Query psy8898
Match_columns 1236
No_of_seqs 474 out of 4120
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 22:17:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 8.4E-58 2.9E-62 545.8 42.2 399 12-797 2-400 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 7.9E-55 2.7E-59 520.1 47.5 290 213-798 13-302 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-41 4.8E-46 390.0 33.7 304 213-803 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 6.9E-41 2.4E-45 384.2 31.5 305 22-770 23-330 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 7.8E-38 2.7E-42 361.8 32.4 308 213-799 23-334 (351)
6 3utm_A Tankyrase-1; tankyrase, 100.0 5.7E-39 1.9E-43 371.4 21.7 332 9-611 9-347 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-37 5.3E-42 347.7 31.9 276 213-804 4-283 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 4.5E-36 1.5E-40 335.7 27.8 263 1-465 15-283 (285)
9 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-35 4.6E-40 330.2 24.0 91 705-801 190-281 (285)
10 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-35 3.8E-40 344.7 20.0 302 399-800 37-372 (373)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-35 3.7E-40 344.8 19.2 287 2-496 77-370 (373)
12 2xai_A ASB-9, ankyrin repeat a 100.0 4.7E-35 1.6E-39 321.7 20.9 68 213-280 2-69 (261)
13 3ljn_A Hypothetical protein; a 100.0 5.9E-36 2E-40 347.2 11.4 180 14-272 10-198 (364)
14 2xai_A ASB-9, ankyrin repeat a 100.0 6.2E-35 2.1E-39 320.8 16.3 251 23-490 2-256 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-34 7.7E-39 314.8 18.2 172 15-276 1-186 (253)
16 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-33 5.2E-38 313.6 20.5 183 1-275 25-218 (285)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 2.1E-33 7.2E-38 307.2 20.9 120 677-799 129-248 (253)
18 3ljn_A Hypothetical protein; a 100.0 1.6E-34 5.5E-39 335.1 12.6 240 435-800 20-270 (364)
19 1oy3_D Transcription factor in 100.0 1.4E-33 4.8E-38 314.9 16.8 263 17-483 2-269 (282)
20 3b7b_A Euchromatic histone-lys 100.0 1.4E-32 4.7E-37 297.9 23.3 170 15-274 2-171 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 5.7E-33 1.9E-37 301.9 20.3 172 17-275 2-178 (241)
22 3aji_A 26S proteasome non-ATPa 100.0 1.1E-32 3.8E-37 297.4 21.5 225 399-799 6-230 (231)
23 1k1a_A B-cell lymphoma 3-encod 100.0 8.9E-33 3E-37 300.4 19.8 124 673-799 117-241 (241)
24 3kea_A K1L; tropism, ANK repea 100.0 3.1E-33 1.1E-37 310.9 14.5 182 2-283 11-197 (285)
25 3b7b_A Euchromatic histone-lys 100.0 6.1E-32 2.1E-36 292.8 24.1 226 426-794 4-230 (237)
26 3kea_A K1L; tropism, ANK repea 100.0 8.8E-33 3E-37 307.3 16.8 258 408-820 8-267 (285)
27 1oy3_D Transcription factor in 100.0 1.8E-32 6.2E-37 305.9 17.5 120 664-786 150-270 (282)
28 4b93_B Ankyrin repeat domain-c 100.0 2.2E-32 7.5E-37 300.1 16.8 93 18-141 5-106 (269)
29 2f8y_A Notch homolog 1, transl 100.0 4.2E-32 1.4E-36 291.1 16.8 214 2-327 2-217 (223)
30 4b93_B Ankyrin repeat domain-c 100.0 1.9E-32 6.6E-37 300.5 13.8 219 544-801 11-246 (269)
31 1s70_B 130 kDa myosin-binding 100.0 3.9E-32 1.3E-36 305.9 14.7 220 1-289 50-274 (299)
32 1s70_B 130 kDa myosin-binding 100.0 1.4E-31 4.9E-36 301.3 17.3 92 701-795 195-286 (299)
33 3eu9_A Huntingtin-interacting 100.0 7.9E-31 2.7E-35 284.8 22.6 230 434-802 8-238 (240)
34 3eu9_A Huntingtin-interacting 100.0 6.6E-31 2.3E-35 285.4 20.4 145 16-283 1-145 (240)
35 3aji_A 26S proteasome non-ATPa 100.0 3.8E-31 1.3E-35 285.3 18.2 166 22-278 4-170 (231)
36 2f8y_A Notch homolog 1, transl 100.0 2.3E-30 7.8E-35 277.5 21.6 187 544-802 25-219 (223)
37 1sw6_A Regulatory protein SWI6 100.0 2.4E-32 8.2E-37 310.2 6.3 80 695-785 248-327 (327)
38 2dzn_A Probable 26S proteasome 100.0 1.9E-30 6.5E-35 279.3 19.7 211 24-483 2-219 (228)
39 1sw6_A Regulatory protein SWI6 100.0 1.4E-32 4.8E-37 312.1 2.0 261 3-483 31-327 (327)
40 2dzn_A Probable 26S proteasome 100.0 2E-30 7E-35 279.0 18.0 203 1-294 12-222 (228)
41 4gpm_A Engineered protein OR26 100.0 1.5E-29 5.1E-34 255.0 19.9 159 546-802 6-164 (169)
42 4gpm_A Engineered protein OR26 100.0 9.2E-30 3.1E-34 256.5 16.1 155 26-275 6-164 (169)
43 1ikn_D Protein (I-kappa-B-alph 100.0 6.3E-30 2.2E-34 276.5 12.9 217 18-340 2-225 (236)
44 2rfa_A Transient receptor pote 100.0 5.7E-29 1.9E-33 268.4 18.4 193 544-803 3-226 (232)
45 2rfa_A Transient receptor pote 100.0 1.4E-28 4.8E-33 265.3 17.7 206 23-327 2-223 (232)
46 3hra_A Ankyrin repeat family p 100.0 7.3E-28 2.5E-32 253.2 22.1 182 544-797 5-201 (201)
47 1ikn_D Protein (I-kappa-B-alph 100.0 2.7E-29 9.3E-34 271.6 9.6 186 544-801 8-211 (236)
48 3hra_A Ankyrin repeat family p 100.0 6.7E-28 2.3E-32 253.6 18.7 192 21-323 2-200 (201)
49 2pnn_A Transient receptor pote 100.0 1.9E-28 6.5E-33 271.4 12.5 226 433-803 11-263 (273)
50 2etb_A Transient receptor pote 99.9 6.7E-28 2.3E-32 264.2 14.4 206 544-800 2-247 (256)
51 2pnn_A Transient receptor pote 99.9 4.4E-28 1.5E-32 268.4 11.6 161 13-286 2-190 (273)
52 2etb_A Transient receptor pote 99.9 5E-28 1.7E-32 265.3 10.9 204 23-325 1-245 (256)
53 3jxi_A Vanilloid receptor-rela 99.9 9.7E-27 3.3E-31 255.7 13.4 212 544-802 5-253 (260)
54 4hbd_A KN motif and ankyrin re 99.9 6.2E-27 2.1E-31 258.5 10.7 187 544-797 76-273 (276)
55 2aja_A Ankyrin repeat family p 99.9 1.4E-28 4.7E-33 280.6 -3.6 310 197-796 46-371 (376)
56 2rfm_A Putative ankyrin repeat 99.9 1.4E-26 4.9E-31 241.1 11.2 164 16-270 27-190 (192)
57 2aja_A Ankyrin repeat family p 99.9 6.4E-29 2.2E-33 283.3 -7.7 279 2-493 77-370 (376)
58 2y1l_E Darpin-8.4; hydrolase-i 99.9 4E-25 1.4E-29 224.7 19.3 157 543-797 13-169 (169)
59 3v30_A DNA-binding protein rfx 99.9 2.8E-26 9.5E-31 234.2 10.4 169 24-283 2-171 (172)
60 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.8E-25 6.2E-30 225.7 15.9 157 544-799 5-162 (162)
61 3jxi_A Vanilloid receptor-rela 99.9 1.9E-26 6.4E-31 253.4 8.9 208 21-326 2-250 (260)
62 4hbd_A KN motif and ankyrin re 99.9 8.3E-26 2.8E-30 249.5 12.6 190 24-325 76-274 (276)
63 1ihb_A P18-INK4C(INK6), cyclin 99.9 9.3E-26 3.2E-30 227.9 11.4 158 23-272 4-162 (162)
64 3v31_A Ankyrin repeat family A 99.9 3.7E-25 1.3E-29 224.7 15.6 158 544-799 3-160 (167)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.1E-25 7.1E-30 226.8 13.6 159 21-270 11-169 (169)
66 2rfm_A Putative ankyrin repeat 99.9 3.3E-25 1.1E-29 230.8 15.0 119 676-797 72-190 (192)
67 2vge_A RELA-associated inhibit 99.9 1.5E-27 5E-32 254.9 -4.4 209 7-329 1-216 (229)
68 3v30_A DNA-binding protein rfx 99.9 8.5E-25 2.9E-29 223.2 15.6 129 673-804 37-165 (172)
69 3v31_A Ankyrin repeat family A 99.9 1.3E-24 4.6E-29 220.5 15.8 158 23-271 2-159 (167)
70 3f6q_A Integrin-linked protein 99.9 4.7E-25 1.6E-29 226.6 12.1 168 22-280 3-171 (179)
71 1awc_B Protein (GA binding pro 99.9 5.9E-24 2E-28 212.1 17.6 117 674-793 36-152 (153)
72 3f6q_A Integrin-linked protein 99.9 3.1E-24 1.1E-28 220.5 15.8 127 675-804 42-168 (179)
73 1awc_B Protein (GA binding pro 99.9 4.6E-24 1.6E-28 212.9 14.8 87 24-142 2-88 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.9 4.4E-24 1.5E-28 216.1 14.6 122 673-798 43-164 (165)
75 2vge_A RELA-associated inhibit 99.9 1.4E-26 4.8E-31 247.3 -4.7 107 680-792 95-206 (229)
76 3twr_A Tankyrase-2; ankyrin re 99.9 1.1E-24 3.6E-29 220.7 8.7 160 20-271 4-164 (165)
77 1d9s_A Cyclin-dependent kinase 99.9 3.9E-24 1.3E-28 208.4 9.8 135 14-272 2-136 (136)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.1E-23 1.4E-27 206.9 17.2 112 681-796 44-155 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1E-24 3.4E-29 235.5 4.5 166 22-279 3-171 (239)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 6.3E-24 2.1E-28 212.5 7.9 145 17-286 5-150 (156)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.7E-23 1.6E-27 206.4 14.1 153 24-269 2-155 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 4.1E-23 1.4E-27 201.1 12.5 132 664-799 4-136 (136)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-23 3.7E-28 227.4 9.0 129 673-804 38-169 (239)
84 3t8k_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 214.8 7.8 160 2-276 17-183 (186)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-22 5E-27 202.5 11.5 136 666-805 6-142 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 7.2E-22 2.5E-26 192.3 13.9 127 668-797 10-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-21 4.2E-26 188.0 14.5 126 671-799 1-126 (126)
88 3t8k_A Uncharacterized protein 99.9 2.5E-22 8.5E-27 205.9 7.6 130 672-801 38-181 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-21 3.8E-26 191.0 11.1 127 20-270 10-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-21 6.5E-26 186.7 12.5 126 23-272 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.8 5E-22 1.7E-26 193.8 6.1 134 14-272 1-134 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.8 1.9E-21 6.4E-26 189.7 7.2 130 667-799 5-134 (137)
93 3aaa_C Myotrophin, protein V-1 99.8 2.8E-20 9.7E-25 177.4 10.0 117 670-789 5-121 (123)
94 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.3E-20 2.2E-24 164.9 11.5 93 704-799 1-93 (93)
95 3ehr_A Osteoclast-stimulating 99.8 1E-20 3.5E-25 201.8 5.4 140 18-281 67-207 (222)
96 3ehr_A Osteoclast-stimulating 99.8 3.2E-20 1.1E-24 198.0 8.7 137 666-805 67-204 (222)
97 3aaa_C Myotrophin, protein V-1 99.8 7.2E-20 2.5E-24 174.6 7.8 118 20-261 3-120 (123)
98 3deo_A Signal recognition part 99.8 3E-19 1E-23 183.7 12.4 141 667-826 39-180 (183)
99 1dcq_A PYK2-associated protein 99.8 7.6E-19 2.6E-23 193.0 14.5 130 673-802 131-266 (278)
100 3deo_A Signal recognition part 99.8 1.1E-19 3.7E-24 187.0 6.6 92 20-143 40-132 (183)
101 2b0o_E UPLC1; arfgap, structur 99.8 5E-19 1.7E-23 196.8 11.9 129 672-800 151-285 (301)
102 2b0o_E UPLC1; arfgap, structur 99.8 3E-19 1E-23 198.5 10.1 139 22-290 149-296 (301)
103 3ui2_A Signal recognition part 99.8 8E-19 2.7E-23 189.5 12.4 143 666-827 39-182 (244)
104 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-18 4.5E-23 208.8 15.3 130 674-803 134-269 (497)
105 3ui2_A Signal recognition part 99.8 1.1E-19 3.6E-24 196.4 5.1 143 21-272 42-185 (244)
106 3jue_A Arfgap with coiled-coil 99.7 5E-18 1.7E-22 192.6 12.9 129 668-799 195-326 (368)
107 3jue_A Arfgap with coiled-coil 99.7 3.7E-18 1.3E-22 193.6 10.8 143 21-287 196-344 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.7 5.2E-18 1.8E-22 203.6 12.4 130 23-276 131-269 (497)
109 1dcq_A PYK2-associated protein 99.7 2.2E-17 7.7E-22 181.2 12.3 126 24-273 130-264 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.7 5E-18 1.7E-22 159.5 6.0 100 702-804 6-105 (115)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.7 4.1E-17 1.4E-21 146.4 11.5 93 671-766 1-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.7 1.7E-17 5.8E-22 155.9 8.3 109 667-778 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 2.3E-16 7.8E-21 146.5 9.8 90 701-793 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 6.6E-16 2.3E-20 143.3 5.4 93 17-140 17-109 (110)
115 3u9h_A Tankyrase-2; protein-li 97.4 0.00025 8.5E-09 73.4 7.8 110 872-1024 29-138 (240)
116 2kg5_A ARF-GAP, RHO-GAP domain 93.5 0.12 4.3E-06 44.9 6.1 80 793-872 14-94 (100)
117 2e8n_A Ephrin type-A receptor 83.2 1.6 5.5E-05 36.9 5.3 58 807-864 14-72 (88)
118 2kso_A Ephrin type-A receptor 82.4 1.5 5.3E-05 36.4 4.7 58 808-865 19-77 (82)
119 3h8m_A Ephrin type-A receptor 82.1 2.1 7.3E-05 36.2 5.6 58 807-864 27-85 (90)
120 1ucv_A Ephrin type-A receptor 82.1 1.9 6.6E-05 35.7 5.3 58 808-865 10-68 (81)
121 3hkv_A PARP-10, poly [ADP-ribo 81.4 2.6 8.8E-05 42.6 6.9 98 875-1024 12-112 (217)
122 1b4f_A EPHB2; SAM domain, EPH 81.1 2.2 7.6E-05 35.5 5.3 58 807-864 13-71 (82)
123 3k1r_B Usher syndrome type-1G 81.0 1.7 5.9E-05 35.2 4.4 53 811-864 8-60 (74)
124 2eao_A Ephrin type-B receptor 80.7 2.2 7.6E-05 37.0 5.3 60 807-866 24-84 (99)
125 1b0x_A Protein (EPHA4 receptor 80.4 2.1 7E-05 36.8 5.0 58 807-864 28-86 (94)
126 2qkq_A Ephrin type-B receptor 79.7 1.5 5.1E-05 36.7 3.8 59 807-865 17-76 (83)
127 3smj_A Poly [ADP-ribose] polym 79.2 3.5 0.00012 40.9 7.0 94 875-1024 10-106 (193)
128 2k4p_A Phosphatidylinositol-3, 78.5 2 6.9E-05 36.0 4.2 57 807-863 28-85 (86)
129 2gle_A Neurabin-1; SAM domain, 78.0 3.5 0.00012 33.5 5.4 56 808-863 12-67 (74)
130 3kka_C Ephrin type-A receptor 77.4 2.6 8.8E-05 35.4 4.5 56 809-864 25-81 (86)
131 2pqf_A Poly [ADP-ribose] polym 76.4 5.3 0.00018 39.8 7.5 98 872-1024 10-110 (198)
132 1ow5_A Serine/threonine-protei 73.9 4.1 0.00014 33.3 4.6 57 810-866 20-77 (85)
133 3hil_A Ephrin type-A receptor 72.4 2.3 8E-05 35.2 3.0 55 808-862 26-81 (82)
134 3blj_A Poly(ADP-ribose) polyme 72.1 6.8 0.00023 39.8 7.0 95 874-1024 37-134 (221)
135 1v38_A SAM-domain protein sams 70.0 7.3 0.00025 31.9 5.5 60 808-867 15-75 (78)
136 3bq7_A Diacylglycerol kinase d 68.1 6.1 0.00021 32.7 4.7 54 812-865 19-72 (81)
137 1x40_A ARAP2; ASAP-related pro 67.1 3.4 0.00012 35.1 3.0 59 808-866 18-77 (91)
138 1v85_A Similar to ring finger 66.6 15 0.0005 31.2 6.9 55 813-867 30-88 (91)
139 3bs5_B Connector enhancer of k 66.0 5.6 0.00019 32.8 4.0 50 816-865 22-71 (80)
140 2ean_A Connector enhancer of k 64.5 5.6 0.00019 33.1 3.8 49 816-864 26-74 (83)
141 2f3n_A SH3 and multiple ankyri 63.2 3.7 0.00013 33.5 2.4 52 813-864 15-66 (76)
142 2dl0_A SAM and SH3 domain-cont 57.4 7.7 0.00026 33.3 3.4 60 808-867 26-86 (97)
143 2eam_A Putative 47 kDa protein 55.1 8.8 0.0003 31.6 3.3 60 808-867 15-77 (80)
144 2lmr_A ODIN, ankyrin repeat an 54.2 8.2 0.00028 33.4 3.1 60 808-867 32-94 (101)
145 2b6g_A VTS1P; alpha-helix, pen 53.2 23 0.00078 31.4 5.7 51 811-863 55-105 (119)
146 2d3d_A VTS1 protein; RNA bindi 51.9 17 0.00059 30.2 4.4 49 814-864 27-75 (88)
147 2e8o_A SAM domain and HD domai 48.7 9.2 0.00031 33.3 2.6 47 820-866 49-95 (103)
148 3bs7_A Protein aveugle; sterIl 45.1 20 0.00069 29.2 4.0 49 816-864 21-69 (78)
149 3sei_A Caskin-1; SAM domain, p 40.6 13 0.00043 35.0 2.3 54 812-865 17-70 (149)
150 3bs5_A Protein aveugle; sterIl 40.6 34 0.0012 29.9 4.9 49 816-864 41-89 (106)
151 3sei_A Caskin-1; SAM domain, p 37.7 33 0.0011 32.1 4.7 56 808-863 82-138 (149)
152 2ke7_A Ankyrin repeat and ster 37.6 20 0.00068 31.1 2.9 57 809-865 26-85 (103)
153 2es6_A VTS1P; SAM domain, prot 32.6 37 0.0013 29.0 3.6 46 817-864 43-88 (101)
154 2x5y_A Zinc finger CCCH-type a 30.6 55 0.0019 31.5 5.2 89 874-1024 5-96 (173)
155 1kw4_A Polyhomeotic; SAM domai 30.3 54 0.0019 27.5 4.4 49 816-865 31-80 (89)
156 1wwv_A Connector enhancer of k 27.5 57 0.002 27.5 4.0 44 823-866 34-77 (91)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-58 Score=545.78 Aligned_cols=399 Identities=31% Similarity=0.383 Sum_probs=300.7
Q ss_pred HcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccc
Q psy8898 12 ASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYG 91 (1236)
Q Consensus 12 ~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 91 (1236)
+.|+++|..|..|+||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~---------------- 65 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY---------------- 65 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----------------
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----------------
Confidence 4689999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCC
Q psy8898 92 IGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNV 171 (1236)
Q Consensus 92 ~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1236)
|+++|++++.++..|.||||+|+..|+.++++.|++......
T Consensus 66 ---------------Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------- 107 (437)
T 1n11_A 66 ---------------LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN----------------------- 107 (437)
T ss_dssp ---------------HHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-----------------------
T ss_pred ---------------HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-----------------------
Confidence 999999999999988888888888888888877776531100
Q ss_pred CCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy8898 172 SLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPL 251 (1236)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL 251 (1236)
.....|.||||+|+..|+.++|++|++.|++++..+..|+|||
T Consensus 108 -------------------------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 150 (437)
T 1n11_A 108 -------------------------------------LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150 (437)
T ss_dssp -------------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred -------------------------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH
Confidence 0011377888888888888888888888888887788888888
Q ss_pred HHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCC
Q psy8898 252 HEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHP 331 (1236)
Q Consensus 252 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~ 331 (1236)
|+|+..|+.+++++|+++|++++..+..|.||
T Consensus 151 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~------------------------------------------------ 182 (437)
T 1n11_A 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTP------------------------------------------------ 182 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH------------------------------------------------
Confidence 88888888888888888888777766555544
Q ss_pred CCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCC
Q psy8898 332 YTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGD 411 (1236)
Q Consensus 332 ~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~ 411 (1236)
|+.|+..|+
T Consensus 183 -----------------------------------------------------------------------L~~A~~~~~ 191 (437)
T 1n11_A 183 -----------------------------------------------------------------------LHVAVHHNN 191 (437)
T ss_dssp -----------------------------------------------------------------------HHHHHHTTC
T ss_pred -----------------------------------------------------------------------HHHHHHcCC
Confidence 344455566
Q ss_pred HHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhc
Q psy8898 412 MTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491 (1236)
Q Consensus 412 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L 491 (1236)
.+++++|++. +..++..+.++ +||||+|+..|+.+++++|+++|++++..+. .
T Consensus 192 ~~~v~~Ll~~-g~~~~~~~~~g--~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~-------------------- 244 (437)
T 1n11_A 192 LDIVKLLLPR-GGSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSANAESV----Q-------------------- 244 (437)
T ss_dssp HHHHHHHGGG-TCCSCCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----T--------------------
T ss_pred HHHHHHHHhC-CCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----C--------------------
Confidence 6666666665 44444444443 4777777777777777777777777643322 3
Q ss_pred CCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCc
Q psy8898 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571 (1236)
Q Consensus 492 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~ 571 (1236)
|.||||+|+..|+.+++++|+++|++++
T Consensus 245 ----------------------------------------------------g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 272 (437)
T 1n11_A 245 ----------------------------------------------------GVTPLHLAAQEGHAEMVALLLSKQANGN 272 (437)
T ss_dssp ----------------------------------------------------CCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred ----------------------------------------------------CCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence 4555666666666667777766666555
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCC
Q psy8898 572 VADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIG 651 (1236)
Q Consensus 572 ~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 651 (1236)
..+..|.|||
T Consensus 273 ~~~~~g~t~L---------------------------------------------------------------------- 282 (437)
T 1n11_A 273 LGNKSGLTPL---------------------------------------------------------------------- 282 (437)
T ss_dssp CCCTTCCCHH----------------------------------------------------------------------
T ss_pred CCCCCCCCHH----------------------------------------------------------------------
Confidence 4443333322
Q ss_pred cccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcC
Q psy8898 652 WCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731 (1236)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~g 731 (1236)
|.|+..|+.+++++|++.+......+..|+||||+|+.. ++.++|++|+++|
T Consensus 283 -------------------------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g 334 (437)
T 1n11_A 283 -------------------------HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY---GNIKLVKFLLQHQ 334 (437)
T ss_dssp -------------------------HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS---SCSHHHHHHHHTT
T ss_pred -------------------------HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc---CcHHHHHHHHhcC
Confidence 223445666666666666665555556688888888886 7899999999999
Q ss_pred CCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8898 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797 (1236)
Q Consensus 732 adin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~g 797 (1236)
+++|.+|..|+||||+|++.|+.++|++|+++|++++.+|.+|+|||++|.+.|+.+++++|....
T Consensus 335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999997654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.9e-55 Score=520.07 Aligned_cols=290 Identities=32% Similarity=0.419 Sum_probs=210.4
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhH
Q psy8898 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTREL 292 (1236)
Q Consensus 213 ~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~ 292 (1236)
.|+||||+||..|+.++|++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++.++..|.||
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~--------- 83 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP--------- 83 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH---------
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH---------
Confidence 68888888888888888888888888888888888888888888888888888888888777665544443
Q ss_pred HHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCC
Q psy8898 293 QQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQ 372 (1236)
Q Consensus 293 ~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1236)
T Consensus 84 -------------------------------------------------------------------------------- 83 (437)
T 1n11_A 84 -------------------------------------------------------------------------------- 83 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHH
Q psy8898 373 SGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVE 452 (1236)
Q Consensus 373 ~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~ 452 (1236)
|+.|+..|+.+++++|++. +.+++..+..+ .||||+|+..|+.++|+
T Consensus 84 ------------------------------L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g--~t~L~~A~~~g~~~~v~ 130 (437)
T 1n11_A 84 ------------------------------LHCAARIGHTNMVKLLLEN-NANPNLATTAG--HTPLHIAAREGHVETVL 130 (437)
T ss_dssp ------------------------------HHHHHHHTCHHHHHHHHHH-TCCTTCCCTTC--CCHHHHHHHHTCHHHHH
T ss_pred ------------------------------HHHHHHCCCHHHHHHHHhC-CCCCCCCCCCC--CcHHHHHHHcCCHHHHH
Confidence 3333444555555555554 44444444433 36666666666666666
Q ss_pred HHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCccccccc
Q psy8898 453 YLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTA 532 (1236)
Q Consensus 453 ~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 532 (1236)
+|+++|++++..+.
T Consensus 131 ~Ll~~~~~~~~~~~------------------------------------------------------------------ 144 (437)
T 1n11_A 131 ALLEKEASQACMTK------------------------------------------------------------------ 144 (437)
T ss_dssp HHHHTTCCSCCCCT------------------------------------------------------------------
T ss_pred HHHhCCCCCcCCCC------------------------------------------------------------------
Confidence 66666655432211
Q ss_pred CCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcc
Q psy8898 533 GRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVP 612 (1236)
Q Consensus 533 ~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~ 612 (1236)
.|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 145 ----------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-------------------------------- 182 (437)
T 1n11_A 145 ----------KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP-------------------------------- 182 (437)
T ss_dssp ----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH--------------------------------
T ss_pred ----------CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH--------------------------------
Confidence 16677788888888888888888877766554443333
Q ss_pred cCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhh
Q psy8898 613 CTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFL 692 (1236)
Q Consensus 613 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll 692 (1236)
|+.|+..|+.+++++|+
T Consensus 183 ---------------------------------------------------------------L~~A~~~~~~~~v~~Ll 199 (437)
T 1n11_A 183 ---------------------------------------------------------------LHVAVHHNNLDIVKLLL 199 (437)
T ss_dssp ---------------------------------------------------------------HHHHHHTTCHHHHHHHG
T ss_pred ---------------------------------------------------------------HHHHHHcCCHHHHHHHH
Confidence 33335667777888888
Q ss_pred ccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCC
Q psy8898 693 TSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDV 772 (1236)
Q Consensus 693 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~ 772 (1236)
+.+......+..|+||||+|+.. ++.+++++|+++|++++.++..|+||||+|++.|+.++|++|+++|++++..|.
T Consensus 200 ~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 276 (437)
T 1n11_A 200 PRGGSPHSPAWNGYTPLHIAAKQ---NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276 (437)
T ss_dssp GGTCCSCCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred hCCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence 87776666666688888888886 778888888888888888888888888888888888888888888888888888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8898 773 LGQTALHRTARDDKTQAVRVLLSHNA 798 (1236)
Q Consensus 773 ~G~tpL~~A~~~~~~~iv~~Ll~~ga 798 (1236)
.|.||||+|+..|+.+++++|+++|+
T Consensus 277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ 302 (437)
T 1n11_A 277 SGLTPLHLVAQEGHVPVADVLIKHGV 302 (437)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCc
Confidence 88888888888888887777776553
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-41 Score=390.00 Aligned_cols=304 Identities=26% Similarity=0.329 Sum_probs=240.2
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchh
Q psy8898 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-WQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRE 291 (1236)
Q Consensus 213 ~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~ 291 (1236)
+|.|+||.||++|++++|++||++|+++|.++. .|+||||+|+..|+.++|++|+++|++++..+..+.+++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~------- 96 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF------- 96 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-------
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchh-------
Confidence 488999999999999999999999999999875 499999999999999999999999999998887666652
Q ss_pred HHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCC
Q psy8898 292 LQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNG 371 (1236)
Q Consensus 292 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1236)
T Consensus 97 -------------------------------------------------------------------------------- 96 (337)
T 4g8k_A 97 -------------------------------------------------------------------------------- 96 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHH
Q psy8898 372 QSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVV 451 (1236)
Q Consensus 372 ~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv 451 (1236)
+.++..+....+..+++. +.+++..+..| +||||+|+..|+.+++
T Consensus 97 --------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g--~t~l~~A~~~~~~~~~ 141 (337)
T 4g8k_A 97 --------------------------------ILAAIAGSVKLLKLFLSK-GADVNECDFYG--FTAFMEAAVYGKVKAL 141 (337)
T ss_dssp --------------------------------HHHHHHTCHHHHHHHHTT-TCCTTCBCTTC--CBHHHHHHHTTCHHHH
T ss_pred --------------------------------HHHHhcccchhhHHhhhc-cchhhhhccCC--CCHHHHHHHcCcHHHH
Confidence 333444556666666665 56677766655 5999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccc
Q psy8898 452 EYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531 (1236)
Q Consensus 452 ~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 531 (1236)
++|+++|++++..... ...+ ...+.
T Consensus 142 ~~ll~~ga~~~~~~~~----~~~~---------------------------------------------------~~~~~ 166 (337)
T 4g8k_A 142 KFLYKRGANVNLRRKT----KEDQ---------------------------------------------------ERLRK 166 (337)
T ss_dssp HHHHHTTCCTTCCCCC----C--------------------------------------------------------CTT
T ss_pred HHHHHcCCCcchhhcc----cccc---------------------------------------------------ccccC
Confidence 9999999998654321 1000 00000
Q ss_pred cCCCCchhhhhccchhHHHHHhcCcHHHHHHHHh-CCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhh
Q psy8898 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVK-HGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLA 610 (1236)
Q Consensus 532 ~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a 610 (1236)
.|.||||+|+..|+.++|++|++ .|++++..|..|.||++.++..
T Consensus 167 -----------~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~----------------------- 212 (337)
T 4g8k_A 167 -----------GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS----------------------- 212 (337)
T ss_dssp -----------CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-----------------------
T ss_pred -----------CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-----------------------
Confidence 28899999999999999999996 5888888887777777765311
Q ss_pred cccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHH
Q psy8898 611 VPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKK 690 (1236)
Q Consensus 611 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ 690 (1236)
+...+...++++
T Consensus 213 --------------------------------------------------------------------~~~~~~~~i~~l 224 (337)
T 4g8k_A 213 --------------------------------------------------------------------SDDSDVEAITHL 224 (337)
T ss_dssp --------------------------------------------------------------------SCTTTHHHHHHH
T ss_pred --------------------------------------------------------------------cCcccHHHHHHH
Confidence 000011234555
Q ss_pred hhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHc-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccc
Q psy8898 691 FLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRK-GAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNL 769 (1236)
Q Consensus 691 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~ 769 (1236)
|++.+......+..|+||||+|+.. ++.+++++|++. |+++|.+|..|+||||+|++.|+.++|++|+++||++|.
T Consensus 225 Ll~~gad~n~~d~~g~t~L~~a~~~---~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 225 LLDHGADVNVRGERGKTPLILAVEK---KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp HHHTTCCTTCCCGGGCCHHHHHHHT---TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHh---hhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 5666555555555577888888876 789999999986 899999999999999999999999999999999999976
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q psy8898 770 VDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803 (1236)
Q Consensus 770 ~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 803 (1236)
+ ||||+|+.+|+.++|++||++||+++..
T Consensus 302 ~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 302 G-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp C-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred C-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 4 5999999999999999999999999875
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.9e-41 Score=384.19 Aligned_cols=305 Identities=30% Similarity=0.356 Sum_probs=241.3
Q ss_pred CCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCC
Q psy8898 22 DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNW-NFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100 (1236)
Q Consensus 22 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~-g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 100 (1236)
.+|.||||.||++|+.++|++||++|+++|.+|.. |+||||+|+..|+.++|++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~------------------------- 77 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL------------------------- 77 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH-------------------------
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHH-------------------------
Confidence 35789999999999999999999999999998765 9999999999999999988
Q ss_pred CcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccC
Q psy8898 101 HKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180 (1236)
Q Consensus 101 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1236)
|+++|++++.++..+
T Consensus 78 ------Ll~~ga~~~~~~~~~----------------------------------------------------------- 92 (337)
T 4g8k_A 78 ------LLRHGADPVLRKKNG----------------------------------------------------------- 92 (337)
T ss_dssp ------HHHTTCCTTCCCTTC-----------------------------------------------------------
T ss_pred ------HHHcCCchhhhccCC-----------------------------------------------------------
Confidence 999999998766544
Q ss_pred CCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q psy8898 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260 (1236)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~ 260 (1236)
.++++.++..+...++..+++.+++++..|..|+||||+|+..|+.
T Consensus 93 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~ 138 (337)
T 4g8k_A 93 ----------------------------------ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138 (337)
T ss_dssp ----------------------------------CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred ----------------------------------CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence 4567777777888999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCch
Q psy8898 261 EVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPG 340 (1236)
Q Consensus 261 ~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~ 340 (1236)
+++++|+++|++++..+....
T Consensus 139 ~~~~~ll~~ga~~~~~~~~~~----------------------------------------------------------- 159 (337)
T 4g8k_A 139 KALKFLYKRGANVNLRRKTKE----------------------------------------------------------- 159 (337)
T ss_dssp HHHHHHHHTTCCTTCCCCCC------------------------------------------------------------
T ss_pred HHHHHHHHcCCCcchhhcccc-----------------------------------------------------------
Confidence 999999999999876542110
Q ss_pred hHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHh
Q psy8898 341 TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLS 420 (1236)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~ 420 (1236)
T Consensus 160 -------------------------------------------------------------------------------- 159 (337)
T 4g8k_A 160 -------------------------------------------------------------------------------- 159 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCC
Q psy8898 421 SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLA-HGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAAN 499 (1236)
Q Consensus 421 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~ 499 (1236)
.....+. .|.||||+|+..|+.++|++|++ .|++++.. |..|.|++++++..+.
T Consensus 160 ----~~~~~~~--~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~----d~~g~t~l~~~~~~~~--------------- 214 (337)
T 4g8k_A 160 ----DQERLRK--GGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSD--------------- 214 (337)
T ss_dssp --------CTT--CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC----CTTSCCHHHHHHHHSC---------------
T ss_pred ----ccccccC--CCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc----CCCCCcHHHHHHHHcC---------------
Confidence 0111122 34599999999999999999996 58998544 4477777776654321
Q ss_pred CchhHHHHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCC
Q psy8898 500 DPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFT 579 (1236)
Q Consensus 500 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~t 579 (1236)
..+..+++++|+++|+++|.+|..|+|
T Consensus 215 -----------------------------------------------------~~~~~~i~~lLl~~gad~n~~d~~g~t 241 (337)
T 4g8k_A 215 -----------------------------------------------------DSDVEAITHLLLDHGADVNVRGERGKT 241 (337)
T ss_dssp -----------------------------------------------------TTTHHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred -----------------------------------------------------cccHHHHHHHHHHCCCCCCCcCCCCCC
Confidence 112345777788877777655544433
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccc
Q psy8898 580 PLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKM 659 (1236)
Q Consensus 580 pL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1236)
||
T Consensus 242 ~L------------------------------------------------------------------------------ 243 (337)
T 4g8k_A 242 PL------------------------------------------------------------------------------ 243 (337)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 33
Q ss_pred cccccccchhhccccHHHHHHHcCCHHHHHHhhcc-CCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCC
Q psy8898 660 ELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTS-DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738 (1236)
Q Consensus 660 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d 738 (1236)
|.|+..|+.++++.|++. +......+..|+||||+|+.. |+.++|++|+++|+|+|.+
T Consensus 244 -----------------~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~---g~~~iv~~Ll~~GAd~n~~- 302 (337)
T 4g8k_A 244 -----------------ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL---KLKKIAELLCKRGASTDCG- 302 (337)
T ss_dssp -----------------HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHTTSCSSTTC-
T ss_pred -----------------HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCC-
Confidence 334566777788888775 445555566689999999987 8999999999999999765
Q ss_pred CCCchHHHHHHHhCCHHHHHHHHHCCCCcccc
Q psy8898 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLV 770 (1236)
Q Consensus 739 ~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~ 770 (1236)
||||+|++.|+.++|++||++||++|..
T Consensus 303 ----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 303 ----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp ----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred ----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 5999999999999999999999999864
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.8e-38 Score=361.81 Aligned_cols=308 Identities=30% Similarity=0.330 Sum_probs=249.0
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchh
Q psy8898 213 LGLVPLHNACSYGHFEVTEMLIKA-GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRE 291 (1236)
Q Consensus 213 ~g~T~L~~Aa~~g~~~iv~~Ll~~-ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~ 291 (1236)
.|.|+||.||..|+.+.|+.|+.. +++++..|..|+||||+|+..|+.++|++|+++|++++.++..|.||
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-------- 94 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP-------- 94 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH--------
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH--------
Confidence 588999999999999999988865 89999999999999999999999999999999999999888776666
Q ss_pred HHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCC
Q psy8898 292 LQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNG 371 (1236)
Q Consensus 292 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1236)
T Consensus 95 -------------------------------------------------------------------------------- 94 (351)
T 3utm_A 95 -------------------------------------------------------------------------------- 94 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHH
Q psy8898 372 QSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVV 451 (1236)
Q Consensus 372 ~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv 451 (1236)
||.|+..|+.+++++|++. +.+++..+..+ +||||+|+..|+.+++
T Consensus 95 -------------------------------L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g--~t~L~~A~~~~~~~~v 140 (351)
T 3utm_A 95 -------------------------------LHNACSYGHYEVTELLLKH-GACVNAMDLWQ--FTPLHEAASKNRVEVC 140 (351)
T ss_dssp -------------------------------HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTC--CCHHHHHHHTTCHHHH
T ss_pred -------------------------------HHHHHHCCCHHHHHHHHHC-CCCCCCCCCCC--CCHHHHHHHcCCHHHH
Confidence 4556667778888888877 67777776655 5999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccc
Q psy8898 452 EYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531 (1236)
Q Consensus 452 ~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 531 (1236)
++|+++|++++ ..+..|.||+++|+..+..+.+.+.. ...++..++..++.+.++.++.....+....
T Consensus 141 ~~Ll~~g~~~~----~~~~~g~~~l~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 141 SLLLSHGADPT----LVNCHGKSAVDMAPTPELRERLTYEF--------KGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HHHHHTTCCTT----CCCTTSCCHHHHCSSHHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HHHHHcCCCCc----cccCCCCcchHHHhhhhhHHHHHhhh--------cccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence 99999999995 45569999999999888888777653 2355667777777777777776654333222
Q ss_pred cCCCCchhhhhccchhHHHHHhc---CcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhh
Q psy8898 532 AGRKSTPLHFAAGLVPLHNACSY---GHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALD 608 (1236)
Q Consensus 532 ~~~~~t~l~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~ 608 (1236)
. .|.||||+|+.. +..+++++|+++|++++.+|.
T Consensus 209 ~----------~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~--------------------------------- 245 (351)
T 3utm_A 209 Q----------SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK--------------------------------- 245 (351)
T ss_dssp T----------TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT---------------------------------
T ss_pred C----------CCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC---------------------------------
Confidence 1 266777777776 446677777766665544332
Q ss_pred hhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHH
Q psy8898 609 LAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRV 688 (1236)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v 688 (1236)
T Consensus 246 -------------------------------------------------------------------------------- 245 (351)
T 3utm_A 246 -------------------------------------------------------------------------------- 245 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCcc
Q psy8898 689 KKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768 (1236)
Q Consensus 689 ~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n 768 (1236)
.|+||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|++.|+.++|++|+++|++++
T Consensus 246 ---------------~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 246 ---------------DFMTPLHVAAER---AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307 (351)
T ss_dssp ---------------TCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred ---------------CCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 355666666665 78899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 769 LVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 769 ~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
.+|..|+||+++| +.+++++|.+.+..
T Consensus 308 ~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 308 IISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp CCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 9999999999998 77889999888753
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.7e-39 Score=371.36 Aligned_cols=332 Identities=44% Similarity=0.636 Sum_probs=236.9
Q ss_pred HHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccc
Q psy8898 9 YLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEA-DANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87 (1236)
Q Consensus 9 ~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~ 87 (1236)
.|++.+++.+..+..|.|+||.||..|+.+.|+.|+.. +++++..|..|.||||+|+..|+.++|++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~------------ 76 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL------------ 76 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHH------------
T ss_pred hccCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHH------------
Confidence 45556677777888999999999999999999888875 88999999999999999999999999988
Q ss_pred cccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccc
Q psy8898 88 YVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSC 167 (1236)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1236)
|+++|++++.++..
T Consensus 77 -------------------Ll~~g~~~~~~~~~----------------------------------------------- 90 (351)
T 3utm_A 77 -------------------LLQHGADVHAKDKG----------------------------------------------- 90 (351)
T ss_dssp -------------------HHHTTCCTTCCCTT-----------------------------------------------
T ss_pred -------------------HHHcCCCCCccCCC-----------------------------------------------
Confidence 99999998876554
Q ss_pred CCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCC
Q psy8898 168 GDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQ 247 (1236)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g 247 (1236)
|+||||+||..|+.+++++|+++|++++..|.+|
T Consensus 91 ----------------------------------------------g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g 124 (351)
T 3utm_A 91 ----------------------------------------------GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124 (351)
T ss_dssp ----------------------------------------------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred ----------------------------------------------CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 5567888888899999999999999999999999
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhccccc
Q psy8898 248 FTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVN 327 (1236)
Q Consensus 248 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~ 327 (1236)
+||||+|+..|+.+++++|+++|++++..+..|.||++++...+....+...+...++..++..++.+.++.++......
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999998887777766666666666666666666666655443222
Q ss_pred CCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHH
Q psy8898 328 FKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEAS 407 (1236)
Q Consensus 328 ~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~ 407 (1236)
..
T Consensus 205 ~~------------------------------------------------------------------------------ 206 (351)
T 3utm_A 205 FK------------------------------------------------------------------------------ 206 (351)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred hCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCc
Q psy8898 408 KGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGY---NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484 (1236)
Q Consensus 408 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~ 484 (1236)
.+ ..|.||||+|+.. +..+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus 207 ---------------------~~--~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~----~~~~~g~t~L~~A~~~g~ 259 (351)
T 3utm_A 207 ---------------------QP--QSHETALHCAVASLHPKRKQVAELLLRKGANVN----EKNKDFMTPLHVAAERAH 259 (351)
T ss_dssp ---------------------CT--TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT----CCCTTCCCHHHHHHHTTC
T ss_pred ---------------------CC--CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC----CcCCCCCCHHHHHHHcCC
Confidence 11 1223555555555 33455555555555552 223345555555555544
Q ss_pred hHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHH
Q psy8898 485 TQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV 564 (1236)
Q Consensus 485 ~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll 564 (1236)
.+++++|++.+... +..+. .|+||||+|+..|+.+++++|+
T Consensus 260 ~~~v~~Ll~~ga~~----------------------------n~~d~-----------~g~t~L~~A~~~~~~~~v~~Ll 300 (351)
T 3utm_A 260 NDVMEVLHKHGAKM----------------------------NALDS-----------LGQTALHRAALAGHLQTCRLLL 300 (351)
T ss_dssp HHHHHHHHHTTCCT----------------------------TCCCT-----------TSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCC----------------------------CCcCC-----------CCCCHHHHHHHcCcHHHHHHHH
Confidence 44444443322211 11111 2778888899999999999999
Q ss_pred hCCCCCccCCCCCCCHHHHHH---HHHHHhcCCCCcccCCCCCChhhhhc
Q psy8898 565 KHGANVNVADLWKFTPLHEAA---AKALLQHGADINLKNTDGKTALDLAV 611 (1236)
Q Consensus 565 ~~g~~v~~~d~~g~tpL~~a~---~~~Ll~~g~d~~~~~~~g~t~L~~a~ 611 (1236)
++|++++..|..|.||+++|. .++|.+.+. ....++.+++..|+
T Consensus 301 ~~gad~~~~~~~g~tal~~a~~~~~~~l~~~~~---~~~~~~~~~l~~A~ 347 (351)
T 3utm_A 301 SYGSDPSIISLQGFTAAQMGNEAVQQILSESTP---MRTSDVDYRLLEAS 347 (351)
T ss_dssp HTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC-------------------
T ss_pred HcCCCCCCcCCCCCChhhhhhHHHHHHHHhccc---cccCcceeehhhhh
Confidence 999999999999999999974 456666543 33456778888775
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-37 Score=347.67 Aligned_cols=276 Identities=29% Similarity=0.361 Sum_probs=224.3
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchh
Q psy8898 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAM-DLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRE 291 (1236)
Q Consensus 213 ~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~ 291 (1236)
+|.||||.|+..|+.++|++|++.|++++.. +..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-------- 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-------- 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH--------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH--------
Confidence 3789999999999999999999999999988 8889999999999999999999999999998877666655
Q ss_pred HHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCC
Q psy8898 292 LQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNG 371 (1236)
Q Consensus 292 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1236)
T Consensus 76 -------------------------------------------------------------------------------- 75 (285)
T 1wdy_A 76 -------------------------------------------------------------------------------- 75 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHH
Q psy8898 372 QSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVV 451 (1236)
Q Consensus 372 ~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv 451 (1236)
|+.|+..|+.+++++|++. +.+++..+..+ +||||+|+..|+.+++
T Consensus 76 -------------------------------L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~L~~A~~~~~~~~~ 121 (285)
T 1wdy_A 76 -------------------------------FLLAAIAGSVKLLKLFLSK-GADVNECDFYG--FTAFMEAAVYGKVKAL 121 (285)
T ss_dssp -------------------------------HHHHHHHTCHHHHHHHHHT-TCCTTCBCTTC--CBHHHHHHHTTCHHHH
T ss_pred -------------------------------HHHHHHcCCHHHHHHHHHc-CCCCCccCccc--CCHHHHHHHhCCHHHH
Confidence 4445566677777777776 56666666555 5999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccc
Q psy8898 452 EYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531 (1236)
Q Consensus 452 ~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 531 (1236)
++|+++|++++...... -. .. ..+.
T Consensus 122 ~~Ll~~g~~~~~~~~~~-------~~---------------------------------------~~---------~~~~ 146 (285)
T 1wdy_A 122 KFLYKRGANVNLRRKTK-------ED---------------------------------------QE---------RLRK 146 (285)
T ss_dssp HHHHHTTCCTTCCCCCC-------HH---------------------------------------HH---------HTTC
T ss_pred HHHHHhCCCcccccccH-------HH---------------------------------------HH---------hhcc
Confidence 99999998885543210 00 00 0000
Q ss_pred cCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhC-CCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhh
Q psy8898 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKH-GANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLA 610 (1236)
Q Consensus 532 ~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a 610 (1236)
.|.||||+|+..|+.+++++|+++ |++++..|..|.||||+
T Consensus 147 -----------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~--------------------------- 188 (285)
T 1wdy_A 147 -----------GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH--------------------------- 188 (285)
T ss_dssp -----------CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH---------------------------
T ss_pred -----------CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH---------------------------
Confidence 277899999999999999999987 77766555443333333
Q ss_pred cccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHH
Q psy8898 611 VPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKK 690 (1236)
Q Consensus 611 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ 690 (1236)
T Consensus 189 -------------------------------------------------------------------------------- 188 (285)
T 1wdy_A 189 -------------------------------------------------------------------------------- 188 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCcccCCCCCCChHHHHHhhCCC-CChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHH-CCCCcc
Q psy8898 691 FLTSDVVNFKHPYTGDTPLHCAVTSPY-PKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLR-LGAKVN 768 (1236)
Q Consensus 691 Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~ga~~n 768 (1236)
|+..+. ....+++++|+++|++++.+|..|+||||+|++.|+.++|++|++ .|++++
T Consensus 189 ---------------------a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 189 ---------------------ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247 (285)
T ss_dssp ---------------------HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred ---------------------HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence 222200 023789999999999999999999999999999999999999999 899999
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q psy8898 769 LVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804 (1236)
Q Consensus 769 ~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 804 (1236)
.+|..|+||||+|++.|+.+++++|+++||+++..+
T Consensus 248 ~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 248 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 999999999999999999999999999999998875
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-36 Score=335.73 Aligned_cols=263 Identities=29% Similarity=0.337 Sum_probs=228.9
Q ss_pred CCcHHHHHHHHHcCCCcccc-CCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeecc
Q psy8898 1 YGRKDVVEYLLASGASIHAR-DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFA 79 (1236)
Q Consensus 1 ~G~~~~v~~Ll~~ga~~n~~-d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 79 (1236)
+|+.++|++|+++|++++.+ +..|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---- 90 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL---- 90 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH----
T ss_pred cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH----
Confidence 58999999999999999988 7899999999999999999999999999999999999999999999999999988
Q ss_pred ccCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy8898 80 EHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPP 159 (1236)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~ 159 (1236)
|+++|++++..+..|.||||+|+..|+.++++.|++..........
T Consensus 91 ---------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~------- 136 (285)
T 1wdy_A 91 ---------------------------FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK------- 136 (285)
T ss_dssp ---------------------------HHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-------
T ss_pred ---------------------------HHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc-------
Confidence 9999999999999999999999999999999999986422111000
Q ss_pred CcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhc-CC
Q psy8898 160 SQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKA-GA 238 (1236)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~-ga 238 (1236)
.+.. . ......|.||||+|+..|+.+++++|++. |+
T Consensus 137 ----------------------------------~~~~---~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 173 (285)
T 1wdy_A 137 ----------------------------------TKED---Q------ERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173 (285)
T ss_dssp ----------------------------------CCHH---H------HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred ----------------------------------cHHH---H------HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC
Confidence 0000 0 00012588999999999999999999987 99
Q ss_pred CCCCCCCCCCcHHHHHHHcCc----HHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCCh
Q psy8898 239 NVNAMDLWQFTPLHEAASKSR----LEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDP 314 (1236)
Q Consensus 239 ~~n~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~ 314 (1236)
+++..|..|+||||+|+..++ .+++++|+++|++++.++..|.||
T Consensus 174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~------------------------------- 222 (285)
T 1wdy_A 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP------------------------------- 222 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-------------------------------
T ss_pred CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH-------------------------------
Confidence 999999999999999999999 999999999999999888766665
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCC
Q psy8898 315 SRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPP 394 (1236)
Q Consensus 315 ~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~ 394 (1236)
T Consensus 223 -------------------------------------------------------------------------------- 222 (285)
T 1wdy_A 223 -------------------------------------------------------------------------------- 222 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q psy8898 395 SVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465 (1236)
Q Consensus 395 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~ 465 (1236)
||.|+..|+.+++++|++..+.+++..+..| +||||+|+..|+.+++++|+++|++++.++
T Consensus 223 --------L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g--~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 223 --------LILAVEKKHLGLVQRLLEQEHIEINDTDSDG--KTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp --------HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred --------HHHHHHcCCHHHHHHHHhccCCCccccCCCC--CcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 4556677888888888886688888877766 599999999999999999999999997654
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=330.21 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=77.6
Q ss_pred CChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHc
Q psy8898 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARD 784 (1236)
Q Consensus 705 g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~ 784 (1236)
|+||||+|+.. ++.+++++|+++|++++. |..|+||||+|++.|+.++|++|+++|++++.+|.+|+||||+|+
T Consensus 190 g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~-- 263 (285)
T 3d9h_A 190 LGTPLYLACEN---QQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP-- 263 (285)
T ss_dssp TBCHHHHHHHT---TCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--
T ss_pred CCCHHHHHHHc---CcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--
Confidence 55666666665 789999999999999995 889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhC-CCCCC
Q psy8898 785 DKTQAVRVLLSH-NADTS 801 (1236)
Q Consensus 785 ~~~~iv~~Ll~~-ga~~~ 801 (1236)
++.+++++|+++ |++..
T Consensus 264 ~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 264 PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TTSHHHHHHHHHC-----
T ss_pred CccHHHHHHHHhhccCCC
Confidence 457899999998 76654
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-35 Score=344.70 Aligned_cols=302 Identities=20% Similarity=0.208 Sum_probs=190.9
Q ss_pred hhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHH
Q psy8898 399 LESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHE 478 (1236)
Q Consensus 399 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~ 478 (1236)
.+.+|..++..|+.+.++.+++.. ..+... .+++.-+...|+++++++++.... |..|.||||+
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~---------~~~g~t~L~~ 100 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHY-SLYPNP------QGYGNGNDFLGDFNHTNLQIPTEP---------EPESPIKLHT 100 (373)
T ss_dssp -------------------------------------------------------------------------CCCHHHH
T ss_pred cccccccccCCccccchhhhhhhh-ccccCc------cccCCCCCccccccccccccccCC---------CCCCccHHHH
Confidence 344566777777777777777652 222111 145556667777888877766432 3367888888
Q ss_pred HHhcCchHHHhhcCCCCCC--C-CCchhHHHHHHhcCChHHHHHHh--------CC-CCcccccccCCCCchhhhhccch
Q psy8898 479 AAQKGRTQLSALLPLSPSA--A-NDPLRELFEACKGGDLTKVKKLV--------NP-QTVNARDTAGRKSTPLHFAAGLV 546 (1236)
Q Consensus 479 A~~~~~~~iv~~L~~~~~~--~-~~~~~~L~~A~~~g~~~~v~~Ll--------~~-~~~~~~~~~~~~~t~l~~~~g~t 546 (1236)
|+..+ .+++++|...... + ..+.||||.|+..|+.+++++|+ +. .+++..+.. |+|
T Consensus 101 Aa~~~-~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~-----------g~T 168 (373)
T 2fo1_E 101 EAAGS-YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-----------ENT 168 (373)
T ss_dssp HHHSS-SCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT-----------SCC
T ss_pred HhcCC-chHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC-----------CCC
Confidence 88744 4677777543322 2 45678888888888877777765 22 233333332 778
Q ss_pred hHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHH-------HHHHHhcC---CCCcccCCCCCChhhhhcccCcc
Q psy8898 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHG---ADINLKNTDGKTALDLAVPCTRA 616 (1236)
Q Consensus 547 ~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~-------~~~Ll~~g---~d~~~~~~~g~t~L~~a~~~~~~ 616 (1236)
|||+|+..|+.++|++|+++|++++..|..|.||||+|+ +++|++++ ++++..|..|.||||+|
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A------ 242 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV------ 242 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH------
T ss_pred HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH------
Confidence 888888888888888888888888887777777777776 45666665 56666666665555555
Q ss_pred cccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcC---CHHHHHHhhc
Q psy8898 617 VLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQG---DPSRVKKFLT 693 (1236)
Q Consensus 617 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g---~~~~v~~Ll~ 693 (1236)
+..+ +.+++++|++
T Consensus 243 ---------------------------------------------------------------~~~~~~~~~~~v~~Ll~ 259 (373)
T 2fo1_E 243 ---------------------------------------------------------------AHNEGRDQVASAKLLVE 259 (373)
T ss_dssp ---------------------------------------------------------------HHSCSTTHHHHHHHHHH
T ss_pred ---------------------------------------------------------------HHhCCcchHHHHHHHHH
Confidence 5555 7788889988
Q ss_pred cCCcccC--------CCCCCChHHHHHhhCCCCChHHHHHHHHHcC-CCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCC
Q psy8898 694 SDVVNFK--------HPYTGDTPLHCAVTSPYPKRKAIVESLIRKG-AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764 (1236)
Q Consensus 694 ~~~~~~~--------~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~g 764 (1236)
.+..... .+..|+||||+|+.. ++.++|++|+++| +++|.+|..|+||||+|+..|+.++|++|+++|
T Consensus 260 ~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 336 (373)
T 2fo1_E 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQV---SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336 (373)
T ss_dssp HTCCSSCCSGGGTSSSSCCCCCTHHHHHSS---CCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCcccccccccCcccccCCCHHHHHHHh---CCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 8765443 345699999999997 8999999999885 999999999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy8898 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800 (1236)
Q Consensus 765 a~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~ 800 (1236)
++++.+|..|+|||++|+.+|+.+++++|+++|++.
T Consensus 337 ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 337 ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999863
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-35 Score=344.82 Aligned_cols=287 Identities=21% Similarity=0.234 Sum_probs=222.8
Q ss_pred CcHHHHHHHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHhCCCceEEeeeccc
Q psy8898 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD-NWNFTPLHEAAAKGKTDVCIGIYFAE 80 (1236)
Q Consensus 2 G~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d-~~g~t~L~~A~~~g~~~iv~~Ll~~~ 80 (1236)
|+++++++++.. .+|..|+||||+|+..++ ++|++|+. +++|..| ..|+||||+|+..|+.+++++|+..
T Consensus 77 g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~- 147 (373)
T 2fo1_E 77 GDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH- 147 (373)
T ss_dssp ----------------------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH-
T ss_pred cccccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH-
Confidence 444555554332 457899999999999665 88888864 5889998 7899999999999999999884311
Q ss_pred cCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy8898 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPS 160 (1236)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~ 160 (1236)
.++.|+++|++++.+|..|.||||+|+..|+.++|+.|++......
T Consensus 148 ----------------------~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~------------ 193 (373)
T 2fo1_E 148 ----------------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT------------ 193 (373)
T ss_dssp ----------------------HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC------------
T ss_pred ----------------------HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc------------
Confidence 1233569999999999999999999999999999998887531100
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcC---
Q psy8898 161 QYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAG--- 237 (1236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~g--- 237 (1236)
.....|.||||+|+..|+.+++++|++.|
T Consensus 194 ------------------------------------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 225 (373)
T 2fo1_E 194 ------------------------------------------------IYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225 (373)
T ss_dssp ------------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred ------------------------------------------------ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence 01114889999999999999999999998
Q ss_pred CCCCCCCCCCCcHHHHHHHcC---cHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCCh
Q psy8898 238 ANVNAMDLWQFTPLHEAASKS---RLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDP 314 (1236)
Q Consensus 238 a~~n~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~ 314 (1236)
++++..|..|+||||+|+..+ +.+++++|+++|++++..+....
T Consensus 226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~--------------------------------- 272 (373)
T 2fo1_E 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK--------------------------------- 272 (373)
T ss_dssp HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT---------------------------------
T ss_pred cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc---------------------------------
Confidence 899999999999999999998 89999999999999876431000
Q ss_pred HHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCC
Q psy8898 315 SRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPP 394 (1236)
Q Consensus 315 ~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~ 394 (1236)
..
T Consensus 273 ------------------------------------------------------------------------------~~ 274 (373)
T 2fo1_E 273 ------------------------------------------------------------------------------DS 274 (373)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred CcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCC
Q psy8898 395 SVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFT 474 (1236)
Q Consensus 395 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t 474 (1236)
....+.|+||.|+..|+.++|++|++..+.+++..+.+|. ||||+|+..|+.++|++|+++|++++ .+|..|+|
T Consensus 275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~--TpL~~A~~~g~~~iv~~Ll~~gad~~----~~d~~g~t 348 (373)
T 2fo1_E 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK--TPIMLAAQEGRIEVVMYLIQQGASVE----AVDATDHT 348 (373)
T ss_dssp SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC--CHHHHHHHHTCHHHHHHHHHTTCCSS----CCCSSSCC
T ss_pred ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCC--CHHHHHHHcCCHHHHHHHHHcCCCcc----CCCCCCCC
Confidence 0112334567788899999999999987788888887664 99999999999999999999999995 45569999
Q ss_pred hHHHHHhcCchHHHhhcCCCCC
Q psy8898 475 PLHEAAQKGRTQLSALLPLSPS 496 (1236)
Q Consensus 475 ~L~~A~~~~~~~iv~~L~~~~~ 496 (1236)
||++|+.+|+.+++++|++.+.
T Consensus 349 ~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 349 ARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHcCCHHHHHHHHhcCc
Confidence 9999999999999999987654
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=321.74 Aligned_cols=68 Identities=29% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q psy8898 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280 (1236)
Q Consensus 213 ~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g 280 (1236)
+|+||||+||..|+.++|++|++.|+++|..|.+|+||||+|+..|+.+++++|+++|++++..|..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 69 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999887665433
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.9e-36 Score=347.21 Aligned_cols=180 Identities=24% Similarity=0.282 Sum_probs=136.0
Q ss_pred CCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccC
Q psy8898 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 14 ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
+.+++..|.+|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.++|++
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~------------------ 71 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY------------------ 71 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH------------------
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH------------------
Confidence 56788899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++. .+|.||||+|+..|+.++++.|++.....
T Consensus 72 -------------Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------------------------- 110 (364)
T 3ljn_A 72 -------------LASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKER-------------------------- 110 (364)
T ss_dssp -------------HHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred -------------HHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhcccc--------------------------
Confidence 9999996653 57888888888888888888888651000
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcC---Cc----cccCCchHHHHHHhcC--cHHHHHHHHhcCCCCCCCC
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPS---GQ----AVALGLVPLHNACSYG--HFEVTEMLIKAGANVNAMD 244 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~---g~----~~~~g~T~L~~Aa~~g--~~~iv~~Ll~~ga~~n~~d 244 (1236)
+. .+ .......... .. ....|.||||+|+..| +.++|++|+++|++++..|
T Consensus 111 ---------~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 111 ---------GQ---------MP--ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp ---------TC---------CH--HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred ---------CC---------CH--HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence 00 00 0000000000 01 1126888888888888 8888888888888888888
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q psy8898 245 LWQFTPLHEAASKSRLEVCSLLLSEGAD 272 (1236)
Q Consensus 245 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 272 (1236)
..|+||||+|+..|+.++|++|+++|++
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 198 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPS 198 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 8888888888888888888888888776
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=320.81 Aligned_cols=251 Identities=19% Similarity=0.192 Sum_probs=206.5
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
+|+||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~--------------------------- 54 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI--------------------------- 54 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------------
Confidence 58999999999999999999999999999999999999999999999999988
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++.+|..|.||||+|+..|+.++++.|++......
T Consensus 55 ----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------------------------- 96 (261)
T 2xai_A 55 ----LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---------------------------------- 96 (261)
T ss_dssp ----HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------------------------------
T ss_pred ----HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------------------------------
Confidence 999999999999999999999999999999998887532100
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~i 262 (1236)
....|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.++
T Consensus 97 ---------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 97 ---------------------------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp ---------------------------CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred ---------------------------CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHH
Confidence 00137899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhH
Q psy8898 263 CSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTL 342 (1236)
Q Consensus 263 v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~ 342 (1236)
+++|+++|++++. +..|.||
T Consensus 150 v~~Ll~~g~~~~~-~~~g~t~----------------------------------------------------------- 169 (261)
T 2xai_A 150 VKKLLESGADVNQ-GKGQDSP----------------------------------------------------------- 169 (261)
T ss_dssp HHHHHHHTCCTTC-CBTTBCH-----------------------------------------------------------
T ss_pred HHHHHHcCCCCCC-CCCCCCh-----------------------------------------------------------
Confidence 9999999999874 4433333
Q ss_pred HHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhC
Q psy8898 343 LIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSC 422 (1236)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~ 422 (1236)
||.|+..|+.+++++|++.
T Consensus 170 ------------------------------------------------------------Lh~A~~~~~~~~v~~Ll~~- 188 (261)
T 2xai_A 170 ------------------------------------------------------------LHAVARTASEELACLLMDF- 188 (261)
T ss_dssp ------------------------------------------------------------HHHHHHHTCHHHHHHHHHT-
T ss_pred ------------------------------------------------------------HHHHHHcCCHHHHHHHHHc-
Confidence 5556677788888888887
Q ss_pred CCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCC----CCCCccCCCChHHHHHhcCchHHHhh
Q psy8898 423 PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSK----DNATDKWGFTPLHEAAQKGRTQLSAL 490 (1236)
Q Consensus 423 ~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~----~~~~d~~g~t~L~~A~~~~~~~iv~~ 490 (1236)
+.+++.++.+| +||||+|+..+ +++++|++++..+... ...+|..|.||+|.|.+....+.++-
T Consensus 189 gad~~~~d~~g--~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 189 GADTQAKNAEG--KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp TCCTTCCCTTS--CCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHH
T ss_pred CCCCCCcCCCC--CChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHH
Confidence 77788777766 49999998654 5899999987654311 12456688899988887665554443
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.3e-34 Score=314.84 Aligned_cols=172 Identities=26% Similarity=0.324 Sum_probs=97.3
Q ss_pred CCccccCCCCcchhhHHhhcC-------------CHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHhCCCceEEeeeccc
Q psy8898 15 ASIHARDDGGLHPLHNACSFG-------------HADVVRLLLEADANPNT-RDNWNFTPLHEAAAKGKTDVCIGIYFAE 80 (1236)
Q Consensus 15 a~~n~~d~~g~t~L~~A~~~g-------------~~~iv~~Ll~~ga~~n~-~d~~g~t~L~~A~~~g~~~iv~~Ll~~~ 80 (1236)
.|+|.+|.+|+||||+||..| +.++|++|++.|++++. .|..|+||||+|+..|+.+++++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~----- 75 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR----- 75 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH-----
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHH-----
Confidence 478999999999999999988 89999999999998854 58899999999999999999988
Q ss_pred cCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy8898 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPS 160 (1236)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~ 160 (1236)
|+++|++++..+..|+||||+|+..|+.++++.|++......
T Consensus 76 --------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------ 117 (253)
T 1yyh_A 76 --------------------------LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL------------ 117 (253)
T ss_dssp --------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT------------
T ss_pred --------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc------------
Confidence 999999999888888887777777777777777665421000
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCC
Q psy8898 161 QYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANV 240 (1236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~ 240 (1236)
......|.||||+|+..|+.+++++|++.|+++
T Consensus 118 -----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 150 (253)
T 1yyh_A 118 -----------------------------------------------DARMHDGTTPLILAARLAVEGMLEDLINSHADV 150 (253)
T ss_dssp -----------------------------------------------TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred -----------------------------------------------cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence 000113667777777777777777777777777
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC
Q psy8898 241 NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276 (1236)
Q Consensus 241 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 276 (1236)
+.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 186 (253)
T 1yyh_A 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186 (253)
T ss_dssp TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 777777777777777777777777777776665543
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=313.62 Aligned_cols=183 Identities=23% Similarity=0.231 Sum_probs=150.8
Q ss_pred CCcHHHHHHHHHcC-----------CCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Q psy8898 1 YGRKDVVEYLLASG-----------ASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGK 69 (1236)
Q Consensus 1 ~G~~~~v~~Ll~~g-----------a~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~ 69 (1236)
+|+.+.+..++..+ -.++.+|.+|+||||+||..|+.++|++|+++|+++|..|..|+||||+|+..|+
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 104 (285)
T 3d9h_A 25 DGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104 (285)
T ss_dssp -----------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTC
T ss_pred cCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCc
Confidence 36655555554432 2357789999999999999999999999999999999999999999999999999
Q ss_pred CceEEeeeccccCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCC
Q psy8898 70 TDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPS 149 (1236)
Q Consensus 70 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~ 149 (1236)
.+++++ |+++|++++.++..|.||||+|+..|+.++++.|++......
T Consensus 105 ~~~v~~-------------------------------Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 152 (285)
T 3d9h_A 105 LSCVKI-------------------------------LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ- 152 (285)
T ss_dssp HHHHHH-------------------------------HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-
T ss_pred HHHHHH-------------------------------HHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-
Confidence 999988 999999999999999999999999999999998887531100
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHH
Q psy8898 150 CAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEV 229 (1236)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~i 229 (1236)
....|.||||+|+..|+.++
T Consensus 153 ------------------------------------------------------------~~~~g~t~L~~A~~~g~~~~ 172 (285)
T 3d9h_A 153 ------------------------------------------------------------PESDLASPIHEAARRGHVEC 172 (285)
T ss_dssp ------------------------------------------------------------CSCTTSCHHHHHHHHTCHHH
T ss_pred ------------------------------------------------------------CCCCCCCHHHHHHHcCCHHH
Confidence 00137899999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q psy8898 230 TEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275 (1236)
Q Consensus 230 v~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 275 (1236)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 173 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 218 (285)
T 3d9h_A 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218 (285)
T ss_dssp HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC
Confidence 9999999999999999999999999999999999999999988763
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.1e-33 Score=307.15 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=106.8
Q ss_pred HHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHH
Q psy8898 677 LEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756 (1236)
Q Consensus 677 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~i 756 (1236)
|.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.|+.++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~ 205 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV---NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 205 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHH
Confidence 334566778888888888877777777799999999987 78999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 757 v~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
|++|+++|++++.+|..|+|||++|+++|+.+++++|.+....
T Consensus 206 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999987543
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.6e-34 Score=335.14 Aligned_cols=240 Identities=19% Similarity=0.178 Sum_probs=159.8
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCCh
Q psy8898 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDL 514 (1236)
Q Consensus 435 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~ 514 (1236)
|+||||+|+..|+.++|++|+++|++++ ..|..|+||||+|+..|+.+++++|++.+...+.
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------- 81 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPT----IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-------------- 81 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT----CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcc----ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--------------
Confidence 4577888877778888888887777774 3444777777777777777776666544331110
Q ss_pred HHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhC----CCCCccCCCCCCCHHHHHHHHHHH
Q psy8898 515 TKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKH----GANVNVADLWKFTPLHEAAAKALL 590 (1236)
Q Consensus 515 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~----g~~v~~~d~~g~tpL~~a~~~~Ll 590 (1236)
. .|+||||+|+..|+.+++++|+++ |++++........ ..
T Consensus 82 ----------------~-----------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~---------~~ 125 (364)
T 3ljn_A 82 ----------------W-----------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE---------RE 125 (364)
T ss_dssp ----------------B-----------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC---------CC
T ss_pred ----------------c-----------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch---------Hh
Confidence 0 166778888888888888888877 5554430000000 00
Q ss_pred hcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhh
Q psy8898 591 QHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDE 670 (1236)
Q Consensus 591 ~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1236)
....+++..|..|.||||+|
T Consensus 126 ~~~~~~~~~~~~g~t~L~~A------------------------------------------------------------ 145 (364)
T 3ljn_A 126 VNEIGSHVKHCKGQTALHWC------------------------------------------------------------ 145 (364)
T ss_dssp EEEETTEEEEESCCCHHHHH------------------------------------------------------------
T ss_pred hhhhccccCCCCCCCHHHHH------------------------------------------------------------
Confidence 01123344666677766665
Q ss_pred ccccHHHHHHHcC--CHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCC-----CCCCCCCCch
Q psy8898 671 FKGHCLLEACRQG--DPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH-----LNEKNKELLA 743 (1236)
Q Consensus 671 ~~~~~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gad-----in~~d~~G~T 743 (1236)
+..| +.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++ +|.+|..|+|
T Consensus 146 ---------~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 146 ---------VGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF---RNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp ---------HHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred ---------HHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---CCHHHHHHHHhcccccccccccccCCCCCc
Confidence 3455 66777777777666666666677777777776 677777777777777 7777777777
Q ss_pred HHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy8898 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800 (1236)
Q Consensus 744 ~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~ 800 (1236)
|||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence 777777777777777777777777777777777777777777777777777777654
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-33 Score=314.87 Aligned_cols=263 Identities=21% Similarity=0.173 Sum_probs=179.4
Q ss_pred ccccCCCCcchhhHHhhcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccC
Q psy8898 17 IHARDDGGLHPLHNACSFGHADVVRLLLEADAN---PNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 17 ~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~---~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
++.+|.+|+||||+||..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~------------------ 63 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK------------------ 63 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHH------------------
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHH------------------
Confidence 467899999999999999999999999999998 88999999999999999999999988
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++.++..|+||||+|+..|+.++++.|++..............
T Consensus 64 -------------Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~----------------- 113 (282)
T 1oy3_D 64 -------------LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL----------------- 113 (282)
T ss_dssp -------------HHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------
T ss_pred -------------HHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHh-----------------
Confidence 99999999999999999999999999999999999765322111100000
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHH-HHHHHHhcCCCCCCCCCCCCcHHH
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFE-VTEMLIKAGANVNAMDLWQFTPLH 252 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~-iv~~Ll~~ga~~n~~d~~g~TpL~ 252 (1236)
..........+.++++.++..+... ....+...+++++..|..|+||||
T Consensus 114 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 114 ------------------------------TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp ------------------------------------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred ------------------------------hcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 0000011113556666666654433 334444567778888888888888
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCC-CCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCC
Q psy8898 253 EAASKSRLEVCSLLLSEGADPTLHNCH-SKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHP 331 (1236)
Q Consensus 253 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~ 331 (1236)
+|+..|+.++|++|+++|++++..+.. |.||
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp------------------------------------------------ 195 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP------------------------------------------------ 195 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH------------------------------------------------
Confidence 888888888888888888887766532 3333
Q ss_pred CCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCC
Q psy8898 332 YTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGD 411 (1236)
Q Consensus 332 ~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~ 411 (1236)
||.|+..|+
T Consensus 196 -----------------------------------------------------------------------L~~A~~~~~ 204 (282)
T 1oy3_D 196 -----------------------------------------------------------------------LHLAVEAQA 204 (282)
T ss_dssp -----------------------------------------------------------------------HHHHHHTTC
T ss_pred -----------------------------------------------------------------------HHHHHHcCC
Confidence 455566677
Q ss_pred HHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcC
Q psy8898 412 MTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483 (1236)
Q Consensus 412 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~ 483 (1236)
.+++++|++. +.+++.++..| +||||+|+..|+.+++++|+++|++++ .+|..|.|||++|....
T Consensus 205 ~~~v~~Ll~~-gad~~~~d~~g--~tpL~~A~~~~~~~~v~~Ll~~ga~~~----~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 205 ASVLELLLKA-GADPTARMYGG--RTPLGSALLRPNPILARLLRAHGAPEP----EDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHTSSCHHHHHHHHHTTCCCC----CCC--------------
T ss_pred HHHHHHHHHc-CCCCcccccCC--CCHHHHHHHcCCcHHHHHHHHcCCCcC----cCCCcccccccccCCcc
Confidence 7777777776 67777776655 499999999999999999999999995 45559999999998754
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-32 Score=297.95 Aligned_cols=170 Identities=25% Similarity=0.298 Sum_probs=125.4
Q ss_pred CCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCC
Q psy8898 15 ASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGG 94 (1236)
Q Consensus 15 a~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 94 (1236)
.+++.+|.+|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------- 62 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY------------------- 62 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH-------------------
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHH-------------------
Confidence 4788899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q psy8898 95 GTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLP 174 (1236)
Q Consensus 95 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1236)
|+++|++++..+..|.||||+|+..|+.++++.|++......
T Consensus 63 ------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-------------------------- 104 (237)
T 3b7b_A 63 ------------LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-------------------------- 104 (237)
T ss_dssp ------------HHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT--------------------------
T ss_pred ------------HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--------------------------
Confidence 999999999887777776666666666666666654321000
Q ss_pred CCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy8898 175 PPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEA 254 (1236)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A 254 (1236)
......|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus 105 ---------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 151 (237)
T 3b7b_A 105 ---------------------------------NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA 151 (237)
T ss_dssp ---------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ---------------------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence 00001255666666666666666666666666666666666666666
Q ss_pred HHcCcHHHHHHHHhCCCCCC
Q psy8898 255 ASKSRLEVCSLLLSEGADPT 274 (1236)
Q Consensus 255 ~~~g~~~iv~~Ll~~ga~~~ 274 (1236)
+..|+.+++++|+++|++++
T Consensus 152 ~~~~~~~~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 152 AFSGCVDIAEILLAAKCDLH 171 (237)
T ss_dssp HHHCCHHHHHHHHTTTCCTT
T ss_pred HHCCCHHHHHHHHHcCCCCC
Confidence 66666666666666655544
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.7e-33 Score=301.90 Aligned_cols=172 Identities=26% Similarity=0.313 Sum_probs=131.8
Q ss_pred ccccCCCCcchhhHHhhcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCcccccccccc
Q psy8898 17 IHARDDGGLHPLHNACSFGHADVVRLLLE----ADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGI 92 (1236)
Q Consensus 17 ~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 92 (1236)
++.+|.+|+||||+||..|+.++|++|++ .|++++..|..|.||||+|+..|+.+++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------- 64 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----------------- 64 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH-----------------
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH-----------------
Confidence 45689999999999999999999999997 899999999999999999999999999988
Q ss_pred CCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCC
Q psy8898 93 GGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVS 172 (1236)
Q Consensus 93 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1236)
|+++|++++..+..|.||||+|+..++.++++.+++........
T Consensus 65 --------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~---------------------- 108 (241)
T 1k1a_A 65 --------------LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD---------------------- 108 (241)
T ss_dssp --------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC----------------------
T ss_pred --------------HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----------------------
Confidence 99999999998888888888888777777777777653210000
Q ss_pred CCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCC-CCCCcHH
Q psy8898 173 LPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMD-LWQFTPL 251 (1236)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d-~~g~TpL 251 (1236)
.......|.||||+|+..|+.+++++|++.|++++..+ ..|.|||
T Consensus 109 ----------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 109 ----------------------------------LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp ----------------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred ----------------------------------ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence 00011136677777777777777777777777777776 6677777
Q ss_pred HHHHHcCcHHHHHHHHhCCCCCCC
Q psy8898 252 HEAASKSRLEVCSLLLSEGADPTL 275 (1236)
Q Consensus 252 ~~A~~~g~~~iv~~Ll~~ga~~~~ 275 (1236)
|+|+..|+.+++++|+++|++++.
T Consensus 155 ~~A~~~~~~~~v~~Ll~~g~~~~~ 178 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQHGANVNA 178 (241)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 777777777777777777766544
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-32 Score=297.38 Aligned_cols=225 Identities=24% Similarity=0.264 Sum_probs=177.2
Q ss_pred hhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHH
Q psy8898 399 LESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHE 478 (1236)
Q Consensus 399 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~ 478 (1236)
..++|+.|+..|+++.+++|++..+..++..+.++ +||||+|+..|+.+++++|+++|++++..+. .
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~------- 72 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDD----A------- 72 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----T-------
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCC--CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC----C-------
Confidence 45678888888888888888887666566655554 4888888888888888888888888744332 3
Q ss_pred HHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHH
Q psy8898 479 AAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYE 558 (1236)
Q Consensus 479 A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~ 558 (1236)
|+||||+|+..|+.+
T Consensus 73 -----------------------------------------------------------------g~t~L~~A~~~~~~~ 87 (231)
T 3aji_A 73 -----------------------------------------------------------------GWSPLHIAASAGXDE 87 (231)
T ss_dssp -----------------------------------------------------------------SCCHHHHHHHHTCHH
T ss_pred -----------------------------------------------------------------CCCHHHHHHHcCHHH
Confidence 455666666666677
Q ss_pred HHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCc
Q psy8898 559 VTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638 (1236)
Q Consensus 559 iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 638 (1236)
++++|+++|++++..|..|.||
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~---------------------------------------------------------- 109 (231)
T 3aji_A 88 IVKALLVKGAHVNAVNQNGCTP---------------------------------------------------------- 109 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCH----------------------------------------------------------
T ss_pred HHHHHHHcCCCCCCCCCCCCCH----------------------------------------------------------
Confidence 7777777666655444333322
Q ss_pred ccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCC
Q psy8898 639 HRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYP 718 (1236)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 718 (1236)
||.|+..|+.+++++|++.+......+..|.||||+|+..
T Consensus 110 -------------------------------------L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--- 149 (231)
T 3aji_A 110 -------------------------------------LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK--- 149 (231)
T ss_dssp -------------------------------------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---
T ss_pred -------------------------------------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---
Confidence 2233455666677777776665555556688888888886
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8898 719 KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798 (1236)
Q Consensus 719 ~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga 798 (1236)
++.+++++|+++|++++.+|..|+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus 150 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy8898 799 D 799 (1236)
Q Consensus 799 ~ 799 (1236)
+
T Consensus 230 ~ 230 (231)
T 3aji_A 230 S 230 (231)
T ss_dssp C
T ss_pred c
Confidence 5
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.9e-33 Score=300.37 Aligned_cols=124 Identities=23% Similarity=0.222 Sum_probs=107.6
Q ss_pred ccHHHHHHHcCCHHHHHHhhccCCcccCCC-CCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHh
Q psy8898 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHP-YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADL 751 (1236)
Q Consensus 673 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~ 751 (1236)
.||||.|+..|+.+++++|++.+......+ ..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.
T Consensus 117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 193 (241)
T 1k1a_A 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN---NSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193 (241)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 344455577889999999999987666666 6699999999997 889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 752 GHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 752 g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
|+.+++++|+++|++++.+|..|+|||++|+..|+.++++.|++++++
T Consensus 194 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS 241 (241)
T 1k1a_A 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred CCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence 999999999999999999999999999999999999999999998863
No 24
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.1e-33 Score=310.94 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=156.0
Q ss_pred CcHHHHHHHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeecccc
Q psy8898 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEH 81 (1236)
Q Consensus 2 G~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 81 (1236)
...+++++|.+. ++|.+|.+|+||||+||..|+.++|++|+++|++++..| |+||||+|+..|+.+++++
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~------ 80 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKI------ 80 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHH------
T ss_pred CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHH------
Confidence 345666666655 688999999999999999999999999999999999985 9999999999999999988
Q ss_pred CccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q psy8898 82 SSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQ 161 (1236)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 161 (1236)
|+++|++++.++..|+||||+|+..|+.++++.|++..
T Consensus 81 -------------------------Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------- 118 (285)
T 3kea_A 81 -------------------------LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN----------------- 118 (285)
T ss_dssp -------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----------------
T ss_pred -------------------------HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----------------
Confidence 99999999999999999999999999888888877652
Q ss_pred ccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCcccc----CC-chHHHHHHhcCcHHHHHHHHhc
Q psy8898 162 YSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVA----LG-LVPLHNACSYGHFEVTEMLIKA 236 (1236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~----~g-~T~L~~Aa~~g~~~iv~~Ll~~ 236 (1236)
++++ .| .||||+|+..|+.+++++|+++
T Consensus 119 -----------------------------------------------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 119 -----------------------------------------------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp -----------------------------------------------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT
T ss_pred -----------------------------------------------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 2222 35 6899999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCc
Q psy8898 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSA 283 (1236)
Q Consensus 237 ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 283 (1236)
|+++... ..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 152 g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~ 197 (285)
T 3kea_A 152 IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197 (285)
T ss_dssp SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT
T ss_pred CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh
Confidence 8876332 278899999999999999999999999988888776665
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.1e-32 Score=292.81 Aligned_cols=226 Identities=25% Similarity=0.286 Sum_probs=180.7
Q ss_pred ccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHH
Q psy8898 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLREL 505 (1236)
Q Consensus 426 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L 505 (1236)
++..+.+ |.||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|++.+...+
T Consensus 4 ~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------ 71 (237)
T 3b7b_A 4 FKMEHQN--KRSPLHAAAEAGHVDICHMLVQAGANIDT----CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------ 71 (237)
T ss_dssp CCCSSCC--SCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC------
T ss_pred cccccCC--CCCHHHHHHHcCcHHHHHHHHHcCCCcCc----cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC------
Confidence 3444444 45999999999999999999999999854 44578888888888777777777655433221
Q ss_pred HHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCC-CCCccCCCCCCCHHHHH
Q psy8898 506 FEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG-ANVNVADLWKFTPLHEA 584 (1236)
Q Consensus 506 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~v~~~d~~g~tpL~~a 584 (1236)
..+. .|.||||+|+..|+.+++++|+++| ++++..+.
T Consensus 72 ----------------------~~~~-----------~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------- 109 (237)
T 3b7b_A 72 ----------------------PKDA-----------EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD--------- 109 (237)
T ss_dssp ----------------------CCCT-----------TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT---------
T ss_pred ----------------------CCCC-----------CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC---------
Confidence 1111 2778888888888888888888876 55544433
Q ss_pred HHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCccccccccccccc
Q psy8898 585 AAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFM 664 (1236)
Q Consensus 585 ~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1236)
.|.|
T Consensus 110 -----------------~g~t----------------------------------------------------------- 113 (237)
T 3b7b_A 110 -----------------GGWT----------------------------------------------------------- 113 (237)
T ss_dssp -----------------TSCC-----------------------------------------------------------
T ss_pred -----------------CCCC-----------------------------------------------------------
Confidence 3333
Q ss_pred ccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchH
Q psy8898 665 PRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAP 744 (1236)
Q Consensus 665 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~ 744 (1236)
||+.|+..|+.+++++|++.+......+..|.||||+|+.. ++.+++++|+++|++++.+|..|+||
T Consensus 114 ----------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~ 180 (237)
T 3b7b_A 114 ----------PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS---GCVDIAEILLAAKCDLHAVNIHGDSP 180 (237)
T ss_dssp ----------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---CCHHHHHHHHTTTCCTTCCCTTCCCH
T ss_pred ----------HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC---CCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34444667888999999998887777777799999999997 78999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8898 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794 (1236)
Q Consensus 745 Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll 794 (1236)
||+|++.|+.+++++|+++|++++.+|.+|+||||+|+.+++.+.+..|+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986655544
No 26
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.8e-33 Score=307.28 Aligned_cols=258 Identities=21% Similarity=0.211 Sum_probs=181.8
Q ss_pred hCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHH
Q psy8898 408 KGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQL 487 (1236)
Q Consensus 408 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~i 487 (1236)
+..+.+.+..++... .++..+.+| +||||+|+..|+.++|++|+++|++++.. +|+||||+|+..|+.++
T Consensus 8 ~~~~~~~v~~lL~~~--~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK--DTFKADVHG--HSASYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGCCHHHHHHHHHST--TTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTGGGSCC------TTCCHHHHHTTSSSCHH
T ss_pred HhcCHHHHHHHHHhC--CCCccCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCC------CCCCHHHHHHHcCCHHH
Confidence 445556666666552 466666555 59999999999999999999999988544 25565555555544444
Q ss_pred HhhcCCCCCCCCCchhHHHHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCC
Q psy8898 488 SALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG 567 (1236)
Q Consensus 488 v~~L~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 567 (1236)
+++|++.+...+ ..+. .|+||||+|+..|+.+++++|+++|
T Consensus 78 v~~Ll~~ga~~~----------------------------~~d~-----------~g~t~L~~A~~~g~~~~v~~Ll~~g 118 (285)
T 3kea_A 78 VKILLFSGLDDS----------------------------QFDD-----------KGNTALYYAVDSGNMQTVKLFVKKN 118 (285)
T ss_dssp HHHHHHTTCCTT----------------------------CCCT-----------TSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCCCC----------------------------CcCC-----------CCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 444433222111 1111 1445555555555555555555544
Q ss_pred CCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCC-CChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCC
Q psy8898 568 ANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDG-KTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLG 646 (1236)
Q Consensus 568 ~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g-~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 646 (1236)
+ +++..+..| .|||
T Consensus 119 a--------------------------~~~~~~~~g~~t~L--------------------------------------- 133 (285)
T 3kea_A 119 W--------------------------RLMFYGKTGWKTSF--------------------------------------- 133 (285)
T ss_dssp G--------------------------GGGGCSSSGGGSHH---------------------------------------
T ss_pred C--------------------------CCCccCCCCCCCHH---------------------------------------
Confidence 4 444444444 3444
Q ss_pred CCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHH
Q psy8898 647 TTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVES 726 (1236)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~ 726 (1236)
|.|+..|+.+++++|++.+...... ..|+||||+|+.. ++.+++++
T Consensus 134 ------------------------------~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~---g~~~~v~~ 179 (285)
T 3kea_A 134 ------------------------------YHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN---GHVDMMIL 179 (285)
T ss_dssp ------------------------------HHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT---TCHHHHHH
T ss_pred ------------------------------HHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc---ChHHHHHH
Confidence 4446788999999999998755332 2699999999997 89999999
Q ss_pred HHHcCCCCCCCCCCCchH-HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q psy8898 727 LIRKGAHLNEKNKELLAP-IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSL 805 (1236)
Q Consensus 727 Ll~~gadin~~d~~G~T~-Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 805 (1236)
|+++|++++.+|..|+|| ||+|++.|+.++|++|+++|++++.+| +.|+..|+.+++++|+++|+++...+.
T Consensus 180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCccc
Confidence 999999999999999998 999999999999999999999999988 367889999999999999998877654
Q ss_pred cchhHHHhhhchHHH
Q psy8898 806 LVIFSCSTNLGLKHL 820 (1236)
Q Consensus 806 ~~~~~~~~~~~~~~~ 820 (1236)
...+.........++
T Consensus 253 ~~~~~~~~~~~~~~i 267 (285)
T 3kea_A 253 TKDLDIVKNNKLDEI 267 (285)
T ss_dssp TTTCHHHHTCSHHHH
T ss_pred cchHHHHhhhhHHHH
Confidence 433333344333333
No 27
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=1.8e-32 Score=305.89 Aligned_cols=120 Identities=18% Similarity=0.068 Sum_probs=87.5
Q ss_pred cccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCC-CCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCc
Q psy8898 664 MPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPY-TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELL 742 (1236)
Q Consensus 664 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~ 742 (1236)
+++.++..|.||||.|+..|+.+++++|++.+......+. .|+||||+|+.. ++.+++++|+++|++++.+|..|+
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~ 226 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA---QAASVLELLLKAGADPTARMYGGR 226 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCC
Confidence 4556677778888888888888888888888776665554 388888888886 788888888888888888888888
Q ss_pred hHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCC
Q psy8898 743 APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK 786 (1236)
Q Consensus 743 T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~ 786 (1236)
||||+|++.|+.++|++|+++|++++.+|..|.|||++|.....
T Consensus 227 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 227 TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred CHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 88888888888888888888888888888888888888876553
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.2e-32 Score=300.07 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=46.7
Q ss_pred cccCCCCcchhhHHhhcCCHHHHHHHHHCCCC--------CCCCCCCCCCHHHHHHHhCCCc-eEEeeeccccCcccccc
Q psy8898 18 HARDDGGLHPLHNACSFGHADVVRLLLEADAN--------PNTRDNWNFTPLHEAAAKGKTD-VCIGIYFAEHSSKSNQY 88 (1236)
Q Consensus 18 n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~--------~n~~d~~g~t~L~~A~~~g~~~-iv~~Ll~~~~~~~~~~~ 88 (1236)
..+|..+.|||+.||..|+.++|++|++.|++ ++..|..|.||||+|+..++.+ ++++
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~------------- 71 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAK------------- 71 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHH-------------
Confidence 35678889999999999999999999999875 4677888999999999888764 6666
Q ss_pred ccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHH
Q psy8898 89 VYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAM 141 (1236)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~ 141 (1236)
|+++|++++.+|.+|+||||+|+..|+.++|+.|+
T Consensus 72 ------------------Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll 106 (269)
T 4b93_B 72 ------------------VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLL 106 (269)
T ss_dssp ---------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHH
T ss_pred ------------------HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999988777666555555444444444333
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=4.2e-32 Score=291.06 Aligned_cols=214 Identities=27% Similarity=0.325 Sum_probs=193.2
Q ss_pred CcHHHHHHHHHcCCCcccc-CCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccc
Q psy8898 2 GRKDVVEYLLASGASIHAR-DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80 (1236)
Q Consensus 2 G~~~~v~~Ll~~ga~~n~~-d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~ 80 (1236)
|+.++|++|+++|++++.. |.+|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----- 76 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI----- 76 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-----
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH-----
Confidence 7899999999999999876 8999999999999999999999999999999999999999999999999999988
Q ss_pred cCccccccccccCCCCCCCCCcchhHHHhcCC-CCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy8898 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGA-DPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPP 159 (1236)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~ 159 (1236)
|+++|+ +++..+..|.||||+|+..++.++++.|++......
T Consensus 77 --------------------------Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------- 119 (223)
T 2f8y_A 77 --------------------------LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN----------- 119 (223)
T ss_dssp --------------------------HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----------
T ss_pred --------------------------HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-----------
Confidence 999987 899999999999999999999999999887531100
Q ss_pred CcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCC
Q psy8898 160 SQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGAN 239 (1236)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~ 239 (1236)
.....|.||||+|+..|+.+++++|+++|++
T Consensus 120 -------------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (223)
T 2f8y_A 120 -------------------------------------------------AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150 (223)
T ss_dssp -------------------------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 0011489999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHH
Q psy8898 240 VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKK 319 (1236)
Q Consensus 240 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ 319 (1236)
++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|| ++.|++.++.+++++
T Consensus 151 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~---------------------l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP---------------------RDIAQERMHHDIVRL 209 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH---------------------HHHHHHTTCHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH---------------------HHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999988888 677899999999999
Q ss_pred hhhccccc
Q psy8898 320 FLTSDVVN 327 (1236)
Q Consensus 320 ll~~~~~~ 327 (1236)
|++.+...
T Consensus 210 L~~~g~~~ 217 (223)
T 2f8y_A 210 LDEYNLVR 217 (223)
T ss_dssp HHHTTCSS
T ss_pred HHHcCCCc
Confidence 99887643
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=300.52 Aligned_cols=219 Identities=26% Similarity=0.302 Sum_probs=164.0
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCCC--------CccCCCCCCCHHHHHH--------HHHHHhcCCCCcccCCCCCChh
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGAN--------VNVADLWKFTPLHEAA--------AKALLQHGADINLKNTDGKTAL 607 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~~--------v~~~d~~g~tpL~~a~--------~~~Ll~~g~d~~~~~~~g~t~L 607 (1236)
+.+||+.||..|+.++|++|+++|++ ++..+..|.|||+.|+ +++|++.|+++|.+|.+|+|||
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL 90 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL 90 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 67899999999999999999999875 5667888999999886 4589999999999999999999
Q ss_pred hhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHH
Q psy8898 608 DLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSR 687 (1236)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~ 687 (1236)
|+|+ ..++.+++++|.. ...+++.++..|.||++.|+..++.++
T Consensus 91 h~A~------~~g~~~~v~~Ll~------------------------------~~a~~~~~~~~g~t~l~~a~~~~~~~~ 134 (269)
T 4b93_B 91 HVAA------LHGRADLIPLLLK------------------------------HGANAGARNADQAVPLHLACQQGHFQV 134 (269)
T ss_dssp HHHH------HTTCTTHHHHHHH------------------------------TTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHH------HcCcHHHHHHHHh------------------------------cCCCcCccCCCCCCccccccccChHHH
Confidence 9997 6678888887765 123455677788999999999999999
Q ss_pred HHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCc
Q psy8898 688 VKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKV 767 (1236)
Q Consensus 688 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~ 767 (1236)
+++|++.+......+..|+||||+|+.. |+.++|++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|+|+
T Consensus 135 ~~~Ll~~g~~~n~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~ 211 (269)
T 4b93_B 135 VKCLLDSNAKPNKKDLSGNTPLIYACSG---GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211 (269)
T ss_dssp HHHHHHTTCCSCCCCTTCCCHHHHHHHT---TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 9999999887777778899999999987 7889999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCC
Q psy8898 768 NLVDVLGQTALHRTARDDK-TQAVRVLLSHNADTS 801 (1236)
Q Consensus 768 n~~d~~G~tpL~~A~~~~~-~~iv~~Ll~~ga~~~ 801 (1236)
|.+|.+|+||||+|+++++ .+++++|.+.++..+
T Consensus 212 ~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 212 QVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp CCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred CCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 9999999999999988776 455556666655443
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=3.9e-32 Score=305.90 Aligned_cols=220 Identities=33% Similarity=0.402 Sum_probs=188.9
Q ss_pred CCcHHHHHHHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccc
Q psy8898 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80 (1236)
Q Consensus 1 ~G~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~ 80 (1236)
+|+.++|++|+++|+++|.+|.+|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 50 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~----- 124 (299)
T 1s70_B 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY----- 124 (299)
T ss_dssp HTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH-----
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH-----
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy8898 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPS 160 (1236)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~ 160 (1236)
|+++|++++..+..|.||||+|+..++.++++.++............
T Consensus 125 --------------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~------- 171 (299)
T 1s70_B 125 --------------------------LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK------- 171 (299)
T ss_dssp --------------------------HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-------
T ss_pred --------------------------HHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhh-------
Confidence 99999999999999999999999999999999888653110000000
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccc-----cCCchHHHHHHhcCcHHHHHHHHh
Q psy8898 161 QYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAV-----ALGLVPLHNACSYGHFEVTEMLIK 235 (1236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~-----~~g~T~L~~Aa~~g~~~iv~~Ll~ 235 (1236)
. ...+.... +..++..+... ..|.||||+||..|+.++|++|++
T Consensus 172 ---------------------~---------~~~~~~~~-~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 220 (299)
T 1s70_B 172 ---------------------E---------EERIMLRD-ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220 (299)
T ss_dssp ---------------------H---------HHHHHHHH-HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred ---------------------h---------hhhHHHHH-HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 0 00111111 22233333222 269999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccc
Q psy8898 236 AGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPT 289 (1236)
Q Consensus 236 ~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~ 289 (1236)
+|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|..
T Consensus 221 ~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999853
No 32
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-31 Score=301.28 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=80.5
Q ss_pred CCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q psy8898 701 HPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780 (1236)
Q Consensus 701 ~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~ 780 (1236)
.+..|.||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+||||+
T Consensus 195 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~ 271 (299)
T 1s70_B 195 HAKSGGTALHVAAAK---GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271 (299)
T ss_dssp CTTTCCCHHHHHHHH---TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred hcCCCCCHHHHHHHC---CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 334588999999987 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHh
Q psy8898 781 TARDDKTQAVRVLLS 795 (1236)
Q Consensus 781 A~~~~~~~iv~~Ll~ 795 (1236)
|++.....+.+++-+
T Consensus 272 A~~~~~~~l~~l~~~ 286 (299)
T 1s70_B 272 ADEDILGYLEELQKK 286 (299)
T ss_dssp CCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 977554444444433
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=284.79 Aligned_cols=230 Identities=22% Similarity=0.198 Sum_probs=177.7
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcCchHHHhhcCCCCCCCCCchhHHHHHHhcCC
Q psy8898 434 RHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGD 513 (1236)
Q Consensus 434 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~L~~A~~~g~ 513 (1236)
.+.|||+.|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++.+.....
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------------- 70 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVEAGYDVR----QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ------------- 70 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------
T ss_pred ccchHHHHHHHcCChHHHHHHHHcCCCcC----CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh-------------
Confidence 34578888888888888888888888774 3444777777777777777666666544332210
Q ss_pred hHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcC
Q psy8898 514 LTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHG 593 (1236)
Q Consensus 514 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g 593 (1236)
.. .. .|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 71 ---------------~~-~~---------~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~------------- 112 (240)
T 3eu9_A 71 ---------------LG-GD---------LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC------------- 112 (240)
T ss_dssp ---------------CB-TT---------TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-------------
T ss_pred ---------------hc-CC---------cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-------------
Confidence 00 00 26788999999999999999998887776555444333
Q ss_pred CCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccc
Q psy8898 594 ADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKG 673 (1236)
Q Consensus 594 ~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1236)
T Consensus 113 -------------------------------------------------------------------------------- 112 (240)
T 3eu9_A 113 -------------------------------------------------------------------------------- 112 (240)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCC-CCchHHHHHHHhC
Q psy8898 674 HCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK-ELLAPIHLAADLG 752 (1236)
Q Consensus 674 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~-~G~T~Lh~A~~~g 752 (1236)
|+.|+..|+.+++++|++.+......+..|.||||+|+.. .+..+++++|++.|++++..+. .|+||||+|++.|
T Consensus 113 --l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 113 --IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR--THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp --HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred --HHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh--CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence 3344567778888888888777666677788999999864 1347899999999999999997 9999999999999
Q ss_pred CHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q psy8898 753 HLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802 (1236)
Q Consensus 753 ~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 802 (1236)
+.++|++|+++|++++.+|..|+|||++|++.|+.+++++|++++++...
T Consensus 189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 99999999999999999999999999999999999999999999987654
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=285.37 Aligned_cols=145 Identities=26% Similarity=0.296 Sum_probs=118.7
Q ss_pred CccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCC
Q psy8898 16 SIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGG 95 (1236)
Q Consensus 16 ~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 95 (1236)
+++..|..|.|||+.|+..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------------- 60 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY-------------------- 60 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH--------------------
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH--------------------
Confidence 356778999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q psy8898 96 TGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPP 175 (1236)
Q Consensus 96 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1236)
|+++|++++..+..
T Consensus 61 -----------Ll~~~~~~~~~~~~------------------------------------------------------- 74 (240)
T 3eu9_A 61 -----------YISKGAIVDQLGGD------------------------------------------------------- 74 (240)
T ss_dssp -----------HHHTTCCTTCCBTT-------------------------------------------------------
T ss_pred -----------HHHcCCcchhhcCC-------------------------------------------------------
Confidence 99999887643221
Q ss_pred CCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy8898 176 PAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAA 255 (1236)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~ 255 (1236)
.|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus 75 -------------------------------------~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 117 (240)
T 3eu9_A 75 -------------------------------------LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117 (240)
T ss_dssp -------------------------------------TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred -------------------------------------cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 1556777777777777777777777777777777777777777
Q ss_pred HcCcHHHHHHHHhCCCCCCCCCCCCCCc
Q psy8898 256 SKSRLEVCSLLLSEGADPTLHNCHSKSA 283 (1236)
Q Consensus 256 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 283 (1236)
..|+.+++++|+++|++++..+..|.||
T Consensus 118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 145 (240)
T 3eu9_A 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTP 145 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence 7777777777777777777776666665
No 35
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=3.8e-31 Score=285.35 Aligned_cols=166 Identities=25% Similarity=0.295 Sum_probs=114.3
Q ss_pred CCCcchhhHHhhcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCC
Q psy8898 22 DGGLHPLHNACSFGHADVVRLLLEADA-NPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100 (1236)
Q Consensus 22 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 100 (1236)
..+.||||.||..|+.++|+.|++.+. .++..|..|.||||+|+..|+.+++++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~------------------------- 58 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------------------- 58 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHH-------------------------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHH-------------------------
Confidence 457899999999999999999998765 478889999999999999999999988
Q ss_pred CcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccC
Q psy8898 101 HKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180 (1236)
Q Consensus 101 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1236)
|+++|++++..+..|+||||+|+..|+.++++.|++......
T Consensus 59 ------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------------------------- 100 (231)
T 3aji_A 59 ------LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-------------------------------- 100 (231)
T ss_dssp ------HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--------------------------------
T ss_pred ------HHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC--------------------------------
Confidence 999999999887777666666666665555555554321000
Q ss_pred CCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q psy8898 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260 (1236)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~ 260 (1236)
.....|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.
T Consensus 101 ----------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 101 ----------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp ----------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred ----------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 0001255556666666666666666665555555555556666666666666
Q ss_pred HHHHHHHhCCCCCCCCCC
Q psy8898 261 EVCSLLLSEGADPTLHNC 278 (1236)
Q Consensus 261 ~iv~~Ll~~ga~~~~~~~ 278 (1236)
+++++|+++|++++.+|.
T Consensus 153 ~~v~~Ll~~g~~~~~~~~ 170 (231)
T 3aji_A 153 KMVHILLFYKASTNIQDT 170 (231)
T ss_dssp HHHHHHHHTTCCSCCCCT
T ss_pred HHHHHHHhcCCCccccCC
Confidence 666666655555554443
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.3e-30 Score=277.48 Aligned_cols=187 Identities=25% Similarity=0.290 Sum_probs=168.6
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHH-------HHHHHhcCC-CCcccCCCCCChhhhhcccCc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGA-DINLKNTDGKTALDLAVPCTR 615 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~-------~~~Ll~~g~-d~~~~~~~g~t~L~~a~~~~~ 615 (1236)
|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+ +++|++.+. +++..+..|.||||
T Consensus 25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~------- 97 (223)
T 2f8y_A 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI------- 97 (223)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH-------
T ss_pred CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH-------
Confidence 889999999999999999999999999999999999999887 467777765 66666665555554
Q ss_pred ccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccC
Q psy8898 616 AVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSD 695 (1236)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~ 695 (1236)
.|+..|+.+++++|++.+
T Consensus 98 --------------------------------------------------------------~A~~~~~~~~~~~Ll~~g 115 (223)
T 2f8y_A 98 --------------------------------------------------------------LAARLAVEGMLEDLINSH 115 (223)
T ss_dssp --------------------------------------------------------------HHHHHTCHHHHHHHHHTT
T ss_pred --------------------------------------------------------------HHHHhCcHHHHHHHHHcC
Confidence 557789999999999998
Q ss_pred CcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCC
Q psy8898 696 VVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ 775 (1236)
Q Consensus 696 ~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~ 775 (1236)
......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.|+.+++++|+++|++++.+|..|.
T Consensus 116 ~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 192 (223)
T 2f8y_A 116 ADVNAVDDLGKSALHWAAAV---NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 192 (223)
T ss_dssp CCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCcCcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCC
Confidence 87777777899999999997 889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCc
Q psy8898 776 TALHRTARDDKTQAVRVLLSHNADTSI 802 (1236)
Q Consensus 776 tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 802 (1236)
|||++|++.++.+++++|+++|+..+.
T Consensus 193 t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 193 LPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred CHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 999999999999999999999987653
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.4e-32 Score=310.18 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCC
Q psy8898 695 DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLG 774 (1236)
Q Consensus 695 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G 774 (1236)
+......+..|+||||.|+. +++|+++ ++|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|
T Consensus 248 g~~~~~~~~~g~t~L~~a~~---------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G 316 (327)
T 1sw6_A 248 ESKPNDKNGERKDSILENLD---------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316 (327)
T ss_dssp ------------CHHHHHCS---------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCcccccccCCChhHHHHH---------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 44455556679999999984 8899998 688999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcC
Q psy8898 775 QTALHRTARDD 785 (1236)
Q Consensus 775 ~tpL~~A~~~~ 785 (1236)
+||||+|+++|
T Consensus 317 ~TpL~~A~~~g 327 (327)
T 1sw6_A 317 LRPVDFGAGLE 327 (327)
T ss_dssp CCGGGGTCC--
T ss_pred CCHHHHHHhcC
Confidence 99999998765
No 38
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.9e-30 Score=279.25 Aligned_cols=211 Identities=25% Similarity=0.297 Sum_probs=167.6
Q ss_pred CcchhhHHhhcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEADANPN-TRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~ga~~n-~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
|+||||+||..|+.++|++|++.|++++ ..|..|.||||+|+..|+.+++++
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------------------------- 54 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF--------------------------- 54 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHH---------------------------
Confidence 7899999999999999999999998765 489999999999999999999988
Q ss_pred chhHHHhcCCCCCC---cccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcc
Q psy8898 103 DRSCYLAHGADPFL---KNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQY 179 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~---~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1236)
|+++|++++. .+..
T Consensus 55 ----Ll~~~~~~~~~~~~~~~----------------------------------------------------------- 71 (228)
T 2dzn_A 55 ----LLSKMENVNLDDYPDDS----------------------------------------------------------- 71 (228)
T ss_dssp ----HHHTCTTCCGGGCCCTT-----------------------------------------------------------
T ss_pred ----HHhccccccccccCCCC-----------------------------------------------------------
Confidence 9999965543 2222
Q ss_pred CCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcC--CCCCCCCCCCCcHHHHHHHc
Q psy8898 180 SGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAG--ANVNAMDLWQFTPLHEAASK 257 (1236)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~g--a~~n~~d~~g~TpL~~A~~~ 257 (1236)
|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..
T Consensus 72 ----------------------------------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~ 117 (228)
T 2dzn_A 72 ----------------------------------GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117 (228)
T ss_dssp ----------------------------------SCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT
T ss_pred ----------------------------------CCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc
Confidence 667788888888888888888877 77777888888888888888
Q ss_pred CcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCC
Q psy8898 258 SRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTP 337 (1236)
Q Consensus 258 g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~ 337 (1236)
|+.+++++|+++|++++.++..|.||
T Consensus 118 ~~~~~~~~Ll~~g~~~~~~~~~g~t~------------------------------------------------------ 143 (228)
T 2dzn_A 118 KWFEVSQFLIENGASVRIKDKFNQIP------------------------------------------------------ 143 (228)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCH------------------------------------------------------
T ss_pred CCHhHHHHHHHcCCCccccCCCCCCH------------------------------------------------------
Confidence 88888888888888877776655554
Q ss_pred CchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHH
Q psy8898 338 LPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTR 417 (1236)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~ 417 (1236)
||.|+..|+.+++++
T Consensus 144 -----------------------------------------------------------------L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 144 -----------------------------------------------------------------LHRAASVGSLKLIEL 158 (228)
T ss_dssp -----------------------------------------------------------------HHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHcCCHHHHHH
Confidence 444556666777777
Q ss_pred HHhhCCCcccccCCCCCCchHHHHHHhcCCHHHHHHHH-hcCCCCCCCCCCCccCCCChHHHHHhcC
Q psy8898 418 LLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLL-AHGADVHSKDNATDKWGFTPLHEAAQKG 483 (1236)
Q Consensus 418 Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~~d~~g~t~L~~A~~~~ 483 (1236)
|++.++.+++..+..| +||||+|+..|+.+++++|+ ++|++++ .+|..|+|||++|+..+
T Consensus 159 Ll~~g~~~~~~~d~~g--~t~L~~A~~~~~~~~v~~Ll~~~ga~~~----~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQG--WTPLFHALAEGHGDAAVLLVEKYGAEYD----LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp HHTTTCCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHHHCCCSC----CBCTTSCBGGGGCSSTT
T ss_pred HHhcCcccccCcCCCC--CCHHHHHHHcCCHHHHHHHHHhcCCCCC----ccCCCCCcHHHHHHHHH
Confidence 7776446667666555 49999999999999999999 8899984 45558999999997653
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-32 Score=312.10 Aligned_cols=261 Identities=16% Similarity=0.135 Sum_probs=184.0
Q ss_pred cHHHHHHHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-----------------
Q psy8898 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA----------------- 65 (1236)
Q Consensus 3 ~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~----------------- 65 (1236)
..|+|++|+++|++++.+|..|.|+++ |+.++|++|+++|++++. ++++.|+
T Consensus 31 ~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 31 THDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp CTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------------
T ss_pred cCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcccccccccccCCccc
Confidence 457899999999999999999999988 999999999999998765 3444444
Q ss_pred ------HhCCCceEEeeeccccCccccccccccCCCCCCCCCcchhHHHhcCCCCCC-cccCCCCcchhhcccChHHHHH
Q psy8898 66 ------AKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFL-KNQEGQTPLDLTVAEDVRSLLQ 138 (1236)
Q Consensus 66 ------~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~ 138 (1236)
..+..+++ ++|++.|++++. +|..|+||||+|+..|+.++|+
T Consensus 100 ~~~~a~~~~~~~~~-------------------------------~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~ 148 (327)
T 1sw6_A 100 QQHVSFDSLLQEVN-------------------------------DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 148 (327)
T ss_dssp ----CHHHHHHHHH-------------------------------HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHH
T ss_pred hhHHHHHhhHHHHH-------------------------------HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence 33333343 448999999999 8999999999999999999988
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCcccc----CC
Q psy8898 139 DAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVA----LG 214 (1236)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~----~g 214 (1236)
.|++.. ++++ .|
T Consensus 149 ~Ll~~G----------------------------------------------------------------ad~n~~d~~g 164 (327)
T 1sw6_A 149 HLVKHG----------------------------------------------------------------SNRLYGDNMG 164 (327)
T ss_dssp HHHHTT----------------------------------------------------------------CCTTBCCTTC
T ss_pred HHHHcC----------------------------------------------------------------CCCCCcCCCC
Confidence 888653 2222 58
Q ss_pred chHHHHHHhcCc---HHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH----cCcHHHHHHHHhCCCCCCCCCCCCCCcccc
Q psy8898 215 LVPLHNACSYGH---FEVTEMLIKAG-ANVNAMDLWQFTPLHEAAS----KSRLEVCSLLLSEGADPTLHNCHSKSAIDV 286 (1236)
Q Consensus 215 ~T~L~~Aa~~g~---~~iv~~Ll~~g-a~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 286 (1236)
+||||+|+..|+ .++++.|++.+ ++++.+|..|+||||+|+. .|+.+++++|++.++....
T Consensus 165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~----------- 233 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV----------- 233 (327)
T ss_dssp CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-----------
T ss_pred CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh-----------
Confidence 899999999998 78888888886 7799999999999999999 8999999999987432100
Q ss_pred ccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhh
Q psy8898 287 APTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVRE 366 (1236)
Q Consensus 287 a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1236)
........ ..+...+++++.
T Consensus 234 -----------------------------------~~~~~~i~-------------------------~~~~~~g~~~~~ 253 (327)
T 1sw6_A 234 -----------------------------------KKQNRPIQ-------------------------SGTNEKESKPND 253 (327)
T ss_dssp -----------------------------------HGGGCCEE-------------------------EC----------
T ss_pred -----------------------------------cccchHHH-------------------------hhhhcccCCccc
Confidence 00000000 000112333333
Q ss_pred hccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccccCCCCCCchHHHHHHhcC
Q psy8898 367 HRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYN 446 (1236)
Q Consensus 367 ~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g 446 (1236)
.+. .|+|||+ .|+. +++|++. +++..+..| +||||+|+..|
T Consensus 254 ~~~----~g~t~L~------------------------~a~~------~~~Ll~~---~~n~~d~~G--~TpLh~A~~~g 294 (327)
T 1sw6_A 254 KNG----ERKDSIL------------------------ENLD------LKWIIAN---MLNAQDSNG--DTCLNIAARLG 294 (327)
T ss_dssp ----------CHHH------------------------HHCS------HHHHHHH---TTTCCCTTS--CCHHHHHHHHC
T ss_pred ccc----cCCChhH------------------------HHHH------HHHHHHh---CCCCCCCCC--CCHHHHHHHcC
Confidence 222 2444444 4433 7788877 466666655 59999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHhcC
Q psy8898 447 RVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483 (1236)
Q Consensus 447 ~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~~~~ 483 (1236)
+.++|++|+++|++++ .+|..|+||||+|+++|
T Consensus 295 ~~~~v~~Ll~~Gad~~----~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 295 NISIVDALLDYGADPF----IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CHHHHHHHHHTTCCTT----CCCTTSCCGGGGTCC--
T ss_pred CHHHHHHHHHcCCCCc----ccCCCCCCHHHHHHhcC
Confidence 9999999999999995 55569999999998764
No 40
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=2e-30 Score=278.99 Aligned_cols=203 Identities=27% Similarity=0.318 Sum_probs=181.6
Q ss_pred CCcHHHHHHHHHcCCCccc-cCCCCcchhhHHhhcCCHHHHHHHHHCC--CCCCC-CCCCCCCHHHHHHHhCCCceEEee
Q psy8898 1 YGRKDVVEYLLASGASIHA-RDDGGLHPLHNACSFGHADVVRLLLEAD--ANPNT-RDNWNFTPLHEAAAKGKTDVCIGI 76 (1236)
Q Consensus 1 ~G~~~~v~~Ll~~ga~~n~-~d~~g~t~L~~A~~~g~~~iv~~Ll~~g--a~~n~-~d~~g~t~L~~A~~~g~~~iv~~L 76 (1236)
+|+.++|++|++.|.+++. +|.+|+||||+|+..|+.++|++|+++| ++++. .|..|.||||+|+..|+.+++++
T Consensus 12 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~- 90 (228)
T 2dzn_A 12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS- 90 (228)
T ss_dssp TTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHH-
T ss_pred hCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHH-
Confidence 5899999999999988664 8999999999999999999999999999 45555 88999999999999999999988
Q ss_pred eccccCccccccccccCCCCCCCCCcchhHHHhcC--CCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCC
Q psy8898 77 YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHG--ADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETA 154 (1236)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~ 154 (1236)
|+++| ++++..+..|.||||+|+..++.++++.|++.....
T Consensus 91 ------------------------------Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------- 133 (228)
T 2dzn_A 91 ------------------------------LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------- 133 (228)
T ss_dssp ------------------------------HHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------
T ss_pred ------------------------------HHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-------
Confidence 99999 899999999999999999999999999888753110
Q ss_pred CCCCCCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHH
Q psy8898 155 SVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLI 234 (1236)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll 234 (1236)
......|.||||+|+..|+.+++++|+
T Consensus 134 -----------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 134 -----------------------------------------------------RIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp -----------------------------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 001114899999999999999999999
Q ss_pred hcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-hCCCCCCCCCCCCCCccccccchhHHH
Q psy8898 235 KAG-ANVNAMDLWQFTPLHEAASKSRLEVCSLLL-SEGADPTLHNCHSKSAIDVAPTRELQQ 294 (1236)
Q Consensus 235 ~~g-a~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~g~t~l~~a~~~~~~~ 294 (1236)
+.| ++++.+|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|...+..+
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~ 222 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHH
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999 899999999999999999996654433
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.5e-29 Score=255.01 Aligned_cols=159 Identities=31% Similarity=0.415 Sum_probs=136.1
Q ss_pred hhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhH
Q psy8898 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKE 625 (1236)
Q Consensus 546 t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~ 625 (1236)
++|+.||+.|+.++|++|+++|+++|.+|..|+||||+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a----------------------------------------- 44 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA----------------------------------------- 44 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-----------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-----------------------------------------
Confidence 479999999999999999999998887776665555443
Q ss_pred HHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCC
Q psy8898 626 ELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTG 705 (1236)
Q Consensus 626 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g 705 (1236)
+..++.+++++|++.+......+..|
T Consensus 45 ------------------------------------------------------~~~~~~~~~~~ll~~gad~~~~d~~g 70 (169)
T 4gpm_A 45 ------------------------------------------------------AENGHKEVVKLLISKGADVNAKDSDG 70 (169)
T ss_dssp ------------------------------------------------------HHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred ------------------------------------------------------HHcCCHHHHHHHHhcccchhhhccCC
Confidence 55666777777777777666666678
Q ss_pred ChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcC
Q psy8898 706 DTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDD 785 (1236)
Q Consensus 706 ~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~ 785 (1236)
+||||+|+.. ++.++|++|+++|+|+|.+|..|+||||+|++.|+.++|++|+++|++++.+|.+|+||||+|++.|
T Consensus 71 ~TpLh~A~~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g 147 (169)
T 4gpm_A 71 RTPLHHAAEN---GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147 (169)
T ss_dssp CCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHc---CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 8888888887 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCc
Q psy8898 786 KTQAVRVLLSHNADTSI 802 (1236)
Q Consensus 786 ~~~iv~~Ll~~ga~~~~ 802 (1236)
+.+++++|+++||+++-
T Consensus 148 ~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 148 NEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CHHHHHHHHTC------
T ss_pred CHHHHHHHHHCCCCcCC
Confidence 99999999999998764
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=9.2e-30 Score=256.54 Aligned_cols=155 Identities=34% Similarity=0.417 Sum_probs=126.0
Q ss_pred chhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCcchh
Q psy8898 26 HPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRS 105 (1236)
Q Consensus 26 t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 105 (1236)
++|+.||+.|+.++|++|+++|+|+|.+|..|+||||+|+..++.+++++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~------------------------------ 55 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKL------------------------------ 55 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH------------------------------
Confidence 36788888888888888888888888888888888888888888888776
Q ss_pred HHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCCCCC
Q psy8898 106 CYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGD 185 (1236)
Q Consensus 106 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1236)
|+++|++++.+|..|+||||+|+..|+.++++.|++..
T Consensus 56 -ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g----------------------------------------- 93 (169)
T 4gpm_A 56 -LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG----------------------------------------- 93 (169)
T ss_dssp -HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----------------------------------------
T ss_pred -HHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCc-----------------------------------------
Confidence 78888888888888888888888888777777776542
Q ss_pred cccCCCCCCChhhhHHHhcCcCCcccc----CCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q psy8898 186 SVSLPPTSPPQPLALETVIMPSGQAVA----LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLE 261 (1236)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~Ll~~g~~~~----~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~ 261 (1236)
++++ .|+||||+||..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+
T Consensus 94 -----------------------advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~ 150 (169)
T 4gpm_A 94 -----------------------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150 (169)
T ss_dssp -----------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred -----------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 2221 4889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC
Q psy8898 262 VCSLLLSEGADPTL 275 (1236)
Q Consensus 262 iv~~Ll~~ga~~~~ 275 (1236)
++++|+++||+++-
T Consensus 151 iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 151 VVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHTC------
T ss_pred HHHHHHHCCCCcCC
Confidence 99999999999853
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=6.3e-30 Score=276.54 Aligned_cols=217 Identities=21% Similarity=0.206 Sum_probs=182.4
Q ss_pred cccCCCCcchhhHHhhcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccC
Q psy8898 18 HARDDGGLHPLHNACSFGHADVVRLLLEADA----NPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 18 n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga----~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
+.+|.+|+||||+||..|+.++|++|++.++ ++|..|..|+||||+|+..|+.+++++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------ 63 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA------------------ 63 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHC------------------
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHH------------------
Confidence 3578999999999999999999999998765 799999999999999999999999998
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++.++..|.||||+|+..|+.++++.|++.........
T Consensus 64 -------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------------- 108 (236)
T 1ikn_D 64 -------------LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS---------------------- 108 (236)
T ss_dssp -------------CCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC----------------------
T ss_pred -------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHH----------------------
Confidence 999999999999999999999999999999999998642110000
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCC-CCCcHHH
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-WQFTPLH 252 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~-~g~TpL~ 252 (1236)
........|.||||+|+..|+.++|++|+++|++++.++. .|+||||
T Consensus 109 --------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 109 --------------------------------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156 (236)
T ss_dssp --------------------------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred --------------------------------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence 0001112589999999999999999999999999999997 9999999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccC--CC
Q psy8898 253 EAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNF--KH 330 (1236)
Q Consensus 253 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~ 330 (1236)
+|+..|+.++|++|+++|++++.+|..|.|||++| +..|+.+++++|++.+.... ..
T Consensus 157 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A---------------------~~~~~~~~~~~Ll~~ga~~~~~~~ 215 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT---------------------WGRPSTRIQQQLGQLTLENLQMLP 215 (236)
T ss_dssp HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC---------------------TTSSCHHHHHHHHTTSCGGGSSCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHH---------------------HccCchHHHHHHHHcchhhhhcCC
Confidence 99999999999999999999999999999997774 67899999999999987555 33
Q ss_pred CCCCCCCCch
Q psy8898 331 PYTGDTPLPG 340 (1236)
Q Consensus 331 ~~~~~t~l~~ 340 (1236)
...+.++...
T Consensus 216 ~~~~~~~~~~ 225 (236)
T 1ikn_D 216 ESEDEESYDT 225 (236)
T ss_dssp CCCTTTCCCC
T ss_pred ccchHHHHhh
Confidence 4556676643
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=5.7e-29 Score=268.39 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=164.5
Q ss_pred cchhHHHHHhcCcHHHHHHHHhC-CCCCccCCCCCCCHHHHHH-------HHHHHhcCCCCcccCCCCCChhhhhcccCc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKH-GANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTR 615 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~-g~~v~~~d~~g~tpL~~a~-------~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~ 615 (1236)
|+||||+|+..|+.+++++|++. |++++..|..|+||||+|+ +++|++.|+++...+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------- 67 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP--------------- 67 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC---------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc---------------
Confidence 88999999999999999999998 9999999999999998887 467777776652211
Q ss_pred ccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccC
Q psy8898 616 AVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSD 695 (1236)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~ 695 (1236)
.+.++..|.||||.|+..|+.+++++|++.+
T Consensus 68 -------------------------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 98 (232)
T 2rfa_A 68 -------------------------------------------------MTSELYEGQTALHIAVINQNVNLVRALLARG 98 (232)
T ss_dssp -------------------------------------------------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -------------------------------------------------ccccCCCCcCHHHHHHHcCCHHHHHHHHhCC
Confidence 1223445666777778889999999999987
Q ss_pred CcccCCCC-------------CCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHH----H
Q psy8898 696 VVNFKHPY-------------TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVL----D 758 (1236)
Q Consensus 696 ~~~~~~~~-------------~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv----~ 758 (1236)
......+. .|+||||+|+.. ++.+++++|+++|+|+|.+|..|+||||+|+..|+.+++ +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~ 175 (232)
T 2rfa_A 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACV---GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175 (232)
T ss_dssp CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHH
T ss_pred CCCCcccCCcceeecccccccCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHH
Confidence 76555443 599999999997 889999999999999999999999999999999999988 9
Q ss_pred HHHHCCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q psy8898 759 TLLRLGAKV------NLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803 (1236)
Q Consensus 759 ~Ll~~ga~~------n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 803 (1236)
+|+++|+++ +.+|..|+||||+|++.|+.+++++|+++|++....
T Consensus 176 ~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp HHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 999999998 689999999999999999999999999999766543
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=1.4e-28 Score=265.31 Aligned_cols=206 Identities=20% Similarity=0.179 Sum_probs=174.8
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCC
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEA-DANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH 101 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1236)
.|+||||+||..|+.++|++|++. |++++..|..|+||||+|+..|+.+++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~-------------------------- 55 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMV-------------------------- 55 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHH--------------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHH--------------------------
Confidence 589999999999999999999998 99999999999999999999999999988
Q ss_pred cchhHHHhcCCCC-----CCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCC
Q psy8898 102 KDRSCYLAHGADP-----FLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPP 176 (1236)
Q Consensus 102 ~~v~~Ll~~ga~~-----~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1236)
|+++|+++ +..|..|.||||+|+..|+.++++.|++............
T Consensus 56 -----Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~---------------------- 108 (232)
T 2rfa_A 56 -----LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS---------------------- 108 (232)
T ss_dssp -----HHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG----------------------
T ss_pred -----HHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc----------------------
Confidence 99999987 6778899999999999999999999998643221110000
Q ss_pred CccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy8898 177 AQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAAS 256 (1236)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~ 256 (1236)
. +..........|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 109 ------------------~-------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 163 (232)
T 2rfa_A 109 ------------------V-------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163 (232)
T ss_dssp ------------------G-------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred ------------------c-------eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 0 000111112269999999999999999999999999999999999999999999
Q ss_pred cCcHHHH----HHHHhCCCCC------CCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccc
Q psy8898 257 KSRLEVC----SLLLSEGADP------TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVV 326 (1236)
Q Consensus 257 ~g~~~iv----~~Ll~~ga~~------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~ 326 (1236)
.|+.+++ ++|+++|+++ +.+|..|.|| |+.|+..|+.+++++|++++..
T Consensus 164 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp---------------------l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP---------------------FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH---------------------HHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH---------------------HHHHHHcCCHHHHHHHHhcCcc
Confidence 9999988 9999999998 4778778777 7778999999999999988654
Q ss_pred c
Q psy8898 327 N 327 (1236)
Q Consensus 327 ~ 327 (1236)
.
T Consensus 223 ~ 223 (232)
T 2rfa_A 223 I 223 (232)
T ss_dssp C
T ss_pred c
Confidence 3
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=7.3e-28 Score=253.25 Aligned_cols=182 Identities=25% Similarity=0.261 Sum_probs=166.6
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCC-CCccCCCCCCCHHHHHH-------HHHHHhcCCCCcccCCCCCChhhhhcccCc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGA-NVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTR 615 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~-~v~~~d~~g~tpL~~a~-------~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~ 615 (1236)
+.|||+.|+..|+.++++.|++.+. +++..|..|.||||+|+ +++|+++|++++..+..|.||||+|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A----- 79 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA----- 79 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-----
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-----
Confidence 7799999999999999999999876 99999999999999997 5799999999998888777776665
Q ss_pred ccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhcc-
Q psy8898 616 AVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTS- 694 (1236)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~- 694 (1236)
+..|+.+++++|++.
T Consensus 80 ----------------------------------------------------------------~~~~~~~~~~~Ll~~~ 95 (201)
T 3hra_A 80 ----------------------------------------------------------------GAQGRTEILAYMLKHA 95 (201)
T ss_dssp ----------------------------------------------------------------HHTTCHHHHHHHHHHS
T ss_pred ----------------------------------------------------------------HHcCCHHHHHHHHhcc
Confidence 678899999999955
Q ss_pred CCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcC-CCCCCCCCCCchHHHHHHHhCC-----HHHHHHHHHCCCCcc
Q psy8898 695 DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG-AHLNEKNKELLAPIHLAADLGH-----LDVLDTLLRLGAKVN 768 (1236)
Q Consensus 695 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~G~T~Lh~A~~~g~-----~~iv~~Ll~~ga~~n 768 (1236)
+......+..|.||||+|+.. ++.+++++|+++| ++++.+|..|+||||+|+..++ .+++++|+++|++++
T Consensus 96 ~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 96 TPDLNKHNRYGGNALIPAAEK---GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCCTTCCCTTSCCSHHHHHHT---TCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CcccccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 445556666799999999997 8999999999998 9999999999999999999998 999999999999999
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8898 769 LVDVLGQTALHRTARDDKTQAVRVLLSHN 797 (1236)
Q Consensus 769 ~~d~~G~tpL~~A~~~~~~~iv~~Ll~~g 797 (1236)
.+|..|+||||+|+..|+.+++++|+++|
T Consensus 173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 173 IKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999987
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=2.7e-29 Score=271.57 Aligned_cols=186 Identities=31% Similarity=0.333 Sum_probs=164.1
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCC----CCccCCCCCCCHHHHHH-------HHHHHhcCCCCcccCCCCCChhhhhcc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGA----NVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVP 612 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~----~v~~~d~~g~tpL~~a~-------~~~Ll~~g~d~~~~~~~g~t~L~~a~~ 612 (1236)
|+||||+|+..|+.+++++|++.+. +++..|..|.||||+|+ +++|+++|++++.+|..|.||||+|
T Consensus 8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-- 85 (236)
T 1ikn_D 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA-- 85 (236)
T ss_dssp CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH--
T ss_pred CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--
Confidence 8899999999999999999998765 68888888999998887 5678888888888777777666655
Q ss_pred cCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhh
Q psy8898 613 CTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFL 692 (1236)
Q Consensus 613 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll 692 (1236)
+..|+.+++++|+
T Consensus 86 -------------------------------------------------------------------~~~~~~~~v~~Ll 98 (236)
T 1ikn_D 86 -------------------------------------------------------------------CEQGCLASVGVLT 98 (236)
T ss_dssp -------------------------------------------------------------------HHHTCHHHHHHHH
T ss_pred -------------------------------------------------------------------HHcCCHHHHHHHH
Confidence 6778899999999
Q ss_pred ccCCc------ccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCC-CCchHHHHHHHhCCHHHHHHHHHCCC
Q psy8898 693 TSDVV------NFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK-ELLAPIHLAADLGHLDVLDTLLRLGA 765 (1236)
Q Consensus 693 ~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~-~G~T~Lh~A~~~g~~~iv~~Ll~~ga 765 (1236)
+.+.. ....+..|+||||+|+.. ++.+++++|+++|++++.++. .|+||||+|+..|+.++|++|+++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 175 (236)
T 1ikn_D 99 QSCTTPHLHSILKATNYNGHTCLHLASIH---GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175 (236)
T ss_dssp HSTTTTSSSCGGGCCCTTCCCHHHHHHHT---TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred hcccchhHHHHhhccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 88653 344555699999999997 889999999999999999998 99999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy8898 766 KVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801 (1236)
Q Consensus 766 ~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~ 801 (1236)
+++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus 176 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 999999999999999999999999999999999765
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=6.7e-28 Score=253.56 Aligned_cols=192 Identities=19% Similarity=0.258 Sum_probs=171.3
Q ss_pred CCCCcchhhHHhhcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCC
Q psy8898 21 DDGGLHPLHNACSFGHADVVRLLLEADA-NPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCP 99 (1236)
Q Consensus 21 d~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~ 99 (1236)
+..+.||||.||..|+.++|+.|++.+. +++..|..|.||||+|+..|+.+++++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------ 57 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA------------------------ 57 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH------------------------
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH------------------------
Confidence 3568899999999999999999999876 999999999999999999999999988
Q ss_pred CCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcc
Q psy8898 100 MHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQY 179 (1236)
Q Consensus 100 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1236)
|+++|++++..+..|.||||+|+..|+.++++.|++......
T Consensus 58 -------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------------------------- 99 (201)
T 3hra_A 58 -------LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL------------------------------- 99 (201)
T ss_dssp -------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT-------------------------------
T ss_pred -------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-------------------------------
Confidence 999999999999999999999999999999999996532110
Q ss_pred CCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcC
Q psy8898 180 SGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAG-ANVNAMDLWQFTPLHEAASKS 258 (1236)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~g-a~~n~~d~~g~TpL~~A~~~g 258 (1236)
......|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..+
T Consensus 100 ----------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 100 ----------------------------NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151 (201)
T ss_dssp ----------------------------TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred ----------------------------ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Confidence 001114889999999999999999999999 999999999999999999998
Q ss_pred c-----HHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhc
Q psy8898 259 R-----LEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTS 323 (1236)
Q Consensus 259 ~-----~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~ 323 (1236)
+ .+++++|+++|++++.+|..|.|| |+.|+..|+.+++++|++.
T Consensus 152 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~---------------------l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTA---------------------MDYANQKGYTEISKILAQY 200 (201)
T ss_dssp CCSHHHHHHHHHHHHTTCCTTCCCTTSCCH---------------------HHHHHHHTCHHHHHHHHTC
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCCCCH---------------------HHHHHHcCCHhHHHHHHhc
Confidence 8 999999999999999999999888 6678999999999999865
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=1.9e-28 Score=271.38 Aligned_cols=226 Identities=22% Similarity=0.257 Sum_probs=168.0
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHh----cCCCCCCCCCCCccCCCChHHHHHhc---CchHHHhhcCCCCCCCCCchhHH
Q psy8898 433 GRHSTPLHFAAGYNRVAVVEYLLA----HGADVHSKDNATDKWGFTPLHEAAQK---GRTQLSALLPLSPSAANDPLREL 505 (1236)
Q Consensus 433 ~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~~~~~~~~d~~g~t~L~~A~~~---~~~~iv~~L~~~~~~~~~~~~~L 505 (1236)
..|+||||+|+..|+.++|+.|++ .+++++......|..|+||||+|+.. |+.+++++|++.+....
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~------ 84 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD------ 84 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc------
Confidence 344688888888888888887776 45555332224566888888888876 88888888854332111
Q ss_pred HHHHhcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHH
Q psy8898 506 FEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585 (1236)
Q Consensus 506 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~ 585 (1236)
.++.+++.... +.+. .|+||||+|+..|+.++|++|+++|++++..+..+.
T Consensus 85 ----------~~~~~i~~~~~---~~d~---------~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------- 135 (273)
T 2pnn_A 85 ----------SLKQFVNASYT---DSYY---------KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF------- 135 (273)
T ss_dssp ----------CHHHHHTCCCC---STTT---------TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG-------
T ss_pred ----------chhHHhhcccc---cccC---------CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc-------
Confidence 12222322111 1111 288999999999999999999999999887765430
Q ss_pred HHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccc
Q psy8898 586 AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMP 665 (1236)
Q Consensus 586 ~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1236)
...
T Consensus 136 -----------------------~~~------------------------------------------------------ 138 (273)
T 2pnn_A 136 -----------------------FKK------------------------------------------------------ 138 (273)
T ss_dssp -----------------------GSS------------------------------------------------------
T ss_pred -----------------------ccc------------------------------------------------------
Confidence 000
Q ss_pred cchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHH---cCCCCCCCCCCCc
Q psy8898 666 RIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR---KGAHLNEKNKELL 742 (1236)
Q Consensus 666 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~---~gadin~~d~~G~ 742 (1236)
......+..|+||||+|+.. ++.+++++|++ +|++++.+|..|+
T Consensus 139 ------------------------------~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~gad~~~~d~~g~ 185 (273)
T 2pnn_A 139 ------------------------------TKGRPGFYFGELPLSLAACT---NQLAIVKFLLQNSWQPADISARDSVGN 185 (273)
T ss_dssp ------------------------------CSSSCCCCSCBSHHHHHHHT---TCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred ------------------------------ccccccccCCCCHHHHHHHc---CCHHHHHHHHhcccCCCCceeeCCCCC
Confidence 00011223489999999987 78999999999 9999999999999
Q ss_pred hHHHHHHHhCC---------HHHHHHHHHCCCCcc-------ccCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCcc
Q psy8898 743 APIHLAADLGH---------LDVLDTLLRLGAKVN-------LVDVLGQTALHRTARDDKTQAVRVLLSHNA-DTSIV 803 (1236)
Q Consensus 743 T~Lh~A~~~g~---------~~iv~~Ll~~ga~~n-------~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga-~~~~~ 803 (1236)
||||+|++.|+ .+++++|+++|+++| .+|..|+||||+|+..|+.+++++|+++|| ++...
T Consensus 186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred cHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence 99999999998 899999999999997 489999999999999999999999999999 66654
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=6.7e-28 Score=264.23 Aligned_cols=206 Identities=18% Similarity=0.108 Sum_probs=160.9
Q ss_pred cchhHHHHHhcCcHH----HHHHHHhCCCCCcc----CCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCc
Q psy8898 544 GLVPLHNACSYGHYE----VTEMLVKHGANVNV----ADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTR 615 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~----iv~~Ll~~g~~v~~----~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~ 615 (1236)
|+||||.|+..|+.+ ++++|++.|++++. .|..|+||||+|+..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~---------------------------- 53 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN---------------------------- 53 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHT----------------------------
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHc----------------------------
Confidence 789999999999997 55666666777766 555555555555421
Q ss_pred ccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccC
Q psy8898 616 AVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSD 695 (1236)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~ 695 (1236)
...++.+++++|........... ..+......++..|.||||.|+..|+.+++++|++.+
T Consensus 54 -~~~g~~~~v~~Ll~~g~~~~~~~-------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 54 -LQDGVNACIMPLLQIDKDSGNPK-------------------PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp -CBTTBCTTHHHHHHHHHHTTCSS-------------------CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -cccchHHHHHHHHhcCCcccchh-------------------hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 01145555555544322111000 0011112234567899999999999999999999998
Q ss_pred CcccCCCCC-------------CChHHHHHhhCCCCChHHHHHHHHH---cCCCCCCCCCCCchHHHHHHH--hCCHH--
Q psy8898 696 VVNFKHPYT-------------GDTPLHCAVTSPYPKRKAIVESLIR---KGAHLNEKNKELLAPIHLAAD--LGHLD-- 755 (1236)
Q Consensus 696 ~~~~~~~~~-------------g~t~L~~A~~~~~~~~~~iv~~Ll~---~gadin~~d~~G~T~Lh~A~~--~g~~~-- 755 (1236)
......+.. |+||||+|+.. ++.+++++|++ +|+++|.+|..|+||||+|+. .++.+
T Consensus 114 a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~ 190 (256)
T 2etb_A 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACT---KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENS 190 (256)
T ss_dssp CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT---TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHH
T ss_pred CCCCcccccccccccccccccCCCCHHHHHHHc---CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhh
Confidence 876666654 99999999997 89999999999 999999999999999999999 78888
Q ss_pred -----HHHHHHHCCCCc-------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy8898 756 -----VLDTLLRLGAKV-------NLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800 (1236)
Q Consensus 756 -----iv~~Ll~~ga~~-------n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~ 800 (1236)
+|++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 191 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999 999999999999999999999999999998644
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=4.4e-28 Score=268.42 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=126.3
Q ss_pred cCCCccccCCCCcchhhHHhhcCCHHHHHHHHH----CCCCCC----CCCCCCCCHHHHHHHh---CCCceEEeeecccc
Q psy8898 13 SGASIHARDDGGLHPLHNACSFGHADVVRLLLE----ADANPN----TRDNWNFTPLHEAAAK---GKTDVCIGIYFAEH 81 (1236)
Q Consensus 13 ~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~n----~~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~ 81 (1236)
.|+..+..|..|+||||.||..|+.++|+.|++ .+++++ ..|..|+||||+|+.. |+.+++++
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~------ 75 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL------ 75 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHH------
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHH------
Confidence 567788899999999999999999999998887 566666 4688999999999987 99999988
Q ss_pred CccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q psy8898 82 SSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQ 161 (1236)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 161 (1236)
|+++|++++.. +.++....
T Consensus 76 -------------------------Ll~~ga~~~~~--------------------~~~i~~~~---------------- 94 (273)
T 2pnn_A 76 -------------------------LLDVARKTDSL--------------------KQFVNASY---------------- 94 (273)
T ss_dssp -------------------------HHHHHHHTTCH--------------------HHHHTCCC----------------
T ss_pred -------------------------HHHhhccccch--------------------hHHhhccc----------------
Confidence 99998865421 11111000
Q ss_pred ccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCC
Q psy8898 162 YSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVN 241 (1236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n 241 (1236)
......|+||||+||..|+.++|++|+++|++++
T Consensus 95 ----------------------------------------------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 95 ----------------------------------------------TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp ----------------------------------------------CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ----------------------------------------------ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 0001148899999999999999999999999999
Q ss_pred CCCC--------------CCCcHHHHHHHcCcHHHHHHHHh---CCCCCCCCCCCCCCcccc
Q psy8898 242 AMDL--------------WQFTPLHEAASKSRLEVCSLLLS---EGADPTLHNCHSKSAIDV 286 (1236)
Q Consensus 242 ~~d~--------------~g~TpL~~A~~~g~~~iv~~Ll~---~ga~~~~~~~~g~t~l~~ 286 (1236)
..+. .|+||||+|+..|+.++|++|++ +|++++.+|..|.||||+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~ 190 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHH
Confidence 9987 79999999999999999999999 999999999988888444
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=5e-28 Score=265.26 Aligned_cols=204 Identities=18% Similarity=0.146 Sum_probs=170.5
Q ss_pred CCcchhhHHhhcCCHH----HHHHHHHCCCCCCC----CCCCCCCHHHHHHHh---CCCceEEeeeccccCccccccccc
Q psy8898 23 GGLHPLHNACSFGHAD----VVRLLLEADANPNT----RDNWNFTPLHEAAAK---GKTDVCIGIYFAEHSSKSNQYVYG 91 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~n~----~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~ 91 (1236)
.|+||||.||..|+.+ ++++|++.|++++. .|..|+||||+|+.. |+.+++++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~---------------- 64 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP---------------- 64 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH----------------
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHH----------------
Confidence 4899999999999997 66788889999998 899999999999999 99999988
Q ss_pred cCCCCCCCCCcchhHHHhcCCCCCCc-----------ccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy8898 92 IGGGTGCPMHKDRSCYLAHGADPFLK-----------NQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPS 160 (1236)
Q Consensus 92 ~~~~~~~~~~~~v~~Ll~~ga~~~~~-----------~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~ 160 (1236)
|+++|++++.. |..|.||||+|+..|+.++++.|++............
T Consensus 65 ---------------Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~------ 123 (256)
T 2etb_A 65 ---------------LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR------ 123 (256)
T ss_dssp ---------------HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG------
T ss_pred ---------------HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccc------
Confidence 89998887633 4789999999999999999999998642211100000
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHh---cC
Q psy8898 161 QYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIK---AG 237 (1236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~---~g 237 (1236)
. +-...+.....|.||||+||..|+.++|++|++ +|
T Consensus 124 -----------------------~------------------~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g 162 (256)
T 2etb_A 124 -----------------------F------------------FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162 (256)
T ss_dssp -----------------------G------------------GSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred -----------------------c------------------ccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 0 000111111249999999999999999999999 99
Q ss_pred CCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHhCCCCC-------CCCCCCCCCccccccchhHHHHhhhccC
Q psy8898 238 ANVNAMDLWQFTPLHEAAS--KSRLE-------VCSLLLSEGADP-------TLHNCHSKSAIDVAPTRELQQRLSNEFK 301 (1236)
Q Consensus 238 a~~n~~d~~g~TpL~~A~~--~g~~~-------iv~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 301 (1236)
+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|.||
T Consensus 163 a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp------------------ 224 (256)
T 2etb_A 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP------------------ 224 (256)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH------------------
T ss_pred CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH------------------
Confidence 9999999999999999999 88888 999999999999 8889888888
Q ss_pred cchHHHHHHcCChHHHHHhhhccc
Q psy8898 302 GHCLLEACRQGDPSRVKKFLTSDV 325 (1236)
Q Consensus 302 ~~~l~~A~~~g~~~~v~~ll~~~~ 325 (1236)
|+.|+..|+.+++++|++.+.
T Consensus 225 ---L~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 225 ---LKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHhCCHHHHHHHHhCCC
Confidence 677899999999999998754
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=9.7e-27 Score=255.68 Aligned_cols=212 Identities=19% Similarity=0.165 Sum_probs=163.6
Q ss_pred cchhHHHHHhcCcHHHHHHHHh----CCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCccccc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVK----HGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLS 619 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~----~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~ 619 (1236)
++|+||.|+..|+.++++.|++ .|++++..+.. .+..|.||||+|+.. ...
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~----------------------~~~~g~t~L~~A~~~---~~~ 59 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFR----------------------EPSTGKTCLPKALLN---LSA 59 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGS----------------------CTTTCCCHHHHHHTS---CBT
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhh----------------------ccCCCCcHHHHHHHH---hhc
Confidence 7899999999999996555554 67766654411 124455555555310 134
Q ss_pred CCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCccc
Q psy8898 620 GDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNF 699 (1236)
Q Consensus 620 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~ 699 (1236)
++.+++++|........... .......+..+..|.||||+||..|+.++|++|++.+....
T Consensus 60 g~~~~v~~Ll~~g~~~~~~~-------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 120 (260)
T 3jxi_A 60 GRNDTIPILLDIAEKTGNMR-------------------EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120 (260)
T ss_dssp TBCTHHHHHHHHHHHTTCHH-------------------HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHhcccccchH-------------------hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC
Confidence 56666666655322111100 00112234455689999999999999999999999988766
Q ss_pred CCC--------------CCCChHHHHHhhCCCCChHHHHHHHHH---cCCCCCCCCCCCchHHHHHHHhCC---------
Q psy8898 700 KHP--------------YTGDTPLHCAVTSPYPKRKAIVESLIR---KGAHLNEKNKELLAPIHLAADLGH--------- 753 (1236)
Q Consensus 700 ~~~--------------~~g~t~L~~A~~~~~~~~~~iv~~Ll~---~gadin~~d~~G~T~Lh~A~~~g~--------- 753 (1236)
..+ ..|+||||+|+.. ++.+++++|++ +|+++|.+|..|+||||+|++.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 121 AQARGRFFQPKDEGGYFYFGELPLSLAACT---NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197 (260)
T ss_dssp CCCEECCCSSSCCCCSCCSCSSHHHHHHHT---TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred ccccccccCcccccccccCCCCHHHHHHHc---CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence 665 4699999999997 89999999999 999999999999999999999988
Q ss_pred HHHHHHHHHCCCCc-------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q psy8898 754 LDVLDTLLRLGAKV-------NLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802 (1236)
Q Consensus 754 ~~iv~~Ll~~ga~~-------n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 802 (1236)
.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+++..
T Consensus 198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 79999999999999 77999999999999999999999999999965543
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=6.2e-27 Score=258.53 Aligned_cols=187 Identities=23% Similarity=0.263 Sum_probs=170.9
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCCC--CccCCCCCCCHHHHHH-------HHHHHhcCC-CCcccCCCCCChhhhhccc
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGAN--VNVADLWKFTPLHEAA-------AKALLQHGA-DINLKNTDGKTALDLAVPC 613 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~~--v~~~d~~g~tpL~~a~-------~~~Ll~~g~-d~~~~~~~g~t~L~~a~~~ 613 (1236)
+++++|.|+..++.+.++.+++.+.+ +|..|..|+||||+|+ +++|++.|+ +++..|..|.||||+|+..
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 66889999999999999999988766 8999999999999998 679999998 9999999999999998611
Q ss_pred CcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhc
Q psy8898 614 TRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLT 693 (1236)
Q Consensus 614 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~ 693 (1236)
.+...++.+++++|++
T Consensus 156 ----------------------------------------------------------------~~~~~~~~~~v~~Ll~ 171 (276)
T 4hbd_A 156 ----------------------------------------------------------------TLKTQDDIETVLQLFR 171 (276)
T ss_dssp ----------------------------------------------------------------CCCSHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------HhhhhhhHHHHHHHHH
Confidence 0113466789999999
Q ss_pred cCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHH-CCCCccccCC
Q psy8898 694 SDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLR-LGAKVNLVDV 772 (1236)
Q Consensus 694 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~ga~~n~~d~ 772 (1236)
.+......+..|+||||+|+.. ++.+++++|+++|+|+|.+|..|+||||+|+..|+.++|++|++ .|++++.+|.
T Consensus 172 ~g~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~ 248 (276)
T 4hbd_A 172 LGNINAKASQAGQTALMLAVSH---GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR 248 (276)
T ss_dssp HSCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred cCCCccccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC
Confidence 9988888788899999999997 89999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8898 773 LGQTALHRTARDDKTQAVRVLLSHN 797 (1236)
Q Consensus 773 ~G~tpL~~A~~~~~~~iv~~Ll~~g 797 (1236)
.|+||||+|+..|+.+++++|++++
T Consensus 249 ~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 249 DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999999875
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.4e-28 Score=280.64 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=194.9
Q ss_pred hhhHHHhcCcCCcccc--CCchHHHHHHh-cCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q psy8898 197 PLALETVIMPSGQAVA--LGLVPLHNACS-YGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273 (1236)
Q Consensus 197 ~~~~~~~Ll~~g~~~~--~g~T~L~~Aa~-~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~ 273 (1236)
...++..+++...+.+ .+.+++++|+. .++.+++++|++.|++. +||||+|+..|+.++|++|+++|+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~ 118 (376)
T 2aja_A 46 YKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSD 118 (376)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcH
Confidence 3456777777776666 57788998887 57889999999887653 49999999999999999999988732
Q ss_pred CCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhH
Q psy8898 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEF 353 (1236)
Q Consensus 274 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~ 353 (1236)
...+.
T Consensus 119 ~~~~~--------------------------------------------------------------------------- 123 (376)
T 2aja_A 119 EIVKV--------------------------------------------------------------------------- 123 (376)
T ss_dssp SSCC----------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11100
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhhhhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCc---ccccC
Q psy8898 354 ITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHI---VNCRD 430 (1236)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~ 430 (1236)
....+.+||+.|+..|+.++|++|++.+ .+ .+..+
T Consensus 124 -----------------------------------------~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~i~~ 161 (376)
T 2aja_A 124 -----------------------------------------IQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQA 161 (376)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSH
T ss_pred -----------------------------------------hccCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccccCC
Confidence 0012345678888888888888888873 32 12222
Q ss_pred CCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHH-hcCchHHHhhcCCCCCCCCCchhHHHHHH
Q psy8898 431 LDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAA-QKGRTQLSALLPLSPSAANDPLRELFEAC 509 (1236)
Q Consensus 431 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~L~~A~-~~~~~~iv~~L~~~~~~~~~~~~~L~~A~ 509 (1236)
.+ +||||+|+..|+.++|++|+++|++++. ...|..|.||||+|+ .+|+.+++++|++.+.
T Consensus 162 ~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~--~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------------- 223 (376)
T 2aja_A 162 EN---YHAFRLAAENGHLHVLNRLCELAPTEAT--AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------------- 223 (376)
T ss_dssp HH---HHHHHHHHHTTCHHHHHHHHHSCGGGHH--HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------------
T ss_pred CC---CCHHHHHHHCCCHHHHHHHHHcCCccch--hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------------
Confidence 22 5999999999999999999999998742 014557889999998 8888888888755210
Q ss_pred hcCChHHHHHHhCCCCcccccccCCCCchhhhhccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHH
Q psy8898 510 KGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKAL 589 (1236)
Q Consensus 510 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~L 589 (1236)
.|.|||++|+..|+.+++++|+++|++++..+
T Consensus 224 ---------------------------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~--------------- 255 (376)
T 2aja_A 224 ---------------------------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH--------------- 255 (376)
T ss_dssp ---------------------------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH---------------
T ss_pred ---------------------------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc---------------
Confidence 26789999999999999999999887664332
Q ss_pred HhcCCCCcccCCCCCChhhhhcccCcccccCCchhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchh
Q psy8898 590 LQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKD 669 (1236)
Q Consensus 590 l~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1236)
++++.|+ ..|+.++++....
T Consensus 256 ---------------~~l~~A~------~~g~~~vv~~~~~--------------------------------------- 275 (376)
T 2aja_A 256 ---------------DAFKLSN------PDGVFDLVTKSEC--------------------------------------- 275 (376)
T ss_dssp ---------------TTTTTTS------SSSCCCCSSHHHH---------------------------------------
T ss_pred ---------------HHHHHHH------HCCChhhhcHHhh---------------------------------------
Confidence 2444443 2333332211100
Q ss_pred hccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHH---------cCCCCCCCCCC
Q psy8898 670 EFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR---------KGAHLNEKNKE 740 (1236)
Q Consensus 670 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~---------~gadin~~d~~ 740 (1236)
.. ...+++.|+..+. .+..+.+++|++ .|+++| .
T Consensus 276 ----~~--------~~~~~~~li~~~~---------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n----~ 318 (376)
T 2aja_A 276 ----LQ--------GFYMLRNLIRRND---------------------EVLLDDIRFLLSIPGIKALAPTATIPG----D 318 (376)
T ss_dssp ----HH--------HHHHHHHHHHHCC---------------------GGGHHHHHHHHTSTTTGGGSSCCSSTT----C
T ss_pred ----hh--------hHHHHHHHHHcch---------------------hhHHHHHHHHHhChhhhhhhccCCCCC----C
Confidence 00 0012333333321 023555666654 455554 4
Q ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8898 741 LLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796 (1236)
Q Consensus 741 G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ 796 (1236)
+.||||+|++.|+.++|++|++.| ...|..|.||+.+|-..|+.+++++-+.+
T Consensus 319 ~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 319 ANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp CCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred ccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence 569999999999999999999875 56788999999999999999998876554
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=1.4e-26 Score=241.14 Aligned_cols=164 Identities=23% Similarity=0.249 Sum_probs=149.9
Q ss_pred CccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCC
Q psy8898 16 SIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGG 95 (1236)
Q Consensus 16 ~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 95 (1236)
.+|.+|..|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------------- 86 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK-------------------- 86 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHH--------------------
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHH--------------------
Confidence 467789999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q psy8898 96 TGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPP 175 (1236)
Q Consensus 96 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1236)
|+++|++++..+..|.||||+|+..++.++++.|++.....
T Consensus 87 -----------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------------------- 127 (192)
T 2rfm_A 87 -----------LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV---------------------------- 127 (192)
T ss_dssp -----------HHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS----------------------------
T ss_pred -----------HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC----------------------------
Confidence 99999999999999999999999999999999888753110
Q ss_pred CCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy8898 176 PAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAA 255 (1236)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~ 255 (1236)
......|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 128 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 175 (192)
T 2rfm_A 128 --------------------------------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175 (192)
T ss_dssp --------------------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred --------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 001114899999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhCC
Q psy8898 256 SKSRLEVCSLLLSEG 270 (1236)
Q Consensus 256 ~~g~~~iv~~Ll~~g 270 (1236)
..|+.+++++|+++|
T Consensus 176 ~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 176 IFGRQEVIKIFTEVR 190 (192)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHhcc
Confidence 999999999999864
No 57
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=6.4e-29 Score=283.34 Aligned_cols=279 Identities=13% Similarity=0.022 Sum_probs=178.0
Q ss_pred CcHHHHHHHHHcCCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHhCCCceEEeeec
Q psy8898 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANP---NTRDNWNFTPLHEAAAKGKTDVCIGIYF 78 (1236)
Q Consensus 2 G~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~---n~~d~~g~t~L~~A~~~g~~~iv~~Ll~ 78 (1236)
++.+++++|+++|++. +||||+||+.|+.++|++|+++|+.. +..+..|.||||+|+.+|+.++|++
T Consensus 77 ~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~--- 146 (376)
T 2aja_A 77 NAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR--- 146 (376)
T ss_dssp TCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHH---
T ss_pred CCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHH---
Confidence 5667788888877654 59999999999999999999999832 3445568899999999999999988
Q ss_pred cccCccccccccccCCCCCCCCCcchhHHHhcCCCC---CCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCC
Q psy8898 79 AEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADP---FLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETAS 155 (1236)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~ 155 (1236)
|+++|+++ +..+.+ +||||+|+..|+.++|+.|++.
T Consensus 147 ----------------------------Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~------------ 185 (376)
T 2aja_A 147 ----------------------------LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL------------ 185 (376)
T ss_dssp ----------------------------HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS------------
T ss_pred ----------------------------HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc------------
Confidence 99999863 333334 8999999999999998888764
Q ss_pred CCCCCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCcc-----cc-CCchHHHHHH-hcCcHH
Q psy8898 156 VPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQA-----VA-LGLVPLHNAC-SYGHFE 228 (1236)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~-----~~-~g~T~L~~Aa-~~g~~~ 228 (1236)
|++ .+ .|.||||+|| ..|+.+
T Consensus 186 ----------------------------------------------------ga~~~~~~~d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 186 ----------------------------------------------------APTEATAMIQAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp ----------------------------------------------------CGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred ----------------------------------------------------CCccchhccCCCCCCHHHHHHHHCCCHH
Confidence 333 11 4889999999 999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHH
Q psy8898 229 VTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEA 308 (1236)
Q Consensus 229 iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A 308 (1236)
+|++|++.|+ .|.||||+|+..|+.+++++|+++|++++..+. + +..|
T Consensus 214 iv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~---------------------l~~A 261 (376)
T 2aja_A 214 VINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----A---------------------FKLS 261 (376)
T ss_dssp HHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----T---------------------TTTT
T ss_pred HHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----H---------------------HHHH
Confidence 9999999774 278999999999999999999999887654332 2 3445
Q ss_pred HHcCChHHHHHhhhcccccCCCCCCCCCCCchhHHHHHhhcChhHHHHHHHHHHHhhhhccCCCCCCccHHHHhhhhhhh
Q psy8898 309 CRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKK 388 (1236)
Q Consensus 309 ~~~g~~~~v~~ll~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 388 (1236)
+..|+.+++...-.... ...+.
T Consensus 262 ~~~g~~~vv~~~~~~~~-------------------------~~~~~--------------------------------- 283 (376)
T 2aja_A 262 NPDGVFDLVTKSECLQG-------------------------FYMLR--------------------------------- 283 (376)
T ss_dssp SSSSCCCCSSHHHHHHH-------------------------HHHHH---------------------------------
T ss_pred HHCCChhhhcHHhhhhh-------------------------HHHHH---------------------------------
Confidence 55666554421100000 00000
Q ss_pred hhcCCCCcCchhhHHHHHHhCCCHHHHHHHHhhCCCcccc--cCCCCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q psy8898 389 LLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNC--RDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN 466 (1236)
Q Consensus 389 ~l~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~ 466 (1236)
.|..+...+..+.+++|++........ ....+.+.||||+|+..|+.++|++|++.| .
T Consensus 284 -------------~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-------~ 343 (376)
T 2aja_A 284 -------------NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-------S 343 (376)
T ss_dssp -------------HHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH-------H
T ss_pred -------------HHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh-------H
Confidence 011111223466677777642211110 011122358999999999999999999976 3
Q ss_pred CCccCCCChHHHHHhcCchHHHhhcCC
Q psy8898 467 ATDKWGFTPLHEAAQKGRTQLSALLPL 493 (1236)
Q Consensus 467 ~~d~~g~t~L~~A~~~~~~~iv~~L~~ 493 (1236)
..+..++|++.+|-.+|+.++++.-.+
T Consensus 344 v~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 344 VLALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp HHHSCC---------------------
T ss_pred HHHHHHHhccccccccccccHHHHHHH
Confidence 445578899999999999998877643
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=4e-25 Score=224.69 Aligned_cols=157 Identities=31% Similarity=0.397 Sum_probs=140.3
Q ss_pred ccchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCc
Q psy8898 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDH 622 (1236)
Q Consensus 543 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~ 622 (1236)
.+.|+|+.|+..|+.+++++|+++|++++..|..|.||
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~------------------------------------------ 50 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTP------------------------------------------ 50 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH------------------------------------------
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH------------------------------------------
Confidence 37899999999999999999999998877665444433
Q ss_pred hhHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCC
Q psy8898 623 KKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHP 702 (1236)
Q Consensus 623 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 702 (1236)
||.|+..|+.+++++|++.+......+
T Consensus 51 -----------------------------------------------------L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 77 (169)
T 2y1l_E 51 -----------------------------------------------------LHLAAFNGHLEIVEVLLKNGADVNAVD 77 (169)
T ss_dssp -----------------------------------------------------HHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred -----------------------------------------------------HHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 334466788889999998887777777
Q ss_pred CCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHH
Q psy8898 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTA 782 (1236)
Q Consensus 703 ~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~ 782 (1236)
..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.|+.++|++|+++|++++.+|..|.|||++|+
T Consensus 78 ~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 154 (169)
T 2y1l_E 78 HAGMTPLRLAALF---GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154 (169)
T ss_dssp TTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 7799999999997 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCC
Q psy8898 783 RDDKTQAVRVLLSHN 797 (1236)
Q Consensus 783 ~~~~~~iv~~Ll~~g 797 (1236)
..|+.+++++|+++|
T Consensus 155 ~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 155 DNGNEDLAEILQKLN 169 (169)
T ss_dssp HTTCHHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHcC
Confidence 999999999999986
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=2.8e-26 Score=234.24 Aligned_cols=169 Identities=21% Similarity=0.212 Sum_probs=145.4
Q ss_pred CcchhhHHhhcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEADAN-PNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~ga~-~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
+.||||.||..|+.++|+.|++.|.+ ++..|..|+||||+|+..|+.+++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------------------------- 54 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRF--------------------------- 54 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHH---------------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHH---------------------------
Confidence 56899999999999999999999987 89999999999999999999999988
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++..+..|.||||+|+..++.++++.|++.....
T Consensus 55 ----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------------- 95 (172)
T 3v30_A 55 ----LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI----------------------------------- 95 (172)
T ss_dssp ----HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-----------------------------------
T ss_pred ----HHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-----------------------------------
Confidence 99999999999999999999999999999999888642110
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~i 262 (1236)
......|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus 96 -------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 96 -------------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp -------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred -------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence 0011148999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCc
Q psy8898 263 CSLLLSEGADPTLHNCHSKSA 283 (1236)
Q Consensus 263 v~~Ll~~ga~~~~~~~~g~t~ 283 (1236)
+++|+++|+++...+..+.||
T Consensus 151 ~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 151 QQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHhcccCCCCCC
Confidence 999999999998888887776
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=1.8e-25 Score=225.70 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=137.7
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCch
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHK 623 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~ 623 (1236)
..|||+.|+..|+.+++++|+++|++++..|.. |+||||+|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------------------g~t~L~~A------------- 45 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGF--------------------------GRTALQVM------------- 45 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT--------------------------SCCHHHHC-------------
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCcc--------------------------CccHHHHH-------------
Confidence 568999999999999999999988877665544 44444444
Q ss_pred hHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCC
Q psy8898 624 KEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPY 703 (1236)
Q Consensus 624 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 703 (1236)
+. |+.+++++|++.+......+.
T Consensus 46 --------------------------------------------------------~~-~~~~~v~~Ll~~g~~~~~~~~ 68 (162)
T 1ihb_A 46 --------------------------------------------------------KL-GNPEIARRLLLRGANPDLKDR 68 (162)
T ss_dssp --------------------------------------------------------CS-SCHHHHHHHHHTTCCTTCCCT
T ss_pred --------------------------------------------------------Hc-CcHHHHHHHHHcCCCCCCCCC
Confidence 34 777888888888877777777
Q ss_pred CCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCC-ccccCCCCCcHHHHHH
Q psy8898 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK-VNLVDVLGQTALHRTA 782 (1236)
Q Consensus 704 ~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~-~n~~d~~G~tpL~~A~ 782 (1236)
.|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.|+.+++++|+++|++ ++.+|..|.||||+|+
T Consensus 69 ~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 69 TGFAVIHDAARA---GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp TSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 799999999987 789999999999999999999999999999999999999999999998 6999999999999999
Q ss_pred HcCCHHHHHHHHhCCCC
Q psy8898 783 RDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 783 ~~~~~~iv~~Ll~~ga~ 799 (1236)
..|+.+++++|+++||+
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 99999999999999986
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=1.9e-26 Score=253.43 Aligned_cols=208 Identities=19% Similarity=0.171 Sum_probs=168.1
Q ss_pred CCCCcchhhHHhhcCCHHHH----HHHHHCCCCCCCCC----CCCCCHHHHHH---HhCCCceEEeeeccccCccccccc
Q psy8898 21 DDGGLHPLHNACSFGHADVV----RLLLEADANPNTRD----NWNFTPLHEAA---AKGKTDVCIGIYFAEHSSKSNQYV 89 (1236)
Q Consensus 21 d~~g~t~L~~A~~~g~~~iv----~~Ll~~ga~~n~~d----~~g~t~L~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~ 89 (1236)
+..|+||||.||+.|+.+.| ++|++.|++++..+ ..|+||||+|+ ..|+.+++++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~-------------- 67 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI-------------- 67 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHH--------------
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHH--------------
Confidence 45789999999999999954 45555999999766 77999999999 7799999988
Q ss_pred cccCCCCCCCCCcchhHHHhcCCC-----------CCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy8898 90 YGIGGGTGCPMHKDRSCYLAHGAD-----------PFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPP 158 (1236)
Q Consensus 90 ~~~~~~~~~~~~~~v~~Ll~~ga~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 158 (1236)
|+++|++ ++..|..|+||||+|+..|+.++|+.|++............ ...
T Consensus 68 -----------------Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~~~ 129 (260)
T 3jxi_A 68 -----------------LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR-FFQ 129 (260)
T ss_dssp -----------------HHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEEC-CCS
T ss_pred -----------------HHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccc-ccC
Confidence 8887744 45566699999999999999999999998642211111000 000
Q ss_pred CCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHh---
Q psy8898 159 PSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIK--- 235 (1236)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~--- 235 (1236)
+ .+.+.....|.||||+|+..|+.++|++|++
T Consensus 130 ~---------------------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 130 P---------------------------------------------KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp S---------------------------------------------SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred c---------------------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 0 0111222359999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHhCCCCC-------CCCCCCCCCccccccchhHHHHhhhc
Q psy8898 236 AGANVNAMDLWQFTPLHEAASKSR---------LEVCSLLLSEGADP-------TLHNCHSKSAIDVAPTRELQQRLSNE 299 (1236)
Q Consensus 236 ~ga~~n~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~~~~~~~ 299 (1236)
.|+++|.+|..|+||||+|+..++ .+++++|+++|+++ +..|..|.||
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp---------------- 228 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP---------------- 228 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH----------------
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH----------------
Confidence 999999999999999999998887 79999999999998 6688888888
Q ss_pred cCcchHHHHHHcCChHHHHHhhhcccc
Q psy8898 300 FKGHCLLEACRQGDPSRVKKFLTSDVV 326 (1236)
Q Consensus 300 ~~~~~l~~A~~~g~~~~v~~ll~~~~~ 326 (1236)
|+.|+..|+.+++++|++++..
T Consensus 229 -----L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 -----LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHhCCC
Confidence 6778999999999999987653
No 62
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.92 E-value=8.3e-26 Score=249.51 Aligned_cols=190 Identities=22% Similarity=0.185 Sum_probs=169.3
Q ss_pred CcchhhHHhhcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCC
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEADAN--PNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH 101 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~ga~--~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1236)
+++++|.|+..|+.+.++.|++.+.+ +|..|..|+||||+|+..|+.+++++
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~-------------------------- 129 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQ-------------------------- 129 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHH--------------------------
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHH--------------------------
Confidence 57899999999999999999988776 89999999999999999999999988
Q ss_pred cchhHHHhcCC-CCCCcccCCCCcchhhc-----ccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q psy8898 102 KDRSCYLAHGA-DPFLKNQEGQTPLDLTV-----AEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPP 175 (1236)
Q Consensus 102 ~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~-----~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1236)
|+++|+ +++..+..|.||||+|+ ..++.++++.+++.....
T Consensus 130 -----Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~---------------------------- 176 (276)
T 4hbd_A 130 -----LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN---------------------------- 176 (276)
T ss_dssp -----HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT----------------------------
T ss_pred -----HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc----------------------------
Confidence 999998 99999999999999999 668888888887653110
Q ss_pred CCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy8898 176 PAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAA 255 (1236)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~ 255 (1236)
......|+||||+||..|+.++|++|+++|+++|.+|.+|+||||+|+
T Consensus 177 --------------------------------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~ 224 (276)
T 4hbd_A 177 --------------------------------AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC 224 (276)
T ss_dssp --------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred --------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 000114899999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHh-CCCCCCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHHhhhccc
Q psy8898 256 SKSRLEVCSLLLS-EGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV 325 (1236)
Q Consensus 256 ~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~ 325 (1236)
..|+.++|++|++ .|++++.+|..|.|| |+.|+..|+.+++++|+++..
T Consensus 225 ~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp---------------------L~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 225 EHGHKEIAGLLLAVPSCDISLTDRDGSTA---------------------LMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHTCHHHHHHHHTSTTCCTTCCCTTSCCH---------------------HHHHHHHTCHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHhcCCCCCcCcCCCCCCH---------------------HHHHHHcCCHHHHHHHHhccC
Confidence 9999999999999 899999999999998 677899999999999998643
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=9.3e-26 Score=227.85 Aligned_cols=158 Identities=26% Similarity=0.289 Sum_probs=139.6
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
...||||.|+..|+.++|++|+++|++++..|..|+||||+|+. |+.+++++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~--------------------------- 55 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARR--------------------------- 55 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHH---------------------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHH---------------------------
Confidence 46789999999999999999999999999999999999999999 99999988
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++.++..|.||||+|+..|+.++++.|++.....
T Consensus 56 ----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------------- 96 (162)
T 1ihb_A 56 ----LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV----------------------------------- 96 (162)
T ss_dssp ----HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------------------
T ss_pred ----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------------
Confidence 99999999999999999999999999999999888753110
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGAN-VNAMDLWQFTPLHEAASKSRLE 261 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~-~n~~d~~g~TpL~~A~~~g~~~ 261 (1236)
......|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..|+.+
T Consensus 97 -------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~ 151 (162)
T 1ihb_A 97 -------------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151 (162)
T ss_dssp -------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred -------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 00111488999999999999999999999998 6999999999999999999999
Q ss_pred HHHHHHhCCCC
Q psy8898 262 VCSLLLSEGAD 272 (1236)
Q Consensus 262 iv~~Ll~~ga~ 272 (1236)
++++|+++|||
T Consensus 152 ~~~~Ll~~GAd 162 (162)
T 1ihb_A 152 VVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhCCC
Confidence 99999999986
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=3.7e-25 Score=224.65 Aligned_cols=158 Identities=20% Similarity=0.195 Sum_probs=140.7
Q ss_pred cchhHHHHHhcCcHHHHHHHHhCCCCCccCCCCCCCHHHHHHHHHHHhcCCCCcccCCCCCChhhhhcccCcccccCCch
Q psy8898 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHK 623 (1236)
Q Consensus 544 g~t~L~~A~~~g~~~iv~~Ll~~g~~v~~~d~~g~tpL~~a~~~~Ll~~g~d~~~~~~~g~t~L~~a~~~~~~~~~~~~~ 623 (1236)
|.||||.|+..|+.+++++|++.|++++..|..|.|||
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L------------------------------------------ 40 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL------------------------------------------ 40 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHH------------------------------------------
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHH------------------------------------------
Confidence 78999999999999999999998887766655444433
Q ss_pred hHHHHHHHHHhCCCcccccCCCCCCCCCcccccccccccccccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCC
Q psy8898 624 KEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPY 703 (1236)
Q Consensus 624 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 703 (1236)
|.|+..|+.+++++|++.+......+.
T Consensus 41 -----------------------------------------------------~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 67 (167)
T 3v31_A 41 -----------------------------------------------------MWAAAHGQIAVVEFLLQNGADPQLLGK 67 (167)
T ss_dssp -----------------------------------------------------HHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred -----------------------------------------------------HHHHHCCCHHHHHHHHHcCCCCCCcCC
Confidence 344667888899999988877776777
Q ss_pred CCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8898 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783 (1236)
Q Consensus 704 ~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~ 783 (1236)
.|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.
T Consensus 68 ~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 68 GRESALSLACSK---GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144 (167)
T ss_dssp TCCCHHHHHHHH---TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHc---CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 799999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCC
Q psy8898 784 DDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 784 ~~~~~iv~~Ll~~ga~ 799 (1236)
.|+.+++++|++++++
T Consensus 145 ~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 145 LGYRSVQQVIESHLLK 160 (167)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999998754
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=2.1e-25 Score=226.79 Aligned_cols=159 Identities=28% Similarity=0.378 Sum_probs=142.8
Q ss_pred CCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCC
Q psy8898 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100 (1236)
Q Consensus 21 d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 100 (1236)
...+.|||+.||+.|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------- 65 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV------------------------- 65 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-------------------------
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH-------------------------
Confidence 4567899999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccC
Q psy8898 101 HKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180 (1236)
Q Consensus 101 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1236)
|+++|++++..+..|.||||+|+..|+.++++.|++.....
T Consensus 66 ------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------------------------------- 106 (169)
T 2y1l_E 66 ------LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV--------------------------------- 106 (169)
T ss_dssp ------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------------------
T ss_pred ------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------
Confidence 99999999999999999999999999999999888753110
Q ss_pred CCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q psy8898 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260 (1236)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~ 260 (1236)
......|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 107 ---------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 159 (169)
T 2y1l_E 107 ---------------------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159 (169)
T ss_dssp ---------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred ---------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 00111488999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q psy8898 261 EVCSLLLSEG 270 (1236)
Q Consensus 261 ~iv~~Ll~~g 270 (1236)
+++++|++.|
T Consensus 160 ~~~~~L~~~G 169 (169)
T 2y1l_E 160 DLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHcC
Confidence 9999999976
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.92 E-value=3.3e-25 Score=230.76 Aligned_cols=119 Identities=22% Similarity=0.343 Sum_probs=109.3
Q ss_pred HHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHH
Q psy8898 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD 755 (1236)
Q Consensus 676 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~ 755 (1236)
||+|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 72 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 148 (192)
T 2rfm_A 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF---GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 3344667888889999988877777777799999999987 7899999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8898 756 VLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797 (1236)
Q Consensus 756 iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~g 797 (1236)
+|++|+++|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus 149 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999875
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.5e-27 Score=254.93 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=164.7
Q ss_pred HHHHHHcCCCcccc---CCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCc
Q psy8898 7 VEYLLASGASIHAR---DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSS 83 (1236)
Q Consensus 7 v~~Ll~~ga~~n~~---d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 83 (1236)
|+.|+++|++++.. +.+|.||||.||..|+.++|++|+++|+++|..|..|+||||+|+..|+.+++++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~-------- 72 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF-------- 72 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHH--------
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH--------
Confidence 57899999998754 4567788999999999999999999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q psy8898 84 KSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYS 163 (1236)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (1236)
|+++|++++.+|..|+||||+|+..|+.++++.|++.......
T Consensus 73 -----------------------Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-------------- 115 (229)
T 2vge_A 73 -----------------------LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-------------- 115 (229)
T ss_dssp -----------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--------------
T ss_pred -----------------------HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--------------
Confidence 9999999999999999999999999999998888864311000
Q ss_pred ccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHH--HhcCcHHHHHHHHhcCCCCC
Q psy8898 164 NTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNA--CSYGHFEVTEMLIKAGANVN 241 (1236)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~A--a~~g~~~iv~~Ll~~ga~~n 241 (1236)
.+...|+||||+| +..|+.+++++|++.|++++
T Consensus 116 ---------------------------------------------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~ 150 (229)
T 2vge_A 116 ---------------------------------------------TTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150 (229)
T ss_dssp ---------------------------------------------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence 0001488999999 89999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCCCccccccchhHHHHhhhccCcchHHHHHHcCChHHHHH
Q psy8898 242 AMDLWQFTPLHEAASKSRLEVCSLLLSEGAD--PTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKK 319 (1236)
Q Consensus 242 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ 319 (1236)
..|..|.|||+.++..+ .+++|++.|++ ++.+|..|+||||+| +..|+.++|+.
T Consensus 151 ~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A---------------------~~~g~~~~v~~ 206 (229)
T 2vge_A 151 LMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWA---------------------ALHGQEGYVPR 206 (229)
T ss_dssp TSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEE---------------------EETTEEEEEEG
T ss_pred cccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHH---------------------HHcCCcceeeh
Confidence 99999999998766554 33678888888 667888899998875 56778888877
Q ss_pred hhhcccccCC
Q psy8898 320 FLTSDVVNFK 329 (1236)
Q Consensus 320 ll~~~~~~~~ 329 (1236)
.+-...+..+
T Consensus 207 ~~l~~~p~~~ 216 (229)
T 2vge_A 207 NYFGLFPRVK 216 (229)
T ss_dssp GGEESSCCCC
T ss_pred hhhhhCCCCC
Confidence 6655444443
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=8.5e-25 Score=223.18 Aligned_cols=129 Identities=18% Similarity=0.117 Sum_probs=116.3
Q ss_pred ccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhC
Q psy8898 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLG 752 (1236)
Q Consensus 673 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g 752 (1236)
.||||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG---GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3344455778889999999998887777777899999999997 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q psy8898 753 HLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804 (1236)
Q Consensus 753 ~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 804 (1236)
+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....+
T Consensus 114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165 (172)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999998766554
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=1.3e-24 Score=220.46 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=120.3
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
+|.||||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------------------------- 54 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF--------------------------- 54 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHH---------------------------
Confidence 58899999999999999999999999999999999999999999999999988
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++..+..|.||||+|+..++.++++.|++......
T Consensus 55 ----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------------------------- 96 (167)
T 3v31_A 55 ----LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN---------------------------------- 96 (167)
T ss_dssp ----HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------------------------------
T ss_pred ----HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----------------------------------
Confidence 999999999888877777777777666666666665421100
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~i 262 (1236)
.....|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus 97 --------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 97 --------------------------EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp --------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred --------------------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 000136666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCC
Q psy8898 263 CSLLLSEGA 271 (1236)
Q Consensus 263 v~~Ll~~ga 271 (1236)
+++|+++++
T Consensus 151 ~~~L~~~~~ 159 (167)
T 3v31_A 151 QQVIESHLL 159 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=4.7e-25 Score=226.63 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=147.5
Q ss_pred CCCcchhhHHhhcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCC
Q psy8898 22 DGGLHPLHNACSFGHADVVRLLLEA-DANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100 (1236)
Q Consensus 22 ~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 100 (1236)
.++.+|||.||..|+.++|++|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------- 57 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM------------------------- 57 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHH-------------------------
Confidence 4688999999999999999999998 67899999999999999999999999988
Q ss_pred CcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccC
Q psy8898 101 HKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180 (1236)
Q Consensus 101 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1236)
|+++|++++..+..|.||||+|+..|+.++++.|++.....
T Consensus 58 ------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------------------------- 98 (179)
T 3f6q_A 58 ------LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI--------------------------------- 98 (179)
T ss_dssp ------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------------------
T ss_pred ------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------
Confidence 99999999999999999999999999999999888753110
Q ss_pred CCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q psy8898 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260 (1236)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~ 260 (1236)
......|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.
T Consensus 99 ---------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 151 (179)
T 3f6q_A 99 ---------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151 (179)
T ss_dssp ---------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred ---------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH
Confidence 00111589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCC
Q psy8898 261 EVCSLLLSEGADPTLHNCHS 280 (1236)
Q Consensus 261 ~iv~~Ll~~ga~~~~~~~~g 280 (1236)
+++++|+++|++++..+..+
T Consensus 152 ~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 152 LLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHhhcCcccCCccc
Confidence 99999999999998776543
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=5.9e-24 Score=212.07 Aligned_cols=117 Identities=26% Similarity=0.370 Sum_probs=107.7
Q ss_pred cHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCC
Q psy8898 674 HCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGH 753 (1236)
Q Consensus 674 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~ 753 (1236)
||||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 36 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 112 (153)
T 1awc_B 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE---GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112 (153)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH---TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 344455778889999999998887777777799999999987 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy8898 754 LDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793 (1236)
Q Consensus 754 ~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~L 793 (1236)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 113 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999999999999999999999987
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=3.1e-24 Score=220.52 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=117.1
Q ss_pred HHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCH
Q psy8898 675 CLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL 754 (1236)
Q Consensus 675 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~ 754 (1236)
|||.||..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 118 (179)
T 3f6q_A 42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH---GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 34444677888999999999887777777899999999997 889999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q psy8898 755 DVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804 (1236)
Q Consensus 755 ~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 804 (1236)
+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++++...
T Consensus 119 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp HHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred HHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence 99999999999999999999999999999999999999999999998764
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=4.6e-24 Score=212.86 Aligned_cols=87 Identities=24% Similarity=0.270 Sum_probs=71.8
Q ss_pred CcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCcc
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKD 103 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1236)
+.||||.|+..|+.++|++|+++|++++ .|..|.||||+|+..|+.+++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~---------------------------- 52 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEV---------------------------- 52 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHH----------------------------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHH----------------------------
Confidence 4689999999999999999999999887 58889999999999999999988
Q ss_pred hhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHh
Q psy8898 104 RSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMA 142 (1236)
Q Consensus 104 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~ 142 (1236)
|+++|++++.++..|+||||+|+..|+.++++.|++
T Consensus 53 ---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 88 (153)
T 1awc_B 53 ---LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88 (153)
T ss_dssp ---HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred ---HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH
Confidence 999999998877776666666665555555555443
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=4.4e-24 Score=216.14 Aligned_cols=122 Identities=25% Similarity=0.241 Sum_probs=111.3
Q ss_pred ccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhC
Q psy8898 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLG 752 (1236)
Q Consensus 673 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g 752 (1236)
.||||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 43 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 119 (165)
T 3twr_A 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY---GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc---CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence 3455556778999999999999888777777899999999997 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8898 753 HLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798 (1236)
Q Consensus 753 ~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga 798 (1236)
+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+++||
T Consensus 120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999999999999999999999877 99999999999986
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.4e-26 Score=247.30 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=84.6
Q ss_pred HHcCCHHHHHHhhccCCcccCCC-CCCChHHHHH--hhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHH
Q psy8898 680 CRQGDPSRVKKFLTSDVVNFKHP-YTGDTPLHCA--VTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756 (1236)
Q Consensus 680 ~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~i 756 (1236)
+..|+.+++++|++.+......+ ..|+||||+| +.. ++.+++++|+++|++++.+|..|.||++.++..+.
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~---~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~--- 168 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE---GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG--- 168 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST---THHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc---ChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---
Confidence 45566666666666665544443 3577777777 554 89999999999999999999999999996655543
Q ss_pred HHHHHHCCCC--ccccCCCCCcHHHHHHHcCCHHHHHH
Q psy8898 757 LDTLLRLGAK--VNLVDVLGQTALHRTARDDKTQAVRV 792 (1236)
Q Consensus 757 v~~Ll~~ga~--~n~~d~~G~tpL~~A~~~~~~~iv~~ 792 (1236)
+++|++.|++ ++.+|.+|+||||+|+.+|+.++|+.
T Consensus 169 ~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 3688899998 77889999999999999999998864
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=1.1e-24 Score=220.73 Aligned_cols=160 Identities=24% Similarity=0.288 Sum_probs=137.2
Q ss_pred cCCCCcchhhHHhhcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCC
Q psy8898 20 RDDGGLHPLHNACSFGHADVVRLLLE-ADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGC 98 (1236)
Q Consensus 20 ~d~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~ 98 (1236)
.|.+|.||||.|+..|+.++|+.|++ .+.+++..+..|.||||+|+..|+.+++++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------------- 60 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY----------------------- 60 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHH-----------------------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHH-----------------------
Confidence 46788999999999999999999998 456788999999999999999999999988
Q ss_pred CCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCc
Q psy8898 99 PMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQ 178 (1236)
Q Consensus 99 ~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1236)
|+++|++++.+|..|+||||+|+..++.++++.|++.....
T Consensus 61 --------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------- 101 (165)
T 3twr_A 61 --------LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV------------------------------- 101 (165)
T ss_dssp --------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------------------
T ss_pred --------HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-------------------------------
Confidence 99999999999999999999999999999988888642110
Q ss_pred cCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q psy8898 179 YSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS 258 (1236)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g 258 (1236)
......|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+. |
T Consensus 102 -----------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~ 151 (165)
T 3twr_A 102 -----------------------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-G 151 (165)
T ss_dssp -----------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-T
T ss_pred -----------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-C
Confidence 0001148899999999999999999999999999999999999999776 8
Q ss_pred cHHHHHHHHhCCC
Q psy8898 259 RLEVCSLLLSEGA 271 (1236)
Q Consensus 259 ~~~iv~~Ll~~ga 271 (1236)
+.+++++|+++|+
T Consensus 152 ~~~i~~~L~~~gA 164 (165)
T 3twr_A 152 DTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHHTC--
T ss_pred ChHHHHHHhhccc
Confidence 8899999999875
No 77
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=3.9e-24 Score=208.40 Aligned_cols=135 Identities=27% Similarity=0.413 Sum_probs=123.9
Q ss_pred CCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccC
Q psy8898 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 14 ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
++++|.+|..|+||||+||..|+.++|++|+++|++++..|..|+||||+|+. |+.+++++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~------------------ 62 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL------------------ 62 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHH------------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHH------------------
Confidence 57899999999999999999999999999999999999999999999999999 99999988
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++.++..
T Consensus 63 -------------Ll~~g~~~~~~~~~----------------------------------------------------- 76 (136)
T 1d9s_A 63 -------------LLLHGAEPNCADPA----------------------------------------------------- 76 (136)
T ss_dssp -------------HHHHTCCSSCCBTT-----------------------------------------------------
T ss_pred -------------HHHCCCCCCCcCCC-----------------------------------------------------
Confidence 99999998876553
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~ 253 (1236)
.|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 77 ---------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 117 (136)
T 1d9s_A 77 ---------------------------------------TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117 (136)
T ss_dssp ---------------------------------------TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred ---------------------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 05568888888999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhCCCC
Q psy8898 254 AASKSRLEVCSLLLSEGAD 272 (1236)
Q Consensus 254 A~~~g~~~iv~~Ll~~ga~ 272 (1236)
|+..|+.+++++|+++|+|
T Consensus 118 A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 118 AEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHTCHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999986
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=4.1e-23 Score=206.87 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=104.6
Q ss_pred HcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy8898 681 RQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTL 760 (1236)
Q Consensus 681 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~L 760 (1236)
..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++.|+.++|++|
T Consensus 44 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 120 (156)
T 1bd8_A 44 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAART---GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120 (156)
T ss_dssp CTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHH
Confidence 35778888899988877777777799999999997 899999999999999999999999999999999999999999
Q ss_pred HHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8898 761 LRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796 (1236)
Q Consensus 761 l~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ 796 (1236)
+++ ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 121 l~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 121 AAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred Hhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999 99999999999999999999999999999975
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=1e-24 Score=235.53 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=116.5
Q ss_pred CCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCC
Q psy8898 22 DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH 101 (1236)
Q Consensus 22 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1236)
..|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~-------------------------- 55 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQR-------------------------- 55 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHH--------------------------
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHH--------------------------
Confidence 46899999999999999999999999999865 678999999999999999988
Q ss_pred cchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCC
Q psy8898 102 KDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSG 181 (1236)
Q Consensus 102 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1236)
|+++|++++.+|..|.||||+|+..|+.++++.|++..... +
T Consensus 56 -----Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------~--------------- 97 (239)
T 1ycs_B 56 -----IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV------------------N--------------- 97 (239)
T ss_dssp -----HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------------------T---------------
T ss_pred -----HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------------C---------------
Confidence 99999999999999999999999999999999888753110 0
Q ss_pred CCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHcC
Q psy8898 182 SGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQF-TPLHEA--ASKS 258 (1236)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~-TpL~~A--~~~g 258 (1236)
.....|+||||+||..|+.++|++|+++|++++..+..|. ||||+| +..|
T Consensus 98 ---------------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 98 ---------------------------AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp ---------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred ---------------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence 0111589999999999999999999999999999998887 999999 8889
Q ss_pred cHHHHHHHHhCCCCCCCCCCC
Q psy8898 259 RLEVCSLLLSEGADPTLHNCH 279 (1236)
Q Consensus 259 ~~~iv~~Ll~~ga~~~~~~~~ 279 (1236)
+.+++++|+++|++++..+..
T Consensus 151 ~~~~~~~Ll~~~a~~~~~~~~ 171 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIMNKG 171 (239)
T ss_dssp CCCHHHHHHHHHHHTTTTGGG
T ss_pred cHHHHHHHHHhhhcccccccc
Confidence 999999999999999887443
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=6.3e-24 Score=212.49 Aligned_cols=145 Identities=26% Similarity=0.360 Sum_probs=113.1
Q ss_pred ccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCC
Q psy8898 17 IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGT 96 (1236)
Q Consensus 17 ~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~ 96 (1236)
.+..+..|.||||+||..|+.++|++|+++|++++..|..|+||||+|+ .|+.+++++
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~--------------------- 62 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAEL--------------------- 62 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHH---------------------
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHH---------------------
Confidence 3456778999999999999999999999999999999999999999985 889999887
Q ss_pred CCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCC
Q psy8898 97 GCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPP 176 (1236)
Q Consensus 97 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1236)
|+++|++++.++..
T Consensus 63 ----------Ll~~g~~~~~~d~~-------------------------------------------------------- 76 (156)
T 1bi7_B 63 ----------LLLHGAEPNCADPA-------------------------------------------------------- 76 (156)
T ss_dssp ----------HHTTTCCCCCCCTT--------------------------------------------------------
T ss_pred ----------HHHcCCCCCCcCCC--------------------------------------------------------
Confidence 89999988866554
Q ss_pred CccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCch-HHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy8898 177 AQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLV-PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAA 255 (1236)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T-~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~ 255 (1236)
|+| |||+|+..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus 77 -------------------------------------g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 119 (156)
T 1bi7_B 77 -------------------------------------TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119 (156)
T ss_dssp -------------------------------------TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH
T ss_pred -------------------------------------CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 455 888888899999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhCCCCCCCCCCCCCCcccc
Q psy8898 256 SKSRLEVCSLLLSEGADPTLHNCHSKSAIDV 286 (1236)
Q Consensus 256 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 286 (1236)
..|+.+++++|+++|++++..+..|.||.+-
T Consensus 120 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHTCHHHHHHHSSCC----------------
T ss_pred HhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 9999999999999999999999999998654
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=4.7e-23 Score=206.42 Aligned_cols=153 Identities=22% Similarity=0.323 Sum_probs=115.2
Q ss_pred CcchhhHHhhcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEA-DANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~-ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
|.||||.||..|+.++|+.|++. +.+++..|..|.||||+ +..|+.+++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~--------------------------- 53 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALE--------------------------- 53 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHH---------------------------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHH---------------------------
Confidence 56899999999999999999998 34899999999999999 99999999987
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++.+|..|.||||+|+..|+.++++.|++.....
T Consensus 54 ----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------------- 94 (156)
T 1bd8_A 54 ----LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV----------------------------------- 94 (156)
T ss_dssp ----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-----------------------------------
T ss_pred ----HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------------
Confidence 99999999988887777777777776666666666532100
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~i 262 (1236)
......|.||||+|+..|+.+++++|++. ++++.+|.+|+||||+|+..|+.++
T Consensus 95 -------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 95 -------------------------NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp -------------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred -------------------------CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 00001366777777777777777777766 7777777777777777777777777
Q ss_pred HHHHHhC
Q psy8898 263 CSLLLSE 269 (1236)
Q Consensus 263 v~~Ll~~ 269 (1236)
+++|+++
T Consensus 149 v~~Ll~~ 155 (156)
T 1bd8_A 149 VDILQGH 155 (156)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777653
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=4.1e-23 Score=201.13 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=125.6
Q ss_pred cccchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCC-Cc
Q psy8898 664 MPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKE-LL 742 (1236)
Q Consensus 664 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~-G~ 742 (1236)
+++.++..|.||||.|+..|+.+++++|++.+......+..|+||||+|+. ++.+++++|+++|++++.+|.. |+
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM----GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT----SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc----CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 457788899999999999999999999999988777777889999999997 6899999999999999999999 99
Q ss_pred hHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 743 APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 743 T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=1.1e-23 Score=227.42 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=120.0
Q ss_pred ccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhC
Q psy8898 673 GHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLG 752 (1236)
Q Consensus 673 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g 752 (1236)
.|+||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~ 114 (239)
T 1ycs_B 38 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA---GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114 (239)
T ss_dssp HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH---TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 4567777899999999999999987777788899999999997 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCccccCCCCC-cHHHHH--HHcCCHHHHHHHHhCCCCCCccc
Q psy8898 753 HLDVLDTLLRLGAKVNLVDVLGQ-TALHRT--ARDDKTQAVRVLLSHNADTSIVS 804 (1236)
Q Consensus 753 ~~~iv~~Ll~~ga~~n~~d~~G~-tpL~~A--~~~~~~~iv~~Ll~~ga~~~~~~ 804 (1236)
+.++|++|+++|++++.+|..|. ||||+| +..|+.+++++|+++|++++..+
T Consensus 115 ~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169 (239)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred CHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence 99999999999999999998887 999999 88999999999999999887753
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.6e-23 Score=214.77 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=131.7
Q ss_pred CcHHHHHHHHHcCCCccccC-CCCcchhhHHhhcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEee
Q psy8898 2 GRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHA----DVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI 76 (1236)
Q Consensus 2 G~~~~v~~Ll~~ga~~n~~d-~~g~t~L~~A~~~g~~----~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~L 76 (1236)
|+.+.++.++..|. +.++ ..|+||||+|+.+|+. ++|++|+++|+++|.+|..|+||||+|+..|+.++...
T Consensus 17 g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~- 93 (186)
T 3t8k_A 17 GTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT- 93 (186)
T ss_dssp SCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH-
T ss_pred CCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH-
Confidence 88999999998864 4455 7899999999999985 59999999999999999999999999999998654110
Q ss_pred eccccCccccccccccCCCCCCCCCcchhHHHhcCCCCCCcccCCC-CcchhhcccChHHHHHHHHhcCCCCCCCCCCCC
Q psy8898 77 YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQ-TPLDLTVAEDVRSLLQDAMAQYPGAPSCAETAS 155 (1236)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~ 155 (1236)
...|++|+++|++++.+|..|. ||||+|+..+..
T Consensus 94 ------------------------~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~--------------------- 128 (186)
T 3t8k_A 94 ------------------------TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD--------------------- 128 (186)
T ss_dssp ------------------------HHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSC---------------------
T ss_pred ------------------------HHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCC---------------------
Confidence 0112349999999999999999 999999864321
Q ss_pred CCCCCcccccccCCCCCCCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHh
Q psy8898 156 VPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIK 235 (1236)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~ 235 (1236)
..++.+++++|++
T Consensus 129 -------------------------------------------------------------------~~~~~~iv~~Ll~ 141 (186)
T 3t8k_A 129 -------------------------------------------------------------------ENEMIPLYKLIFS 141 (186)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHT
T ss_pred -------------------------------------------------------------------hhhHHHHHHHHHH
Confidence 0145678999999
Q ss_pred -cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC
Q psy8898 236 -AGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276 (1236)
Q Consensus 236 -~ga~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~ 276 (1236)
+|++++.+|..|+||||+|++.|+.++|++|.++..+.+.+
T Consensus 142 ~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp STTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999875544443
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=1.5e-22 Score=202.50 Aligned_cols=136 Identities=23% Similarity=0.263 Sum_probs=119.1
Q ss_pred cchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCch-H
Q psy8898 666 RIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLA-P 744 (1236)
Q Consensus 666 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T-~ 744 (1236)
...+..+.||||.|+..|+.+++++|++.+......+..|+||||+|+ . ++.+++++|+++|++++.+|..|+| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~---~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M---GSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T---TCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c---CCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 445678899999999999999999999998877777778999999985 3 7899999999999999999999999 9
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q psy8898 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSL 805 (1236)
Q Consensus 745 Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 805 (1236)
||+|++.|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 142 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence 9999999999999999999999999999999999999999999999999999999988753
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=7.2e-22 Score=192.28 Aligned_cols=127 Identities=31% Similarity=0.435 Sum_probs=119.3
Q ss_pred hhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHH
Q psy8898 668 KDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHL 747 (1236)
Q Consensus 668 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~ 747 (1236)
....+.|+||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH---GHLEIVEVLLKNGADVNAVDAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 345678999999999999999999999887777778899999999997 78999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8898 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797 (1236)
Q Consensus 748 A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~g 797 (1236)
|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999987
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=1.2e-21 Score=188.00 Aligned_cols=126 Identities=37% Similarity=0.454 Sum_probs=120.8
Q ss_pred ccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHH
Q psy8898 671 FKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAAD 750 (1236)
Q Consensus 671 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~ 750 (1236)
+|.|||+.|+..|+.+++++|++.+......+..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 478999999999999999999999887777777899999999997 88999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 751 LGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 751 ~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
.|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++||+
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999986
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.86 E-value=2.5e-22 Score=205.91 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=108.3
Q ss_pred cccHHHHHHHcCCH----HHHHHhhccCCcccCCCCCCChHHHHHhhCCCCC---hHHHHHHHHHcCCCCCCCCCCCc-h
Q psy8898 672 KGHCLLEACRQGDP----SRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPK---RKAIVESLIRKGAHLNEKNKELL-A 743 (1236)
Q Consensus 672 ~~~~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~---~~~iv~~Ll~~gadin~~d~~G~-T 743 (1236)
|.||||+|+..|+. +++++|++.+......+..|+||||+|+..+... ..+++++|+++|+|+|.+|..|+ |
T Consensus 38 g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tt 117 (186)
T 3t8k_A 38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117 (186)
T ss_dssp TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBC
T ss_pred CCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCch
Confidence 33444444555553 5899999999988888888999999999863211 26899999999999999999999 9
Q ss_pred HHHHHHHhC-----CHHHHHHHHH-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy8898 744 PIHLAADLG-----HLDVLDTLLR-LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801 (1236)
Q Consensus 744 ~Lh~A~~~g-----~~~iv~~Ll~-~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~ 801 (1236)
|||+|+..+ +.+++++|++ +|+++|.+|..|+||||+|++.|+.++|++|+++..+.+
T Consensus 118 pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999944 4679999999 999999999999999999999999999999998754433
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=1.1e-21 Score=190.96 Aligned_cols=127 Identities=31% Similarity=0.440 Sum_probs=115.8
Q ss_pred cCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCC
Q psy8898 20 RDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCP 99 (1236)
Q Consensus 20 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~ 99 (1236)
....|.||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------ 65 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV------------------------ 65 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH------------------------
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH------------------------
Confidence 34578999999999999999999999999999999999999999999999999988
Q ss_pred CCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcc
Q psy8898 100 MHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQY 179 (1236)
Q Consensus 100 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1236)
|+++|++++.+|..
T Consensus 66 -------Ll~~g~~~~~~d~~----------------------------------------------------------- 79 (136)
T 2jab_A 66 -------LLKNGADVNAVDAI----------------------------------------------------------- 79 (136)
T ss_dssp -------HHHTTCCTTCCCTT-----------------------------------------------------------
T ss_pred -------HHHcCCCCCcCCCC-----------------------------------------------------------
Confidence 99999998866543
Q ss_pred CCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy8898 180 SGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR 259 (1236)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~ 259 (1236)
|.||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+
T Consensus 80 ----------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~ 125 (136)
T 2jab_A 80 ----------------------------------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125 (136)
T ss_dssp ----------------------------------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred ----------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC
Confidence 5567888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy8898 260 LEVCSLLLSEG 270 (1236)
Q Consensus 260 ~~iv~~Ll~~g 270 (1236)
.+++++|+++|
T Consensus 126 ~~~~~~Ll~~G 136 (136)
T 2jab_A 126 EDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999976
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=1.9e-21 Score=186.71 Aligned_cols=126 Identities=48% Similarity=0.634 Sum_probs=117.0
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCCCc
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK 102 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1236)
+|+||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~--------------------------- 53 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL--------------------------- 53 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH---------------------------
Confidence 58999999999999999999999999999999999999999999999999988
Q ss_pred chhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCccCCC
Q psy8898 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGS 182 (1236)
Q Consensus 103 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1236)
|+++|++++.++..
T Consensus 54 ----Ll~~g~~~~~~~~~-------------------------------------------------------------- 67 (126)
T 1n0r_A 54 ----LLEAGADVNAKDKN-------------------------------------------------------------- 67 (126)
T ss_dssp ----HHHTTCCTTCCCTT--------------------------------------------------------------
T ss_pred ----HHHcCCCCcccCCC--------------------------------------------------------------
Confidence 99999998766543
Q ss_pred CCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy8898 183 GGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262 (1236)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~~~i 262 (1236)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 68 -------------------------------g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 116 (126)
T 1n0r_A 68 -------------------------------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116 (126)
T ss_dssp -------------------------------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -------------------------------CCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHH
Confidence 5568888888899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q psy8898 263 CSLLLSEGAD 272 (1236)
Q Consensus 263 v~~Ll~~ga~ 272 (1236)
+++|+++|+|
T Consensus 117 ~~~Ll~~Gad 126 (126)
T 1n0r_A 117 VKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHcCCC
Confidence 9999999986
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=5e-22 Score=193.81 Aligned_cols=134 Identities=28% Similarity=0.391 Sum_probs=115.1
Q ss_pred CCCccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccC
Q psy8898 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 14 ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
|+|+ .+|.+|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~------------------ 61 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL------------------ 61 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH------------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHH------------------
Confidence 6788 689999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++.+|..
T Consensus 62 -------------Ll~~g~~~~~~~~~----------------------------------------------------- 75 (137)
T 3c5r_A 62 -------------LLQHKALVNTTGYQ----------------------------------------------------- 75 (137)
T ss_dssp -------------HHHTTCCTTCCCGG-----------------------------------------------------
T ss_pred -------------HHHcCCcccCcCCC-----------------------------------------------------
Confidence 99999998866543
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~ 253 (1236)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 76 ----------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~ 115 (137)
T 3c5r_A 76 ----------------------------------------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115 (137)
T ss_dssp ----------------------------------------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred ----------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 5567888888899999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhCCCC
Q psy8898 254 AASKSRLEVCSLLLSEGAD 272 (1236)
Q Consensus 254 A~~~g~~~iv~~Ll~~ga~ 272 (1236)
|+..+..+++++|.+.+..
T Consensus 116 A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 116 TDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CCCHHHHHHHSCC------
T ss_pred HhhccHHHHHhhccccccC
Confidence 9999999999888776543
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=1.9e-21 Score=189.70 Aligned_cols=130 Identities=25% Similarity=0.293 Sum_probs=118.1
Q ss_pred chhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHH
Q psy8898 667 IKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH 746 (1236)
Q Consensus 667 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh 746 (1236)
.++..|.||||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH---GHLKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 5678899999999999999999999999887777778899999999997 8999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 747 ~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
+|++.|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|.+.+..
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 99999999999999999999999999999999999999999999998887654
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=2.8e-20 Score=177.38 Aligned_cols=117 Identities=26% Similarity=0.323 Sum_probs=105.0
Q ss_pred hccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHH
Q psy8898 670 EFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAA 749 (1236)
Q Consensus 670 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~ 749 (1236)
..+.|+|+.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC---GQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT---TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 4678999999999999999999999887777777899999999997 8899999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHH
Q psy8898 750 DLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQA 789 (1236)
Q Consensus 750 ~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~i 789 (1236)
..|+.++|++|+++|++++.+|.+|+||||+|...+..++
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 9999999999999999999999999999999954444433
No 94
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=6.3e-20 Score=164.91 Aligned_cols=93 Identities=42% Similarity=0.605 Sum_probs=89.0
Q ss_pred CCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8898 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783 (1236)
Q Consensus 704 ~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~ 783 (1236)
+|+||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 389999999997 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCC
Q psy8898 784 DDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 784 ~~~~~iv~~Ll~~ga~ 799 (1236)
.|+.+++++|+++||+
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999985
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=1e-20 Score=201.83 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=112.8
Q ss_pred cccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCC
Q psy8898 18 HARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTG 97 (1236)
Q Consensus 18 n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 97 (1236)
+.+|..|+||||+||..|+.++|++|++.|++++..|..|+||||+|+..|+.++|++
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------- 124 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM---------------------- 124 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----------------------
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHH----------------------
Confidence 3456788999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcchhHHHhc-CCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCC
Q psy8898 98 CPMHKDRSCYLAH-GADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPP 176 (1236)
Q Consensus 98 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1236)
|+++ |++++.+|..
T Consensus 125 ---------Ll~~~g~~~~~~d~~-------------------------------------------------------- 139 (222)
T 3ehr_A 125 ---------LFTQPNIELNQQNKL-------------------------------------------------------- 139 (222)
T ss_dssp ---------HTTSTTCCCCCCCTT--------------------------------------------------------
T ss_pred ---------HHcCCCCCccccCCC--------------------------------------------------------
Confidence 8888 9998876654
Q ss_pred CccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy8898 177 AQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAAS 256 (1236)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~ 256 (1236)
|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus 140 -------------------------------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 182 (222)
T 3ehr_A 140 -------------------------------------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182 (222)
T ss_dssp -------------------------------------SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred -------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence 5567888888899999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhCCCCCCCCCCCCC
Q psy8898 257 KSRLEVCSLLLSEGADPTLHNCHSK 281 (1236)
Q Consensus 257 ~g~~~iv~~Ll~~ga~~~~~~~~g~ 281 (1236)
.|+.++++.|++.|+..+..+..+.
T Consensus 183 ~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 183 AACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHHHHC-----------------
T ss_pred hhHHHHHHHHhccchhhhccchhhh
Confidence 9999999999999999887765443
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=3.2e-20 Score=197.98 Aligned_cols=137 Identities=24% Similarity=0.240 Sum_probs=117.3
Q ss_pred cchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHc-CCCCCCCCCCCchH
Q psy8898 666 RIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRK-GAHLNEKNKELLAP 744 (1236)
Q Consensus 666 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~G~T~ 744 (1236)
+..+..|.||||.||..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++ |+++|.+|..|+||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG---GHKDIVEMLFTQPNIELNQQNKLGDTA 143 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc---CCHHHHHHHHcCCCCCccccCCCCCCH
Confidence 34667899999999999999999999999887777778899999999997 899999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q psy8898 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSL 805 (1236)
Q Consensus 745 Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 805 (1236)
||+|+..|+.++|++|+++|++++.+|..|.|||++|+..++.++++.|+++|+.....+.
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~ 204 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence 9999999999999999999999999999999999999999999999999999998877653
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.79 E-value=7.2e-20 Score=174.57 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=101.1
Q ss_pred cCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCC
Q psy8898 20 RDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCP 99 (1236)
Q Consensus 20 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~ 99 (1236)
.+..|.||||+|+..|+.++|++|++.|++++..|..|+||||+|+..|+.+++++
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------ 58 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF------------------------ 58 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH------------------------
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHH------------------------
Confidence 35678999999999999999999999999999999999999999999999999987
Q ss_pred CCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcc
Q psy8898 100 MHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQY 179 (1236)
Q Consensus 100 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1236)
|+++|++++.+|..
T Consensus 59 -------Ll~~g~~~~~~d~~----------------------------------------------------------- 72 (123)
T 3aaa_C 59 -------LLLKGADINAPDKH----------------------------------------------------------- 72 (123)
T ss_dssp -------HHTTTCCTTCCCTT-----------------------------------------------------------
T ss_pred -------HHHcCCCCCcCCCC-----------------------------------------------------------
Confidence 99999998876543
Q ss_pred CCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy8898 180 SGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR 259 (1236)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~ 259 (1236)
|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|...+.
T Consensus 73 ----------------------------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 73 ----------------------------------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp ----------------------------------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred ----------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence 5567888888899999999999999999999999999999954443
Q ss_pred HH
Q psy8898 260 LE 261 (1236)
Q Consensus 260 ~~ 261 (1236)
.+
T Consensus 119 ~~ 120 (123)
T 3aaa_C 119 KA 120 (123)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.79 E-value=3e-19 Score=183.70 Aligned_cols=141 Identities=23% Similarity=0.235 Sum_probs=122.5
Q ss_pred chhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCC-CCCchHH
Q psy8898 667 IKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN-KELLAPI 745 (1236)
Q Consensus 667 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d-~~G~T~L 745 (1236)
..+..|.||||.|+..|+.+++++|++ +......+..|+||||+|+.. ++.+++++|+++|+++|.+| ..|+|||
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL---GSDKCVRLLAEAGADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 356789999999999999999999999 666666777899999999997 89999999999999999998 8999999
Q ss_pred HHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccchhHHHhhhchHHHHHHHH
Q psy8898 746 HLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELFE 825 (1236)
Q Consensus 746 h~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1236)
|+|+..|+.+++++|+++|++++.+|..|+||||+|++.++.+. ..+.+..+...+..++++++.
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~---------------~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP---------------KGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC---------------CCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc---------------cccHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999999999998654422 223455666777777777775
Q ss_pred H
Q psy8898 826 R 826 (1236)
Q Consensus 826 ~ 826 (1236)
+
T Consensus 180 ~ 180 (183)
T 3deo_A 180 G 180 (183)
T ss_dssp T
T ss_pred H
Confidence 4
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=7.6e-19 Score=192.96 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=118.8
Q ss_pred ccHHHHHHHcCCHHHHHHhhccCCcc------cCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHH
Q psy8898 673 GHCLLEACRQGDPSRVKKFLTSDVVN------FKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH 746 (1236)
Q Consensus 673 ~~~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh 746 (1236)
.++|+.|+..|+.+.++.++..+... ...+..|+||||+|+..+..++.+++++|+++|+++|.+|..|+||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 46899999999999999999987753 233566999999999964446899999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q psy8898 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802 (1236)
Q Consensus 747 ~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 802 (1236)
+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++...
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 266 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987544
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.78 E-value=1.1e-19 Score=187.02 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=70.4
Q ss_pred cCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCC
Q psy8898 20 RDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCP 99 (1236)
Q Consensus 20 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~ 99 (1236)
.+.+|+||||.||..|+.++|++|++ |+++|..|..|+||||+|+..|+.+++++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~------------------------ 94 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRL------------------------ 94 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHH------------------------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHH------------------------
Confidence 34567778888888888888887777 77777777777888888888777777776
Q ss_pred CCcchhHHHhcCCCCCCcc-cCCCCcchhhcccChHHHHHHHHhc
Q psy8898 100 MHKDRSCYLAHGADPFLKN-QEGQTPLDLTVAEDVRSLLQDAMAQ 143 (1236)
Q Consensus 100 ~~~~v~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~~v~~l~~~ 143 (1236)
|+++|++++.++ ..|+||||+|+..|+.++++.|++.
T Consensus 95 -------Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 132 (183)
T 3deo_A 95 -------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132 (183)
T ss_dssp -------HHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred -------HHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Confidence 777777777776 7777888888777777777777764
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=196.75 Aligned_cols=129 Identities=24% Similarity=0.228 Sum_probs=119.1
Q ss_pred cccHHHHHHHcCCHHHHHHhhccCCcccC------CCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHH
Q psy8898 672 KGHCLLEACRQGDPSRVKKFLTSDVVNFK------HPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPI 745 (1236)
Q Consensus 672 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~L 745 (1236)
..++|+.|+..|+.+.+++|+..+..... .+..|+||||+|+..+..++.+++++|+++|+++|.+|..|+|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34689999999999999999998876554 466799999999986444789999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy8898 746 HLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800 (1236)
Q Consensus 746 h~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~ 800 (1236)
|+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999874
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=198.47 Aligned_cols=139 Identities=19% Similarity=0.067 Sum_probs=120.0
Q ss_pred CCCcchhhHHhhcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHh---CCCceEEeeeccccCcccccccccc
Q psy8898 22 DGGLHPLHNACSFGHADVVRLLLEADANPNT------RDNWNFTPLHEAAAK---GKTDVCIGIYFAEHSSKSNQYVYGI 92 (1236)
Q Consensus 22 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~------~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~ 92 (1236)
..+.++|+.|+..|+.+.|+.|++.|++++. .|..|.||||+|+.. |+.+++++
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~----------------- 211 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF----------------- 211 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHH-----------------
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHH-----------------
Confidence 3455789999999999999999999999998 699999999999997 88888887
Q ss_pred CCCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCC
Q psy8898 93 GGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVS 172 (1236)
Q Consensus 93 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1236)
|+++|++++.+|..
T Consensus 212 --------------Ll~~gadvn~~d~~---------------------------------------------------- 225 (301)
T 2b0o_E 212 --------------IIQNGGHLDAKAAD---------------------------------------------------- 225 (301)
T ss_dssp --------------HHHHSSCTTCCCTT----------------------------------------------------
T ss_pred --------------HHhcCCCCCCCCCC----------------------------------------------------
Confidence 99999999876554
Q ss_pred CCCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy8898 173 LPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLH 252 (1236)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~ 252 (1236)
|+||||+|+..|+.++|++|+++|++++.+|.+|+||||
T Consensus 226 -----------------------------------------G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~ 264 (301)
T 2b0o_E 226 -----------------------------------------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264 (301)
T ss_dssp -----------------------------------------CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred -----------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 556788888889999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCCCCCccccccch
Q psy8898 253 EAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTR 290 (1236)
Q Consensus 253 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~a~~~ 290 (1236)
+|+..|+.+++++|+++|++ .|.||||+|+..
T Consensus 265 ~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 265 IARKKHHKECEELLEQAQAG------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred HHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence 99999999999999999886 478998887543
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=8e-19 Score=189.53 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=122.6
Q ss_pred cchhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCC-CCCchH
Q psy8898 666 RIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN-KELLAP 744 (1236)
Q Consensus 666 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d-~~G~T~ 744 (1236)
...+..|.||||.||..|+.+++++|++ +......+..|+||||+|+.. ++.++|++|+++|+++|.+| ..|+||
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 39 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL---GSDKCVRLLAEAGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTCCCSSSCCCH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC---CCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 3455689999999999999999999999 666666677799999999997 89999999999999999998 889999
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccchhHHHhhhchHHHHHHH
Q psy8898 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELF 824 (1236)
Q Consensus 745 Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1236)
||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++. ....+++..+...+...+++++
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~---------------~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT---------------TPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT---------------CCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc---------------cCCCCHHHHHHHcChHHHHHHH
Confidence 9999999999999999999999999999999999999864321 2234556667777777777777
Q ss_pred HHh
Q psy8898 825 ERE 827 (1236)
Q Consensus 825 ~~~ 827 (1236)
.+.
T Consensus 180 ~~~ 182 (244)
T 3ui2_A 180 EGQ 182 (244)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.3e-18 Score=208.76 Aligned_cols=130 Identities=24% Similarity=0.218 Sum_probs=117.2
Q ss_pred cHHHHHHHcCCHHHHHHhhccCCcccCC------CCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHH
Q psy8898 674 HCLLEACRQGDPSRVKKFLTSDVVNFKH------PYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHL 747 (1236)
Q Consensus 674 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~ 747 (1236)
+.|+.|+..|+.+.++.|++.+...... +..|+||||+||.....++.+++++|+++|+|+|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 6799999999999999999998765544 5679999999987334589999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q psy8898 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803 (1236)
Q Consensus 748 A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 803 (1236)
|+..|+.++|++|+++||++|.+|..|+||||+|+..|+.+++++|+++||+++..
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999998874
No 105
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=1.1e-19 Score=196.44 Aligned_cols=143 Identities=17% Similarity=0.081 Sum_probs=114.8
Q ss_pred CCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCCCCC
Q psy8898 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100 (1236)
Q Consensus 21 d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 100 (1236)
+.+|+||||+||..|+.++|++|++ |+++|..|..|+||||+|+..|+.++|++
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~------------------------- 95 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRL------------------------- 95 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHH-------------------------
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHH-------------------------
Confidence 3578899999999999999999999 89999999999999999999999999887
Q ss_pred CcchhHHHhcCCCCCCcc-cCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcc
Q psy8898 101 HKDRSCYLAHGADPFLKN-QEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQY 179 (1236)
Q Consensus 101 ~~~v~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1236)
|+++|++++.++ ..|+||||+|+..|+.++++.|++.....
T Consensus 96 ------Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------------------------------- 137 (244)
T 3ui2_A 96 ------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-------------------------------- 137 (244)
T ss_dssp ------HHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT--------------------------------
T ss_pred ------HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------------------------------
Confidence 999999998887 78999999999999988888887642110
Q ss_pred CCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q psy8898 180 SGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR 259 (1236)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~g~ 259 (1236)
......|.||||+|+..++. +. +.||||+|+..|+
T Consensus 138 ----------------------------~~~d~~g~t~l~~A~~~~~~---------~~--------~~~~l~~a~~~g~ 172 (244)
T 3ui2_A 138 ----------------------------EVEDERGLTALELAREILKT---------TP--------KGNPMQFGRRIGL 172 (244)
T ss_dssp ----------------------------TCCCTTCCCHHHHHHHHHTT---------CC--------CSSHHHHHHHHHH
T ss_pred ----------------------------CCCCCCCCcHHHHHHHHHhc---------cC--------CCCHHHHHHHcCh
Confidence 00111588999999864332 22 3689999999999
Q ss_pred HHHHHHHHhCCCC
Q psy8898 260 LEVCSLLLSEGAD 272 (1236)
Q Consensus 260 ~~iv~~Ll~~ga~ 272 (1236)
.+++++|++++.+
T Consensus 173 ~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 173 EKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHEE
T ss_pred HHHHHHHHHhccc
Confidence 9999999887544
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=5e-18 Score=192.58 Aligned_cols=129 Identities=21% Similarity=0.217 Sum_probs=118.9
Q ss_pred hhhccccHHHHHHHc-CCHHHHHHhhccCCcccCCC--CCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchH
Q psy8898 668 KDEFKGHCLLEACRQ-GDPSRVKKFLTSDVVNFKHP--YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAP 744 (1236)
Q Consensus 668 ~~~~~~~~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~ 744 (1236)
....+.++|+.|+.. |+.+++++|++.+......+ ..|+||||+|+.. ++.+++++|+++|+++|.+|..|+||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA---NSLLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC---CCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 334567899999999 99999999999988776666 6799999999997 89999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8898 745 IHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799 (1236)
Q Consensus 745 Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A~~~~~~~iv~~Ll~~ga~ 799 (1236)
||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++++..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999988743
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=3.7e-18 Score=193.64 Aligned_cols=143 Identities=24% Similarity=0.230 Sum_probs=115.2
Q ss_pred CCCCcchhhHHhhc-CCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCCC
Q psy8898 21 DDGGLHPLHNACSF-GHADVVRLLLEADANPNTRD--NWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTG 97 (1236)
Q Consensus 21 d~~g~t~L~~A~~~-g~~~iv~~Ll~~ga~~n~~d--~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 97 (1236)
+..+.||||.|+.. |+.++|+.|+++|+++|..| ..|.||||+|+..|+.++|++
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~---------------------- 253 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF---------------------- 253 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHH----------------------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHH----------------------
Confidence 34567899999999 99999999999999999998 899999999999999999988
Q ss_pred CCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCC
Q psy8898 98 CPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPA 177 (1236)
Q Consensus 98 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1236)
|+++|++++..|..
T Consensus 254 ---------LL~~Gadvn~~d~~--------------------------------------------------------- 267 (368)
T 3jue_A 254 ---------LLQNGANVNQADSA--------------------------------------------------------- 267 (368)
T ss_dssp ---------HHHTTCCTTCCCTT---------------------------------------------------------
T ss_pred ---------HHHcCCCCCCCCCC---------------------------------------------------------
Confidence 99999999876654
Q ss_pred ccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q psy8898 178 QYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASK 257 (1236)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A~~~ 257 (1236)
|+||||+|+..|+.++|++|+++|++++..|.+|+||||+|+..
T Consensus 268 ------------------------------------G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~ 311 (368)
T 3jue_A 268 ------------------------------------GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311 (368)
T ss_dssp ------------------------------------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred ------------------------------------CCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence 55678888888999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCC---CCCCCCCCCCCCccccc
Q psy8898 258 SRLEVCSLLLSEG---ADPTLHNCHSKSAIDVA 287 (1236)
Q Consensus 258 g~~~iv~~Ll~~g---a~~~~~~~~g~t~l~~a 287 (1236)
|+.+++++|++.+ ++....+..+.|++++.
T Consensus 312 g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp TCHHHHHHHHHHHC-------------------
T ss_pred CCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 9999999999876 33444556666766554
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=5.2e-18 Score=203.55 Aligned_cols=130 Identities=19% Similarity=0.078 Sum_probs=114.2
Q ss_pred CCcchhhHHhhcCCHHHHHHHHHCCCCCCCC------CCCCCCHHHHHHH---hCCCceEEeeeccccCccccccccccC
Q psy8898 23 GGLHPLHNACSFGHADVVRLLLEADANPNTR------DNWNFTPLHEAAA---KGKTDVCIGIYFAEHSSKSNQYVYGIG 93 (1236)
Q Consensus 23 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~------d~~g~t~L~~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 93 (1236)
...+.||.|+..|+.++|+.|++.|+++|.. |..|.||||+|+. .|+.++|++
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~------------------ 192 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF------------------ 192 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHH------------------
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHH------------------
Confidence 3447899999999999999999999999988 8899999999966 899999988
Q ss_pred CCCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q psy8898 94 GGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSL 173 (1236)
Q Consensus 94 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1236)
|+++|++++.+|..
T Consensus 193 -------------Ll~~ga~vn~~d~~----------------------------------------------------- 206 (497)
T 3lvq_E 193 -------------IIQNGGHLDAKAAD----------------------------------------------------- 206 (497)
T ss_dssp -------------HHHHSCCTTCCCSS-----------------------------------------------------
T ss_pred -------------HHHcCCCCCccCCC-----------------------------------------------------
Confidence 99999999987665
Q ss_pred CCCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy8898 174 PPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253 (1236)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~ 253 (1236)
|+||||+||..|+.++|++|+++|+++|.+|.+|+||||+
T Consensus 207 ----------------------------------------g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 246 (497)
T 3lvq_E 207 ----------------------------------------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246 (497)
T ss_dssp ----------------------------------------SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHH
T ss_pred ----------------------------------------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 4557777778899999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCCCC
Q psy8898 254 AASKSRLEVCSLLLSEGADPTLH 276 (1236)
Q Consensus 254 A~~~g~~~iv~~Ll~~ga~~~~~ 276 (1236)
|+..|+.+++++|+++|++++..
T Consensus 247 A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 247 ARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999998774
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.71 E-value=2.2e-17 Score=181.23 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=114.1
Q ss_pred CcchhhHHhhcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHh---CCCceEEeeeccccCccccccccccCC
Q psy8898 24 GLHPLHNACSFGHADVVRLLLEADANP------NTRDNWNFTPLHEAAAK---GKTDVCIGIYFAEHSSKSNQYVYGIGG 94 (1236)
Q Consensus 24 g~t~L~~A~~~g~~~iv~~Ll~~ga~~------n~~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 94 (1236)
..++|+.|+..|+.+.++.|++.|+++ +..|..|+||||+|+.. |+.+++++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~------------------- 190 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF------------------- 190 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHH-------------------
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHH-------------------
Confidence 357899999999999999999999994 45588999999999999 88899887
Q ss_pred CCCCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q psy8898 95 GTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLP 174 (1236)
Q Consensus 95 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1236)
|+++|++++.+|..
T Consensus 191 ------------Ll~~ga~in~~d~~------------------------------------------------------ 204 (278)
T 1dcq_A 191 ------------LVQNSGNLDKQTGK------------------------------------------------------ 204 (278)
T ss_dssp ------------HHHHCSCTTCCCTT------------------------------------------------------
T ss_pred ------------HHHCCCCccccCCC------------------------------------------------------
Confidence 99999999877654
Q ss_pred CCCccCCCCCCcccCCCCCCChhhhHHHhcCcCCccccCCchHHHHHHhcCcHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy8898 175 PPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEA 254 (1236)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ll~~g~~~~~g~T~L~~Aa~~g~~~iv~~Ll~~ga~~n~~d~~g~TpL~~A 254 (1236)
|+||||+|+..|+.++|++|+++|++++.+|.+|+||||+|
T Consensus 205 ---------------------------------------g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 245 (278)
T 1dcq_A 205 ---------------------------------------GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245 (278)
T ss_dssp ---------------------------------------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ---------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHH
Confidence 55678888888999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhCCCCC
Q psy8898 255 ASKSRLEVCSLLLSEGADP 273 (1236)
Q Consensus 255 ~~~g~~~iv~~Ll~~ga~~ 273 (1236)
+..|+.+++++|+++|++.
T Consensus 246 ~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 246 KRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHTTCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999863
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.71 E-value=5e-18 Score=159.52 Aligned_cols=100 Identities=34% Similarity=0.491 Sum_probs=73.6
Q ss_pred CCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHH
Q psy8898 702 PYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRT 781 (1236)
Q Consensus 702 ~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~A 781 (1236)
+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 6 d~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKN---GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHH---TCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 34477777777775 667777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHhCCCCCCccc
Q psy8898 782 ARDDKTQAVRVLLSHNADTSIVS 804 (1236)
Q Consensus 782 ~~~~~~~iv~~Ll~~ga~~~~~~ 804 (1236)
+..++.+++++|+++|++++..+
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHS
T ss_pred HHCCCHHHHHHHHHcCCCCCcCC
Confidence 77777777777777777766543
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.71 E-value=4.1e-17 Score=146.40 Aligned_cols=93 Identities=35% Similarity=0.429 Sum_probs=87.5
Q ss_pred ccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHH
Q psy8898 671 FKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAAD 750 (1236)
Q Consensus 671 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~ 750 (1236)
+|.||||.|+..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 478999999999999999999999988888888899999999997 89999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHCCCC
Q psy8898 751 LGHLDVLDTLLRLGAK 766 (1236)
Q Consensus 751 ~g~~~iv~~Ll~~ga~ 766 (1236)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999985
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.70 E-value=1.7e-17 Score=155.91 Aligned_cols=109 Identities=29% Similarity=0.346 Sum_probs=101.0
Q ss_pred chhhccccHHHHHHHcCCHHHHHHhhccCCcccCCCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHH
Q psy8898 667 IKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH 746 (1236)
Q Consensus 667 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh 746 (1236)
.+|..|.||||.||..|+.+++++|++.+......+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN---GHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT---TCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 4678899999999999999999999999887777778899999999997 7899999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHCCCCccccCCCCCcHH
Q psy8898 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778 (1236)
Q Consensus 747 ~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL 778 (1236)
+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=2.3e-16 Score=146.45 Aligned_cols=90 Identities=30% Similarity=0.392 Sum_probs=85.0
Q ss_pred CCCCCChHHHHHhhCCCCChHHHHHHHHHcCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q psy8898 701 HPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780 (1236)
Q Consensus 701 ~~~~g~t~L~~A~~~~~~~~~~iv~~Ll~~gadin~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ga~~n~~d~~G~tpL~~ 780 (1236)
.+.+|.||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 20 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 20 MGSDLGKKLLEAARA---GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp --CCHHHHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cCCccchHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 345599999999997 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy8898 781 TARDDKTQAVRVL 793 (1236)
Q Consensus 781 A~~~~~~~iv~~L 793 (1236)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=6.6e-16 Score=143.33 Aligned_cols=93 Identities=27% Similarity=0.318 Sum_probs=85.5
Q ss_pred ccccCCCCcchhhHHhhcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCCceEEeeeccccCccccccccccCCCC
Q psy8898 17 IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGT 96 (1236)
Q Consensus 17 ~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~n~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~ 96 (1236)
++..|.+|+||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~--------------------- 75 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL--------------------- 75 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------
Confidence 45568899999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcchhHHHhcCCCCCCcccCCCCcchhhcccChHHHHHHH
Q psy8898 97 GCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDA 140 (1236)
Q Consensus 97 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~l 140 (1236)
|+++|++++.+|..|+||||+|+..|+.++++.|
T Consensus 76 ----------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 76 ----------LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp ----------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----------HHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999999999999999865
No 115
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=97.40 E-value=0.00025 Score=73.44 Aligned_cols=110 Identities=74% Similarity=1.233 Sum_probs=85.7
Q ss_pred CCcceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhc
Q psy8898 872 PGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLF 951 (1236)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1236)
.+..+..+-..+.++..+.+.+......++..+..++.+..+.+.+|.+++++..|++|..++..+...+..
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~-------- 100 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHN-------- 100 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTT--------
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCC--------
Confidence 456788888899999999988887665555544456666788889999999999999998877655543322
Q ss_pred cCCchhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCchHHHHHHhcCcccccccccccccccce
Q psy8898 952 HGSPFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHAYIGGMFGAGKR 1024 (1236)
Q Consensus 952 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 1024 (1236)
..+++.++||.+.+..|+..||+.....-+++|+.|+|
T Consensus 101 -----------------------------------~~ne~~LfHGt~~~~~I~~~Gf~~~~~~~g~~~G~GiY 138 (240)
T 3u9h_A 101 -----------------------------------HANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIY 138 (240)
T ss_dssp -----------------------------------CCCEEEEEECCTTHHHHHHHCCCGGGCBTTSTTCSBEE
T ss_pred -----------------------------------CCceEEEEechHhHHHHHHcCCCcccccCCCcceeeEE
Confidence 23688889999999999999999876656789999999
No 116
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=93.46 E-value=0.12 Score=44.85 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=59.7
Q ss_pred HHhCCCCCCcccccchhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcCCCCCC
Q psy8898 793 LLSHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQ 871 (1236)
Q Consensus 793 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1236)
|++.+..........+..+-...++.++.+.|.+.++. ++.+..+..++++.+|++..|.+.++++.+..+.......+
T Consensus 14 ~~~~~~~m~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p 93 (100)
T 2kg5_A 14 LVPRGSHMAAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDP 93 (100)
T ss_dssp ------CCSCCTTCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCC
T ss_pred cccCccccCCCCcChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCC
Confidence 44444444433344556667777888999999999999 99999999999999999999999999999988776544433
Q ss_pred C
Q psy8898 872 P 872 (1236)
Q Consensus 872 ~ 872 (1236)
.
T Consensus 94 ~ 94 (100)
T 2kg5_A 94 K 94 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.20 E-value=1.6 Score=36.91 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=50.6
Q ss_pred chhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.+..+-...++.++.+.|.+.++. ++.+..+..++++.+|++..+++.++++.+..+.
T Consensus 14 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~ 72 (88)
T 2e8n_A 14 TVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLK 72 (88)
T ss_dssp SHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 344556677788899999999999 9999999999999999999999999999887765
No 118
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=82.37 E-value=1.5 Score=36.39 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=50.0
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
+...-...+..++.+.|.+.++. ++.+..+..++++.+|++..|.+.+++..+..+..
T Consensus 19 V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~ 77 (82)
T 2kso_A 19 VSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 77 (82)
T ss_dssp HHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 34455667788889999999999 99999999999999999999999999998877643
No 119
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=82.15 E-value=2.1 Score=36.21 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=50.4
Q ss_pred chhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.+..+-...+..++.+.|.+.++. ++.+..+..++++.+|++..|.+.+++..+..+.
T Consensus 27 ~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 27 SVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMR 85 (90)
T ss_dssp SHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 344555677888899999999999 9999999999999999999999999999887754
No 120
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=82.13 E-value=1.9 Score=35.75 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=50.3
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
+..+-...+..++.+.|.++++. ++.+..+..+|++.+|++..+++.+++..+..+..
T Consensus 10 V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 10 VGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRA 68 (81)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHH
Confidence 34455667788889999999999 99999999999999999999999999998887653
No 121
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=81.39 E-value=2.6 Score=42.58 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=70.2
Q ss_pred ceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhccCC
Q psy8898 875 LLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGS 954 (1236)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1236)
.+..+-..+.++..+...+....... ...+.+..|.+++++..|++|..++..+...++..
T Consensus 12 ~L~~L~~~s~Ey~~V~~~F~~t~~~~---------~~~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~---------- 72 (217)
T 3hkv_A 12 NLERLAENTGEFQEVVRAFYDTLDAA---------RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERR---------- 72 (217)
T ss_dssp CEEECCSSSHHHHHHHHHHHHTTGGG---------GGTEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSS----------
T ss_pred cceECCCCChHHHHHHHHHHhhcCCc---------CCCceEEEEEEECChhHHHHHHHHHHHHHHhcCCC----------
Confidence 46667778889988887777554322 13456778888999999999988776655444332
Q ss_pred chhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCch--HHHHHHhcCccccccc-ccccccccce
Q psy8898 955 PFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHAY-IGGMFGAGKR 1024 (1236)
Q Consensus 955 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~-~~~~~~~~~~ 1024 (1236)
.+++.++||.. .+..|+..||+..+.- -+++||.|+|
T Consensus 73 ---------------------------------~ne~~LfHGt~~~~~~~I~~~GF~~~~~g~~g~~~G~GiY 112 (217)
T 3hkv_A 73 ---------------------------------PVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVY 112 (217)
T ss_dssp ---------------------------------CSEEEEEEEECGGGHHHHHHHCSCTTTSCCCCCTTCSSEE
T ss_pred ---------------------------------CceEEEEeCCCHHHHHHHHhcCCcccccCcchhcccccee
Confidence 25677777776 4888999999865432 2679999999
No 122
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=81.06 E-value=2.2 Score=35.51 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=49.8
Q ss_pred chhHHHhhhchHHHHHHHHHhcC-CHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.+...-...+..++.+.|.+.++ .++.+..+..++++.+|++..|++.+++..+..+.
T Consensus 13 ~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~ 71 (82)
T 1b4f_A 13 TVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMR 71 (82)
T ss_dssp SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34445567778888999999999 79999999999999999999999999999887654
No 123
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=81.02 E-value=1.7 Score=35.23 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=46.1
Q ss_pred HHhhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 811 CSTNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
+-...+..++.+.|.++++.++.+..+..++++.+|+. .|.+.+++..+....
T Consensus 8 wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~ 60 (74)
T 3k1r_B 8 FLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVP-LGPREKILGAVRRRR 60 (74)
T ss_dssp HHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHH
Confidence 34556777888899999999999999999999999999 999999998886654
No 124
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.66 E-value=2.2 Score=36.98 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=51.9
Q ss_pred chhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcC
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1236)
.+..+-...++.++.+.|.++++. ++.+..+..++++.+|++..+++.++++.+..+...
T Consensus 24 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~ 84 (99)
T 2eao_A 24 TVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQ 84 (99)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence 344566677788899999999999 999999999999999999999999999998877643
No 125
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=80.45 E-value=2.1 Score=36.77 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=50.2
Q ss_pred chhHHHhhhchHHHHHHHHHhcC-CHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.+..+-...+..++.+.|.++++ .++.+..+..++++.+|++..|++.+++..+..+.
T Consensus 28 ~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~ 86 (94)
T 1b0x_A 28 SVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMR 86 (94)
T ss_dssp CHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 34455667778889999999999 89999999999999999999999999999887653
No 126
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=79.70 E-value=1.5 Score=36.67 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=49.4
Q ss_pred chhHHHhhhchHHHHHHHHHhc-CCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQ-ITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
.+...-...+..++.+.|.+++ +.++.+..+..++++.+|++..|++.++++.+..+..
T Consensus 17 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~ 76 (83)
T 2qkq_A 17 SVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKS 76 (83)
T ss_dssp SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444556677888899999999 8999999999999999999999999999998876543
No 127
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=79.16 E-value=3.5 Score=40.87 Aligned_cols=94 Identities=30% Similarity=0.584 Sum_probs=67.4
Q ss_pred ceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhccCC
Q psy8898 875 LLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGS 954 (1236)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1236)
.++.+-..+.++..+...+.... ..+.+.++.+.+++..|++|..+...+...++..
T Consensus 10 ~l~~L~~~s~Ey~~V~~~f~~t~-------------~~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~---------- 66 (193)
T 3smj_A 10 CVVELLPSDPEYNTVASKFNQTC-------------SHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQT---------- 66 (193)
T ss_dssp EEEECCTTSTTHHHHHHHHHHHH-------------TTSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTC----------
T ss_pred EEEECCCCChHHHHHHHHHHhhC-------------CCCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCC----------
Confidence 46667777888888887776553 1245677888889999999988776655444322
Q ss_pred chhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCchH--HHHHHhcCccccccc-ccccccccce
Q psy8898 955 PFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSPF--INAIVQKGFDERHAY-IGGMFGAGKR 1024 (1236)
Q Consensus 955 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~-~~~~~~~~~~ 1024 (1236)
.+++.++||... +..|+..||+..... -+++||.|+|
T Consensus 67 ---------------------------------~ne~~L~HGt~~~~~~~I~~~Gf~~~~~~~~~~~~G~GiY 106 (193)
T 3smj_A 67 ---------------------------------MNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTY 106 (193)
T ss_dssp ---------------------------------CCEEEEEEEECGGGHHHHHHHTTCCCCTTGGGSSSCCCEE
T ss_pred ---------------------------------CCeEEEEeCCCHHHHHHHHHcCCCCccCCCCccccCCeEE
Confidence 256777777764 888999999865432 2689999999
No 128
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=78.50 E-value=2 Score=35.97 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=48.5
Q ss_pred chhHHHhhhchHHHHHHHHHhcC-CHHHHhhcChhhhhhhCcccchhhhhhHHHHHHh
Q psy8898 807 VIFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863 (1236)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1236)
.+...-...+..++.+.|...++ .++.+..+..++++.+|++..+.+.++++.+..+
T Consensus 28 ~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~L 85 (86)
T 2k4p_A 28 GMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85 (86)
T ss_dssp SSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 34455667788889999999998 5899999999999999999999999999887653
No 129
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=77.99 E-value=3.5 Score=33.48 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=47.8
Q ss_pred hhHHHhhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHh
Q psy8898 808 IFSCSTNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1236)
+...-...++.++.+.|.+++++-+.+..+..++++.+|+...+.+.+++..+..+
T Consensus 12 V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L 67 (74)
T 2gle_A 12 VSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67 (74)
T ss_dssp GHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33444556778899999999999999999999999999999999999998887765
No 130
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=77.41 E-value=2.6 Score=35.37 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=48.7
Q ss_pred hHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 809 FSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
..+-...+..++.+.|...++. ++.+..+..++++.+|++..|.+.+++..+..+.
T Consensus 25 ~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr 81 (86)
T 3kka_C 25 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLK 81 (86)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3444667778888999999998 8999999999999999999999999999988764
No 131
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=76.43 E-value=5.3 Score=39.82 Aligned_cols=98 Identities=37% Similarity=0.650 Sum_probs=68.4
Q ss_pred CCcceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhc
Q psy8898 872 PGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLF 951 (1236)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1236)
.+..+..+-..+.++..+...+.... ....+.++.+.++...|++|..+...+...++..
T Consensus 10 ~~~~l~~L~~~s~Ey~~v~~~f~~t~-------------~~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~------- 69 (198)
T 2pqf_A 10 PGFQKITLSSSSEEYQKVWNLFNRTL-------------PFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGK------- 69 (198)
T ss_dssp CSCEEEECCTTSHHHHHHHHHHHTTC-------------TTSEEEEEEEEECHHHHHHHHHHHHHHHHTTTTC-------
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhC-------------CCCEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCC-------
Confidence 44567777778888888777665332 1245677888889999999987765555443321
Q ss_pred cCCchhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCch--HHHHHHhcCcccccccc-cccccccce
Q psy8898 952 HGSPFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHAYI-GGMFGAGKR 1024 (1236)
Q Consensus 952 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 1024 (1236)
..+++.++||+. .+..|+..||+...... +++|+.|+|
T Consensus 70 -----------------------------------~~ne~~LfHGt~~~~~~~I~~~Gf~~~~~~~~g~~~G~GiY 110 (198)
T 2pqf_A 70 -----------------------------------AVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSY 110 (198)
T ss_dssp -----------------------------------CCCEEEEEEECCGGGHHHHHHHCCCTTTTCCCSSCSCSSEE
T ss_pred -----------------------------------CcceEEEEecCCHHHHHHHHHhCCCCcccCCCCCcccCeEE
Confidence 125667777775 58889999998765433 689999999
No 132
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=73.92 E-value=4.1 Score=33.33 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred HHHhhhchHHHHHHHHHhcCCH-HHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcC
Q psy8898 810 SCSTNLGLKHLLELFEREQITL-DILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866 (1236)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1236)
.+....+..++.+.|.+.++.- +.+.++++++++++|+...|.+-++++.+..+...
T Consensus 20 ~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~ 77 (85)
T 1ow5_A 20 LFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRD 77 (85)
T ss_dssp HHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC--
T ss_pred HHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHH
Confidence 3445556678888999999988 99999999999999999999999999998877543
No 133
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=72.41 E-value=2.3 Score=35.23 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=47.2
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHH
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEK 862 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1236)
+..+-...+..++.+.|.+.++. ++.+..+..++++.+|++..|.+.+++..+..
T Consensus 26 V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 26 VSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 81 (82)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 34455677788889999999998 89999999999999999999999999988754
No 134
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=72.06 E-value=6.8 Score=39.81 Aligned_cols=95 Identities=26% Similarity=0.506 Sum_probs=65.2
Q ss_pred cceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhccC
Q psy8898 874 TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHG 953 (1236)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1236)
..+..+-..+.++..+...+..... ...+.++.++++...|++|..+...+...++.
T Consensus 37 ~~l~~L~~~s~ey~~V~~~f~~t~~-------------~~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~---------- 93 (221)
T 3blj_A 37 FCMVQLEPGQSEYNTIKDKFTRTCS-------------SYAIEKIERIQNAFLWQSYQVKKRQMDIKNDH---------- 93 (221)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHT-------------TSEEEEEEEEEEHHHHHHHHHHHHHHHHHSSS----------
T ss_pred EEEEECCCCCHHHHHHHHHHHhhCC-------------CCEEEEEEEEcChhHHHHHHHHHHHHHHhcCC----------
Confidence 3567777788889888877765531 23566777888899999998776555443322
Q ss_pred CchhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCchH--HHHHHhcCcccccccc-cccccccce
Q psy8898 954 SPFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSPF--INAIVQKGFDERHAYI-GGMFGAGKR 1024 (1236)
Q Consensus 954 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~~ 1024 (1236)
..+++.++||+.. +..|+..||+...... +++||.|+|
T Consensus 94 ---------------------------------~~ne~lLfHGt~~~~~~~I~~~Gf~~~~a~~~g~~~G~GiY 134 (221)
T 3blj_A 94 ---------------------------------KNNERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTY 134 (221)
T ss_dssp ---------------------------------CCCEEEEEEEECGGGHHHHHHHCCCTTTC-----CCCSSEE
T ss_pred ---------------------------------CCceEEEeccCChHHHHHHHHhCCCCcccCCCCCccCCeEE
Confidence 2256777787775 8889999999754332 589999999
No 135
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=70.01 E-value=7.3 Score=31.90 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=50.6
Q ss_pred hhHHHhhhchHHHHHHHHHhcC-CHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcCC
Q psy8898 808 IFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP 867 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1236)
+...-...++.++.+.|...++ .++.+..+..+++..+|++..+++.+++..++.+....
T Consensus 15 V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~~ 75 (78)
T 1v38_A 15 IQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGP 75 (78)
T ss_dssp HHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence 3445566778888899999998 69999999999999999999999999999988876543
No 136
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=68.08 E-value=6.1 Score=32.68 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=46.3
Q ss_pred HhhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
-...++.++.+.|.+.++.-..+..+..++++.+|++..+.+.+++..+..+..
T Consensus 19 L~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 19 LEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR 72 (81)
T ss_dssp HHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHH
Confidence 344456677888999999999999999999999999999999999998887654
No 137
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=67.13 E-value=3.4 Score=35.11 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=50.0
Q ss_pred hhHHHhhhchHHHHHHHHHhcC-CHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcC
Q psy8898 808 IFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1236)
+..+-...++.++.+.|.+.++ .++.+..+..++++.+|++..+++.++++.+..+...
T Consensus 18 V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~ 77 (91)
T 1x40_A 18 IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSK 77 (91)
T ss_dssp HHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhh
Confidence 3445567778888999999988 5888999999999999999999999999998877643
No 138
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=66.62 E-value=15 Score=31.16 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=47.9
Q ss_pred hhhch--HHHHHHHHHhcCCHHHHhhcChhhhhh--hCcccchhhhhhHHHHHHhhcCC
Q psy8898 813 TNLGL--KHLLELFEREQITLDILAEMNHEDLKQ--VGVSAYGYRHKLLKGIEKLCSSP 867 (1236)
Q Consensus 813 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 867 (1236)
...++ .++.+.|.++.+.-+.+..+..++++. +|+...+.+.+++..+..+....
T Consensus 30 ~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~ 88 (91)
T 1v85_A 30 EQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP 88 (91)
T ss_dssp HHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 34456 778899999999999999999999998 99999999999999998876544
No 139
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=66.01 E-value=5.6 Score=32.82 Aligned_cols=50 Identities=34% Similarity=0.656 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 816 GLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
+..++.+.|.+.+++-+.+..+..++++.+|+...|.+.+++..+..+..
T Consensus 22 gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~ 71 (80)
T 3bs5_B 22 CLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCA 71 (80)
T ss_dssp GGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35677788999999999999999999999999999999999998887643
No 140
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.48 E-value=5.6 Score=33.12 Aligned_cols=49 Identities=35% Similarity=0.662 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 816 GLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
++.++.+.|.+++++-+.+..+..++++.+|+...+.+.+++..+..+.
T Consensus 26 gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~ 74 (83)
T 2ean_A 26 CLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLC 74 (83)
T ss_dssp GGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3566778899999999999999999999999999999999999888764
No 141
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=63.19 E-value=3.7 Score=33.51 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=44.1
Q ss_pred hhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 813 TNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
...+..++.+.|.+.++....+..+..++++.+|+...|.+.+++..+..+.
T Consensus 15 ~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~ 66 (76)
T 2f3n_A 15 ESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLD 66 (76)
T ss_dssp HHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC-
T ss_pred HHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 3445567788899999999899999999999999999999999999887754
No 142
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.41 E-value=7.7 Score=33.32 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=50.5
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcCC
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP 867 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1236)
+...-...++.++.+.|...++. ++.+..+..+|++.+|++..+++.+++..+..+....
T Consensus 26 V~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~ 86 (97)
T 2dl0_A 26 VSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPP 86 (97)
T ss_dssp HHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHccc
Confidence 44455677788888999998888 7888999999999999999999999999988765443
No 143
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.07 E-value=8.8 Score=31.62 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=48.1
Q ss_pred hhHHHhhhchHHHHHHHHHhcCCH-HHH--hhcChhhhhhhCcccchhhhhhHHHHHHhhcCC
Q psy8898 808 IFSCSTNLGLKHLLELFEREQITL-DIL--AEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP 867 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1236)
+...-...++.++.+.|.+.++.. +.+ ..+..++++.+|++..+++.++++.+..+...+
T Consensus 15 V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~~ 77 (80)
T 2eam_A 15 VGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGP 77 (80)
T ss_dssp HHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 344556667788888999988864 455 589999999999999999999999998875443
No 144
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=54.21 E-value=8.2 Score=33.40 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=48.9
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHh--hcChhhhhhhCcccchhhhhhHHHHHHhhcCC
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILA--EMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP 867 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1236)
+...-...++.++.+.|...++. ++.+. .+..++++.+|++..+.+.+++..+..+...+
T Consensus 32 V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~~ 94 (101)
T 2lmr_A 32 VGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVK 94 (101)
T ss_dssp HHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhcc
Confidence 34455667788888899998886 66666 79999999999999999999999998876543
No 145
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.16 E-value=23 Score=31.38 Aligned_cols=51 Identities=27% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHhhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHh
Q psy8898 811 CSTNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863 (1236)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1236)
.-..+++.++.+.| .++.++.+..+..++++.+|+++.|.+++++..++.+
T Consensus 55 WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~L 105 (119)
T 2b6g_A 55 WLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIV 105 (119)
T ss_dssp HHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHH--ccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHH
Confidence 44556667777777 5678999999999999999999999999998887654
No 146
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=51.94 E-value=17 Score=30.24 Aligned_cols=49 Identities=29% Similarity=0.343 Sum_probs=39.0
Q ss_pred hhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.++..++.+.|. ++.++.+..+..+++..+|+++.|.+++++..+..+.
T Consensus 27 sLrLhKY~~~F~--~~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr 75 (88)
T 2d3d_A 27 SLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 75 (88)
T ss_dssp HTTCGGGHHHHT--TSCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HcccchhHHHHh--cCCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHH
Confidence 344444555563 4688999999999999999999999999999887653
No 147
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.75 E-value=9.2 Score=33.33 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcC
Q psy8898 820 LLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866 (1236)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1236)
+.+.|.+++++-+.+..+..++++.+|+...+.+.+++..+..+...
T Consensus 49 y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~ 95 (103)
T 2e8o_A 49 LLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI 95 (103)
T ss_dssp HHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 78889999999899999999999999999999999999999987654
No 148
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=45.08 E-value=20 Score=29.17 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 816 GLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
+..++.+.|.+.+++-+.+..+..++++.+|+...+.+.+++..+..+.
T Consensus 21 gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr 69 (78)
T 3bs7_A 21 EYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQR 69 (78)
T ss_dssp GGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999998887653
No 149
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=40.56 E-value=13 Score=34.99 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=46.5
Q ss_pred HhhhchHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
-...+..++.+.|.+.++..+.+..+..+|++.+|++..+.+.+++..+..+..
T Consensus 17 L~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~ 70 (149)
T 3sei_A 17 LTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSI 70 (149)
T ss_dssp HHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345566778888999999999999999999999999999999999999887643
No 150
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=40.56 E-value=34 Score=29.86 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 816 GLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
++.++.+.|.+.+++-+.+..+..++++.+|+...+.+.+++..+..+.
T Consensus 41 gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr 89 (106)
T 3bs5_A 41 EYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQR 89 (106)
T ss_dssp GGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999887753
No 151
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=37.69 E-value=33 Score=32.09 Aligned_cols=56 Identities=21% Similarity=0.498 Sum_probs=47.4
Q ss_pred hhHHHhhhchHHHHHHHHHhcCC-HHHHhhcChhhhhhhCcccchhhhhhHHHHHHh
Q psy8898 808 IFSCSTNLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863 (1236)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1236)
+...-...+..++.+.|...++. ++.+..+..++++.+|++..+++.+++..+..+
T Consensus 82 v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l 138 (149)
T 3sei_A 82 LAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKL 138 (149)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34455566777888889999998 899999999999999999999999999988764
No 152
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=37.56 E-value=20 Score=31.15 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=46.6
Q ss_pred hHHHhhhchHHHHHHHHHhcCCH-HHH--hhcChhhhhhhCcccchhhhhhHHHHHHhhc
Q psy8898 809 FSCSTNLGLKHLLELFEREQITL-DIL--AEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
...-...++.++.+.|.+.++.. +.+ ..+..++++.+|++..+++.++++.+..+..
T Consensus 26 ~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 26 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK 85 (103)
T ss_dssp THHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence 34455667778888899998874 455 5999999999999999999999999988753
No 153
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=32.58 E-value=37 Score=28.95 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhh
Q psy8898 817 LKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864 (1236)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1236)
.-.+.+.| .++.++.+..+..+++..+|+++.|.+++++..++.+.
T Consensus 43 LhKY~~~F--~~~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr 88 (101)
T 2es6_A 43 LHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 88 (101)
T ss_dssp CCCTHHHH--TTSCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred CcchHHHH--ccCCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHH
Confidence 33344445 34688889999999999999999999999999887654
No 154
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=30.60 E-value=55 Score=31.50 Aligned_cols=89 Identities=19% Similarity=0.462 Sum_probs=60.5
Q ss_pred cceeeccCCChhhhhHHHHHHHHHHhhccCCCCCCccccceeeeehhhchhhHHHHHHHHHHHHhhhcCCcchhhhhccC
Q psy8898 874 TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHG 953 (1236)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1236)
..+..+-..+.++..+...+.... ....+.++.+.+++..|++|......+.
T Consensus 5 ~~l~~L~~~s~ey~~v~~~f~~t~-------------~~~~I~~I~rv~n~~~~~~f~~~k~~~~--------------- 56 (173)
T 2x5y_A 5 YKLSEIHHLHPEYVRVSEHFKASM-------------KNFKIEKIKKIENSELLDKFTWKKSQMK--------------- 56 (173)
T ss_dssp CEEEECCTTSHHHHHHHHHHHTTC-------------TTEEEEEEEEEECHHHHHHHHHHHHHHT---------------
T ss_pred eEEEECCCCCHHHHHHHHHHHhHC-------------CCCEEeEEEEECCHHHHHHHHHHHHHHh---------------
Confidence 345666667778877776665332 1355667778888999988876543221
Q ss_pred CchhhhhhhcccchhhHHHHhhhhhhhhcccCccchhhhhccCch--HHHHHHhcCcccccc-cccccccccce
Q psy8898 954 SPFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHA-YIGGMFGAGKR 1024 (1236)
Q Consensus 954 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~-~~~~~~~~~~~ 1024 (1236)
.+++.++||+. .+..|+..||+..+. .-+++||.|+|
T Consensus 57 ----------------------------------~n~~~l~HGt~~~~~~~I~~~Gf~~~~~~~~g~~~G~GiY 96 (173)
T 2x5y_A 57 ----------------------------------EEGKLLFYATSRAYVESICSNNFDSFLHETHENKYGKGIY 96 (173)
T ss_dssp ----------------------------------CCCEEEEEEEEGGGHHHHHHHCCCHHHHCCSCSSSCSSEE
T ss_pred ----------------------------------hCcEEEEecCCcccHHHHHHhCCCCcccCCCcCCccCeEE
Confidence 14566777775 488899999986542 35789999999
No 155
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=30.32 E-value=54 Score=27.45 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhcCCHHHHhhcChhhh-hhhCcccchhhhhhHHHHHHhhc
Q psy8898 816 GLKHLLELFEREQITLDILAEMNHEDL-KQVGVSAYGYRHKLLKGIEKLCS 865 (1236)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 865 (1236)
+..++.+.|.++.|.-+.|..+..+++ +.+|+ ..|.+.++...+..+..
T Consensus 31 gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~ 80 (89)
T 1kw4_A 31 GCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKE 80 (89)
T ss_dssp TCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999 78999 79999999999888754
No 156
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=27.50 E-value=57 Score=27.46 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHhhcChhhhhhhCcccchhhhhhHHHHHHhhcC
Q psy8898 823 LFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866 (1236)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1236)
.|.+.+++-+.+..+..++++.+|+...+++..++..++.+...
T Consensus 34 ~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~ 77 (91)
T 1wwv_A 34 PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQAL 77 (91)
T ss_dssp CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999999999999999887543
Done!