RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8898
(1236 letters)
>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere
reverse transcriptase complex (TERT). Tankyrase 1
poly-ADP-ribosylates Telomere Repeat Binding Factor 1
(TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself
or TRF1. The tankyrases also contain multiple ankyrin
repeats that mediate protein-protein interaction (binding
TRF1 and insulin-responsive aminopeptidase) and may
function as a complex. Overexpression of Tank1 promotes
increased telomere length when overexpressed, while
overexpressed Tank2 has been shown to promote PARP
cleavage- independent cell death (necrosis).
Length = 223
Score = 169 bits (429), Expect = 1e-47
Identities = 78/150 (52%), Positives = 92/150 (61%), Gaps = 43/150 (28%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
GT+L+DL DDKE+ +V EEMQ+T+REHRD G +GGIF+RYNIIRIQKV N+KL ERY H
Sbjct: 15 GTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCH 74
Query: 933 RRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHAIRYVHRRAEVADENGGQAHERM 992
R+ E+A+EN +ERMLFHG
Sbjct: 75 RQKEIAEENHNHHNERMLFHG--------------------------------------- 95
Query: 993 LFHGSPFINAIVQKGFDERHAYIGGMFGAG 1022
SPFINAI+ KGFDERHAYIGGMFGAG
Sbjct: 96 ----SPFINAIIHKGFDERHAYIGGMFGAG 121
Score = 108 bits (270), Expect = 3e-26
Identities = 41/53 (77%), Positives = 47/53 (88%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
R +L CRVTLGKSFLQF+A+KMAHAPPGHHSV+GRPS GL + EYV+YRGEQ
Sbjct: 157 RQMLFCRVTLGKSFLQFSAMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQ 209
Score = 85.3 bits (211), Expect = 2e-18
Identities = 32/36 (88%), Positives = 34/36 (94%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAH 110
GIYFAE+SSKSNQYVYGIGGGTGCP HKDRSCY+ H
Sbjct: 121 GIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCH 156
Score = 59.1 bits (143), Expect = 1e-09
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 340 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGY 376
GT+L+DL DDKE+ +V EEMQ+T+REHRD G +GG
Sbjct: 15 GTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGI 51
>gnl|CDD|188923 cd09524, SAM_tankyrase1,2, SAM domain of tankyrase1,2 subfamily.
SAM (sterile alpha motif) domain of Tankyrase1,2
subfamily is a protein-protein interaction domain. In
addition to the SAM domain, proteins of this group have
ankyrin repeats and a ADP- ribosyltransferase
(poly-(ADP-ribose) synthase) domain. Tankyrases can
polymerize through their SAM domains forming
homoligomers and these complexes are disrupted by
autoribosylation. Tankyrases apparently act as master
scaffolding proteins and thus may interact
simultaneously with multiple proteins, in particular
with TRF1, NuMA, IRAP and Grb14 (ankyrin repeats are
involved in these interactions). Tankyrases participate
in a variety of cell signaling pathways as effector
molecules. Their functions are different depending on
the intracellular location: at telomeres they play a
role in the regulation of telomere length via control of
telomerase access to telomeres, at centrosomes they
promote spindle assembly/disassembly, in Golgi vesicles
they participate in the regulation of vesicle
trafficking and Golgi dynamics. Tankyrase 1 may be of
interest as new potential target for telomerase-directed
cancer therapy.
Length = 66
Score = 102 bits (257), Expect = 2e-26
Identities = 36/53 (67%), Positives = 49/53 (92%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866
+LGL+HL E+FEREQITLD+LAEM HE+LK++G++AYG+RHKL+KG+E+L S
Sbjct: 14 SLGLEHLREIFEREQITLDVLAEMGHEELKEIGINAYGHRHKLIKGVERLISG 66
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 95.5 bits (238), Expect = 5e-23
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 45/161 (27%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
N RD DGR TPLH AA + VV+ LL +GADV++KDN G TPLH AA+ G +
Sbjct: 1 NARDEDGR--TPLHLAASNGHLEVVKLLLENGADVNAKDND----GRTPLHLAAKNGHLE 54
Query: 487 LSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLV 546
+ LL ++K + VNARD G TPLH A
Sbjct: 55 IVKLL-------------------------LEKGAD---VNARDKDGN--TPLHLA---- 80
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK 587
G+ +V ++L+KHGA+VN D TPLH AA
Sbjct: 81 -----ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
Score = 92.8 bits (231), Expect = 4e-22
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLR 762
G TPLH A ++ +V+ L+ GA +N K+ + P+HLAA GHL+++ LL
Sbjct: 5 EDGRTPLHLAASN---GHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
GA VN D G T LH AR+ V++LL H AD +
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102
Score = 92.4 bits (230), Expect = 6e-22
Identities = 53/153 (34%), Positives = 71/153 (46%), Gaps = 46/153 (30%)
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
NA D+ G TPLH AA G ++ LL ++ +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLL-------------------------LENGAD--- 32
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
VNA+D GR TPLH A GH E+ ++L++ GA+VN D TPLH AA
Sbjct: 33 VNAKDNDGR--TPLHLA---------AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA 81
Query: 586 -------AKALLQHGADINLKNTDGKTALDLAV 611
K LL+HGAD+N ++ DG+T L LA
Sbjct: 82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA 114
Score = 92.4 bits (230), Expect = 6e-22
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+ LL +GA ++A+D+ G PLH A GH ++V+LLLE A+ N RD TP
Sbjct: 17 NGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTP 76
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G DV L HGAD ++++
Sbjct: 77 LHLAARNGNLDVV-------------------------------KLLLKHGADVNARDKD 105
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G+TPL L +++
Sbjct: 106 GRTPLHLAAKNGHLEVVK 123
Score = 88.2 bits (219), Expect = 2e-20
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 667 IKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVES 726
+DE L A G VK L + G TPLH A + IV+
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN---GHLEIVKL 58
Query: 727 LIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK 786
L+ KGA +N ++K+ P+HLAA G+LDV+ LL+ GA VN D G+T LH A++
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118
Query: 787 TQAVRVLL 794
+ V++LL
Sbjct: 119 LEVVKLLL 126
Score = 82.0 bits (203), Expect = 2e-18
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 1071 NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL- 1128
N D TPLH AA+ G ++V+LLL++GAD + K+ DG TPL L + G ++ LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 1129 -----------RGNSALLDAAKKGNLGRVQKLLTA-DNINCRDAQGRNSTPLHLAAGEKR 1176
GN+ L AA+ GNL V+ LL ++N RD GR TPLHLAA +
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR--TPLHLAA-KNG 117
Query: 1177 HLLMCR 1182
HL + +
Sbjct: 118 HLEVVK 123
Score = 79.0 bits (195), Expect = 3e-17
Identities = 58/162 (35%), Positives = 72/162 (44%), Gaps = 46/162 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+ G + VV LL + + N +D DGR TPLH AA + +V+ LL GADV
Sbjct: 11 LHLAASNGHLEVVKLLLENGADV-NAKDNDGR--TPLHLAAKNGHLEIVKLLLEKGADV- 66
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
NA DK G TPLH AA+ G + LL L +
Sbjct: 67 ---NARDKDGNTPLHLAARNGNLDVVKLL----------------------------LKH 95
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV 564
VNARD GR TPLH AA GH EV ++L+
Sbjct: 96 GADVNARDKDGR--TPLHLAA---------KNGHLEVVKLLL 126
Score = 75.5 bits (186), Expect = 4e-16
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A GH E+ ++L++ GA+VNA D TPLH AA L+V LLL GAD
Sbjct: 40 GRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV 99
Query: 274 TLHNCHSKSAIDVA 287
+ ++ + +A
Sbjct: 100 NARDKDGRTPLHLA 113
Score = 72.0 bits (177), Expect = 7e-15
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GA+VN D TPLH AA G D+V+LLL+HGAD + +++DG TPL L + G
Sbjct: 60 LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119
Query: 1123 DVSDLL 1128
+V LL
Sbjct: 120 EVVKLL 125
Score = 66.6 bits (163), Expect = 6e-13
Identities = 32/74 (43%), Positives = 43/74 (58%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A S GH EV ++L++ GA+VNA D TPLH AA LE+ LLL +GAD
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66
Query: 274 TLHNCHSKSAIDVA 287
+ + + +A
Sbjct: 67 NARDKDGNTPLHLA 80
Score = 63.2 bits (154), Expect = 1e-11
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLL 267
G PLH A G+ +V ++L+K GA+VNA D TPLH AA LEV LLL
Sbjct: 73 GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 62.4 bits (152), Expect = 2e-11
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
N ++++ P+HLAA GHL+V+ LL GA VN D G+T LH A++ + V++LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 795 SHNAD 799
AD
Sbjct: 61 EKGAD 65
Score = 57.8 bits (140), Expect = 6e-10
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 41/166 (24%)
Query: 597 NLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCC 656
N ++ DG+T L L A +G + +LL
Sbjct: 1 NARDEDGRTPLHL------AASNGHLEVVKLL---------------------------- 26
Query: 657 CKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTS 715
+E KD L A + G VK L VN + G+TPLH A +
Sbjct: 27 --LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHLAARN 83
Query: 716 PYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
+V+ L++ GA +N ++K+ P+HLAA GHL+V+ LL
Sbjct: 84 GNLD---VVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 51.6 bits (124), Expect = 8e-08
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLL 44
G DVV+ LL GA ++ARD G PLH A GH +VV+LLL
Sbjct: 83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 43.9 bits (104), Expect = 4e-05
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 241 NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA-------PTRELQ 293
NA D TPLH AAS LEV LLL GAD + ++ + +A + L
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 294 QR-----LSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPL 338
++ ++ L A R G+ VK L G TPL
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPL 110
Score = 43.1 bits (102), Expect = 8e-05
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLL 1097
+KHGA+VN D TPLH AA G ++V+LLL
Sbjct: 93 LKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 33.1 bits (76), Expect = 0.25
Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 35/92 (38%)
Query: 51 NTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAH 110
N RD TPLH AA+ G +V L +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVV-------------------------------KLLLEN 29
Query: 111 GADPFLKNQEGQTPLDLTVAED----VRSLLQ 138
GAD K+ +G+TPL L V+ LL+
Sbjct: 30 GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Score = 32.0 bits (73), Expect = 0.56
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 768 NLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
N D G+T LH A + + V++LL + AD +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK 36
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 88.9 bits (221), Expect = 3e-18
Identities = 100/370 (27%), Positives = 144/370 (38%), Gaps = 81/370 (21%)
Query: 443 AGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPL 502
A V V LLA GADV+ + +G TPLH L S D +
Sbjct: 22 ASNVTVEEVRRLLAAGADVNFRGE----YGKTPLH-----------LYLHYSSEKVKDIV 66
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM 562
R L EA G D VNA + G TPLH L+NA + +V ++
Sbjct: 67 RLLLEA--GAD------------VNAPERCG--FTPLHLY-----LYNATTL---DVIKL 102
Query: 563 LVKHGANVNVADLWKFTPLH---------EAAAKALLQHGADINLKNTDGKTALDLAVPC 613
L+K GA+VN D TPLH + LL+ GAD+N + G T L + +
Sbjct: 103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162
Query: 614 TRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKG 673
A + ELL ++ G Y D L+
Sbjct: 163 RNANV-------ELLR--LLIDAGADVY-----AVDD------RFRSLL----------- 191
Query: 674 HCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
H L++ + V++ + + G+TPLH T KR ++V L+ G
Sbjct: 192 HHHLQSFKP-RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKR-SLVLPLLIAGIS 249
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+N +N+ P+H AA + L+ LGA +N V G T L R++ +AVR
Sbjct: 250 INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAA 309
Query: 794 LSHNADTSIV 803
L+ N V
Sbjct: 310 LAKNPSAETV 319
Score = 62.3 bits (152), Expect = 9e-10
Identities = 55/195 (28%), Positives = 74/195 (37%), Gaps = 50/195 (25%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNR--VAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
VN DL G TPL V ++ L+ GADV++ D+ + LH Q
Sbjct: 145 VNALDLYGM--TPLAVLLKSRNANVELLRLLIDAGADVYAVDDR----FRSLLHHHLQ-- 196
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
S +REL A G D A D G TPLH A
Sbjct: 197 ----------SFKPRARIVRELIRA--GCD------------PAATDMLGN--TPLHSMA 230
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADI 596
++C + L+ G ++N + + TPLH AA L+ GADI
Sbjct: 231 ----TGSSCKRS---LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI 283
Query: 597 NLKNTDGKTALDLAV 611
N ++DG T L L V
Sbjct: 284 NAVSSDGNTPLSLMV 298
Score = 59.7 bits (145), Expect = 6e-09
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH--LAADLGHLDVLDTLLR 762
G TPLH + +++ LI+ GA +N K+K P+H L+ + V+ LLR
Sbjct: 83 GFTPLHLYLY--NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLL-SHNADTSIVSLLV 807
GA VN +D+ G T L VLL S NA+ ++ LL+
Sbjct: 141 KGADVNALDLYGMTPLA------------VLLKSRNANVELLRLLI 174
Score = 59.7 bits (145), Expect = 6e-09
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGK---ADIVRLLLQHGADPSKKNRDGATPLD-LVRE 1119
+K GA+VN D TPLH G ++RLLL+ GAD + + G TPL L++
Sbjct: 104 IKAGADVNAKDKVGRTPLH-VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162
Query: 1120 GDQDVS--DLL------------RGNSAL---LDAAKKGNLGRVQKLLTADNINCRDAQG 1162
+ +V LL R S L L + K R+ + L +
Sbjct: 163 RNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA--RIVRELIRAGCDPAATDM 220
Query: 1163 RNSTPLHLAA 1172
+TPLH A
Sbjct: 221 LGNTPLHSMA 230
Score = 58.5 bits (142), Expect = 1e-08
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADV--VRLLLEADANPNTRDNWNFTP 60
V+ LL GA ++A D G+ PL +A+V +RLL++A A+ D+ +
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSL 190
Query: 61 LH-------EAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGAD 113
LH A + + G A N ++ + G+ C L G
Sbjct: 191 LHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCK-RSLVLPLLIAGIS 249
Query: 114 PFLKNQEGQTPL 125
+N+ GQTPL
Sbjct: 250 INARNRYGQTPL 261
Score = 53.1 bits (128), Expect = 7e-07
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACS--FGHADVVRLLLEADANPNTRDNWNFTPLH 62
DV++ L+ +GA ++A+D G PLH S + V+RLLL A+ N D + TPL
Sbjct: 98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA 157
Score = 51.9 bits (125), Expect = 1e-06
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 50/269 (18%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLH----NACSFGHADVVRLLLEADANPNTRDNWNF 58
KD+V LL +GA ++A + G PLH NA + DV++LL++A A+ N +D
Sbjct: 62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAKDKVGR 118
Query: 59 TPLHEAAAKGK---TDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH---KDRSC------ 106
TPLH G V I + + + + +YG+ P+ K R+
Sbjct: 119 TPLH-VYLSGFNINPKV-IRLLLRKGADVNALDLYGMT-----PLAVLLKSRNANVELLR 171
Query: 107 -YLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNT 165
+ GAD + + ++ L Q + + + T
Sbjct: 172 LLIDAGADVYAVDDRFRSLL-------------HHHLQSFKPRARIVRELIRAGCDPAAT 218
Query: 166 SCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYG 225
N L A S S S+ PL + + + + G PLH A +
Sbjct: 219 DMLGNTPLHSMATGS-SCKRSLV-------LPLLIAGISINARN--RYGQTPLHYAAVFN 268
Query: 226 HFEVTEMLIKAGANVNAMDLWQFTPLHEA 254
+ LI GA++NA+ TPL
Sbjct: 269 NPRACRRLIALGADINAVSSDGNTPLSLM 297
Score = 50.0 bits (120), Expect = 6e-06
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD--VLDTLLR 762
+ LH + S P R IV LIR G + P+H A ++ LL
Sbjct: 187 FRSLLHHHLQSFKP-RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI 245
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
G +N + GQT LH A + +A R L++ AD + VS
Sbjct: 246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS 287
Score = 48.9 bits (117), Expect = 1e-05
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADI--VRLLLQHGADPSKKNRDGATPLD------ 1115
++ GA+VN DL+ TPL A++ +RLL+ GAD + + L
Sbjct: 139 LRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198
Query: 1116 ---------LVREGDQDVSDLLRGNSALLDAAKKGNLGR--VQKLLTAD-NINCRDAQGR 1163
L+R G + + GN+ L A + R V LL A +IN R+ G+
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258
Query: 1164 NSTPLHLAAG 1173
TPLH AA
Sbjct: 259 --TPLHYAAV 266
Score = 48.1 bits (115), Expect = 2e-05
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGH--ADVVRLLLEADANPNTRDNWNFTPLH 62
+++ L+ +GA ++A DD LH+ A +VR L+ A +P D TPLH
Sbjct: 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH 227
Query: 63 EAAAKGKTDVCIGIYFAEHSSKSN-QYVYGIGGGTGCPMH------KDRSCY--LAHGAD 113
A + + N + YG P+H R+C +A GAD
Sbjct: 228 SMATGSSCKRSLVLPLLIAGISINARNRYGQT-----PLHYAAVFNNPRACRRLIALGAD 282
Query: 114 PFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAET 153
+ +G TPL L V + ++ A+A+ P A + A T
Sbjct: 283 INAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAAT 322
Score = 47.7 bits (114), Expect = 3e-05
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGH---ADVVRLLLEADANPNTRDNWNFTPL 61
+ V LLA+GA ++ R + G PLH + D+VRLLLEA A+ N + FTPL
Sbjct: 28 EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPL 87
Query: 62 H 62
H
Sbjct: 88 H 88
Score = 46.9 bits (112), Expect = 5e-05
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEA-AQKGR 484
+N R+ G+ TPLH+AA +N L+A GAD+ NA G TPL
Sbjct: 250 INARNRYGQ--TPLHYAAVFNNPRACRRLIALGADI----NAVSSDGNTPLSLMVRNNNG 303
Query: 485 TQLSALLPLSPSA 497
+ A L +PSA
Sbjct: 304 RAVRAALAKNPSA 316
Score = 46.9 bits (112), Expect = 5e-05
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 214 GLVPLH----NACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE-AASKS-RLEVCSLLL 267
G PLH NA + +V ++LIKAGA+VNA D TPLH + + +V LLL
Sbjct: 83 GFTPLHLYLYNATT---LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL 139
Query: 268 SEGADPTLHNCHSKSAIDV 286
+GAD + + + + V
Sbjct: 140 RKGADVNALDLYGMTPLAV 158
Score = 46.6 bits (111), Expect = 6e-05
Identities = 37/100 (37%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGK---ADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
+ GA+VN + TPLH DIVRLLL+ GAD + R G TPL L
Sbjct: 34 LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN 93
Query: 1121 DQ--DVSDLLRGNSALLDAAKKGNLGR--VQKLLTADNIN 1156
DV LL A D K +GR + L+ NIN
Sbjct: 94 ATTLDVIKLLIKAGA--DVNAKDKVGRTPLHVYLSGFNIN 131
Score = 43.5 bits (103), Expect = 5e-04
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 217 PLHNACSYG---HFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR---LEVCSLLLSEG 270
PLH G + +V +L++ GA+VNA+DL+ TPL KSR +E+ LL+ G
Sbjct: 120 PLH-VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA-VLLKSRNANVELLRLLIDAG 177
Query: 271 ADPT 274
AD
Sbjct: 178 ADVY 181
Score = 41.2 bits (97), Expect = 0.003
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 217 PLHNACSYGHFEVTEM---LIKAGANVNAMDLWQFTPLH-EAASKSRLEVCSLLLSEGAD 272
PLH Y +V ++ L++AGA+VNA + FTPLH + + L+V LL+ GAD
Sbjct: 50 PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD 109
Score = 40.0 bits (94), Expect = 0.008
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
G ++N + + TPLH AA R L+ GAD + + DG TPL L+
Sbjct: 246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM-------- 297
Query: 1126 DLLRGNSALLDAAKKGN 1142
+ N + AA N
Sbjct: 298 -VRNNNGRAVRAALAKN 313
Score = 40.0 bits (94), Expect = 0.008
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 212 ALGLVPLHNACSYGHFEVTEM--LIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSE 269
LG PLH+ + + + + L+ AG ++NA + + TPLH AA + C L++
Sbjct: 220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279
Query: 270 GADPTL 275
GAD
Sbjct: 280 GADINA 285
Score = 37.3 bits (87), Expect = 0.050
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 25/112 (22%)
Query: 1063 NVKHGANVNVADLWKFTPLHEAAAKG--KADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
++ G + D+ TPLH A K +V LL G + +NR G TPL
Sbjct: 208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHY---- 263
Query: 1121 DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTA-DNINCRDAQGRNSTPLHLA 1171
AA N ++L+ +IN + G TPL L
Sbjct: 264 ----------------AAVFNNPRACRRLIALGADINAVSSDGN--TPLSLM 297
Score = 33.1 bits (76), Expect = 1.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 227 FEVTEMLIKAGANVNAMDLWQFTPLH---EAASKSRLEVCSLLLSEGAD 272
E L+ AGA+VN + TPLH +S+ ++ LLL GAD
Sbjct: 27 VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD 75
Score = 30.4 bits (69), Expect = 6.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 228 EVTEMLIKAGANVNAMDLWQFTPLHEAA--SKSRLEVCSLLLSEGADPTLHNCHSKSAID 285
E+ +LI AGA+V A+D + LH K R + L+ G DP + + +
Sbjct: 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH 227
Query: 286 VAPT 289
T
Sbjct: 228 SMAT 231
Score = 30.4 bits (69), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 37 ADVVRLLLEADANPNTRDNWNFTPLH 62
+ VR LL A A+ N R + TPLH
Sbjct: 27 VEEVRRLLAAGADVNFRGEYGKTPLH 52
Score = 30.0 bits (68), Expect = 9.3
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+ L+A GA I+A G PL + VR L + + T
Sbjct: 267 FNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA 321
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 80.0 bits (198), Expect = 4e-18
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 505 LFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV 564
L A K G+L VK L+ A G T LH AA G+ E+ ++L+
Sbjct: 1 LHLAAKNGNLELVKLLLEK---GADVNLGDTDTALHLAA---------RNGNLEIVKLLL 48
Query: 565 KHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKN 600
+HGA+VN D T LH AA K LL+HGADINLK+
Sbjct: 49 EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 74.6 bits (184), Expect = 3e-16
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++V+ LL GA ++ D LH A G+ ++V+LLLE A+ N +D T
Sbjct: 7 NGNLELVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTA 64
Query: 61 LHEAAAKGKTDVC 73
LH AA G ++
Sbjct: 65 LHLAARNGNLEIV 77
Score = 72.7 bits (179), Expect = 2e-15
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
LH A G+ E+ ++L++ GA+VNA D T LH AA LE+ LLL GAD L
Sbjct: 31 ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Query: 277 N 277
+
Sbjct: 91 D 91
Score = 72.3 bits (178), Expect = 2e-15
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKN 600
LH A G+ E+ ++L++ GA+VN+ D T LH AA K LL+HGAD+N K+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 601 TDGKTALDLAV 611
DG TAL LA
Sbjct: 59 KDGNTALHLAA 69
Score = 71.5 bits (176), Expect = 5e-15
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 709 LHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
LH A + + +V+ L+ KGA +N + + +HLAA G+L+++ LL GA VN
Sbjct: 1 LHLAAKNGNLE---LVKLLLEKGADVNLGDTDT--ALHLAARNGNLEIVKLLLEHGADVN 55
Query: 769 LVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
D G TALH AR+ + V++LL H AD ++
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 68.8 bits (169), Expect = 3e-14
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+K G++ +V LL G T LH AA + +V+ LL HGADV
Sbjct: 1 LHLAAKNGNLELVKLLLEK-----GADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV- 54
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALL 491
NA DK G T LH AA+ G ++ LL
Sbjct: 55 ---NAKDKDGNTALHLAARNGNLEIVKLL 80
Score = 63.4 bits (155), Expect = 3e-12
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD 54
G ++V+ LL GA ++A+D G LH A G+ ++V+LLLE A+ N +D
Sbjct: 38 NGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 61.9 bits (151), Expect = 9e-12
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
L A + G+ VK L + T DT LH A + IV+ L+ GA +N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGA-DVNLGDT-DTALHLAARN---GNLEIVKLLLEHGADVN 55
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVD 771
K+K+ +HLAA G+L+++ LL GA +NL D
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 61.9 bits (151), Expect = 9e-12
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
LH A G+ E+ ++L++ GA+VN D T LH AA LE+ LLL GAD +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 278 CHSKSAIDVA 287
+A+ +A
Sbjct: 59 KDGNTALHLA 68
Score = 60.7 bits (148), Expect = 2e-11
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GA+VN+ D T LH AA G +IV+LLL+HGAD + K++DG T L L R G+
Sbjct: 17 LEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNL 74
Query: 1123 DVSDLL 1128
++ LL
Sbjct: 75 EIVKLL 80
Score = 56.9 bits (138), Expect = 6e-10
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
++HGA+VN D T LH AA G +IV+LLL+HGAD + K+
Sbjct: 48 LEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 56.5 bits (137), Expect = 7e-10
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 387 KKLLQEPPSVVDLESQ--LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAG 444
K LL++ V ++ L A++ G++ +V LL + N +D DG T LH AA
Sbjct: 14 KLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-NAKDKDGN--TALHLAAR 70
Query: 445 YNRVAVVEYLLAHGADVHSKD 465
+ +V+ LL HGAD++ KD
Sbjct: 71 NGNLEIVKLLLEHGADINLKD 91
Score = 56.1 bits (136), Expect = 1e-09
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 25/93 (26%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
LH AA G ++V+LLL+ GAD + + D +AL AA+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD----------------------TALHLAARN 38
Query: 1141 GNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
GNL V+ LL ++N +D G T LHLAA
Sbjct: 39 GNLEIVKLLLEHGADVNAKDKDGN--TALHLAA 69
Score = 53.4 bits (129), Expect = 1e-08
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 33/98 (33%)
Query: 28 LHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQ 87
LH A G+ ++V+LLLE A+ N D T LH AA G ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIV-------------- 44
Query: 88 YVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L HGAD K+++G T L
Sbjct: 45 -----------------KLLLEHGADVNAKDKDGNTAL 65
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 82.2 bits (203), Expect = 5e-16
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 49/205 (23%)
Query: 413 TVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWG 472
+T+LL S +N +D + +T LH+A + E LL++GA+V N DK
Sbjct: 147 AEITKLLLSYGADINMKDRH-KGNTALHYATENKDQRLTELLLSYGANV----NIPDKTN 201
Query: 473 FTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTA 532
+PLH A + + L E N + +ARD
Sbjct: 202 NSPLHHAVKHYN--------------KPIVHILLE--------------NGASTDARDKC 233
Query: 533 GRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNV-ADLWKFTPLH-----EAAA 586
G +TPLH + G Y++ ++L++HG +VN + + T LH E
Sbjct: 234 G--NTPLHISVGYCK--------DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKL 283
Query: 587 KALLQHGADINLKNTDGKTALDLAV 611
K LL++GADIN N+ T L AV
Sbjct: 284 KLLLEYGADINSLNSYKLTPLSSAV 308
Score = 59.5 bits (144), Expect = 7e-09
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 37/207 (17%)
Query: 438 PLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ-LSALLP-LSP 495
PLH A + VV+ LL G +V N D TPLH ++ + ++ ++
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNV----NQPDHRDLTPLHIICKEPNKLGMKEMIRSINK 95
Query: 496 SAANDPLRELFEACKGGDLTKVK-------------KLVNPQTVNARDTAGRKSTPLHFA 542
+ L + +A ++ K LV + D + T L +
Sbjct: 96 CSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLS 155
Query: 543 AGL-----------VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA----- 586
G LH A +TE+L+ +GANVN+ D +PLH A
Sbjct: 156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP 215
Query: 587 --KALLQHGADINLKNTDGKTALDLAV 611
LL++GA + ++ G T L ++V
Sbjct: 216 IVHILLENGASTDARDKCGNTPLHISV 242
Score = 58.7 bits (142), Expect = 1e-08
Identities = 65/286 (22%), Positives = 101/286 (35%), Gaps = 52/286 (18%)
Query: 207 SGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
S A + +PLH A + +V + L+ G NVN D TPLH + +
Sbjct: 30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEM 89
Query: 267 LSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVV 326
+ + + + +A + K LT+
Sbjct: 90 IRS---------------------INKCSVFYTLVA--IKDAFNNRNVEIFKIILTN--- 123
Query: 327 NFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVR---EHRDNGQSGGYTALQVAG 383
+K+ T D D + E + A + H+ N TAL A
Sbjct: 124 RYKNIQTIDLVYIDKKSKD-DIIEAEITKLLLSYGADINMKDRHKGN------TALHYAT 176
Query: 384 ENSKKLLQE-------PPSVVDL--ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
EN + L E ++ D S L A K + +V LL + + RD G
Sbjct: 177 ENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCG- 234
Query: 435 HSTPLHFAAGY-NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEA 479
+TPLH + GY +++ LL HG DV++K G T LH +
Sbjct: 235 -NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL---GLTALHSS 276
Score = 54.5 bits (131), Expect = 2e-07
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+N K + G+T LH A + + + E L+ GA++N +K +P+H A + +
Sbjct: 160 INMKDRHKGNTALHYATENKDQR---LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216
Query: 757 LDTLLRLGAKVNLVDVLGQTALH-RTARDDKTQAVRVLLSHNADTSIVSLLVIFS 810
+ LL GA + D G T LH +++LL H D + S ++ +
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLT 271
Score = 54.5 bits (131), Expect = 3e-07
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
+ E LL+ GA+++ D PLH+A + +V +LLE A+ + RD TPLH +
Sbjct: 182 RLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241
Query: 65 AAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH------KDRSCYLAHGADPFLKN 118
K D I EH N Y I G T +H + L +GAD N
Sbjct: 242 VGYCK-DYDILKLLLEHGVDVNAKSY-ILGLT--ALHSSIKSERKLKLLLEYGADINSLN 297
Query: 119 QEGQTPLDLTV 129
TPL V
Sbjct: 298 SYKLTPLSSAV 308
Score = 48.0 bits (114), Expect = 2e-05
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 1090 ADIVRLLLQHGADPSKKNRD-GATPLDLVREG-DQDVSDLL-----------RGN-SALL 1135
A+I +LLL +GAD + K+R G T L E DQ +++LL + N S L
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH 206
Query: 1136 DAAKKGNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAG 1173
A K N V LL + + RD G +TPLH++ G
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCG--NTPLHISVG 243
Score = 48.0 bits (114), Expect = 3e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 1036 QLSMAGGLETGTKKKKKN---MYYGT------LTPHNVKHGANVNVADLWKFTPLHEAAA 1086
+L ++ G + K + K ++Y T LT + +GANVN+ D +PLH A
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210
Query: 1087 KGKADIVRLLLQHGADPSKKNRDGATPL 1114
IV +LL++GA +++ G TPL
Sbjct: 211 HYNKPIVHILLENGASTDARDKCGNTPL 238
Score = 46.8 bits (111), Expect = 6e-05
Identities = 68/310 (21%), Positives = 104/310 (33%), Gaps = 74/310 (23%)
Query: 501 PLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG---------LVPLHNA 551
P L +A + +L VK L+ + N R TPLH ++ N
Sbjct: 37 PFIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINK 95
Query: 552 CSYGHYEVTEMLVKHGANVNVA--------------------DLWKFTPLHEAAAKALLQ 591
CS + V + NV + K + K LL
Sbjct: 96 CSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLS 155
Query: 592 HGADINLKNTD-GKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDI 650
+GADIN+K+ G TAL A ++K + L E G
Sbjct: 156 YGADINMKDRHKGNTALHYA---------TENKDQRLTELLLSYGAN------------- 193
Query: 651 GWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPL 709
I D+ L A + + V L + + + G+TPL
Sbjct: 194 --------------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC-GNTPL 238
Query: 710 HCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL-LAPIHLAADLGHLDVLDTLLRLGAKVN 768
H +V Y K I++ L+ G +N K+ L L +H + + L LL GA +N
Sbjct: 239 HISVG--YCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADIN 294
Query: 769 LVDVLGQTAL 778
++ T L
Sbjct: 295 SLNSYKLTPL 304
Score = 45.6 bits (108), Expect = 1e-04
Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 26/180 (14%)
Query: 5 DVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
++ + LL+ GA I+ +D G LH A + LLL AN N D N +PLH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207
Query: 64 AAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH------KDRSC---YLAHGADP 114
A + + I +S + G P+H KD L HG D
Sbjct: 208 AVKHYNKPI-VHILLENGASTDARDKCG-----NTPLHISVGYCKDYDILKLLLEHGVDV 261
Query: 115 FLKNQ-EGQTPLDLTV-AEDVRSLLQDAMAQYPGAPSCAETASVPPPS----QYSNTSCG 168
K+ G T L ++ +E LL +Y + + + P S QY + G
Sbjct: 262 NAKSYILGLTALHSSIKSERKLKLL----LEYGADINSLNSYKLTPLSSAVKQYLCINIG 317
Score = 44.9 bits (106), Expect = 3e-04
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSF-GHADVVRLLLEADANPNTRDN-WNFTP 60
K +V LL +GAS ARD G PLH + + D+++LLLE + N + T
Sbjct: 213 NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA 272
Query: 61 LHEA 64
LH +
Sbjct: 273 LHSS 276
Score = 42.2 bits (99), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 214 GLVPLHNACSY-GHFEVTEMLIKAGANVNAMD-LWQFTPLHEAASKSRLEVCSLLLSEGA 271
G PLH + Y +++ ++L++ G +VNA + T LH + R LLL GA
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGA 291
Query: 272 DPTLHNCHSKSAIDVA 287
D N + + + A
Sbjct: 292 DINSLNSYKLTPLSSA 307
Score = 39.9 bits (93), Expect = 0.009
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 1064 VKHGANVNV-ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
++HG +VN + + T LH + ++LLL++GAD + N TPL
Sbjct: 255 LEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 37.9 bits (88), Expect = 0.032
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKA-DIVRLLLQHGADPSKKNR-DGATPLDLVREGD 1121
+++GA+ + D TPLH + K DI++LLL+HG D + K+ G T L +
Sbjct: 221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK-S 279
Query: 1122 QDVSDLL 1128
+ LL
Sbjct: 280 ERKLKLL 286
Score = 37.2 bits (86), Expect = 0.052
Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 72/240 (30%)
Query: 37 ADVVRLLLE--ADANPNTRDNWNFTPLHEAAAKGKTDVC--IGIYFAEHSS--KSNQYVY 90
A++ +LLL AD N R N T LH A + + Y A + K+N
Sbjct: 147 AEITKLLLSYGADINMKDRHKGN-TALHYATENKDQRLTELLLSYGANVNIPDKTNNS-- 203
Query: 91 GIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSC 150
P+H Y N+ V LL++
Sbjct: 204 --------PLHHAVKHY----------NKPI-----------VHILLENG---------- 224
Query: 151 AETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQA 210
AS + NT P S + L LE + + ++
Sbjct: 225 ---ASTDARDKCGNT----------PLHISVGYCKDYDI------LKLLLEHGVDVNAKS 265
Query: 211 VALGLVPLHNACSYGHFE-VTEMLIKAGANVNAMDLWQFTPLHEAASK-SRLEVCSLLLS 268
LGL LH++ E ++L++ GA++N+++ ++ TPL A + + + +L+S
Sbjct: 266 YILGLTALHSSI---KSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILIS 322
Score = 32.9 bits (75), Expect = 1.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
PLH A + DVV+ LL N N D+ + TPLH
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLH 75
Score = 30.2 bits (68), Expect = 8.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 1071 NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
A L F PLH+A D+V+ LL G + ++ + TPL ++
Sbjct: 31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII 77
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 77.4 bits (190), Expect = 3e-14
Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 38/265 (14%)
Query: 559 VTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDGKTALDLAV 611
+ EML++ GA+VN D++ TP+H AA + LL +GAD+N+ D + L+ AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 612 PCT-----RAVL---SGDHKKE-ELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELM 662
+A++ S +K + LL+A R D+ + +
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIR--------------NEDLE--TSLLLYDAG 263
Query: 663 FMPRIKDEFKGHCLLEACRQGDPSR-VKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKR 720
F D+ K L A + SR V K L VN K+ G+TPL+ + Y
Sbjct: 264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN-IKGETPLYLMAKNGYDTE 322
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLAADLG-HLDVLDTLLRLGAKVNLVDVLGQTALH 779
+ +LI GA +N ++ + P+H A+ L + D++ TLL LGA VN D +T +H
Sbjct: 323 N--IRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH 380
Query: 780 RTARDDKTQAVRVLLSHNADTSIVS 804
A + + LL + AD +S
Sbjct: 381 YAAVRNNVVIINTLLDYGADIEALS 405
Score = 64.7 bits (157), Expect = 2e-10
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 446 NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSA-----AND 500
+ + + E LL GADV NA D + TP+H AA++G ++ LL LS A A D
Sbjct: 156 DELLIAEMLLEGGADV----NAKDIYCITPIHYAAERGNAKMVNLL-LSYGADVNIIALD 210
Query: 501 PLRELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEV 559
L L A ++ +K ++ N +N D + L A E
Sbjct: 211 DLSVLECAVDSKNIDTIKAIIDNRSNINKND---------------LSLLKAIRNEDLET 255
Query: 560 TEMLVKHGANVNVADLWKFTPLHEAA--------AKALLQHGADINLKNTDGKTALDL 609
+ +L G +VN D K TPLH A+ LL+ GAD+N KN G+T L L
Sbjct: 256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYL 313
Score = 55.8 bits (134), Expect = 1e-07
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 49/236 (20%)
Query: 392 EPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAA--GYNRVA 449
+ PS+ L +LLE +G D VN +++ G TPL+ A GY+
Sbjct: 282 QAPSLSRLVPKLLE--RGAD--------------VNAKNIKGE--TPLYLMAKNGYD-TE 322
Query: 450 VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFE-- 507
+ L+ GADV NA D+ TPLH+A+ R + ++ L AN R+ +
Sbjct: 323 NIRTLIMLGADV----NAADRLYITPLHQASTLDRNK-DIVITLLELGANVNARDYCDKT 377
Query: 508 ----ACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
A ++ + L++ + + + T LHFA C Y + L
Sbjct: 378 PIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFAL--------CGTNPYMSVKTL 428
Query: 564 VKHGANVNVADLWKFTPLHEAAA--------KALLQHGADINLKNTDGKTALDLAV 611
+ GANVN + TPLH A + LL +GAD+N N + L +A+
Sbjct: 429 IDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL 484
Score = 49.7 bits (118), Expect = 8e-06
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 48/176 (27%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
VN RD + TP+H+AA N V ++ LL +GAD+ + + K G T LH
Sbjct: 368 VNARDYCDK--TPIHYAAVRNNVVIINTLLDYGADIEA---LSQKIG-TALH-------- 413
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
F C VK L++ + N STPLH+A
Sbjct: 414 --------------------FALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYAC-- 450
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL-----HEAAAKALLQHGADI 596
C +V EML+ +GA+VN ++ PL + LL +GA++
Sbjct: 451 ---KKNCK---LDVIEMLLDNGADVNAINIQNQYPLLIALEYHGIVNILLHYGAEL 500
Score = 49.3 bits (117), Expect = 1e-05
Identities = 62/226 (27%), Positives = 90/226 (39%), Gaps = 54/226 (23%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVA-VVEYLLAHGADV 461
LL+A + D+ + LL VN +D +TPLH A+ ++ +V LL GADV
Sbjct: 244 LLKAIRNEDLET-SLLLYDAGFSVN--SIDDCKNTPLHHASQAPSLSRLVPKLLERGADV 300
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
NA + G TPL+ A+ G + +R L G D+ +L
Sbjct: 301 ----NAKNIKGETPLYLMAKNGYD-------------TENIRTLIM--LGADVNAADRLY 341
Query: 522 NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM-LVKHGANVNVADLWKFTP 580
PLH A + + + L++ GANVN D TP
Sbjct: 342 I-----------------------TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP 378
Query: 581 LHEAAAK-------ALLQHGADINLKNTDGKTALDLAVPCTRAVLS 619
+H AA + LL +GADI + TAL A+ T +S
Sbjct: 379 IHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS 424
Score = 49.3 bits (117), Expect = 1e-05
Identities = 71/270 (26%), Positives = 113/270 (41%), Gaps = 43/270 (15%)
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA- 584
VNA+D TP+H+AA G+ ++ +L+ +GA+VN+ L + L A
Sbjct: 171 VNAKDIYCI--TPIHYAA---------ERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 585 ------AAKALLQHGADIN---------LKNTDGKTALDLAVPCTRAVLSGDHKKEELLE 629
KA++ + ++IN ++N D +T+L L +V S D K L
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSL-LLYDAGFSVNSIDDCKNTPLH 278
Query: 630 AARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVK 689
A L R L + IK E + + + + R
Sbjct: 279 HA-SQAPSLSRLVPKLLERGAD----------VNAKNIKGETPLYLMAKNGYDTENIRTL 327
Query: 690 KFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAA 749
L +DV Y TPLH A T + K IV +L+ GA++N ++ PIH AA
Sbjct: 328 IMLGADVNAADRLY--ITPLHQAST--LDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383
Query: 750 DLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
++ +++TLL GA + + TALH
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALH 413
Score = 48.9 bits (116), Expect = 1e-05
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 229 VTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+ EML++ GA+VNA D++ TP+H AA + ++ +LLLS GAD
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD 203
Score = 48.9 bits (116), Expect = 2e-05
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL--------- 1114
++ GA+VN D++ TP+H AA +G A +V LLL +GAD + D + L
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224
Query: 1115 DLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
D ++ + S++ + + +LL A + +L LL + +TPLH A+
Sbjct: 225 DTIKAIIDNRSNINKNDLSLLKAIRNEDL-ETSLLLYDAGFSVNSIDDCKNTPLHHAS 281
Score = 48.5 bits (115), Expect = 2e-05
Identities = 82/341 (24%), Positives = 124/341 (36%), Gaps = 76/341 (22%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN-------------- 51
+ E LL GA ++A+D + P+H A G+A +V LLL A+ N
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 52 -------------TRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGC 98
R N N L A D+ + + N I
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNS----IDDCKNT 275
Query: 99 PMHKDRSC---------YLAHGADPFLKNQEGQTPLDLTV-----AEDVRSLLQDAMAQY 144
P+H L GAD KN +G+TPL L E++R+L+
Sbjct: 276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML----- 330
Query: 145 PGAP-SCAETASVPPPSQYSNT-----------SCGDNVSL-----PPPAQYSGSGGDSV 187
GA + A+ + P Q S G NV+ P Y+ ++V
Sbjct: 331 -GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVR-NNV 388
Query: 188 SLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQ 247
+ T +E + G A+ L C + + LI GANVN+ +
Sbjct: 389 VIINTLLDYGADIEALSQKIGTALHFAL------CGTNPYMSVKTLIDRGANVNSKNKDL 442
Query: 248 FTPLHEAASKS-RLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
TPLH A K+ +L+V +LL GAD N ++ + +A
Sbjct: 443 STPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483
Score = 48.1 bits (114), Expect = 3e-05
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 707 TPLHCAV--TSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLG-HLDVLDTLLRL 763
T LH A+ T+PY V++LI +GA++N KNK+L P+H A LDV++ LL
Sbjct: 410 TALHFALCGTNPYMS----VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465
Query: 764 GAKVNLVDVLGQTAL 778
GA VN +++ Q L
Sbjct: 466 GADVNAINIQNQYPL 480
Score = 45.1 bits (106), Expect = 2e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 723 IVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTA 782
I E L+ GA +N K+ + PIH AA+ G+ +++ LL GA VN++ + + L
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 783 RDDKTQAVRVLLSH--NADTSIVSLL 806
++ ++ + N + + +SLL
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLL 245
Score = 44.3 bits (104), Expect = 4e-04
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 1067 GANVNVADLWKFTPLHEAA-AKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
G +VN D K TPLH A+ A + +V LL+ GAD + KN G TPL L+ + D
Sbjct: 263 GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTE 322
Query: 1126 DL--LRGNSALLDAAKKGNLGRVQKLLTAD--------------NINCRDAQGRNSTPLH 1169
++ L A ++AA + + + + T D N+N RD + TP+H
Sbjct: 323 NIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK--TPIH 380
Query: 1170 LAA 1172
AA
Sbjct: 381 YAA 383
Score = 42.7 bits (100), Expect = 0.001
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 733 HLNEKNK--ELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAV 790
H ++ N+ E + I L + + LL GA VN D+ T +H A + V
Sbjct: 135 HYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMV 194
Query: 791 RVLLSHNADTSIVSL--LVIFSCSTN 814
+LLS+ AD +I++L L + C+ +
Sbjct: 195 NLLLSYGADVNIIALDDLSVLECAVD 220
Score = 39.3 bits (91), Expect = 0.014
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 1056 YGTLTPHNVK----HGANVNVADLWKFTPLHEAAAKG-KADIVRLLLQHGADPSKKNRDG 1110
GT +VK GANVN + TPLH A K K D++ +LL +GAD + N
Sbjct: 417 CGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQN 476
Query: 1111 ATPLDLVREGDQDVSDLLRGNSALLDA 1137
PL + E V+ LL + L D+
Sbjct: 477 QYPLLIALEYHGIVNILLHYGAELRDS 503
Score = 37.7 bits (87), Expect = 0.042
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD 1102
GANVN D TP+H AA + I+ LL +GAD
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400
Score = 36.6 bits (84), Expect = 0.084
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 214 GLVPLHNACSYGH-FEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL-EVCSLLLSEGA 271
G PL+ G+ E LI GA+VNA D TPLH+A++ R ++ LL GA
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGA 366
Query: 272 DPTLHNCHSKSAIDVAPTR 290
+ + K+ I A R
Sbjct: 367 NVNARDYCDKTPIHYAAVR 385
Score = 34.7 bits (79), Expect = 0.41
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGK-ADIVRLLLQHGADPSKKNRDGATPL 1114
+ GA+VN AD TPLH+A+ + DIV LL+ GA+ + ++ TP+
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 71.6 bits (176), Expect = 7e-13
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 690 KFLTSDVVNFK-HPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK-ELL----- 742
++L + N G+ LH + S K I++ LI KG +N KN+ L
Sbjct: 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLK-ILKLLIDKGVDINAKNRVNYLLSYGV 183
Query: 743 ----------APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
P+H A + + + LL LGA NLV+ G T LH ++ + ++
Sbjct: 184 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243
Query: 793 LLSHNADTS-IVSLLVIFSCSTNLGLKHLLELFERE---QITLDILAEMNHEDLKQVGVS 848
LL++ I+ L+ F +L +++ ++ LD N + ++ S
Sbjct: 244 LLNNGPSIKTIIETLLYFK-DKDLNTITKIKMLKKSIMYMFLLDPGFYKNRKLIENS-KS 301
Query: 849 AYGYRHKLLKGIEKL 863
++ K IE++
Sbjct: 302 LKDVINECEKEIERM 316
Score = 68.5 bits (168), Expect = 8e-12
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
K+ V YLL+ G I+ +D G PLH A + + V+ LL+ ANPN + + TPLH
Sbjct: 172 KNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 231
Query: 64 AAAK 67
A
Sbjct: 232 AILN 235
Score = 67.0 bits (164), Expect = 3e-11
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 42/185 (22%)
Query: 426 VNCRDLDGRHSTPLHFAAGY--NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
N D TPL +A N ++VEYLL +GA+V N + G LH +
Sbjct: 97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV----NIKNSDGENLLHLYLESN 152
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDL---TKVKKLVNPQT-VNARDTAGRKSTPL 539
+ L L+ L + KG D+ +V L++ +N +D G TPL
Sbjct: 153 KIDL------------KILKLLID--KGVDINAKNRVNYLLSYGVPINIKDVYG--FTPL 196
Query: 540 HFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA-------KALLQH 592
H A + E + L+ GAN N+ + + TPLH A K LL +
Sbjct: 197 H---------YAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 247
Query: 593 GADIN 597
G I
Sbjct: 248 GPSIK 252
Score = 66.6 bits (163), Expect = 3e-11
Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 53/198 (26%)
Query: 435 HSTPLHFAAGYNRVA-----VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSA 489
+STPLH+ + +V+ LL +GA+V NA D G TPL A K S
Sbjct: 68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV----NAPDNNGITPLLYAISKKSNSYSI 123
Query: 490 LLPLSPSAAN--------DPLRELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLH 540
+ L + AN + L L+ DL +K L++ +NA++
Sbjct: 124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN---------- 173
Query: 541 FAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHG 593
L+ +G +N+ D++ FTPLH A K LL G
Sbjct: 174 ------------------RVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215
Query: 594 ADINLKNTDGKTALDLAV 611
A+ NL N G T L +A+
Sbjct: 216 ANPNLVNKYGDTPLHIAI 233
Score = 65.8 bits (161), Expect = 5e-11
Identities = 50/192 (26%), Positives = 69/192 (35%), Gaps = 57/192 (29%)
Query: 423 PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQK 482
+ + PL+ A + VV+ LL +GAD++S + TPLH
Sbjct: 25 DDLNDYSYKK--PVLPLYLAKEARNIDVVKILLDNGADINSSTK-NN---STPLHY---- 74
Query: 483 GRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV-----NPQTVNARDTAGRKST 537
LS N LT VK++V VNA D G T
Sbjct: 75 ----------LSNIKYN--------------LTDVKEIVKLLLEYGANVNAPDNNG--IT 108
Query: 538 PLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA---------AKA 588
PL +A + Y + E L+ +GANVN+ + LH K
Sbjct: 109 PLLYAI-------SKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKL 161
Query: 589 LLQHGADINLKN 600
L+ G DIN KN
Sbjct: 162 LIDKGVDINAKN 173
Score = 63.1 bits (154), Expect = 4e-10
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 57/251 (22%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------------AKALLQHG 593
+PL+ A + +V ++L+ +GA++N + TPLH + K LL++G
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96
Query: 594 ADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARM--------MGGGLHRYTWPL 645
A++N + +G T L A+ S + E L LH Y
Sbjct: 97 ANVNAPDNNGITPLLYAISKK----SNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--- 149
Query: 646 GTTDIGWCSCCCK----MELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFK 700
++L+ + + A +RV L+ V +N K
Sbjct: 150 --------ESNKIDLKILKLLIDKGVD--------INAK-----NRVNYLLSYGVPINIK 188
Query: 701 HPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTL 760
Y G TPLH AV + P+ V+ L+ GA+ N NK P+H+A + ++ L
Sbjct: 189 DVY-GFTPLHYAVYNNNPE---FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244
Query: 761 LRLGAKVNLVD 771
L G + +
Sbjct: 245 LNNGPSIKTII 255
Score = 60.4 bits (147), Expect = 3e-09
Identities = 68/248 (27%), Positives = 94/248 (37%), Gaps = 45/248 (18%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEA 308
PL+ A ++V +LL GAD +S + + P L N
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADI-----NSSTKNNSTPLHYLSNIKYNL--------- 82
Query: 309 CRQGDPSRVKKFLTSDVVNFKHPY-TGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREH 367
D + K L N P G TPL I S+ + + A V
Sbjct: 83 ---TDVKEIVKLLLEYGANVNAPDNNGITPL--LYAISKKSNSYSIVEYLLDNGANVNIK 137
Query: 368 RDNGQSGGYTALQVAGENSKKLLQEPPSVVDLE-SQLLEASKGGD---MTVVTRLLSSCP 423
S G L + E++K +DL+ +LL KG D V LLS
Sbjct: 138 N----SDGENLLHLYLESNK---------IDLKILKLL-IDKGVDINAKNRVNYLLSYGV 183
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
I N +D+ G TPLH+A N V+YLL GA+ N +K+G TPLH A
Sbjct: 184 PI-NIKDVYG--FTPLHYAVYNNNPEFVKYLLDLGANP----NLVNKYGDTPLHIAILNN 236
Query: 484 RTQLSALL 491
++ LL
Sbjct: 237 NKEIFKLL 244
Score = 59.3 bits (144), Expect = 6e-09
Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 30/153 (19%)
Query: 1043 LETGTKKKKKNMYYGTLTP----------HNV-------KHGANVNVADLWKFTPLHEAA 1085
L+ G T ++GANVN D TPL A
Sbjct: 55 LDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114
Query: 1086 AK--GKADIVRLLLQHGADPSKKNRDGATPLDLVREG---DQDVSDLLRGNSALLDAAKK 1140
+K IV LL +GA+ + KN DG L L E D + LL ++A
Sbjct: 115 SKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN- 173
Query: 1141 GNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
RV LL+ IN +D TPLH A
Sbjct: 174 ----RVNYLLSYGVPINIKDV--YGFTPLHYAV 200
Score = 54.3 bits (131), Expect = 3e-07
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 695 DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGH- 753
+ ++K P PL+ A + + +V+ L+ GA +N K P+H +++ +
Sbjct: 28 NDYSYKKPVL---PLYLAKEA---RNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYN 81
Query: 754 ----LDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQA--VRVLLSHNADTSIVS 804
+++ LL GA VN D G T L V LL + A+ +I +
Sbjct: 82 LTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN 138
Score = 53.9 bits (130), Expect = 3e-07
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 55/258 (21%)
Query: 504 ELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG--LVPLHNACSYGHYEVTE 561
L+ A + ++ VK L++ + + STPLH+ + E+ +
Sbjct: 38 PLYLAKEARNIDVVKILLD-NGADINSSTKNNSTPLHYLSNIKYNLTDVK------EIVK 90
Query: 562 MLVKHGANVNVADLWKFTPLHEAAAKA---------LLQHGADINLKNTDGKTALDLAVP 612
+L+++GANVN D TPL A +K LL +GA++N+KN+DG+ L L
Sbjct: 91 LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL--- 147
Query: 613 CTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELM----FMPRIK 668
L + ++L+ DI + ++ + IK
Sbjct: 148 ----YLESNKIDLKILK------------LLIDKGVDI---NAKNRVNYLLSYGVPINIK 188
Query: 669 DEFKGHCLLEACRQGDPSRVKKFLTS----DVVNFKHPYTGDTPLHCAVTSPYPKRKAIV 724
D + L A +P VK L ++VN GDTPLH A+ K I
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN----KYGDTPLHIAI---LNNNKEIF 241
Query: 725 ESLIRKGAHLNEKNKELL 742
+ L+ G + + LL
Sbjct: 242 KLLLNNGPSIKTIIETLL 259
Score = 53.5 bits (129), Expect = 4e-07
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
+G +N+ D++ FTPLH A + V+ LL GA+P+ N+ G TPL
Sbjct: 180 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229
Score = 51.2 bits (123), Expect = 2e-06
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 707 TPLHCAVTSPY--PKRKAIVESLIRKGAHLNEKNKELLAPIHLAAD--LGHLDVLDTLLR 762
TPLH Y K IV+ L+ GA++N + + P+ A +++ LL
Sbjct: 70 TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD 129
Query: 763 LGAKVNLVDVLGQTALHRTAR--DDKTQAVRVLLSHNADTSI---VSLLVIFSCSTN 814
GA VN+ + G+ LH + +++L+ D + V+ L+ + N
Sbjct: 130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPIN 186
Score = 50.0 bits (120), Expect = 5e-06
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACS--FGHADVVRLLLEADANPNTRDNWNFTPL 61
K++V+ LL GA+++A D+ G+ PL A S +V LL+ AN N +++ L
Sbjct: 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR-SCYLAHGADPFLKNQE 120
H K D+ I + N K+R + L++G +K+
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINA--------------KNRVNYLLSYGVPINIKDVY 191
Query: 121 GQTPLDLTV 129
G TPL V
Sbjct: 192 GFTPLHYAV 200
Score = 49.3 bits (118), Expect = 9e-06
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A + E + L+ GAN N ++ + TPLH A + E+ LLL+ G
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250
Score = 48.5 bits (116), Expect = 2e-05
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHA-----DVVRLLLEADANPNTRDNWN 57
DVV+ LL +GA I++ PLH + + ++V+LLLE AN N DN
Sbjct: 47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106
Query: 58 FTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
TPL A +K I Y ++ + N
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVN 135
Score = 47.7 bits (114), Expect = 3e-05
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 214 GLVPLHNACSYGH--FEVTEMLIKAGANVNAM----------------DLWQFTPLHEAA 255
G LH ++ ++LI G ++NA D++ FTPLH A
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200
Query: 256 SKSRLEVCSLLLSEGADPTLHNC 278
+ E LL GA+P L N
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNK 223
Score = 45.8 bits (109), Expect = 1e-04
Identities = 51/240 (21%), Positives = 79/240 (32%), Gaps = 81/240 (33%)
Query: 228 EVTEMLIKAGANVNAMDLWQFTPLHEAASKSR--LEVCSLLLSEGADPTLHNCHSKSAID 285
E+ ++L++ GANVNA D TPL A SK + LL GA+ + N ++ +
Sbjct: 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL- 145
Query: 286 VAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLPGT--- 341
H LE+ + D +K + V +N K
Sbjct: 146 -----------------HLYLESNKI-DLKILKLLIDKGVDINAK-----------NRVN 176
Query: 342 LLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLES 401
L+ I + + G+T L A N+ P V
Sbjct: 177 YLLSYGVP----INIKDVY--------------GFTPLHYAVYNNN------PEFVKY-- 210
Query: 402 QLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADV 461
LL+ G + N + G TPLH A N + + LL +G +
Sbjct: 211 -LLD--LGAN--------------PNLVNKYG--DTPLHIAILNNNKEIFKLLLNNGPSI 251
Score = 40.4 bits (95), Expect = 0.005
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 1076 WKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSAL 1134
K PL+ A D+V++LL +GAD + ++ +TPL +
Sbjct: 33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL----------------HYLS 76
Query: 1135 LDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTLGKSFLQFNA 1194
++ + KLL N TPL A +K ++ + L N
Sbjct: 77 NIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKK----SNSYSIVEYLLD-NG 131
Query: 1195 IKM 1197
+
Sbjct: 132 ANV 134
Score = 40.0 bits (94), Expect = 0.007
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 214 GLVPLHNACSY--GHFEVTEMLIKAGANVNAMDLWQFTPLHEAAS--KSRLEVCSLLLSE 269
G+ PL A S + + E L+ GANVN + LH K L++ LL+ +
Sbjct: 106 GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK 165
Query: 270 GAD 272
G D
Sbjct: 166 GVD 168
Score = 38.9 bits (91), Expect = 0.016
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+ V+YLL GA+ + + G PLH A + ++ +LLL + T
Sbjct: 202 NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256
Score = 35.4 bits (82), Expect = 0.20
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNR 1108
GAN N+ + + TPLH A +I +LLL +G
Sbjct: 215 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256
Score = 32.3 bits (74), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
PL+ A + DVV++LL+ A+ N+ N TPLH
Sbjct: 38 PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH 73
Score = 31.9 bits (73), Expect = 2.0
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 720 RKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
+ ++ +I + + K+ + P++LA + ++DV+ LL GA +N T LH
Sbjct: 14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH 73
Query: 780 ------RTARDDKTQAVRVLLSHNAD 799
D K + V++LL + A+
Sbjct: 74 YLSNIKYNLTDVK-EIVKLLLEYGAN 98
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 66.8 bits (162), Expect = 5e-12
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 668 KDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVT--SPYPKRKAIV 724
+D L A +GD VK L S VN K GDTPLH A +P +
Sbjct: 69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVA 127
Query: 725 ESLIRKGAHL---NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRT 781
+ L+ GA L N ++++ P+H AA G D+++ LL GA N + G TAL
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187
Query: 782 ARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLEL 823
A++ + + V++LL S++ + + N+ +++L L
Sbjct: 188 AKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNL 229
Score = 61.4 bits (148), Expect = 3e-10
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 19/189 (10%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHG--ADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLP 492
S L + + +V LL S L A+ +
Sbjct: 5 LSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR 64
Query: 493 LSPSAANDPLRELFEACKGGDLTKVKKLVNPQ-TVNARDTAGRKSTPLHFAAGLVPLHNA 551
+ D L A GD VK L+ VNA+D G TPLH AA L+
Sbjct: 65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG--DTPLHLAA----LNGN 118
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKF---TPLHEAAA-------KALLQHGADINLKNT 601
G+ EV ++L++ GA+++V +L TPLH AA + LL+ GAD N +N+
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS 178
Query: 602 DGKTALDLA 610
G TALD A
Sbjct: 179 YGVTALDPA 187
Score = 61.0 bits (147), Expect = 5e-10
Identities = 52/162 (32%), Positives = 66/162 (40%), Gaps = 37/162 (22%)
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
RDLDGR PLH AA +V+ LLA GADV NA D G TPLH AA G
Sbjct: 67 AARDLDGR--LPLHSAASKGDDKIVKLLLASGADV----NAKDADGDTPLHLAALNGNPP 120
Query: 487 LSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLV 546
+ + L E + N RD G TPLH+AA
Sbjct: 121 EGN---------IEVAKLLLE-----------AGADLDVNNLRDEDGN--TPLHWAAL-- 156
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA 588
G ++ E+L++ GA+ N + + T L AA
Sbjct: 157 -------NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191
Score = 56.4 bits (135), Expect = 1e-08
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 GRKDVVEYLLASGAS---IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNF 58
G +V + LL +GA + RD+ G PLH A G AD+V LLLEA A+PN+R+++
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181
Query: 59 TPLHEAAAKGKTDV 72
T L AA G+ ++
Sbjct: 182 TALDPAAKNGRIEL 195
Score = 55.2 bits (132), Expect = 4e-08
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 1071 NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRG 1130
DL PLH AA+KG IV+LLL GAD + K+ DG TPL L +
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 1131 NSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHLLMCRVTL 1185
LL+A D N RD G TPLH AA + + L
Sbjct: 127 AKLLLEAGADL-----------DVNNLRDEDGN--TPLHWAALN-GDADIVELLL 167
Score = 54.4 bits (130), Expect = 8e-08
Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 39/135 (28%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGH-----ADVVRLLLEADA---NPNT 52
G +V+ LLASGA ++A+D G PLH A G+ +V +LLLEA A N
Sbjct: 83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142
Query: 53 RDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGA 112
RD TPLH AA G D+ L GA
Sbjct: 143 RDEDGNTPLHWAALNGDADIV-------------------------------ELLLEAGA 171
Query: 113 DPFLKNQEGQTPLDL 127
DP +N G T LD
Sbjct: 172 DPNSRNSYGVTALDP 186
Score = 50.6 bits (120), Expect = 1e-06
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 414 VVTRLLS--SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKW 471
V LL + + N RD DG TPLH+AA +VE LL GAD +S+++ +
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGN--TPLHWAALNGDADIVELLLEAGADPNSRNS----Y 179
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
G T L AA+ GR +L LL L L+ E +++K L
Sbjct: 180 GVTALDPAAKNGRIELVKLL-LDKGLHLSLLKFNLEGVANANVSKRNIL 227
Score = 48.7 bits (115), Expect = 6e-06
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
+ G +PLH+A S G ++ ++L+ GA+VN D TPLH AA
Sbjct: 61 IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120
Query: 586 ------AKALLQHGA---DINLKNTDGKTALDLAV 611
AK LL+ GA NL++ DG T L A
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Score = 48.3 bits (114), Expect = 8e-06
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 691 FLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAAD 750
S+ + K + L A + K IV+ HL ++ + P+H AA
Sbjct: 29 LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVD------RHLAARDLDGRLPLHSAAS 82
Query: 751 LGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQ-----AVRVLLSHNADTSI 802
G ++ LL GA VN D G T LH A + ++LL AD +
Sbjct: 83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139
Score = 48.3 bits (114), Expect = 9e-06
Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-REG 1120
N+ D TPLH AA G ADIV LLL+ GADP+ +N G T LD + G
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191
Query: 1121 DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
++ LL K +L ++ L N N N T L +A
Sbjct: 192 RIELVKLLL--------DKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235
Score = 47.9 bits (113), Expect = 1e-05
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 16 SIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIG 75
+ ARD G PLH+A S G +V+LLL + A+ N +D TPLH AA G
Sbjct: 65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP---- 120
Query: 76 IYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAED 132
E + + + + G A L++++G TPL
Sbjct: 121 ----EGNIEVAKLLLEAG---------------ADLDVNNLRDEDGNTPLHWAALNG 158
Score = 44.4 bits (104), Expect = 2e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE--------------- 45
G D+VE LL +GA ++R+ G+ L A G ++V+LLL+
Sbjct: 157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGV 216
Query: 46 ADANPNTRDNWNFTPLHEA 64
A+AN + R+ N T L A
Sbjct: 217 ANANVSKRNILNLTSLIIA 235
Score = 44.0 bits (103), Expect = 2e-04
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGK-----ADIVRLLLQHGA---DPSKKNRDGATP 1113
+ GA+VN D TPLH AA G ++ +LLL+ GA + ++ DG TP
Sbjct: 91 LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150
Query: 1114 LDL-VREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
L GD D+ +LL A + N R++ G T L AA
Sbjct: 151 LHWAALNGDADIVELLLEAGA--------------------DPNSRNSYGV--TALDPAA 188
Query: 1173 GEKRH---LLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMG 1209
R L+ L S L+FN +A+A +++
Sbjct: 189 KNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILN 228
Score = 41.3 bits (96), Expect = 0.002
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G PLH A G ++ E+L++AGA+ N+ + + T L AA R+E+ LLL +G
Sbjct: 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203
Score = 39.4 bits (91), Expect = 0.007
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 20/135 (14%)
Query: 209 QAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL-----EVC 263
G +PLH+A S G ++ ++L+ +GA+VNA D TPLH AA EV
Sbjct: 68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVA 127
Query: 264 SLLLSEGADPTLHNCHSKS-------AIDVAPTRELQQRLS--------NEFKGHCLLEA 308
LLL GAD ++N + A ++ L N + L A
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187
Query: 309 CRQGDPSRVKKFLTS 323
+ G VK L
Sbjct: 188 AKNGRIELVKLLLDK 202
Score = 30.2 bits (67), Expect = 6.5
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+ GD +V LL + N R+ G T L AA R+ +V+ LL G +
Sbjct: 151 LHWAALNGDADIVELLLEAGADP-NSRNSYGV--TALDPAAKNGRIELVKLLLDKGLHLS 207
Query: 463 S-----------KDNATDKWGFTPLHEA 479
+ + T L A
Sbjct: 208 LLKFNLEGVANANVSKRNILNLTSLIIA 235
Score = 29.8 bits (66), Expect = 8.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 226 HFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ + ++ A DL PLH AASK ++ LLL+ GAD
Sbjct: 52 SLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV 99
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 65.0 bits (158), Expect = 1e-10
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 56/221 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
+L++ L A K GD+ + L VN D +G + P+H A +N +++ LL
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCY--PIHIAIKHNFFDIIKLLLEK 179
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
GA + KDN G +PLH AA + GD +
Sbjct: 180 GAYANVKDN----NGESPLHNAA-----------------------------EYGDYACI 206
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
K L++ + + TPLH A +HN E+L+ + A++N D+
Sbjct: 207 KLLID-HGNHIMNKCKNGFTPLHNAI----IHNR------SAIELLINN-ASINDQDIDG 254
Query: 578 FTPLHEA--------AAKALLQHGADINLKNTDGKTALDLA 610
TPLH A LL H ADI++K+ G+ +D A
Sbjct: 255 STPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295
Score = 63.4 bits (154), Expect = 3e-10
Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 73/271 (26%)
Query: 410 GDMTVVTRLLSSCPHIVNCRDLDGRHS-TPLHFAAGYNRVAVVEYLLAHGADV-HSKDNA 467
GD+ + +++ + NC ++ + TPL A +VE + HGAD+ H
Sbjct: 12 GDIEAIEKIIKN---KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI 68
Query: 468 TDKWGFTPLHEAAQKGRTQL----------SALLPLSPSAANDPLRELFE---------- 507
PL A + G + +++LP+ P D ++ + +
Sbjct: 69 PH-----PLLTAIKIGAHDIIKLLIDNGVDTSILPI-PCIEKDMIKTILDCGIDVNIKDA 122
Query: 508 --------ACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAA--------------- 543
A K GDL +K L VN D G P+H A
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG--CYPIHIAIKHNFFDIIKLLLEKG 180
Query: 544 ---------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-----AAKAL 589
G PLHNA YG Y ++L+ HG ++ FTPLH A +A L
Sbjct: 181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIEL 240
Query: 590 LQHGADINLKNTDGKTALDLAV--PCTRAVL 618
L + A IN ++ DG T L A+ PC ++
Sbjct: 241 LINNASINDQDIDGSTPLHHAINPPCDIDII 271
Score = 55.7 bits (134), Expect = 8e-08
Identities = 74/294 (25%), Positives = 117/294 (39%), Gaps = 57/294 (19%)
Query: 199 ALETVIMPSGQAVALGL----VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEA 254
A+E +I G + + + PL +A G ++ E+ IK GA++N ++ PL A
Sbjct: 16 AIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA 75
Query: 255 ASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDP 314
++ LL+ G D + + P +++ +
Sbjct: 76 IKIGAHDIIKLLIDNGVDTS-----------ILPIPCIEKDM------------------ 106
Query: 315 SRVKKFLTSDV-VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQS 373
+K L + VN K D L L + D E I + E A V DNG
Sbjct: 107 --IKTILDCGIDVNIK-----DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY 159
Query: 374 GGYTALQVAGENSKKLLQEPPSVVDL-----ESQLLEASKGGDMTVVTRLLSSCPHIVN- 427
+ A++ + KLL E + ++ ES L A++ GD + L+ HI+N
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219
Query: 428 CRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
C+ TPLH A +NR A+ LL + A + N D G TPLH A
Sbjct: 220 CK----NGFTPLHNAIIHNRSAIE--LLINNASI----NDQDIDGSTPLHHAIN 263
Score = 50.7 bits (121), Expect = 4e-06
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
+ ++ L GA ++ DD G +P+H A D+++LLLE A N +DN +PLH A
Sbjct: 138 ESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNA 197
Query: 65 AAKG 68
A G
Sbjct: 198 AEYG 201
Score = 49.6 bits (118), Expect = 8e-06
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGD-Q 1122
++GA+VN+ D P+H A DI++LLL+ GA + K+ +G +PL + GD
Sbjct: 145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA 204
Query: 1123 DVSDLLRGNSALLDAAKKG----------NLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
+ L+ + +++ K G N ++ L+ +IN +D G STPLH A
Sbjct: 205 CIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDG--STPLHHA 261
Score = 49.2 bits (117), Expect = 1e-05
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
D+++ LL GA + +D+ G PLHNA +G ++LL++ + + FTPLH A
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230
Query: 65 AAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH--------KD-RSCYLAHGADPF 115
++ + + I + ++ I G T P+H D L H AD
Sbjct: 231 IIHNRSAIELLI------NNASINDQDIDGST--PLHHAINPPCDIDIIDILLYHKADIS 282
Query: 116 LKNQEGQTPLDLTVAEDVR-SLLQDAMA 142
+K+ +G+ P+D + +++D +A
Sbjct: 283 IKDNKGENPIDTAFKYINKDPVIKDIIA 310
Score = 47.7 bits (113), Expect = 3e-05
Identities = 71/322 (22%), Positives = 116/322 (36%), Gaps = 81/322 (25%)
Query: 512 GDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
GD+ ++K++ + N + + ++T PL +A G ++ E+ +KHGA++N
Sbjct: 12 GDIEAIEKIIKNKG-NCINISVDETT--------TPLIDAIRSGDAKIVELFIKHGADIN 62
Query: 572 VADLWKFTPLHEA------------------------------AAKALLQHGADINLKNT 601
+ PL A K +L G D+N+K+
Sbjct: 63 HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA 122
Query: 602 DGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMEL 661
+ KT L A+ K+ LE+ +M L Y + D C
Sbjct: 123 ELKTFLHYAI------------KKGDLESIKM----LFEYGADVNIEDDNGC-------- 158
Query: 662 MFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRK 721
+ H A + +K L G++PLH A Y
Sbjct: 159 ---------YPIHI---AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE--YGDYA 204
Query: 722 AIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRT 781
I + LI G H+ K K P+H A + + ++ L+ A +N D+ G T LH
Sbjct: 205 CI-KLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAIELLIN-NASINDQDIDGSTPLHHA 261
Query: 782 ARDD-KTQAVRVLLSHNADTSI 802
+ +LL H AD SI
Sbjct: 262 INPPCDIDIIDILLYHKADISI 283
Score = 43.8 bits (103), Expect = 4e-04
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVS 1125
G +VN+ D T LH A KG + +++L ++GAD + ++ +G P+ + ++ D+
Sbjct: 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII 173
Query: 1126 DLL------------RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
LL G S L +AA+ G+ ++ L+ N + + TPLH A
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGFTPLHNA 230
Score = 38.0 bits (88), Expect = 0.028
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1068 ANVNVADLWKFTPLHEA-AAKGKADIVRLLLQHGADPSKKNRDGATPLD 1115
A++N D+ TPLH A DI+ +LL H AD S K+ G P+D
Sbjct: 245 ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPID 293
Score = 37.6 bits (87), Expect = 0.035
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG ++ L+ G I + G PLHNA + + LL+ +A+ N +D TP
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLIN-NASINDQDIDGSTP 257
Query: 61 LHEA 64
LH A
Sbjct: 258 LHHA 261
Score = 34.2 bits (78), Expect = 0.50
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPS-----KKNRDGATPLDLVR 1118
+KHGA++N + PL A G DI++LL+ +G D S +D + +
Sbjct: 55 IKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD---MIKTIL 111
Query: 1119 EGDQDVSDLLRGNSALLD-AAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLA 1171
+ DV+ L A KKG+L ++ L AD +N D G P+H+A
Sbjct: 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNG--CYPIHIA 164
Score = 32.6 bits (74), Expect = 1.3
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATP-LDLVREGDQDVSDLLRGN 1131
TPL +A G A IV L ++HGAD + N P L ++ G D+ LL N
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDN 90
Score = 32.2 bits (73), Expect = 1.6
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
KD+++ +L G ++ +D LH A G + +++L E A+ N D+ P+H
Sbjct: 104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163
Query: 64 AAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHK-----DRSC---YLAHGADPF 115
A D+ I + E + +N P+H D +C + HG
Sbjct: 164 AIKHNFFDI-IKL-LLEKGAYANVKDNNGES----PLHNAAEYGDYACIKLLIDHGNHIM 217
Query: 116 LKNQEGQTPL 125
K + G TPL
Sbjct: 218 NKCKNGFTPL 227
Score = 31.9 bits (72), Expect = 2.6
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 20/118 (16%)
Query: 1043 LETGTKKKKKNMYYGTLTPHN-------------VKHGANVNVADLWKFTPLHEAAAKGK 1089
LE G K+ G HN + HG ++ FTPLH A +
Sbjct: 177 LEKGAYANVKD-NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR 235
Query: 1090 ADIVRLLLQHGADPSKKNRDGATPLD--LVREGDQDVSDLLRGNSALLDAAKKGNLGR 1145
+ I LL + A + ++ DG+TPL + D D+ D+L + A D + K N G
Sbjct: 236 SAIE--LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA--DISIKDNKGE 289
Score = 31.1 bits (70), Expect = 3.9
Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 25/149 (16%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLL------------------ 43
G +VE + GA I+ + HPL A G D+++LL
Sbjct: 46 GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD 105
Query: 44 -----LEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI--YFAEHSSKSNQYVYGIGGGT 96
L+ + N +D T LH A KG + + Y A+ + + + Y I
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165
Query: 97 GCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L GA +K+ G++PL
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPL 194
>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ). SAM (Sterile
Alpha Motif) domain is a module consisting of
approximately 70 amino acids. This domain is found in
the Fungi/Metazoa group and in a restricted number of
bacteria. Proteins with SAM domains are represented by a
wide variety of domain architectures and have different
intracellular localization, including nucleus, cytoplasm
and membranes. SAM domains have diverse functions. They
can interact with proteins, RNAs and membrane lipids,
contain site of phosphorylation and/or kinase docking
site, and play a role in protein homo and hetero
dimerization/oligomerization in processes ranging from
signal transduction to regulation of transcription.
Mutations in SAM domains have been linked to several
diseases.
Length = 56
Score = 56.5 bits (137), Expect = 3e-10
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEK 862
LGL+ +LF + +I D L + EDLK++G+++ G+R K+L+ I++
Sbjct: 9 LGLEQYADLFRKNEIDGDALLLLTDEDLKELGITSPGHRKKILRAIQR 56
>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif).
Length = 66
Score = 55.0 bits (133), Expect = 1e-09
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQIT-LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++GL + F + IT ++L + EDLK +G+++ G+R K+LK I++L
Sbjct: 15 SIGLPQYADNFRDQGITGGELLLRLTEEDLKALGITSVGHRKKILKKIQRL 65
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 54.2 bits (131), Expect = 2e-09
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
T LH AA R+ +V+YLL G D+ N TD+ G T LH AA+ G ++ LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDI----NRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 53.4 bits (129), Expect = 3e-09
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
G LH A G ++V+ LLE + N D T LH AA G +V
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50
Score = 53.4 bits (129), Expect = 4e-09
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLL 267
LH A G E+ + L++ G ++N D T LH AA LEV LLL
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 52.2 bits (126), Expect = 8e-09
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLL 44
GR ++V+YLL G I+ D+ G LH A G+ +V++LLL
Sbjct: 11 SGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 47.2 bits (113), Expect = 5e-07
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
T LH+AA G+ ++V+ LL+ G D ++ + DG T L + AA
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHI--------------------AA 42
Query: 1139 KKGNLGRVQKLL 1150
+ GNL ++ LL
Sbjct: 43 ENGNLEVLKLLL 54
Score = 44.2 bits (105), Expect = 6e-06
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 742 LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+H AA G L+++ LL G +N D G TALH A + + +++LL
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 43.8 bits (104), Expect = 8e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK 587
LH A G E+ + L++ G ++N D T LH AA
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN 44
Score = 38.8 bits (91), Expect = 5e-04
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
G T LH A S + +V+ L+ KG +N +++ +H+AA+ G+L+VL LL
Sbjct: 1 GRTALHKAAISGRLE---LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLL 455
L +A+ G + +V LL +N D DG T LH AA + V++ LL
Sbjct: 5 LHKAAISGRLELVKYLLEK-GVDINRTDEDGN--TALHIAAENGNLEVLKLLL 54
Score = 37.6 bits (88), Expect = 0.001
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 579 TPLHEAAA-------KALLQHGADINLKNTDGKTALDLAV 611
T LH+AA K LL+ G DIN + DG TAL +A
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAA 42
Score = 36.8 bits (86), Expect = 0.002
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G +AL AA G L V+ LL +IN D G T LH+AA
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN--TALHIAA 42
Score = 34.9 bits (81), Expect = 0.012
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLL 1097
++ G ++N D T LH AA G ++++LLL
Sbjct: 21 LEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 33.8 bits (78), Expect = 0.032
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 502 LRELFEACKGGDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVT 560
L +A G L VK L+ +N D G T LH AA G+ EV
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGN--TALHIAA---------ENGNLEVL 50
Query: 561 EMLV 564
++L+
Sbjct: 51 KLLL 54
Score = 32.2 bits (74), Expect = 0.13
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 21/73 (28%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEA 308
T LH+AA RLE+ LL +G D ++E L A
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDIN---------------------RTDEDGNTALHIA 41
Query: 309 CRQGDPSRVKKFL 321
G+ +K L
Sbjct: 42 AENGNLEVLKLLL 54
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 214 GLVPLHNACSYGHFEVTEMLI 234
G LH A G+ EV ++L+
Sbjct: 34 GNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 52.4 bits (126), Expect = 9e-09
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1064 VKHG-ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
++HG ++N D TPLH AA G ++V+ LL+ G D + ++ DG T LDL
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 52.0 bits (125), Expect = 1e-08
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 15 ASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
++A D G PLH A +G ++V+ LL+ + N RD+ T L A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 47.7 bits (114), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Query: 563 LVKHG-ANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
L++HG ++N D TPLH AA + LL+ G D+NL+++DG TALDLA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 46.6 bits (111), Expect = 9e-07
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEA 479
++ DG +TPLH AA Y + +V++LL G D+ N D G T L A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL----NLRDSDGLTALDLA 56
Score = 41.6 bits (98), Expect = 5e-05
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 233 LIKAG-ANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
L++ G ++NA D TPLH AA LE+ LL G D L + +A+D+A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 38.1 bits (89), Expect = 9e-04
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 727 LIRKG-AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
L+ G LN + P+HLAA G L+++ LL+ G +NL D G TAL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 35.4 bits (82), Expect = 0.010
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEA 254
G PLH A YG E+ + L+K G ++N D T L A
Sbjct: 16 GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 34.3 bits (79), Expect = 0.020
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 31/86 (36%)
Query: 42 LLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH 101
LL + N D TPLH AA G ++ +
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELV--QWL----------------------- 35
Query: 102 KDRSCYLAHGADPFLKNQEGQTPLDL 127
L G D L++ +G T LDL
Sbjct: 36 ------LKPGVDLNLRDSDGLTALDL 55
Score = 33.5 bits (77), Expect = 0.043
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 1116 LVREGDQDVSDL-LRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
L+ G D++ GN+ L AAK G L VQ LL ++N RD+ G T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL--TALDLA 56
Score = 32.7 bits (75), Expect = 0.084
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNA 31
YG ++V++LL G ++ RD GL L A
Sbjct: 26 YGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 31.9 bits (73), Expect = 0.16
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLA 748
G+TPLH A +V+ L++ G LN ++ + L + LA
Sbjct: 15 NGNTPLHLAAKY---GALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 30.8 bits (70), Expect = 0.34
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 454 LLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQL 487
LL HG NATD G TPLH AA+ G +L
Sbjct: 1 LLEHGPIDL---NATDGNGNTPLHLAAKYGALEL 31
Score = 30.4 bits (69), Expect = 0.50
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 760 LLRLG-AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
LL G +N D G T LH A+ + V+ LL D
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD 41
>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif. Widespread domain in
signalling and nuclear proteins. In EPH-related tyrosine
kinases, appears to mediate cell-cell initiated signal
transduction via the binding of SH2-containing proteins
to a conserved tyrosine that is phosphorylated. In many
cases mediates homodimerisation.
Length = 68
Score = 51.9 bits (125), Expect = 2e-08
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 815 LGLKHLLELFEREQITLDILAEM-NHEDLKQVGVSAYGYRHKLLKGIEKL 863
+GL+ + F + I +L + + EDLK++G++ G+R K+LK I+KL
Sbjct: 16 IGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKL 65
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 58.4 bits (141), Expect = 2e-08
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVS 1125
GA+ N D TPLH A A G +VR+LL+ GADP+ ++DG TPL+L G ++V
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164
Query: 1126 DLLRGNS 1132
LL +S
Sbjct: 165 QLLSRHS 171
Score = 56.8 bits (137), Expect = 6e-08
Identities = 37/93 (39%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 399 LESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHG 458
L +L + + GD V R+L + NCRD DGR TPLH A V VV LL G
Sbjct: 82 LTVELCQLAASGD-AVGARILLTGGADPNCRDYDGR--TPLHIACANGHVQVVRVLLEFG 138
Query: 459 ADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
AD DK G TPL A + G ++ LL
Sbjct: 139 ADP----TLLDKDGKTPLELAEENGFREVVQLL 167
Score = 52.6 bits (126), Expect = 1e-06
Identities = 29/66 (43%), Positives = 34/66 (51%)
Query: 7 VEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAA 66
LL GA + RD G PLH AC+ GH VVR+LLE A+P D TPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 67 KGKTDV 72
G +V
Sbjct: 158 NGFREV 163
Score = 51.1 bits (122), Expect = 4e-06
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 193 SPPQPLALETVIMPSGQAVALGL-VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPL 251
+P L E VI P VA L V L + G +L+ GA+ N D TPL
Sbjct: 63 TPDHNLTTEEVIDP---VVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPL 119
Query: 252 HEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAP---TRELQQRLSNEFKGHCLLEA 308
H A + ++V +LL GADPTL + K+ +++A RE+ Q LS + H L A
Sbjct: 120 HIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGA 179
Query: 309 CRQGDP-SRVKKFLTSDVVNFKHPYTGDTPLP--GTLLI 344
+ D + L ++ HP P P G+L++
Sbjct: 180 NAKPDSFTGKPPSLEDSPISSHHPDFSAVPQPMMGSLIV 218
Score = 45.3 bits (107), Expect = 2e-04
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 32/123 (26%)
Query: 35 GHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGG 94
G A R+LL A+PN RD TPLH A A G V
Sbjct: 93 GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVV--------------------- 131
Query: 95 GTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETA 154
L GADP L +++G+TPL+L R ++Q ++++
Sbjct: 132 ----------RVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ-LLSRHSQCHFELGAN 180
Query: 155 SVP 157
+ P
Sbjct: 181 AKP 183
Score = 45.3 bits (107), Expect = 2e-04
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 727 LIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK 786
L+ GA N ++ + P+H+A GH+ V+ LL GA L+D G+T L +
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160
Query: 787 TQAVRVLLSH 796
+ V++L H
Sbjct: 161 REVVQLLSRH 170
Score = 39.5 bits (92), Expect = 0.013
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL---------VR---EGDQDVSDLL 1128
L + AA G A R+LL GADP+ ++ DG TPL + VR E D + L
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145
Query: 1129 RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTP 1167
+ L+ A++ V +LL+ + + G N+ P
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRHSQCHFEL-GANAKP 183
Score = 36.4 bits (84), Expect = 0.11
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 58/184 (31%)
Query: 433 GRHSTPLHFAAGYNRVAVVEYLLA----HGADVHSKDNATDKWGFTPLHEAAQKGRTQLS 488
R + P+ F R+A ++ +A H + + +N TP H T+
Sbjct: 26 KRRAKPISF----ERMAAIQEEIARIDTHLEALEATENKDA----TPDHNLT----TEEV 73
Query: 489 ALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVP 547
+ P A+ EL + GD + L+ N RD GR P
Sbjct: 74 ----IDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGR-----------TP 118
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTAL 607
LH AC+ GH +V + LL+ GAD L + DGKT L
Sbjct: 119 LHIACANGHVQV--------------------------VRVLLEFGADPTLLDKDGKTPL 152
Query: 608 DLAV 611
+LA
Sbjct: 153 ELAE 156
Score = 32.9 bits (75), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 760 LLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
LL GA N D G+T LH + Q VRVLL AD +++
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL 144
>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It has been
suggested that SAM is an evolutionarily conserved
protein binding domain that is involved in the
regulation of numerous developmental processes in
diverse eukaryotes. The SAM domain can potentially
function as a protein interaction module through its
ability to homo- and heterooligomerise with other SAM
domains.
Length = 62
Score = 50.3 bits (121), Expect = 5e-08
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+GL + F I D L + EDL ++GV+ G+R K+L I+ L
Sbjct: 13 IGLGQYADNFRAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQGL 61
>gnl|CDD|188922 cd09523, SAM_TAL, SAM domain of TAL subfamily. SAM (sterile alpha
motif) domain of TAL (Tsg101-associated ligase)
proteins, also known as LRSAM1 (Leucine-rich repeat and
sterile alpha motif-containing) proteins, is a putative
protein-protein interaction domain. Proteins of this
subfamily participate in the regulation of retrovirus
budding and receptor endocytosis. They show E3 ubiquitin
ligase activity. Human TAL protein interacts with Tsg101
and TAL's C-terminal ring finger domain is essential for
the multiple monoubiquitylation of Tsg101.
Length = 65
Score = 50.0 bits (120), Expect = 8e-08
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 796 HNADTSIVSLLVIFSCSTNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHK 855
D +V+LL L +H L +F R +IT++ L+ M EDLK++G+ G R +
Sbjct: 2 AGVDPQLVNLLN------ELSAEHYLPVFARHRITMETLSTMTDEDLKKIGIHEIGLRKE 55
Query: 856 LLKGIEKL 863
+L+ ++L
Sbjct: 56 ILRAAQEL 63
>gnl|CDD|188919 cd09520, SAM_BICC1, SAM domain of BICC1 (bicaudal) subfamily. SAM
(sterile alpha motif) domain of BICC1 (bicaudal)
subfamily is a protein-protein interaction domain.
Proteins of this group have N-terminal K homology
RNA-binding vigilin-like repeats and a C-terminal SAM
domain. BICC1 is involved in the regulation of embryonic
differentiation. It plays a role in the regulation of
Dvl (Dishevelled) signaling, particularly in the correct
cilia orientation and nodal flow generation. In
Drosophila, disruption of BICC1 can disturb the normal
migration direction of the anterior follicle cell of
oocytes; the specific function of SAM is to recruit
whole protein to the periphery of P-bodies. In mammals,
mutations in this gene are associated with polycystic
kidney disease and it was suggested that the BICC1
protein can indirectly interact with ANKS6 protein
(ANKS6 is also associated with polycystic kidney
disease) through some protein and RNA intermediates.
Length = 65
Score = 48.4 bits (116), Expect = 3e-07
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 813 TNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
LGL+ ++LF +++I L + +DLK++G++A+G R K+L I +L
Sbjct: 12 AKLGLEKYIDLFAQQEIDLQTFLTLTDQDLKELGITAFGARRKMLLAISEL 62
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a contiguous
spiral stack such that ion transporters like the anion
exchanger associate in a large central cavity formed by
the ANK repeat spiral, while clathrin and cell adhesion
molecules associate with specific regions outside this
cavity.
Length = 33
Score = 47.2 bits (113), Expect = 3e-07
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNR 1108
TPLH AA G ++V+LLL+ GAD + +++
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 46.0 bits (110), Expect = 1e-06
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
G PLH A GH +VV+LLLEA A+ N RD
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 45.2 bits (108), Expect = 2e-06
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDN 466
TPLH AA + VV+ LL GADV+++D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 44.9 bits (107), Expect = 2e-06
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
G PLH A GH EV ++L++ GA+VN D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 44.1 bits (105), Expect = 5e-06
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD 244
G PLH A GH EV ++L++AGA+VNA D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 37.5 bits (88), Expect = 8e-04
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 248 FTPLHEAASKSRLEVCSLLLSEGADPTLHN 277
TPLH AA LEV LLL GAD +
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 37.1 bits (87), Expect = 0.001
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVD 771
P+HLAA GHL+V+ LL GA VN D
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 34.8 bits (81), Expect = 0.008
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 578 FTPLHEAA-------AKALLQHGADINLKN 600
TPLH AA K LL+ GAD+N ++
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 34.8 bits (81), Expect = 0.009
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK 739
G+TPLH A + +V+ L+ GA +N ++K
Sbjct: 2 GNTPLHLAARN---GHLEVVKLLLEAGADVNARDK 33
Score = 31.8 bits (73), Expect = 0.10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 774 GQTALHRTARDDKTQAVRVLLSHNADTSIV 803
G T LH AR+ + V++LL AD +
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 29.4 bits (67), Expect = 0.72
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 YGRKDVVEYLLASGASIHARDD 22
G +VV+ LL +GA ++ARD
Sbjct: 12 NGHLEVVKLLLEAGADVNARDK 33
Score = 27.9 bits (63), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 472 GFTPLHEAAQKGRTQLSALL 491
G TPLH AA+ G ++ LL
Sbjct: 2 GNTPLHLAARNGHLEVVKLL 21
>gnl|CDD|188934 cd09535, SAM_BOI-like_fungal, SAM domain of BOI-like fungal
subfamily. SAM (sterile alpha motif) domain of BOI-like
fungal subfamily is a potential protein-protein
interaction domain. Proteins of this subfamily are
apparently scaffold proteins, since most contain SH3 and
PH domains, which are also protein-protein interaction
domains, in addition to SAM domain. BOI-like proteins
participate in cell cycle regulation. In particular
BOI1 and BOI2 proteins of budding yeast S.cerevisiae are
involved in bud formation, and POB1 protein of fission
yeast S.pombe plays a role in cell elongation and
separation. Among binding partners of BOI-like fungal
subfamily members are such proteins as Bem1 and Cdc42
(they are known to be involved in cell polarization and
bud formation).
Length = 65
Score = 47.9 bits (115), Expect = 3e-07
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 818 KHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ E F +IT DIL E++ EDLK++ + ++G R KL I+ L
Sbjct: 19 DSVCEKFRENEITGDILLELDLEDLKELDIGSFGKRFKLWNEIKSL 64
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 50.8 bits (121), Expect = 3e-06
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 402 QLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA-- 459
L +A G++ + RLL + N DG +P+ A + ++ L+ HGA
Sbjct: 5 ALCDAILFGELDIARRLLDIGIN-PNFEIYDG--ISPIKLAMKFRDSEAIKLLMKHGAIP 61
Query: 460 DVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRE-----LFEACKGGDL 514
DV D + LH+A ++G + L A+D + L A
Sbjct: 62 DVKYPDIES------ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA------ 109
Query: 515 TKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
T +KKL + + AR F+ PLH A G + E+L+ H A +++ D
Sbjct: 110 TILKKLDIMKLLIARGADPDIPNTDKFS----PLHLAVMMGDIKGIELLIDHKACLDIED 165
Query: 575 LWKFTPLHEAAA-------KALLQHGADINLKNTDGKTAL 607
TPL A A K LL GA+I+ +G A
Sbjct: 166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA 205
Score = 50.4 bits (120), Expect = 4e-06
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 45/174 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
D+ES+L +A + GD+ V LL + DG TPLH A ++ +++ L+A
Sbjct: 67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG--MTPLHLATILKKLDIMKLLIAR 124
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
GAD TDK F+PLH A G + LL
Sbjct: 125 GAD--PDIPNTDK--FSPLHLAVMMGDIKGIELL-------------------------- 154
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
+ + ++ D G PL A + G + +ML+ GAN++
Sbjct: 155 --IDHKACLDIED-----------CCGCTPLIIAMAKGDIAICKMLLDSGANID 195
Score = 48.8 bits (116), Expect = 1e-05
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 676 LLEACRQGDPSRVKKFLTS----DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKG 731
L +A +GD V++ L D V +K G TPLH A K+ I++ LI +G
Sbjct: 72 LHDAVEEGDVKAVEELLDLGKFADDVFYK---DGMTPLHLATIL---KKLDIMKLLIARG 125
Query: 732 AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
A + N + +P+HLA +G + ++ L+ A +++ D G T L +
Sbjct: 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185
Query: 792 VLLSHNADTSIVS 804
+LL A+
Sbjct: 186 MLLDSGANIDYFG 198
Score = 46.1 bits (109), Expect = 8e-05
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A G + E+LI A ++ D TPL A +K + +C +LL GA+
Sbjct: 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194
Score = 46.1 bits (109), Expect = 9e-05
Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 48/277 (17%)
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA-------AAKALLQHGADINL 598
V L +A +G ++ L+ G N N +P+ A A K L++HGA ++
Sbjct: 4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV 63
Query: 599 KNTDGKTALDLAVPCTRAVLSGDHKK-EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCC 657
K D ++ AV GD K EELL +G + G T + +
Sbjct: 64 KYPDIES------ELHDAVEEGDVKAVEELL----DLGKFADDVFYKDGMTPLHLATILK 113
Query: 658 KMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPY 717
K+++M L+ D KF +PLH AV
Sbjct: 114 KLDIM-----------KLLIARGADPDIPNTDKF---------------SPLHLAVMM-- 145
Query: 718 PKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ-T 776
+E LI A L+ ++ P+ +A G + + LL GA ++ G
Sbjct: 146 -GDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVA 204
Query: 777 ALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCST 813
AL ++K VR+ + AD +I+ ++ C+
Sbjct: 205 ALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI 241
Score = 45.0 bits (106), Expect = 2e-04
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGNSALLD 1136
TPLH A K DI++LL+ GADP N D +PL L V GD +LL + A LD
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162
Score = 41.1 bits (96), Expect = 0.003
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G D+ LL G + + G+ P+ A F ++ ++LL++ A P+ + +
Sbjct: 12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE 71
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTG-CPMH--------KDRSCYLAHG 111
LH+A +G + E ++ + G P+H +A G
Sbjct: 72 LHDAVEEGD------VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125
Query: 112 ADPFLKNQEGQTPLDLTV 129
ADP + N + +PL L V
Sbjct: 126 ADPDIPNTDKFSPLHLAV 143
Score = 40.7 bits (95), Expect = 0.004
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
D+++ L+A GA + PLH A G + LL++ A + D TPL A
Sbjct: 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA 175
Query: 65 AAKGKTDVC 73
AKG +C
Sbjct: 176 MAKGDIAIC 184
Score = 38.8 bits (90), Expect = 0.018
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDG 1110
+ H A +++ D TPL A AKG I ++LL GA+ ++G
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG 201
Score = 38.4 bits (89), Expect = 0.021
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQ---FTPLHEAASKSRLEVCSLLLSEGADP 273
LH+A G + E L+ G + D++ TPLH A +L++ LL++ GADP
Sbjct: 71 ELHDAVEEGDVKAVEELLDLGKFAD--DVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128
Query: 274 TLHNCHSKSAIDVA 287
+ N S + +A
Sbjct: 129 DIPNTDKFSPLHLA 142
Score = 38.4 bits (89), Expect = 0.023
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDL-WQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PL A + G + +ML+ +GAN++ L A +++++ L + GAD
Sbjct: 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Score = 38.0 bits (88), Expect = 0.031
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 1028 GDVKQGVDQLSMAGGLETGTKKKKKN--MYYGTLTPHN------VKHGANVNVADLWKFT 1079
GDVK V++L G K ++ T+ + GA+ ++ + KF+
Sbjct: 79 GDVKA-VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS 137
Query: 1080 PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGNSALLD 1136
PLH A G + LL+ H A ++ G TPL + + +GD + +L + A +D
Sbjct: 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195
Score = 35.4 bits (81), Expect = 0.20
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 2 GRKDVVEYLLASGASIHARDD----GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN 57
G VE LL G DD G+ PLH A D+++LL+ A+P+ +
Sbjct: 79 GDVKAVEELLDLGKFA---DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK 135
Query: 58 FTPLHEAAAKG 68
F+PLH A G
Sbjct: 136 FSPLHLAVMMG 146
Score = 35.4 bits (81), Expect = 0.22
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ PLH A ++ ++LI GA+ + + +F+PLH A ++ LL+ A
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
Query: 274 TLHNC 278
+ +C
Sbjct: 162 DIEDC 166
Score = 34.2 bits (78), Expect = 0.50
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGD-QDVSDLL------- 1128
+P+ A ++ ++LL++HGA P K D + L D V EGD + V +LL
Sbjct: 36 ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95
Query: 1129 -----RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
G + L A L + KLL A + +PLHLA
Sbjct: 96 DVFYKDGMTPLHLATILKKL-DIMKLLIARGADPDIPNTDKFSPLHLA 142
Score = 33.0 bits (75), Expect = 1.1
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 21/117 (17%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRG--------- 1130
L +A G+ DI R LL G +P+ + DG +P+ L ++ D + LL
Sbjct: 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65
Query: 1131 ---NSALLDAAKKGNLGRVQKLLT----ADNINCRDAQGRNSTPLHLAAGEKRHLLM 1180
S L DA ++G++ V++LL AD++ +D TPLHLA K+ +M
Sbjct: 66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM----TPLHLATILKKLDIM 118
Score = 32.7 bits (74), Expect = 1.3
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 4 KDV--VEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
D+ +E L+ A + D G PL A + G + ++LL++ AN +
Sbjct: 146 GDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional.
Length = 823
Score = 49.9 bits (119), Expect = 8e-06
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL-DLVREGDQ 1122
+K + ++ D TPLH AA+KG D V +LL+H + ++ +G T L + +
Sbjct: 545 LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604
Query: 1123 DV----------SDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
+ SD L AAK+ +L +++LL N++ D QG +T L +A
Sbjct: 605 KIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG--ATALQVA 662
Query: 1172 AGEKRHLLMCRVTLGKSFLQFNAIKMAHA 1200
E H+ M R L N + A
Sbjct: 663 MAED-HVDMVR------LLIMNGADVDKA 684
Score = 47.6 bits (113), Expect = 4e-05
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 38/108 (35%)
Query: 542 AAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD------LWK---------FTPLHEAAA 586
+ G PLH A S G+ + +L+KH NV++ D LW F L+ A+
Sbjct: 556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS 615
Query: 587 -----------------------KALLQHGADINLKNTDGKTALDLAV 611
K LL+ G +++ ++ G TAL +A+
Sbjct: 616 ISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM 663
Score = 47.2 bits (112), Expect = 6e-05
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 40/221 (18%)
Query: 432 DGRHSTPLHFAA--GYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSA 489
D + TPLH AA GY +V LL H +VH +D G T L A ++
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLV--LLKHACNVHIRDAN----GNTALWNAISAKHHKIFR 608
Query: 490 LLPLSPSAANDPLRE---LFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLV 546
+L ++ +DP L A K DLT +K+L+ Q +N D+ + G
Sbjct: 609 IL-YHFASISDPHAAGDLLCTAAKRNDLTAMKELLK-QGLNV-DSEDHQ--------GAT 657
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLW-KFTP--LHEAAAKALLQHGADINLKNTDG 603
L A + H ++ +L+ +GA+V+ A+ F+P L E K L H
Sbjct: 658 ALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGH----------- 706
Query: 604 KTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWP 644
+ + + D ++ R+ G P
Sbjct: 707 ----SITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQCRP 743
Score = 42.2 bits (99), Expect = 0.002
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G ++E LL + D G PLH A S G+ D V +LL+ N + RD T L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSC-----YLAHGADPFL 116
A + + +Y +S S+ + G C K L G +
Sbjct: 596 WNAISAKHHKIFRILY--HFASISDPH---AAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650
Query: 117 KNQEGQTPLDLTVAED 132
++ +G T L + +AED
Sbjct: 651 EDHQGATALQVAMAED 666
Score = 40.2 bits (94), Expect = 0.009
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA-------LLQHGADINLKNTDG 603
S G+ + E L+K + ++ D TPLH AA+K LL+H ++++++ +G
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG 591
Query: 604 KTALDLAVPCTRAVLSGDHK 623
TAL A+ + HK
Sbjct: 592 NTAL------WNAISAKHHK 605
Score = 39.9 bits (93), Expect = 0.011
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 23/162 (14%)
Query: 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLL 806
AA L + LL+ G V+ D G TAL +D VR+L+ + AD +
Sbjct: 628 TAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687
Query: 807 VIFSCSTNLGLKHLLELFEREQ----ITLDILAEMNHEDLKQVGVSAYGY---------- 852
FS + L EL ++ + IT+ + DL + G S G
Sbjct: 688 DDFSPTE------LRELLQKRELGHSITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQC 741
Query: 853 --RHKLLKGIEKLCSSPSFSQPGTLLIDLLSDDKEFITVAEE 892
R + KG L + ++ G LI+L +E +A E
Sbjct: 742 RPRVSIYKGHPLLRNERCCNEAGK-LINLPPSLEELKAIAGE 782
Score = 37.5 bits (87), Expect = 0.049
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN-RDGATPLDLVR 1118
+K G NV+ D T L A A+ D+VRLL+ +GAD K N D +P +L
Sbjct: 642 LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE 697
Score = 36.4 bits (84), Expect = 0.10
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 722 AIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTAL 778
A++E L++ + + + P+H+AA G+ D + LL+ V++ D G TAL
Sbjct: 539 ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Score = 34.1 bits (78), Expect = 0.51
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
A G+ +L+ LL+ ++ D G+T LH A V VLL H + I
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI 586
Score = 32.5 bits (74), Expect = 1.6
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 31/107 (28%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMD------LWQ---------FTPLH---- 252
+ G PLH A S G+ + +L+K NV+ D LW F L+
Sbjct: 556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS 615
Query: 253 ------------EAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
AA ++ L LL +G + + +A+ VA
Sbjct: 616 ISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662
Score = 31.4 bits (71), Expect = 4.2
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 1049 KKKKNMYYGTLTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNR 1108
K+ ++ G L N + N+A + L A+ G A ++ LL+ DP +
Sbjct: 502 KELHDLNVGDLLGDNGGEHDDPNMA-----SNLLTVASTGNAALLEELLKAKLDPDIGDS 556
Query: 1109 DGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRNSTP 1167
G TPL + AA KG V LL A N++ RDA G +
Sbjct: 557 KGRTPLHI--------------------AASKGYEDCVLVLLKHACNVHIRDANGNTALW 596
Query: 1168 LHLAAGEKR 1176
++A +
Sbjct: 597 NAISAKHHK 605
Score = 31.0 bits (70), Expect = 4.6
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHS 280
A + L+K G NV++ D T L A ++ +++ LL+ GAD N
Sbjct: 629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD 688
Query: 281 KSAIDVAPTRELQQRLSNEFKGH 303
D +PT EL++ L GH
Sbjct: 689 ----DFSPT-ELRELLQKRELGH 706
Score = 31.0 bits (70), Expect = 4.8
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN---PNTRDNWNFTPL 61
++ LL G ++ + D G L A + H D+VRLL+ A+ NT D+++ T L
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695
Query: 62 HEAAAK 67
E K
Sbjct: 696 RELLQK 701
Score = 30.2 bits (68), Expect = 8.6
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCI 74
S G+A ++ LL+A +P+ D+ TPLH AA+KG D C+
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED-CV 574
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 49.4 bits (118), Expect = 9e-06
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAA-----KGKADIVRLLLQHGADPSKKNRDGATPL 1114
+ GANVN D TPL + K DIV++L+++GAD +KKN DG TPL
Sbjct: 58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113
Score = 42.5 bits (100), Expect = 0.001
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 558 EVTEMLVKHGANVNVADLWKFTPL---------HEAA---AKALLQHGADINLKNTDGKT 605
++ ++ + GANVN D TPL ++ K L+++GADIN KN+DG+T
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111
Query: 606 AL 607
L
Sbjct: 112 PL 113
Score = 38.7 bits (90), Expect = 0.017
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 707 TPLHCAVTSPYPKRKA---IVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
TPL C + S K IV+ LI GA +N+KN + P++ G+++ L+ LL +
Sbjct: 73 TPL-CTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFM 131
Query: 764 ---GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLV 807
GA L+D G T L V + +H+ D I+ LL+
Sbjct: 132 IENGADTTLLDKDGFTMLQ----------VYLQSNHHIDIEIIKLLL 168
Score = 37.1 bits (86), Expect = 0.065
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 517 VKKLVN-PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH-YEVTEMLVKHGANVNVAD 574
VK +N VN D STPL L N Y H ++ ++L+++GA++N +
Sbjct: 54 VKLFINLGANVNGLDN--EYSTPL-----CTILSNIKDYKHMLDIVKILIENGADINKKN 106
Query: 575 LWKFTP----LHEAAAKAL------LQHGADINLKNTDGKTALDLAV 611
TP L L +++GAD L + DG T L + +
Sbjct: 107 SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153
Score = 34.8 bits (80), Expect = 0.28
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 227 FEVTEMLIKAGANVNAMDLWQFTPLHEAAS-----KSRLEVCSLLLSEGAD 272
++ ++ I GANVN +D TPL S K L++ +L+ GAD
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD 101
Score = 32.1 bits (73), Expect = 2.2
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHA---DVVRLLLEADANPNTRDNW-NFT 59
+++ +++ +GA D G L H ++++LLLE + NT +N +
Sbjct: 125 LEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD 184
Query: 60 PLH 62
LH
Sbjct: 185 TLH 187
Score = 31.7 bits (72), Expect = 2.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 233 LIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNC 278
I + ++N +D F PL+ + S + ++ LL G D N
Sbjct: 244 FIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI---NI 286
Score = 31.3 bits (71), Expect = 3.7
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 218 LHNACSYGH-FEVTEMLIKAGANVNAMDLWQFTPLHEAASKS---RLEVCSLLLSEGADP 273
L N Y H ++ ++LI+ GA++N + TPL+ S LE+ ++ GAD
Sbjct: 79 LSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT 138
Query: 274 TL 275
TL
Sbjct: 139 TL 140
Score = 30.6 bits (69), Expect = 5.6
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 688 VKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKA-IVESLIRKGAHLNEKNK------ 739
+K L V +N + LHC + A I++ + G +N++NK
Sbjct: 164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF 223
Query: 740 -ELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
E L + ++LD + +N VD LG L+ + + + LL
Sbjct: 224 MEYLNSLLYDNKRFKKNILDFIFSY-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG 282
Query: 799 DTSIVSLL 806
D +I++ L
Sbjct: 283 DINIITEL 290
>gnl|CDD|188920 cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily. SAM (sterile
alpha motif) domain of ASZ1 (Ankyrin, SAM, leucine
Zipper) also known as GASZ (Germ cell-specific Ankyrin,
SAM, leucine Zipper) subfamily is a potential
protein-protein interaction domain. Proteins of this
group are involved in the repression of transposable
elements during spermatogenesis, oogenesis, and
preimplantation embryogenesis. They support synthesis of
PIWI-interacting RNA via association with some PIWI
proteins, such as MILI and MIWI. This association is
required for initiation and maintenance of
retrotransposon repression during the meiosis. In mice
lacking ASZ1, DNA damage and delayed germ cell
maturation was observed due to retrotransposons
releasing from their repressed state.
Length = 64
Score = 42.3 bits (100), Expect = 4e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L HL LF+ +T L +M EDL+++G++ G + K+L I+++
Sbjct: 15 LELGHLTPLFKEHDVTFSQLLKMTEEDLEKIGITQPGDQKKILDAIKEV 63
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33 amino
acids long and occur in at least four consecutive copies.
They are involved in protein-protein interactions. The
core of the repeat seems to be an helix-loop-helix
structure.
Length = 30
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADP 1103
TPLH AA G ++V+LLL GAD
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 38.3 bits (90), Expect = 5e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPN 51
G PLH A G+ +VV+LLL+ A+ N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 38.0 bits (89), Expect = 5e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNV 572
PLH A G+ EV ++L+ GA++N
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADINA 30
Score = 36.0 bits (84), Expect = 0.003
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNA 242
PLH A G+ EV ++L+ GA++NA
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADINA 30
Score = 35.6 bits (83), Expect = 0.004
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVH 462
TPLH AA + VV+ LL GAD++
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 33.3 bits (77), Expect = 0.031
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 248 FTPLHEAASKSRLEVCSLLLSEGADPTL 275
TPLH AA LEV LLL +GAD
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.2 bits (74), Expect = 0.061
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNL 769
P+HLAA+ G+L+V+ LL GA +N
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADINA 30
Score = 29.5 bits (67), Expect = 0.63
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 578 FTPLHEAA-------AKALLQHGADINL 598
TPLH AA K LL GADIN
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 27.9 bits (63), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNE 736
G TPLH A + +V+ L+ KGA +N
Sbjct: 2 GRTPLHLAAEN---GNLEVVKLLLDKGADINA 30
>gnl|CDD|188932 cd09533, SAM_Ste50-like_fungal, SAM domain of Ste50_like (ubc2)
subfamily. SAM (sterile alpha motif) domain of
Ste50-like (or Ubc2 for Ustilago bypass of cyclase)
subfamily is a putative protein-protein interaction
domain. This group includes only fungal proteins.
Basidiomycetes have an N-terminal SAM domain, central
UBQ domain, and C-terminal SH3 domain, while Ascomycetes
lack the SH3 domain. Ubc2 of Ustilago maydis is a major
virulence and maize pathogenicity factor. It is required
for filamentous growth (the budding haploid form of
Ustilago maydis is a saprophyte, while filamentous
dikaryotic form is a pathogen). Also the Ubc2 protein is
involved in the pheromone-responsive morphogenesis via
the MAP kinase cascade. The SAM domain is necessary for
ubc2 function; deletion of SAM eliminates this function.
A Lys-to-Glu mutation in the SAM domain of ubc2 gene
induces temperature sensitivity.
Length = 58
Score = 40.4 bits (95), Expect = 2e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGI 860
LGL + F IT D+L ++HEDLK++G+++ G+R +LK +
Sbjct: 9 LGLPQYEDQFIENGITGDVLVALDHEDLKEMGITSVGHRLTILKAV 54
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVH 462
TPLH AA + +V+ LL HGAD++
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
Score = 38.0 bits (89), Expect = 5e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNV 572
PLH A G+ E+ ++L++HGA++N
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADINA 30
Score = 38.0 bits (89), Expect = 6e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNA 242
PLH A G+ E+ ++L++ GA++NA
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADINA 30
Score = 37.6 bits (88), Expect = 9e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPNT 52
G PLH A G+ ++V+LLLE A+ N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 36.1 bits (84), Expect = 0.003
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADP 1103
TPLH AA G ++V+LLL+HGAD
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
Score = 31.8 bits (73), Expect = 0.098
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVN 768
P+HLAA G+L+++ LL GA +N
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADIN 29
Score = 31.5 bits (72), Expect = 0.13
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADP 273
TPLH AA LE+ LLL GAD
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
Score = 29.5 bits (67), Expect = 0.55
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 774 GQTALHRTARDDKTQAVRVLLSHNAD 799
G T LH AR+ + V++LL H AD
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGAD 27
Score = 28.8 bits (65), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
G+TPLH A + +V+ L+ GA +N
Sbjct: 2 GNTPLHLAARN---GNLELVKLLLEHGADIN 29
>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain.
Poly(ADP-ribose) polymerase catalyzes the covalent
attachment of ADP-ribose units from NAD+ to itself and
to a limited number of other DNA binding proteins, which
decreases their affinity for DNA. Poly(ADP-ribose)
polymerase is a regulatory component induced by DNA
damage. The carboxyl-terminal region is the most highly
conserved region of the protein. Experiments have shown
that a carboxyl 40 kDa fragment is still catalytically
active.
Length = 206
Score = 43.5 bits (103), Expect = 2e-04
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 873 GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVH 932
L L D +E+ + + + +T D G +F I+ I +VQ W+R+
Sbjct: 2 KCSLEPLDKDSEEYKIIEKYLLST----HDPTHGGPLF----ILEIFRVQREGEWDRF-- 51
Query: 933 RRAEVADENGGQAHERMLFHGSP--FINAIVQKGF 965
+ + R+L+HGS I+ +G
Sbjct: 52 ------QPHKKLRNRRLLWHGSRLTNFAGILSQGL 80
Score = 36.2 bits (84), Expect = 0.064
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 23/75 (30%)
Query: 1178 LLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGR--------------PS---------SG 1214
+L+ V LG A PPG HSV G P S
Sbjct: 122 MLLSEVALGDMNELTKADYAEKLPPGKHSVKGLGKTAPEDFVWLDGVPLGKPVATGYDSS 181
Query: 1215 GLYFPEYVVYRGEQV 1229
L + EYVVY QV
Sbjct: 182 VLLYNEYVVYNVNQV 196
Score = 30.0 bits (68), Expect = 6.6
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 53 RDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGG-GTGCP 99
R P+ GK GIYFA+ +SKS Y G+G
Sbjct: 81 RIAPPEAPVT-GYMFGK-----GIYFADDASKSANYCPTDEAHGSGLM 122
>gnl|CDD|188907 cd09508, SAM_HD, SAM domain of HD-phosphohydrolase. SAM (sterile
alpha motif) domain of SAM_HD subfamily proteins is a
putative protein-protein interaction domain. Proteins of
this group, additionally to the SAM domain, contain a HD
hydrolase domain. Human SAM-HD1 is a nuclear protein
involved in innate immune response and may act as a
negative regulator of the cell-intrinsic antiviral
response. Mutations in this gene lead to
Aicardi-Goutieres syndrome (symptoms include cerebral
atrophy, leukoencephalopathy, hepatosplenomegaly, and
increased production of alpha-interferon).
Length = 70
Score = 40.0 bits (94), Expect = 3e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866
G LLE+F +IT L ++ L+++GVS+ G R KLLK ++KL
Sbjct: 19 FGEPELLEIFRENEITGAHLPDLTESRLEKLGVSSLGERLKLLKCLQKLSQI 70
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 43.5 bits (102), Expect = 6e-04
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 7 VEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
VE LL G S + DD G +PLH A + +V +LL A+PN D + TPL+
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110
Score = 36.2 bits (83), Expect = 0.10
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 408 KGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNA 467
KG D V LL + N D DG + PLH A+ N +V LL HGAD NA
Sbjct: 48 KGLDERFVEELLHR-GYSPNETDDDGNY--PLHIASKINNNRIVAMLLTHGAD----PNA 100
Query: 468 TDKWGFTPLH 477
DK TPL+
Sbjct: 101 CDKQHKTPLY 110
Score = 35.8 bits (82), Expect = 0.13
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 1080 PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDV 1124
PLH A+ IV +LL HGADP+ ++ TPL + D +V
Sbjct: 75 PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEV 119
Score = 33.9 bits (77), Expect = 0.54
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAA---------KALLQHGA 594
G PLH A + + ML+ HGA+ N D TPL+ + L+Q+GA
Sbjct: 72 GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA 131
Query: 595 DIN 597
IN
Sbjct: 132 KIN 134
Score = 31.6 bits (71), Expect = 2.8
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTA- 782
VE L+ +G NE + + P+H+A+ + + ++ LL GA N D +T L+ +
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114
Query: 783 -RDDKTQAVRVLLSHNA 798
D+ + + +L+ + A
Sbjct: 115 TDDEVIERINLLVQYGA 131
Score = 30.8 bits (69), Expect = 4.7
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 218 LHNACSYGHFE--VTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
LH C + E L+ G + N D PLH A+ + + ++LL+ GADP
Sbjct: 41 LHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA 100
Query: 276 HNCHSKSAI 284
+ K+ +
Sbjct: 101 CDKQHKTPL 109
>gnl|CDD|188918 cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily. SAM (sterile
alpha motif) domain of ANKS3 subfamily is a potential
protein-protein interaction domain. Proteins of this
subfamily have N-terminal ankyrin repeats and a
C-terminal SAM domain. SAM is a widespread domain in
signaling proteins. In many cases it mediates
homo-dimerization/oligomerization.
Length = 64
Score = 39.0 bits (91), Expect = 7e-04
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865
+G L +FE + I L I + DLK++G++ +G + K+ I + S
Sbjct: 13 QIGCSKYLPIFEEQDIDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHS 64
>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily.
SAM (sterile alpha motif) domain of Ste11 subfamily is a
protein-protein interaction domain. Proteins of this
subfamily have SAM domain at the N-terminus and protein
kinase domain at the C-terminus. They participate in
regulation of mating pheromone response, invasive growth
and high osmolarity growth response. MAP triple kinase
Ste11 from S.cerevisia is known to interact with Ste20
kinase and Ste50 regulator. These kinases are able to
form homodimers interacting through their SAM domains as
well as heterodimers or heterogenous complexes when
either SAM domain of monomeric or homodimeric form of
Ste11 interacts with Ste50 regulator.
Length = 62
Score = 38.3 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L++FE+ IT D+L E++ E LK++G++ G R +LL+ I+ L
Sbjct: 13 LNCGQYLDIFEKNLITGDLLLELDKEALKELGITKVGDRIRLLRAIKSL 61
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 41.6 bits (98), Expect = 0.003
Identities = 67/279 (24%), Positives = 94/279 (33%), Gaps = 66/279 (23%)
Query: 374 GGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDG 433
G ++ E KKL P + S L A+ + +T LL + ++CR G
Sbjct: 28 GDLASVYRDLEEPKKLNINCPDRLG-RSALFVAAIENENLELTELLLN----LSCRGAVG 82
Query: 434 RHSTPLHFAAGYNRVAVVEYLLAHGADVHSK--------DNATDKW--GFTPLHEAAQKG 483
T LH A V VE +L H K D T ++ G T LH AA +
Sbjct: 83 D--TLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ 139
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
++ LL A+ P R G K + D+ +PL+ AA
Sbjct: 140 NYEIVKLLLE--RGASVPAR-----ACGDFFVKSQG---------VDSFYHGESPLNAAA 183
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH----EAAAKA----------- 588
L G + +L + A++ AD T LH E KA
Sbjct: 184 CL---------GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYN 234
Query: 589 -LLQHGADIN-------LKNTDGKTALDLAVPCTRAVLS 619
L + + N G T L LA R VL
Sbjct: 235 FALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF 273
Score = 41.6 bits (98), Expect = 0.003
Identities = 53/237 (22%), Positives = 78/237 (32%), Gaps = 59/237 (24%)
Query: 398 DLESQLLEASKGGDMTVVTR-LLSSCPHIVNCRDLDGRHSTPLHFAAGYNRV-AVVEYLL 455
D E L A++ GD+ V R L +NC D GR + L AA N + E LL
Sbjct: 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGR--SALFVAAIENENLELTELLL 73
Query: 456 AHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLT 515
D LH + + + EA L
Sbjct: 74 NLSCRGAVGDTL--------LHAISLE-------------------YVDAVEAILLHLLA 106
Query: 516 KVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVA-- 573
+K + N + T+ F G+ LH A +YE+ ++L++ GA+V
Sbjct: 107 AFRKSGPLELANDQYTS-------EFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159
Query: 574 ----------DLWKFTPLHEAAAKA---------LLQHGADINLKNTDGKTALDLAV 611
D + AA L + ADI ++ G T L L V
Sbjct: 160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216
Score = 39.7 bits (93), Expect = 0.012
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 6 VVEYLLASGASIHARDDG--------------GLHPLHNACSFGHADVVRLLLEADANPN 51
+V+ LL GAS+ AR G G PL+ A G +V LL E A+
Sbjct: 143 IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202
Query: 52 TRDNWNFTPLH 62
T D+ T LH
Sbjct: 203 TADSLGNTLLH 213
Score = 32.7 bits (75), Expect = 1.4
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 702 PYTGDTPLHCAV-TSPYPKRKAIVESLIRKGAHLN----------EKNKELL----APIH 746
G T LH A Y IV+ L+ +GA + + + +P++
Sbjct: 125 FTPGITALHLAAHRQNY----EIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLN 180
Query: 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
AA LG ++ L A + D LG T LH
Sbjct: 181 AAACLGSPSIVALLSEDPADILTADSLGNTLLH 213
Score = 31.6 bits (72), Expect = 3.4
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 29/132 (21%)
Query: 1064 VKHGANVNVADLWKF---------TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
N+ + +L T LH A + D V +L H + PL
Sbjct: 60 AIENENLELTELLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLH----LLAAFRKSGPL 114
Query: 1115 DLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLL--------TADNINCRDAQGRNS- 1165
+L DQ S+ G +AL AA + N V+ LL A +QG +S
Sbjct: 115 ELAN--DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF 172
Query: 1166 ----TPLHLAAG 1173
+PL+ AA
Sbjct: 173 YHGESPLNAAAC 184
Score = 30.4 bits (69), Expect = 8.0
Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 33/185 (17%)
Query: 284 IDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLT-SDVVNFKHP-YTGDTPLPGT 341
+ + LS+E K A +GD + V + L +N P G + L
Sbjct: 2 GPLDIVPAEESPLSDEEKAFLP--AAERGDLASVYRDLEEPKKLNINCPDRLGRSAL--- 56
Query: 342 LLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLES 401
+ + +++ E + + G T L + V+
Sbjct: 57 FVAAIENENLELTELLLNLSCRGAV--------GDTLLHAISLE----YVD---AVEAIL 101
Query: 402 QLLEASKGGDMTVVTRLLSSCPHIVNCRDLDG--RHSTPLHFAAGYNRVAVVEYLLAHGA 459
L A+ + N + T LH AA +V+ LL GA
Sbjct: 102 LHLLAAFRKSGP---------LELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA 152
Query: 460 DVHSK 464
V ++
Sbjct: 153 SVPAR 157
Score = 30.0 bits (68), Expect = 9.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 1080 PLHEAAAKGKADIVRLLLQHGADPS 1104
PL+ AA G IV LL + AD
Sbjct: 178 PLNAAACLGSPSIVALLSEDPADIL 202
>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the
transfer of ADP_ribose from NAD+ to substrates.
Bacterial toxins are cytoplasmic and catalyze the
transfer of a single ADP_ribose unit to eukaryotic
elongation factor 2, halting protein synthesis and
killing the cell. Poly(ADP-ribose) polymerases (PARPS
1-3, VPARP, tankyrase) catalyze the addition of up to
100 ADP_ribose units from NAD+. PARPs 1 and 2 are
localized in the nucleaus, bind DNA, and are activated
by DNA damage. VPARP is part of the vault
ribonucleoprotein complex. Tankyrases regulates telomere
length in part through poy(ADP_ribosylation) of telomere
repeat binding factor 1 (TRF1). Poly(ADP-ribose)
polymerase catalyses the covalent attachment of
ADP-ribose units from NAD+ to itself and to a limited
number of other DNA binding proteins, which decreases
their affinity for DNA. Poly(ADP-ribose) polymerase is a
regulatory component induced by DNA damage. The
carboxyl-terminal region is the most highly conserved
region of the protein. Experiments have shown that a
carboxyl 40 kDa fragment is still catalytically active.
Length = 137
Score = 37.2 bits (86), Expect = 0.012
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSC 106
GIY A + SKSN Y G G K + C
Sbjct: 36 GIYSAPNISKSNGYSVGCDGQHVFQNGKPKVC 67
Score = 32.1 bits (73), Expect = 0.67
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 992 MLFHGSPFINAIVQKGFDERHAYIG-----GMFGAG 1022
LFHGSP N I R A G GMFG G
Sbjct: 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKG 36
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 38.8 bits (90), Expect = 0.014
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 538 PLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNV-ADLWKFTPLHEAA-------AKAL 589
PL + PL A + + ++L+++GA+VN A+ K TPL+ + + L
Sbjct: 64 PLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEIL 123
Query: 590 LQHGADINLKNTDGKTALDLA 610
L +GADIN++ D T ++LA
Sbjct: 124 LSYGADINIQTNDMVTPIELA 144
Score = 33.4 bits (76), Expect = 0.68
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 548 LHNACSYGHYEVTEMLVKHGANVNV----ADLWKFTPL-------HEAAAKALLQHGADI 596
L+++ + + ++ + ++K GA+ ++ K PL ++ AAK L+++GAD+
Sbjct: 37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96
Query: 597 N 597
N
Sbjct: 97 N 97
Score = 33.0 bits (75), Expect = 0.76
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1064 VKHGANVNV-ADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+++GA+VN A+ K TPL+ + G + +LL +GAD + + D TP++L
Sbjct: 90 IRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIEL 143
Score = 31.5 bits (71), Expect = 2.5
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 690 KFLTSDVVNF----------KHPYTGD---TPLHCAVTSPYPKRKAIVESLIRKGAHLNE 736
KF +D+++ P + + PL A+ A LIR GA +N
Sbjct: 42 KFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAID--CDNDDAAK-LLIRYGADVNR 98
Query: 737 KNKEL-LAPIHLAADLGHLDVLDTLLRLGAKVNLV 770
+E + P++++ G L L+ LL GA +N+
Sbjct: 99 YAEEAKITPLYISVLHGCLKCLEILLSYGADINIQ 133
>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CNK1,2,3-suppressor
subfamily. SAM (sterile alpha motif) domain of CNK
(connector enhancer of kinase suppressor of ras (Ksr))
subfamily is a protein-protein interaction domain. CNK
proteins are multidomain scaffold proteins containing a
few protein-protein interaction domains and are required
for connecting Rho and Ras signaling pathways. In
Drosophila, the SAM domain of CNK is known to interact
with the SAM domain of the aveugle protein, forming a
heterodimer. Mutation of the SAM domain in human CNK1
abolishes the ability to cooperate with the Ras
effector, supporting the idea that this interaction is
necessary for proper Ras signal transduction.
Length = 69
Score = 34.6 bits (80), Expect = 0.026
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 824 FEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864
FERE++T + L ++ +DL+ +GV+ G++ +L+ +E LC
Sbjct: 27 FEREKVTGEQLLNLSPQDLENLGVTKIGHQELILEAVELLC 67
>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins. SAM (sterile
alpha motif) domain of WDSUB1 subfamily proteins is a
putative protein-protein interaction domain. Proteins of
this group contain multiple domains: SAM, one or more
WD40 repeats and U-box (derived version of the
RING-finger domain). Apparently the WDSUB1 subfamily
proteins participate in protein degradation through
ubiquitination, since U-box domain are known as a member
of E3 ubiquitin ligase family, while SAM and WD40
domains most probably are responsible for an E2
ubiquitin-conjugating enzyme binding and a target
protein binding.
Length = 72
Score = 34.6 bits (80), Expect = 0.027
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 813 TNLGLKHLLELFEREQITLDILAEMNHEDL-KQVGVSAYGYRHKLLKGIEKL 863
++GL+ +E+F I L + E L K + + + G+R+K+L+ IE+L
Sbjct: 15 RSIGLEQYVEVFRANNIDGKELLNLTKESLSKDLKIESLGHRNKILRKIEEL 66
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 37.1 bits (86), Expect = 0.030
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%)
Query: 660 ELMFMPRIKDEFKGHC--LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPY 717
E + F +C L + D VKK+ VN + +TP+ +
Sbjct: 7 EYDYNDFTDYLFYRYCNPLFYYVEKDDIEGVKKW--IKFVNDCNDLY-ETPIFSCLEKDK 63
Query: 718 PKRKAIVESLIRKGAHLNEKNK-ELLAPIHLAADLG---HLDVLDTLLRLGAKVNLVDVL 773
I++ LI GA +N K + L+ +H ++L L+ G+ + D
Sbjct: 64 VN-VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED 122
Query: 774 GQTALHR 780
G+ LH
Sbjct: 123 GKNLLHM 129
Score = 35.6 bits (82), Expect = 0.10
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 28/117 (23%)
Query: 505 LFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNAC---SYGHYEVTE 561
LF + D+ VKK + VN D TP+ +C + E+ +
Sbjct: 25 LFYYVEKDDIEGVKKWIK--FVN--DCNDLYETPIF----------SCLEKDKVNVEILK 70
Query: 562 MLVKHGANVN-VADLWKFTPLH----------EAAAKALLQHGADINLKNTDGKTAL 607
L+++GA+VN + LH K L+ G+ I ++ DGK L
Sbjct: 71 FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLL 127
Score = 32.5 bits (74), Expect = 1.0
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHN-ACSFG-HADVVRLLLEADANPNTRDNWNFTPLH 62
++++ L+ SG+SI D+ G + LH C+F +V++LL+++ + +D N L+
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163
Score = 31.3 bits (71), Expect = 2.5
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 1064 VKHGANVN-VADLWKFTPLHEAAAKGK---ADIVRLLLQHGADPSKKNRDGATPL 1114
+++GA+VN + LH + K +I+++L+ G+ ++++ DG L
Sbjct: 73 IENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLL 127
Score = 30.2 bits (68), Expect = 5.9
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 214 GLVPLHNACSYG---HFEVTEMLIKAGANVNAMDLWQFTPLHEAASK--SRLEVCSLLLS 268
L LH+ S+ E+ ++LI +G+++ D LH R+ V LL+
Sbjct: 87 NLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID 146
Query: 269 EGADP 273
G
Sbjct: 147 SGVSF 151
Score = 29.8 bits (67), Expect = 6.2
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 690 KFLTSDV--VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHL 747
KFL + VNFK + LH ++ I++ LI G+ + E++++ +H+
Sbjct: 70 KFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM 129
Query: 748 AAD--LGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
++V+ L+ G D L+
Sbjct: 130 YMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163
>gnl|CDD|188915 cd09516, SAM_sec23ip-like, SAM domain of sec23ip-like subfamily.
SAM (sterile alpha motif) domain of Sec23ip-like (Sec23
interacting protein) subfamily is a potential
protein-protein interaction domain. This group of
proteins includes Sec23ip and DDHD2 proteins. All of
them contain at least two domains: a SAM domain and a
predicted metal-binding domain. For mammalian DDHD2
members of this group, phospholipase activity has been
demonstrated. Sec23ip proteins of this group interact
with Sec23 proteins via an N-terminal proline-rich
region. Members of this subfamily are involved in
organization of ER/Golgi intermediate compartment.
Length = 69
Score = 33.9 bits (78), Expect = 0.041
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLL 857
LGL + FE+E+I ++ L + DLK++G+ G R KLL
Sbjct: 19 LGLSEYFDTFEKEKIDMESLLLCSESDLKEMGI-PMGPRKKLL 60
>gnl|CDD|188916 cd09517, SAM_USH1G_HARP, SAM domain of USH1G_HARP family. SAM
(sterile alpha motif) domain of USH1G/HARP (Usher
syndrome type-1G/ Harmonin-interacting Ankyrin
Repeat-containing protein) family is a protein-protein
interaction domain. Members of this family have an
N-terminal ankyrin repeat region and a C-terminal SAM
domain. In mammals these proteins can interact via the
SAM domain with the PDZ domain of harmonin to form a
scaffolding complex that facilitates signal transduction
in epithelial and inner ear sensory cells. It was
suggested that USH1G and HARP can be tissue specific
partners of harmonin. Mutations in ush1g genes lead to
Usher syndrome type 1G. This syndrome is the cause of
deaf-blindness in humans.
Length = 66
Score = 33.8 bits (78), Expect = 0.047
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 813 TNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEK 862
T+ L+ L +FERE+I L+ L + EDL+ + + G R KLL I K
Sbjct: 10 TSNHLEEYLPVFEREKIDLEALMLLTDEDLQSLKLP-LGPRRKLLNAIAK 58
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 37.6 bits (87), Expect = 0.047
Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 58/245 (23%)
Query: 558 EVTEMLVKHGANVNVADLWKFTPLHE---------AAAKALLQHGADINLKNTDGKTALD 608
++ E L +G NVN+ + TPLH + K +++ G D+++K +G +
Sbjct: 193 DILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMS--- 249
Query: 609 LAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIK 668
P +++ D+ E+ Y L + +P I
Sbjct: 250 ---PIMTYIINIDNINPEITNI----------YIESLDGNKV-----------KNIPMIL 285
Query: 669 DEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLI 728
H + R D S V FL V G T LH + I++ L
Sbjct: 286 -----HSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS-TDIIKLLH 339
Query: 729 RKGAHLNEKNK----------ELLAPIHLA-----ADLGHLDVLDTLLRLGAKVNLVDVL 773
G LNE + +L+ +++ D+ LDV+ L+ LGA + V+ L
Sbjct: 340 EYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDI-RLDVIQCLISLGADITAVNCL 398
Query: 774 GQTAL 778
G T L
Sbjct: 399 GYTPL 403
Score = 36.8 bits (85), Expect = 0.078
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL-- 754
+N+ TG LH + + Y I+E L G ++N +N L+ P+H G++
Sbjct: 169 LNYVCKKTGYGILHAYLGNMYVDID-ILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA 227
Query: 755 DVLDTLLRLGAKVNLVDVLGQTAL 778
V+ ++ LG +++ V G + +
Sbjct: 228 SVIKKIIELGGDMDMKCVNGMSPI 251
Score = 33.7 bits (77), Expect = 0.65
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNAC--SFGHADVVRLLLEADANPNTRDNWNFTPLH 62
VV L G +H +D G LH D+++LL E + N DN T LH
Sbjct: 298 SVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH 357
Query: 63 EAAAKGKTDVCI-GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEG 121
+ + + I E + V C ++ GAD N G
Sbjct: 358 TYLSM----LSVVNILDPETDNDIRLDVI--------------QCLISLGADITAVNCLG 399
Query: 122 QTPL 125
TPL
Sbjct: 400 YTPL 403
>gnl|CDD|188986 cd09587, SAM_HARP, SAM domain of HARP subfamily. SAM (sterile
alpha motif) domain of HARP (Harmonin-interacting
Ankyrin Repeat-containing) proteins, also known as
ANKS4B, is a protein-protein interaction domain.
Proteins of this subfamily have an N-terminal ankyrin
repeat region and C-terminal SAM. In mouse epithelial
tissues, HARP protein interacts with the PDZ domain of
harmonin. This scaffolding complex facilitates signal
transduction in epithelia. HARP was found co-expressed
with harmonin in a number of epithelial cells including
pancreatic ductal epithelium, embryonic epithelia of the
lung, kidney, salivary glands, and cochlea.
Length = 67
Score = 33.6 bits (77), Expect = 0.057
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 817 LKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQPG 873
L+ L +F REQI L+ L + EDL+ + + G R K+L + + QPG
Sbjct: 14 LEEFLPIFMREQIDLEALMLCSDEDLQNIQMQ-LGPRKKILSAVAR--RKQVLQQPG 67
>gnl|CDD|188955 cd09556, SAM_VTS1_fungal, SAM domain of VTS1 RNA-binding proteins.
SAM (sterile alpha motif) domain of VTS1 subfamily
proteins is RNA binding domain located in the C-terminal
region. SAM interacts with stem-loop structures of mRNA.
Proteins of this subfamily participate in regulation of
transcript stability and degradation, and also may be
involved in vacuolar protein transport regulation. VTS1
protein of S.cerevisiae induces mRNA degradation via the
major deadenylation-dependent mRNA decay pathway; VTS1
recruits CCR4/POP2/NOT deadenylase complex to target
mRNA. The recruitment is the initial step resulting in
poly(A) tail removal transcripts. Potentially SAM domain
may be responsible not only for RNA binding but also for
deadenylase binding.
Length = 69
Score = 33.4 bits (77), Expect = 0.058
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 834 LAEMNHEDLKQVGVSAYGYRHKLLK 858
L E++ EDL+ GVSA G R KLLK
Sbjct: 33 LIELDDEDLEDKGVSALGARRKLLK 57
>gnl|CDD|188887 cd09488, SAM_EPH-R, SAM domain of EPH family of tyrosine kinase
receptors. SAM (sterile alpha motif) domain of EPH
(erythropoietin-producing hepatocyte) family of receptor
tyrosine kinases is a C-terminal signal transduction
module located in the cytoplasmic region of these
receptors. SAM appears to mediate cell-cell initiated
signal transduction via binding proteins to a conserved
tyrosine that is phosphorylated. In some cases the SAM
domain mediates homodimerization/oligomerization and
plays a role in the clustering process necessary for
signaling. EPH kinases are the largest family of
receptor tyrosine kinases. They are classified into two
groups based on their abilities to bind ephrin-A and
ephrin-B ligands. The EPH receptors are involved in
regulation of cell movement, shape, and attachment
during embryonic development; they control cell-cell
interactions in the vascular, nervous, epithelial, and
immune systems, and in many tumors. They are potential
molecular markers for cancer diagnostics and potential
targets for cancer therapy.
Length = 61
Score = 33.0 bits (76), Expect = 0.067
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+LD +A+M EDL ++GV+ G++ K+L I+ L
Sbjct: 28 SLDAVAQMTAEDLTRLGVTLVGHQKKILNSIQAL 61
>gnl|CDD|188917 cd09518, SAM_ANKS6, SAM domain of ANKS6 (or SamCystin) subfamily.
SAM (sterile alpha motif) domain of ANKS6 (or SamCystin)
subfamily is a potential protein-protein interaction
domain. Proteins of this subfamily have N-terminal
ankyrin repeats and a C-terminal SAM domain. They are
able to form self-associated complexes and both (SAM and
ANK) domains play a role in such interactions.
Mutations in Anks6 gene are associated with polycystic
kidney disease. They cause formation of renal cysts in
rodent models. It was suggested that the ANKS6 protein
can interact indirectly (through RNA and protein
intermediates) with BICC1, another polycystic kidney
disease-associated protein.
Length = 65
Score = 33.3 bits (76), Expect = 0.074
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L+ +FE +++ ++ + DLK++G+ G R ++L I +L
Sbjct: 15 LSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGPRQQILAAISEL 63
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 36.9 bits (85), Expect = 0.078
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 411 DMTVVTRLLSSC----PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN 466
DM+ +LS+ P++ + +D R T LH A YN+ ++V LL G+DV+ + N
Sbjct: 424 DMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSN 483
Query: 467 ATDKWGFTPLHEAAQKGRT--QLSALLPLSPS--AANDPLREL 505
G+T + A + R L LL P+ D LRE+
Sbjct: 484 N----GYTCIAIAINESRNIELLKMLLCHKPTLDCVIDSLREI 522
Score = 32.7 bits (74), Expect = 1.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 767 VNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+N++D G+T LH+ R +K V +LL +D +I S
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRS 482
>gnl|CDD|188984 cd09585, SAM_DDHD2, SAM domain of DDHD2. SAM (sterile alpha motif)
domain of DDHD2 group is a potential protein-protein
interaction domain. DDHD2 proteins contain at least two
domains:a SAM domain and a predicted metal-binding
domain. Phospholipase A1 activity was demonstrated for
the mammalian DDHD2 protein. Mutation of the putative
catalytic serine resulted in elimination of activity.
Unlike SEC23IP, DDHD2 proteins do not have an N-terminal
proline-rich region and correspondingly they are not
able to interact with Sec23p/Sec24p complex.
Overexpression of DDHD2 is the cause of dispersion of
ER/Golgi intermediate compartment and dispersion of
tethering proteins located in the Golgi region, leading
to aggregation in the endoplasmic reticulum.
Length = 69
Score = 32.8 bits (75), Expect = 0.12
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGI 860
LGL ++FE+E+I L+ LA DLK +G+ G R K+L I
Sbjct: 19 LGLSEYCDVFEKEKIDLEALALCQERDLKDLGI-PLGPRKKILNYI 63
>gnl|CDD|188889 cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (angiotensin
receptor-associated protein). SAM (sterile alpha motif)
domain of Arap1,2,3 subfamily proteins (angiotensin
receptor-associated) is a protein-protein interaction
domain. Arap1,2,3 proteins are
phosphatidylinositol-3,4,5-trisphosphate-dependent
GTPase-activating proteins. They are involved in
phosphatidylinositol-3 kinase (PI3K) signaling pathways.
In addition to SAM domain, Arap1,2,3 proteins contain
ArfGap, PH-like, RhoGAP and UBQ domains. SAM domain of
Arap3 protein was shown to interact with SAM domain of
Ship2 phosphatidylinositol-trisphosphate phosphatase
proteins. Such interaction apparently plays a role in
inhibition of PI3K regulated pathways since Ship2
converts PI(3,4,5)P3 into PI(3,4)P2. Proteins of this
subfamily participate in regulation of signaling and
trafficking associated with a number of different
receptors (including EGFR, TRAIL-R1/DR4, TRAIL-R2/DR5)
in normal and cancer cells; they are involved in
regulation of actin cytoskeleton remodeling, cell
spreading and formation of lamellipodia.
Length = 63
Score = 32.3 bits (74), Expect = 0.16
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 798 ADTSIVSLLVIFSCSTNLGLKHLLELFEREQ-ITLDILAEMNHEDLKQVGVSAYGYRHKL 856
AD I L ++ L+ L+LF +T +N LKQ+G+S G+R ++
Sbjct: 2 ADLDIAEWL------ASIHLEQYLDLFREHGYVTATDCQGINDSRLKQIGISPTGHRRRI 55
Query: 857 LKGIE 861
LK +
Sbjct: 56 LKQLP 60
>gnl|CDD|188954 cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B6 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-B6 receptors and appears to mediate cell-cell
initiated signal transduction. Receptors of this type
are highly expressed in embryo and adult nervous system,
in thymus and also in T-cells. They are involved in
regulation of cell adhesion and migration. (EPH-B6
receptor is unusual; it fails to show catalytic activity
due to alteration in kinase domain). EPH-B6 may be
considered as a biomarker in some types of tumors;
EPH-B6 activates MAP kinase signaling in lung
adenocarcinoma, suppresses metastasis formation in
non-small cell lung cancer, and slows invasiveness in
some breast cancer cell lines.
Length = 69
Score = 32.2 bits (73), Expect = 0.17
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 829 ITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
T +A+++ EDL +G++ G++ KLL I+ L
Sbjct: 31 CTFSDVAQLSLEDLPALGITLAGHQKKLLHHIQLL 65
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 35.7 bits (82), Expect = 0.17
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 415 VTRLLSSC-PHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGF 473
V +L C P+I + +D + L++ + V++VE+L+ +GAD+ N T K+G
Sbjct: 389 VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI----NITTKYGS 444
Query: 474 T 474
T
Sbjct: 445 T 445
>gnl|CDD|188952 cd09553, SAM_EPH-B3, SAM domain of EPH-B3 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B3 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-B3 receptors and appears to mediate cell-cell
initiated signal transduction. EPH-B3 receptor protein
kinase performs kinase-dependent and kinase-independent
functions. It is known to be involved in thymus
morphogenesis, in regulation of cell adhesion and
migration. Also EphB3 controls cell positioning and
ordered migration in the intestinal epithelium and plays
a role in the regulation of adult retinal ganglion cell
axon plasticity after optic nerve injury. In some
experimental models overexpression of EphB3 enhances
cell/cell contacts and suppresses colon tumor growth.
Length = 69
Score = 31.9 bits (72), Expect = 0.21
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ D++A+M EDL ++GV+ G++ K+L I+ +
Sbjct: 32 SFDLVAQMTAEDLLRIGVTLAGHQKKILSSIQDM 65
>gnl|CDD|188888 cd09489, SAM_Smaug-like, SAM (Sterile alpha motif ). SAM (sterile
alpha motif) domain of Smaug-like subfamily proteins is
an RNA binding domain. SAM interacts with stem-loop
structures in target mRNAs. Proteins of this subfamily
are post-transcriptional regulators involved in mRNA
silencing and deadenylation; they can be implicated in
transcript stability regulation and vacuolar protein
transport as well. SAM_Smaug-like domain-containing
proteins are found in metazoa from yeast to human. In
animals they are active during early embryogenesis.
Length = 57
Score = 31.4 bits (71), Expect = 0.24
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L + F+ T + L + E L++ GV G R KLLK +
Sbjct: 9 LRLHKYSDAFK--GTTWEELLYLTEETLEKKGVLTLGARRKLLKAFGIV 55
>gnl|CDD|188945 cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A5 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A5 receptors and appears to mediate cell-cell
initiated signal transduction. Eph-A5 gene is almost
exclusively expressed in the nervous system. Murine
EPH-A5 receptors participate in axon guidance during
embryogenesis and play a role in the adult synaptic
plasticity, particularly in neuron-target interactions
in multiple neural circuits. Additionally EPH-A5
receptors and its ligand ephrin A5 regulate dopaminergic
axon outgrowth and influence the formation of the
midbrain dopaminergic pathways. EphA5 gene expression
was found decreased in a few different breast cancer
cell lines, thus it might be a potential molecular
marker for breast cancer carcinogenesis and progression.
Length = 66
Score = 31.8 bits (72), Expect = 0.25
Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 822 ELF-EREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
E+F E ++D +A++ EDL+++GV+ G++ K++ I+++
Sbjct: 20 EIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNSIQEM 62
>gnl|CDD|241088 cd12644, RRM_CFIm59, RNA recognition motif of pre-mRNA cleavage
factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar
proteins. This subgroup corresponds to the RRM of
CFIm59. Cleavage factor Im (CFIm) is a highly conserved
component of the eukaryotic mRNA 3' processing machinery
that functions in UGUA-mediated poly(A) site
recognition, the regulation of alternative poly(A) site
selection, mRNA export, and mRNA splicing. It is a
complex composed of a small 25 kDa (CFIm25) subunit and
a larger 59/68/72 kDa subunit. The two separate genes,
CPSF6 and CPSF7, code for two isoforms of the large
subunit, CFIm68 and CFIm59. The family includes CFIm59,
also termed cleavage and polyadenylation specificity
factor subunit 6 (CPSF7), or cleavage and
polyadenylation specificity factor 59 kDa subunit
(CPSF59). CFIm59 contains an N-terminal RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), a central proline-rich
region, and a C-terminal RS-like domain. The N-terminal
RRM of CFIm59 mediates the interaction with CFIm25. It
also serves to enhance RNA binding and facilitate RNA
looping. .
Length = 90
Score = 32.2 bits (73), Expect = 0.31
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 350 DKEFITVAEEM------QATVREHRDNGQSGGYTALQVAGENSKKLLQE 392
D++ I V + + E+R NGQS GY + VA ENS L E
Sbjct: 15 DQQLIQVIRSVGVKDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 63
>gnl|CDD|188944 cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A4 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A4 receptors and appears to mediate cell-cell
initiated signal transduction. SAM domains of EPH-A4
receptors can form homodimers. EPH-A4 receptors bind
ligands such as erphirin A1, A4, A5. They are known to
interact with a number of different proteins, including
meltrin beta metalloprotease, Cdk5, and EFS2alpha,
however SAM domain doesn't participate in these
interactions. EPH-A4 receptors are involved in
regulation of corticospinal tract formation, in pathway
controlling voluntary movements, in formation of motor
neurons, and in axon guidance (SAM domain is not
required for axon guidance or for EPH-A4 kinase
signaling). In Xenopus embryos EPH-A4 induces loss of
cell adhesion, ventro-lateral protrusions, and severely
expanded posterior structures. Mutations in SAM domain
conserved tyrosine (Y928F) enhance the ability of EPH-A4
to induce these phenotypes, thus supporting the idea
that the SAM domain may negatively regulate some aspects
of EPH-A4 activity. EphA4 gene was found overexpressed
in a number of different cancers including human gastric
cancer, colorectal cancer, and pancreatic ductal
adenocarcinoma. It is likely to be a promising molecular
target for the cancer therapy.
Length = 71
Score = 31.5 bits (71), Expect = 0.32
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865
TL+ + MN +DL ++G+SA +++K+L ++ + S
Sbjct: 29 TLEAVVHMNQDDLARIGISAIAHQNKILSSVQGMRS 64
>gnl|CDD|241087 cd12643, RRM_CFIm68, RNA recognition motif of pre-mRNA cleavage
factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar
proteins. This subgroup corresponds to the RRM of
CFIm68. Cleavage factor Im (CFIm) is a highly conserved
component of the eukaryotic mRNA 3' processing machinery
that functions in UGUA-mediated poly(A) site
recognition, the regulation of alternative poly(A) site
selection, mRNA export, and mRNA splicing. It is a
complex composed of a small 25 kDa (CFIm25) subunit and
a larger 59/68/72 kDa subunit. Two separate genes, CPSF6
and CPSF7, code for two isoforms of the large subunit,
CFIm68 and CFIm59. The family includes CFIm68, also
termed cleavage and polyadenylation specificity factor
subunit 6 (CPSF6), or cleavage and polyadenylation
specificity factor 68 kDa subunit (CPSF68), or protein
HPBRII-4/7. CFIm68 contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), a central
proline-rich region, and a C-terminal RS-like domain.
The N-terminal RRM of CFIm68 mediates the interaction
with CFIm25. It also serves to enhance RNA binding and
facilitate RNA looping. .
Length = 77
Score = 31.2 bits (71), Expect = 0.40
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 366 EHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQ 402
E+R NGQS G+ + + E+S + L + +L Q
Sbjct: 35 ENRANGQSKGFALIVLGSESSSRKLMDKLPKKELHGQ 71
>gnl|CDD|188950 cd09551, SAM_EPH-B1, SAM domain of EPH-B1 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B1 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of EPH-
B1 receptors. In human vascular endothelial cells it
appears to mediate cell-cell initiated signal
transduction via the binding of the adaptor protein
GRB10 (growth factor) through its SH2 domain to a
conserved tyrosine that is phosphorylated. EPH-B1
receptors play a role in neurogenesis, in particular in
regulation of proliferation and migration of neural
progenitors in the hippocampus and in corneal
neovascularization; they are involved in converting the
crossed retinal projection to ipsilateral retinal
projection. They may be potential targets in
angiogenesis-related disorders.
Length = 68
Score = 31.2 bits (70), Expect = 0.41
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+L ++A+M EDL ++GV+ G++ K+L I+ +
Sbjct: 32 SLQLVAQMTSEDLLRIGVTLAGHQKKILNSIQSM 65
>gnl|CDD|188946 cd09547, SAM_EPH-A6, SAM domain of EPH-A6 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A6 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A6 receptors and appears to mediate cell-cell
initiated signal transduction. Eph-A6 gene is
preferentially expressed in the nervous system. EPH-A6
receptors are involved in primate retina vascular and
axon guidance, and in neural circuits responsible for
learning and memory. EphA6 gene was significantly down
regulated in colorectal cancer and in malignant
melanomas. It is a potential molecular marker for these
cancers.
Length = 64
Score = 31.0 bits (70), Expect = 0.43
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
TLD+++ M +D++++GV+ G++ +++ I+ L
Sbjct: 29 TLDMVSRMTIDDIRRIGVTLIGHQRRIVSSIQTL 62
>gnl|CDD|188951 cd09552, SAM_EPH-B2, SAM domain of EPH-B2 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-B2 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-B2 receptors and appears to mediate cell-cell
initiated signal transduction. SAM domains of this
subfamily form homodimers/oligomers (in
head-to-head/tail-to-tail orientation); apparently such
clustering is necessary for signaling. EPH-B2 receptor
is involved in regulation of synaptic function; it is
needed for normal vestibular function, proper formation
of anterior commissure, control of cell positioning, and
ordered migration in the intestinal epithelium. EPH-B2
plays a tumor suppressor role in colorectal cancer. It
was found to be downregulated in gastric cancer and
thus may be a negative biomarker for it.
Length = 71
Score = 31.1 bits (70), Expect = 0.46
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIE 861
+ D++++M ED+ +VGV+ G++ K+L I+
Sbjct: 32 SFDVVSQMTMEDILRVGVTLAGHQKKILNSIQ 63
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 34.2 bits (78), Expect = 0.47
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHAD--VVRLLLE 45
KDV++ L+ + SIH RD+GG P+ S D +V+LL++
Sbjct: 215 KDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258
>gnl|CDD|238719 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose) polymerases
catalyse the covalent attachment of ADP-ribose units from
NAD+ to itself and to a limited number of other DNA
binding proteins, which decreases their affinity for DNA.
Poly(ADP-ribose) polymerase is a regulatory component
induced by DNA damage. The carboxyl-terminal region is
the most highly conserved region of the protein.
2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes
pleotropic effects in mammalian species through
modulating gene expression. TCCD indicible PARP (TiPARP)
is a target of TCDD that may contribute to multiple
responses to TCDD by modulating protein function through
poly ADP-ribosylation.
Length = 121
Score = 31.9 bits (73), Expect = 0.58
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 992 MLFHG--SPFINAIVQKGFDER-HAYIGGMFGAG 1022
+LFHG + + AI + GFD R G M+G G
Sbjct: 1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKG 34
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 32.5 bits (74), Expect = 0.66
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 415 VTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNR---VAVVEYLLAHGADVHSKDNATDKW 471
V +S H+++ D GR T H A Y+R V +E L+ GAD+++++ T
Sbjct: 39 VAPFISGDGHLLHRYDHHGRQCT--HMVAWYDRANAVMKIELLVNMGADINARELGT--- 93
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSA 497
G T LH AA +L+ L
Sbjct: 94 GNTLLHIAASTKNYELAEWLCRQLGV 119
>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid
dehydrogenase) and HSD3B1(delta 5-delta
4-isomerase)-like, extended (e) SDRs. This extended-SDR
subgroup includes human 3 beta-HSD/HSD3B1 and C(27)
3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid
oxidoreductase; HSD3B7], and related proteins. These
proteins have the characteristic active site tetrad and
NAD(P)-binding motif of extended SDRs. 3 beta-HSD
catalyzes the oxidative conversion of delta 5-3
beta-hydroxysteroids to the delta 4-3-keto
configuration; this activity is essential for the
biosynthesis of all classes of hormonal steroids. C(27)
3beta-HSD is a membrane-bound enzyme of the endoplasmic
reticulum, it catalyzes the isomerization and oxidation
of 7alpha-hydroxylated sterol intermediates, an early
step in bile acid biosynthesis. Mutations in the human
gene encoding C(27) 3beta-HSD underlie a rare autosomal
recessive form of neonatal cholestasis. Extended SDRs
are distinct from classical SDRs. In addition to the
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet) core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids. Extended SDRs are a
diverse collection of proteins, and include isomerases,
epimerases, oxidoreductases, and lyases; they typically
have a TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid sythase have
a GGXGXXG NAD(P)-binding motif and an altered active
site motif (YXXXN). Fungal type ketoacyl reductases have
a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 354
Score = 33.2 bits (76), Expect = 0.81
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 676 LLEACRQGDPSRVKKFL-TSDV----VNFK-HP-YTG--DTPLHCAVTSPYPKRKAIVES 726
+LEAC Q + VK+ + TS + NFK P + G DTP T PY K + E+
Sbjct: 105 VLEACVQ---NNVKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAEN 161
Query: 727 LIRKGAHLNEKNKELLA 743
++ K L
Sbjct: 162 IVLNANGAPLKQGGYLV 178
>gnl|CDD|188975 cd09576, SAM_DGK-eta, SAM domain of diacylglycerol kinase eta. SAM
(sterile alpha motif) domain of DGK-eta subfamily
proteins is a protein-protein interaction domain.
Proteins of this subfamily are multidomain
diacylglycerol kinases. The SAM domain is located at the
C-terminus of two out of three isoforms of DGK-eta
protein. DGK-eta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic acid.
The SAM domain of DCK-eta proteins can form high
molecular weight homooligomers through head-to-tail
interactions as well as heterooligomers with the SAM
domain of DGK-delta proteins. The oligomerization plays
a role in the regulation of the DGK-delta intracellular
localization: it is responsible for sustained endosomal
localization of the protein and resulted in negative
regulation of DCK-eta catalytic activity.
Length = 65
Score = 30.3 bits (68), Expect = 0.82
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L E+F R I L + DLK +G+ G+ ++L+GI++L
Sbjct: 17 LSLGEYKEIFIRHDIRGSELLHLERRDLKDLGIPKVGHMKRILQGIKEL 65
>gnl|CDD|188928 cd09529, SAM_MLTK, SAM domain of MLTK subfamily. SAM (sterile
alpha motif) domain of MLTK subfamily is a
protein-protein interaction domain. Besides SAM domain,
these proteins have N-terminal protein tyrosine kinase
domain and leucine-zipper motif. Proteins of this group
act as mitogen-activated protein triple kinase in a
number of MAPK cascades. They can be activated by
autophosphorylation in response to stress signals.
MLTK-alpha is known to phosphorylate histone H3. In
mammals, MLTKs participate in the activation of the
JNK/SAPK, p38, ERK5 pathways, the transcriptional factor
NF-kB, in the regulation of the cell cycle checkpoint,
and in the induction of apoptosis in a hepatoma cell
line. Some members of this subfamily are
proto-oncogenes, thus MLTK-alpha is involved in
neoplasmic cell transformation and/or skin cancer
development in athymic nude mice. Based on in vivo
coprecipitation experiments in mammalian cells, it has
been demonstrated that MLTK proteins might form
homodimers/oligomers via their SAM domains.
Length = 71
Score = 30.2 bits (68), Expect = 0.88
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 822 ELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+LF+ IT L + EDL+ +G+ + G+ L IEKL
Sbjct: 29 DLFKENHITGKRLLLLTEEDLRDMGIGSKGHIIHLKSAIEKL 70
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 32.7 bits (74), Expect = 1.0
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 687 RVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIH 746
++K FL+S FK G + L+ A+ +V +L+ GA N E P+H
Sbjct: 13 QLKSFLSSKDA-FKADVHGHSALYYAIAD---NNVRLVCTLLNAGALKNLLENEF--PLH 66
Query: 747 LAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
AA L ++ LL G + D G TAL+ Q V++ + N
Sbjct: 67 QAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 117
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 32.8 bits (75), Expect = 1.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 14/59 (23%)
Query: 558 EVTEMLVKHGANVNVADLWKFTPL-------------HEAAAKALLQHGADINLKNTDG 603
++ ++L+ +GA+VN + TPL + K LL+ GADINLK +G
Sbjct: 51 KIVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNG 108
Score = 32.0 bits (73), Expect = 2.1
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 697 VNFKHPYTGDTPLHCAVTSPY----PKRKAIVESLIRKGAHLNEKNKELLAPIH---LAA 749
VN+K +TPL CAV K K IV+ L++ GA +N K ++PI +
Sbjct: 63 VNYKGYI--ETPL-CAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNS 119
Query: 750 DLGHLDVLDTLLRLGAKVNLV-DVLGQTALHRTARD--DKTQAVRVLLSHNAD 799
++ + D+L LL G VN V + G LH K +++LLS +
Sbjct: 120 NINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN 172
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 32.8 bits (74), Expect = 1.3
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 143 QYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPP-------AQYSGSGGDSVSLPPTSPP 195
Q + +PP S S G +S P Q S S GDS L P +
Sbjct: 264 QPSPPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARPRQQSSSSKGDSPELRPAAGH 323
Query: 196 QP 197
Sbjct: 324 LQ 325
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 32.5 bits (74), Expect = 1.6
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 25/87 (28%)
Query: 563 LVKHG--ANVNVADLWKF-----TPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTR 615
LVK ANV ++W F P++ A+ + G + PCTR
Sbjct: 249 LVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCE----------------PCTR 292
Query: 616 AVLSGDHKKEE--LLEAARMMGGGLHR 640
VL G H++E E A+ GLH+
Sbjct: 293 PVLPGQHEREGRWWWEDAKAKECGLHK 319
>gnl|CDD|188949 cd09550, SAM_EPH-A8, SAM domain of EPH-A8 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A8 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A8 receptors and appears to mediate cell-cell
initiated signal transduction. EPH-A8 receptors are
involved in ligand dependent (ephirin A2, A3, A5)
regulation of cell adhesion and migration, and in ligand
independent regulation of neurite outgrowth in neuronal
cells. They perform signaling in kinase dependent and
kinase independent manner. EPH-A8 receptors are known to
interact with a number of different proteins including
PI 3-kinase and AIDA1-like subfamily SAM repeat domain
containing proteins. However other domains (not SAM) of
EPH-A8 receptors are involved in these interactions.
Length = 65
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIE 861
+L ++ MN ED++++G++ G++ K+L I+
Sbjct: 28 SLGMVMRMNIEDIRRLGITLMGHQKKILTSIQ 59
>gnl|CDD|188985 cd09586, SAM_USH1G, SAM domain of USH1G. SAM (sterile alpha motif)
domain of USH1G (Usher syndrome type-1G protein)
proteins (also known as SANS) is a putative
protein-protein interaction domain. Members of this
group have an N-terminal ankyrin repeat region and
C-terminal SAM domain. USH1G is expressed in the hair
bundles of the inner ear sensory cells. It can form a
functional network with USH1B (myosin VIIa), USH1C
(harmonin b), USH1F (protocadherin-related 15), and
USH1D (cadherin 23). The SAM domain of the USH1G protein
is involved in synergetic interactions with the PDZ
domain of harmonin. Such interactions contribute to the
stability of harmonin. The network is required for the
correct cohesion of the hair bundle. Mutations in the
ush1g gene lead to Usher syndrome type 1G. This syndrome
is the cause of deaf-blindness in humans.
Length = 66
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEK 862
L ++ + + +RE+I LD L + DLK + + G R K+L ++
Sbjct: 12 LSMEEFIAILKREKIDLDALLLCSDNDLKSIHIP-LGPRKKILDACQR 58
>gnl|CDD|236962 PRK11718, PRK11718, anti-RNA polymerase sigma 70 factor;
Provisional.
Length = 161
Score = 31.4 bits (72), Expect = 1.8
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 20/80 (25%)
Query: 223 SYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL---LSEGADPTL--HN 277
S GHFE+ E L+ EA L + + + L L ++
Sbjct: 66 SAGHFEIYEQLVHEA---------------EAFGDLALALAAQIYPRLEATTQQALDFND 110
Query: 278 CHSKSAIDVAPTRELQQRLS 297
+ ++AID E QQ LS
Sbjct: 111 KYLETAIDDDNLLEFQQDLS 130
>gnl|CDD|219937 pfam08617, CGI-121, Kinase binding protein CGI-121. CGI-121 has
been shown to bind to the p53-related protein kinase
(PRPK). PRPK is a novel protein kinase which binds to
and induces phosphorylation of the tumour suppressor
protein p53. CGI-121 is part of a conserved protein
complex, KEOPS. The KEOPS complex is involved in
telomere uncapping and telomere elongation.
Interestingly this family also include archaeal
homologues, formerly in the DUF509 family. A structure
for these proteins has been solved by structural
genomics.
Length = 146
Score = 31.1 bits (71), Expect = 1.8
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 787 TQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQITLDILAEMNHEDLKQV 845
++A++ S++ +V + L+ LL L E EQ++LD D K++
Sbjct: 62 SEALKRFGISEGSNSVI--VVKVDDTEEDELESLLSLVEGEQVSLDDEELSKLTDEKKI 118
>gnl|CDD|188909 cd09510, SAM_aveugle-like, SAM domain of aveugle-like subfamily.
SAM (sterile alpha motif) domain of SAM_aveugle-like
subfamily is a protein-protein interaction domain. In
Drosophila, the aveugle (AVE) protein (also known as HYP
(Hyphen)) is involved in normal photoreceptor
differentiation, and required for epidermal growth
factor receptor (EGFR) signaling between ras and raf
genes during eye development and wing vein formation.
SAM domain of the HYP(AVE) protein interacts with SAM
domain of CNK, the multidomain scaffold protein
connector enhancer of kinase suppressor of ras.
CNK/HYP(AVE) complex interacts with KSR (kinase
suppressor of Ras) protein. This interaction leads to
stimulation of Ras-dependent Raf activation. This
subfamily also includes vertebrate AVE homologs - Samd10
and Samd12 proteins. Their exact function is unknown,
but they may play a role in signal transduction during
embryogenesis.
Length = 75
Score = 29.6 bits (67), Expect = 1.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 822 ELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
ELF + IT L +N L+++G++ +R +L+ I KL
Sbjct: 28 ELFLQHDITGRALLRLNDNKLERMGITDEDHRQDILREILKL 69
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 32.3 bits (73), Expect = 1.9
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 568 ANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEE- 626
ANV D+W F L +N + G ++ PCTR VL G H++E
Sbjct: 261 ANVEGKDVWNF----------LRTMDVPVNTLHAQGYVSIGCE-PCTRPVLPGQHEREGR 309
Query: 627 -LLEAARMMGGGLHR 640
E A+ GLH+
Sbjct: 310 WWWEDAKAKECGLHK 324
>gnl|CDD|112090 pfam03260, Lipoprotein_11, Lepidopteran low molecular weight (30
kD) lipoprotein.
Length = 253
Score = 31.7 bits (72), Expect = 1.9
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 47 DANPNTRDN--WNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR 104
DA T D W F PL E +YF +++ NQY + GTG D
Sbjct: 132 DAKDKTSDRVSWKFIPLWENNR---------VYFKILNTERNQY---LKLGTGTDSSGDH 179
Query: 105 SCYLAHGADPF 115
Y + AD F
Sbjct: 180 MAYGDNTADTF 190
>gnl|CDD|240818 cd12372, RRM_CFIm68_CFIm59, RNA recognition motif of pre-mRNA
cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6),
pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or
CPSF7), and similar proteins. This subfamily
corresponds to the RRM of cleavage factor Im (CFIm)
subunits. Cleavage factor Im (CFIm) is a highly
conserved component of the eukaryotic mRNA 3' processing
machinery that functions in UGUA-mediated poly(A) site
recognition, the regulation of alternative poly(A) site
selection, mRNA export, and mRNA splicing. It is a
complex composed of a small 25 kDa (CFIm25) subunit and
a larger 59/68/72 kDa subunit. Two separate genes, CPSF6
and CPSF7, code for two isoforms of the large subunit,
CFIm68 and CFIm59. Structurally related CFIm68 and
CFIm59, also termed cleavage and polyadenylation
specificity factor subunit 6 (CPSF7), or cleavage and
polyadenylation specificity factor 59 kDa subunit
(CPSF59), are functionally redundant. Both contains an
N-terminal RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain),
a central proline-rich region, and a C-terminal RS-like
domain. Their N-terminal RRM mediates the interaction
with CFIm25, and also serves to enhance RNA binding and
facilitate RNA looping. .
Length = 76
Score = 29.2 bits (66), Expect = 2.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 366 EHRDNGQSGGYTALQVAGENSKKLLQE 392
EH+ NG+S G+ ++ A E + ++E
Sbjct: 34 EHKANGKSKGFAYVEFASEAAAAAVKE 60
>gnl|CDD|188902 cd09503, SAM_tumor-p63,p73, SAM domain of tumor-p63,p73 proteins.
SAM (sterile alpha motif) domain of p63, p73
transcriptional factors is a putative protein-protein
interaction domain and lipid-binding domain. p63 and p73
are homologs to the tumor suppressor p53. They have a
C-terminal SAM domain in their longest spliced alpha
forms, while p53 doesn't have it. p63 or p73 knockout
mice show significant developmental abnormalities but no
increased cancer susceptibility, suggesting that p63 and
p73 play a role in regulation of normal development. It
was shown that SAM domain of p73 is able to bind some
membrane lipids. The structural rearrangements in SAM
are necessary to accomplish the binding. No evidence for
homooligomerization through SAM domains was found for
p63/p73 subfamily. It was suggested that the partner
proteins should be either more distantly related
SAM-containing domain proteins or proteins without the
SAM domain.
Length = 65
Score = 28.8 bits (65), Expect = 2.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 797 NADTSIVSLLVIFSCST---NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYR 853
D S+ S L CS N + LL +F+ ++ TL+ LA M ++ +R
Sbjct: 2 PTDNSVASWLTKLGCSNYIDNFHQQGLLSIFQLDEFTLEDLAAM------KIPEQ---HR 52
Query: 854 HKLLKGI 860
+K+ KG+
Sbjct: 53 NKIWKGL 59
>gnl|CDD|188974 cd09575, SAM_DGK-delta, SAM domain of diacylglycerol kinase delta.
SAM (sterile alpha motif) domain of DGK-delta subfamily
proteins is a protein-protein interaction domain.
Proteins of this subfamily are multidomain
diacylglycerol kinases with a SAM domain located at the
C-terminus. DGK-delta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic acid.
In particular DGK-delta is involved in the regulation of
clathrin-dependent endocytosis. The SAM domain of
DGK-delta proteins can form high molecular weight
homooligomers through head-to-tail interactions as well
as heterooligomers with the SAM domain of DGK-eta
proteins. The oligomerization plays a role in the
regulation of the DGK-delta intracellular localization:
it inhibits the translocation of the protein to the
plasma membrane from the cytoplasm. The SAM domain also
can bind Zn at multiple (not conserved) sites driving
the formation of highly ordered large sheets of
polymers, thus suggesting that Zn may play important
role in the function of DCK-delta.
Length = 65
Score = 28.4 bits (63), Expect = 4.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L ++F R + L + DLK +GV+ G+ ++L GI++L
Sbjct: 17 LSLCEYKDIFTRHDVRGSELLHLERRDLKDLGVTKVGHMKRILCGIKEL 65
>gnl|CDD|218041 pfam04353, Rsd_AlgQ, Regulator of RNA polymerase sigma(70) subunit,
Rsd/AlgQ. This family includes bacterial
transcriptional regulators that are thought to act
through an interaction with the conserved region 4 of
the sigma(70) subunit of RNA polymerase. The Pseudomonas
aeruginosa homologue, AlgQ, positively regulates
virulence gene expression and is associated with the
mucoid phenotype observed in Pseudomonas aeruginosa
isolates from cystic fibrosis patients.
Length = 153
Score = 29.9 bits (68), Expect = 4.5
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 20/80 (25%)
Query: 223 SYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL---LSEGADPTL--HN 277
S GHFE+ E L+ EA S LE+ L + + L ++
Sbjct: 66 SAGHFEIYEQLVDEA---------------EAFGDSGLELAKQLYPRIEATTEAALDFND 110
Query: 278 CHSKSAIDVAPTRELQQRLS 297
+ +S D +L + LS
Sbjct: 111 KYDESDGDCDQLEDLDEDLS 130
>gnl|CDD|221301 pfam11899, DUF3419, Protein of unknown function (DUF3419). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 398 to
802 amino acids in length.
Length = 376
Score = 30.7 bits (70), Expect = 5.0
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 9 YLLASGASIHARDDGGLHPLHNAC---------SFGHADVVRLLLEAD 47
YL A A +HA D L+P NA + + D RL E
Sbjct: 52 YLTAGPARVHAVD---LNPAQNALLELKLAAIRALPYEDFWRLFGEGK 96
>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1,
extended (e) SDRs. UDP-glucose 4 epimerase (aka
UDP-galactose-4-epimerase), is a homodimeric extended
SDR. It catalyzes the NAD-dependent conversion of
UDP-galactose to UDP-glucose, the final step in Leloir
galactose synthesis. This subgroup has the
characteristic active site tetrad and NAD-binding motif
of the extended SDRs. Extended SDRs are distinct from
classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 323
Score = 30.6 bits (70), Expect = 5.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 18/64 (28%)
Query: 675 CLLEACRQGDPSRVKKFLTS---------DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVE 725
LLEA R VK F+ S + V P T + PL+ T+PY + K +VE
Sbjct: 102 NLLEAMRA---HGVKNFVFSSSAAVYGEPETV----PITEEAPLNP--TNPYGRTKLMVE 152
Query: 726 SLIR 729
++R
Sbjct: 153 QILR 156
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 28.9 bits (65), Expect = 5.8
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 124 PLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSG 183
P + +D + D P V PP S + PP +G
Sbjct: 31 PPESAHPDDPPPV-GDPRPPVVDTPPPVSAVWVLPPP--SEPAAPPPDPEPPVPGPAGPP 87
Query: 184 GDSVSLPP-TSPPQP 197
P PP P
Sbjct: 88 SPLAPPAPARKPPLP 102
>gnl|CDD|224450 COG1533, SplB, DNA repair photolyase [DNA replication,
recombination, and repair].
Length = 297
Score = 30.4 bits (69), Expect = 6.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 831 LDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPS 868
LD+L E+ +V VS +L K +E SP
Sbjct: 132 LDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPE 169
>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
Length = 307
Score = 30.3 bits (69), Expect = 6.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 681 RQGDPSRVKKFLTSDVVNFKHPYTGDTPLHC--AVTSPYPKRKAIVESLIR 729
R+G+ R+K+ SD++N + D L VT P KRK I E+ IR
Sbjct: 60 RKGETERIKETF-SDMLNLRIVDAKDRFLDALKGVTDPEEKRKIIGETFIR 109
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic
domain catalyses the covalent attachment of ADP-ribose
units from NAD+ to itself and to a limited number of
other DNA binding proteins, which decreases their
affinity for DNA. Poly(ADP-ribose) polymerase is a
regulatory component induced by DNA damage. The
carboxyl-terminal region is the most highly conserved
region of the protein. Experiments have shown that a
carboxyl 40 kDa fragment is still catalytically active.
Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP,
tankyrase) catalyze the addition of up to 100 ADP_ribose
units from NAD+. PARPs 1 and 2 are localized in the
nucleaus, bind DNA, and are activated by DNA damage.
VPARP is part of the vault ribonucleoprotein complex.
Tankyrases regulates telomere length through interactions
with telomere repeat binding factor 1.
Length = 347
Score = 29.9 bits (68), Expect = 7.8
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 30/89 (33%)
Query: 1171 AAGEKRHLLMCRVTLGKSFLQFNAIKMA-HAPPGHHSV---------------------- 1207
A+ LL+C V LGK A MA P G HSV
Sbjct: 250 ASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVV 309
Query: 1208 -MGRPSSGG------LYFPEYVVYRGEQV 1229
+G+P G L + EY+VY QV
Sbjct: 310 PLGKPVPSGHKTDTSLLYNEYIVYDVAQV 338
>gnl|CDD|202997 pfam04392, ABC_sub_bind, ABC transporter substrate binding protein.
This family contains many hypothetical proteins and
some ABC transporter substrate binding proteins.
Length = 292
Score = 30.1 bits (68), Expect = 7.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 841 DLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQPGTLLIDLLSDDKEFITVAEEM 893
D KQ+GV A K+LKG + S + L I+ + + IT+ E +
Sbjct: 232 DYKQIGVQAANIVAKILKGKKPEDIPVSVAASPKLTINKKAAKELGITIPESL 284
>gnl|CDD|236600 PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.
Length = 293
Score = 29.9 bits (68), Expect = 8.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 402 QLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVA 449
A GD+ + LL+ P +V D G+ T L G ++VA
Sbjct: 179 AFFAALASGDLDALVALLA--PDVVLHADGGGKVPTALRPIYGADKVA 224
>gnl|CDD|223371 COG0294, FolP, Dihydropteroate synthase and related enzymes
[Coenzyme metabolism].
Length = 274
Score = 30.0 bits (68), Expect = 8.1
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 556 HYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADI 596
EV + + GA+ D+ A + GA I
Sbjct: 93 RAEVAPLALGAGADEIN-DVDGGGIDPALLAAVAAELGAPI 132
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 29.2 bits (65), Expect = 8.2
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 1059 LTPH--NVKHGANVNVADLWKFTPLHEAAAKGKA----DIVRLLLQHGADPSKKNRDGAT 1112
TP H A +N D +H AA K +A +I+ L++ GAD + +
Sbjct: 40 FTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE----- 94
Query: 1113 PLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
+L G++AL AA + + + L I+ N +P LA
Sbjct: 95 --------------MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI 140
Query: 1173 GEKRHLLM 1180
+ +M
Sbjct: 141 DNEDVAMM 148
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 29.1 bits (65), Expect = 10.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRK-GAHLNEKNKELLAPIHLAADLGHLD 755
+N K G+TPLH AV Y + + L + G ++ N P ++A +
Sbjct: 84 INGKERVFGNTPLHIAV---YTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK 140
Query: 756 VLDTLLRLGAK 766
+++ L GA+
Sbjct: 141 MMNILRAKGAQ 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 63,242,794
Number of extensions: 6323684
Number of successful extensions: 6587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6283
Number of HSP's successfully gapped: 416
Length of query: 1236
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1128
Effective length of database: 6,147,370
Effective search space: 6934233360
Effective search space used: 6934233360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.8 bits)