHLA 87
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D +G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+KHGA+VN D W TPLH AA + LL
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
+HGAD+N ++ GKTA D+++
Sbjct: 134 KHGADVNAQDKFGKTAFDISI 154
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 81/177 (45%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA Y + +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA G E+ E
Sbjct: 70 GADV----NAIDIMGSTPLHLAALIGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L + VNA DT G TPLH AA GH E+ E+L+KHGA+VN D
Sbjct: 100 --LKHGADVNAVDTWG--DTPLHLAA---------IMGHLEIVEVLLKHGADVNAQD 143
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + +G TPLH A T + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + P+HLAA +GHL++++ LL+ GA VN VD G T LH A + V V
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL H AD + F S + G + L E+ ++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+G PLH A GH E+ E+L+K GA+VNA+D W TPLH AA LE+ +LL GAD
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 273 PTLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 139 VNAQDKFGKTAFDIS 153
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V A GL PLH A +YGH E+ E+L+K GA+VNA+D+ TPLH AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKHGAD 105
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D GL PLH A ++GH ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G ++ E K V + P+H + L HGAD
Sbjct: 85 HLAALIGHLEIV------EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D W TPLH AA G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL+HGAD + + G+TPL L
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAA 1172
AA G+L V+ LL ++N D G TPLHLAA
Sbjct: 87 -------------AALIGHLEIVEVLLKHGADVNAVDTWG--DTPLHLAA 121
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVR-EGDQ 1122
+KHGA+VN D+ TPLH AA G +IV +LL+HGAD + + G TPL L G
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L + A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKHGADVNAQDK--FGKTAFDISIDNGN 158
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA+ LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G + +V LL H + +D TPLH AA + +VE LL HGADV NA D
Sbjct: 91 GHLEIVEVLLK---HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV----NAQD 143
Query: 470 KWGFTPLHEAAQKGR 484
K+G T + G
Sbjct: 144 KFGKTAFDISIDNGN 158
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N D TPLH AA G ++ +H + N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV--EVLLKHGADVN- 74
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDL 127
I G T P+H + L HGAD + G TPL L
Sbjct: 75 -AIDIMGST--PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLV 807
AA G D + L+ GA VN D G T LH A + V VLL H AD + + ++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM- 79
Query: 808 IFSCSTNLGLKHLLELFEREQITLDILAEMNHED 841
ST L L L+ E ++ L A++N D
Sbjct: 80 ---GSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D +G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+KHGA+VN D W TPLH AA + LL
Sbjct: 74 NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
+HGAD+N ++ GKTA D+++
Sbjct: 134 KHGADVNAQDKFGKTAFDISI 154
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 81/177 (45%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA Y + +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA G E+ E
Sbjct: 70 GADV----NAIDIXGSTPLHLAALIGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L + VNA DT G TPLH AA GH E+ E+L+KHGA+VN D
Sbjct: 100 --LKHGADVNAVDTWG--DTPLHLAA---------IMGHLEIVEVLLKHGADVNAQD 143
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + +G TPLH A T + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + P+HLAA +GHL++++ LL+ GA VN VD G T LH A + V V
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL H AD + F S + G + L E+ ++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA+D W TPLH AA LE+ +LL GAD
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V A GL PLH A +YGH E+ E+L+K GA+VNA+D+ TPLH AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKHGAD 105
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D GL PLH A ++GH ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G ++ E K V + P+H + L HGAD
Sbjct: 85 HLAALIGHLEIV------EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D W TPLH AA G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL+HGAD + + G+TPL L
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N D G TPLHLAA HL +
Sbjct: 87 -------------AALIGHLEIVEVLLKHGADVNAVDTWG--DTPLHLAA-IMGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVR-EGDQ 1122
+KHGA+VN D+ TPLH AA G +IV +LL+HGAD + + G TPL L G
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L + A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKHGADVNAQDK--FGKTAFDISIDNGN 158
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA+ LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G + +V LL H + +D TPLH AA + +VE LL HGADV NA D
Sbjct: 91 GHLEIVEVLLK---HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV----NAQD 143
Query: 470 KWGFTPLHEAAQKGR 484
K+G T + G
Sbjct: 144 KFGKTAFDISIDNGN 158
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N D TPLH AA G ++ +H + N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIV--EVLLKHGADVN- 74
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDL 127
I G T P+H + L HGAD + G TPL L
Sbjct: 75 -AIDIXGST--PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLV 807
AA G D + L+ GA VN D G T LH A + V VLL H AD + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-- 78
Query: 808 IFSCSTNLGLKHLLELFEREQITLDILAEMNHED 841
ST L L L+ E ++ L A++N D
Sbjct: 79 --XGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 50/168 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GADV NATD G+TPLH AA G E+ E
Sbjct: 30 VRILMANGADV----NATDNDGYTPLHLAASNGHL------------------EIVEVL- 66
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA D G+ PLH A + GH E+ E+L+KHGA+V
Sbjct: 67 ---------LKNGADVNASDL-----------TGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N D TPLH AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A ++ + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLE---IVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + + P+HLAA GHL++++ LL+ GA VN D G T LH A+ + V V
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
LL H AD + F S + G + L E+ +
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D+ G PLH A S GH ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AAA G ++ +H + N Y P+H + L HGAD
Sbjct: 85 HLAAATGHLEIV--EVLLKHGADVNAY----DNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVAL----GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A S GH E+ E+L+K GA+VNA DL TPLH AA+
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKHGAD 105
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A + GH E+ E+L+K GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+K+GA+VN +DL TPLH AAA G +IV +LL+HGAD + + DG TPL L
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL------- 119
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AAK G+L V+ LL ++N +D G+ + + + G +
Sbjct: 120 -------------AAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D +TPLH AA+ G +IV +LL++GAD + + G TPL L
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N D G TPLHLAA + HL +
Sbjct: 87 -------------AAATGHLEIVEVLLKHGADVNAYDNDGH--TPLHLAA-KYGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 375 GYTALQVAGENS-----KKLLQEPPSV--VDLE--SQLLEASKGGDMTVVTRLLSSCPHI 425
GYT L +A N + LL+ V DL + L A+ G + +V LL
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD- 105
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
VN D DG TPLH AA Y + +VE LL HGADV NA DK+G T + G
Sbjct: 106 VNAYDNDGH--TPLHLAAKYGHLEIVEVLLKHGADV----NAQDKFGKTAFDISIDNGN 158
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
A G + +L+ GA+VNA D +TPLH AAS LE+ +LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G D VR+L+ A+ N DN +TPLH AA+ G ++ + + + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEI-VEVLLKNGADVNASDLT 79
Query: 91 GIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDL 127
GI P+H + L HGAD + +G TPL L
Sbjct: 80 GI-----TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 81/168 (48%), Gaps = 50/168 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GADV NATD G TPLH AA G+ E+ E
Sbjct: 22 VRILMANGADV----NATDDNGLTPLHLAAANGQL------------------EIVEVL- 58
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA D+AG + PLH A GH E+ E+L+KHGA+V
Sbjct: 59 ---------LKNGADVNASDSAG-----------ITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N D +TPLH AA + LL+HGAD+N ++ G TA D+++
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA G V+ + + G TPLH A + + IVE L++ GA
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLE---IVEVLLKNGA 63
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + + P+HLAA GHL++++ LL+ GA VN D G T LH A + + V V
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 793 LLSHNADTSIVSL--LVIFSCSTNLGLKHLLELFE 825
LL H AD + L F S N G + L E+ +
Sbjct: 124 LLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 82/184 (44%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA+ G V R+L + VN D +G TPLH AA ++ +VE LL +
Sbjct: 5 DLGKKLLEAAAAGQDDEV-RILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKN 61
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA+D G TPLH AA G E+ E
Sbjct: 62 GADV----NASDSAGITPLHLAAYDGHL------------------EIVEVL-------- 91
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L + VNA D AG TPLH AA G E+ E+L+KHGA+VN D
Sbjct: 92 --LKHGADVNAYDRAGW--TPLHLAA---------LSGQLEIVEVLLKHGADVNAQDALG 138
Query: 578 FTPL 581
T
Sbjct: 139 LTAF 142
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD GL PLH A + G ++V +LL+ A+ N D+ TPL
Sbjct: 17 GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPL 76
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G ++ +H + N Y G T P+H + L HGAD
Sbjct: 77 HLAAYDGHLEIV--EVLLKHGADVN--AYDRAGWT--PLHLAALSGQLEIVEVLLKHGAD 130
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
++ G T D+++ ED+ +LQ
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A GH E+ E+L+K GA+VNA D +TPLH AA +LE+ +LL GAD
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 274 TLHNCHSKSAIDVAPTR 290
+ +A D++ +
Sbjct: 132 NAQDALGLTAFDISINQ 148
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
GL PLH A + G E+ E+L+K GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+K+GA+VN +D TPLH AA G +IV +LL+HGAD + +R G TPL L
Sbjct: 59 LKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL------- 111
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA G L V+ LL ++N +DA G + + + G++
Sbjct: 112 -------------AALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQE 151
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
L EAAA G+ D VR+L+ +GAD + + +G TPL L AA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHL--------------------AAAN 49
Query: 1141 GNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTLGKSFLQFNAIKMAH 1199
G L V+ LL ++N D+ G TPLHLAA + HL + V L K NA A
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGI--TPLHLAAYDG-HLEIVEVLL-KHGADVNAYDRAG 105
Query: 1200 APPGHHSVMGRPSSGGLYFPEYVVYRGEQV 1229
P H + + SG L E ++ G V
Sbjct: 106 WTPLHLAAL----SGQLEIVEVLLKHGADV 131
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A + G + +L+ GA+VNA D TPLH AA+ +LE+ +LL GAD
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + +V LL VN D G TPLH AA ++ +VE LL HGADV
Sbjct: 79 AAYDGHLEIVEVLLKHGAD-VNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGADV---- 131
Query: 466 NATDKWGFTPLHEAAQKGR 484
NA D G T + +G+
Sbjct: 132 NAQDALGLTAFDISINQGQ 150
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A + G D VR+L+ A+ N D+ TPLH AAA G+ ++ + + + +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEI-VEVLLKNGADVNAS 68
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLT 128
GI P+H + L HGAD ++ G TPL L
Sbjct: 69 DSAGI-----TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
G PLH A G E+ E+L+K GA+VNA D T + ++ + ++ +L
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D AG + PLH A GH E+ E
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAG-----------VTPLHLAAKRGHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+KHGA+VN +D+W TPLH AA + LL++GAD+N ++ GKTA D+++
Sbjct: 65 VLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A GH E+ E+L+K GA+VNA D+W TPLH AA+ LE+ +LL GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD G+ PLH A GH ++V +LL+ A+ N D W TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G ++ L +GAD +++ G
Sbjct: 85 HLAATVGHLEIV-------------------------------EVLLEYGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N + P+HLAA +GHL++++ LL GA VN D G+TA
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN +D+W TPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL H
Sbjct: 13 DLGKKLLEATRAGQDDEV-RILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA+D WG TPLH AA G +
Sbjct: 70 GADV----NASDIWGRTPLHLAATVGHLE 94
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N + + P+HLAA GHL++++ LL+ GA VN D+ G+T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL + AD + F S + G + L E+ ++
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNAMD TPLH AA + LE+ +LL GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 278 CHSKSAIDVAPT 289
++ + +A T
Sbjct: 78 IWGRTPLHLAAT 89
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+GA+VN D TPLH AA +G +IV +LL+HGAD + + G TPL L
Sbjct: 36 NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHL 86
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+K G + +V LL VN D+ GR TPLH AA + +VE LL +GADV
Sbjct: 54 AAKRGHLEIVEVLLKHGAD-VNASDIWGR--TPLHLAATVGHLEIVEVLLEYGADV---- 106
Query: 466 NATDKWGFTPLHEAAQKG 483
NA DK+G T + G
Sbjct: 107 NAQDKFGKTAFDISIDNG 124
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 26/114 (22%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EA G+ D VR+L+ +GAD + + G TPL L
Sbjct: 12 SDLGK--KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
AAK+G+L V+ LL ++N D GR TPLHLAA HL + V L
Sbjct: 54 ----AAKRGHLEIVEVLLKHGADVNASDIWGR--TPLHLAA-TVGHLEIVEVLL 100
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 752 GHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
G D + L+ GA VN +D G T LH A+ + V VLL H AD +
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + + + G TPLH V + + + I+E L++ A
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLE---IIEVLLKYAA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N +K P+HLAA GHL++++ LL+ GA VN +D G T LH A D + V V
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S + G + L E+ ++
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 78/168 (46%), Gaps = 50/168 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GADV NA D +G TPLH G E+ E
Sbjct: 30 VRILMANGADV----NANDWFGITPLHLVVNNGHL------------------EIIEVL- 66
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L VNA D +G TPLH AA GH E+ E+L+K+GA+V
Sbjct: 67 ---------LKYAADVNASDKSGW--TPLHLAA---------YRGHLEIVEVLLKYGADV 106
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N D +TPLH AA + LL++GAD+N ++ GKTA D+++
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNAMD +TPLH AA LE+ +LL GAD
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 79/177 (44%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH + ++E LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNANDWFG--ITPLHLVVNNGHLEIIEVLLKY 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
ADV NA+DK G+TPLH AA +G E+ E
Sbjct: 70 AADV----NASDKSGWTPLHLAAYRGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L VNA D G TPLH AA GH E+ E+L+K+GA+VN D
Sbjct: 100 --LKYGADVNAMDYQGY--TPLHLAA---------EDGHLEIVEVLLKYGADVNAQD 143
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G+ PLH + GH E+ E+L+K A+VNA D +TPLH AA +
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKYGAD 105
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D G+ PLH + GH +++ +LL+ A+ N D +TPL
Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G ++ ++ + N Y G T P+H + L +GAD
Sbjct: 85 HLAAYRGHLEIV--EVLLKYGADVNAMDY--QGYT--PLHLAAEDGHLEIVEVLLKYGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D + TPLH G +I+ +LL++ AD + ++ G TPL L
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA +G+L V+ LL ++N D QG TPLHLAA E HL +
Sbjct: 87 -------------AAYRGHLEIVEVLLKYGADVNAMDYQGY--TPLHLAA-EDGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+K+ A+VN +D +TPLH AA +G +IV +LL++GAD + + G TPL L E G
Sbjct: 67 LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKYGADVNAQDK--FGKTAFDISIDNGN 158
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 39/183 (21%)
Query: 302 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQ 361
G LLEA R G V+ + + + + G TPL L+++ + E I V +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLH--LVVN--NGHLEIIEVLLKYA 70
Query: 362 ATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSS 421
A V G+T L +A + G + +V LL
Sbjct: 71 ADVNA----SDKSGWTPLHLA------------------------AYRGHLEIVEVLLKY 102
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
VN D G TPLH AA + +VE LL +GADV NA DK+G T +
Sbjct: 103 GAD-VNAMDYQGY--TPLHLAAEDGHLEIVEVLLKYGADV----NAQDKFGKTAFDISID 155
Query: 482 KGR 484
G
Sbjct: 156 NGN 158
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNA D + TPLH + LE+ +LL AD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 278 CHSKSAIDVAPTR 290
+ + +A R
Sbjct: 78 KSGWTPLHLAAYR 90
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC-IGIYFAEHSSKSN 86
L A G D VR+L+ A+ N D + TPLH G ++ + + +A + S+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 87 QYVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQ 138
+ + P+H + L +GAD + +G TPL L AED +
Sbjct: 78 KSGW-------TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA-AEDGHLEIV 129
Query: 139 DAMAQYPGAPSCAE 152
+ + +Y GA A+
Sbjct: 130 EVLLKY-GADVNAQ 142
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + + + G TPLH A + + IVE L+R GA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLE---IVEVLLRNGA 59
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + P+HLAA LGHL++++ LL+ GA VN D G T L+ A + V V
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
LL H AD + F S ++G + L E+ +
Sbjct: 120 LLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 81/170 (47%), Gaps = 50/170 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GAD NA D +G TPLH AA G E+ E
Sbjct: 18 VRILMANGADA----NAYDHYGRTPLHMAAAVGHL------------------EIVEVL- 54
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA DT G +TPLH AA S GH E+ E+L+K+GA+V
Sbjct: 55 ---------LRNGADVNAVDTNG--TTPLHLAA---------SLGHLEIVEVLLKYGADV 94
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPC 613
N D TPL+ AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 82/184 (44%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + N D GR TPLH AA + +VE LL +
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADANAYDHYGR--TPLHMAAAVGHLEIVEVLLRN 57
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA G E+ E
Sbjct: 58 GADV----NAVDTNGTTPLHLAASLGHL------------------EIVEVL-------- 87
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA+D A G+ PL+ A +GH E+ E+L+KHGA+VN D +
Sbjct: 88 --LKYGADVNAKD-----------ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 578 FTPL 581
T
Sbjct: 135 KTAF 138
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S GH E+ E+L+K GA+VNA D TPL+ AA LE+ +LL GAD
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 128 NAQDKFGKTAFDIS 141
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A + GH E+ E+L++ GA+VNA+D TPLH AAS LE+ +LL GAD
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD- 93
Query: 274 TLHNCHSKSAIDVAP 288
++K A + P
Sbjct: 94 ----VNAKDATGITP 104
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE LL +GA ++A D G PLH A S GH ++V +LL+ A+ N +D TPL
Sbjct: 46 GHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
+ AA G ++ L HGAD +++ G
Sbjct: 106 YLAAYWGHLEIV-------------------------------EVLLKHGADVNAQDKFG 134
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 135 KTAFDISIDIGNEDLAEILQ 154
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+ N D + TPLH AAA G +IV +LL++GAD + + +G TPL L
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHL------- 74
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAA 1172
AA G+L V+ LL ++N +DA G TPL+LAA
Sbjct: 75 -------------AASLGHLEIVEVLLKYGADVNAKDATG--ITPLYLAA 109
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D TPL+ AA G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 88 LKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNE 147
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 148 DLAEILQ 154
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+++GA+VN D TPLH AA+ G +IV +LL++GAD + K+ G TPL L
Sbjct: 55 LRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL------- 107
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA G+L V+ LL ++N +D G+ + + + G +
Sbjct: 108 -------------AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNE 147
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMD 244
A G+ PL+ A +GH E+ E+L+K GA+VNA D
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+ NA D + TPLH AA+ LE+ +LL GAD
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N D++ TPLH AAA G ++ E ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIV------EVLLRNGA 59
Query: 88 YVYGIGGGTGCPMHKDRS--------CYLAHGADPFLKNQEGQTPLDL 127
V + P+H S L +GAD K+ G TPL L
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL 107
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 80/168 (47%), Gaps = 43/168 (25%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
+ L EA + G+ +VK L+ N VNA D+ GR TPLH+AA
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGADV 63
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ ++L+ GA+VN D TPLH AA K L+
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 591 QHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638
GAD+N ++DG+T LDLA +H EE+++ GG L
Sbjct: 124 SKGADVNTSDSDGRTPLDLAR---------EHGNEEIVKLLEKQGGWL 162
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
+L +L+EA++ G+ V L+ + VN D DGR TPLH+AA +V+ L++
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGAD-VNASDSDGR--TPLHYAAKEGHKEIVKLLISK 59
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA++G + KG D
Sbjct: 60 GADV----NAKDSDGRTPLHYAAKEGHKEIVK----------------LLISKGAD---- 95
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
VNA+D+ GR TPLH+AA GH E+ ++L+ GA+VN +D
Sbjct: 96 --------VNAKDSDGR--TPLHYAA---------KEGHKEIVKLLISKGADVNTSDSDG 136
Query: 578 FTPL 581
TPL
Sbjct: 137 RTPL 140
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L+EA G+ RVK + + G TPLH A + K IV+ LI KGA
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH---KEIVKLLISKGA 61
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N K+ + P+H AA GH +++ L+ GA VN D G+T LH A++ + V++
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 793 LLSHNAD--TSIVSLLVIFSCSTNLGLKHLLELFERE 827
L+S AD TS + G + +++L E++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 31/126 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G K++V+ L++ GA ++A+D G PLH A GH ++V+LL+ A+ N +D+ TPL
Sbjct: 48 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA +G ++ ++ GAD + +G
Sbjct: 108 HYAAKEGHKEIV-------------------------------KLLISKGADVNTSDSDG 136
Query: 122 QTPLDL 127
+TPLDL
Sbjct: 137 RTPLDL 142
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ ++LI GA+VNA D TPLH AA + E+ LL+S+GAD
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 274 TLHNCHSKSAIDVA 287
+ ++ +D+A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 23/112 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+++GA+VN +D TPLH AA +G +IV+LL+ GAD + K+ DG TPL +EG +
Sbjct: 24 IENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHK 83
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGE 1174
++ LL A ++N +D+ GR TPLH AA E
Sbjct: 84 EIVKLLISKGA--------------------DVNAKDSDGR--TPLHYAAKE 113
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ ++LI GA+VNA D TPLH AA + E+ LL+S+GAD
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+ GA+VN D TPLH AA +G +IV+LL+ GAD + + DG TPLDL RE G++
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Query: 1123 DVSDLLRGNSALLD 1136
++ LL L+
Sbjct: 150 EIVKLLEKQGGWLE 163
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G K++V+ L++ GA ++A+D G PLH A GH ++V+LL+ A+ NT D+ TPL
Sbjct: 81 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Query: 62 HEAAAKGKTDVC 73
A G ++
Sbjct: 141 DLAREHGNEEIV 152
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G PLH A GH E+ ++LI GA+VN D TPL A E+ LL +G
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G+ + + LI+ GA+VNA D TPLH AA + E+ LL+S+GAD
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYF------AEH 81
L A G+ D V+ L+E A+ N D+ TPLH AA +G ++ + A+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 82 SSKSNQYVYGIGGGTGCPMHKD-RSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQ 138
S Y G HK+ ++ GAD K+ +G+TPL E + +++
Sbjct: 68 SDGRTPLHYAAKEG-----HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D AG TPLH AA GH E+ E
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAA---------KRGHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+KHGA+VN D+W TPLH AA + LL++GAD+N ++ GKTA D+++
Sbjct: 65 VLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A GH E+ E+L+K GA+VNA D+W TPLH AA+ LE+ +LL GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD G+ PLH A GH ++V +LL+ A+ N RD W TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G ++ L +GAD +++ G
Sbjct: 85 HLAATVGHLEIV-------------------------------EVLLEYGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N ++ P+HLAA +GHL++++ LL GA VN D G+TA
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D+W TPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL H
Sbjct: 13 DLGKKLLEATRAGQDDEV-RILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA D WG TPLH AA G +
Sbjct: 70 GADV----NARDIWGRTPLHLAATVGHLE 94
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N + + P+HLAA GHL++++ LL+ GA VN D+ G+T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL + AD + F S + G + L E+ ++
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+K G + +V LL VN RD+ GR TPLH AA + +VE LL +GADV
Sbjct: 54 AAKRGHLEIVEVLLKHGAD-VNARDIWGR--TPLHLAATVGHLEIVEVLLEYGADV---- 106
Query: 466 NATDKWGFTPLHEAAQKG 483
NA DK+G T + G
Sbjct: 107 NAQDKFGKTAFDISIDNG 124
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNAMD TPLH AA + LE+ +LL GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 278 CHSKSAIDVAPT 289
++ + +A T
Sbjct: 78 IWGRTPLHLAAT 89
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+GA+VN D TPLH AA +G +IV +LL+HGAD + ++ G TPL L
Sbjct: 36 NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHL 86
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 26/114 (22%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EA G+ D VR+L+ +GAD + + G TPL L
Sbjct: 12 SDLGK--KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
AAK+G+L V+ LL ++N RD GR TPLHLAA HL + V L
Sbjct: 54 ----AAKRGHLEIVEVLLKHGADVNARDIWGR--TPLHLAA-TVGHLEIVEVLL 100
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 752 GHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
G D + L+ GA VN +D G T LH A+ + V VLL H AD +
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 80/168 (47%), Gaps = 43/168 (25%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
+ L EA + G+ +VK L+ N VNA D+ GR TPLH AA
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGADV 63
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH+A GH EV ++L+ GA+VN D TPLH AA K L+
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 591 QHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638
GAD+N ++DG+T LDLA +H EE+++ GG L
Sbjct: 124 SKGADVNTSDSDGRTPLDLAR---------EHGNEEVVKLLEKQGGWL 162
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
+L +L+EA++ G+ V L+ + VN D DGR TPLH AA VV+ L++
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGAD-VNASDSDGR--TPLHHAAENGHKEVVKLLISK 59
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA+ G + KG D
Sbjct: 60 GADV----NAKDSDGRTPLHHAAENGHKEVVK----------------LLISKGAD---- 95
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
VNA+D+ GR PLH+A GH EV ++L+ GA+VN +D
Sbjct: 96 --------VNAKDSDGR-----------TPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 578 FTPL 581
TPL
Sbjct: 137 RTPL 140
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L+EA G+ RVK + + G TPLH A + + K +V+ LI KGA
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGH---KEVVKLLISKGA 61
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N K+ + P+H AA+ GH +V+ L+ GA VN D G+T LH A + + V++
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 793 LLSHNAD--TSIVSLLVIFSCSTNLGLKHLLELFERE 827
L+S AD TS + G + +++L E++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G K+VV+ L++ GA ++A+D G PLH+A GH +VV+LL+ A+ N +D+ TPL
Sbjct: 48 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G +V ++ GAD + +G
Sbjct: 108 HHAAENGHKEVV-------------------------------KLLISKGADVNTSDSDG 136
Query: 122 QTPLDLTVA---EDVRSLLQ 138
+TPLDL E+V LL+
Sbjct: 137 RTPLDLAREHGNEEVVKLLE 156
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH+A GH EV ++LI GA+VNA D TPLH AA EV LL+S+GAD
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 274 TLHNCHSKSAIDVA 287
+ ++ +D+A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 37/59 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH+A GH EV ++LI GA+VNA D TPLH AA EV LL+S+GAD
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+ GA+VN D TPLH AA G ++V+LL+ GAD + + DG TPLDL RE G++
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Query: 1123 DVSDLLRGNSALLD 1136
+V LL L+
Sbjct: 150 EVVKLLEKQGGWLE 163
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GA+VN +D TPLH AA G ++V+LL+ GAD + K+ DG TPL E G +
Sbjct: 24 IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLH 1169
+V LL G + L AA+ G+ V+ L++ ++N D+ GR TPL
Sbjct: 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR--TPLD 141
Query: 1170 LA 1171
LA
Sbjct: 142 LA 143
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G PLH+A GH EV ++LI GA+VN D TPL A EV LL +G
Sbjct: 103 GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
A G+ + + LI+ GA+VNA D TPLH AA EV LL+S+GAD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQDVSDLL----------- 1128
L EAA G D V+ L+++GAD + + DG TPL E G ++V LL
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 1129 -RGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTLG 1186
G + L AA+ G+ V+ L++ ++N +D+ GR TPLH AA E H + ++ +
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAA-ENGHKEVVKLLIS 124
Query: 1187 K 1187
K
Sbjct: 125 K 125
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G+ D V+ L+E A+ N D+ TPLH AA G +V + + ++ + + +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEV-VKLLISKGADVNAKDSD 69
Query: 91 GIGGGTGCPMHKDRS--------CYLAHGADPFLKNQEGQTPL 125
G P+H ++ GAD K+ +G+TPL
Sbjct: 70 GR-----TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G LLEA R G V+ + + VN K G TPLH A + + IVE L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLE---IVEVLLKAG 70
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A +N K+K+ P+HLAA GHL++++ LL+ GA VN D G T LH AR+ + V
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 792 VLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
VLL AD + F S + G + L E+ +
Sbjct: 131 VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 85/184 (46%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN +D DG TPLH AA + +VE LL
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKA 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA DK G+TPLH AA++G E+ E
Sbjct: 70 GADV----NAKDKDGYTPLHLAAREGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA+D G TPLH AA GH E+ E+L+K GA+VN D +
Sbjct: 100 --LKAGADVNAKDKDG--YTPLHLAA---------REGHLEIVEVLLKAGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA+D G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K GA+VN D +TPLH AA + LL
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
+ GAD+N ++ GKTA D+++
Sbjct: 134 KAGADVNAQDKFGKTAFDISI 154
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVAL----GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA +
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKAGAD 105
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 24/121 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
+GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L
Sbjct: 36 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL--------- 86
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
AA++G+L V+ LL A ++N +D G TPLHLAA E HL + V
Sbjct: 87 -----------AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREG-HLEIVEVL 132
Query: 1185 L 1185
L
Sbjct: 133 L 133
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A+D G PLH A GH ++V +LL+A A+ N +D +TPL
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G ++ E K+ V P+H + L GAD
Sbjct: 85 HLAAREGHLEIV------EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L REG
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKAGADVNAQDK--FGKTAFDISIDNGN 158
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N +D +TPLH AA +G ++ E K+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV------EVLLKAGA 71
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAE 131
V P+H + L GAD K+++G TPL L E
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN +D DG TPLH AA + +VE LL
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKA 57
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA DK G+TPLH AA++G E+ E
Sbjct: 58 GADV----NAKDKDGYTPLHLAAREGHL------------------EIVEVL-------- 87
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA+D G TPLH AA GH E+ E+L+K GA+VN D +
Sbjct: 88 --LKAGADVNAKDKDG--YTPLHLAA---------REGHLEIVEVLLKAGADVNAQDKFG 134
Query: 578 FTPL 581
TP
Sbjct: 135 KTPF 138
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G LLEA R G V+ + + VN K G TPLH A + + IVE L++ G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLE---IVEVLLKAG 58
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A +N K+K+ P+HLAA GHL++++ LL+ GA VN D G T LH AR+ + V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 792 VLLSHNADTS 801
VLL AD +
Sbjct: 119 VLLKAGADVN 128
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 70/141 (49%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA+D G TPLH AA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K GA+VN D +TPLH AA + LL
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 591 QHGADINLKNTDGKTALDLAV 611
+ GAD+N ++ GKT DLA+
Sbjct: 122 KAGADVNAQDKFGKTPFDLAI 142
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A+D G PLH A GH ++V +LL+A A+ N +D +TPL
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G ++ E K+ V P+H + L GAD
Sbjct: 73 HLAAREGHLEIV------EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQDA 140
+++ G+TP DL + ED+ +LQ A
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 274 TLHNCHSKSAIDVA 287
+ K+ D+A
Sbjct: 128 NAQDKFGKTPFDLA 141
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 24/121 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
+GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL--------- 74
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
AA++G+L V+ LL A ++N +D G TPLHLAA E HL + V
Sbjct: 75 -----------AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREG-HLEIVEVL 120
Query: 1185 L 1185
L
Sbjct: 121 L 121
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 679 ACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEK 737
A R+G V+ L + VN K G TPLH A + + IVE L++ GA +N K
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE---IVEVLLKAGADVNAK 97
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQT 776
+K+ P+HLAA GHL++++ LL+ GA VN D G+T
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 23/109 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+K GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL------- 107
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
AA++G+L V+ LL A ++N +D G+ TP LA
Sbjct: 108 -------------AAREGHLEIVEVLLKAGADVNAQDKFGK--TPFDLA 141
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
G PLH A GH E+ E+L+KAGA+VNA D + TP A ++ +L
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N +D +TPLH AA +G ++ E K+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV------EVLLKAGA 59
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAE 131
V P+H + L GAD K+++G TPL L E
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN +D DG TPLH AA + +VE LL
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKA 57
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA DK G+TPLH AA++G E+ E
Sbjct: 58 GADV----NAKDKDGYTPLHLAAREGHL------------------EIVEVL-------- 87
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA+D G TPLH AA GH E+ E+L+K GA+VN D +
Sbjct: 88 --LKAGADVNAKDKDG--YTPLHLAA---------REGHLEIVEVLLKAGADVNAQDKFG 134
Query: 578 FTPL 581
TP
Sbjct: 135 KTPF 138
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G LLEA R G V+ + + VN K G TPLH A + + IVE L++ G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLE---IVEVLLKAG 58
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A +N K+K+ P+HLAA GHL++++ LL+ GA VN D G T LH AR+ + V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 792 VLLSHNADTS 801
VLL AD +
Sbjct: 119 VLLKAGADVN 128
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 70/141 (49%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA+D G TPLH AA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K GA+VN D +TPLH AA + LL
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 591 QHGADINLKNTDGKTALDLAV 611
+ GAD+N ++ GKT DLA+
Sbjct: 122 KAGADVNAQDKFGKTPFDLAI 142
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A+D G PLH A GH ++V +LL+A A+ N +D +TPL
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G ++ E K+ V P+H + L GAD
Sbjct: 73 HLAAREGHLEIV------EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 114 PFLKNQEGQTPLDLTVA---EDVRSLLQDA 140
+++ G+TP DL + ED+ +LQ A
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 274 TLHNCHSKSAIDVA 287
+ K+ D+A
Sbjct: 128 NAQDKFGKTPFDLA 141
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ E+L+KAGA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 24/121 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
+GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL--------- 74
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
AA++G+L V+ LL A ++N +D G TPLHLAA E HL + V
Sbjct: 75 -----------AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREG-HLEIVEVL 120
Query: 1185 L 1185
L
Sbjct: 121 L 121
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 679 ACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEK 737
A R+G V+ L + VN K G TPLH A + + IVE L++ GA +N K
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE---IVEVLLKAGADVNAK 97
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+K+ P+HLAA GHL++++ LL+ GA VN D G+T R+ VL
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K GA+VN D +TPLH AA +G +IV +LL+ GAD + +++ G TP DL +REG +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 148 DIAEVLQ 154
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 23/112 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+K GA+VN D +TPLH AA +G +IV +LL+ GAD + K++DG TPL L
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL------- 107
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
AA++G+L V+ LL A ++N +D G+ TP LA E
Sbjct: 108 -------------AAREGHLEIVEVLLKAGADVNAQDKFGK--TPFDLAIRE 144
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
G PLH A GH E+ E+L+KAGA+VNA D + TP A + ++ +L
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D +TPLH AA + LE+ +LL GAD
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N +D +TPLH AA +G ++ E K+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV------EVLLKAGA 59
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAE 131
V P+H + L GAD K+++G TPL L E
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN RD G TPLH AA + + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA++G E+ E
Sbjct: 70 GADV----NAKDSLGVTPLHLAARRGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L N VNA D+ G PLH A GH E+ E+L+K+GA+VN D +
Sbjct: 100 --LKNGADVNASDS-----------HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNARD G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LL 590
G+ PLH A GH E+ E+L+K+GA+VN +D FTPLH AA + LL
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KNGADVNAQDKFGKTAFDISI 154
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + +TG TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLE---IVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N K+ + P+HLAA GHL++++ LL+ GA VN D G T LH A+ + V V
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S + G + L E+ ++
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 198 LALETVIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253
L + V++ +G V +LG+ PLH A GH E+ E+L+K GA+VNA D FTPLH
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Query: 254 AASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
AA + LE+ +LL GAD + K+A D++
Sbjct: 120 AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 203 VIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A +GH E+ E+L+K GA+VNA D TPLH AA +
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVAPTR 290
LE+ +LL GAD + H + + +A R
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAAKR 123
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++ARD G PLH A FGH ++V +LL+ A+ N +D+ TPL
Sbjct: 25 GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G ++ + + + + +G P+H + L +GAD
Sbjct: 85 HLAARRGHLEI-VEVLLKNGADVNASDSHGF-----TPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 24/121 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
+GA+VN D +TPLH AA G +IV +LL++GAD + K+ G TPL L
Sbjct: 36 NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHL--------- 86
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
AA++G+L V+ LL ++N D+ G TPLHLAA ++ HL + V
Sbjct: 87 -----------AARRGHLEIVEVLLKNGADVNASDSHG--FTPLHLAA-KRGHLEIVEVL 132
Query: 1185 L 1185
L
Sbjct: 133 L 133
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN +D FTPLH AA +G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D TPLH AA +G +IV +LL++GAD + + G TPL L + G
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L N A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKNGADVNAQDK--FGKTAFDISIDNGN 158
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A G + +L+ GA+VNA D +TPLH AA LE+ +LL GAD ++
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-----VNA 75
Query: 281 KSAIDVAP 288
K ++ V P
Sbjct: 76 KDSLGVTP 83
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G D VR+L+ A+ N RD +TPLH AA G ++ + + + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEI-VEVLLKNGADVNAKDSL 79
Query: 91 GIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLT 128
G+ P+H + L +GAD + G TPL L
Sbjct: 80 GV-----TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D AG + PLH A GH E+ E
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAG-----------VTPLHLAAKRGHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+KHGA+VN +D W TPLH AA + LL++GAD+N ++ GKTA D+++
Sbjct: 65 VLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A GH E+ E+L+K GA+VNA D W TPLH AA+ LE+ +LL GAD
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A DD G+ PLH A GH ++V +LL+ A+ N D+W TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G ++ L +GAD +++ G
Sbjct: 85 HLAATVGHLEIV-------------------------------EVLLEYGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N + P+HLAA +GHL++++ LL GA VN D G+TA
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL H
Sbjct: 13 DLGKKLLEATRAGQDDEV-RILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA+D WG TPLH AA G +
Sbjct: 70 GADV----NASDSWGRTPLHLAATVGHLE 94
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN +D W TPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N + + P+HLAA GHL++++ LL+ GA VN D G+T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL + AD + F S + G + L E+ ++
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ +GA+VN D TPLH AA +G +IV +LL+HGAD + + G TPL L
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHL 86
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNAMD TPLH AA + LE+ +LL GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 278 CHSKSAIDVAPT 289
++ + +A T
Sbjct: 78 SWGRTPLHLAAT 89
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 26/114 (22%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EA G+ D VR+L+ +GAD + + G TPL L
Sbjct: 12 SDLGK--KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
AAK+G+L V+ LL ++N D+ GR TPLHLAA HL + V L
Sbjct: 54 ----AAKRGHLEIVEVLLKHGADVNASDSWGR--TPLHLAA-TVGHLEIVEVLL 100
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+K G + +V LL VN D GR TPLH AA + +VE LL +GADV
Sbjct: 54 AAKRGHLEIVEVLLKHGAD-VNASDSWGR--TPLHLAATVGHLEIVEVLLEYGADV---- 106
Query: 466 NATDKWGFTPLHEAAQKG 483
NA DK+G T + G
Sbjct: 107 NAQDKFGKTAFDISIDNG 124
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 752 GHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
G D + L+ GA VN +D G T LH A+ + V VLL H AD +
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + + G TPLH A + + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLE---IVEVLLKYGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + P+HLAAD GHL++++ LL+ GA VN D G T LH A D + V V
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S + G + L E+ ++
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDWLGH--TPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+KHGA+VN D FTPLH AA + LL
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KYGADVNAQDKFGKTAFDISI 154
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNATDWLGH--TPLHLAAKTGHLEIVEVLLKY 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D +G TPLH AA G E+ E
Sbjct: 70 GADV----NAWDNYGATPLHLAADNGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L + VNA+D G PLH A GH E+ E+L+K+GA+VN D
Sbjct: 100 --LKHGADVNAKDY-----------EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA D FTPLH AA LE+ +LL GAD
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V LG PLH A GH E+ E+L+K GA+VNA D + TPLH AA
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKHGAD 105
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 19/149 (12%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D G PLH A GH ++V +LL+ A+ N DN+ TPL
Sbjct: 25 GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVY-GIGGGTGCPMH--------KDRSCYLAHGA 112
H AA G ++ +H + N Y G P+H + L +GA
Sbjct: 85 HLAADNGHLEIV--EVLLKHGADVNAKDYEGF-----TPLHLAAYDGHLEIVEVLLKYGA 137
Query: 113 DPFLKNQEGQTPLDLTV---AEDVRSLLQ 138
D +++ G+T D+++ ED+ +LQ
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL++GAD + + GATPL L
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N +D +G TPLHLAA + HL +
Sbjct: 87 -------------AADNGHLEIVEVLLKHGADVNAKDYEG--FTPLHLAAYDG-HLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D + TPLH AA G +IV +LL+HGAD + K+ +G TPL L +G
Sbjct: 67 LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKYGADVNAQDK--FGKTAFDISIDNGN 158
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + +V LL VN +D +G TPLH AA + +VE LL +GADV
Sbjct: 87 AADNGHLEIVEVLLKHGAD-VNAKDYEG--FTPLHLAAYDGHLEIVEVLLKYGADV---- 139
Query: 466 NATDKWGFTPLHEAAQKGR 484
NA DK+G T + G
Sbjct: 140 NAQDKFGKTAFDISIDNGN 158
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI--YFAEHSSKS 85
L A G D VR+L+ A+ N D TPLH AA G ++ + Y A+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 86 NQYVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLT 128
N YG P+H + L HGAD K+ EG TPL L
Sbjct: 78 N---YG-----ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 82/168 (48%), Gaps = 50/168 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GADV NA+D G+TPLH AA G E+ E
Sbjct: 30 VRILMANGADV----NASDHVGWTPLHLAAYFGHL------------------EIVEVL- 66
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA D+ G TPLH AA GH EV E+L+K+GA+V
Sbjct: 67 ---------LKNGADVNADDSLG--VTPLHLAA---------DRGHLEVVEVLLKNGADV 106
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N D FTPLH AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + + G TPLH A Y IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLA---AYFGHLEIVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + + P+HLAAD GHL+V++ LL+ GA VN D G T LH A + V V
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL H AD + F S + G + L E+ ++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNASDHVGW--TPLHLAAYFGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA +G E+ E
Sbjct: 70 GADV----NADDSLGVTPLHLAADRGHL------------------EVVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L N VNA D G TPLH AA + GH E+ E+L+KHGA+VN D +
Sbjct: 100 --LKNGADVNANDHNG--FTPLHLAANI---------GHLEIVEVLLKHGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 198 LALETVIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253
L + V++ +G V +LG+ PLH A GH EV E+L+K GA+VNA D FTPLH
Sbjct: 60 LEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
Query: 254 AASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
AA+ LE+ +LL GAD + K+A D++
Sbjct: 120 AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D G PLH A FGH ++V +LL+ A+ N D+ TPL
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA +G +V + +N + G T P+H + L HGAD
Sbjct: 85 HLAADRGHLEVVEVLLKNGADVNANDH----NGFT--PLHLAANIGHLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V +G PLH A +GH E+ E+L+K GA+VNA D TPLH AA +
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 259 RLEVCSLLLSEGAD 272
LEV +LL GAD
Sbjct: 92 HLEVVEVLLKNGAD 105
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN +D +TPLH AA G +IV +LL++GAD + + G TPL L
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA +G+L V+ LL ++N D G TPLHLAA HL +
Sbjct: 87 -------------AADRGHLEVVEVLLKNGADVNANDHNG--FTPLHLAA-NIGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 1055 YYGTLTPHNV--KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGAT 1112
Y+G L V K+GA+VN D TPLH AA +G ++V +LL++GAD + + +G T
Sbjct: 56 YFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Query: 1113 PLDLVRE-GDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
PL L G ++ ++L + A ++A K G+ ++ DN N
Sbjct: 116 PLHLAANIGHLEIVEVLLKHGADVNAQDK--FGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + VV LL + VN D +G TPLH AA + +VE LL HGADV
Sbjct: 87 AADRGHLEVVEVLLKNGAD-VNANDHNG--FTPLHLAANIGHLEIVEVLLKHGADV---- 139
Query: 466 NATDKWGFTPLHEAAQKGR 484
NA DK+G T + G
Sbjct: 140 NAQDKFGKTAFDISIDNGN 158
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A G + +L+ GA+VNA D +TPLH AA LE+ +LL GAD +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 281 KSAIDVAPTR 290
+ + +A R
Sbjct: 81 VTPLHLAADR 90
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G D VR+L+ A+ N D+ +TPLH AA G ++ + + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI-VEVLLKNGADVNADDSL 79
Query: 91 GIGGGTGCPMH--KDR------SCYLAHGADPFLKNQEGQTPLDLT 128
G+ P+H DR L +GAD + G TPL L
Sbjct: 80 GV-----TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
R+L EA + G +V+ L+ N VNA D G +TPLH AA
Sbjct: 16 RKLLEAARAGQDDEVRILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A +GH E+ E+L+K+GA+VN D TPLH AA + LL
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
+HGAD+N ++ GKTA D+++
Sbjct: 134 KHGADVNAQDKFGKTAFDISI 154
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + TG TPLH A Y IVE L++ GA
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLA---AYSGHLEIVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
++ + P+HLAA GHL++++ LL+ GA VN +D G T LH A+ + V V
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL H AD + F S + G + L E+ ++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 84/177 (47%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G +TPLH AA + +VE LL H
Sbjct: 13 DLGRKLLEAARAGQDDEV-RILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV +A+D +G+TPLH AA G E+ E
Sbjct: 70 GADV----DASDVFGYTPLHLAAYWGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L N VNA D+ G+ PLH A +G+ E+ E+L+KHGA+VN D
Sbjct: 100 --LKNGADVNAMDS-----------DGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A +GH E+ E+L+K GA+VNAMD TPLH AA LE+ +LL GAD
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 273 PTLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 139 VNAQDKFGKTAFDIS 153
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D+ G PLH A GH ++V +LL+ A+ + D + +TPL
Sbjct: 25 GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G ++ E K+ V + P+H + L HGAD
Sbjct: 85 HLAAYWGHLEIV------EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A GH E+ E+L+K GA+V+A D++ +TPLH AA
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKNGAD 105
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 1045 TGTXXXXXNMYYGTLTPHNV--KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD 1102
TGT Y G L V KHGA+V+ +D++ +TPLH AA G +IV +LL++GAD
Sbjct: 46 TGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 1103 PSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQ 1161
+ + DG TPL L AAK G L V+ LL ++N +D
Sbjct: 106 VNAMDSDGMTPLHL--------------------AAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 1162 GRNSTPLHLAAGEK 1175
G+ + + + G +
Sbjct: 146 GKTAFDISIDNGNE 159
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN AD TPLH AA G +IV +LL+HGAD + G TPL L
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAA 1172
AA G+L V+ LL ++N D+ G TPLHLAA
Sbjct: 87 -------------AAYWGHLEIVEVLLKNGADVNAMDSDGM--TPLHLAA 121
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G+ PLH A +G+ ++V +LL+ A+ N +D + T
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 61 LHEAAAKGKTDVC 73
+ G D+
Sbjct: 150 FDISIDNGNEDLA 162
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 71/183 (38%), Gaps = 39/183 (21%)
Query: 302 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQ 361
G LLEA R G V+ + + TG TPL + S E + V +
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLH----LAAYSGHLEIVEVLLKHG 70
Query: 362 ATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSS 421
A V D GYT L +A + G + +V LL +
Sbjct: 71 ADV----DASDVFGYTPLHLA------------------------AYWGHLEIVEVLLKN 102
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
VN D DG TPLH AA + + +VE LL HGADV NA DK+G T +
Sbjct: 103 GAD-VNAMDSDGM--TPLHLAAKWGYLEIVEVLLKHGADV----NAQDKFGKTAFDISID 155
Query: 482 KGR 484
G
Sbjct: 156 NGN 158
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N DN TPLH AA G ++ + + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI-VEVLLKHGADVDAS 76
Query: 88 YVYGIGGGTGCPMHKDRSCYLAH----------GADPFLKNQEGQTPLDLT 128
V+G P+H + Y H GAD + +G TPL L
Sbjct: 77 DVFGY-----TPLH--LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA+D G L PL+ A ++GH E+ E
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYG-----------LTPLYLATAHGHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+K+GA+VN D FTPLH AA A+ LL+HGAD+N ++ GKTA D+++
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V GL PL+ A ++GH E+ E+L+K GA+VNA+D FTPLH AA
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
LE+ +LL GAD + K+A D++
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A+D+ GL PL+ A + GH ++V +LL+ A+ N D FTPL
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G ++ L HGAD +++ G
Sbjct: 85 HLAAFIGHLEIA-------------------------------EVLLKHGADVNAQDKFG 113
Query: 122 QTPLDLTVA---EDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIGNGNEDLAEILQ 133
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G LLEA R G V+ + + VN K Y G TPL+ A + + IVE L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHLE---IVEVLLKNG 70
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
A +N + P+HLAA +GHL++ + LL+ GA VN D G+TA
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N K++ L P++LA GHL++++ LL+ GA VN VD +G T LH A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ VLL H AD + F S G + L E+ ++
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D FTPLH AA G +I +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN +D G TPL+ A + + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA D GFTPLH AA G +
Sbjct: 70 GADV----NAVDAIGFTPLHLAAFIGHLE 94
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G PLH A GH ++ +LL+ A+ N +D + T
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 61 LHEAAAKGKTDVC 73
+ G D+
Sbjct: 117 FDISIGNGNEDLA 129
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ +GA+VN D + TPL+ A A G +IV +LL++GAD + + G TPL L
Sbjct: 34 MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL 86
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 198 LALETVIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253
L + V++ +G V A+G PLH A GH E+ E+L+K GA+VNA D + T
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 254 AASKSRLEVCSLL 266
+ ++ +L
Sbjct: 120 SIGNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D + TPL+ A + LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + +V LL + VN D G TPLH AA + + E LL HGADV
Sbjct: 54 ATAHGHLEIVEVLLKNGAD-VNAVDAIG--FTPLHLAAFIGHLEIAEVLLKHGADV---- 106
Query: 466 NATDKWGFTPL 476
NA DK+G T
Sbjct: 107 NAQDKFGKTAF 117
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EAA G+ D VR+L+ +GAD + K+ G TPL L
Sbjct: 12 SDLGK--KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAA 1172
A G+L V+ LL ++N DA G TPLHLAA
Sbjct: 54 ----ATAHGHLEIVEVLLKNGADVNAVDAIG--FTPLHLAA 88
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G LLEA R G V+ + + VN + Y GDTPLH A + + IVE L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLE---IVEVLLKNG 70
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A +N + P+HLAA GHL++++ LL+ GA VN D +G T LH A + V
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVE 130
Query: 792 VLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
VLL + AD + F S + G + L E+ +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA DT G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K+GA+VN D TPLH AA + LL
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KYGADVNAQDKFGKTAFDISI 154
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA++G E+ E
Sbjct: 70 GADV----NALDFSGSTPLHLAAKRGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA DT G STPLH AA GH E+ E+L+K+GA+VN D +
Sbjct: 100 --LKYGADVNADDTIG--STPLHLAA---------DTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A GH E+ E+L+K GA+VNA+D TPLH AA +
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 259 RLEVCSLLLSEGAD 272
LE+ +LL GAD
Sbjct: 92 HLEIVEVLLKYGAD 105
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D + TPLH AA G +IV +LL++GAD + + G+TPL L
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AAK+G+L V+ LL ++N D G STPLHLAA + HL +
Sbjct: 87 -------------AAKRGHLEIVEVLLKYGADVNADDTIG--STPLHLAA-DTGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 21/150 (14%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D G PLH A GH ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPL 84
Query: 62 HEAAAKGKTDVCIGI--YFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHG 111
H AA +G ++ + Y A+ ++ IG P+H + L +G
Sbjct: 85 HLAAKRGHLEIVEVLLKYGADVNADDT-----IG---STPLHLAADTGHLEIVEVLLKYG 136
Query: 112 ADPFLKNQEGQTPLDLTV---AEDVRSLLQ 138
AD +++ G+T D+++ ED+ +LQ
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+K+GA+VN D TPLH AA +G +IV +LL++GAD + + G+TPL L
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL------- 119
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA G+L V+ LL ++N +D G+ + + + G +
Sbjct: 120 -------------AADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 302 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEM 360
G LLEA R G V+ + + VN + Y GDTPL + L E + V +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHL----EIVEVLLKN 69
Query: 361 QATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLS 420
A V AL +G L A+K G + +V LL
Sbjct: 70 GADV------------NALDFSGSTPLHL----------------AAKRGHLEIVEVLLK 101
Query: 421 SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAA 480
VN D G STPLH AA + +VE LL +GADV NA DK+G T +
Sbjct: 102 YGAD-VNADDTIG--STPLHLAADTGHLEIVEVLLKYGADV----NAQDKFGKTAFDISI 154
Query: 481 QKG 483
G
Sbjct: 155 DNG 157
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNA D + TPLH AA LE+ +LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 278 CHSKSAIDVAPTR 290
+ + +A R
Sbjct: 78 FSGSTPLHLAAKR 90
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
+G PLH A GH E+ E+L+K GA+VNA D + T + ++ +L
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLV 807
AA G D + L+ GA VN D G T LH AR + V VLL + AD + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD--- 77
Query: 808 IFSCSTNLGLKHLLELFEREQITLDILAEMNHED 841
FS ST L L E ++ L A++N +D
Sbjct: 78 -FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N D + TPLH AA G ++ E K+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIV------EVLLKNGA 71
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDL 127
V + P+H + L +GAD + G TPL L
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 82/168 (48%), Gaps = 50/168 (29%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L+A+GADV NA D G+TPLH AA G E+ E
Sbjct: 30 VRILMANGADV----NAADVVGWTPLHLAAYWGHL------------------EIVEVL- 66
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA DT G STPLH AA +GH E+ E+L+K+GA+V
Sbjct: 67 ---------LKNGADVNAYDTLG--STPLHLAA---------HFGHLEIVEVLLKNGADV 106
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N D TPLH AA + LL++GAD+N ++ GKTA D+++
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A Y IVE L++ GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLA---AYWGHLEIVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + P+HLAA GHL++++ LL+ GA VN D G T LH A + V V
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S N G + L E+ ++
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 82/177 (46%), Gaps = 46/177 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D+ G TPLH AA + + +VE LL +
Sbjct: 13 DLGKKLLEAARAGRDDEV-RILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPLH AA G E+ E
Sbjct: 70 GADV----NAYDTLGSTPLHLAAHFGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
L N VNA+D G+ PLH A + GH E+ E+L+K+GA+VN D
Sbjct: 100 --LKNGADVNAKDD-----------NGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 198 LALETVIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253
L + V++ +G V LG PLH A +GH E+ E+L+K GA+VNA D TPLH
Sbjct: 60 LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL 119
Query: 254 AASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTR------ELQQRLS 297
AA++ LE+ +LL GAD + K+A D++ E+ Q+L+
Sbjct: 120 AANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V +G PLH A +GH E+ E+L+K GA+VNA D TPLH AA
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVAPTR 290
LE+ +LL GAD + + + + +A R
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANR 123
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 34/141 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G PLH A FGH ++V +LL+ A+ N +D+ TP
Sbjct: 57 WGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITP 116
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA +G ++ L +GAD +++
Sbjct: 117 LHLAANRGHLEIV-------------------------------EVLLKYGADVNAQDKF 145
Query: 121 GQTPLDLTV---AEDVRSLLQ 138
G+T D+++ ED+ +LQ
Sbjct: 146 GKTAFDISINNGNEDLAEILQ 166
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN AD+ +TPLH AA G +IV +LL++GAD + + G+TPL L
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N +D G TPLHLAA + HL +
Sbjct: 87 -------------AAHFGHLEIVEVLLKNGADVNAKDDNG--ITPLHLAA-NRGHLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 23/124 (18%)
Query: 1055 YYGTLTPHNV--KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGAT 1112
Y+G L V K+GA+VN D TPLH AA G +IV +LL++GAD + K+ +G T
Sbjct: 56 YWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Query: 1113 PLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLA 1171
PL L AA +G+L V+ LL ++N +D G+ + + +
Sbjct: 116 PLHL--------------------AANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISIN 155
Query: 1172 AGEK 1175
G +
Sbjct: 156 NGNE 159
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNC 278
A G + +L+ GA+VNA D+ +TPLH AA LE+ +LL GAD ++
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + +V LL + VN +D +G TPLH AA + +VE LL +GADV
Sbjct: 87 AAHFGHLEIVEVLLKNGAD-VNAKDDNG--ITPLHLAANRGHLEIVEVLLKYGADV---- 139
Query: 466 NATDKWGFTPLHEAAQKGR 484
NA DK+G T + G
Sbjct: 140 NAQDKFGKTAFDISINNGN 158
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G D VR+L+ A+ N D +TPLH AA G ++ + + ++ Y
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL----KNGADVNAY 76
Query: 91 GIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLT 128
G T P+H + L +GAD K+ G TPL L
Sbjct: 77 DTLGST--PLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + TG TPLH A S + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
++ + P+HLAA GHL++++ LL+ GA VN D+ G T LH A + + V V
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 793 LLSHNADTS 801
LL + AD +
Sbjct: 132 LLKYGADVN 140
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D G TPLH AA
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGL--TPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ E+L+K+GA+VN D+ TPLH AA + LL
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KYGADVNAQDKFGKTAFDISI 154
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 83/184 (45%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILIANGADVNAVDNTGL--TPLHLAAVSGHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV +A D +GFTPLH AA G E+ E
Sbjct: 70 GADV----DAADVYGFTPLHLAAMTGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L VNA D G STPLH AA GH E+ E+L+K+GA+VN D +
Sbjct: 100 --LKYGADVNAFDMTG--STPLHLAA---------DEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA D+ TPLH AA + LE+ +LL GAD
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
GL PLH A GH E+ E+L+K GA+V+A D++ FTPLH AA LE+ +LL GAD
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D+ GL PLH A GH ++V +LL+ A+ + D + FTPL
Sbjct: 25 GQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR------SCYLAHGADPF 115
H AA G ++ ++ + N + + G T + D L +GAD
Sbjct: 85 HLAAMTGHLEIV--EVLLKYGADVN--AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 116 LKNQEGQTPLDLTV 129
+++ G+T D+++
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 21/120 (17%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+KHGA+V+ AD++ FTPLH AA G +IV +LL++GAD + + G+TPL L
Sbjct: 67 LKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHL------- 119
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA +G+L V+ LL ++N +D G+ + + + G + CR
Sbjct: 120 -------------AADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKSCR 166
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 60/123 (48%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL+HGAD + G TPL L
Sbjct: 34 IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
AA G+L V+ LL ++N D G STPLHLAA E HL +
Sbjct: 87 -------------AAMTGHLEIVEVLLKYGADVNAFDMTG--STPLHLAADEG-HLEIVE 130
Query: 1183 VTL 1185
V L
Sbjct: 131 VLL 133
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + + + IVE L++ GA +N + P+HLAAD GHL++++ LL+ G
Sbjct: 80 GFTPLHLAAMTGHLE---IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 765 AKVNLVDVLGQTAL 778
A VN D G+TA
Sbjct: 137 ADVNAQDKFGKTAF 150
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE LL GA ++A D G PLH A GH ++V +LL+ A+ N +D + T
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 62 HEAAAKGKTDVC 73
+ G D+
Sbjct: 151 DISIDNGNEDLA 162
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +LI GA+VNA+D TPLH AA LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G + +V LL VN D+ G STPLH AA + +VE LL +GADV
Sbjct: 87 AAMTGHLEIVEVLLKYGAD-VNAFDMTG--STPLHLAADEGHLEIVEVLLKYGADV---- 139
Query: 466 NATDKWGFTPLHEAAQKGR 484
NA DK+G T + G
Sbjct: 140 NAQDKFGKTAFDISIDNGN 158
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
L A G D VR+L+ A+ N DN TPLH AA G ++ + + +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEI-VEVLLKHGADVDAA 76
Query: 88 YVYGIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTVAE 131
VYG P+H + L +GAD + G TPL L E
Sbjct: 77 DVYGF-----TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D G L PLH A GH E+ E
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNALDEDG-----------LTPLHLAAQLGHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDGKTALDLAV 611
+L+K+GA+VN D + TPLH AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 65 VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 203 VIMPSGQAV-AL---GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V AL GL PLH A GH E+ E+L+K GA+VNA D + TPLH AA +
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
LE+ +LL GAD + K+A D++
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D+ GL PLH A GH ++V +LL+ A+ N DN+ TPL
Sbjct: 25 GQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA +G ++ L HGAD +++ G
Sbjct: 85 HLAAIRGHLEIV-------------------------------EVLLKHGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N +++ L P+HLAA LGHL++++ LL+ GA VN D G T LH A
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL H AD + F S + G + L E+ ++
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLE---IVEVLLKYGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N ++ + P+HLAA GHL++++ LL+ GA VN D G+TA
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D DG TPLH AA + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNALDEDGL--TPLHLAAQLGHLEIVEVLLKY 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA D +G TPLH AA +G +
Sbjct: 70 GADV----NAEDNFGITPLHLAAIRGHLE 94
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D + TPLH AA +G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D TPLH AA G +IV +LL++GAD + ++ G TPL L
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEK 1175
AA +G+L V+ LL ++N +D G+ + + + G +
Sbjct: 87 -------------AAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNA+D TPLH AA LE+ +LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 278 CHSKSAIDVAPTR 290
+ + +A R
Sbjct: 78 NFGITPLHLAAIR 90
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 26/114 (22%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EAA G+ D VR+L+ +GAD + + DG TPL L
Sbjct: 12 SDLGK--KLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
AA+ G+L V+ LL ++N D G TPLHLAA + HL + V L
Sbjct: 54 ----AAQLGHLEIVEVLLKYGADVNAEDNFG--ITPLHLAA-IRGHLEIVEVLL 100
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A++ G + +V LL VN D G TPLH AA + +VE LL HGADV
Sbjct: 54 AAQLGHLEIVEVLLKYGAD-VNAEDNFG--ITPLHLAAIRGHLEIVEVLLKHGADV---- 106
Query: 466 NATDKWGFTPLHEAAQKG 483
NA DK+G T + G
Sbjct: 107 NAQDKFGKTAFDISIDNG 124
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D G +TPLH AA Y H E+ E
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAA---------DYDHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+KHGA+VN D TPLH AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 65 VLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + + G+TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLE---IVEVLLKHGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N + + P+HLAA GHL++++ LL+ GA VN D G+TA
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 203 VIMPSGQAVAL----GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V G PLH A Y H E+ E+L+K GA+VNA D TPLH AA
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
LE+ +LL GAD + K+A D++
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G +TPLH AA Y+ + +VE LL H
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKH 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
GADV NA D G TPLH AA G +
Sbjct: 70 GADV----NAHDNDGSTPLHLAALFGHLE 94
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D G PLH A + H ++V +LL+ A+ N DN TPL
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G ++ L HGAD +++ G
Sbjct: 85 HLAALFGHLEIV-------------------------------EVLLKHGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N +++ P+HLAAD HL++++ LL+ GA VN D G T LH A
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL H AD + F S + G + L E+ ++
Sbjct: 90 FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D TPLH AA G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y ++VE LL GA ++A D+ G PLH A FGH ++V +LL+ A+ N +D + T
Sbjct: 57 YDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 61 LHEAAAKGKTDVC 73
+ G D+
Sbjct: 117 FDISIDNGNEDLA 129
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 26/117 (22%)
Query: 387 KKLLQEPPSVVDLESQLLEASKGGDMTVVTR-------LLSSCPHI------------VN 427
KKLL+ + D E ++L A+ G D+ R L + H+ VN
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 428 CRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
D DG STPLH AA + + +VE LL HGADV NA DK+G T + G
Sbjct: 75 AHDNDG--STPLHLAALFGHLEIVEVLLKHGADV----NAQDKFGKTAFDISIDNGN 125
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ +GA+VN D TPLH AA +IV +LL+HGAD + + DG+TPL L
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHL 86
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
A G + +L+ GA+VNA D TPLH AA LE+ +LL GAD H+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNS 1132
+DL K L EAA G+ D VR+L+ +GAD + +R G TPL L
Sbjct: 12 SDLGK--KLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL---------------- 53
Query: 1133 ALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAA 1172
AA +L V+ LL ++N D G STPLHLAA
Sbjct: 54 ----AADYDHLEIVEVLLKHGADVNAHDNDG--STPLHLAA 88
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
AA G D + L+ GA VN D G T LH A D + V VLL H AD +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 34/141 (24%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
++L EA + G +V+ L+ N VNA D +G TPLH AA
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G+ PL A +GH E+ E+L+K+GA+VN D+ TPLH AA + LL
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 591 QHGADINLKNTDGKTALDLAV 611
++GAD+N ++ GKTA D+++
Sbjct: 134 KNGADVNAQDKFGKTAFDISI 154
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + +G TPLH A + + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE---IVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+N + + P+ LAA GHL++++ LL+ GA VN D+ G T LH A + V V
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
LL + AD + F S + G + L E+ ++
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 81/184 (44%), Gaps = 46/184 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN D G TPLH AA + +VE LL +
Sbjct: 13 DLGKKLLEAARAGRDDEV-RILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GADV NA D G TPL AA G E+ E
Sbjct: 70 GADV----NAVDHAGMTPLRLAALFGHL------------------EIVEVL-------- 99
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L N VNA D G TPLH AA +GH E+ E+L+K+GA+VN D +
Sbjct: 100 --LKNGADVNANDMEGH--TPLHLAA---------MFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 578 FTPL 581
T
Sbjct: 147 KTAF 150
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PL A +GH E+ E+L+K GA+VNA D+ TPLH AA LE+ +LL GAD
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V A G PLH A GH E+ E+L+K GA+VNA+D TPL AA
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVAP 288
LE+ +LL GAD ++ + + +A
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR D V L+A+GA ++A D G PLH A GH ++V +LL+ A+ N D+ TPL
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
AA G ++ + + + + + G P+H + L +GAD
Sbjct: 85 RLAALFGHLEI-VEVLLKNGADVNANDMEG-----HTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 114 PFLKNQEGQTPLDLTV---AEDVRSLLQ 138
+++ G+T D+++ ED+ +LQ
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +GA+VN D +TPLH AA G +IV +LL++GAD + + G TPL L
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL------- 86
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAA 1172
AA G+L V+ LL ++N D +G TPLHLAA
Sbjct: 87 -------------AALFGHLEIVEVLLKNGADVNANDMEGH--TPLHLAA 121
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D+ TPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 160 DLAEILQ 166
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G PLH A FGH ++V +LL+ A+ N +D + T
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 61 LHEAAAKGKTDVC 73
+ G D+
Sbjct: 150 FDISIDNGNEDLA 162
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+K+GA+VN D TPL AA G +IV +LL++GAD + + +G TPL L G
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++ ++L N A ++A K G+ ++ DN N
Sbjct: 127 EIVEVLLKNGADVNAQDK--FGKTAFDISIDNGN 158
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G + +V LL + VN D++G TPLH AA + + +VE LL +GADV NA D
Sbjct: 91 GHLEIVEVLLKNGAD-VNANDMEGH--TPLHLAAMFGHLEIVEVLLKNGADV----NAQD 143
Query: 470 KWGFTPLHEAAQKGR 484
K+G T + G
Sbjct: 144 KFGKTAFDISIDNGN 158
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
A G + +L+ GA+VNA D +TPLH AA LE+ +LL GAD
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G D VR+L+ A+ N D +TPLH AA G ++ E K+ V
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV------EVLLKNGADVN 74
Query: 91 GIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLT 128
+ P+ + L +GAD + EG TPL L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLV 807
AA G D + L+ GA VN D G T LH A + + V VLL + AD + V
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD--- 77
Query: 808 IFSCSTNLGLKHLLELFEREQITLDILAEMNHEDLK 843
+ T L L L E ++ L A++N D++
Sbjct: 78 -HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G KD V+ LL +GA ++A D G PLH A GH +VV+LLL A+PN +D+ TPL
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AA G +V + + ++ + + + G P+H + L+ GAD
Sbjct: 75 HLAAENGHKEV-VKLLLSQGADPNAKDSDGK-----TPLHLAAENGHKEVVKLLLSQGAD 128
Query: 114 PFLKNQEGQTPLDLTVA---EDVRSLLQ 138
P + +G+TPLDL E+V LL+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L+EA G+ RVK L + G TPLH A + + K +V+ L+ +GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH---KEVVKLLLSQGA 61
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
N K+ + P+HLAA+ GH +V+ LL GA N D G+T LH A + + V++
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 793 LLSHNAD--TSIVSLLVIFSCSTNLGLKHLLELFERE 827
LLS AD TS + G + +++L E++
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 43/168 (25%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
+ L EA + G+ +VK L+ N VNA D+ G+ TPLH AA
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADVNASDSDGK--TPLHLAAENGHKEVVKLLLSQGADP 63
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH EV ++L+ GA+ N D TPLH AA K LL
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 591 QHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638
GAD N ++DG+T LDLA +H EE+++ GG L
Sbjct: 124 SQGADPNTSDSDGRTPLDLAR---------EHGNEEVVKLLEKQGGWL 162
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 84/186 (45%), Gaps = 50/186 (26%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
+L +L+EA++ G+ V LL + VN D DG+ TPLH AA VV+ LL+
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGAD-VNASDSDGK--TPLHLAAENGHKEVVKLLLSQ 59
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
GAD NA D G TPLH AA+ G + V
Sbjct: 60 GADP----NAKDSDGKTPLHLAAENGHKE------------------------------V 85
Query: 518 KKLVNPQTV--NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADL 575
KL+ Q NA+D+ G+ TPLH AA GH EV ++L+ GA+ N +D
Sbjct: 86 VKLLLSQGADPNAKDSDGK--TPLHLAA---------ENGHKEVVKLLLSQGADPNTSDS 134
Query: 576 WKFTPL 581
TPL
Sbjct: 135 DGRTPL 140
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH EV ++L+ GA+ NA D TPLH AA EV LLLS+GADP
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 274 TLHNCHSKSAIDVA 287
+ ++ +D+A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 24/123 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GA+VN +D TPLH AA G ++V+LLL GADP+ K+ DG TPL L E G +
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK 83
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
+V LL A + N +D+ G+ TPLHLAA E H + +
Sbjct: 84 EVVKLLLSQGA--------------------DPNAKDSDGK--TPLHLAA-ENGHKEVVK 120
Query: 1183 VTL 1185
+ L
Sbjct: 121 LLL 123
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH EV ++L+ GA+ NA D TPLH AA EV LLLS+GADP
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 274 TLHNCHSKSAIDVA 287
+ K+ + +A
Sbjct: 97 NAKDSDGKTPLHLA 110
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+ GA+ N D TPLH AA G ++V+LLL GADP+ + DG TPLDL RE G++
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149
Query: 1123 DVSDLLRGNSALLD 1136
+V LL L+
Sbjct: 150 EVVKLLEKQGGWLE 163
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A G+ + + L++ GA+VNA D TPLH AA EV LLLS+GADP +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 281 KSAIDVA 287
K+ + +A
Sbjct: 71 KTPLHLA 77
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
A G+ D V+ LLE A+ N D+ TPLH AA G +V + + ++ + + +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDSD 69
Query: 91 GIGGGTGCPMH--------KDRSCYLAHGADPFLKNQEGQTPLDLTV 129
G P+H + L+ GADP K+ +G+TPL L
Sbjct: 70 GK-----TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G PLH A GH EV ++L+ GA+ N D TPL A EV LL +G
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L+EA G+ RVK L + G TPLH A + + K IV+ L+ KGA
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGH---KEIVKLLLSKGA 61
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
N K+ + P+H AA+ GH +++ LL GA N D G+T LH A + + V++
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 793 LLSHNAD--TSIVSLLVIFSCSTNLGLKHLLELFERE 827
LLS AD TS + G + +++L E++
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 43/168 (25%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAA------------------ 543
+ L EA + G+ +VK L+ N NA D+ GR TPLH+AA
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADPNASDSDGR--TPLHYAAENGHKEIVKLLLSKGADP 63
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
G PLH A GH E+ ++L+ GA+ N D TPLH AA K LL
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 591 QHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638
GAD N ++DG+T LDLA +H EE+++ GG L
Sbjct: 124 SKGADPNTSDSDGRTPLDLAR---------EHGNEEIVKLLEKQGGWL 162
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G KD V+ LL +GA +A D G PLH A GH ++V+LLL A+PN +D+ TPL
Sbjct: 15 GNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
Query: 62 HEAAAKGKTDVCIGIYF------AEHSSKSNQYVYGIGGGTGCPMHKD-RSCYLAHGADP 114
H AA G ++ + A+ S Y G HK+ L+ GADP
Sbjct: 75 HYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG-----HKEIVKLLLSKGADP 129
Query: 115 FLKNQEGQTPLDL 127
+ +G+TPLDL
Sbjct: 130 NTSDSDGRTPLDL 142
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 396 VVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLL 455
+ +L +L+EA++ G+ V LL + N D DGR TPLH+AA +V+ LL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD-PNASDSDGR--TPLHYAAENGHKEIVKLLL 57
Query: 456 AHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLT 515
+ GAD NA D G TPLH AA+ G + KG D
Sbjct: 58 SKGADP----NAKDSDGRTPLHYAAENGHKEIVK----------------LLLSKGAD-- 95
Query: 516 KVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADL 575
NA+D+ GR TPLH+AA GH E+ ++L+ GA+ N +D
Sbjct: 96 ----------PNAKDSDGR--TPLHYAA---------ENGHKEIVKLLLSKGADPNTSDS 134
Query: 576 WKFTPL 581
TPL
Sbjct: 135 DGRTPL 140
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ ++L+ GA+ NA D TPLH AA E+ LLLS+GADP
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 274 TLHNCHSKSAIDVA 287
+ ++ +D+A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ ++L+ GA+ NA D TPLH AA E+ LLLS+GADP
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Query: 274 TLHNCHSKSAIDVA 287
+ ++ + A
Sbjct: 97 NAKDSDGRTPLHYA 110
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 24/125 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GA+ N +D TPLH AA G +IV+LLL GADP+ K+ DG TPL E G +
Sbjct: 24 LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK 83
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
++ LL A + N +D+ GR TPLH AA E H + +
Sbjct: 84 EIVKLLLSKGA--------------------DPNAKDSDGR--TPLHYAA-ENGHKEIVK 120
Query: 1183 VTLGK 1187
+ L K
Sbjct: 121 LLLSK 125
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQDVS 1125
GA+ N D TPLH AA G +IV+LLL GADP+ + DG TPLDL RE G++++
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 1126 DLLRGNSALLD 1136
LL L+
Sbjct: 153 KLLEKQGGWLE 163
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G K++V+ LL+ GA +A+D G PLH A GH ++V+LLL A+PNT D+ TPL
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Query: 62 HEAAAKGKTDVC 73
A G ++
Sbjct: 141 DLAREHGNEEIV 152
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 62/185 (33%), Gaps = 72/185 (38%)
Query: 302 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQ 361
G L+EA G+ RVK L N P D
Sbjct: 5 GKRLIEAAENGNKDRVKDLLE----NGADPNASD-------------------------- 34
Query: 362 ATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSS 421
S G T L A EN K + +LL S
Sbjct: 35 -----------SDGRTPLHYAAENGHK-------------------------EIVKLLLS 58
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
N +D DGR TPLH+AA +V+ LL+ GAD NA D G TPLH AA+
Sbjct: 59 KGADPNAKDSDGR--TPLHYAAENGHKEIVKLLLSKGADP----NAKDSDGRTPLHYAAE 112
Query: 482 KGRTQ 486
G +
Sbjct: 113 NGHKE 117
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A G+ + + L++ GA+ NA D TPLH AA E+ LLLS+GADP +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 281 KSAIDVA 287
++ + A
Sbjct: 71 RTPLHYA 77
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYF------AEHSSK 84
A G+ D V+ LLE A+PN D+ TPLH AA G ++ + A+ S
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 85 SNQYVYGIGGGTGCPMHKD-RSCYLAHGADPFLKNQEGQTPL 125
Y G HK+ L+ GADP K+ +G+TPL
Sbjct: 71 RTPLHYAAENG-----HKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 101 HKDR-SCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPP 159
+KDR L +GADP + +G+TPL + +++ +++ GA A+ + P
Sbjct: 16 NKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK--GADPNAKDSDGRTP 73
Query: 160 SQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLH 219
Y+ + + V L + P A ++ G PLH
Sbjct: 74 LHYAAENGHKEI---------------VKLLLSKGADPNAKDSD----------GRTPLH 108
Query: 220 NACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
A GH E+ ++L+ GA+ N D TPL A E+ LL +G
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 114/290 (39%), Gaps = 72/290 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G + V LL GA I+ + GL LH AC + D+V+ L+E AN N DN + PL
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA+ G D+ +Y+ G G N EG
Sbjct: 111 HAAASCGYLDIA-------------EYLISQGAHVGAV------------------NSEG 139
Query: 122 QTPLDLTVAEDVRSLLQDAM----AQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPA 177
TPLD+ E + LLQ+ + A E + Q+ N+ ++V
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV------ 193
Query: 178 QYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAG 237
+++ SGG LH A + G+ EV ++LI+A
Sbjct: 194 RHAKSGG-------------------------------TALHVAAAKGYTEVLKLLIQAR 222
Query: 238 ANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
+VN D +TPLH AA + E C +L+ D N ++A DVA
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 35/258 (13%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A GD V RLL I N ++DG T LH A + V +V++L+ +GA+++
Sbjct: 44 FLAACSSGDTEEVLRLLERGADI-NYANVDGL--TALHQACIDDNVDMVKFLVENGANIN 100
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRE----LFEACKGGDLTKVK 518
DN G+ PLH AA G E L A + ++
Sbjct: 101 QPDNE----GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 519 KLVNPQTVNA------------RD-----TAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
VN Q V+ RD +G + H +G LH A + G+ EV +
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 562 MLVKHGANVNVADLWKFTPLH-------EAAAKALLQHGADINLKNTDGKTALDLAVPCT 614
+L++ +VN+ D +TPLH E A + L+++ D+ N G+TA D+A
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Query: 615 RAVLSGDHKKEELLEAAR 632
L KK+ LL + +
Sbjct: 277 LGYLEELQKKQNLLHSEK 294
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GL LH AC + ++ + L++ GAN+N D + PLH AAS L++ L+S+GA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCL-LEACRQGDPSRV-----KKFLTSDVVN 327
N + +D+A +++ L NE + +EA R+ + R+ +++L S +N
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-EEERIMLRDARQWLNSGHIN 191
Query: 328 -FKHPYTGDTPL 338
+H +G T L
Sbjct: 192 DVRHAKSGGTAL 203
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
G L AC GD V + L +N+ + G T LH A +V+ L+ G
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVD---MVKFLVENG 96
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
A++N+ + E P+H AA G+LD+ + L+ GA V V+ G T L
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 541 FAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHG 593
F G V L ACS G E L++ GA++N A++ T LH+A K L+++G
Sbjct: 38 FDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 594 ADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWC 653
A+IN + +G L A C ++ E L+ +G PL +
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIA-----EYLISQGAHVGAVNSEGDTPLDIAEEEAM 151
Query: 654 SCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRV-----KKFLTSDVVN-FKHPYTGDT 707
+ E+ + +EA R+ + R+ +++L S +N +H +G T
Sbjct: 152 EELLQNEVN---------RQGVDIEAARK-EEERIMLRDARQWLNSGHINDVRHAKSGGT 201
Query: 708 PLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKV 767
LH A Y + +++ LI+ +N K+ + P+H AA G + L+ +
Sbjct: 202 ALHVAAAKGYTE---VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 768 NLVDVLGQTALHRTARD 784
V+ +GQTA D
Sbjct: 259 EAVNKVGQTAFDVADED 275
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
V++GAN+N D + PLH AA+ G DI L+ GA N +G TPLD+
Sbjct: 93 VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
++ GA++N A++ T LH+A D+V+ L+++GA+ ++ + +G PL
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1069 NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
+VN+ D +TPLH AA GK + R+L+++ D N+ G T D+ E
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+H+AA G+ +VL L++ VN+ D G T LH A K +A R+L+ + D V+
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
Query: 805 LL--VIFSCSTNLGLKHLLELFEREQI 829
+ F + L +L EL +++ +
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKKQNL 289
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
T LH AAAKG ++++LL+Q D + K+ DG TPL
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 760 LLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
LL GA +N +V G TALH+ DD V+ L+ + A+ +
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
ACS G E L++ GA++N ++ T LH+A +++ L+ GA+
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA D G L PLH A H E+ E
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDKVG-----------LTPLHLAAMNDHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+K+GA+VN D TPLH A + LL+HGAD+N ++ GKTA D+++
Sbjct: 65 VLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 203 VIMPSGQAV----ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G V +GL PLH A H E+ E+L+K GA+VNA+D TPLH A
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 259 RLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
LE+ +LL GAD + K+A D++
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L+ GA +N ++K L P+HLAA HL++++ LL+ GA VN +D +G+T LH A
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
+ V VLL H AD + F S + G + L E+ ++
Sbjct: 90 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLE---IVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N + P+HL A GHL++++ LL+ GA VN D G+TA
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A D GL PLH A H ++V +LL+ A+ N D TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H A G ++ L HGAD +++ G
Sbjct: 85 HLVAMYGHLEIV-------------------------------EVLLKHGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D TPLH A G +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
+GA+VN D TPLH AA +IV +LL++GAD + + G TPL LV
Sbjct: 36 NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV 87
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 387 KKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRD---------------- 430
KKLL+ + D E ++L A+ G D+ ++ + H+ D
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 431 -LDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
+D TPLH A Y + +VE LL HGADV NA DK+G T + G
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADV----NAQDKFGKTAFDISIDNGN 125
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D TPLH AA LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ-DVSDLLRGN 1131
+DL K L EAA G+ D VR+L+ +GAD + +++ G TPL L D ++ ++L N
Sbjct: 12 SDLGK--KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 1132 SALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
A ++N DA G TPLHL A
Sbjct: 70 GA--------------------DVNAIDAIGE--TPLHLVA 88
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
AA G D + L+ GA VN D +G T LH A +D + V VLL + AD + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 16/135 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR ++V+ LL GA ++A + G PLH A S ++ +LLE ANP+ +D++ T +
Sbjct: 84 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 143
Query: 62 HEAAAKGKTDVC-IGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGA 112
H AAAKG + I +Y+ K++ + G T P+H ++ ++ GA
Sbjct: 144 HRAAAKGNLKMIHILLYY-----KASTNIQDTEGNT--PLHLACDEERVEEAKLLVSQGA 196
Query: 113 DPFLKNQEGQTPLDL 127
+++N+E +TPL +
Sbjct: 197 SIYIENKEEKTPLQV 211
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 52/188 (27%)
Query: 430 DLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXX 489
D D R T LH+A +VE+LL G V+ KD+A G++PLH AA GR
Sbjct: 37 DQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRD---- 86
Query: 490 XXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
E+ +A G VNA + G TPLH+AA
Sbjct: 87 --------------EIVKALLG----------KGAQVNAVNQNG--CTPLHYAA------ 114
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTD 602
S +E+ ML++ GAN + D ++ T +H AAAK LL + A N+++T+
Sbjct: 115 ---SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 171
Query: 603 GKTALDLA 610
G T L LA
Sbjct: 172 GNTPLHLA 179
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 50/192 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
V D D +PLH AA R +V+ LL GA V NA ++ G TPLH AA K R
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV----NAVNQNGCTPLHYAASKNRH 119
Query: 486 QXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L E GG NP +A+D H+ A
Sbjct: 120 EIAVM--------------LLE---GG--------ANP---DAKD---------HYEA-- 140
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
+H A + G+ ++ +L+ + A+ N+ D TPLH A AK L+ GA I +
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 200
Query: 599 KNTDGKTALDLA 610
+N + KT L +A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 46/208 (22%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADINLKN 600
LH ACS GH E+ E L++ G VN D ++PLH AA+ KALL GA +N N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 103
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKME 660
+G T L A R + A ++ GG +
Sbjct: 104 QNGCTPLHYAASKNRHEI-----------AVMLLEGGAN--------------------- 131
Query: 661 LMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKR 720
P KD ++ + A +G+ + L G+TPLH A +R
Sbjct: 132 ----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE---ER 184
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLA 748
+ L+ +GA + +NKE P+ +A
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE+LL G ++ +DD G PLH A S G ++V+ LL A N + TPL
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 110
Query: 62 HEAAAKGKTDVCIGIYF--AEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
H AA+K + ++ + + A +K + + K L + A +++
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 170
Query: 120 EGQTPLDLTVAED 132
EG TPL L E+
Sbjct: 171 EGNTPLHLACDEE 183
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S G E+ + L+ GA VNA++ TPLH AASK+R E+ +LL GA+P
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 274 TLHNCHSKSAIDVAPTR 290
+ + +A+ A +
Sbjct: 133 DAKDHYEATAMHRAAAK 149
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD----------- 1115
G VN D ++PLH AA+ G+ +IV+ LL GA + N++G TPL
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 1116 -LVREG--DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
++ EG + D D +A+ AA KGNL + LL + N +D +G +TPLHLA
Sbjct: 123 VMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHILLYYKASTNIQDTEG--NTPLHLA 179
Query: 1172 AGEKR 1176
E+R
Sbjct: 180 CDEER 184
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
AC G V+ L V G +PLH A ++ R IV++L+ KGA +N N
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG---RDEIVKALLGKGAQVNAVN 103
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ P+H AA ++ LL GA + D TA+HR A + + +LL + A
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 799 DTSI 802
T+I
Sbjct: 164 STNI 167
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
LH ACS GH E+ E L++ G VN D ++PLH AAS R E+ LL +GA
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S E+ ML++ GAN +A D ++ T +H AA+K L++ +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 165
Query: 274 TLHNCHSKSAIDVAPTRE 291
+ + + + +A E
Sbjct: 166 NIQDTEGNTPLHLACDEE 183
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + R I L+ GA+ + K+ +H AA G+L ++ LL
Sbjct: 106 GCTPLHYAASK---NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
A N+ D G T LH +++ + ++L+S A I
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
+H A + G+ ++ +L+ A+ N D TPLH A + R+E LL+S+GA + N
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 278 CHSKSAIDVA 287
K+ + VA
Sbjct: 203 KEEKTPLQVA 212
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 46/179 (25%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G +V LL VN + +G TPLH+AA NR + LL GA+ +KD
Sbjct: 80 AASAGRDEIVKALLGKGAQ-VNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
+ + T +H AA KG + L +
Sbjct: 137 H----YEATAMHRAAAKGNLKMIHIL----------------------------LYYKAS 164
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA 584
N +DT G PLH AC E ++LV GA++ + + + TPL A
Sbjct: 165 TNIQDTEGN-----------TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 719 KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
K + + ES++ + +++ +H A GH ++++ LL+LG VN D G + L
Sbjct: 18 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 77
Query: 779 HRTARDDKTQAVRVLLSHNADTSIVS 804
H A + + V+ LL A + V+
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVN 103
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
T LH A + G +IV LLQ G + K+ G +PL + SA D
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-------------SAGRDEI 88
Query: 1139 KKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRH 1177
K LG+ ++ + C TPLH AA + RH
Sbjct: 89 VKALLGKGAQVNAVNQNGC--------TPLHYAASKNRH 119
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
+ A+ N+ D TPLH A + + + +LL+ GA +N++ TPL + + G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 215
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 16/135 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR ++V+ LL GA ++A + G PLH A S ++ +LLE ANP+ +D++ T +
Sbjct: 85 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 144
Query: 62 HEAAAKGKTDVC-IGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGA 112
H AAAKG + I +Y+ K++ + G T P+H ++ ++ GA
Sbjct: 145 HRAAAKGNLKMIHILLYY-----KASTNIQDTEGNT--PLHLACDEERVEEAKLLVSQGA 197
Query: 113 DPFLKNQEGQTPLDL 127
+++N+E +TPL +
Sbjct: 198 SIYIENKEEKTPLQV 212
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 52/188 (27%)
Query: 430 DLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXX 489
D D R T LH+A +VE+LL G V+ KD+A G++PLH AA GR
Sbjct: 38 DQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRD---- 87
Query: 490 XXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
E+ +A G VNA + G TPLH+AA
Sbjct: 88 --------------EIVKALLG----------KGAQVNAVNQNG--CTPLHYAA------ 115
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTD 602
S +E+ ML++ GAN + D ++ T +H AAAK LL + A N+++T+
Sbjct: 116 ---SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 172
Query: 603 GKTALDLA 610
G T L LA
Sbjct: 173 GNTPLHLA 180
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 46/208 (22%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADINLKN 600
LH ACS GH E+ E L++ G VN D ++PLH AA+ KALL GA +N N
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 104
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKME 660
+G T L A R + A ++ GG +
Sbjct: 105 QNGCTPLHYAASKNRHEI-----------AVMLLEGGAN--------------------- 132
Query: 661 LMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKR 720
P KD ++ + A +G+ + L G+TPLH A +R
Sbjct: 133 ----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE---ER 185
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLA 748
+ L+ +GA + +NKE P+ +A
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 50/192 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
V D D +PLH AA R +V+ LL GA V NA ++ G TPLH AA K R
Sbjct: 65 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV----NAVNQNGCTPLHYAASKNRH 120
Query: 486 QXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L E GG NP +A+D H+ A
Sbjct: 121 EIAVM--------------LLE---GG--------ANP---DAKD---------HYEA-- 141
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
+H A + G+ ++ +L+ + A+ N+ D TPLH A AK L+ GA I +
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 201
Query: 599 KNTDGKTALDLA 610
+N + KT L +A
Sbjct: 202 ENKEEKTPLQVA 213
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE+LL G ++ +DD G PLH A S G ++V+ LL A N + TPL
Sbjct: 52 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 111
Query: 62 HEAAAKGKTDVCIGIYF--AEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
H AA+K + ++ + + A +K + + K L + A +++
Sbjct: 112 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 171
Query: 120 EGQTPLDLTVAED 132
EG TPL L E+
Sbjct: 172 EGNTPLHLACDEE 184
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S G E+ + L+ GA VNA++ TPLH AASK+R E+ +LL GA+P
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 274 TLHNCHSKSAIDVAPTR 290
+ + +A+ A +
Sbjct: 134 DAKDHYEATAMHRAAAK 150
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD----------- 1115
G VN D ++PLH AA+ G+ +IV+ LL GA + N++G TPL
Sbjct: 64 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 123
Query: 1116 -LVREG--DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
++ EG + D D +A+ AA KGNL + LL + N +D +G +TPLHLA
Sbjct: 124 VMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHILLYYKASTNIQDTEG--NTPLHLA 180
Query: 1172 AGEKR 1176
E+R
Sbjct: 181 CDEER 185
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
AC G V+ L V G +PLH A ++ R IV++L+ KGA +N N
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG---RDEIVKALLGKGAQVNAVN 104
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ P+H AA ++ LL GA + D TA+HR A + + +LL + A
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 799 DTSI 802
T+I
Sbjct: 165 STNI 168
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
LH ACS GH E+ E L++ G VN D ++PLH AAS R E+ LL +GA
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S E+ ML++ GAN +A D ++ T +H AA+K L++ +LL A
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 166
Query: 274 TLHNCHSKSAIDVAPTRE 291
+ + + + +A E
Sbjct: 167 NIQDTEGNTPLHLACDEE 184
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + R I L+ GA+ + K+ +H AA G+L ++ LL
Sbjct: 107 GCTPLHYAASK---NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
A N+ D G T LH +++ + ++L+S A I
Sbjct: 164 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 201
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
+H A + G+ ++ +L+ A+ N D TPLH A + R+E LL+S+GA + N
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 278 CHSKSAIDVA 287
K+ + VA
Sbjct: 204 KEEKTPLQVA 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 46/179 (25%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G +V LL VN + +G TPLH+AA NR + LL GA+ +KD
Sbjct: 81 AASAGRDEIVKALLGKGAQ-VNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
+ + T +H AA KG + L +
Sbjct: 138 H----YEATAMHRAAAKGNLKMIHIL----------------------------LYYKAS 165
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA 584
N +DT G PLH AC E ++LV GA++ + + + TPL A
Sbjct: 166 TNIQDTEGN-----------TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 719 KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
K + + ES++ + +++ +H A GH ++++ LL+LG VN D G + L
Sbjct: 19 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 78
Query: 779 HRTARDDKTQAVRVLLSHNADTSIVS 804
H A + + V+ LL A + V+
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVN 104
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
T LH A + G +IV LLQ G + K+ G +PL + SA D
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-------------SAGRDEI 89
Query: 1139 KKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRH 1177
K LG+ ++ + C TPLH AA + RH
Sbjct: 90 VKALLGKGAQVNAVNQNGC--------TPLHYAASKNRH 120
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
A+ N+ D TPLH A + + + +LL+ GA +N++ TPL + + G
Sbjct: 164 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 216
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ L ++ F + G +PLH A + + E L+R G
Sbjct: 3 GKKLLEAARAGQDDEVR-ILMANGAPFTTDWLGTSPLHLAAQYGHF---STTEVLLRAGV 58
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+ + K P+H+AA GH ++++ LL+ GA VN D+L TALH + + V +
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 793 LLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
L+ + AD S F S + G + L E+ +
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 33/140 (23%)
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL----------------- 545
++L EA + G +V+ L+ D G ++PLH AA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLG--TSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 546 -------VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQ 591
PLH A S GH + E+L+KHGA+VN D+ K T LH A + L++
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 592 HGADINLKNTDGKTALDLAV 611
+GAD++ ++ KTA D+++
Sbjct: 122 YGADVHTQSKFCKTAFDISI 141
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PLH A S GH + E+L+K GA+VNA D+ + T LH A + EV LL+ GAD
Sbjct: 70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 277 NCHSKSAIDVA 287
+ K+A D++
Sbjct: 130 SKFCKTAFDIS 140
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
LG PLH A YGHF TE+L++AG + +A TPLH AAS+ + +LL GAD
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D+ K T LH A ++V LL+++GAD +++ T D+ + G++
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 147 DLAEILQ 153
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA D G PLH A +GH +LL A + + R + TPL
Sbjct: 13 GQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL 71
Query: 62 HEAAAKGKTDVCIGI--YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
H AA++G ++ + + A+ ++K + + T + + +GAD +++
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Query: 120 EGQTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 132 FCKTAFDISIDNGNEDLAEILQ 153
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG E LL +G S AR PLH A S GHA++V +LL+ A+ N +D T
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103
Query: 61 LHEAAAKGKTDVC 73
LH A +V
Sbjct: 104 LHWATEHNHQEVV 116
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 47/174 (27%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V L+++ D ++PLH AA Y + E LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT----DWLGTSPLHLAAQYGHFSTTEVLLRA 56
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKV 517
G S+D T K TPLH AA +G + E
Sbjct: 57 GV---SRDART-KVDRTPLHMAASEGHAN------------------IVEVL-------- 86
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
L + VNA+D K T LH+ A + H EV E+L+K+GA+V+
Sbjct: 87 --LKHGADVNAKDML--KMTALHW---------ATEHNHQEVVELLIKYGADVH 127
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGD-QDVSDLL 1128
TPLH AA++G A+IV +LL+HGAD + K+ T L E + Q+V +LL
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSK 464
VN +D+ T LH+A +N VVE L+ +GADVH++
Sbjct: 93 VNAKDM--LKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 24/95 (25%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
L EAA G+ D VR+L+ +GA P + G +PL L AA+
Sbjct: 6 LLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHL--------------------AAQY 44
Query: 1141 GNLGRVQKLLTADNINCRDAQGR-NSTPLHLAAGE 1174
G+ + LL A RDA+ + + TPLH+AA E
Sbjct: 45 GHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASE 77
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 19/117 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L N VNA D G TPLH AA L GH E+ E
Sbjct: 16 KKLLEAARAGQDDEVRILTANGADVNANDYWGH--TPLHLAAML---------GHLEIVE 64
Query: 562 MLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+L+K+GA+VN TPLH AA + LL+HGAD+N ++ GKTA D+++
Sbjct: 65 VLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + Y G TPLH A + + IVE L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLE---IVEVLLKNGA 71
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
+N P+HLAA HL++++ LL+ GA VN D G+TA
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ E+L+K GA+VNA TPLH AA LE+ +LL GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V L GA +N + P+HLAA LGHL++++ LL+ GA VN G+T LH A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 784 DDKTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFER 826
D + V VLL H AD + F S + G + L E+ ++
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 34/140 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L A+GA ++A D G PLH A GH ++V +LL+ A+ N N TPL
Sbjct: 25 GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPL 84
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA +A+H L HGAD +++ G
Sbjct: 85 HLAA------------WADHLEIV-------------------EVLLKHGADVNAQDKFG 113
Query: 122 QTPLDLTV---AEDVRSLLQ 138
+T D+++ ED+ +LQ
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 51/124 (41%), Gaps = 43/124 (34%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACK 510
V L A+GADV NA D WG TPLH AA G E+ E
Sbjct: 30 VRILTANGADV----NANDYWGHTPLHLAAMLGHL------------------EIVEVL- 66
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L N VNA GR TPLH AA H E+ E+L+KHGA+V
Sbjct: 67 ---------LKNGADVNATGNTGR--TPLHLAA---------WADHLEIVEVLLKHGADV 106
Query: 571 NVAD 574
N D
Sbjct: 107 NAQD 110
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L++ VN D G TPLH AA + +VE LL +
Sbjct: 13 DLGKKLLEAARAGQDDEV-RILTANGADVNANDYWGH--TPLHLAAMLGHLEIVEVLLKN 69
Query: 458 GADVHSKDNATDKWGFTPLHEAA 480
GADV NAT G TPLH AA
Sbjct: 70 GADV----NATGNTGRTPLHLAA 88
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ-DV 1124
+GA+VN D W TPLH AA G +IV +LL++GAD + G TPL L D ++
Sbjct: 36 NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEI 95
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTADNIN 1156
++L + A ++A K G+ ++ DN N
Sbjct: 96 VEVLLKHGADVNAQDK--FGKTAFDISIDNGN 125
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN TPLH AA +IV +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 127 DLAEILQ 133
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L GA+VNA D W TPLH AA LE+ +LL GAD
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G + +V LL + VN GR TPLH AA + + +VE LL HGADV NA D
Sbjct: 58 GHLEIVEVLLKNGAD-VNATGNTGR--TPLHLAAWADHLEIVEVLLKHGADV----NAQD 110
Query: 470 KWGFTPLHEAAQKG 483
K+G T + G
Sbjct: 111 KFGKTAFDISIDNG 124
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 24/106 (22%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
L EAA G+ D VR+L +GAD + + G TPL L AA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHL--------------------AAML 57
Query: 1141 GNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
G+L V+ LL ++N GR TPLHLAA HL + V L
Sbjct: 58 GHLEIVEVLLKNGADVNATGNTGR--TPLHLAAWAD-HLEIVEVLL 100
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 16/147 (10%)
Query: 2 GRKDVVEYLLASG-ASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+YLL++G ++ +DDGG P+ A + H D+V+LLL ++ N RDN
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH----KDR-SC---YLAHGA 112
LH AA G C+ I ++K + + I G + P+H ++R C +L+ +
Sbjct: 148 LHWAAFSG----CVDIAEILLAAKCDLHAVNIHGDS--PLHIAARENRYDCVVLFLSRDS 201
Query: 113 DPFLKNQEGQTPLDL-TVAEDVRSLLQ 138
D LKN+EG+TPL ++ V S LQ
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQ 228
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 18/126 (14%)
Query: 1077 KFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGD--QDVSDLLR----- 1129
K +PLH AA G DI +L+Q GA+ + D TPL E + + V L++
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 1130 ------GNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAAGEKRHLLMC 1181
G++ L AAKKG+ VQ LL+ ++NC+D G TP+ + A E +H+ +
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW--TPM-IWATEYKHVDLV 127
Query: 1182 RVTLGK 1187
++ L K
Sbjct: 128 KLLLSK 133
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA--DP 273
PLH A GH ++ ML++AGAN++ Q TPL EAA + LE L+ GA DP
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 668 KDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFK-HPYTGDTPLHCAVTSPYPKRKAIVES 726
KD CL A ++G V+ L++ ++ G TP+ + + K +V+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM---IWATEYKHVDLVKL 129
Query: 727 LIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK 786
L+ KG+ +N ++ E +H AA G +D+ + LL ++ V++ G + LH AR+++
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 787 TQAVRVLLSHNADTSI 802
V + LS ++D ++
Sbjct: 190 YDCVVLFLSRDSDVTL 205
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADINLK 599
PLH A GH ++ MLV+ GAN++ + TPL EA A K L++ GA ++ K
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 600 NTDGKTALDLA 610
+ +G T L LA
Sbjct: 74 DAEGSTCLHLA 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 54/221 (24%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
D + L+EA++ + V L+ + +V+ +D +G ST LH AA VV+YLL++
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEG--STCLHLAAKKGHYEVVQYLLSN 99
Query: 458 G-ADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTK 516
G DV+ +D+ G+TP+ A + K DL K
Sbjct: 100 GQMDVNCQDDG----GWTPMIWATEY---------------------------KHVDLVK 128
Query: 517 VKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLW 576
+ L +N RD ++ LH+AA G ++ E+L+ +++ ++
Sbjct: 129 L-LLSKGSDINIRDN--EENICLHWAA---------FSGCVDIAEILLAAKCDLHAVNIH 176
Query: 577 KFTPLHEAAAK-------ALLQHGADINLKNTDGKTALDLA 610
+PLH AA + L +D+ LKN +G+T L A
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 83/204 (40%), Gaps = 57/204 (27%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
+PLH AA V + L+ GA++ D ++ TPL EAA+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI---DTCSED-QRTPLMEAAENNH------------ 56
Query: 497 XXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
EA K L K LV+P +D G ST LH AA GH
Sbjct: 57 ---------LEAVKY--LIKAGALVDP-----KDAEG--STCLHLAA---------KKGH 89
Query: 557 YEVTEMLVKHG-ANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDGKTALD 608
YEV + L+ +G +VN D +TP+ H K LL G+DIN+++ + L
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 609 LAVPCTRAVLSGDHKKEELLEAAR 632
A SG E+L AA+
Sbjct: 150 W------AAFSGCVDIAEILLAAK 167
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 697 VNFKHPYTGD-TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD 755
+NFK + +PLH A + + I L++ GA+++ +++ P+ AA+ HL+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVD---ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 756 VLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
+ L++ GA V+ D G T LH A+ + V+ LLS
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 54/218 (24%)
Query: 401 SQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
S L A++ G + + L+ + +I C + D R TPL AA N + V+YL+ GA
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQR--TPLMEAAENNHLEAVKYLIKAGAL 69
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKL 520
V KD G T LH AA+KG + L
Sbjct: 70 VDPKDAE----GSTCLHLAAKKGHYEVVQYL----------------------------L 97
Query: 521 VNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFT 579
N Q VN +D G TP+ +A Y H ++ ++L+ G+++N+ D +
Sbjct: 98 SNGQMDVNCQDDGGW--TPMIWAT---------EYKHVDLVKLLLSKGSDINIRDNEENI 146
Query: 580 PLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
LH AA A+ LL D++ N G + L +A
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 27/54 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
PL A H E + LIKAGA V+ D T LH AA K EV LLS G
Sbjct: 47 PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 180 SGSGGDSVSLPPTSPPQPLA----LETV--IMPSGQAV----ALGLVPLHNACSYGHFEV 229
+G+ D+ S +P A LE V ++ +G V A G LH A GH+EV
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 230 TEMLIKAG-ANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
+ L+ G +VN D +TP+ A +++ LLLS+G+D + +
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
+PLH AA + + D V L L +D + KN++G TPL Q V L+ + AL D+A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ-VWSALQMSKALQDSA 237
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG-AKVNLVDVLGQTALHRTA 782
V+ LI+ GA ++ K+ E +HLAA GH +V+ LL G VN D G T +
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 783 RDDKTQAVRVLLSHNADTSI 802
V++LLS +D +I
Sbjct: 120 EYKHVDLVKLLLSKGSDINI 139
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
PLH A GH D+ +L++A AN +T TPL EAA
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA 52
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHG-ADPSKKNRDGATPL-------- 1114
+K GA V+ D T LH AA KG ++V+ LL +G D + ++ G TP+
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 1115 -DLVREGDQDVSDL-LRGN--SALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHL 1170
DLV+ SD+ +R N + L A + ++L A + +PLH+
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 1171 AAGEKRH 1177
AA E R+
Sbjct: 184 AARENRY 190
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG-AHL 734
L+EA VK + + + G T LH A + + +V+ L+ G +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE---VVQYLLSNGQMDV 104
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
N ++ P+ A + H+D++ LL G+ +N+ D LH A +LL
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 795 SHNADTSIVSL 805
+ D V++
Sbjct: 165 AAKCDLHAVNI 175
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR ++V+ LL GA ++A + G PLH A S ++ +LLE ANP+ +D+++ T +
Sbjct: 84 GRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AAAKG + + F K++ + G T P+H ++ + GA
Sbjct: 144 HRAAAKGNLKMVHILLF----YKASTNIQDTEGNT--PLHLACDEERVEEAKFLVTQGAS 197
Query: 114 PFLKNQEGQTPLDL 127
+++N+E +TPL +
Sbjct: 198 IYIENKEEKTPLQV 211
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 52/188 (27%)
Query: 430 DLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXX 489
D D R T LH+A +VE+LL G V+ KD+A G++PLH AA GR
Sbjct: 37 DQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGRD---- 86
Query: 490 XXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
E+ +A LV VNA + G TPLH+AA
Sbjct: 87 --------------EIVKAL----------LVKGAHVNAVNQNG--CTPLHYAA------ 114
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTD 602
S +E+ ML++ GAN + D + T +H AAAK LL + A N+++T+
Sbjct: 115 ---SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 603 GKTALDLA 610
G T L LA
Sbjct: 172 GNTPLHLA 179
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE+LL G ++ +DD G PLH A S G ++V+ LL A+ N + TPL
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPL 110
Query: 62 HEAAAKGKTDVCIGIYF--AEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
H AA+K + ++ + + A +K + + K L + A +++
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 120 EGQTPLDLTVAED 132
EG TPL L E+
Sbjct: 171 EGNTPLHLACDEE 183
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
AC G V+ L V G +PLH A ++ R IV++L+ KGAH+N N
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG---RDEIVKALLVKGAHVNAVN 103
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ P+H AA ++ LL GA + D TA+HR A + V +LL + A
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 799 DTSI 802
T+I
Sbjct: 164 STNI 167
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 46/208 (22%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADINLKN 600
LH ACS GH E+ E L++ G VN D ++PLH AA+ KALL GA +N N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN 103
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKME 660
+G T L A R + A ++ GG +
Sbjct: 104 QNGCTPLHYAASKNRHEI-----------AVMLLEGGAN--------------------- 131
Query: 661 LMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKR 720
P KD + + A +G+ V L G+TPLH A +R
Sbjct: 132 ----PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE---ER 184
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLA 748
+ L+ +GA + +NKE P+ +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 50/192 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
V D D +PLH AA R +V+ LL GA V NA ++ G TPLH AA K R
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHV----NAVNQNGCTPLHYAASKNRH 119
Query: 486 QXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L E GG NP +A+D H+ A
Sbjct: 120 EIAVM--------------LLE---GG--------ANP---DAKD---------HYDA-- 140
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
+H A + G+ ++ +L+ + A+ N+ D TPLH A AK L+ GA I +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 599 KNTDGKTALDLA 610
+N + KT L +A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S G E+ + L+ GA+VNA++ TPLH AASK+R E+ +LL GA+P
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 274 TLHNCHSKSAIDVAPTR 290
+ + +A+ A +
Sbjct: 133 DAKDHYDATAMHRAAAK 149
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD--V 1124
G VN D ++PLH AA+ G+ +IV+ LL GA + N++G TPL ++
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 1125 SDLLRGN-----------SALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAA 1172
LL G +A+ AA KGNL V LL + N +D +G +TPLHLA
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG--NTPLHLAC 180
Query: 1173 GEKR 1176
E+R
Sbjct: 181 DEER 184
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
LH ACS GH E+ E L++ G VN D ++PLH AAS R E+ LL +GA
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S E+ ML++ GAN +A D + T +H AA+K L++ +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 274 TLHNCHSKSAIDVAPTRE 291
+ + + + +A E
Sbjct: 166 NIQDTEGNTPLHLACDEE 183
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 46/179 (25%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A+ G +V LL H VN + +G TPLH+AA NR + LL GA+ +KD
Sbjct: 80 AASAGRDEIVKALLVKGAH-VNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
+ + T +H AA KG + L +
Sbjct: 137 H----YDATAMHRAAAKGNLKMVHIL----------------------------LFYKAS 164
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA 584
N +DT G PLH AC E + LV GA++ + + + TPL A
Sbjct: 165 TNIQDTEGN-----------TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
+H A + G+ ++ +L+ A+ N D TPLH A + R+E L+++GA + N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 278 CHSKSAIDVA 287
K+ + VA
Sbjct: 203 KEEKTPLQVA 212
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+H A GH ++++ LL+LG VN D G + LH A + + V+ LL A + V+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN 103
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
+ A+ N+ D TPLH A + + + + L+ GA +N++ TPL + + G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 77/163 (47%), Gaps = 46/163 (28%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A++ G + VV LL + VN +D +GR TPLH AA + VV+ LL GADV
Sbjct: 9 AARNGHLEVVKLLLEAGAD-VNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGADV---- 61
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
NA DK G TPLH AA+ G + + L EA G D
Sbjct: 62 NAKDKNGRTPLHLAARNGHLE--------------VVKLLLEA--GAD------------ 93
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGA 568
VNA+D GR TPLH AA GH EV ++L++ GA
Sbjct: 94 VNAKDKNGR--TPLHLAA---------RNGHLEVVKLLLEAGA 125
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 679 ACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEK 737
A R G VK L + VN K G TPLH A + + + +V+ L+ GA +N K
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLE---VVKLLLEAGADVNAK 64
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
+K P+HLAA GHL+V+ LL GA VN D G+T LH AR+ + V++LL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G TPLH A + + + +V+ L+ GA +N K+K P+HLAA GHL+V+ LL
Sbjct: 1 NGRTPLHLAARNGHLE---VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
GA VN D G+T LH AR+ + V++LL AD +
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 31/127 (24%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TPL
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
H AA G +V L GAD K++ G
Sbjct: 73 HLAARNGHLEVV-------------------------------KLLLEAGADVNAKDKNG 101
Query: 122 QTPLDLT 128
+TPL L
Sbjct: 102 RTPLHLA 108
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TPL
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Query: 62 HEAAAKGKTDVC 73
H AA G +V
Sbjct: 106 HLAARNGHLEVV 117
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 19/114 (16%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
L A + G L VK L+ VNA+D GR TPLH A GH EV ++L
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLA---------ARNGHLEVVKLL 54
Query: 564 VKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
++ GA+VN D TPLH AA K LL+ GAD+N K+ +G+T L LA
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 274 TLHNCHSKSAIDVA 287
+ + ++ + +A
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 274 TLHNCHSKSAIDVA 287
+ + ++ + +A
Sbjct: 95 NAKDKNGRTPLHLA 108
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 17/121 (14%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL--------- 1128
TPLH AA G ++V+LLL+ GAD + K+++G TPL L R G +V LL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 1129 ---RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRVT 1184
G + L AA+ G+L V+ LL A ++N +D GR TPLHLAA HL + ++
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA-RNGHLEVVKLL 120
Query: 1185 L 1185
L
Sbjct: 121 L 121
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GA
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G PLH A GH EV ++L++ GA+VN D TPLH AA K LL+ GAD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 597 NLKNTDGKTALDLA 610
N K+ +G+T L LA
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
GA+VN D TPLH AA G ++V+LLL+ GA
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++V+ LL GA ++A + G PLH A S ++ +LLE ANP+ +D+++ T +
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KDRSCYLAHGAD 113
H AAAKG + + F K++ + G T P+H ++ + GA
Sbjct: 144 HRAAAKGNLKMVHILLF----YKASTNIQDTEGNT--PLHLACDEERVEEAKFLVTQGAS 197
Query: 114 PFLKNQEGQTPLDL 127
+++N+E +TPL +
Sbjct: 198 IYIENKEEKTPLQV 211
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 84/188 (44%), Gaps = 52/188 (27%)
Query: 430 DLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXX 489
D D R T LH+A +VE+LL G V+ KD+A G++PLH AA G
Sbjct: 37 DQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGXD---- 86
Query: 490 XXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
E+ +A LV VNA + G TPLH+AA
Sbjct: 87 --------------EIVKAL----------LVKGAHVNAVNQNG--CTPLHYAA------ 114
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTD 602
S +E+ ML++ GAN + D + T +H AAAK LL + A N+++T+
Sbjct: 115 ---SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 603 GKTALDLA 610
G T L LA
Sbjct: 172 GNTPLHLA 179
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++VE+LL G ++ +DD G PLH A S G ++V+ LL A+ N + TPL
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110
Query: 62 HEAAAKGKTDVCIGIYF--AEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
H AA+K + ++ + + A +K + + K L + A +++
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 120 EGQTPLDLTVAED 132
EG TPL L E+
Sbjct: 171 EGNTPLHLACDEE 183
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 46/208 (22%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADINLKN 600
LH ACS GH E+ E L++ G VN D ++PLH AA+ KALL GA +N N
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN 103
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKME 660
+G T L A R + A ++ GG +
Sbjct: 104 QNGCTPLHYAASKNRHEI-----------AVMLLEGGAN--------------------- 131
Query: 661 LMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKR 720
P KD + + A +G+ V L G+TPLH A +R
Sbjct: 132 ----PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE---ER 184
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLA 748
+ L+ +GA + +NKE P+ +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S G E+ + L+ GA+VNA++ TPLH AASK+R E+ +LL GA+P
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 274 TLHNCHSKSAIDVAPTR 290
+ + +A+ A +
Sbjct: 133 DAKDHYDATAMHRAAAK 149
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
AC G V+ L V G +PLH A ++ + IV++L+ KGAH+N N
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE---IVKALLVKGAHVNAVN 103
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ P+H AA ++ LL GA + D TA+HR A + V +LL + A
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 799 DTSI 802
T+I
Sbjct: 164 STNI 167
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 50/192 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
V D D +PLH AA +V+ LL GA V NA ++ G TPLH AA K R
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV----NAVNQNGCTPLHYAASKNRH 119
Query: 486 QXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L E GG NP +A+D H+ A
Sbjct: 120 EIAVM--------------LLE---GG--------ANP---DAKD---------HYDA-- 140
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
+H A + G+ ++ +L+ + A+ N+ D TPLH A AK L+ GA I +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 599 KNTDGKTALDLA 610
+N + KT L +A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD--V 1124
G VN D ++PLH AA+ G +IV+ LL GA + N++G TPL ++
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 1125 SDLLRGN-----------SALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAA 1172
LL G +A+ AA KGNL V LL + N +D +G +TPLHLA
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG--NTPLHLAC 180
Query: 1173 GEKR 1176
E+R
Sbjct: 181 DEER 184
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
LH ACS GH E+ E L++ G VN D ++PLH AAS E+ LL +GA
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S E+ ML++ GAN +A D + T +H AA+K L++ +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 274 TLHNCHSKSAIDVAPTRE 291
+ + + + +A E
Sbjct: 166 NIQDTEGNTPLHLACDEE 183
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 70/181 (38%), Gaps = 47/181 (25%)
Query: 404 LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHS 463
+ AS G D +V LL H VN + +G TPLH+AA NR + LL GA+ +
Sbjct: 79 IAASAGXD-EIVKALLVKGAH-VNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 464 KDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNP 523
KD+ + T +H AA KG + L
Sbjct: 135 KDH----YDATAMHRAAAKGNLKMVHIL----------------------------LFYK 162
Query: 524 QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHE 583
+ N +DT G PLH AC E + LV GA++ + + + TPL
Sbjct: 163 ASTNIQDTEGN-----------TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 584 A 584
A
Sbjct: 212 A 212
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + R I L+ GA+ + K+ +H AA G+L ++ LL
Sbjct: 106 GCTPLHYAASK---NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
A N+ D G T LH +++ + + L++ A I
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
+H A + G+ ++ +L+ A+ N D TPLH A + R+E L+++GA + N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 278 CHSKSAIDVA 287
K+ + VA
Sbjct: 203 KEEKTPLQVA 212
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+H A GH ++++ LL+LG VN D G + LH A + V+ LL A + V+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN 103
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
T LH A + G +IV LLQ G + K+ G +PL + AA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI--------------------AA 81
Query: 1139 KKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRH 1177
G V+ LL ++N + G TPLH AA + RH
Sbjct: 82 SAGXDEIVKALLVKGAHVNAVNQNG--CTPLHYAASKNRH 119
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
+ A+ N+ D TPLH A + + + + L+ GA +N++ TPL + + G
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 54/193 (27%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
VN DG S+PLH AA + R ++ LL HGA+ ++ NA PLH A Q+G
Sbjct: 79 VNVTSQDG--SSPLHVAALHGRADLIPLLLKHGANAGAR-NADQA---VPLHLACQQGHF 132
Query: 486 QXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTV-NARDTAGRKSTPLHFAAG 544
Q VK L++ N +D +G +TPL +A
Sbjct: 133 QV-----------------------------VKCLLDSNAKPNKKDLSG--NTPLIYA-- 159
Query: 545 LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADIN 597
CS GH+E+ +L++HGA++N ++ T LHEA + LL HGA +
Sbjct: 160 -------CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212
Query: 598 LKNTDGKTALDLA 610
+ N +TA+D A
Sbjct: 213 VLNKRQRTAVDCA 225
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINL 598
VPLH AC GH++V + L+ A N DL TPL H LLQHGA IN
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 599 KNTDGKTALDLAV 611
N G TAL AV
Sbjct: 181 SNNKGNTALHEAV 193
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+GR D++ LL GA+ AR+ PLH AC GH VV+ LL+++A PN +D TP
Sbjct: 96 HGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTP 155
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L +Y GG H+ + L HGA N +
Sbjct: 156 L---------------------------IYACSGG----HHELVALLLQHGASINASNNK 184
Query: 121 GQTPLDLTVAE 131
G T L V E
Sbjct: 185 GNTALHEAVIE 195
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PL ACS GH E+ +L++ GA++NA + T LHEA + + V LLL GA
Sbjct: 152 GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Query: 274 TLHNCHSKSAIDVA 287
+ N ++A+D A
Sbjct: 212 QVLNKRQRTAVDCA 225
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-REGDQDVS 1125
G VNV +PLH AA G+AD++ LLL+HGA+ +N D A PL L ++G V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 1126 DL------------LRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAA 1172
L GN+ L+ A G+ V LL +IN + +G +T LH A
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG--NTALHEAV 193
Query: 1173 GEKRHLLMCRVTL 1185
EK H+ + + L
Sbjct: 194 IEK-HVFVVELLL 205
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
VPLH AC GHF+V + L+ + A N DL TPL A S E+ +LLL GA
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 276 HNCHSKSAI 284
N +A+
Sbjct: 181 SNNKGNTAL 189
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G +PLH A R ++ L++ GA+ +N + P+HLA GH V+ LL
Sbjct: 86 GSSPLHVAALH---GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
AK N D+ G T L + V +LL H A
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1059 LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVR 1118
L P +KHGAN + + PLH A +G +V+ LL A P+KK+ G TPL
Sbjct: 101 LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC 160
Query: 1119 EG--DQDVSDLLRGNSALLDAAKKGN 1142
G + V+ LL+ +++ + KGN
Sbjct: 161 SGGHHELVALLLQHGASINASNNKGN 186
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 707 TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK 766
PLH A + + +V+ L+ A N+K+ P+ A GH +++ LL+ GA
Sbjct: 121 VPLHLACQQGHFQ---VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 767 VNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS---LLVIFSCSTNLGLKHLLEL 823
+N + G TALH + V +LL H A +++ + N + LL++
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQV 237
Query: 824 FEREQITLDILAEMNHEDLKQVGV 847
+LD +AE + ++ V +
Sbjct: 238 VPSCVASLDDVAETDRKEYVTVKI 261
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A +G ++ +L+K GAN A + Q PLH A + +V LL A P
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 274 T 274
Sbjct: 146 N 146
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
AC+QG VK L S+ K +G+TPL A + + + +V L++ GA +N N
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE---LVALLLQHGASINASN 182
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ +H A H+ V++ LL GA V +++ RTA D Q
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLN-----KRQRTAVDCAEQ---------- 227
Query: 799 DTSIVSLL-VIFSCSTNLGLKHLLELFEREQITLDI 833
++ I+ LL V+ SC +L + E +E +T+ I
Sbjct: 228 NSKIMELLQVVPSCVASLD--DVAETDRKEYVTVKI 261
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 668 KDEFKGHCLLEACRQGDPSRVKKFL---------TSDVVNFKHPYTGDTPLHCAVTSPYP 718
KD + LL A GD V+ L D V+ P C +P
Sbjct: 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQ 66
Query: 719 KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
KR A V + G +N +++ +P+H+AA G D++ LL+ GA + L
Sbjct: 67 KRLAKVPA---SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL 123
Query: 779 HRTARDDKTQAVRVLLSHNADTSIVSLL----VIFSCS 812
H + Q V+ LL NA + L +I++CS
Sbjct: 124 HLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS 161
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++HGA++N ++ T LHEA + +V LLL HGA N+ T +D E +
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA-EQNSK 230
Query: 1124 VSDLLR 1129
+ +LL+
Sbjct: 231 IMELLQ 236
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRL 296
G NV + D +PLH AA R ++ LLL GA N +++A P
Sbjct: 78 GVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGA-----NAGARNADQAVP-------- 122
Query: 297 SNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPL 338
L AC+QG VK L S+ K +G+TPL
Sbjct: 123 --------LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLL 44
G ++V LL GASI+A ++ G LH A H VV LLL
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TPL
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 62 HEAAAKGKTDVC 73
H AA G +V
Sbjct: 73 HLAARNGHLEVV 84
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G TPLH A + + + +V+ L+ GA +N K+K P+HLAA GHL+V+ LL
Sbjct: 1 NGRTPLHLAARNGHLE---VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
GA VN D G+T LH AR+ + V++LL
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 274 TLHNCHSKSAIDVA 287
+ + ++ + +A
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GA
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G PLH A GH EV ++L++ GA+VN D TPLH AA K LL+ GAD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 597 NLKNTDGKTALDLA 610
N K+ +G+T L LA
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 24/108 (22%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
TPLH AA G ++V+LLL+ GAD + K+++G TPL L AA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL--------------------AA 43
Query: 1139 KKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
+ G+L V+ LL A ++N +D GR TPLHLAA HL + ++ L
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA-RNGHLEVVKLLL 88
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 60/132 (45%), Gaps = 43/132 (32%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
TPLH AA + VV+ LL GADV NA DK G TPLH AA+ G +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLE---------- 49
Query: 497 XXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
+ L EA G D VNA+D GR TPLH AA GH
Sbjct: 50 ----VVKLLLEA--GAD------------VNAKDKNGR--TPLHLAA---------RNGH 80
Query: 557 YEVTEMLVKHGA 568
EV ++L++ GA
Sbjct: 81 LEVVKLLLEAGA 92
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A++ G + VV LL + VN +D +GR TPLH AA + VV+ LL GADV
Sbjct: 9 AARNGHLEVVKLLLEAGAD-VNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGADV---- 61
Query: 466 NATDKWGFTPLHEAAQKGRTQ 486
NA DK G TPLH AA+ G +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLE 82
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVS 1125
GA+VN D TPLH AA G ++V+LLL+ GAD + K+++G TPL L R G +V
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 1126 DLL 1128
LL
Sbjct: 85 KLL 87
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
P+HLAA GHL+V+ LL GA VN D G+T LH AR+ + V++LL AD +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 19/98 (19%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
L A + G L VK L+ VNA+D GR TPLH A GH EV ++L
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLA---------ARNGHLEVVKLL 54
Query: 564 VKHGANVNVADLWKFTPLHEAA-------AKALLQHGA 594
++ GA+VN D TPLH AA K LL+ GA
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSS 83
G PLH A GH +VV+LLLEA A+ N +D TPLH AA G +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV---------- 51
Query: 84 KSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLT 128
L GAD K++ G+TPL L
Sbjct: 52 ---------------------KLLLEAGADVNAKDKNGRTPLHLA 75
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 375 GYTALQVAGENSK----KLLQEPPSVVDLESQ-----LLEASKGGDMTVVTRLLSSCPHI 425
G T L +A N KLL E + V+ + + L A++ G + VV LL +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
VN +D +GR TPLH AA + VV+ LL GA
Sbjct: 61 VNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
GA+VN D TPLH AA G ++V+LLL+ GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 7 VEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAA 66
VEYLL +G+ + +D G PLH AC+ GH VV LLL+ A NT N +PLH+AA
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 67 KGKTDVCIGIYFAEHSSKSNQYVYGI 92
G D+ + + + +S++ ++G+
Sbjct: 86 NGHVDI-VKLLLSYGASRNAVNIFGL 110
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH AC++GH +V E+L++ A VN +PLH+AA +++ LLLS GA
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA-- 100
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLL 306
S++A+++ R + K LL
Sbjct: 101 ------SRNAVNIFGLRPVDYTDDESMKSLLLL 127
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGAD 595
AG PLH AC++GH +V E+L++H A VN +PLH+AA K LL +GA
Sbjct: 42 AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 596 INLKNTDGKTALD 608
N N G +D
Sbjct: 102 RNAVNIFGLRPVD 114
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 43/148 (29%)
Query: 434 RHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXX 493
R T LH A+ + VEYLL +G+D + KD+A G+TPLHEA G +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA----GWTPLHEACNHGHLKVV----- 59
Query: 494 XXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACS 553
EL L + K LVN T G ++ PLH+A
Sbjct: 60 ----------EL--------LLQHKALVN--------TTGYQNDS--------PLHDAAK 85
Query: 554 YGHYEVTEMLVKHGANVNVADLWKFTPL 581
GH ++ ++L+ +GA+ N +++ P+
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 702 PYT---GDTPLHCA-VTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVL 757
P+T G+T LH A + P VE L++ G+ N K+ P+H A + GHL V+
Sbjct: 4 PFTNHRGETLLHIASIKGDIPS----VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 758 DTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVI--FSCSTNL 815
+ LL+ A VN + LH A++ V++LLS+ A + V++ + + +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 816 GLKHLLELFEREQ 828
+K LL L E+ +
Sbjct: 120 SMKSLLLLPEKNE 132
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD 1115
++H A VN +PLH+AA G DIV+LLL +GA + N G P+D
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+++G++ NV D +TPLHEA G +V LLLQH A + +PL D + G
Sbjct: 30 LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89
Query: 1123 DVSDLL 1128
D+ LL
Sbjct: 90 DIVKLL 95
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQDVSDLL--------- 1128
T LH A+ KG V LLQ+G+DP+ K+ G TPL + G V +LL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 1129 ---RGNSALLDAAKKGNLGRVQKLLT 1151
+ +S L DAAK G++ V+ LL+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
LH A G V LL+ ++PN +D+ +TPLHEA G V +H + N
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV--ELLLQHKALVNT 71
Query: 88 YVYGIGGGTGCPMHKDR--------SCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLL 137
Y P+H L++GA N G P+D T E ++SLL
Sbjct: 72 TGY----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA------ 271
LH A G E L++ G++ N D +TPLHEA + L+V LLL A
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 272 ---DPTLHNCHSKSAIDVA 287
D LH+ +D+
Sbjct: 74 YQNDSPLHDAAKNGHVDIV 92
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G VVE LL A ++ PLH+A GH D+V+LLL A+ N + + P
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
Query: 61 L 61
+
Sbjct: 113 V 113
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADIN 597
LH A G E L+++G++ NV D +TPLHEA + LLQH A +N
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 665 PRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIV 724
P +KD L EAC G V+ L + Y D+PLH A +
Sbjct: 36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN--------- 86
Query: 725 ESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARD 784
GH+D++ LL GA N V++ G + T D
Sbjct: 87 ---------------------------GHVDIVKLLLSYGASRNAVNIFGLRPVDYT--D 117
Query: 785 DKTQAVRVLLSHNADTSIVS 804
D++ +LL ++S S
Sbjct: 118 DESMKSLLLLPEKNESSSAS 137
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 676 LLEACRQGDPSRVKKFL--TSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
+ CR+G+ V+ +L T + +N + G +PLH A R A+VE LI +GA
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACRE---GRSAVVEMLIMRGAR 64
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+N N+ P+HLAA GH D++ LL+ A +N V+ G LH + Q L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 794 LSHNADTSIVS 804
+++ A SI +
Sbjct: 125 VANGALVSICN 135
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADI 596
G PLH AC G V EML+ GA +NV + TPLH AA+ + LLQ+ ADI
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 597 NLKNTDGKTALDLA 610
N N G L A
Sbjct: 99 NAVNEHGNVPLHYA 112
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 33/66 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH AC G V EMLI GA +N M+ TPLH AAS ++ LL AD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 274 TLHNCH 279
N H
Sbjct: 99 NAVNEH 104
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR VVE L+ GA I+ + G PLH A S GH D+V+ LL+ A+ N + PL
Sbjct: 50 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 109
Query: 62 HEAAAKGKTDV 72
H A G+ V
Sbjct: 110 HYACFWGQDQV 120
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 53/206 (25%)
Query: 393 PPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVE 452
P + D+ +Q E G+ V L + + +N D G +PLH+A R AVVE
Sbjct: 3 PEFMDDIFTQCRE----GNAVAVRLWLDNTENDLNQGDDHG--FSPLHWACREGRSAVVE 56
Query: 453 YLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGG 512
L+ GA ++ + D TPLH AA G R++
Sbjct: 57 MLIMRGARINVMNRGDD----TPLHLAASHGH------------------RDI------- 87
Query: 513 DLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
V+KL+ + +NA + G VPLH AC +G +V E LV +GA V+
Sbjct: 88 ----VQKLLQYKADINAVNEHGN-----------VPLHYACFWGQDQVAEDLVANGALVS 132
Query: 572 VADLWKFTPLHEAAA--KALLQHGAD 595
+ + + P+ +A A + LL+ A+
Sbjct: 133 ICNKYGEMPVDKAKAPLRELLRERAE 158
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ GA +NV + TPLH AA+ G DIV+ LLQ+ AD + N G PL QD
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 1124 -VSDLLRGNSALLDAAKK 1140
V++ L N AL+ K
Sbjct: 119 QVAEDLVANGALVSICNK 136
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PLH A S+GH ++ + L++ A++NA++ PLH A + +V L++ GA ++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 276 HNCHSKSAID--VAPTREL 292
N + + +D AP REL
Sbjct: 134 CNKYGEMPVDKAKAPLREL 152
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80
DD G PLH AC G + VV +L+ A N + + TPLH AA+ G D+
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV------- 88
Query: 81 HSSKSNQY---VYGIGGGTGCPMHKDRSCY----------LAHGADPFLKNQEGQTPLDL 127
K QY + + P+H +C+ +A+GA + N+ G+ P+D
Sbjct: 89 --QKLLQYKADINAVNEHGNVPLHY--ACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144
Query: 128 TVAEDVRSLLQD 139
A +R LL++
Sbjct: 145 AKAP-LRELLRE 155
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 1069 NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLL 1128
++N D F+PLH A +G++ +V +L+ GA + NR TPL L
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL------------ 78
Query: 1129 RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
AA G+ VQKLL +IN + G + PLH A
Sbjct: 79 --------AASHGHRDIVQKLLQYKADINAVNEHG--NVPLHYA 112
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G +D+V+ LL A I+A ++ G PLH AC +G V L+ A + + + P
Sbjct: 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Query: 61 LHEAAA 66
+ +A A
Sbjct: 142 VDKAKA 147
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR 259
G VPLH AC +G +V E L+ GA V+ + + P+ +A + R
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 676 LLEACRQGDPSRVKKFL--TSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
+ CR+G+ V+ +L T + +N + G +PLH A R A+VE LI +GA
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACRE---GRSAVVEMLIMRGAR 59
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+N N+ P+HLAA GH D++ LL+ A +N V+ G LH + Q L
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 794 LSHNADTSIVS 804
+++ A SI +
Sbjct: 120 VANGALVSICN 130
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADI 596
G PLH AC G V EML+ GA +NV + TPLH AA+ + LLQ+ ADI
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 597 NLKNTDGKTALDLA 610
N N G L A
Sbjct: 94 NAVNEHGNVPLHYA 107
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 33/66 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH AC G V EMLI GA +N M+ TPLH AAS ++ LL AD
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 274 TLHNCH 279
N H
Sbjct: 94 NAVNEH 99
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
GR VVE L+ GA I+ + G PLH A S GH D+V+ LL+ A+ N + PL
Sbjct: 45 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 104
Query: 62 HEAAAKGKTDV 72
H A G+ V
Sbjct: 105 HYACFWGQDQV 115
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ + G+ V L + + +N D G +PLH+A R AVVE L+ GA ++
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHG--FSPLHWACREGRSAVVEMLIMRGARIN 61
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVN 522
+ D TPLH AA G R++ V+KL+
Sbjct: 62 VMNRGDD----TPLHLAASHGH------------------RDI-----------VQKLLQ 88
Query: 523 PQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
+ +NA + G VPLH AC +G +V E LV +GA V++ + + P+
Sbjct: 89 YKADINAVNEHGN-----------VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Query: 582 HEAAA--KALLQHGAD 595
+A A + LL+ A+
Sbjct: 138 DKAKAPLRELLRERAE 153
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ GA +NV + TPLH AA+ G DIV+ LLQ+ AD + N G PL QD
Sbjct: 54 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 113
Query: 1124 -VSDLLRGNSALLDAAKK 1140
V++ L N AL+ K
Sbjct: 114 QVAEDLVANGALVSICNK 131
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80
DD G PLH AC G + VV +L+ A N + + TPLH AA+ G D+
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV------- 83
Query: 81 HSSKSNQY---VYGIGGGTGCPMHKDRSCY----------LAHGADPFLKNQEGQTPLDL 127
K QY + + P+H +C+ +A+GA + N+ G+ P+D
Sbjct: 84 --QKLLQYKADINAVNEHGNVPLHY--ACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 139
Query: 128 TVAEDVRSLLQD 139
A +R LL++
Sbjct: 140 AKAP-LRELLRE 150
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PLH A S+GH ++ + L++ A++NA++ PLH A + +V L++ GA ++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 276 HNCHSKSAID--VAPTREL 292
N + + +D AP REL
Sbjct: 129 CNKYGEMPVDKAKAPLREL 147
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 1069 NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLL 1128
++N D F+PLH A +G++ +V +L+ GA + NR TPL L
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL------------ 73
Query: 1129 RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
AA G+ VQKLL +IN + G + PLH A
Sbjct: 74 --------AASHGHRDIVQKLLQYKADINAVNEHG--NVPLHYA 107
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G +D+V+ LL A I+A ++ G PLH AC +G V L+ A + + + P
Sbjct: 77 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 136
Query: 61 LHEAAA 66
+ +A A
Sbjct: 137 VDKAKA 142
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR 259
G VPLH AC +G +V E L+ GA V+ + + P+ +A + R
Sbjct: 100 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 145
>pdb|4HKI|C Chain C, Tankyrase 2 In Complex With Flavone
pdb|4HKI|D Chain D, Tankyrase 2 In Complex With Flavone
pdb|4HKK|B Chain B, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|D Chain D, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|C Chain C, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|C Chain C, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|D Chain D, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|D Chain D, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|D Chain D, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|D Chain D, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|D Chain D, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|C Chain C, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 49
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/33 (75%), Positives = 27/33 (81%)
Query: 1196 KMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
KMAH+PPGHHSV GRPS GL EYV+YRGEQ
Sbjct: 1 KMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQ 33
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 98/227 (43%), Gaps = 26/227 (11%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD-V 461
L++A + D+ +V +LL + VN ++ +G TPLH A +R +VE LL HGAD V
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXX----XXRELFEACKGGDLTKV 517
K N G TP AA G + EA G + +
Sbjct: 87 LRKKN-----GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 141
Query: 518 KKLVNP-QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-KHGANVNVAD- 574
K L VN R L G L +A GH EV ++L+ + GA+VN D
Sbjct: 142 KFLYKRGANVNLRRKTKEDQERLR-KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 575 LWKFTPLH----------EAAAKALLQHGADINLKNTDGKTALDLAV 611
+ + +H EA LL HGAD+N++ GKT L LAV
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 674 HCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
H L++A + D V++ L VNF+ G TPLH AV R+ IVE L+R GA
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS---REDIVELLLRHGA 83
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+ K P LAA G + +L L GA VN D G TA A K +A++
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 793 LLSHNADTSI 802
L A+ ++
Sbjct: 144 LYKRGANVNL 153
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 1067 GANVNV-ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATP------------ 1113
GANVN + +TPLH A + DIV LLL+HGADP + ++GATP
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107
Query: 1114 LDLVREGDQDVSDL-LRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLH-- 1169
L L DV++ G +A ++AA G + ++ L N+N R + L
Sbjct: 108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 1170 -----LAAGEKRHLLMCRVTLGKSFLQFNA 1194
+ A EK H+ + ++ L + NA
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNA 197
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 5 DVVEYLLASGASIH-ARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
D+V+ LL GA+++ ++GG PLHNA D+V LLL A+P R TP
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98
Query: 64 AAAKGKTDVCIGIYFAEHSSKSNQYVYGI 92
AA G + + ++ ++ + + YG
Sbjct: 99 AAIAGSVKL-LKLFLSKGADVNECDFYGF 126
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 228 EVTEMLIKAGANVNAMDL-WQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDV 286
++ + L++ GANVN + +TPLH A SR ++ LLL GADP L + + +
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98
Query: 287 A----PTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTL 342
A + L+ LS KG + E G + ++ + V K Y +
Sbjct: 99 AAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV---- 151
Query: 343 LIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENS-----KKLLQEPPSVV 397
++ +E ++ + GG TAL A E K LL E + V
Sbjct: 152 ----------------NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195
Query: 398 DLESQL--------LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVA 449
+ + L +S D+ +T LL VN R G+ TPL A +
Sbjct: 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK--TPLILAVEKKHLG 253
Query: 450 VVEYLLAHGADVHSKDNATDKWGFTPL 476
+V+ LL H + N TD G T L
Sbjct: 254 LVQRLLEQE---HIEINDTDSDGKTAL 277
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
R+D+VE LL GA R G P A G +++L L A+ N D + FT
Sbjct: 71 REDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 130
Query: 63 EAAAKGKTDVCIGIY 77
EAA GK +Y
Sbjct: 131 EAAVYGKVKALKFLY 145
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 1065 KHGANVNVADLWK----------FTPLHEAAAKGKADIVRLLL-QHGADPSKKNRDGATP 1113
K GANVN+ K T L +AA KG +++++LL + GAD + + G
Sbjct: 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205
Query: 1114 L--DLVREGDQDVSDLL---------------RGNSALLDAAKKGNLGRVQKLLTADNIN 1156
L L+ D DV + RG + L+ A +K +LG VQ+LL ++I
Sbjct: 206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265
Query: 1157 CRDAQGRNSTPLHLA 1171
D T L LA
Sbjct: 266 INDTDSDGKTALLLA 280
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P A G ++ ++ + GA+VN D + FT EAA +++ L GA+
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFL 321
L T+E Q+RL + L++A +G +K L
Sbjct: 152 NLRR----------KTKEDQERL-RKGGATALMDAAEKGHVEVLKILL 188
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLHNA ++ E+L++ GA+ TP AA +++ L LS+GAD
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 98/228 (42%), Gaps = 26/228 (11%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD-V 461
L++A + D+ +V +LL + VN ++ +G TPLH A +R +VE LL HGAD V
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXX----XXRELFEACKGGDLTKV 517
K N G TP AA G + EA G + +
Sbjct: 67 LRKKN-----GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 518 KKLVNP-QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-KHGANVNVAD- 574
K L VN R L G L +A GH EV ++L+ + GA+VN D
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLR-KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 575 LWKFTPLH----------EAAAKALLQHGADINLKNTDGKTALDLAVP 612
+ + +H EA LL HGAD+N++ GKT L LAV
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 674 HCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
H L++A + D V++ L VNF+ G TPLH AV R+ IVE L+R GA
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS---REDIVELLLRHGA 63
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
+ K P LAA G + +L L GA VN D G TA A K +A++
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 793 LLSHNADTSI 802
L A+ ++
Sbjct: 124 LYKRGANVNL 133
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1059 LTPHNVKHGANVNVADL---WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATP-- 1113
L ++ GANVN + W TPLH A + DIV LLL+HGADP + ++GATP
Sbjct: 20 LVQQLLEGGANVNFQEEEGGW--TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL 77
Query: 1114 ----------LDLVREGDQDVSDL-LRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQ 1161
L L DV++ G +A ++AA G + ++ L N+N R
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 1162 GRNSTPLH-------LAAGEKRHLLMCRVTLGKSFLQFNA 1194
+ L + A EK H+ + ++ L + NA
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 5 DVVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
D+V+ LL GA+++ +++ GG PLHNA D+V LLL A+P R TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78
Query: 64 AAAKGKTDVCIGIYFAEHSSKSNQYVYGI 92
AA G + + ++ ++ + + YG
Sbjct: 79 AAIAGSVKL-LKLFLSKGADVNECDFYGF 106
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 108/279 (38%), Gaps = 50/279 (17%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDL---WQFTPLHEAASKSRLEVCSLLLSEGADPT 274
L A ++ + L++ GANVN + W TPLH A SR ++ LLL GADP
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW--TPLHNAVQMSREDIVELLLRHGADPV 66
Query: 275 LHNCHSKSAIDVA----PTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKH 330
L + + +A + L+ LS KG + E G + ++ + V K
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 331 PYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENS---- 386
Y + ++ +E ++ + GG TAL A E
Sbjct: 124 LYKRGANV--------------------NLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163
Query: 387 -KKLLQEPPSVVDLESQL--------LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHST 437
K LL E + V+ + L +S D+ +T LL VN R G+ T
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK--T 221
Query: 438 PLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPL 476
PL A + +V+ LL H + N TD G T L
Sbjct: 222 PLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTAL 257
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
R+D+VE LL GA R G P A G +++L L A+ N D + FT
Sbjct: 51 REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 110
Query: 63 EAAAKGKTDVCIGIY 77
EAA GK +Y
Sbjct: 111 EAAVYGKVKALKFLY 125
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 1065 KHGANVNVADLWK----------FTPLHEAAAKGKADIVRLLL-QHGADPSKKNRDGATP 1113
K GANVN+ K T L +AA KG +++++LL + GAD + + G
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Query: 1114 L--DLVREGDQDVSDLL---------------RGNSALLDAAKKGNLGRVQKLLTADNIN 1156
L L+ D DV + RG + L+ A +K +LG VQ+LL ++I
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 1157 CRDAQGRNSTPLHLA 1171
D T L LA
Sbjct: 246 INDTDSDGKTALLLA 260
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P A G ++ ++ + GA+VN D + FT EAA +++ L GA+
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKG--HCLLEACRQGDPSRVKKFL 321
L T+E Q+RL KG L++A +G +K L
Sbjct: 132 NLRR----------KTKEDQERLR---KGGATALMDAAEKGHVEVLKILL 168
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLHNA ++ E+L++ GA+ TP AA +++ L LS+GAD
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G+ LHNA GH E+ + L++ G NVNA D +TPLH AAS + ++VC L+ GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADI 596
G+ LHNA GH E+ + LV+ G NVN AD +TPLH AA+ K L++ GA +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 597 -NLKNTDGKTALD 608
+ +D +TA D
Sbjct: 130 FAMTYSDMQTAAD 142
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D+V+ ++ +D G+ LHNA GH ++V+ L++ N N D+ +TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 62 HEAAAKGKTDVC 73
H AA+ VC
Sbjct: 108 HCAASCNNVQVC 119
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 707 TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK 766
PL + S +V+ +I + + N E + +H A GH +++ L++ G
Sbjct: 36 NPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 767 VNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
VN D G T LH A + Q + L+ A
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 403 LLEASKGGDMTVVTRLLSSC--PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
LL++S G+ +V R++ P + N + T LH A +V++L+ G +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI-----TALHNAVCAGHTEIVKFLVQFGVN 95
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQ 486
V NA D G+TPLH AA Q
Sbjct: 96 V----NAADSDGWTPLHCAASCNNVQ 117
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
T LH A G +IV+ L+Q G + + + DG TPL
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
V+ G NVN AD +TPLH AA+ + + L++ GA
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 30/112 (26%)
Query: 1064 VKHGANVNVADLWKFTPLH---EAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
+ HG V KF PL +++ +G+ D+V+ ++ DPS N +G T
Sbjct: 27 IAHGMRV------KFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT-------- 72
Query: 1121 DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
AL +A G+ + K L +N A TPLH AA
Sbjct: 73 ------------ALHNAVCAGHT-EIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G+ LHNA GH E+ + L++ G NVNA D +TPLH AAS + ++VC L+ GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADI 596
G+ LHNA GH E+ + LV+ G NVN AD +TPLH AA+ K L++ GA +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 597 -NLKNTDGKTALD 608
+ +D +TA D
Sbjct: 130 FAMTYSDMQTAAD 142
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D+V+ ++ +D G+ LHNA GH ++V+ L++ N N D+ +TPL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 62 HEAAAKGKTDVC 73
H AA+ VC
Sbjct: 108 HCAASCNNVQVC 119
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 708 PLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKV 767
PL + S +V+ +I + + N E + +H A GH +++ L++ G V
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 768 NLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
N D G T LH A + Q + L+ A
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 403 LLEASKGGDMTVVTRLLSSC--PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
LL++S G+ +V R++ P + N + T LH A +V++L+ G +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI-----TALHNAVCAGHTEIVKFLVQFGVN 95
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQ 486
V NA D G+TPLH AA Q
Sbjct: 96 V----NAADSDGWTPLHCAASCNNVQ 117
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
T LH A G +IV+ L+Q G + + + DG TPL
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
V+ G NVN AD +TPLH AA+ + + L++ GA
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
+E A K GDL +VK V + VN GRK PLH A G E+ E
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK-----------PLHYAADCGQLEILE 52
Query: 562 MLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDGKTALD 608
L+ GA++N D TPL H + K LL GAD +K DG TAL+
Sbjct: 53 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A G E+ E L+ GA++NA D TPL A + + LLLS+GAD
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 274 TLHNCHSKSAIDVAPTRELQQRLS 297
T+ +A++ + ++ L
Sbjct: 95 TVKGPDGLTALEATDNQAIKALLQ 118
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V+ + KG +N + P+H AAD G L++L+ LL GA +N D T L
Sbjct: 18 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 77
Query: 784 DDKTQAVRVLLSHNADTSIVSL--LVIFSCSTNLGLKHLLE 822
+ V++LLS AD ++ L + N +K LL+
Sbjct: 78 EGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 31/137 (22%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D V+ +A G ++ +GG PLH A G +++ LL A+ N D + TPL
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
A +G C+ + L+ GAD +K +G
Sbjct: 73 LSAVYEGHVS-CVKL------------------------------LLSKGADKTVKGPDG 101
Query: 122 QTPLDLTVAEDVRSLLQ 138
T L+ T + +++LLQ
Sbjct: 102 LTALEATDNQAIKALLQ 118
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
+ + + A K GD+ V ++ + R L+G PLH+AA ++ ++E+LL GA
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRK-PLHYAADCGQLEILEFLLLKGA 59
Query: 460 DVHSKDNATDKWGFTPLHEAAQKG 483
D+ NA DK TPL A +G
Sbjct: 60 DI----NAPDKHHITPLLSAVYEG 79
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD 1115
GA++N D TPL A +G V+LLL GAD + K DG T L+
Sbjct: 58 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
+ A + GD VK ++ + G PLH A + I+E L+ KGA +N
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG---QLEILEFLLLKGADIN 62
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
+K + P+ A GH+ + LL GA + G TAL T QA++ LL
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALLQ 118
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
+E A K GDL +VK V + VN GRK PLH A G E+ E
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK-----------PLHYAADCGQLEILE 57
Query: 562 MLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDGKTALD 608
L+ GA++N D TPL H + K LL GAD +K DG TA +
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A G E+ E L+ GA++NA D TPL A + + LLLS+GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 274 TLHNCHSKSAIDVAPTRELQQRL 296
T+ +A + + ++ L
Sbjct: 100 TVKGPDGLTAFEATDNQAIKALL 122
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
V+ + KG +N + P+H AAD G L++L+ LL GA +N D T L
Sbjct: 23 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82
Query: 784 DDKTQAVRVLLSHNADTSIVSL--LVIFSCSTNLGLKHLLE 822
+ V++LLS AD ++ L F + N +K LL+
Sbjct: 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
+ + + A K GD+ V ++ + R L+G PLH+AA ++ ++E+LL GA
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRK-PLHYAADCGQLEILEFLLLKGA 64
Query: 460 DVHSKDNATDKWGFTPLHEAAQKG 483
D+ NA DK TPL A +G
Sbjct: 65 DI----NAPDKHHITPLLSAVYEG 84
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D V+ +A G ++ +GG PLH A G +++ LL A+ N D + TPL
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
A +G C+ + L+ GAD +K +G
Sbjct: 78 LSAVYEGHVS-CVKL------------------------------LLSKGADKTVKGPDG 106
Query: 122 QTPLDLTVAEDVRSLLQ 138
T + T + +++LLQ
Sbjct: 107 LTAFEATDNQAIKALLQ 123
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD 1115
GA++N D TPL A +G V+LLL GAD + K DG T +
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
+ A + GD VK ++ + G PLH A + I+E L+ KGA +N
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC---GQLEILEFLLLKGADIN 67
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+K + P+ A GH+ + LL GA + G TA T QA++ LL
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT----DNQAIKALL 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA + A+D G PLH A GH +VV+LLLEA A+ N +D + T
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
Query: 62 HEAAAKGKTDVC 73
+ G D+
Sbjct: 77 DISIDNGNEDLA 88
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + V +D +G STPLH AA + VV+ LL
Sbjct: 5 DLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEA 61
Query: 458 GADVHSKDNATDKWGFTPL 476
GADV NA DK+G T
Sbjct: 62 GADV----NAQDKFGKTAF 76
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDV 1124
+GA+V D TPLH AA G ++V+LLL+ GAD + +++ G T D+ + G++D+
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDL 87
Query: 1125 SDLLR 1129
+++L+
Sbjct: 88 AEILQ 92
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
L A G + +L+ GA+V A D TPLH AA LEV LLL GAD
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 277 NCHSKSAIDVA 287
+ K+A D++
Sbjct: 69 DKFGKTAFDIS 79
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
V L+ GA + K+K P+HLAA GHL+V+ LL GA VN D G+TA
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 203 VIMPSGQAVAL----GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G VA G PLH A GH EV ++L++AGA+VNA D + T +
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG 83
Query: 259 RLEVCSLL 266
++ +L
Sbjct: 84 NEDLAEIL 91
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N V A+D G STPLH A GH EV +
Sbjct: 8 KKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLA---------ARNGHLEVVK 56
Query: 562 MLVKHGANVNVADLWKFTPL 581
+L++ GA+VN D + T
Sbjct: 57 LLLEAGADVNAQDKFGKTAF 76
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLK 599
L A G + +L+ +GA+V D TPLH AA K LL+ GAD+N +
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 600 NTDGKTALDLAV 611
+ GKTA D+++
Sbjct: 69 DKFGKTAFDISI 80
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGN 1131
+DL K L EAA G+ D VR+L+ +GAD + K+++G+TPL L R G +V LL
Sbjct: 4 SDLGK--KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 1132 SALLDAAKKGNLGRVQKLLTADNIN 1156
A ++A K G+ ++ DN N
Sbjct: 62 GADVNAQDK--FGKTAFDISIDNGN 84
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + + +V+ L+ GA
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---VVKLLLEAGA 63
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTL 760
+N ++K ++ D G+ D+ + L
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+TPLH A + + + V+ L+ KGA +N ++K+ P+HLAA GH +++ LL G
Sbjct: 9 GNTPLHNAAKNGHAEE---VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
A VN G T H ++ + V++L + AD + S
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLHNA GH E + L+ GA+VNA TPLH AA E+ LLL++GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G PLHNA GH E + L+ GA+VN TPLH AA K LL GAD+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 597 NLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEA 630
N ++ DG T P A +G H+ +LL+A
Sbjct: 69 NARSKDGNT------PEHLAKKNGHHEIVKLLDA 96
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
D + L A+K G V +LLS VN R DG +TPLH AA +V+ LLA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDG--NTPLHLAAKNGHAEIVKLLLAK 64
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKG 483
GADV NA K G TP H A + G
Sbjct: 65 GADV----NARSKDGNTPEHLAKKNG 86
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
L A + G VKK L+ G+TPLH A + + + IV+ L+ KGA +N
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE---IVKLLLAKGADVN 69
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
++K+ P HLA GH +++ L GA VN
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G + V+ LL+ GA ++AR G PLH A GHA++V+LLL A+ N R TP
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 62 HEAAAKGKTDVC 73
H A G ++
Sbjct: 80 HLAKKNGHHEIV 91
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQDVS 1125
GA+VN TPLH AA G A+IV+LLL GAD + +++DG TP L ++ G ++
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIV 91
Query: 1126 DLLRGNSALLDA 1137
LL A ++A
Sbjct: 92 KLLDAKGADVNA 103
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ ++L+ GA+VNA TP H A E+ LL ++GAD
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 25/104 (24%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
TPLH AA G A+ V+ LL GAD + +++DG TPL L AA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL--------------------AA 50
Query: 1139 KKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAAGEKRHLLM 1180
K G+ + KLL A ++N R G +TP HLA H ++
Sbjct: 51 KNGH-AEIVKLLLAKGADVNARSKDG--NTPEHLAKKNGHHEIV 91
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
PLHNA GHA+ V+ LL A+ N R TPLH AA G ++
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTR 53
G ++V+ LLA GA ++AR G P H A GH ++V+LL A+ N R
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 48/136 (35%)
Query: 472 GFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT-VNARD 530
G TPLH AA+ G + +VKKL++ VNAR
Sbjct: 9 GNTPLHNAAKNGHAE-----------------------------EVKKLLSKGADVNARS 39
Query: 531 TAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA----- 585
G +TPLH AA GH E+ ++L+ GA+VN TP H A
Sbjct: 40 KDG--NTPLHLAA---------KNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88
Query: 586 --AKALLQHGADINLK 599
K L GAD+N +
Sbjct: 89 EIVKLLDAKGADVNAR 104
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 371 GQSGGYTALQVAGENS-----KKLLQEPPSV----VDLESQLLEASKGGDMTVVTRLLSS 421
G G T L A +N KKLL + V D + L A+K G +V LL+
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFT 474
VN R DG +TP H A +V+ L A GADV+++ WG +
Sbjct: 65 GAD-VNARSKDG--NTPEHLAKKNGHHEIVKLLDAKGADVNARS-----WGSS 109
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTLGK 1187
GN+ L +AAK G+ V+KLL+ ++N R G +TPLHLAA + H + ++ L K
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAA-KNGHAEIVKLLLAK 64
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 42/185 (22%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L +A + V LL S P ++ +D DGR PLH++ + + +LL+ +V+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVN 522
D D G+TP H A C G+L VK L +
Sbjct: 64 LDDYPDDS-GWTPFHIA-----------------------------CSVGNLEVVKSLYD 93
Query: 523 -PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
P + + T LH A G +EV++ L+++GA+V + D + PL
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVG---------KKWFEVSQFLIENGASVRIKDKFNQIPL 144
Query: 582 HEAAA 586
H AA+
Sbjct: 145 HRAAS 149
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 2 GRK--DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE-ADANPNTRDNWNF 58
G+K +V ++L+ +GAS+ +D PLH A S G ++ LL + N +D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 59 TPLHEAAAKGKTDVCIGI---YFAEHSSKSNQ 87
TPL A A+G D + + Y AE+ N+
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G+ LH A FEV++ LI+ GA+V D + PLH AAS L++ LL G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 505 LFEACKGGDLTKVKKLVN--PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM 562
L +AC + KV++L++ P + +D GR +PLH + S+ +E+T
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-----------IPLHWSVSFQAHEITSF 54
Query: 563 LVKHGANVNVADL-----WKFTPLHEAAA-------KALLQH--GADINLKNTDGKTALD 608
L+ NVN+ D W TP H A + K+L D+N G T L
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 609 LAV 611
LAV
Sbjct: 113 LAV 115
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G T LH AV + + + + LI GA + K+K P+H AA +G L +++ L LG
Sbjct: 107 GVTCLHLAVGKKWFE---VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 765 -AKVNLVDVLGQTAL-HRTARDDKTQAVRVLLSHNADTSIV 803
+ VN D G T L H A AV ++ + A+ +V
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-----WQFTPLHEAASKSRLEVCSLLLS 268
G +PLH + S+ E+T L+ NVN D W TP H A S LEV L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYD 93
Query: 269 EGADPTLH 276
P L+
Sbjct: 94 RPLKPDLN 101
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 5 DVVEYLLASGASIHARD---DGGLHPLHNACSFGHADVVRLLLEADANP--NTRDNWNFT 59
++ +LL+ +++ D D G P H ACS G+ +VV+ L + P N N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSS------KSNQYVYGIGGGTGCPMHKDRSCYLAHGAD 113
LH A GK + + E+ + K NQ G + C L A
Sbjct: 110 CLHLAV--GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 114 PFLKNQEGQTPLDLTVAE 131
+ ++++G TPL +AE
Sbjct: 168 NW-QDKQGWTPLFHALAE 184
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 44/170 (25%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A G++ VV L P + + + T LH A G V ++L+ +GA V K
Sbjct: 79 ACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
DK+ PLH AA G + L E G +
Sbjct: 137 ---DKFNQIPLHRAASVGSLK------------------LIELLCG---------LGKSA 166
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-KHGANVNVAD 574
VN +D G PL +A + GH + +LV K+GA ++ D
Sbjct: 167 VNWQDK-----------QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADP-SKKNRDGATPL-DLVREGD 1121
+++GA+V + D + PLH AA+ G ++ LL G + +++ G TPL + EG
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 1122 QDVSDLL 1128
D + LL
Sbjct: 187 GDAAVLL 193
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRK--GAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
+G TP H A + +V+SL + LN+ + + +HLA +V L+
Sbjct: 71 SGWTPFHIACSV---GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
GA V + D Q LHR A + + +L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 42/185 (22%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L +A + V LL S P ++ +D DGR PLH++ + + +LL+ +V+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVN 522
D D G+TP H A C G+L VK L +
Sbjct: 64 LDDYPDDS-GWTPFHIA-----------------------------CSVGNLEVVKSLYD 93
Query: 523 -PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
P + + T LH A G +EV++ L+++GA+V + D + PL
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVG---------KKWFEVSQFLIENGASVRIKDKFNQIPL 144
Query: 582 HEAAA 586
H AA+
Sbjct: 145 HRAAS 149
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 2 GRK--DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE-ADANPNTRDNWNF 58
G+K +V ++L+ +GAS+ +D PLH A S G ++ LL + N +D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 59 TPLHEAAAKGKTDVCIGI---YFAEHSSKSNQ 87
TPL A A+G D + + Y AE+ N+
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G+ LH A FEV++ LI+ GA+V D + PLH AAS L++ LL G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 505 LFEACKGGDLTKVKKLVN--PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM 562
L +AC + KV++L++ P + +D GR +PLH + S+ +E+T
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-----------IPLHWSVSFQAHEITSF 54
Query: 563 LVKHGANVNVADL-----WKFTPLHEAAA-------KALLQH--GADINLKNTDGKTALD 608
L+ NVN+ D W TP H A + K+L D+N G T L
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 609 LAV 611
LAV
Sbjct: 113 LAV 115
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G T LH AV + + + + LI GA + K+K P+H AA +G L +++ L LG
Sbjct: 107 GVTCLHLAVGKKWFE---VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 765 -AKVNLVDVLGQTAL-HRTARDDKTQAVRVLLSHNADTSIV 803
+ VN D G T L H A AV ++ + A+ +V
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-----WQFTPLHEAASKSRLEVCSLLLS 268
G +PLH + S+ E+T L+ NVN D W TP H A S LEV L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYD 93
Query: 269 EGADPTLH 276
P L+
Sbjct: 94 RPLKPDLN 101
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 5 DVVEYLLASGASIHARD---DGGLHPLHNACSFGHADVVRLLLEADANP--NTRDNWNFT 59
++ +LL+ +++ D D G P H ACS G+ +VV+ L + P N N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSS------KSNQYVYGIGGGTGCPMHKDRSCYLAHGAD 113
LH A GK + + E+ + K NQ G + C L A
Sbjct: 110 CLHLAV--GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 114 PFLKNQEGQTPLDLTVAE 131
+ ++++G TPL +AE
Sbjct: 168 NW-QDKQGWTPLFHALAE 184
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 44/166 (26%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATD 469
G++ VV L P + + + T LH A G V ++L+ +GA V K D
Sbjct: 83 GNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK----D 137
Query: 470 KWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNAR 529
K+ PLH AA G + L E G + VN +
Sbjct: 138 KFNQIPLHRAASVGSLK------------------LIELLCG---------LGKSAVNWQ 170
Query: 530 DTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-KHGANVNVAD 574
D G PL +A + GH + +LV K+GA ++ D
Sbjct: 171 DK-----------QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADP-SKKNRDGATPL-DLVREGD 1121
+++GA+V + D + PLH AA+ G ++ LL G + +++ G TPL + EG
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 1122 QDVSDLL 1128
D + LL
Sbjct: 187 GDAAVLL 193
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRK--GAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
+G TP H A + +V+SL + LN+ + + +HLA +V L+
Sbjct: 71 SGWTPFHIACSV---GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
GA V + D Q LHR A + + +L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 42/185 (22%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L +A + V LL S P ++ +D DGR PLH++ + + +LL+ +V+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVN 522
D D G+TP H A C G+L VK L +
Sbjct: 64 LDDYPDDS-GWTPFHIA-----------------------------CSVGNLEVVKSLYD 93
Query: 523 -PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
P + + T LH A G +EV++ L+++GA+V + D + PL
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVG---------KKWFEVSQFLIENGASVRIKDKFNQIPL 144
Query: 582 HEAAA 586
H AA+
Sbjct: 145 HRAAS 149
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 2 GRK--DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE-ADANPNTRDNWNF 58
G+K +V ++L+ +GAS+ +D PLH A S G ++ LL + N +D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 59 TPLHEAAAKGKTDVCIGI---YFAEHSSKSNQ 87
TPL A A+G D + + Y AE+ N+
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G+ LH A FEV++ LI+ GA+V D + PLH AAS L++ LL G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 505 LFEACKGGDLTKVKKLVN--PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM 562
L +AC + KV++L++ P + +D GR +PLH + S+ +E+T
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-----------IPLHWSVSFQAHEITSF 54
Query: 563 LVKHGANVNVADL-----WKFTPLHEAAA-------KALLQH--GADINLKNTDGKTALD 608
L+ NVN+ D W TP H A + K+L D+N G T L
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 609 LAV 611
LAV
Sbjct: 113 LAV 115
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G T LH AV + + + + LI GA + K+K P+H AA +G L +++ L LG
Sbjct: 107 GVTCLHLAVGKKWFE---VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 765 -AKVNLVDVLGQTAL-HRTARDDKTQAVRVLLSHNADTSIV 803
+ VN D G T L H A AV ++ + A+ +V
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-----WQFTPLHEAASKSRLEVCSLLLS 268
G +PLH + S+ E+T L+ NVN D W TP H A S LEV L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYD 93
Query: 269 EGADPTLH 276
P L+
Sbjct: 94 RPLKPDLN 101
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 5 DVVEYLLASGASIHARD---DGGLHPLHNACSFGHADVVRLLLEADANP--NTRDNWNFT 59
++ +LL+ +++ D D G P H ACS G+ +VV+ L + P N N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSS------KSNQYVYGIGGGTGCPMHKDRSCYLAHGAD 113
LH A GK + + E+ + K NQ G + C L A
Sbjct: 110 CLHLAV--GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 114 PFLKNQEGQTPLDLTVAE 131
+ ++++G TPL +AE
Sbjct: 168 NW-QDKQGWTPLFHALAE 184
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A G++ VV L P + + + T LH A G V ++L+ +GA V K
Sbjct: 79 ACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 466 NATDKWGFTPLHEAAQKG 483
DK+ PLH AA G
Sbjct: 137 ---DKFNQIPLHRAASVG 151
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADP-SKKNRDGATPL-DLVREGD 1121
+++GA+V + D + PLH AA+ G ++ LL G + +++ G TPL + EG
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 1122 QDVSDLL 1128
D + LL
Sbjct: 187 GDAAVLL 193
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRK--GAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
+G TP H A + +V+SL + LN+ + + +HLA +V L+
Sbjct: 71 SGWTPFHIACSV---GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
GA V + D Q LHR A + + +L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA + A+D G PLH A GH +VV+LLLEA A+ +D + T
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
Query: 62 HEAAAKGKTDVC 73
+ G D+
Sbjct: 95 DISIDNGNEDLA 106
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+V A D TPLH AA LEV LLL GAD +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 278 CHSKSAIDVA 287
K+A D++
Sbjct: 88 KFGKTAFDIS 97
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDV 1124
+GA+V D TPLH AA G ++V+LLL+ GAD +++ G T D+ + G++D+
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Query: 1125 SDLLR 1129
+++L+
Sbjct: 106 AEILQ 110
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + V +D +G STPLH AA + VV+ LL
Sbjct: 23 DLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEA 79
Query: 458 GADVHSKDNATDKWGFTPL 476
GADV A DK+G T
Sbjct: 80 GADVX----AQDKFGKTAF 94
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
V L+ GA + K+K P+HLAA GHL+V+ LL GA V D G+TA
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 203 VIMPSGQAVAL----GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258
++M +G VA G PLH A GH EV ++L++AGA+V A D + T +
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Query: 259 RLEVCSLL 266
++ +L
Sbjct: 102 NEDLAEIL 109
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1073 ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGN 1131
+DL K L EAA G+ D VR+L+ +GAD + K+++G+TPL L R G +V LL
Sbjct: 22 SDLGK--KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 1132 SALLDAAKKGNLGRVQKLLTADNIN 1156
A D + G+ ++ DN N
Sbjct: 80 GA--DVXAQDKFGKTAFDISIDNGN 102
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKN 600
L A G + +L+ +GA+V D TPLH AA K LL+ GAD+ ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 601 TDGKTALDLAV 611
GKTA D+++
Sbjct: 88 KFGKTAFDISI 98
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N V A+D G STPLH A GH EV +
Sbjct: 26 KKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLA---------ARNGHLEVVK 74
Query: 562 MLVKHGANVNVADLWKFTPL 581
+L++ GA+V D + T
Sbjct: 75 LLLEAGADVXAQDKFGKTAF 94
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G LLEA R G V+ + + G TPLH A + + + +V+ L+ GA
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---VVKLLLEAGA 81
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTL 760
+ ++K ++ D G+ D+ + L
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 727 LIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDD 785
L+ +G+H+ ++ K+LL AA G D + L+ GA V D G T LH AR+
Sbjct: 13 LVPRGSHMGSDLGKKLLE----AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Query: 786 KTQAVRVLLSHNADTSIVSLL--VIFSCSTNLGLKHLLELFE 825
+ V++LL AD F S + G + L E+ +
Sbjct: 69 HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
V L+ GA +N K+K+ P+HLAA GHL++++ LL+ GA VN D G+TA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G+ D V L+A+GA ++A+D G PLH A GH ++V +LL+A A+ N +D + T
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Query: 62 HEAAAKGKTDV 72
+ G D+
Sbjct: 73 DISIDNGNEDL 83
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDV 1124
+GA+VN D +TPLH AA +G +IV +LL+ GAD + +++ G T D+ + G++D+
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 83
Query: 1125 SDLLR 1129
+++L+
Sbjct: 84 AEILQ 88
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
DL +LLEA++ G V R+L + VN +D DG TPLH AA + +VE LL
Sbjct: 1 DLGKKLLEAARAGQDDEV-RILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKA 57
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKG 483
GADV NA DK+G T + G
Sbjct: 58 GADV----NAQDKFGKTAFDISIDNG 79
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A G + +L+ GA+VNA D +TPLH AA + LE+ +LL GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 278 CHSKSAIDVA 287
K+A D++
Sbjct: 66 KFGKTAFDIS 75
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGNSALLDAAK 1139
L EAA G+ D VR+L+ +GAD + K++DG TPL L REG ++ ++L A ++A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 1140 KGNLGRVQKLLTADNIN 1156
K G+ ++ DN N
Sbjct: 66 K--FGKTAFDISIDNGN 80
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKN 600
L A G + +L+ +GA+VN D +TPLH AA + LL+ GAD+N ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAA 631
GKTA D+++ +G+ E+L+ A
Sbjct: 66 KFGKTAFDISID------NGNEDLAEILQKA 90
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 503 RELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
++L EA + G +V+ L+ N VNA+D G TPLH AA GH E+ E
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAA---------REGHLEIVE 52
Query: 562 MLVKHGANVNVAD 574
+L+K GA+VN D
Sbjct: 53 VLLKAGADVNAQD 65
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD 244
G PLH A GH E+ E+L+KAGA+VNA D
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
V L+A+GADV NA DK G+TPLH AA++G +
Sbjct: 18 VRILMANGADV----NAKDKDGYTPLHLAAREGHLE 49
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLL- 806
AA G D + L+ GA VN D G T LH AR+ + V VLL AD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 807 -VIFSCSTNLGLKHLLELFER 826
F S + G + L E+ ++
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
L A G D VR+L+ A+ N +D +TPLH AA +G ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI 50
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQHGADI 596
G+ LHNA +Y + + L+ GANVN D +TPLH AA+ AL+QHGA I
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 597 NLKN-TDGKTALDLAVP 612
+DG TA + P
Sbjct: 114 FATTLSDGATAFEKCDP 130
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G+ LHNA ++ + + LI AGANVN+ D +TPLH AAS + +C L+ GA
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI 76
++ G+ LHNA + +V L+ A AN N+ D+ +TPLH AA+ T +C+ +
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN-RDGATPL---DLVRE 1119
+ GANVN D +TPLH AA+ I L+QHGA DGAT D RE
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133
Query: 1120 GDQDVSDLL 1128
G D + L
Sbjct: 134 GYADCATYL 142
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 723 IVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTA 782
+V+ +++ ++ N+E + +H A + ++D L+ GA VN D G T LH A
Sbjct: 36 VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95
Query: 783 RDDKTQAVRVLLSHNADTSIVSL 805
+ T L+ H A +L
Sbjct: 96 SCNDTVICMALVQHGAAIFATTL 118
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LL+A+ G++ VV + + + + + T LH A ++V++L+ GA+V+
Sbjct: 25 LLDAALTGELEVVQQAVK---EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81
Query: 463 SKDNATDKWGFTPLHEAA 480
S D+ G+TPLH AA
Sbjct: 82 SPDSH----GWTPLHCAA 95
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PL +A + ++L++ GANVNA + LH A+ + L + L+ GAD
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 274 TLHNCHSKSAIDVAPTREL 292
+L NCH+ + + VA +R +
Sbjct: 210 SLKNCHNDTPLMVARSRRV 228
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++HGANVN + LH A+ +G +VR L++ GAD S KN TPL + R +
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS--RR 227
Query: 1124 VSDLLRGNS 1132
V D+LRG +
Sbjct: 228 VIDILRGKA 236
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 70/184 (38%), Gaps = 18/184 (9%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
TPLH A +VV L+ GA A D+ G T H A +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGA----SPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Query: 497 XXXXXXRELFEACKGGDLTKVKKLVNPQ---TVNARDTAGRKSTPLHFAAGLVPLHNACS 553
EA LT + VN + TV G + +G PL +A
Sbjct: 104 PGTLD----LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 554 YGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALL-------QHGADINLKNTDGKTA 606
+ ++L++HGANVN + LH A+ + LL + GAD +LKN T
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 607 LDLA 610
L +A
Sbjct: 220 LMVA 223
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQ-FTPLHEAASKSRLEVCSLLLSEGAD 272
GL LH A + E ++L++ GA+++A+D+ +PL A + L + LLL GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 273 PTLHNCHSKSAIDVAPTREL 292
SA+ A R L
Sbjct: 176 VNAQMYSGSSALHSASGRGL 195
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+V+ LL GA+++A+ G LH+A G +VR L+ + A+ + ++ N TPL A
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
Query: 66 AKGKTDVCIG 75
++ D+ G
Sbjct: 225 SRRVIDILRG 234
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 679 ACRQGDPSRVKKFLTSDVVNF----KHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
AC P+ ++ L S Y G T LH AV + + + V+ L+ +GA +
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT---ECQETVQLLLERGADI 142
Query: 735 NEKN-KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+ + K +P+ A + L ++ LL+ GA VN G +ALH + VR L
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
Query: 794 LSHNADTSI 802
+ AD+S+
Sbjct: 203 VRSGADSSL 211
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 705 GDTPLHCAVTS-PYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
GDTPLH AV P +V + G L+ N P+HLA V+ L+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
GA +D GQTA H +R LL A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 98/275 (35%), Gaps = 94/275 (34%)
Query: 214 GLVPLHNACSYGHFEVTEMLI----KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSE 269
G PLH A G+ L+ + G ++ + + TPLH A + V LL++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 270 GADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFK 329
GA P + H ++A + AC P+ ++ L
Sbjct: 69 GASPMALDRHGQTAAHL---------------------ACEHRSPTCLRALL-------- 99
Query: 330 HPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKL 389
D+ PGTL ++ + D G TAL VA +
Sbjct: 100 -----DSAAPGTLDLEARNYD------------------------GLTALHVAVNTECQ- 129
Query: 390 LQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDL-DGRHSTPLHFAAGYNRV 448
E+ L +G D+ V D+ GR +PL A N +
Sbjct: 130 ----------ETVQLLLERGADIDAV--------------DIKSGR--SPLIHAVENNSL 163
Query: 449 AVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
++V+ LL HGA+V NA G + LH A+ +G
Sbjct: 164 SMVQLLLQHGANV----NAQMYSGSSALHSASGRG 194
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
G +++ + + TPLH A +VRLL+ GA P +R G T L E
Sbjct: 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC- 94
Query: 1127 LLRGNSALLDAAKKGNL 1143
LR ALLD+A G L
Sbjct: 95 -LR---ALLDSAAPGTL 107
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 4 KDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
++ V+ LL GA I A D G PL +A +V+LLL+ AN N + + LH
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 188
Query: 63 EAAAKG 68
A+ +G
Sbjct: 189 SASGRG 194
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 1064 VKHGANVNVADLWK-FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
++ GA+++ D+ +PL A +V+LLLQHGA+ + + G++ L
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIR-KGAHLNEKNKELLAPIHLAADLGHLDVLDTLLR 762
TG TPLH AV + + + L+R + +LN + + P+ LAA L +++ L+
Sbjct: 83 TGRTPLHAAVAADA---MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A +N D G+TALH A + T+AV +LL H+A+
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+VE L+ + A I+A D+ G LH A + + + V +LL AN + +D+ + TPL AA
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 66 AKGK 69
+G
Sbjct: 193 REGS 196
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 6 VVEYLLASGAS-IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V + LL + A+ ++AR G PL A +V L+ ADA+ N DN T LH A
Sbjct: 99 VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA 158
Query: 65 AAKGKTDVCIGIYFAEHSSKSNQ 87
AA T+ + I H+++ Q
Sbjct: 159 AAVNNTE-AVNILLMHHANRDAQ 180
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSD 1126
A++N AD T LH AAA + V +LL H A+ ++ TPL L REG + S
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 201
Query: 1127 LLRGNSA 1133
L N A
Sbjct: 202 ALLDNFA 208
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 1041 GGLETGTXXXXXNMYYGTLTPHNVKHGANVNVA-DLWKFTPLHEAAAKGKADIVRLLLQH 1099
GGL+TG + + GA +N D T LH AA +AD + LL
Sbjct: 14 GGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 73
Query: 1100 GADPSKKNRDGATPLDLVREGDQD--VSDLLR------------GNSALLDAAKKGNLGR 1145
GAD + ++ G TPL D LLR G + L+ AA+ G
Sbjct: 74 GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGM 133
Query: 1146 VQKLLTAD-NINCRDAQGRNSTPLHLAAG 1173
V+ L+TAD +IN D G+ T LH AA
Sbjct: 134 VEDLITADADINAADNSGK--TALHWAAA 160
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 6 VVEYLLASGASIHAR-DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ LLA GA ++A D G LH A F AD + LL+A A+ N++DN TPLH A
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 65 AA 66
A
Sbjct: 92 VA 93
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
+N D G+ T LH+AA N V LL H H+ +A D TPL AA++G
Sbjct: 144 INAADNSGK--TALHWAAAVNNTEAVNILLMH----HANRDAQDDKDETPLFLAAREG 195
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 82/205 (40%), Gaps = 30/205 (14%)
Query: 404 LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHS 463
+E ++ V++ LL+ + D G T LH AA + R + LL GAD +S
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGE--TSLHLAARFARADAAKRLLDAGADANS 79
Query: 464 KDNATDKWGFTPLHEAAQKG-----RTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVK 518
+DN G TPLH A + L A + V+
Sbjct: 80 QDNT----GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 135
Query: 519 KLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
L+ +NA D +G+ T LH+AA + + E +L+ H AN + D
Sbjct: 136 DLITADADINAADNSGK--TALHWAAAV---------NNTEAVNILLMHHANRDAQDDKD 184
Query: 578 FTPLHEA-------AAKALLQHGAD 595
TPL A A+KALL + A+
Sbjct: 185 ETPLFLAAREGSYEASKALLDNFAN 209
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 30/199 (15%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
+ R D + T LH+AA NR+ +V+Y ++ GA V D TPLH A ++G
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV---DQLGGDLNSTPLHWATRQGHLS 90
Query: 487 XXXXXXXXXXXXXXXXRE----LFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHF 541
E + A + G + V L+ Q V+ D G TPL +
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM--TPLMW 148
Query: 542 AAGLVPLHNACSYGHYEV--TEMLVKHGANVNVADLW-KFTPLHEAAAKA-------LLQ 591
AA Y + V T +L+ +VN+ D + K T LH A LL+
Sbjct: 149 AA----------YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 592 HGADINLKNTDGKTALDLA 610
GA+++ +N G++ALDLA
Sbjct: 199 AGANVDAQNIKGESALDLA 217
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 669 DEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGD-TPLHCAVTSPYPKRKAIVESL 727
D++ +++A + G R ++ + + + + P + T LH A + R +V+
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAAIN---NRIDLVKYY 61
Query: 728 IRKGAHLNEKNKELLA-PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK 786
I KGA +++ +L + P+H A GHL ++ L++ GA +L+D G + +H A+
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 787 TQAVRVLLSHNADTSIVS---------------------LLVIFSCSTNLGLKH 819
T V L++ D ++ LL+ F+ S NLG K+
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 398 DLESQLLE-ASKGGDMTVVTRLLS--SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYL 454
DL S L A++ G +++V +L+ + P ++ DG + +H AA + ++V YL
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-----DGEGCSCIHLAAQFGHTSIVAYL 128
Query: 455 LAHGADVHSKDNATDKWGFTPLHEAAQK 482
+A G DV + D+ G TPL AA +
Sbjct: 129 IAKGQDV----DMMDQNGMTPLMWAAYR 152
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 204 IMPSGQAVAL----GLVPLHNACSYGH-FEVTEMLIKAGANVNAMDLW-QFTPLHEAASK 257
++ GQ V + G+ PL A H + T +L+ +VN D + + T LH A
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 258 SRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRE 291
V SLLL GA+ N +SA+D+A R+
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 1069 NVNVADLW-KFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
+VN+ D + K T LH A G ++ LLL+ GA+ +N G + LDL ++
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 25/163 (15%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L PLH A GH + L+K GA+ + +D + +H AA + + L+++G D
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 273 PTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHP 331
+D+ + + ++ H + DP+R+ LT +V VN
Sbjct: 135 -----------VDMMDQNGMTPLMWAAYRTHSV-------DPTRL--LLTFNVSVNLGDK 174
Query: 332 YTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSG 374
Y +T L +L+ + I++ E A V G+S
Sbjct: 175 YHKNTALHWA----VLAGNTTVISLLLEAGANVDAQNIKGESA 213
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
A YG +E L++AG +V D T LH AA +R+++ +S+GA
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 3 RKDVVEYLLASGASI-HARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
R D+V+Y ++ GA + D PLH A GH +V L++ A+P+ D + +
Sbjct: 54 RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI 113
Query: 62 HEAAAKGKTDVC 73
H AA G T +
Sbjct: 114 HLAAQFGHTSIV 125
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAM--DLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
LH A ++ + I GA V+ + DL TPLH A + L + L+ GADP+L
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDL-NSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 276 HNCHSKSAIDVA 287
+ S I +A
Sbjct: 105 IDGEGCSCIHLA 116
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
TPLH A +G +V L+++GADPS + +G + + L +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G +V L+ GA D G +H A FGH +V L+ + + D TPL
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 62 HEAAAKGKT--------DVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGAD 113
AA + + + + + K+ + + G + S L GA+
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI----SLLLEAGAN 202
Query: 114 PFLKNQEGQTPLDL 127
+N +G++ LDL
Sbjct: 203 VDAQNIKGESALDL 216
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD-------- 1115
+K+GA+ ++ D + +H AA G IV L+ G D +++G TPL
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155
Query: 1116 -------LVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
L ++ D N+AL A GN + LL A N++ ++ +G ++
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALD 215
Query: 1168 LHLAAGEKRHLLM 1180
L A +++++ M
Sbjct: 216 L---AKQRKNVWM 225
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
E+L ++ D+ G PL A +FG + VR LLE A+P+ + L A+
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79
Query: 68 GKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR----SCYLAHGADPFLKNQEGQT 123
G TD+ +G+ E N Y + G +H + LA GAD + G T
Sbjct: 80 GYTDI-VGLLL-ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYT 137
Query: 124 PLDLTVAEDVRSLLQ 138
P+DL VA R + Q
Sbjct: 138 PMDLAVALGYRKVQQ 152
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
ES L AS GG +V LL I N D +G TPL +A N V VE LLA GA
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNG--GTPLLYAVHGNHVKCVEALLARGA 126
Query: 460 DVHSKDNATDKWGFTPLHEAAQKG 483
D+ ++ ++ G+TP+ A G
Sbjct: 127 DLTTEADS----GYTPMDLAVALG 146
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 1064 VKHGAN-VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS--KKNRDGATPL------ 1114
++ G N VN D FTPL A+A G+ + VR LL+ GADP K R+ A L
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 1115 -DLV-----REGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPL 1168
D+V R+ D ++ D G + LL A ++ V+ LL A + TP+
Sbjct: 82 TDIVGLLLERDVDINIYD-WNGGTPLLYAVHGNHVKCVEALL-ARGADLTTEADSGYTPM 139
Query: 1169 HLAA 1172
LA
Sbjct: 140 DLAV 143
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGAN-VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPT 274
+ +H + G + + ++ G N VN D FTPL A++ +E LL GADP
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 275 LHNCHSKSAIDVAPT 289
+ +SA+ +A T
Sbjct: 64 ILAKERESALSLAST 78
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDG 603
A + G+ ++ +L++ ++N+ D TPL H +ALL GAD+ + G
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSG 135
Query: 604 KTALDLAV 611
T +DLAV
Sbjct: 136 YTPMDLAV 143
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A + G+ ++ +L++ ++N D TPL A + ++ LL+ GAD T
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSG 135
Query: 281 KSAIDVAPT---RELQQRLSN 298
+ +D+A R++QQ + N
Sbjct: 136 YTPMDLAVALGYRKVQQVIEN 156
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K GA+ NV D +P+H+AA G D +++L++HGAD + + G+ P+ L +REG
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 122
Query: 1123 DVSDLLRGNSAL 1134
V L S L
Sbjct: 123 SVVSFLAPESDL 134
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
A +GD V++ L ++V HP + A+ A+ L+++GA N ++
Sbjct: 17 AAARGDVQEVRRLLHRELV---HPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQD 73
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+P+H AA G LD L L+ GA VN +D G +H R+ + V L
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G V LL GAS + +D G P+H+A G D +++L+E A+ N D+ P
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 61 LHEAAAKGKTDVC 73
+H A +G + V
Sbjct: 113 IHLAIREGHSSVV 125
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
A G P+H+A G + ++L++ GA+VNA+D P+H A + V S L E
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES- 132
Query: 272 DPTLHNCHSKSAIDVAPTRELQQR----LSNEFKGHCLL 306
+ H + A + P +QR L + +GH ++
Sbjct: 133 -----DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 166
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 508 ACKGGDLTKVKKLVNPQTV--NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
A GD+ +V++L++ + V +A + G+ + +G V L+K
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL------------QVMMFGSPAVALELLK 64
Query: 566 HGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
GA+ NV D +P+H+AA K L++HGAD+N ++ G + LA+
Sbjct: 65 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 542 AAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA------AAKALLQHGAD 595
A+G P+H+A G + ++LV+HGA+VN D P+H A + + L +D
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 133
Query: 596 INLKNTDGKTALDLA 610
++ ++ G T L+LA
Sbjct: 134 LHHRDASGLTPLELA 148
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D ++ L+ GA ++A D G P+H A GH+ VV L +++ + RD TPL
Sbjct: 87 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPL 145
Query: 62 HEAAAKGKTDV 72
A +G ++
Sbjct: 146 ELARQRGAQNL 156
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
N +D G ++P+H AA + ++ L+ HGADV NA D G P+H A ++G +
Sbjct: 70 NVQDASG--TSPVHDAARTGFLDTLKVLVEHGADV----NALDSTGSLPIHLAIREGHS 122
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 224 YGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP---------- 273
+G V L+K GA+ N D +P+H+AA L+ +L+ GAD
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 274 ---TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQ 311
+ HS +AP +L R + G LE RQ
Sbjct: 113 IHLAIREGHSSVVSFLAPESDLHHR---DASGLTPLELARQ 150
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA-VTSPYPKRKAIVESLIRKG 731
G+ L A +GD ++ L ++V G T L + +P R+ L+ +G
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR-----LLLRG 60
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A+ + K++ A IH AA G LD L TLL A VN+ D G LH A++ + V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 792 VLLSHNA 798
L+ H A
Sbjct: 121 FLVKHTA 127
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102
H AA +G V + F + SN G T C + +
Sbjct: 108 HLAAKEGHLRV---VEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 516 KVKKLVNPQTVNARDTAGRKSTP-LHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+V KL NP+ AR R + P L G +H+A G + + L++ A+VN+ D
Sbjct: 43 QVMKLGNPEI--ARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIED 100
Query: 575 LWKFTPLHEAAAKA-------LLQHGA-DINLKNTDGKTALDLA 610
PLH AA + L++H A ++ +N G TA DLA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
GAN ++ D F +H+AA G+ D ++ LL+ AD + ++ +G PL L
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHL---------- 109
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPL 1168
AAK+G+L V+ L+ TA N+ R+ +G + L
Sbjct: 110 ----------AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G +H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 274 TLHNCHS-KSAIDVA 287
H H +A D+A
Sbjct: 130 VGHRNHKGDTACDLA 144
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ +A + G L ++ L+ Q VN D G +PLH A GH V E L
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGN-----------LPLHLAAKEGHLRVVEFL 122
Query: 564 VKHGAN 569
VKH A+
Sbjct: 123 VKHTAS 128
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD--LLR 1129
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ LLR
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1130 GN----------SALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
G + + DAA+ G L +Q LL ++N D +G + PLHLAA E
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKE 113
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K GA+ NV D +P+H+AA G D +++L++HGAD + + G+ P+ L +REG
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 120
Query: 1123 DVSDLLRGNSAL 1134
V L S L
Sbjct: 121 SVVSFLAPESDL 132
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
A +GD V++ L ++V HP + A+ A+ L+++GA N ++
Sbjct: 15 AAARGDVQEVRRLLHRELV---HPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQD 71
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+P+H AA G LD L L+ GA VN +D G +H R+ + V L
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G V LL GAS + +D G P+H+A G D +++L+E A+ N D+ P
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 61 LHEAAAKGKTDVC 73
+H A +G + V
Sbjct: 111 IHLAIREGHSSVV 123
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
A G P+H+A G + ++L++ GA+VNA+D P+H A + V S L E
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES- 130
Query: 272 DPTLHNCHSKSAIDVAPTRELQQR----LSNEFKGHCLL 306
+ H + A + P +QR L + +GH ++
Sbjct: 131 -----DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 164
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 508 ACKGGDLTKVKKLVNPQTV--NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
A GD+ +V++L++ + V +A + G+ + +G V L+K
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL------------QVMMFGSPAVALELLK 62
Query: 566 HGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
GA+ NV D +P+H+AA K L++HGAD+N ++ G + LA+
Sbjct: 63 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 542 AAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA------AAKALLQHGAD 595
A+G P+H+A G + ++LV+HGA+VN D P+H A + + L +D
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
Query: 596 INLKNTDGKTALDLA 610
++ ++ G T L+LA
Sbjct: 132 LHHRDASGLTPLELA 146
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D ++ L+ GA ++A D G P+H A GH+ VV L +++ + RD TPL
Sbjct: 85 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPL 143
Query: 62 HEAAAKGKTDV 72
A +G ++
Sbjct: 144 ELARQRGAQNL 154
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
N +D G ++P+H AA + ++ L+ HGADV NA D G P+H A ++G +
Sbjct: 68 NVQDASG--TSPVHDAARTGFLDTLKVLVEHGADV----NALDSTGSLPIHLAIREGHS 120
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 224 YGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP---------- 273
+G V L+K GA+ N D +P+H+AA L+ +L+ GAD
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 274 ---TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQ 311
+ HS +AP +L R + G LE RQ
Sbjct: 111 IHLAIREGHSSVVSFLAPESDLHHR---DASGLTPLELARQ 148
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
E+L ++ D+ G PL A +FG + VR LLE A+P+ + L A+
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79
Query: 68 GKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR-------SCYLAHGADPFLKNQE 120
G TD+ +G+ E N +Y GGT ++ R LA GAD +
Sbjct: 80 GYTDI-VGLLL-ERDVDIN--IYDWNGGTPL-LYAVRGNHVKCVEALLARGADLTTEADS 134
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G TP+DL VA R + Q
Sbjct: 135 GYTPMDLAVALGYRKVQQ 152
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
ES L AS GG +V LL I N D +G TPL +A N V VE LLA GA
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNG--GTPLLYAVRGNHVKCVEALLARGA 126
Query: 460 DVHSKDNATDKWGFTPLHEAAQKG 483
D+ ++ ++ G+TP+ A G
Sbjct: 127 DLTTEADS----GYTPMDLAVALG 146
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 1064 VKHGAN-VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS--KKNRDGATPL------ 1114
++ G N VN D FTPL A+A G+ + VR LL+ GADP K R+ A L
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 1115 -DLV-----REGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPL 1168
D+V R+ D ++ D G + LL A + ++ V+ LL A + TP+
Sbjct: 82 TDIVGLLLERDVDINIYD-WNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTPM 139
Query: 1169 HLAA 1172
LA
Sbjct: 140 DLAV 143
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGAN-VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPT 274
+ +H + G + + ++ G N VN D FTPL A++ +E LL GADP
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 275 LHNCHSKSAIDVAPT 289
+ +SA+ +A T
Sbjct: 64 ILAKERESALSLAST 78
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDG 603
A + G+ ++ +L++ ++N+ D TPL H +ALL GAD+ + G
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
Query: 604 KTALDLAV 611
T +DLAV
Sbjct: 136 YTPMDLAV 143
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 646 GTTDIGWCSCCCKMELM-FM------PRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVN 698
G T + W S ++E + F+ P I + + L A G V L DV
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 699 FKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+ + G TPL AV + K VE+L+ +GA L + P+ LA LG+ V
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVK---CVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A + G+ ++ +L++ ++N D TPL A + ++ LL+ GAD T
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
Query: 281 KSAIDVAPT---RELQQRLSN 298
+ +D+A R++QQ + N
Sbjct: 136 YTPMDLAVALGYRKVQQVIEN 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA-VTSPYPKRKAIVESLIRKG 731
G+ L A +GD ++ L ++V G T L + +P R+ L+ +G
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR-----LLLRG 60
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A+ + K++ A IH AA G LD L TLL A VN+ D G LH A++ + V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 792 VLLSHNA 798
L+ H A
Sbjct: 121 FLVKHTA 127
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102
H AA +G V + F + SN G T C + +
Sbjct: 108 HLAAKEGHLRV---VEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 516 KVKKLVNPQTVNARDTAGRKSTP-LHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+V KL NP+ AR R + P L G +H+A G + + L++ A+VN+ D
Sbjct: 43 QVMKLGNPEI--ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 575 LWKFTPLHEAAAKA-------LLQHGA-DINLKNTDGKTALDLA 610
PLH AA + L++H A ++ +N G TA DLA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
GAN ++ D F +H+AA G D ++ LL+ AD + ++ +G PL L
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL---------- 109
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPL 1168
AAK+G+L V+ L+ TA N+ R+ +G + L
Sbjct: 110 ----------AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G +H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 274 TLHNCHS-KSAIDVA 287
H H +A D+A
Sbjct: 130 VGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ +A + G L ++ L+ Q VN D G +PLH A GH V E L
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGN-----------LPLHLAAKEGHLRVVEFL 122
Query: 564 VKHGAN 569
VKH A+
Sbjct: 123 VKHTAS 128
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD--LLR 1129
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ LLR
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1130 GN----------SALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
G + + DAA+ G L +Q LL ++N D +G + PLHLAA E
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKE 113
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA-VTSPYPKRKAIVESLIRKG 731
G+ L A +GD ++ L ++V G T L + +P R+ L+ +G
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR-----LLLRG 60
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A+ + K++ A IH AA G LD L TLL A VN+ D G LH A++ + V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 792 VLLSHNA 798
L+ H A
Sbjct: 121 FLVKHTA 127
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102
H AA +G V + F + SN G T C + +
Sbjct: 108 HLAAKEGHLRV---VEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 516 KVKKLVNPQTVNARDTAGRKSTP-LHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+V KL NP+ AR R + P L G +H+A G + + L++ A+VN+ D
Sbjct: 43 QVMKLGNPEI--ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 575 LWKFTPLHEAAAKA-------LLQHGA-DINLKNTDGKTALDLA 610
PLH AA + L++H A ++ +N G TA DLA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
GAN ++ D F +H+AA G D ++ LL+ AD + ++ +G PL L
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL---------- 109
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPL 1168
AAK+G+L V+ L+ TA N+ R+ +G + L
Sbjct: 110 ----------AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G +H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 274 TLHNCHS-KSAIDVA 287
H H +A D+A
Sbjct: 130 VGHRNHKGDTACDLA 144
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ +A + G L ++ L+ Q VN D G +PLH A GH V E L
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGN-----------LPLHLAAKEGHLRVVEFL 122
Query: 564 VKHGAN 569
VKH A+
Sbjct: 123 VKHTAS 128
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD--LLR 1129
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ LLR
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1130 GN----------SALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
G + + DAA+ G L +Q LL ++N D +G + PLHLAA E
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKE 113
>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3SE2|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|C Chain C, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|D Chain D, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SMI|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMI|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMJ|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|3SMJ|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|4F1L|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|C Chain C, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|D Chain D, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1Q|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
pdb|4F1Q|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
Length = 193
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 866 SPSFSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRK 925
S Q +++LL D E+ TVA + T S + I +I+++QN
Sbjct: 1 SMDMKQQNFCVVELLPSDPEYNTVASKFNQTC-------------SHFRIEKIERIQNPD 47
Query: 926 LWERYVHRRAEVADENGGQAHERMLFHGS-----PFINAIVQKGFDERHA 970
LW Y ++ + +NG +E+ LFHG+ P +N + GF+ +A
Sbjct: 48 LWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVN---RNGFNRSYA 94
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 204 IMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVC 263
++ G+ AL L ACS G+ ++ +ML+ G +VN D TPL A + ++
Sbjct: 64 LLGKGRESALSL-----ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 264 SLLLSEGADPTLHNCHSKSAIDVAPT---RELQQRLSNEF 300
+LL GADPT+ +++D+A R +QQ + +
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 33/139 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN-FT 59
+G+ VVE+LL +GA G L ACS G+ D+V++LL+ + N D WN T
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGT 104
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PL +A H G C L GADP ++
Sbjct: 105 PL---------------LYAVH-----------GNHVKCV-----KMLLESGADPTIETD 133
Query: 120 EGQTPLDLTVAEDVRSLLQ 138
G +DL VA RS+ Q
Sbjct: 134 SGYNSMDLAVALGYRSVQQ 152
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 60/153 (39%), Gaps = 46/153 (30%)
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
N TD+ GFTPL AA G+ F G D PQ
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVE----------------FLLQNGAD---------PQL 64
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL---- 581
+ GR+S L ACS G+ ++ +ML+ G +VN D TPL
Sbjct: 65 LGK----GRESA----------LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110
Query: 582 ---HEAAAKALLQHGADINLKNTDGKTALDLAV 611
H K LL+ GAD ++ G ++DLAV
Sbjct: 111 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 1070 VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS--KKNRDGATPLDLVREGDQDVSDL 1127
+N D FTPL AAA G+ +V LLQ+GADP K R+ A L +G D+ +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLA-CSKGYTDIVKM 87
Query: 1128 L------------RGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGE 1174
L G + LL A ++ V+ LL + + G NS L +A G
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 1175 K 1175
+
Sbjct: 148 R 148
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 240 VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNE 299
+N D FTPL AA+ ++ V LL GADP L +SA+ +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL------------- 75
Query: 300 FKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPL 338
AC +G VK L V ++ + G TPL
Sbjct: 76 --------ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
A++G + + TR+ +++N D +G TPL +AA + ++AVVE+LL +GAD
Sbjct: 11 AAQGEMLYLATRI--EQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNGAD 61
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
+++GA+ + + + L A +KG DIV++LL G D ++ + +G TPL
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
G +VN D TPL A V++LL+ GADP+ + G +DL
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 404 LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L SKG T + ++L C VN D +G TPL +A N V V+ LL GAD
Sbjct: 75 LACSKG--YTDIVKMLLDCGVDVNEYDWNG--GTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 204 IMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVC 263
++ G+ AL L ACS G+ ++ +ML+ G +VN D TPL A + ++
Sbjct: 62 LLGKGRESALSL-----ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 116
Query: 264 SLLLSEGADPTLHNCHSKSAIDVAPT---RELQQRLSNEF 300
+LL GADPT+ +++D+A R +QQ + +
Sbjct: 117 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 33/139 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN-FT 59
+G+ VVE+LL +GA G L ACS G+ D+V++LL+ + N D WN T
Sbjct: 44 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGT 102
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PL +A H G C L GADP ++
Sbjct: 103 PL---------------LYAVH-----------GNHVKCV-----KMLLESGADPTIETD 131
Query: 120 EGQTPLDLTVAEDVRSLLQ 138
G +DL VA RS+ Q
Sbjct: 132 SGYNSMDLAVALGYRSVQQ 150
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 60/153 (39%), Gaps = 46/153 (30%)
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
N TD+ GFTPL AA G+ F G D PQ
Sbjct: 28 NHTDEEGFTPLMWAAAHGQIAVVE----------------FLLQNGAD---------PQL 62
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL---- 581
+ GR+S L ACS G+ ++ +ML+ G +VN D TPL
Sbjct: 63 LGK----GRESA----------LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 108
Query: 582 ---HEAAAKALLQHGADINLKNTDGKTALDLAV 611
H K LL+ GAD ++ G ++DLAV
Sbjct: 109 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 1070 VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS--KKNRDGATPLDLVREGDQDVSDL 1127
+N D FTPL AAA G+ +V LLQ+GADP K R+ A L +G D+ +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLA-CSKGYTDIVKM 85
Query: 1128 L------------RGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGE 1174
L G + LL A ++ V+ LL + + G NS L +A G
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 1175 K 1175
+
Sbjct: 146 R 146
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 240 VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNE 299
+N D FTPL AA+ ++ V LL GADP L +SA+ +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL------------- 73
Query: 300 FKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPL 338
AC +G VK L V ++ + G TPL
Sbjct: 74 --------ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
A++G + + TR+ +++N D +G TPL +AA + ++AVVE+LL +GAD
Sbjct: 9 AAQGEMLYLATRI--EQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNGAD 59
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
+++GA+ + + + L A +KG DIV++LL G D ++ + +G TPL
Sbjct: 54 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
G +VN D TPL A V++LL+ GADP+ + G +DL
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 139
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 404 LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L SKG T + ++L C VN D +G TPL +A N V V+ LL GAD
Sbjct: 73 LACSKG--YTDIVKMLLDCGVDVNEYDWNG--GTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The
Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The
Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 24/120 (20%)
Query: 1054 MYYGT--LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGA 1111
M +G+ + +K GA+ NV D +P+H+AA G D +++L++HGAD + + GA
Sbjct: 49 MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 108
Query: 1112 TPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
P+ L A ++G+ V L +++ RDA+G TPL LA
Sbjct: 109 LPIHL--------------------AVQEGHTAVVSFLAAESDLHRRDARGL--TPLELA 146
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 35/144 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + LL GAS + +D G P+H+A G D +++L+E A+ N D P
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
+H A +G T V +LA +D ++
Sbjct: 111 IHLAVQEGHTAVV--------------------------------SFLAAESDLHRRDAR 138
Query: 121 GQTPLDLTV---AEDVRSLLQDAM 141
G TPL+L + A+D+ +LQ M
Sbjct: 139 GLTPLELALQRGAQDLVDILQGHM 162
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L A +GD V++ L ++V HP + A+ AI L+++GA
Sbjct: 9 GDRLSGAAARGDVQEVRRLLHRELV---HPDALNRFGKTALQVMMFGSTAIALELLKQGA 65
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
N ++ +P+H AA G LD L L+ GA VN+ D G +H ++ T V
Sbjct: 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 793 L 793
L
Sbjct: 126 L 126
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA------AAKALLQHGADI 596
+G P+H+A G + ++LV+HGA+VNV D P+H A A + L +D+
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL 132
Query: 597 NLKNTDGKTALDLAV 611
+ ++ G T L+LA+
Sbjct: 133 HRRDARGLTPLELAL 147
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 508 ACKGGDLTKVKKLVNPQTV--NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
A GD+ +V++L++ + V +A + G+ + +G + L+K
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL------------QVMMFGSTAIALELLK 62
Query: 566 HGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
GA+ NV D +P+H+AA K L++HGAD+N+ + G + LAV
Sbjct: 63 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P+H+A G + ++L++ GA+VN D P+H A + V S L +E
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES--- 130
Query: 274 TLHNCHSKSAIDVAPTRELQQR----LSNEFKGHCL 305
+ H + A + P QR L + +GH +
Sbjct: 131 ---DLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
N +D G ++P+H AA + ++ L+ HGADV N D G P+H A Q+G T
Sbjct: 68 NVQDTSG--TSPVHDAARTGFLDTLKVLVEHGADV----NVPDGTGALPIHLAVQEGHT 120
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 367 HRDNGQSGGYTALQVAGENSKKLLQE------PPSVVDLE--SQLLEASKGGDMTVVTRL 418
H D G TALQV S + E P+V D S + +A++ G + + L
Sbjct: 34 HPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 93
Query: 419 LSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHE 478
+ H + DG + P+H A AVV +L A +D+H + D G TPL
Sbjct: 94 VE---HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR----DARGLTPLEL 145
Query: 479 AAQKG 483
A Q+G
Sbjct: 146 ALQRG 150
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 224 YGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+G + L+K GA+ N D +P+H+AA L+ +L+ GAD
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 99
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 125/329 (37%), Gaps = 74/329 (22%)
Query: 172 SLPPPAQYSGSGGD--------SVSLPPTSPPQ-PLALET-------VIMPSGQAVALGL 215
SL P Q G+G D ++ +P P+ P+ L T + P + +
Sbjct: 61 SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNII 120
Query: 216 VPLHN------ACSYGHFEVTEMLI--------KAGANVNAMDLWQFTPLHEAASKSRLE 261
P HN S E +E LI AGA+VNA D + TPL A R
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRR 180
Query: 262 VCSLLLSEGADPTLHNCHSKSAI-DVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKF 320
+ + L GADPT++N +SA+ A R+ + + L +GD + +
Sbjct: 181 LVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXV------YXLNSTKLKGDIEELDRN 234
Query: 321 LTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQ 380
+ + H D LL++ ++ +D+ + G TAL
Sbjct: 235 GXTALXIVAHNEGRDQVASAKLLVEK----------GAKVDYDGAARKDSEKYKGRTALH 284
Query: 381 VAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLH 440
A + S P V + L KG + + +D DG+ TP+
Sbjct: 285 YAAQVSNX-----PIV-----KYLVGEKGSNK--------------DKQDEDGK--TPIX 318
Query: 441 FAAGYNRVAVVEYLLAHGADVHSKDNATD 469
AA R+ VV YL+ GA V + D ATD
Sbjct: 319 LAAQEGRIEVVXYLIQQGASVEAVD-ATD 346
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 703 YTGDTPLHCAV-TSPYPKRKAIVESLI-RKGAHLNEKNKELLAPIHLAADLGHLDVLDTL 760
Y G T LH A S P IV+ L+ KG++ ++++++ PI LAA G ++V+ L
Sbjct: 277 YKGRTALHYAAQVSNXP----IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 761 LRLGAKVNLVDVLGQTA 777
++ GA V VD TA
Sbjct: 333 IQQGASVEAVDATDHTA 349
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
T LH+AA + +V+YL+ S + D+ G TP+ AAQ+GR +
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKG---SNKDKQDEDGKTPIXLAAQEGRIE 327
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 204 IMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVC 263
++ G+ AL L ACS G+ ++ +ML+ G +VN D TPL A + ++
Sbjct: 80 LLGKGRESALSL-----ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 134
Query: 264 SLLLSEGADPTLHNCHSKSAIDVAPT---RELQQRLSNEF 300
+LL GADPT+ +++D+A R +QQ + +
Sbjct: 135 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 33/139 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN-FT 59
+G+ VVE+LL +GA G L ACS G+ D+V++LL+ + N D WN T
Sbjct: 62 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGT 120
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PL A G C+ + L GADP ++
Sbjct: 121 PLL-YAVHGNHVKCVKM------------------------------LLESGADPTIETD 149
Query: 120 EGQTPLDLTVAEDVRSLLQ 138
G +DL VA RS+ Q
Sbjct: 150 SGYNSMDLAVALGYRSVQQ 168
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 60/153 (39%), Gaps = 46/153 (30%)
Query: 466 NATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQT 525
N TD+ GFTPL AA G+ F G D PQ
Sbjct: 46 NHTDEEGFTPLMWAAAHGQIAVVE----------------FLLQNGAD---------PQL 80
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL---- 581
+ GR+S L ACS G+ ++ +ML+ G +VN D TPL
Sbjct: 81 LGK----GRESA----------LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 126
Query: 582 ---HEAAAKALLQHGADINLKNTDGKTALDLAV 611
H K LL+ GAD ++ G ++DLAV
Sbjct: 127 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 1070 VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS--KKNRDGATPLDLVREGDQDVSDL 1127
+N D FTPL AAA G+ +V LLQ+GADP K R+ A L +G D+ +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLA-CSKGYTDIVKM 103
Query: 1128 L------------RGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGE 1174
L G + LL A ++ V+ LL + + G NS L +A G
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 1175 K 1175
+
Sbjct: 164 R 164
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
+ +H + G I+ +N D FTPL AA+ ++ V LL GADP L
Sbjct: 21 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 80
Query: 276 HNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGD 335
+SA+ + AC +G VK L V ++ + G
Sbjct: 81 LGKGRESALSL---------------------ACSKGYTDIVKMLLDCGVDVNEYDWNGG 119
Query: 336 TPL 338
TPL
Sbjct: 120 TPL 122
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
A++G + + TR+ +++N D +G TPL +AA + ++AVVE+LL +GAD
Sbjct: 27 AAQGEMLYLATRI--EQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNGAD 77
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
+++GA+ + + + L A +KG DIV++LL G D ++ + +G TPL
Sbjct: 72 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
G +VN D TPL A V++LL+ GADP+ + G +DL
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 157
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 404 LEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L SKG T + ++L C VN D +G TPL +A N V V+ LL GAD
Sbjct: 91 LACSKG--YTDIVKMLLDCGVDVNEYDWNG--GTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 24/120 (20%)
Query: 1054 MYYGT--LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGA 1111
M +G+ + +K GA+ NV D +P+H+AA G D +++L++HGAD + + GA
Sbjct: 43 MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 102
Query: 1112 TPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
P+ L A ++G+ V L +++ RDA+G TPL LA
Sbjct: 103 LPIHL--------------------AVQEGHTAVVSFLAAESDLHRRDARG--LTPLELA 140
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 35/144 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + LL GAS + +D G P+H+A G D +++L+E A+ N D P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
+H A +G T V +LA +D ++
Sbjct: 105 IHLAVQEGHTAVV--------------------------------SFLAAESDLHRRDAR 132
Query: 121 GQTPLDLTV---AEDVRSLLQDAM 141
G TPL+L + A+D+ +LQ M
Sbjct: 133 GLTPLELALQRGAQDLVDILQGHM 156
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
G L A +GD V++ L ++V HP + A+ AI L+++GA
Sbjct: 3 GDRLSGAAARGDVQEVRRLLHRELV---HPDALNRFGKTALQVMMFGSTAIALELLKQGA 59
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
N ++ +P+H AA G LD L L+ GA VN+ D G +H ++ T V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 793 L 793
L
Sbjct: 120 L 120
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA------AAKALLQHGADI 596
+G P+H+A G + ++LV+HGA+VNV D P+H A A + L +D+
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL 126
Query: 597 NLKNTDGKTALDLAV 611
+ ++ G T L+LA+
Sbjct: 127 HRRDARGLTPLELAL 141
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 508 ACKGGDLTKVKKLVNPQTV--NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
A GD+ +V++L++ + V +A + G+ + +G + L+K
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL------------QVMMFGSTAIALELLK 56
Query: 566 HGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
GA+ NV D +P+H+AA K L++HGAD+N+ + G + LAV
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P+H+A G + ++L++ GA+VN D P+H A + V S L +E
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES--- 124
Query: 274 TLHNCHSKSAIDVAPTRELQQR----LSNEFKGHC 304
+ H + A + P QR L + +GH
Sbjct: 125 ---DLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
N +D G ++P+H AA + ++ L+ HGADV N D G P+H A Q+G T
Sbjct: 62 NVQDTSG--TSPVHDAARTGFLDTLKVLVEHGADV----NVPDGTGALPIHLAVQEGHT 114
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 367 HRDNGQSGGYTALQVAGENSKKLLQE------PPSVVDLE--SQLLEASKGGDMTVVTRL 418
H D G TALQV S + E P+V D S + +A++ G + + L
Sbjct: 28 HPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87
Query: 419 LSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHE 478
+ H + DG + P+H A AVV +L A +D+H + D G TPL
Sbjct: 88 VE---HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR----DARGLTPLEL 139
Query: 479 AAQKG 483
A Q+G
Sbjct: 140 ALQRG 144
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 224 YGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+G + L+K GA+ N D +P+H+AA L+ +L+ GAD
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 93
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 74/208 (35%), Gaps = 48/208 (23%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLK 599
PLH AC GH ++L+KHGA VN TPL A LLQHGA + +
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 600 NTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKM 659
+ DLA P A G E + + GG + LGT
Sbjct: 155 S-------DLASPIHEAARRG---HVECVNSLIAYGGNIDHKISHLGTP----------- 193
Query: 660 ELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPK 719
L AC + VKK L S + D+PLH V + +
Sbjct: 194 ----------------LYLACENQQRACVKKLLESG-ADVNQGKGQDSPLHAVVRTASEE 236
Query: 720 RKAIVESLIRKGAHLNEKNKELLAPIHL 747
+ L+ GA KN E P+ L
Sbjct: 237 LACL---LMDFGADTQAKNAEGKRPVEL 261
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH AC GH ++L+K GA VN + TPL A + +LLL GA
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D V LL GAS+ D P+H A GH + V L+ N + + + TPL
Sbjct: 136 GSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYLA-HGAD 113
+ A + + C+ E + NQ G G P+H ++ +C L GAD
Sbjct: 195 Y-LACENQQRACVKKLL-ESGADVNQ-----GKGQDSPLHAVVRTASEELACLLMDFGAD 247
Query: 114 PFLKNQEGQTPLDLTVAE 131
KN EG+ P++L E
Sbjct: 248 TQAKNAEGKRPVELVPPE 265
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR---TQXXXXX 491
H +PLH A ++ V+ LL HGA V + T W TPL A G
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADW-HTPLFNACVSGSWDCVNLLLQH 147
Query: 492 XXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
+ EA + G + V L+ N TPL+ A
Sbjct: 148 GASVQPESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYL---------A 197
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLH-------EAAAKALLQHGADINLKNTDGK 604
C + L++ GA+VN + +PLH E A L+ GAD KN +GK
Sbjct: 198 CENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256
Query: 605 TALDLAVP 612
++L P
Sbjct: 257 RPVELVPP 264
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADINLK 599
P+H A +GH L+ G VN+ +PLHEA K LL+HGA +N
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 600 NTDGKTAL 607
D T L
Sbjct: 122 TADWHTPL 129
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+ G VN+ +PLHEA G V++LL+HGA + D TPL + G
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 138
Query: 1123 DVSDLLRGNSA-----------LLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHL 1170
D +LL + A + +AA++G++ V L+ NI+ + + TPL+L
Sbjct: 139 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH--LGTPLYL 196
Query: 1171 A 1171
A
Sbjct: 197 A 197
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 699 FKHPYTGD-----TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGH 753
+P GD +P+H A + + + +LI +G +N + ++P+H A GH
Sbjct: 48 LSNPLMGDAVSDWSPMHEAAIHGH---QLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104
Query: 754 LDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800
L + LL+ GA+VN V T L V +LL H A
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PL+ AC + L+++GA+VN Q +PLH + E+ LL+ GAD
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Query: 276 HNCHSKSAIDVAPTRELQQRLSNEFKGHCL 305
N K +++ P +L E +G L
Sbjct: 251 KNAEGKRPVELVPPESPLAQLFLEREGASL 280
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNA-MDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL NAC G ++ +L++ GA+V DL +P+HEAA + +E + L++ G +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYGGN 182
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN-TRDNWNFT 59
+G + + L++ G +++ + PLH AC GH V++LL+ A N +W+ T
Sbjct: 69 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-T 127
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSS 83
PL A G D C+ + +S
Sbjct: 128 PLFNACVSGSWD-CVNLLLQHGAS 150
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
L EAC G S VK L TPL A S V L++ GA +
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS---GSWDCVNLLLQHGASV- 151
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN-LVDVLGQTALHRTARDDKTQAVRVLL 794
+ +L +PIH AA GH++ +++L+ G ++ + LG T L+ + + V+ LL
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 210
Query: 795 SHNADTS 801
AD +
Sbjct: 211 ESGADVN 217
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
P+H A +GH LI G VN + +PLHEA L +LL GA
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
P+H A GH E LI G N++ TPL+ A + LL GAD
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1064 VKHGANVNV-ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ 1122
++HGA+V +DL +P+HEAA +G + V L+ +G + K TPL L E Q
Sbjct: 145 LQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
++ GA+VN + +PLH ++ LL+ GAD KN +G P++LV
Sbjct: 210 LESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 743 APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
+P+H AA GH L L+ G VN++ + LH V++LL H A +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 803 VS 804
V+
Sbjct: 121 VT 122
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LLEA+ D V +L + V+ D +G +TPL+ A N + + + L+ GAD++
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVN 522
+++ +D +P A +GRT+ L + K
Sbjct: 67 LQNSISD----SPYLYAGAQGRTEI--------------------------LAYMLKHAT 96
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG-ANVNVADLWKFTPL 581
P +N + G L+P A GH + ++L++ G +++ + + +T L
Sbjct: 97 PD-LNKHNRYG--------GNALIP---AAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
Query: 582 HEAAA------------KALLQHGADINLKNTDGKTALDLA 610
EA K L+++GAD ++K+ G+TA+D A
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYT-GDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA Q D +VK+ L T G+TPL+ AV + I ++LI +GA +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV---HNNDIEIAKALIDRGADI 65
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGA-KVNLVDVLGQTALHRTARDDKTQAVRVL 793
N +N +P A G ++L +L+ +N + G AL A V++L
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 794 L 794
L
Sbjct: 126 L 126
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA-DPSKKNRDGATPLDLVREGDQ 1122
+ GA++N+ + +P A A+G+ +I+ +L+H D +K NR
Sbjct: 59 IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR-------------- 104
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLL 1150
G +AL+ AA+KG++ V+ LL
Sbjct: 105 ------YGGNALIPAAEKGHIDNVKLLL 126
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1091 DIVRLLLQHGADPSKKNRDGATPLDLV-REGDQDVSDLL 1128
DIV+LL+++GAD S K+ G T +D ++G ++S +L
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 228 EVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
+V E+L V+ +D TPL+ A + +E+ L+ GAD L N S S A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 288 PTRELQQRLS-------------NEFKGHCLLEACRQGDPSRVKKFL 321
+ + L+ N + G+ L+ A +G VK L
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 2 GRKDVVEYLLASG-ASIHARDDGGLHPLHNACSFG-----HADVVRLLLEADANPNTRDN 55
G D V+ LL G I ++D G L A + D+V+LL+E A+ + +DN
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176
Query: 56 WNFTPLHEAAAKGKTDV 72
T + A KG T++
Sbjct: 177 SGRTAMDYANQKGYTEI 193
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA-VTSPYPKRKAIVESLIRKG 731
G+ L A +GD ++ L ++V G T L + +P R+ L+ +G
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR-----LLLRG 60
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A+ + K++ A IH AA G LD L TLL A VN+ D G LH A++ + V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 792 VLLSHNA 798
L+ H A
Sbjct: 121 FLVKHTA 127
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102
H AA +G V + F + SN G T C + +
Sbjct: 108 HLAAKEGHLRV---VEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 516 KVKKLVNPQTVNARDTAGRKSTP-LHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+V KL NP+ AR R + P L G +H+A G + + L+++ A+VN+ D
Sbjct: 43 QVMKLGNPEI--ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIED 100
Query: 575 LWKFTPLHEAAAKA-------LLQHGA-DINLKNTDGKTALDLA 610
PLH AA + L++H A ++ +N G TA DLA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA-DPSKKNRDGATPLDLVR-EGD 1121
+++ A+VN+ D PLH AA +G +V L++H A + +N G T DL R G
Sbjct: 90 LENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Query: 1122 QDVSDLLRGNSA 1133
+V L++ N A
Sbjct: 150 NEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
GAN ++ D F +H+AA G D ++ LL++ AD + ++ +G PL L
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHL---------- 109
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPL 1168
AAK+G+L V+ L+ TA N+ R+ +G + L
Sbjct: 110 ----------AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G +H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 274 TLHNCHS-KSAIDVA 287
H H +A D+A
Sbjct: 130 VGHRNHKGDTACDLA 144
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ +A + G L ++ L+ Q VN D G +PLH A GH V E L
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGN-----------LPLHLAAKEGHLRVVEFL 122
Query: 564 VKHGAN 569
VKH A+
Sbjct: 123 VKHTAS 128
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD--LLR 1129
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ LLR
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1130 GN----------SALLDAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGE 1174
G + + DAA+ G L +Q LL ++N D +G + PLHLAA E
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEG--NLPLHLAAKE 113
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA-VTSPYPKRKAIVESLIRKG 731
G+ L A +GD ++ L ++V G T L + +P R+ L+ +G
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR-----LLLRG 60
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A+ + K++ A IH AA G LD L TLL A VN+ D G LH A++ + V
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 792 VLLSHNA 798
L+ H A
Sbjct: 121 FLVKHTA 127
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102
H AA +G V + F + SN G T C + +
Sbjct: 108 HLAAKEGHLRV---VEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 516 KVKKLVNPQTVNARDTAGRKSTP-LHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+V KL NP+ AR R + P L G +H+A G + + L++ A+VN+ D
Sbjct: 43 QVMKLGNPEI--ARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 575 LWKFTPLHEAAAKA-------LLQHGA-DINLKNTDGKTALDLA 610
PLH AA + L++H A ++ +N G TA DLA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD--LLR 1129
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ LLR
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1130 ----------GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
GN+ + DAA+ G L +Q LL ++N D +G + PLHLAA E
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKE 113
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G +H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 274 TLHNCHS-KSAIDVA 287
H H +A D+A
Sbjct: 130 VGHRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ +A + G L ++ L+ Q VN D G +PLH A GH V E L
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGN-----------LPLHLAAKEGHLRVVEFL 122
Query: 564 VKHGAN 569
VKH A+
Sbjct: 123 VKHTAS 128
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
GAN ++ D +H+AA G D ++ LL+ AD + ++ +G PL L
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL---------- 109
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPL 1168
AAK+G+L V+ L+ TA N+ R+ +G + L
Sbjct: 110 ----------AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 505 LFEACKGGDLTKVKKLVNP-QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
L A K L +KL++ VN +D +G+ PL + +G+ E++ L
Sbjct: 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-----------TPLMWSIIFGYSEMSYFL 120
Query: 564 VKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTA 606
++HGANVN +L TPL A+ K LL+ GADI+ ++ G TA
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
R + E LL+ G++++ +D G PL + FG++++ LLE AN N R+ TPL
Sbjct: 80 RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI 139
Query: 63 EAAAKGKTDV 72
A+ G++++
Sbjct: 140 VASKYGRSEI 149
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 1056 YGTLTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGAT 1112
Y ++ ++HGANVN +L TPL A+ G+++IV+ LL+ GAD S ++ G T
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLR 762
++G TPL ++ Y + L+ GA++N++N E P+ +A+ G +++ LL
Sbjct: 99 FSGKTPLMWSIIFGYSEMSYF---LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 763 LGAKVNLVDVLGQTA 777
LGA ++ D+ G TA
Sbjct: 156 LGADISARDLTGLTA 170
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
G+NVN D TPL + G +++ LL+HGA+ + +N +G TPL
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PL + +G+ E++ L++ GANVN +L TPL A+ R E+ LL GAD
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 559 VTEMLVKHGANVNVADLWKFTPL-------HEAAAKALLQHGADINLKNTDGKTALDLA 610
+ E L+ G+NVN D TPL + + LL+HGA++N +N +G+T L +A
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++ +LL GA+++ R+ G PL A +G +++V+ LLE A+ + RD T
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 61 LHEAAAKGKTDV 72
A G+ +V
Sbjct: 171 EASARIFGRQEV 182
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE 45
YGR ++V+ LL GA I ARD GL +A FG +V+++ E
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 398 DLE--SQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLL 455
D+E + L+ A K + + +LLS + VN +D G+ TPL ++ + + +LL
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGK--TPLMWSIIFGYSEMSYFLL 121
Query: 456 AHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
HGA+V+ ++ G TPL A++ GR++
Sbjct: 122 EHGANVNDRNLE----GETPLIVASKYGRSE 148
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 47/159 (29%)
Query: 429 RDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXX 488
+D++G ST L +A NR+ + E LL+ G++V++KD + G TPL + G ++
Sbjct: 64 KDIEG--STALIWAVKNNRLGIAEKLLSKGSNVNTKDFS----GKTPLMWSIIFGYSEMS 117
Query: 489 XXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPL 548
L + VN R+ G PL
Sbjct: 118 YFL----------------------------LEHGANVNDRNLEGE-----------TPL 138
Query: 549 HNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK 587
A YG E+ + L++ GA+++ DL T EA+A+
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTA--EASAR 175
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
VN R+L+G TPL A+ Y R +V+ LL GAD+ ++D
Sbjct: 127 VNDRNLEGE--TPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
G PL A YG E+ + L++ GA+++A DL T A R EV +
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 34/192 (17%)
Query: 593 GADINLKNTDGKTALDLAVPCTRAVLSGDHKKEE----LLEAARMMGGGLHRYTWPLGTT 648
G D+N++ DG T L +A + +G+ ++EE ++ G LH T G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 649 DIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTP 708
L A R K+ L + G TP
Sbjct: 61 --------------------------ALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 94
Query: 709 LHCAVTSPYPKRKAIVESLIR-KGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKV 767
LH AV++ + + + LIR + L+ + + P+ LAA L +L+ L+ A V
Sbjct: 95 LHAAVSA---DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
Query: 768 NLVDVLGQTALH 779
N VD LG++ALH
Sbjct: 152 NAVDDLGKSALH 163
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 6 VVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ + GAS+H + D G LH A + +D + LLEA A+ N +DN TPLH A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 65 AA 66
+
Sbjct: 99 VS 100
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 722 AIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
A++ I +GA L N+ ++ +HLAA D LL A N+ D +G+T LH
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 781 TARDDKTQAVRVLLSHNA 798
D ++L+ + A
Sbjct: 98 AVSADAQGVFQILIRNRA 115
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
T LH AA Y+R + LL AD + +DN G TPLH AA Q
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLH-AAVSADAQGVFQILIRNR 114
Query: 497 XXXXXXR------ELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLH 549
R L A + ++ L+N VNA D G+ + LH
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----------LH 163
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTD 602
A + + + +L+K+GAN ++ + + TPL AA AK LL H A+ ++ +
Sbjct: 164 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 223
Query: 603 GKTALDLA 610
+ D+A
Sbjct: 224 DRLPRDIA 231
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA-- 271
G LH A Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 272 -DPTLHN 277
D +H+
Sbjct: 118 LDARMHD 124
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA---AKALLQ-----HGAD 595
G LH A Y + + L++ A+ N+ D TPLH A A+ + Q D
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 596 INLKNTDGKTALDLA 610
++ + DG T L LA
Sbjct: 118 LDARMHDGTTPLILA 132
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1041 GGLETGTXXXXXNMYYGTLTPHNVKHGANV-NVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
GGLETG + + + GA++ N D T LH AA ++D + LL+
Sbjct: 23 GGLETGNSEEEEDA--PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 80
Query: 1100 GADPSKKNRDGATPL 1114
AD + ++ G TPL
Sbjct: 81 SADANIQDNMGRTPL 95
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D V LL GAS+ D P+H A GH + V L+ N + + + TPL
Sbjct: 80 GSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYLA-HGAD 113
+ A + + C+ E + NQ G G P+H ++ +C L GAD
Sbjct: 139 Y-LACENQQRACVK-KLLESGADVNQ-----GKGQDSPLHAVARTASEELACLLMDFGAD 191
Query: 114 PFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPS 149
KN EG+ P++L E S L + G PS
Sbjct: 192 TQAKNAEGKRPVELVPPE---SPLAQLFLEREGPPS 224
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 75/208 (36%), Gaps = 48/208 (23%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLK 599
PLH AC GH ++L+KHGA VN TPL A LLQHGA + +
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 600 NTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKM 659
+ DLA P A G E + + GG + LGT
Sbjct: 99 S-------DLASPIHEAARRG---HVECVNSLIAYGGNIDHKISHLGTP----------- 137
Query: 660 ELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPK 719
L AC + VKK L S + D+PLH AV +
Sbjct: 138 ----------------LYLACENQQRACVKKLLESG-ADVNQGKGQDSPLH-AVARTASE 179
Query: 720 RKAIVESLIRKGAHLNEKNKELLAPIHL 747
A + L+ GA KN E P+ L
Sbjct: 180 ELACL--LMDFGADTQAKNAEGKRPVEL 205
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH AC GH ++L+K GA VN + TPL A + +LLL GA
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR---TQXXXXX 491
H +PLH A ++ V+ LL HGA V + T W TPL A G
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADW-HTPLFNACVSGSWDCVNLLLQH 91
Query: 492 XXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
+ EA + G + V L+ N TPL+ A
Sbjct: 92 GASVQPESDLASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYL---------A 141
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDGK 604
C + L++ GA+VN + +PLH A A L+ GAD KN +GK
Sbjct: 142 CENQQRACVKKLLESGADVNQGK-GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200
Query: 605 TALDLAVP 612
++L P
Sbjct: 201 RPVELVPP 208
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+ G VN+ +PLHEA G V++LL+HGA + D TPL + G
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 1123 DVSDLLRGNSA-----------LLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTPLHL 1170
D +LL + A + +AA++G++ V L+ NI+ + + TPL+L
Sbjct: 83 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH--LGTPLYL 140
Query: 1171 AAGEKR 1176
A ++
Sbjct: 141 ACENQQ 146
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADINLK 599
P+H A +GH L+ G VN+ +PLHEA K LL+HGA +N
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 600 NTDGKTAL 607
D T L
Sbjct: 66 TADWHTPL 73
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PL+ AC + L+++GA+VN Q +PLH A + E+ LL+ GAD
Sbjct: 137 PLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVARTASEELACLLMDFGADTQAK 195
Query: 277 NCHSKSAIDVAPTRELQQRLSNEFKG-HCLLEACR 310
N K +++ P +L E +G L++ CR
Sbjct: 196 NAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCR 230
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+KHGA VN TPL A G D V LLLQHGA + D A+P+ + R G
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHV 114
Query: 1123 DVSDLLRGNSALLD------------AAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHL 1170
+ + L +D A + V+KLL + + +G++S PLH
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQGKGQDS-PLHA 172
Query: 1171 AAGEKRHLLMC 1181
A L C
Sbjct: 173 VARTASEELAC 183
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
+ +LI +G +N + ++P+H A GHL + LL+ GA+VN V T L
Sbjct: 19 LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 78
Query: 784 DDKTQAVRVLLSHNADT 800
V +LL H A
Sbjct: 79 SGSWDCVNLLLQHGASV 95
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN-TRDNWNFT 59
+G + + L++ G +++ + PLH AC GH V++LL+ A N +W+ T
Sbjct: 13 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-T 71
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSS 83
PL A G D C+ + +S
Sbjct: 72 PLFNACVSGSWD-CVNLLLQHGAS 94
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVN-AMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL NAC G ++ +L++ GA+V DL +P+HEAA + +E + L++ G +
Sbjct: 72 PLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYGGN 126
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
P+H A +GH LI G VN + +PLHEA L +LL GA
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
L EAC G S VK L TPL A S V L++ GA +
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS---GSWDCVNLLLQHGASV- 95
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN-LVDVLGQTALHRTARDDKTQAVRVLL 794
+ +L +PIH AA GH++ +++L+ G ++ + LG T L+ + + V+ LL
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 154
Query: 795 SHNADTS 801
AD +
Sbjct: 155 ESGADVN 161
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
++ GA+VN + +PLH A ++ LL+ GAD KN +G P++LV
Sbjct: 154 LESGADVNQGK-GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV 206
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
P+H A GH E LI G N++ TPL+ A + LL GAD
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 743 APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
+P+H AA GH L L+ G VN++ + LH V++LL H A +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 803 VS 804
V+
Sbjct: 65 VT 66
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
Length = 253
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 6 VVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ + GAS+H + D G LH A ++ +D + LLEA A+ N +DN TPLH A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 65 AA 66
+
Sbjct: 98 VS 99
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 595 DINLKNTDGKTALDLAVPCTRAVLSGDHKKEE----LLEAARMMGGGLHRYTWPLGTTDI 650
D+N++ DG T L +A + +G+ ++EE ++ G LH T G T +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 651 GWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLH 710
+ + + K+ L + G TPLH
Sbjct: 62 HLAAAYSRSDA--------------------------AKRLLEASADANIQDNMGRTPLH 95
Query: 711 CAVTSPYPKRKAIVESLIR-KGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNL 769
AV++ + + + LIR + L+ + + P+ LAA L +L+ L+ A VN
Sbjct: 96 AAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 770 VDVLGQTALH 779
VD LG++ALH
Sbjct: 153 VDDLGKSALH 162
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 436 STPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXX 495
+T LH AA Y+R + LL AD + +DN G TPLH AA Q
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEASADANIQDN----MGRTPLH-AAVSADAQGVFQILIRN 112
Query: 496 XXXXXXXR------ELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPL 548
R L A + ++ L+N VNA D G+ + L
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----------L 161
Query: 549 HNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNT 601
H A + + + +L+K+GAN ++ + + TPL AA AK LL H A+ ++ +
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Query: 602 DGKTALDLA 610
+ D+A
Sbjct: 222 MDRLPRDIA 230
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 722 AIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
A++ I +GA L N+ ++ +HLAA D LL A N+ D +G+T LH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 781 TARDDKTQAVRVLLSHNA 798
D ++L+ + A
Sbjct: 97 AVSADAQGVFQILIRNRA 114
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA-- 271
G LH A +Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 272 -DPTLHN 277
D +H+
Sbjct: 117 LDARMHD 123
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1041 GGLETGTXXXXXNMYYGTLTPHNVKHGANV-NVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
GGLETG + + + GA++ N D T LH AAA ++D + LL+
Sbjct: 22 GGLETGNSEEEEDA--PAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEA 79
Query: 1100 GADPSKKNRDGATPL 1114
AD + ++ G TPL
Sbjct: 80 SADANIQDNMGRTPL 94
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA---AKALLQ-----HGAD 595
G LH A +Y + + L++ A+ N+ D TPLH A A+ + Q D
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 596 INLKNTDGKTALDLA 610
++ + DG T L LA
Sbjct: 117 LDARMHDGTTPLILA 131
>pdb|3BLJ|A Chain A, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15,
Catalytic Fragment
pdb|3BLJ|B Chain B, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15,
Catalytic Fragment
pdb|3GEY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
Length = 221
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 12/72 (16%)
Query: 911 SRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGS-----PFINAIVQKGF 965
S Y I +I+++QN LW+ Y ++ ++ +N + +ER+LFHG+ P++N Q GF
Sbjct: 61 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVN---QHGF 117
Query: 966 DE----RHAIRY 973
+ ++A+ Y
Sbjct: 118 NRSCAGKNAVSY 129
>pdb|4F0E|A Chain A, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|B Chain B, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|C Chain C, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|D Chain D, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
Length = 200
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 12/72 (16%)
Query: 911 SRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGS-----PFINAIVQKGF 965
S Y I +I+++QN LW+ Y ++ ++ +N + +ER+LFHG+ P++N Q GF
Sbjct: 40 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVN---QHGF 96
Query: 966 DE----RHAIRY 973
+ ++A+ Y
Sbjct: 97 NRSCAGKNAVSY 108
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 6 VVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ + GAS+H + D G LH A + +D + LLEA A+ N +DN TPLH A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 65 AA 66
+
Sbjct: 98 VS 99
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 595 DINLKNTDGKTALDLAVPCTRAVLSGDHKKEE----LLEAARMMGGGLHRYTWPLGTTDI 650
D+N++ DG T L +A + +G+ ++EE ++ G LH T G T
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET-- 59
Query: 651 GWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLH 710
L A R K+ L + G TPLH
Sbjct: 60 ------------------------ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 95
Query: 711 CAVTSPYPKRKAIVESLIR-KGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNL 769
AV++ + + + LIR + L+ + + P+ LAA L +L+ L+ A VN
Sbjct: 96 AAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 770 VDVLGQTALH 779
VD LG++ALH
Sbjct: 153 VDDLGKSALH 162
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 722 AIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
A++ I +GA L N+ ++ +HLAA D LL A N+ D +G+T LH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 781 TARDDKTQAVRVLLSHNA 798
D ++L+ + A
Sbjct: 97 AVSADAQGVFQILIRNRA 114
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
T LH AA Y+R + LL AD + +DN G TPLH AA Q
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLH-AAVSADAQGVFQILIRNR 113
Query: 497 XXXXXXR------ELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLH 549
R L A + ++ L+N VNA D G+ + LH
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----------LH 162
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTD 602
A + + + +L+K+GAN ++ + + TPL AA AK LL H A+ ++ +
Sbjct: 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
Query: 603 GKTALDLA 610
+ D+A
Sbjct: 223 DRLPRDIA 230
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA-- 271
G LH A Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 272 -DPTLHN 277
D +H+
Sbjct: 117 LDARMHD 123
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA---AKALLQ-----HGAD 595
G LH A Y + + L++ A+ N+ D TPLH A A+ + Q D
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 596 INLKNTDGKTALDLA 610
++ + DG T L LA
Sbjct: 117 LDARMHDGTTPLILA 131
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1041 GGLETGTXXXXXNMYYGTLTPHNVKHGANV-NVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
GGLETG + + + GA++ N D T LH AA ++D + LL+
Sbjct: 22 GGLETGNSEEEEDA--PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79
Query: 1100 GADPSKKNRDGATPL 1114
AD + ++ G TPL
Sbjct: 80 SADANIQDNMGRTPL 94
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 6 VVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ + GAS+H + D G LH A + +D + LLEA A+ N +DN TPLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 65 A---AKGKTDVCI 74
A+G + I
Sbjct: 66 VSADAQGVFQILI 78
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR-KGAHLNEK 737
A R K+ L + G TPLH AV++ + + + LIR + L+ +
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA---QGVFQILIRNRATDLDAR 88
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
+ P+ LAA L +L+ L+ A VN VD LG++ALH
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
T LH AA Y+R + LL AD + +DN G TPLH AA Q
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLH-AAVSADAQGVFQILIRNR 81
Query: 497 XXXXXXR------ELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLH 549
R L A + ++ L+N VNA D G+ + LH
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-----------LH 130
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTD 602
A + + + +L+K+GAN ++ + + TPL AA AK LL H A+ ++ +
Sbjct: 131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 190
Query: 603 GKTALDLA 610
+ D+A
Sbjct: 191 DRLPRDIA 198
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 722 AIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
A++ I +GA L N+ ++ +HLAA D LL A N+ D +G+T LH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 781 TARDDKTQAVRVLLSHNA 798
D ++L+ + A
Sbjct: 65 AVSADAQGVFQILIRNRA 82
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA-- 271
G LH A Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 272 -DPTLHN 277
D +H+
Sbjct: 85 LDARMHD 91
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA---AKALLQ-----HGAD 595
G LH A Y + + L++ A+ N+ D TPLH A A+ + Q D
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 596 INLKNTDGKTALDLA 610
++ + DG T L LA
Sbjct: 85 LDARMHDGTTPLILA 99
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GANVN AD PLH A G + L L+ GAD ++ +G PL + E +
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 1123 DVSDLLR 1129
D+ LLR
Sbjct: 315 DIVTLLR 321
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
E+LL +GA+++ D G PLH+A GH + L L+ A+ RD+ PL A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 68 GKTDVCIGIYFAE 80
D+ + A+
Sbjct: 312 ANADIVTLLRLAK 324
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
PL A + E L+++GANVN AD PLH A A L+ GAD+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 599 KNTDGKTALDLAVPCTRA 616
++++G+ L +A+ A
Sbjct: 297 RDSEGRDPLTIAMETANA 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PL A + E L++ GANVN D PLH A + L L GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 276 HNCHSKSAIDVA 287
+ + + +A
Sbjct: 297 RDSEGRDPLTIA 308
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
++TPL A N + E+LL +GA+V+ D+A G PLH A G T
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----GRGPLHHATILGHT 281
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 209 QAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
QA + G PLH+A GH + + +K GA++ A D PL A + ++ +LL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 725 ESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARD 784
E L++ GA++N+ + P+H A LGH + L+ GA + ARD
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-------------ARD 298
Query: 785 DKTQAVRVLLSHNADTSIVSLL 806
+ + + A+ IV+LL
Sbjct: 299 SEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat
Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat
Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GANVN AD PLH A G + L L+ GAD ++ +G PL + E +
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 1123 DVSDLLR 1129
D+ LLR
Sbjct: 315 DIVTLLR 321
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
E+LL +GA+++ D G PLH+A GH + L L+ A+ RD+ PL A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 68 GKTDVCIGIYFAE 80
D+ + A+
Sbjct: 312 ANADIVTLLRLAK 324
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
PL A + E L+++GANVN AD PLH A A L+ GAD+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 599 KNTDGKTALDLAVPCTRA 616
++++G+ L +A+ A
Sbjct: 297 RDSEGRDPLTIAMETANA 314
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PL A + E L++ GANVN D PLH A + L L GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 276 HNCHSKSAIDVA 287
+ + + +A
Sbjct: 297 RDSEGRDPLTIA 308
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
++TPL A N + E+LL +GA+V+ D+A G PLH A G T
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----GRGPLHHATILGHT 281
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 209 QAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
QA + G PLH+A GH + + +K GA++ A D PL A + ++ +LL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 725 ESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARD 784
E L++ GA++N+ + P+H A LGH + L+ GA + ARD
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-------------ARD 298
Query: 785 DKTQAVRVLLSHNADTSIVSLL 806
+ + + A+ IV+LL
Sbjct: 299 SEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With
Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With
Integrin Beta1 Peptide
Length = 390
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GANVN AD PLH A G + L L+ GAD ++ +G PL + E +
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 1123 DVSDLLR 1129
D+ LLR
Sbjct: 315 DIVTLLR 321
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
E+LL +GA+++ D G PLH+A GH + L L+ A+ RD+ PL A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 68 GKTDVCIGIYFAE 80
D+ + A+
Sbjct: 312 ANADIVTLLRLAK 324
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
PL A + E L+++GANVN AD PLH A A L+ GAD+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 599 KNTDGKTALDLAVPCTRA 616
++++G+ L +A+ A
Sbjct: 297 RDSEGRDPLTIAMETANA 314
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PL A + E L++ GANVN D PLH A + L L GAD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 276 HNCHSKSAIDVA 287
+ + + +A
Sbjct: 297 RDSEGRDPLTIA 308
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
++TPL A N + E+LL +GA+V+ D+A G PLH A G T
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----GRGPLHHATILGHT 281
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 209 QAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
QA + G PLH+A GH + + +K GA++ A D PL A + ++ +LL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 725 ESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARD 784
E L++ GA++N+ + P+H A LGH + L+ GA + ARD
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-------------ARD 298
Query: 785 DKTQAVRVLLSHNADTSIVSLL 806
+ + + A+ IV+LL
Sbjct: 299 SEGRDPLTIAMETANADIVTLL 320
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLL---EADANPNTRDNWN 57
+GR DVV+ LLA A ++ +DD G L AC GH ++ LLL D + RD
Sbjct: 193 HGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGS- 251
Query: 58 FTPLHEAAAKGKTDVCIGIY 77
T L A G++++ +Y
Sbjct: 252 -TALMVALDAGQSEIASMLY 270
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 49/197 (24%)
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
++VN D +G +T LH++ + VV+ LL G K + ++ G++P+ A
Sbjct: 102 YVVNIADSNG--NTALHYSVSHANFPVVQQLLDSGV---CKVDKQNRAGYSPIMLTALAT 156
Query: 484 -RTQXXXXXXXXXXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFA 542
+TQ D+ V +L +NA+ +
Sbjct: 157 LKTQ-------------------------DDIETVLQLFRLGNINAKASQ---------- 181
Query: 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL--------HEAAAKALLQHGA 594
AG L A S+G +V + L+ A+VNV D T L E A L
Sbjct: 182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 595 DINLKNTDGKTALDLAV 611
DI+L + DG TAL +A+
Sbjct: 242 DISLTDRDGSTALMVAL 258
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 1070 VNVADLWKFTPLHEAAAKGKADIVRLLLQHGA-DPSKKNRDGATP--------------- 1113
VN+AD T LH + + +V+ LL G K+NR G +P
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 1114 ---LDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
L L R G+ + G +AL+ A G + V+ LL + ++N +D G ST L
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG--STALM 221
Query: 1170 LA 1171
A
Sbjct: 222 CA 223
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 696 VVNFKHPYTGDTPLHCAVT-SPYPKRKAIVESLIRKGA-HLNEKNKELLAPIHLAA--DL 751
VVN G+T LH +V+ + +P +V+ L+ G ++++N+ +PI L A L
Sbjct: 103 VVNIADS-NGNTALHYSVSHANFP----VVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157
Query: 752 GHLDVLDTLL---RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
D ++T+L RLG GQTAL + V+ LL+ AD ++
Sbjct: 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV 211
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 506 FEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
+ A + D + +L+ + V+A D GR T L F AGL G + +L +
Sbjct: 50 WTAARKADEQALSQLLEDRDVDAVDENGR--TALLFVAGL---------GSDKCVRLLAE 98
Query: 566 HGANVNVADL-WKFTPLHEAAA-------KALLQHGADINLKNTDGKTALDLA 610
GA+++ D+ T LH AA +AL++ GADI +++ G TAL+LA
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 376 YTALQVAGENSKKLLQEPPSVVDLESQ-----LLEASKGGDMTVVTRLLSSCPHIVNCRD 430
+TA + A E + L E V ++ L A G D V RLL+ ++ RD
Sbjct: 50 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCV--RLLAEAGADLDHRD 107
Query: 431 LDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
+ G T LH AAGY R VVE L+ GAD+ +D
Sbjct: 108 MRG-GLTALHMAAGYVRPEVVEALVELGADIEVED 141
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1067 GANVNVADL-WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
GA+++ D+ T LH AA + ++V L++ GAD ++ G T L+L RE
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 2 GRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G V L +GA + RD GGL LH A + +VV L+E A+ D T
Sbjct: 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147
Query: 61 LHEAAAKGKT 70
L A KT
Sbjct: 148 LELAREILKT 157
>pdb|2EAN|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of Human
Kiaa0902 Protein (Connector Enhancer Of Kinase
Suppressor Of Ras 2)
Length = 83
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 817 LKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC---SSPS 868
L+ ++ FERE+I+ D L + H++L+ +GVS G++ +L+ ++ LC S PS
Sbjct: 27 LQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGPS 81
>pdb|3BS5|B Chain B, Crystal Structure Of Hcnk2-SamDHYP-Sam Complex
Length = 80
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 817 LKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865
L+ ++ FERE+I+ D L + H++L+ +GVS G++ +L+ ++ LC+
Sbjct: 23 LQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCA 71
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
L AAA+G+ + VR LL+ GADP+ NR G P+ ++ G V++LL + A + A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADP 75
Query: 1141 GNLGR 1145
L R
Sbjct: 76 ATLTR 80
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 554 YGHYEVTEMLVKHGANVNVADLWKFT-PLHEAAAKALL-------QHGADINLKNTDGKT 605
G +V E+L+ HGA N AD T P+H+AA + L + GA +++ + G+
Sbjct: 54 MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 606 ALDLA 610
+DLA
Sbjct: 114 PVDLA 118
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGL-HPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G V E LL GA + D L P+H+A G D + +L A A + D W
Sbjct: 54 MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 60 PLHEAAAKGKTDVC 73
P+ A +G D+
Sbjct: 114 PVDLAEEQGHRDIA 127
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A + G E L++AGA+ NA++ + P+ S +V LLL GA+P N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEP---N 71
Query: 278 C 278
C
Sbjct: 72 C 72
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1066 HGANVNVADLWKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQD 1123
HGA N AD T P+H+AA +G D + +L + GA + G P+DL E G +D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD 125
Query: 1124 VSDLL 1128
++ L
Sbjct: 126 IARYL 130
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 723 IVESLIRKGAHLNEKNKELLA-PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ 775
+ E L+ GA N + L P+H AA G LD L L R GA++++ D G+
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 506 FEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK 565
+ A + D + +L+ + V+A D GR T L F AGL G + +L +
Sbjct: 49 WTAARKADEQALSQLLEDRDVDAVDENGR--TALLFVAGL---------GSDKCVRLLAE 97
Query: 566 HGANVNVADL-WKFTPLHEAAA-------KALLQHGADINLKNTDGKTALDLA 610
GA+++ D+ T LH AA +AL++ GADI +++ G TAL+LA
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 376 YTALQVAGENSKKLLQEPPSVVDLESQ-----LLEASKGGDMTVVTRLLSSCPHIVNCRD 430
+TA + A E + L E V ++ L A G D V RLL+ ++ RD
Sbjct: 49 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCV--RLLAEAGADLDHRD 106
Query: 431 LDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
+ G T LH AAGY R VVE L+ GAD+ +D G T L A + +T
Sbjct: 107 MRG-GLTALHMAAGYVRPEVVEALVELGADIEVEDER----GLTALELAREILKT 156
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
T LH AA + ++V L++ GAD ++ G T L+L RE
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 2 GRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G V L +GA + RD GGL LH A + +VV L+E A+ D T
Sbjct: 87 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146
Query: 61 LHEAAAKGKT 70
L A KT
Sbjct: 147 LELAREILKT 156
>pdb|2PQF|A Chain A, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
pdb|2PQF|B Chain B, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
pdb|2PQF|C Chain C, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
pdb|2PQF|D Chain D, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
pdb|2PQF|E Chain E, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
pdb|2PQF|F Chain F, Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzoic Acid
Length = 198
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 913 YNIIRIQKVQNRKLWERYVHRRAEVADENGGQA-HERMLFHGSP--FINAIVQKGFDER 968
Y + +I++VQN LWE Y ++ + +NGG+A ER LFHG+ F++AI Q+ FD R
Sbjct: 38 YFVQKIERVQNLALWEVYQWQKGQXQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWR 96
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 23/139 (16%)
Query: 505 LFEACKGGDLTKVKK-LVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
L EA K G+L+ +++ L N VN D AG ST L++A C GH ++ E L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAG--STALYWA---------CHGGHKDIVEXL 125
Query: 564 VKH-GANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDGKTALDLAVPCTR 615
+N + T LH AA K LL GA +L+N + K A D A T
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA---TN 182
Query: 616 AVLSGDHKKEELLEAARMM 634
A + KK++ +A R +
Sbjct: 183 AACASLLKKKQGTDAVRTL 201
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLI-KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G L+ AC GH ++ E L + +N + T LH AA K ++ LLL++GA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 273 PTLHNCHSKSAIDVA 287
L N K A D A
Sbjct: 166 TDLRNIEKKLAFDXA 180
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRK-GAHL 734
L EA ++G+ S +++ L + V G T L+ A + K IVE L + L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC---HGGHKDIVEXLFTQPNIEL 133
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
N++NK +H AA G+ D++ LL GA+ +L ++ + A
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD 1115
T LH AA KG ADIV+LLL GA +N + D
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 17 IHARDDGGLHPLHNACSFGHADVVR-LLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
++ D G L+ AC GH D+V L + + N ++ T LH AA KG D+
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 GRKDVVEYLLAS-GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD 54
G KD+VE L ++ ++ G LH A G+AD+V+LLL A + R+
Sbjct: 117 GHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 745 IHLAADLGHLDVLDTLL-RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI- 802
++ A GH D+++ L + ++N + LG TALH A V++LL+ A T +
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 803 -VSLLVIFSCSTNLGLKHLLE 822
+ + F +TN LL+
Sbjct: 170 NIEKKLAFDXATNAACASLLK 190
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 6 VVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
V+ + GAS+H + D G LH A + +D + LLEA A+ +DN TPLH A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 65 AA 66
+
Sbjct: 63 VS 64
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR-KGAHLNEK 737
A R K+ L + G TPLH AV++ + + + L+R + L+ +
Sbjct: 29 AARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADA---QGVFQILLRNRATDLDAR 85
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
+ P+ LAA L +L+ L+ A VN VD LG++ALH
Sbjct: 86 MHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 413 TVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWG 472
+V++ + + N D G T LH AA Y+R + LL AD +DN G
Sbjct: 2 SVISDFIYQGASLHNQTDRTG--ETALHLAARYSRSDAAKRLLEASADAXIQDN----MG 55
Query: 473 FTPLHEAAQKGRTQXXXXXXXXXXXXXXXXRE------LFEACKGGDLTKVKKLVNPQT- 525
TPLH AA Q R L A + ++ L+N
Sbjct: 56 RTPLH-AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD 114
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
VNA D G+ + LH A + + + +L+K+GAN ++ + + TPL AA
Sbjct: 115 VNAVDDLGKSA-----------LHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 163
Query: 586 -------AKALLQHGADINLKNTDGKTALDLA 610
AK LL H A+ ++ + + D+A
Sbjct: 164 REGSYETAKVLLDHFANRDITDHMDRLPRDIA 195
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 722 AIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
+++ I +GA L N+ ++ +HLAA D LL A + D +G+T LH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 781 TARDDKTQAVRVLLSHNA 798
D ++LL + A
Sbjct: 62 AVSADAQGVFQILLRNRA 79
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA-- 271
G LH A Y + + L++A A+ D TPLH A S V +LL A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 272 -DPTLHN 277
D +H+
Sbjct: 82 LDARMHD 88
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 5 DVVEYLLASGASIHARDDG-------------GLHPLHNACSFGHADVVRLLLEADANPN 51
++V LLA GAS+ AR G G HPL A G ++VRLL+E A+
Sbjct: 89 NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148
Query: 52 TRDNWNFTPLH 62
+D+ T LH
Sbjct: 149 AQDSLGNTVLH 159
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 1080 PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
PL AA G +IVRLL++HGAD ++ G T L ++
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 682 QGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL 741
+ P V + +TS++ Y G T LH AV + + +V +L+ +GA ++ +
Sbjct: 58 EAAPELVFEPMTSEL------YEGQTALHIAVIN---QNVNLVRALLARGASVSARATGS 108
Query: 742 LA-------------PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH-RTARDDKT 787
+ P+ AA +G +++ L+ GA + D LG T LH + +KT
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168
Query: 788 ---QAVRVLLSHNADTSIVSLLVI 808
Q +LLS++ + SL ++
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELV 192
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The
Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex
Length = 156
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSA------- 1133
L AAA+G+ + VR LL+ GA+P+ N G P+ ++ G V++LL + A
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 1134 ------LLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
+ DAA++G L + L A ++ RDA GR P+ LA
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR--LPVDLA 118
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 1066 HGANVNVADLWKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQD 1123
HGA N AD T P+H+AA +G D + +L + GA ++ G P+DL E G +D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 1124 VSDLLRG--------NSALLDAAK 1139
V+ LR N A +DAA+
Sbjct: 126 VARYLRAAAGGTRGSNHARIDAAE 149
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 555 GHYEVTEMLVKHGANVNVADLWKFT-PLHEAAAKALL-------QHGADINLKNTDGKTA 606
G V E+L+ HGA N AD T P+H+AA + L + GA +++++ G+
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 607 LDLA 610
+DLA
Sbjct: 115 VDLA 118
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 2 GRKDVVEYLLASGASIHARDDGGL-HPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G V E LL GA + D L P+H+A G D + +L A A + RD W P
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGT 96
+ A G DV +Y+ GGT
Sbjct: 115 VDLAEELGHRDVA-------------RYLRAAAGGT 137
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 723 IVESLIRKGAHLNEKNKELLA-PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ 775
+ E L+ GA N + L P+H AA G LD L L R GA++++ D G+
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
L A + G E L++AGAN NA + + P+ S V LLL GA+P N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEP---N 71
Query: 278 C 278
C
Sbjct: 72 C 72
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
L A + G + VR LLEA ANPN +++ P+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ 50
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD-LWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A + E+ +L AGA++N + TPLH A V LLL GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 273 PT 274
PT
Sbjct: 218 PT 219
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL-LAPIHLAADLGHLDVLDTLL 761
Y G TPLH AV K +V L GA LN+ P+HLA + VL+ LL
Sbjct: 156 YDGHTPLHVAVIH---KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ GA G+T L R+L +H A
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
TPLH A A ++ LLL+ GADP+ + G TPL
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
GDT LH AV + + +L+ +N +HLAA LG ++ L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLL----SHNADTSIVSLLVIFSCSTN 814
A V + + G TALH R VLL SH D S L C+ +
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD-LWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A + E+ +L AGA++N + TPLH A V LLL GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 273 PT 274
PT
Sbjct: 218 PT 219
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL-LAPIHLAADLGHLDVLDTLL 761
Y G TPLH AV K +V L GA LN+ P+HLA + VL+ LL
Sbjct: 156 YDGHTPLHVAVIH---KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ GA G+T L R+L +H A
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
TPLH A A ++ LLL+ GADP+ + G TPL
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
GDT LH AV + + +L+ +N +HLAA LG ++ L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLL----SHNADTSIVSLLVIFSCSTN 814
A V + + G TALH R VLL SH D S L C+ +
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 68/189 (35%), Gaps = 47/189 (24%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXXXX 496
TPLH A N+ + E LL G D + D G TPLH A ++G
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELR----DFRGNTPLHLACEQG------------- 86
Query: 497 XXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
L ++C L + K N G LH A +G+
Sbjct: 87 -CLASVGVLTQSCTTPHLHSILKATN-------------------YNGHTCLHLASIHGY 126
Query: 557 YEVTEMLVKHGANVNVADLWK-FTPLHEAA-------AKALLQHGADINLKNTDGKTALD 608
+ E+LV GA+VN + T LH A LL+ GAD+N G +
Sbjct: 127 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 186
Query: 609 LAV--PCTR 615
L P TR
Sbjct: 187 LTWGRPSTR 195
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIR--KG--AHLNEKNKELLAPIHLAADLGHLDVLDTL 760
GD+ LH A+ + KA+ +IR KG A LN +N P+HLA ++ + L
Sbjct: 5 GDSFLHLAIIH---EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 761 LRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
L G L D G T LH +V VL
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQ-FTPLHEAASKSRLEVCSLLLSEGADPTLH 276
LH A +G+ + E+L+ GA+VNA + T LH A ++ SLLL GAD
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Query: 277 NCHSKSAIDVA---PTRELQQRL 296
S + P+ +QQ+L
Sbjct: 178 TYQGYSPYQLTWGRPSTRIQQQL 200
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
A +N + + TPLH A + +I LL G DP ++ G TPL L E
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 84
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 703 YTGDTPLHCAVTS-PYPKRKAIVESLIRKGAH--LNEKNKELLAPIHLAADLGHLDVLDT 759
+ G+TPLH A + +S H L N +HLA+ G+L +++
Sbjct: 73 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 132
Query: 760 LLRLGAKVNLVDVL-GQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
L+ LGA VN + G+TALH V +LL AD + V+
Sbjct: 133 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 178
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PLH A E+ E L+ AG + D TPLH A + L +L P LH
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 277 N 277
+
Sbjct: 105 S 105
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+G +VE L++ GA ++A++ G LH A + D+V LLL+ A+ N ++
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Query: 60 PLHEAAAKGKTDV 72
P + T +
Sbjct: 184 PYQLTWGRPSTRI 196
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKG 68
PLH A ++ LL A +P RD TPLH A +G
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 68/191 (35%), Gaps = 47/191 (24%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQXXXXXXXX 494
TPLH A N+ + E LL G D + D G TPLH A ++G
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELR----DFRGNTPLHLACEQG----------- 89
Query: 495 XXXXXXXXRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSY 554
L ++C L + K N G LH A +
Sbjct: 90 ---CLASVGVLTQSCTTPHLHSILKATN-------------------YNGHTCLHLASIH 127
Query: 555 GHYEVTEMLVKHGANVNVADLWK-FTPLHEAA-------AKALLQHGADINLKNTDGKTA 606
G+ + E+LV GA+VN + T LH A LL+ GAD+N G +
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 607 LDLAV--PCTR 615
L P TR
Sbjct: 188 YQLTWGRPSTR 198
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIR--KG--AHLNEKNKELLAPIHLAADLGHLDVLDTL 760
GD+ LH A+ + KA+ +IR KG A LN +N P+HLA ++ + L
Sbjct: 8 GDSFLHLAIIH---EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 761 LRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
L G L D G T LH +V VL
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQ-FTPLHEAASKSRLEVCSLLLSEGADPTLH 276
LH A +G+ + E+L+ GA+VNA + T LH A ++ SLLL GAD
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 277 NCHSKSAIDVA---PTRELQQRL 296
S + P+ +QQ+L
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQL 203
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE 1119
A +N + + TPLH A + +I LL G DP ++ G TPL L E
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 703 YTGDTPLHCAVTS-PYPKRKAIVESLIRKGAH--LNEKNKELLAPIHLAADLGHLDVLDT 759
+ G+TPLH A + +S H L N +HLA+ G+L +++
Sbjct: 76 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135
Query: 760 LLRLGAKVNLVDVL-GQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
L+ LGA VN + G+TALH V +LL AD + V+
Sbjct: 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
PLH A E+ E L+ AG + D TPLH A + L +L P L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 276 HN 277
H+
Sbjct: 107 HS 108
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+G +VE L++ GA ++A++ G LH A + D+V LLL+ A+ N ++
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 60 P 60
P
Sbjct: 187 P 187
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKG 68
PLH A ++ LL A +P RD TPLH A +G
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
>pdb|2Y0I|S Chain S, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
Length = 21
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 447 RVAVVEYLLAHGADVHSKDN 466
RV+VVEYLL HGADVH+KD
Sbjct: 1 RVSVVEYLLQHGADVHAKDK 20
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 3 RKDVVEYLLASGASIHARDDG 23
R VVEYLL GA +HA+D G
Sbjct: 1 RVSVVEYLLQHGADVHAKDKG 21
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 1066 HGANVNVADLWKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQD 1123
HGA N AD T P+H+AA +G D + +L + GA ++ G P+DL E G +D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 1124 VSDLLRG--------NSALLDAAK 1139
V+ LR N A +DAA+
Sbjct: 126 VARYLRAAAGGTRGSNHARIDAAE 149
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQTV-NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
L A G + +V+ L+ + NA ++ GR+ + G V E+L
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMM------------MGSARVAELL 63
Query: 564 VKHGANVNVADLWKFT-PLHEAAAKALL-------QHGADINLKNTDGKTALDLA 610
+ HGA N AD T P+H+AA + L + GA +++++ G+ +DLA
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGL-HPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G V E LL GA + D L P+H+A G D + +L A A + RD W P
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYV 89
+ A G DV + A ++ + +
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGSNHA 143
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 723 IVESLIRKGAHLNEKNKELLA-PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ 775
+ E L+ GA N + L P+H AA G LD L L R GA++++ D G+
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%)
Query: 709 LHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
LH AV +V+ +I+ G HL+ K + +H AA D L LL+ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 769 LVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFS 810
V+ G+TAL + + +L A T L V +S
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 295
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%)
Query: 709 LHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
LH AV +V+ +I+ G HL+ K + +H AA D L LL+ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 769 LVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFS 810
V+ G+TAL + + +L A T L V +S
Sbjct: 235 TVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 276
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+H AA KG+ D VR L++ G P+ +NR G T L L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL 59
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN-FTP 60
G+ D V L+ +G S ++ G LH AC FG D + L W+ P
Sbjct: 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG---EVHSLWHGQKP 87
Query: 61 LHEAAAKGKTDVCIGI 76
+H A KTD+ + +
Sbjct: 88 IHLAVXANKTDLVVAL 103
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTD 71
DD +H A G D VR L+E +P ++ + T LH A G D
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
>pdb|2QZC|A Chain A, Crystal Structure Of A Putative Tena-like Thiaminase
(tena-1, Sso2206) From Sulfolobus Solfataricus P2 At 1.50
A Resolution
pdb|2QZC|B Chain B, Crystal Structure Of A Putative Tena-like Thiaminase
(tena-1, Sso2206) From Sulfolobus Solfataricus P2 At 1.50
A Resolution
Length = 214
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 1106 KNRDGATPLDLVR----EGDQDVSDLLRGNSALLDAAKKGNLGRVQKLL 1150
K RDG+ PLD+ R + + V D LR ALL A+ KG + +V K+L
Sbjct: 30 KXRDGSLPLDIFRYYLIQDGKYVEDXLR---ALLIASSKGPIDKVTKIL 75
>pdb|3N9U|C Chain C, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
pdb|3N9U|I Chain I, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
Length = 156
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 354 ITVAEEMQATVREHRDNGQSGGYTALQVAGENS-KKLLQEPPSVV 397
I V + ++ E+R NGQS GY + VA ENS KLL+ P V
Sbjct: 79 IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV 123
>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor
Tyrosine Kinase Ephb2, Nmr, 10 Structures
Length = 75
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIE 861
T DI+++M ED+ +VGV+ G++ K+L I+
Sbjct: 36 TFDIVSQMTVEDILRVGVTLAGHQKKILNSIQ 67
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
T L+ AA G IV LL +GADP N+ G P+D
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
>pdb|2KG5|A Chain A, Nmr Solution Structure Of Arap3-Sam
Length = 100
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 837 MNHEDLKQVGVSAYGYRHKLLK 858
+ HE+LKQ+G+SA G+R ++L+
Sbjct: 59 LGHEELKQLGISATGHRKRILR 80
>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
Length = 157
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 831 LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+D + ++ EDL+++G++ G++ KL+ + KL
Sbjct: 114 IDFITDITWEDLQEIGITKLGHQKKLMLAVRKL 146
>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
Length = 149
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 831 LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+D + ++ EDL+++G++ G++ KL+ + KL
Sbjct: 106 IDFITDITWEDLQEIGITKLGHQKKLMLAVRKL 138
>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
Length = 481
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1096 LLQHGADPSKKNRDGATPLDL----VREGDQD---VSDLLRGNSALLDAAKKGNLGRVQK 1148
L+Q G P K N+DG+ + VRE + + + +RG+ AL+ A K G V
Sbjct: 125 LVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTF 184
Query: 1149 LLTADNIN---CRDAQ 1161
+A N N C+ A+
Sbjct: 185 RKSARNFNLPXCKAAE 200
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 687 RVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH 746
++K FL+S FK G + + A+ +V +L+ GA N E P+H
Sbjct: 14 QLKSFLSSKDT-FKADVHGHSASYYAIAD---NNVRLVCTLLNAGALKNLLENEF--PLH 67
Query: 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
AA L ++ LL G + D G TAL+ Q V++ + N
Sbjct: 68 QAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|3BQ7|A Chain A, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|B Chain B, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|C Chain C, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|D Chain D, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|E Chain E, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|F Chain F, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
Length = 81
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+L L ++F R I L + DLK +GV+ G+ ++L GI++L
Sbjct: 21 HLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKEL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,988,243
Number of Sequences: 62578
Number of extensions: 1637726
Number of successful extensions: 6499
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3661
Number of HSP's gapped (non-prelim): 1816
length of query: 1236
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1126
effective length of database: 8,089,757
effective search space: 9109066382
effective search space used: 9109066382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)