RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8898
(1236 letters)
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 262 bits (671), Expect = 1e-78
Identities = 141/385 (36%), Positives = 189/385 (49%), Gaps = 101/385 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGY-NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
+ L AA N ++ L + +A+D TPLH AA R
Sbjct: 17 AVLTGEYKK--DELLEAARSGNEEKLMALLTPLNVNC----HASDGRKSTPLHLAAGYNR 70
Query: 485 TQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG 544
++ LL L G D V+A+D G
Sbjct: 71 VRIVQLL-LQ---------------HGAD------------VHAKDKGGL---------- 92
Query: 545 LVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADIN 597
VPLHNACSYGHYEVTE+L+KHGA VN DLW+FTPLHEAA LL HGAD
Sbjct: 93 -VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 598 LKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCC 657
L N GK+A+D+A + + ++
Sbjct: 152 LVNCHGKSAVDMAP-------TPELRE--------------------------------- 171
Query: 658 KMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPY 717
R+ EFKGH LL+A R+ D ++VKK L +++NFK P + +T LHCAV S +
Sbjct: 172 --------RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223
Query: 718 PKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTA 777
PKRK + E L+RKGA++NEKNK+ + P+H+AA+ H DV++ L + GAK+N +D LGQTA
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 778 LHRTARDDKTQAVRVLLSHNADTSI 802
LHR A Q R+LLS+ +D SI
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSI 308
Score = 218 bits (558), Expect = 2e-63
Identities = 136/374 (36%), Positives = 168/374 (44%), Gaps = 115/374 (30%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EVTE+L+K GA VNAMDLWQFTPLHEAASK+R+EVCSLLLS GADP
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
TL NCH KSA+D+APT EL++RL+ EFKGH LL+A R+ D ++VKK L +++NFK P +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 334 GDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEP 393
+T L A H Q
Sbjct: 211 HETAL---------------------HCAVASLHPKRKQ--------------------- 228
Query: 394 PSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEY 453
V +L LL KG + VN ++ D TPLH AA V+E
Sbjct: 229 --VAEL---LL--RKGAN--------------VNEKNKDFM--TPLHVAAERAHNDVMEV 265
Query: 454 LLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGD 513
L HGA + NA D G T LH AA G Q LL LS G D
Sbjct: 266 LHKHGAKM----NALDSLGQTALHRAALAGHLQTCRLL-LS---------------YGSD 305
Query: 514 LTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVA 573
+ G T E + ++ + +
Sbjct: 306 ------------PSIISLQGF--TAAQMGN--------------EAVQQILSESTPMRTS 337
Query: 574 DLWKFTPLHEAAAK 587
D L EA+
Sbjct: 338 D--VDYRLLEASKA 349
Score = 151 bits (385), Expect = 3e-40
Identities = 50/239 (20%), Positives = 85/239 (35%), Gaps = 60/239 (25%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQ---LLEASKGGDMTVVTRLLSSCPHIVNCRDL 431
G +A+ +A + + E + LL+A++ D+ V + L+ +
Sbjct: 157 GKSAVDMAPTPELR------ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK-QPQ 209
Query: 432 DGRHSTPLHFAAG---YNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLS 488
T LH A R V E LL GA+V N +K TPLH AA++ +
Sbjct: 210 SHE--TALHCAVASLHPKRKQVAELLLRKGANV----NEKNKDFMTPLHVAAERAHNDVM 263
Query: 489 ALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPL 548
+L G +NA D+ G+ T LH AA
Sbjct: 264 EVL-HK---------------HGAK------------MNALDSLGQ--TALHRAA----- 288
Query: 549 HNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA--AKALLQHGADINLKNTDGKT 605
GH + +L+ +G++ ++ L FT + +L + + D +
Sbjct: 289 ----LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRL 343
Score = 138 bits (350), Expect = 1e-35
Identities = 65/237 (27%), Positives = 86/237 (36%), Gaps = 73/237 (30%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LLEA++ G+ + LL+ + D TPLH AAGYNRV +V+ LL HGADV
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKS--TPLHLAAGYNRVRIVQLLLQHGADV- 84
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+A DK G PLH A G +++ LL L G
Sbjct: 85 ---HAKDKGGLVPLHNACSYGHYEVTELL-LK---------------HGAC--------- 116
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
VNA D TPLH AA S EV +L+ HGA+ + + + +
Sbjct: 117 ---VNAMDLWQF--TPLHEAA---------SKNRVEVCSLLLSHGADPTLVNCHGKSAVD 162
Query: 583 EAA----------------------------AKALLQHGADINLKNTDGKTALDLAV 611
A K L + +TAL AV
Sbjct: 163 MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAV 219
Score = 138 bits (350), Expect = 1e-35
Identities = 53/244 (21%), Positives = 83/244 (34%), Gaps = 69/244 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L EA+ + V + LLS + G+ + + A + Y + +
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADP-TLVNCHGK--SAVDMAPTPELRERLTYEFKGHSLLQ 184
Query: 463 S-----------------KDNATDKWGFTPLHEAAQKG---RTQLSALLPLSPSAANDPL 502
+ + + T LH A R Q++ LL L
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL-LR-------- 235
Query: 503 RELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM 562
KG + VN ++ TPLH AA H +V E+
Sbjct: 236 -------KGAN------------VNEKNKDFM--TPLHVAA---------ERAHNDVMEV 265
Query: 563 LVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTR 615
L KHGA +N D T LH AA + LL +G+D ++ + G TA + +
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ 325
Query: 616 AVLS 619
+LS
Sbjct: 326 QILS 329
Score = 118 bits (298), Expect = 9e-29
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA VN DLW+FTPLHEAA+K + ++ LLL HGADP+ N G + +D+ +
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLAA 1172
+ +LL AA++ +L +V+K L N + T LH A
Sbjct: 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK-QPQSHE--TALHCAV 219
Score = 108 bits (273), Expect = 1e-25
Identities = 52/127 (40%), Positives = 67/127 (52%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R +V+ LL GA +HA+D GGL PLHNACS+GH +V LLL+ A N D W FTP
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAA+K + +VC S L+HGADP L N
Sbjct: 128 LHEAASKNRVEVC-------------------------------SLLLSHGADPTLVNCH 156
Query: 121 GQTPLDL 127
G++ +D+
Sbjct: 157 GKSAVDM 163
Score = 99.9 bits (250), Expect = 1e-22
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 32/138 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
RK V E LL GA+++ ++ + PLH A H DV+ +L + A N D+ T
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G C L++G+DP + + +
Sbjct: 284 LHRAALAGHLQTC-------------------------------RLLLSYGSDPSIISLQ 312
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G T + E V+ +L
Sbjct: 313 GFTAAQMG-NEAVQQILS 329
Score = 98.0 bits (245), Expect = 5e-22
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
N + +D K TPLH AA + IV+LLLQHGAD K++ G PL G
Sbjct: 45 TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY 104
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+V++LL + L +AA K + LL+ + + G+ + +
Sbjct: 105 EVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK--SAVD 162
Query: 1170 LAA 1172
+A
Sbjct: 163 MAP 165
Score = 95.6 bits (239), Expect = 3e-21
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 24/132 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG +V E LL GA ++A D PLH A S +V LLL A+P + +
Sbjct: 101 YGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYLAHGAD 113
+ A + Y G + + LA
Sbjct: 161 VDMAPTPELRER------LT---------YEFKGHS--LLQAAREADLAKVKKTLALEII 203
Query: 114 PFLKNQEGQTPL 125
F + Q +T L
Sbjct: 204 NFKQPQSHETAL 215
Score = 89.1 bits (222), Expect = 6e-19
Identities = 45/223 (20%), Positives = 69/223 (30%), Gaps = 48/223 (21%)
Query: 579 TPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK-EELLEAARMMGGG 637
+ L L A L K L A SG+ +K LL
Sbjct: 6 SALD------LADPSAKAVLTGEYKKDEL------LEAARSGNEEKLMALLT-------- 45
Query: 638 LHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV- 696
PL + D K L A V+ L
Sbjct: 46 ------PLNV-NC---------------HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
V+ K G PLH A + + E L++ GA +N + P+H AA ++V
Sbjct: 84 VHAKDKG-GLVPLHNACSY---GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV 139
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
LL GA LV+ G++A+ + + + ++
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL 182
Score = 88.3 bits (220), Expect = 1e-18
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++ GANVN + TPLH AA + D++ +L +HGA + + G T L
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR------- 286
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLL 1179
AA G+L + LL+ + + QG T + + +L
Sbjct: 287 -------------AALAGHLQTCRLLLSYGSDPSIISLQGF--TAAQMGNEAVQQIL 328
Score = 86.4 bits (215), Expect = 5e-18
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKG-KADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
A + +K L EAA G + ++ LL + + +TPL L
Sbjct: 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
+ LL G L +A G+ + LL +N D TPL
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF--TPL 128
Query: 1169 HLAA 1172
H AA
Sbjct: 129 HEAA 132
Score = 80.6 bits (200), Expect = 3e-16
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLD-------- 1115
KHGA +N D T LH AA G RLLL +G+DPS + G T
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQ 326
Query: 1116 LVREG-DQDVSDLLRGNSALLDAAKKGN 1142
++ E SD + LL+A+K G+
Sbjct: 327 ILSESTPMRTSD---VDYRLLEASKAGD 351
Score = 71.8 bits (177), Expect = 3e-13
Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 34/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHAD-VVRLLLEADANPNTRDNWNFT 59
+G+ L A + L A G+ + ++ LL + N + D T
Sbjct: 3 FGK--SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PLH AA + + L HGAD K++
Sbjct: 61 PLHLAAGYNRVRIV-------------------------------QLLLQHGADVHAKDK 89
Query: 120 EGQTPL 125
G PL
Sbjct: 90 GGLVPL 95
Score = 69.4 bits (171), Expect = 1e-12
Identities = 26/146 (17%), Positives = 38/146 (26%), Gaps = 49/146 (33%)
Query: 1 YGRKDVVEYLLASGASIHARDDGG---LH------------------PLHNACSFGHADV 39
R +V LL+ GA + G + L A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAK 193
Query: 40 VRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCP 99
V+ L + + + T LH A A + AE
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCAVASLHPK-RKQV--AE------------------- 231
Query: 100 MHKDRSCYLAHGADPFLKNQEGQTPL 125
L GA+ KN++ TPL
Sbjct: 232 ------LLLRKGANVNEKNKDFMTPL 251
Score = 68.3 bits (168), Expect = 3e-12
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHF-EVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G+ ++ +L N +A D + TPLH AA +R+ + LLL GAD
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Score = 67.9 bits (167), Expect = 4e-12
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 7/68 (10%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G LL+ G+ G + V+ +L T D
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSD--VDYR 342
Query: 61 LHEAAAKG 68
L EA+ G
Sbjct: 343 LLEASKAG 350
Score = 63.7 bits (156), Expect = 1e-10
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 555 GHY-EVTEMLVKHGANVNVADLWKFTPLHEAAA--------KALLQHGADINLKNTDGKT 605
G + + L A + +K L EAA L + + + T
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 606 ALDLAV 611
L LA
Sbjct: 61 PLHLAA 66
Score = 61.4 bits (150), Expect = 7e-10
Identities = 39/209 (18%), Positives = 58/209 (27%), Gaps = 54/209 (25%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKS---RLEVCSLLLSEGADPT 274
L A + + T LH A + R +V LLL +GA+
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 275 LHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYT 333
N + L A + ++ +N
Sbjct: 242 EKNKDFMTP---------------------LHVAAERAHNDVMEVLHKHGAKMNALDSL- 279
Query: 334 GDTPLPGTLLIDLLSDDKEFITVAEEMQATVR---------EHRDNGQSGGYTALQVAGE 384
G T L T R G+TA Q+ E
Sbjct: 280 GQTAL--------------HRAALAGHLQTCRLLLSYGSDPSIISL---QGFTAAQMGNE 322
Query: 385 NSKKLLQE--PPSVVDLESQLLEASKGGD 411
+++L E P D++ +LLEASK GD
Sbjct: 323 AVQQILSESTPMRTSDVDYRLLEASKAGD 351
Score = 56.0 bits (136), Expect = 4e-08
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G T LH A + L+ G+ + + + + + +L
Sbjct: 280 GQTALHRAALA---GHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQ-----ILSES 331
Query: 765 AKVNLVDVLGQT 776
+ DV +
Sbjct: 332 TPMRTSDVDYRL 343
Score = 50.2 bits (121), Expect = 2e-06
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 24/87 (27%)
Query: 1092 IVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLT 1151
L A L L+AA+ GN ++ LLT
Sbjct: 6 SALDLADPSAKAVLTGEYKKDEL--------------------LEAARSGNEEKLMALLT 45
Query: 1152 AD--NINCRDAQGRNSTPLHLAAGEKR 1176
N + D + TPLHLAAG R
Sbjct: 46 PLNVNCHASDGRKS--TPLHLAAGYNR 70
Score = 45.6 bits (109), Expect = 7e-05
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 225 GHF-EVTEMLIKAGANVNAMDLWQFTPLHEAASKS-RLEVCSLLLSEGAD 272
G F + L A ++ L EAA ++ +LL +
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Score = 36.3 bits (85), Expect = 0.052
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 10/48 (20%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLG 752
G T V+ ++ + + + + + A+ G
Sbjct: 313 GFTAAQMG--------NEAVQQILSESTPMRTSDVD--YRLLEASKAG 350
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 251 bits (643), Expect = 1e-73
Identities = 131/599 (21%), Positives = 179/599 (29%), Gaps = 196/599 (32%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GL PLH A GH + + L++ GA+ N ++ TPLH AA EV LL A
Sbjct: 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
++ L A R G ++V
Sbjct: 74 NAKAKDDQTP---------------------LHCAARIGHT---------NMVK------ 97
Query: 334 GDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEP 393
LL++ ++ G+T L +A
Sbjct: 98 --------LLLENNAN---------------PNLATT---AGHTPLHIAAREGHV----- 126
Query: 394 PSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEY 453
V LL K C G TPLH AA Y +V V E
Sbjct: 127 -ETVLA---LL--EKEAS--------------QACMTKKGF--TPLHVAAKYGKVRVAEL 164
Query: 454 LLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGD 513
LL A NA K G TPLH A + LL L +GG
Sbjct: 165 LLERDAHP----NAAGKNGLTPLHVAVHHNNLDIVKLL-LP---------------RGGS 204
Query: 514 LTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVA 573
++ G TPLH AA EV L+++G + N
Sbjct: 205 ------------PHSPAWNGY--TPLHIAA---------KQNQVEVARSLLQYGGSANAE 241
Query: 574 DLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK-- 624
+ TPLH AA LL A+ NL N G T L L H
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA-------QEGHVPVA 294
Query: 625 EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGD 684
+ L++ G + L A G+
Sbjct: 295 DVLIKH----GVMVD---------------------------ATTRMGYTPLHVASHYGN 323
Query: 685 PSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLA 743
VK L VN K G +PLH A IV L++ GA NE + +
Sbjct: 324 IKLVKFLLQHQADVNAKT-KLGYSPLHQAAQQ---GHTDIVTLLLKNGASPNEVSSDGTT 379
Query: 744 PIHLAADLGHLDVLDTLLRL---GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
P+ +A LG++ V D L + + V + D + V +L + D
Sbjct: 380 PLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSED 429
Score = 238 bits (609), Expect = 4e-69
Identities = 128/617 (20%), Positives = 189/617 (30%), Gaps = 196/617 (31%)
Query: 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRL 296
G + TPLH A+ L + LL GA P + N ++
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP------------- 50
Query: 297 SNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITV 356
L A R G +V + LL +
Sbjct: 51 --------LHMAARAGHT---------EVAKY-----------------LLQNK------ 70
Query: 357 AEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVT 416
A V + T L A ++V L LL +
Sbjct: 71 -----AKV-NAKAK---DDQTPLHCAARIGHT------NMVKL---LL--ENNAN----- 105
Query: 417 RLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPL 476
N G TPLH AA V V LL A K GFTPL
Sbjct: 106 ---------PNLATTAGH--TPLHIAAREGHVETVLALLEKEASQ----ACMTKKGFTPL 150
Query: 477 HEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKS 536
H AA+ G+ +++ LL L + NA G
Sbjct: 151 HVAAKYGKVRVAELL-LE---------------RDAH------------PNAAGKNGL-- 180
Query: 537 TPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKAL 589
TPLH A + + ++ ++L+ G + + +TPLH AA A++L
Sbjct: 181 TPLHVAV---------HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 590 LQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEA-ARMMGGGLHRYTWPLG 646
LQ+G N ++ G T L LA H + LL A
Sbjct: 232 LQYGGSANAESVQGVTPLHLAA-------QEGHAEMVALLLSKQA--------------- 269
Query: 647 TTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTG 705
+ + ++ L ++G + V V+ G
Sbjct: 270 --NGN---------------LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM-G 311
Query: 706 DTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGA 765
TPLH A +V+ L++ A +N K K +P+H AA GH D++ LL+ GA
Sbjct: 312 YTPLHVASHY---GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 766 KVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELFE 825
N V G T L R VL +TS V + S + ++
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV----SDKHRMSFPETVDEI- 423
Query: 826 REQITLDILAEMNHEDL 842
LD+ + E +
Sbjct: 424 -----LDVSEDEGEELI 435
Score = 211 bits (539), Expect = 9e-60
Identities = 98/405 (24%), Positives = 140/405 (34%), Gaps = 113/405 (27%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
S G G TPLH A+ + +V+ LL GA
Sbjct: 1 GSPGIS--------------GGGGGESGL--TPLHVASFMGHLPIVKNLLQRGASP---- 40
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
N ++ TPLH AA+ G T+++ L L
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYL-LQ---------------NKAK------------ 72
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
VNA+ + TPLH AA GH + ++L+++ AN N+A TPLH AA
Sbjct: 73 VNAKAKDDQ--TPLHCAA---------RIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 586 -------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEA-ARMMG 635
ALL+ A G T L +A + E LLE A
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAA-------KYGKVRVAELLLERDAHPNA 174
Query: 636 GGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSD 695
G + T PL H A + VK L
Sbjct: 175 AGKNGLT-PL----------------------------HV---AVHHNNLDIVKLLLPRG 202
Query: 696 V-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL 754
+ + G TPLH A + + SL++ G N ++ + + P+HLAA GH
Sbjct: 203 GSPHSPA-WNGYTPLHIAAKQ---NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 755 DVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+++ LL A NL + G T LH A++ VL+ H
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Score = 176 bits (449), Expect = 7e-48
Identities = 88/393 (22%), Positives = 129/393 (32%), Gaps = 112/393 (28%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PLH A YG V E+L++ A+ NA TPLH A + L++ LLL G P
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 277 NCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGD 335
+ + L A +Q + L N + G
Sbjct: 209 AWNGYTP---------------------LHIAAKQNQVEVARSLLQYGGSANAESVQ-GV 246
Query: 336 TPLPGTLLIDLLSDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGENSKKLLQE 392
TPL L+ + + QA + G T L + +
Sbjct: 247 TPL-------HLAAQEGHAEMVALLLSKQANG-NLGNKS---GLTPLHLVAQEGHV---- 291
Query: 393 PPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVE 452
V D+ L+ G V+ G TPLH A+ Y + +V+
Sbjct: 292 --PVADV---LI--KHGVM--------------VDATTRMGY--TPLHVASHYGNIKLVK 328
Query: 453 YLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGG 512
+LL H ADV NA K G++PLH+AAQ+G T + LL L G
Sbjct: 329 FLLQHQADV----NAKTKLGYSPLHQAAQQGHTDIVTLL-LK---------------NGA 368
Query: 513 DLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML---VKHGAN 569
N + G TPL A G+ VT++L +
Sbjct: 369 S------------PNEVSSDGT--TPLAIAK---------RLGYISVTDVLKVVTDETSF 405
Query: 570 VNVADLWKFTPLHEAAAKALLQHGADINLKNTD 602
V V+D + + +L D +
Sbjct: 406 VLVSDKHRMSFPE--TVDEILDVSEDEGEELIS 436
Score = 111 bits (281), Expect = 5e-26
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ G + + +TPLH AA + + ++ R LLQ+G + ++ G TPL L +EG
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
++ LL G + L A++G++ L+ ++ G TPLH
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY--TPLH 316
Query: 1170 LAAGEKRHLLM 1180
+A+ ++ +
Sbjct: 317 VAS-HYGNIKL 326
Score = 107 bits (271), Expect = 1e-24
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G V + L+ G + A G PLH A +G+ +V+ LL+ A+ N + ++P
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH+AA +G TD+ + L +GA P + +
Sbjct: 348 LHQAAQQGHTDIV-------------TLL------------------LKNGASPNEVSSD 376
Query: 121 GQTPLDL 127
G TPL +
Sbjct: 377 GTTPLAI 383
Score = 106 bits (268), Expect = 2e-24
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG+ V E LL A +A GL PLH A + D+V+LLL +P++ +TP
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 215
Query: 61 LHEAAAKGKTDVC-----IGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL 108
LH AA + + +V G +++S Q G T P+H + L
Sbjct: 216 LHIAAKQNQVEVARSLLQYG---GSANAESVQ------GVT--PLHLAAQEGHAEMVALL 264
Query: 109 -AHGADPFLKNQEGQTPLDLTVAED----VRSLLQ 138
+ A+ L N+ G TPL L E L++
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 103 bits (260), Expect = 2e-23
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+++ A VN TPLH AA G ++V+LLL++ A+P+ G TPL + REG
Sbjct: 67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+ L +G + L AAK G + + LL D + N G TPLH
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL--TPLH 184
Query: 1170 LAA 1172
+A
Sbjct: 185 VAV 187
Score = 103 bits (259), Expect = 3e-23
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ A+ FTPLH AA GK + LLL+ A P+ ++G TPL + V +
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
D+ LL G + L AAK+ + + LL + N QG TPLH
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV--TPLH 250
Query: 1170 LAAGEKRHLLMCR 1182
LAA ++ H M
Sbjct: 251 LAA-QEGHAEMVA 262
Score = 102 bits (256), Expect = 8e-23
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GA+ NV+++ TPLH AA G ++ + LLQ+ A + K +D TPL R G
Sbjct: 34 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
++ LL G++ L AA++G++ V LL + + C +G TPLH
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF--TPLH 151
Query: 1170 LAA 1172
+AA
Sbjct: 152 VAA 154
Score = 101 bits (255), Expect = 9e-23
Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDV 1124
G + TPLH A+ G IV+ LLQ GA P+ N TPL + R G +V
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 1125 SDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
+ L + L AA+ G+ V+ LL + N N G TPLH+A
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH--TPLHIA 120
Query: 1172 AGE 1174
A E
Sbjct: 121 ARE 123
Score = 101 bits (253), Expect = 2e-22
Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ D+V+ LL G S H+ G PLH A +V R LL+ + N TP
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248
Query: 61 LHEAAAKGKTDVCIGIYFAEH--SSKSNQYVYGIGGGTGCPMH-------KDRSCYL-AH 110
LH AA +G ++ S ++N + G T P+H + L H
Sbjct: 249 LHLAAQEGHAEM------VALLLSKQANGNLGNKSGLT--PLHLVAQEGHVPVADVLIKH 300
Query: 111 GADPFLKNQEGQTPL 125
G + G TPL
Sbjct: 301 GVMVDATTRMGYTPL 315
Score = 96.8 bits (242), Expect = 5e-21
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 14/139 (10%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G + V LL AS G PLH A +G V LLLE DA+PN TP
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 182
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL-AHGA 112
LH A D+ + G T P+H + + L +G
Sbjct: 183 LHVAVHHNNLDIV--KLLLPRGGSPH--SPAWNGYT--PLHIAAKQNQVEVARSLLQYGG 236
Query: 113 DPFLKNQEGQTPLDLTVAE 131
++ +G TPL L E
Sbjct: 237 SANAESVQGVTPLHLAAQE 255
Score = 96.8 bits (242), Expect = 5e-21
Identities = 42/135 (31%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++V+ LL + A+ + G PLH A GH + V LLE +A+ FTP
Sbjct: 90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149
Query: 61 LHEAAAKGKTDVCIGIYFAEH--SSKSNQYVYGIGGGTGCPMH-------KDRSCYL-AH 110
LH AA GK V AE ++ G G T P+H D L
Sbjct: 150 LHVAAKYGKVRV------AELLLERDAHPNAAGKNGLT--PLHVAVHHNNLDIVKLLLPR 201
Query: 111 GADPFLKNQEGQTPL 125
G P G TPL
Sbjct: 202 GGSPHSPAWNGYTPL 216
Score = 96.4 bits (241), Expect = 5e-21
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 31/125 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +V+ LL GAS + + PLH A GH +V + LL+ A N + + TP
Sbjct: 24 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G T++ + + L + A+P L
Sbjct: 84 LHCAARIGHTNMV-------------KLL------------------LENNANPNLATTA 112
Query: 121 GQTPL 125
G TPL
Sbjct: 113 GHTPL 117
Score = 96.0 bits (240), Expect = 7e-21
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ AN N+ + TPLH A +G + +L++HG R G TPL + G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+ L G S L AA++G+ V LL + N + G TPL
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT--TPLA 382
Query: 1170 LAA 1172
+A
Sbjct: 383 IAK 385
Score = 95.3 bits (238), Expect = 2e-20
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 31/125 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +V +YLL + A ++A+ PLH A GH ++V+LLLE +ANPN TP
Sbjct: 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA +G + L A ++
Sbjct: 117 LHIAAREGHVETV-------------------------------LALLEKEASQACMTKK 145
Query: 121 GQTPL 125
G TPL
Sbjct: 146 GFTPL 150
Score = 94.9 bits (237), Expect = 2e-20
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 28/126 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG +V++LL A ++A+ G PLH A GH D+V LLL+ A+PN + TP
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L A G V + + + + ++
Sbjct: 381 LAIAKRLGYISVT-------------DVLKVV---------------TDETSFVLVSDKH 412
Query: 121 GQTPLD 126
+ +
Sbjct: 413 RMSFPE 418
Score = 85.2 bits (212), Expect = 3e-17
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++H A+VN ++PLH+AA +G DIV LLL++GA P++ + DG TPL + R G
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
V+D+L+ + + + + D +
Sbjct: 391 SVTDVLKVVTD------ETS-----------FVLVSDKHRM--SFPETV 420
Score = 81.8 bits (203), Expect = 3e-16
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 31/112 (27%)
Query: 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
G S + GL PLH A GH +V+ LL+ A+PN + TPLH AA G T+V
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 74 IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L + A K ++ QTPL
Sbjct: 64 -------------------------------KYLLQNKAKVNAKAKDDQTPL 84
Score = 61.4 bits (150), Expect = 9e-10
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLL---LQHGADPSKKNRDGATPLDLVRE 1119
+K+GA+ N TPL A G + +L + ++ + + V E
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422
Score = 45.9 bits (110), Expect = 6e-05
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 12/63 (19%)
Query: 214 GLVPLHNACSYGHFEVTEML---IKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G PL A G+ VT++L + V D + + +L
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVS 427
Query: 271 ADP 273
D
Sbjct: 428 EDE 430
Score = 34.8 bits (81), Expect = 0.19
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 12/54 (22%)
Query: 1 YGRKDVVEYL---LASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
G V + L + + D + V +L+ +
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEG 431
Score = 34.4 bits (80), Expect = 0.22
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
+ V V+D + + V +L D ++
Sbjct: 400 TDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEGEEL 434
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 198 bits (507), Expect = 4e-57
Identities = 67/384 (17%), Positives = 117/384 (30%), Gaps = 104/384 (27%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
+ D + +E + K + A G T
Sbjct: 1 MKMADAKQK--RNEQLKRWIGSETDLEPPVVKRKKTKVKFD-----DGAVFLAACSSGDT 53
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L L +G D +N + GL
Sbjct: 54 EEVLRL-LE---------------RGAD------------INYAN-----------VDGL 74
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
LH AC + ++ + LV++GAN+N D + PLH AA A+ L+ GA +
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Query: 599 KNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCSCC 656
N++G T LD+A ++ + + + + + D
Sbjct: 135 VNSEGDTPLDIAE-------EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA------ 181
Query: 657 CKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNF-KHPYTGDTPLHCAVTS 715
+++L S +N +H +G T LH A
Sbjct: 182 --------------------------------RQWLNSGHINDVRHAKSGGTALHVAAAK 209
Query: 716 PYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQ 775
Y +++ LI+ +N K+ + P+H AA G + L+ + V+ +GQ
Sbjct: 210 GY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 776 TALHRTARDDKTQAVRVLLSHNAD 799
TA D + N
Sbjct: 267 TAFDVADEDILGYLEELQKKQNLL 290
Score = 161 bits (409), Expect = 5e-44
Identities = 68/371 (18%), Positives = 111/371 (29%), Gaps = 117/371 (31%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEA 308
+ + G L A
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKT---KVKFDD-------------------GAVFLAA 47
Query: 309 CRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREH 367
C GD V + L +N+ + +
Sbjct: 48 CSSGDTEEVLRLLERGADINYA--------------------NVD--------------- 72
Query: 368 RDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVN 427
G TAL A + +V L+ G + +N
Sbjct: 73 -------GLTALHQACIDDNV------DMVKF---LV--ENGAN--------------IN 100
Query: 428 CRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQL 487
D +G PLH AA + + EYL++ GA V A + G TPL A ++ +L
Sbjct: 101 QPDNEGW--IPLHAAASCGYLDIAEYLISQGAHV----GAVNSEGDTPLDIAEEEAMEEL 154
Query: 488 SALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQ-TVNARDTAGRKSTPLHFAAGLV 546
++ D E + + L + +G T LH AA
Sbjct: 155 LQNE-VN-RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG--TALHVAA--- 207
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLK 599
+ G+ EV ++L++ +VN+ D +TPLH AA + L+++ D+
Sbjct: 208 ------AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261
Query: 600 NTDGKTALDLA 610
N G+TA D+A
Sbjct: 262 NKVGQTAFDVA 272
Score = 156 bits (397), Expect = 2e-42
Identities = 58/234 (24%), Positives = 81/234 (34%), Gaps = 62/234 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A GD V RLL I N ++DG T LH A + V +V++L+ +GA++
Sbjct: 44 FLAACSSGDTEEVLRLLERGADI-NYANVDGL--TALHQACIDDNVDMVKFLVENGANI- 99
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N D G+ PLH AA G ++ L +S +G
Sbjct: 100 ---NQPDNEGWIPLHAAASCGYLDIAEYL-IS---------------QGAH--------- 131
Query: 523 PQTVNARDTAGRKSTPLHFAA------------------GLVPLHNACSYGHYEVTEMLV 564
V A ++ G TPL A + + L
Sbjct: 132 ---VGAVNSEGD--TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN 186
Query: 565 KHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N T LH AA K L+Q D+N+K+ DG T L A
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Score = 144 bits (366), Expect = 3e-38
Identities = 63/286 (22%), Positives = 98/286 (34%), Gaps = 82/286 (28%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GL LH AC + ++ + L++ GAN+N D + PLH AAS L++ L+S+GA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
N + +D+A E + E + + + +
Sbjct: 133 GAVNSEGDTPLDIA-----------EEEAM--EE---------LLQNEVN-----RQGVD 165
Query: 334 GDTPL---PGTLLID----LLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVA-GEN 385
+ +L D L S H + G TAL VA +
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGH-----------INDVRHAKS----GGTALHVAAAKG 210
Query: 386 SKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGY 445
+ V+ L L+ D VN +D DG TPLH AA +
Sbjct: 211 YTE-------VLKL---LI--QARYD--------------VNIKDYDGW--TPLHAAAHW 242
Query: 446 NRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ L+ + D+ A +K G T A + L L
Sbjct: 243 GKEEACRILVENLCDM----EAVNKVGQTAFDVADEDILGYLEELQ 284
Score = 109 bits (274), Expect = 4e-26
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
V++GAN+N D + PLH AA+ G DI L+ GA N +G TPLD+ E +
Sbjct: 93 VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152
Query: 1123 DVSDLL------RGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAA 1172
++ +A + + ++ L + N G T LH+AA
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRD-ARQWLNSGHINDVRHAKSGG--TALHVAA 207
Score = 108 bits (273), Expect = 5e-26
Identities = 42/128 (32%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G + V LL GA I+ + GL LH AC + D+V+ L+E AN N DN + P
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
LH AA+ G D+ AE YL + GA N
Sbjct: 110 LHAAASCGYLDI------AE--------------------------YLISQGAHVGAVNS 137
Query: 120 EGQTPLDL 127
EG TPLD+
Sbjct: 138 EGDTPLDI 145
Score = 98.0 bits (245), Expect = 3e-22
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 32/137 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+D ++L + + G LH A + G+ +V++LL++A + N +D +TP
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA GK + C + + D N+
Sbjct: 236 LHAAAHWGKEEAC-------------------------------RILVENLCDMEAVNKV 264
Query: 121 GQTPLDLTVAEDVRSLL 137
GQT D+ ED+ L
Sbjct: 265 GQTAFDVA-DEDILGYL 280
Score = 94.9 bits (237), Expect = 3e-21
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
D+V++L+ +GA+I+ D+ G PLH A S G+ D+ L+ A+ ++ TP
Sbjct: 83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTG--------CPMHKDRSCYL-AHG 111
L A + ++ Q G M +D +L +
Sbjct: 143 LDIAEEEAMEELL-------------QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 112 ADPFLKNQEGQTPL 125
+ + G T L
Sbjct: 190 INDVRHAKSGGTAL 203
Score = 86.8 bits (216), Expect = 1e-18
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
V V A + G + V LL+ GAD + N DG T L + +
Sbjct: 28 VVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV 86
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
D+ L G L AA G L + L++ ++ +++G TPL
Sbjct: 87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD--TPLD 144
Query: 1170 LAAGE 1174
+A E
Sbjct: 145 IAEEE 149
Score = 86.8 bits (216), Expect = 2e-18
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GA++N A++ T LH+A D+V+ L+++GA+ ++ + +G PL G
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHL 1170
D+++ L G++ L A ++ +Q + ++ A+ +
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR 179
Query: 1171 AAGE 1174
A +
Sbjct: 180 DARQ 183
Score = 84.5 bits (210), Expect = 1e-17
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 23/117 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
N T LH AAAKG ++++LL+Q D + K+ DG TPL
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA------- 238
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLL 1179
AA G + L+ ++ + G+ T +A + L
Sbjct: 239 -------------AAHWGKEEACRILVENLCDMEAVNKVGQ--TAFDVADEDILGYL 280
Score = 79.1 bits (196), Expect = 6e-16
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ +VN+ D +TPLH AA GK + R+L+++ D N+ G T D+ +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278
Query: 1123 DVSDLLRGNSALLDAAKKG 1141
+ +L + + L ++
Sbjct: 279 YLEELQKKQNLLHSEKREK 297
Score = 72.1 bits (178), Expect = 1e-13
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 216 VPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
ACS G E L++ GA++N ++ T LH+A +++ L+ GA+
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Score = 66.4 bits (163), Expect = 9e-12
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A +G E +L++ ++ A++ T A + L +
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 59.8 bits (146), Expect = 1e-09
Identities = 10/57 (17%), Positives = 11/57 (19%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G E + A S E LL GAD
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLERGADI 66
Score = 55.2 bits (134), Expect = 5e-08
Identities = 13/109 (11%), Positives = 22/109 (20%), Gaps = 32/109 (29%)
Query: 17 IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI 76
+ D G + + + + + A + G T+
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEE---- 55
Query: 77 YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L GAD N +G T L
Sbjct: 56 --VL-------------------------RLLERGADINYANVDGLTAL 77
Score = 54.0 bits (131), Expect = 1e-07
Identities = 6/55 (10%), Positives = 19/55 (34%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+G+++ L+ + + A + G A + L + + + +
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296
Score = 33.2 bits (77), Expect = 0.51
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKE 740
G T A + E ++ +EK ++
Sbjct: 265 GQTAFDVADED---ILGYLEELQKKQNLLHSEKREK 297
Score = 31.3 bits (72), Expect = 1.6
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNA 242
G A + E+ K +
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSE 293
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 174 bits (444), Expect = 6e-48
Identities = 62/422 (14%), Positives = 111/422 (26%), Gaps = 122/422 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ A++ G V RL+ + ++ G T LH A + V +YL + G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSP-TIQNRFGC--TALHLACKFGCVDTAKYLASVGEVHS 80
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
G P+H A +T L L + A
Sbjct: 81 LWH------GQKPIHLAVMANKTDLVVAL-VE-GAKER---------------------- 110
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
G +P EV E +V T LH
Sbjct: 111 ---------------------GQMPESLLNECDEREVNE------IGSHVKHCKGQTALH 143
Query: 583 EAA---------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAA 631
K L+Q GA K+ +T L A+ +++ + +++
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM-------EFRNREALDLMMDTV 196
Query: 632 RMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKF 691
+ ++ L A +F
Sbjct: 197 PSKSS-----------LRLD---------------YANKQGNSHLHWAILINWEDVAMRF 230
Query: 692 LTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN------------ 738
+ + VN + PL+ +V + + + L++K +
Sbjct: 231 VEMGIDVNMEDNE-HTVPLYLSVRA---AMVLLTKELLQKTDVFLIQACPYHNGTTVLPD 286
Query: 739 -KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
L + AAD +VL L +V G + + R+ L+ +
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346
Query: 798 AD 799
A
Sbjct: 347 AP 348
Score = 159 bits (405), Expect = 8e-43
Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 43/219 (19%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHI----VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHG 458
L+ A + + + ++ + P ++ + G + LH+A N V + G
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN--SHLHWAILINWEDVAMRFVEMG 234
Query: 459 ADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVK 518
DV N D PL+ + + L+ L L + +
Sbjct: 235 IDV----NMEDNEHTVPLYLSVRAAMVLLTKEL-LQKTDVFL--------------IQAC 275
Query: 519 KLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKF 578
N TV + AA EV ++L + V +
Sbjct: 276 PYHNGTTVLPDRVVWL--DFVPAAA---------DPSKQEVLQLLQEKLDEVVRSLNTGA 324
Query: 579 TPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
+ + L A + ++ + ++
Sbjct: 325 GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 152 bits (387), Expect = 2e-40
Identities = 49/397 (12%), Positives = 92/397 (23%), Gaps = 112/397 (28%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G LH AC +G + + L G + P+H A ++ ++ L+ +
Sbjct: 53 GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAKER 110
Query: 274 ---TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSR-VKKFLTS---DVV 326
+ +V E+ + + L G + K L
Sbjct: 111 GQMPESLLNECDEREVN---EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-P 166
Query: 327 NFKHPYTGDTPL-----PG-----TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGY 376
K +TPL L++D + + ++ + G
Sbjct: 167 TAKDKA-DETPLMRAMEFRNREALDLMMDTVPSKS---------SLRL-DYANK---QGN 212
Query: 377 TALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHS 436
+ L A + + V + G D VN D +
Sbjct: 213 SHLHWAILINWE------DVAMR---FV--EMGID--------------VNMEDNEHT-- 245
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKD---------NATDKWGFTPLHEAAQKGRTQL 487
PL+ + V + + LL + + AA + ++
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305
Query: 488 SALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVP 547
LL K + V G
Sbjct: 306 LQLL-QE---------------KLDE------------VVRSLNTGA--GGAVKRK---- 331
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA 584
V M + A V + +
Sbjct: 332 -----KKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 152 bits (387), Expect = 2e-40
Identities = 49/302 (16%), Positives = 88/302 (29%), Gaps = 82/302 (27%)
Query: 512 GDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
G +T K +N D +H AA G + L++ G +
Sbjct: 3 GSMTDFPK-LN---RIKSDDENM--EKIHVAA---------RKGQTDEVRRLIETGVSPT 47
Query: 572 VADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK 624
+ + + T LH A AK L G +L G+ + LAV +
Sbjct: 48 IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAV-------MANKTD 98
Query: 625 --EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQ 682
L+E A + G
Sbjct: 99 LVVALVEGA----------------KERGQMP---------------------ESLLNEC 121
Query: 683 GDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELL 742
+ + + KH G T LH V P+ +++ L++ GA K+K
Sbjct: 122 DEREVNEI-----GSHVKH-CKGQTALHWCVGL-GPEYLEMIKILVQLGASPTAKDKADE 174
Query: 743 APIHLAADLGHLDVLDTLLRL-----GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
P+ A + + + LD ++ +++ + G + LH + +
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234
Query: 798 AD 799
D
Sbjct: 235 ID 236
Score = 150 bits (381), Expect = 1e-39
Identities = 64/397 (16%), Positives = 109/397 (27%), Gaps = 138/397 (34%)
Query: 232 MLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRE 291
M N D +H AA K + + L+ G PT+ N +A
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-------- 56
Query: 292 LQQRLSNEFKGHCLLEACRQGDPSRVKKFLTS--DVVNFKHPYTGDTPLPGTLLIDLLSD 349
L AC+ G K+L S +V + H G P+
Sbjct: 57 -------------LHLACKFGC-VDTAKYLASVGEVHSLWH---GQKPI----------- 88
Query: 350 DKEFITVAEEMQATVREHRD-------NGQSGGYTALQVAGENSKKLLQEPPSVVDLESQ 402
A + D + G + E ++ + E
Sbjct: 89 ----------HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE---------- 128
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAA--GYNRVAVVEYLLAHGAD 460
+ + G+ T LH+ G + +++ L+ GA
Sbjct: 129 ---------------------IGSHVKHCKGQ--TALHWCVGLGPEYLEMIKILVQLGAS 165
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
A DK TPL A + + L+ + +
Sbjct: 166 P----TAKDKADETPLMRAMEFRNREALDLM-MDTVPSK----------SSLR------- 203
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
++ + G + LH+A +V V+ G +VN+ D P
Sbjct: 204 -----LDYANKQGN--SHLHWAI---------LINWEDVAMRFVEMGIDVNMEDNEHTVP 247
Query: 581 LHEAA-------AKALLQHGADINLKNT---DGKTAL 607
L+ + K LLQ ++ +G T L
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Score = 132 bits (335), Expect = 1e-33
Identities = 47/363 (12%), Positives = 88/363 (24%), Gaps = 104/363 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ A +V L+ G+ P + V E
Sbjct: 88 IHLAVMANKTDLVVALVEGA-------KERGQ--MPESLLNECDEREVNEIGS------- 131
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSA--LLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
+ G T LH G L +L + G
Sbjct: 132 ---HVKHCKGQTALHWCVGLGPEYLEMIKIL-VQ---------------LGAS------- 165
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-----KHGANVNVADL 575
A+D A TPL A + + E ++++ K ++ A+
Sbjct: 166 -----PTAKDKADE--TPLMRAM---------EFRNREALDLMMDTVPSKSSLRLDYANK 209
Query: 576 WKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EE 626
+ LH A A ++ G D+N+++ + L L+V +E
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV-------RAAMVLLTKE 262
Query: 627 LLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPS 686
LL+ + Y GTT + A
Sbjct: 263 LLQKTDVFLIQACPYHN--GTT----------------VLPDRVVWLDFVPAAADPSKQE 304
Query: 687 RVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPI 745
++ V G A+ + A + +++
Sbjct: 305 VLQLLQEKLDEVVRSLNT-GAGGAVKRKKK---AAPAVKRMKLAPSAPVRTRSRSRARSS 360
Query: 746 HLA 748
++
Sbjct: 361 AVS 363
Score = 118 bits (297), Expect = 1e-28
Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 54/187 (28%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
D + +H AA + V L+ G +++G T LH A + G
Sbjct: 13 RIKSDDENM--EKIHVAARKGQTDEVRRLIETGVSP----TIQNRFGCTALHLACKFGCV 66
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L S G + G
Sbjct: 67 DTAKYL-AS---------------VGEV------------HSLWH-------------GQ 85
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQ-HGADINLKNTDGK 604
P+H A ++ LV+ P + + ++K+ G+
Sbjct: 86 KPIHLAVMANKTDLVVALVEGAKERG------QMPESLLNECDEREVNEIGSHVKHCKGQ 139
Query: 605 TALDLAV 611
TAL V
Sbjct: 140 TALHWCV 146
Score = 94.6 bits (236), Expect = 9e-21
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 30/152 (19%)
Query: 1059 LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-V 1117
+ K ++ A+ + LH A D+ ++ G D + ++ + PL L V
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252
Query: 1118 REGDQDVSDLL-------------------------RGNSALLDAAKKGNLGRVQKLLTA 1152
R ++ L + AA +Q L
Sbjct: 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312
Query: 1153 -DNINCRDAQGRNSTPLHLAAGEKRHLLMCRV 1183
D + G +K + R+
Sbjct: 313 LDEVVRSLNTGA--GGAVKRK-KKAAPAVKRM 341
Score = 92.2 bits (230), Expect = 7e-20
Identities = 16/147 (10%), Positives = 39/147 (26%), Gaps = 20/147 (13%)
Query: 1 YGRKDVVEYLLAS-----GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+ ++ ++ ++ + + + G LH A DV +E + N DN
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN 242
Query: 56 WNFTPLHEAAAKGKTDVC---------IGIYFAEHSSKSNQYVYGIGGGTGCPM-----H 101
+ PL+ + + I + + + + P
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302
Query: 102 KDRSCYL-AHGADPFLKNQEGQTPLDL 127
++ L + G
Sbjct: 303 QEVLQLLQEKLDEVVRSLNTGAGGAVK 329
Score = 89.9 bits (224), Expect = 3e-19
Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 31/152 (20%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G+ D V L+ +G S ++ G LH AC FG D + L + P
Sbjct: 30 KGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ--KP 87
Query: 61 LHEAAAKGKTDV------------CIGIYFAEHSSKSNQYVYGIG-------GGT----- 96
+H A KTD+ + + + V IG G T
Sbjct: 88 IHLAVMANKTDLVVALVEGAKERGQMPESLL--NECDEREVNEIGSHVKHCKGQTALHWC 145
Query: 97 --GCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
P + + L GA P K++ +TPL
Sbjct: 146 VGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Score = 89.2 bits (222), Expect = 5e-19
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ G + + + + T LH A G D + L G S G P+ L V
Sbjct: 40 IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKT 97
Query: 1123 DVSDLL------RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
D+ L RG + + + + +G+ T LH
Sbjct: 98 DLVVALVEGAKERGQMPESLLNECDEREVNEI-----GSHVKHCKGQ--TALHWCV 146
Score = 88.0 bits (219), Expect = 1e-18
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 24/137 (17%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKA--DIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
+V T LH G +++++L+Q GA P+ K++ TPL + +++
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187
Query: 1124 VSDLL-----------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS 1165
DL+ +GNS L A + + ++N D +
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT-- 245
Query: 1166 TPLHLAAGEKRHLLMCR 1182
PL+L+ +L+ +
Sbjct: 246 VPLYLSV-RAAMVLLTK 261
Score = 84.9 bits (211), Expect = 2e-17
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 36/129 (27%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD-----ANPNTRDNW 56
++++ L+ GAS A+D PL A F + + + L+++ + +
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 57 NFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFL 116
+ LH A DV ++ G D +
Sbjct: 211 GNSHLHWAILINWEDVA-------------------------------MRFVEMGIDVNM 239
Query: 117 KNQEGQTPL 125
++ E PL
Sbjct: 240 EDNEHTVPL 248
Score = 81.1 bits (201), Expect = 3e-16
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 30/139 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLL-----QHGADPSKKNRDGATPLDL-V 1117
V+ GA+ D TPL A + + L++ + N+ G + L +
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219
Query: 1118 REGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLT-ADNINCRDAQGRN 1164
+DV+ L + + + ++LL D + N
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279
Query: 1165 -----------STPLHLAA 1172
+ AA
Sbjct: 280 GTTVLPDRVVWLDFVPAAA 298
Score = 79.5 bits (197), Expect = 8e-16
Identities = 15/140 (10%), Positives = 29/140 (20%), Gaps = 44/140 (31%)
Query: 1 YGRKDVVEYLLA-------------SGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD 47
+ + LL +G ++ L + A +V++LL E
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Query: 48 ANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY 107
N + K V
Sbjct: 314 DEVVRSLNTGAGGAVKRKKKAAPAVK-------------------------------RMK 342
Query: 108 LAHGADPFLKNQEGQTPLDL 127
LA A +++ +
Sbjct: 343 LAPSAPVRTRSRSRARSSAV 362
Score = 77.6 bits (192), Expect = 4e-15
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 23/108 (21%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDV 1124
+G V + + AA K ++++LL + + + GA
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK-------- 329
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
KK + L + R ++
Sbjct: 330 ------------RKKKAAPAVKRMKLAPSAPVRTRSRSRA--RSSAVS 363
Score = 76.8 bits (190), Expect = 7e-15
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+++V++ L + + G V R+ L A TR
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARS 359
Query: 61 LHEA 64
+
Sbjct: 360 SAVS 363
Score = 75.3 bits (186), Expect = 2e-14
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+ +H A G + LI+ G + + + T LH A ++ L S G
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Score = 74.1 bits (183), Expect = 5e-14
Identities = 7/53 (13%), Positives = 15/53 (28%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ V + + K + R+ L A ++R A +
Sbjct: 310 QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 71.1 bits (175), Expect = 5e-13
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 35/114 (30%)
Query: 13 SGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
+ DD + +H A G D VR L+E +P ++ + T LH A G D
Sbjct: 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68
Query: 73 CIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
A+ YL + G GQ P+
Sbjct: 69 ------AK--------------------------YLASVGEVH--SLWHGQKPI 88
Score = 69.5 bits (171), Expect = 2e-12
Identities = 7/75 (9%), Positives = 15/75 (20%), Gaps = 3/75 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+ A ++ +++ L K + V L
Sbjct: 290 WLDFVPAAADP---SKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346
Query: 765 AKVNLVDVLGQTALH 779
A V +
Sbjct: 347 APVRTRSRSRARSSA 361
Score = 45.6 bits (109), Expect = 8e-05
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 1095 LLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL------------RGNSALLDAAKKG 1141
+ + K + + + + R+G D L G +AL A K G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 1142 NLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
+ + L + + P+HLA
Sbjct: 65 CVDTAKYLASVGEVHSLWH----GQKPIHLAV 92
Score = 39.9 bits (94), Expect = 0.005
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 33/85 (38%)
Query: 42 LLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH 101
+ N D+ N +H AA KG+TD
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDE------VR--------------------- 37
Query: 102 KDRSCYL-AHGADPFLKNQEGQTPL 125
L G P ++N+ G T L
Sbjct: 38 -----RLIETGVSPTIQNRFGCTAL 57
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 163 bits (416), Expect = 3e-45
Identities = 61/377 (16%), Positives = 93/377 (24%), Gaps = 120/377 (31%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGAN---VNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
G LH A + H + L+ A ++ + T LH AA L + G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 271 ADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKH 330
A + +A L ACR
Sbjct: 69 AGVLVAERGGHTA---------------------LHLACRVRA---------HTCA---- 94
Query: 331 PYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLL 390
+L+ + + A + N +
Sbjct: 95 ----------CVLLQPRPS----HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN-- 138
Query: 391 QEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAV 450
E + + + + DG TPLH A + +
Sbjct: 139 ---------EEEPRDEDWRLQ--------------LEAENYDGH--TPLHVAVIHKDAEM 173
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACK 510
V L GAD++ + G TPLH A + + LL L
Sbjct: 174 VRLLRDAGADLNKPEP---TCGRTPLHLAVEAQAASVLELL-LK---------------A 214
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
G D AR GR TPL A + + +L HGA
Sbjct: 215 GAD------------PTARMYGGR--TPLGSAL---------LRPNPILARLLRAHGAPE 251
Query: 571 NVADLWKFTPLHEAAAK 587
K +P + +
Sbjct: 252 PEDGGDKLSPCSSSGSD 268
Score = 156 bits (397), Expect = 1e-42
Identities = 57/341 (16%), Positives = 90/341 (26%), Gaps = 73/341 (21%)
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
+ G T LH A L L SA +
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFL-LGFSA------------------------GHEY 37
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
++ ++ G+ T LH AA G E L GA V VA+ T LH A
Sbjct: 38 LDLQNDLGQ--TALHLAA---------ILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
Query: 586 -------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGL 638
A LLQ +D + D ++
Sbjct: 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC-------TPDTSHAPAAVDSQPNPENE 139
Query: 639 HRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTS---D 695
+ ++ L A D + + L D
Sbjct: 140 EEPRDEDWRLQLE---------------AENYDGHTPLHVAVIHKDA-EMVRLLRDAGAD 183
Query: 696 VVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD 755
+ N P G TPLH AV + + +++E L++ GA + P+ A +
Sbjct: 184 L-NKPEPTCGRTPLHLAVEA---QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239
Query: 756 VLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
+ L GA + + D + +
Sbjct: 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 148 bits (377), Expect = 5e-40
Identities = 57/289 (19%), Positives = 84/289 (29%), Gaps = 55/289 (19%)
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGAN---VNVADLWKFTPLH 582
G T LH A + H + L+ A +++ + T LH
Sbjct: 2 FGYVTEDGD--TALHLAV---------IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALH 50
Query: 583 EAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARM 633
AA + L GA + + G TAL LA LL+
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC-------RVRAHTCACVLLQP--- 100
Query: 634 MGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLT 693
R T + + + +
Sbjct: 101 -RPSHPRDASDTYLTQS--------------QDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 694 SD--VVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL-LAPIHLAAD 750
+ ++ G TPLH AV K +V L GA LN+ P+HLA +
Sbjct: 146 DWRLQLEAENYD-GHTPLHVAV---IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
Query: 751 LGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
VL+ LL+ GA G+T L R+L +H A
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 148 bits (376), Expect = 8e-40
Identities = 61/355 (17%), Positives = 88/355 (24%), Gaps = 119/355 (33%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G LH A G E L AGA V + T LH A +LL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
P + + T
Sbjct: 105 ----------------------------------------PRDASDTYLTQSQD----CT 120
Query: 334 GDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEP 393
DT + + + E E+ + + E + G+T L VA +
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENY---DGHTPLHVAVIHKDA----- 171
Query: 394 PSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLD-GRHSTPLHFAAGYNRVAVVE 452
+V L L G D +N + GR TPLH A +V+E
Sbjct: 172 -EMVRL---LR--DAGAD--------------LNKPEPTCGR--TPLHLAVEAQAASVLE 209
Query: 453 YLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGG 512
LL GAD A G TPL A + L+ LL + G
Sbjct: 210 LLLKAGADP----TARMYGGRTPLGSALLRPNPILARLL-RA---------------HGA 249
Query: 513 DLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG 567
+P + S + + ++
Sbjct: 250 P------------EPEDGGDKL--SPCSSSG---------SDSDSDNRDEGDEYD 281
Score = 139 bits (354), Expect = 7e-37
Identities = 47/265 (17%), Positives = 66/265 (24%), Gaps = 73/265 (27%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G+TAL +A + + LL +C
Sbjct: 78 GHTALHLACRVRAH------TCACV---LL--QPRPSHPRDASDTYL-TQSQDCTPDTSH 125
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLS 494
+ + A + G TPLH A ++ LL
Sbjct: 126 APA-AVDSQPNPENEEEPRDEDWRLQL----EAENYDGHTPLHVAVIHKDAEMVRLL-RD 179
Query: 495 PSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARD-TAGRKSTPLHFAAGLVPLHNACS 553
G D +N + T GR TPLH A
Sbjct: 180 ---------------AGAD------------LNKPEPTCGR--TPLHLAV---------E 201
Query: 554 YGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTA 606
V E+L+K GA+ TPL A A+ L HGA D +
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Query: 607 LDLAVPCTRAVLSGDHKK--EELLE 629
+ S +E E
Sbjct: 262 CSSSG-------SDSDSDNRDEGDE 279
Score = 102 bits (257), Expect = 5e-24
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 32/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+ ++V L +GA ++ + G PLH A A V+ LLL+A A+P R T
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PL A + + AHGA
Sbjct: 228 PLGSALLRPNPILA-------------------------------RLLRAHGAPEPEDGG 256
Query: 120 EGQTPLDL 127
+ +P
Sbjct: 257 DKLSPCSS 264
Score = 100 bits (252), Expect = 2e-23
Identities = 24/144 (16%), Positives = 40/144 (27%), Gaps = 19/144 (13%)
Query: 1 YGRKDVVEYLLASGA---SIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN 57
+ + +++LL A + ++D G LH A G A V L A A +
Sbjct: 19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
Query: 58 FTPLHEAAAKGKTDVC---------IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY- 107
T LH A ++ +Q + +
Sbjct: 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138
Query: 108 ------LAHGADPFLKNQEGQTPL 125
+N +G TPL
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPL 162
Score = 97.2 bits (243), Expect = 3e-22
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
GA V VA+ T LH A +LLQ + D D
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD-- 122
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPLHLAA 1172
++ ++ + + + G TPLH+A
Sbjct: 123 -----TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH--TPLHVAV 166
Score = 92.2 bits (230), Expect = 1e-20
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
V+E LL +GA AR GG PL +A + + RLL A +P
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Query: 61 LHEAAAKGKTDV 72
+ + +D
Sbjct: 262 CSSSGSDSDSDN 273
Score = 91.1 bits (227), Expect = 4e-20
Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 17/124 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRD-GATPLDL-VREGD 1121
+ + TPLH A A++VRLL GAD +K G TPL L V
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
V +LL G + L A + N + L +P
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL--SPC 262
Query: 1169 HLAA 1172
+
Sbjct: 263 SSSG 266
Score = 84.1 bits (209), Expect = 9e-18
Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 32/125 (25%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD-NWNFTP 60
+ + A + G PLH A A++VRLL +A A+ N + TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH A V E L GADP +
Sbjct: 196 LHLAVEAQAASV------LE-------------------------LLLKAGADPTARMYG 224
Query: 121 GQTPL 125
G+TPL
Sbjct: 225 GRTPL 229
Score = 82.2 bits (204), Expect = 4e-17
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K GA+ TPL A + + RLL HGA + D +P + D
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271
Query: 1123 DVSDLL 1128
D D
Sbjct: 272 DNRDEG 277
Score = 69.9 bits (172), Expect = 6e-13
Identities = 26/104 (25%), Positives = 31/104 (29%), Gaps = 27/104 (25%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPS---KKNRDGATPLDLVREGDQDVSDLLRGNSALL 1135
T LH A + LL A +N G T L L
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL------------------- 51
Query: 1136 DAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHL 1178
AA G V+KL A + + G T LHLA R
Sbjct: 52 -AAILGEASTVEKLYAAGAGVLVAERGGH--TALHLAC-RVRAH 91
Score = 64.5 bits (158), Expect = 3e-11
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 36/111 (32%)
Query: 19 ARDDGGLHPLHNACSFGHADVVRLLLEADANP---NTRDNWNFTPLHEAAAKGKTDVCIG 75
+ G LH A H + LL A + +++ T LH AA G+
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST--- 60
Query: 76 IYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
E L A GA + + G T L
Sbjct: 61 ---VE--------------------------KLYAAGAGVLVAERGGHTAL 82
Score = 56.4 bits (137), Expect = 2e-08
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD 47
+ L A GA L P ++ S +D E D
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 42.1 bits (100), Expect = 6e-04
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHG 1100
HGA K +P + + +D ++
Sbjct: 245 RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 36.0 bits (84), Expect = 0.067
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 767 VNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
V G TALH + LL +A +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL 38
Score = 34.8 bits (81), Expect = 0.12
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLT--AD--NINCRDAQGRNSTPLHLAA 1172
G++AL A + + LL A ++ ++ G+ T LHLAA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ--TALHLAA 53
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 161 bits (411), Expect = 2e-44
Identities = 71/347 (20%), Positives = 108/347 (31%), Gaps = 92/347 (26%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
L +A Q L L L G + VN ++
Sbjct: 5 DNHLLIKAVQNEDVDLVQQL-LE---------------GGAN------------VNFQEE 36
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
G TPLH A ++ E+L++HGA+ + TP AA
Sbjct: 37 EGGW-TPLHNAV---------QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86
Query: 586 -AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEA-----ARMMGGG 637
K L GAD+N + G TA A K + L + R
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAA-------VYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 638 LHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV- 696
G T L++A +G +K L ++
Sbjct: 140 DQERLRKGGAT----------------A----------LMDAAEKGHVEVLK-ILLDEMG 172
Query: 697 --VNFKHPYTGDTPLHCAVT-SPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGH 753
VN G L A+ S +AI L+ GA +N + + P+ LA + H
Sbjct: 173 ADVNACDNM-GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 754 LDVLDTLL-RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
L ++ LL + ++N D G+TAL + +L A
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 154 bits (393), Expect = 4e-42
Identities = 83/374 (22%), Positives = 122/374 (32%), Gaps = 112/374 (29%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDL-WQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
L A ++ + L++ GANVN + +TPLH A SR ++ LLL GADP L
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 276 HNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTG 334
+ + L A G +K FL+ VN Y G
Sbjct: 68 RKKNGATP---------------------FLLAAIAGSVKLLKLFLSKGADVNECDFY-G 105
Query: 335 DTPLPGTLLIDLLSDDKEFITVAE---------EMQATVREHRDNGQSGGYTALQVAGEN 385
T + + + + ++ +E ++ + GG TAL A
Sbjct: 106 FTAF-------MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA--- 155
Query: 386 SKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGY 445
++ G + V+ LL VN D GR L A
Sbjct: 156 ---------------------AEKGHVEVLKILLDEMGADVNACDNMGR--NALIHALLS 192
Query: 446 NRV----AVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDP 501
+ A+ LL HGADV N + G TPL A +K L L L
Sbjct: 193 SDDSDVEAITHLLLDHGADV----NVRGERGKTPLILAVEKKHLGLVQRL-LEQEHIE-- 245
Query: 502 LRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
+N D+ G+ T L A ++ E
Sbjct: 246 ------------------------INDTDSDGK--TALLLAV---------ELKLKKIAE 270
Query: 562 MLVKHGANVNVADL 575
+L K GA+ + DL
Sbjct: 271 LLCKRGASTDCGDL 284
Score = 151 bits (384), Expect = 8e-41
Identities = 82/326 (25%), Positives = 118/326 (36%), Gaps = 90/326 (27%)
Query: 304 CLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAE---E 359
L++A + D V++ L VNF+ G TPL + ++ + E
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL----HNAVQMSRED---IVELLLR 60
Query: 360 MQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLL 419
A R G T +A ++ L L SKG D
Sbjct: 61 HGADP-VLRKKN---GATPFLLAAIAGSV------KLLKL---FL--SKGAD-------- 97
Query: 420 SSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN------ATDKWGF 473
VN D G T AA Y +V +++L GA+V+ + K G
Sbjct: 98 ------VNECDFYGF--TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149
Query: 474 TPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAG 533
T L +AA+KG ++ +L L A+ VNA D G
Sbjct: 150 TALMDAAEKGHVEVLKIL-LDEMGAD--------------------------VNACDNMG 182
Query: 534 RKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------A 586
R L A ++ +T +L+ HGA+VNV TPL A
Sbjct: 183 R--NALIHAL-----LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 587 KALL-QHGADINLKNTDGKTALDLAV 611
+ LL Q +IN ++DGKTAL LAV
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAV 261
Score = 143 bits (363), Expect = 5e-38
Identities = 50/197 (25%), Positives = 71/197 (36%), Gaps = 61/197 (30%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ L A V +V+ LL GA+V+ ++ + G+TPLH A Q R + LL
Sbjct: 4 EDN--HLLIKAVQNEDVDLVQQLLEGGANVNFQEE---EGGWTPLHNAVQMSREDIVELL 58
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L G D R G TP AA
Sbjct: 59 -LR---------------HGAD------------PVLRKKNGA--TPFLLAA-------- 80
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTD-- 602
G ++ ++ + GA+VN D + FT EAA K L + GA++NL+
Sbjct: 81 -IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 603 --------GKTALDLAV 611
G TAL A
Sbjct: 140 DQERLRKGGATALMDAA 156
Score = 134 bits (340), Expect = 6e-35
Identities = 65/280 (23%), Positives = 97/280 (34%), Gaps = 81/280 (28%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P A G ++ ++ + GA+VN D + FT EAA +++ L GA+
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHC-LLEACRQGDPSRVKKFLTSDVVNFKHPY 332
N K+ D R+ G L++A +G +K
Sbjct: 132 ---NLRRKTKEDQERLRK---------GGATALMDAAEKGHVEVLK-------------- 165
Query: 333 TGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQE 392
+L+D EM A V DN G AL A +S E
Sbjct: 166 ---------ILLD-------------EMGADV-NACDN---MGRNALIHALLSSDDSDVE 199
Query: 393 PPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVE 452
++ L LL G D VN R G+ TPL A + +V+
Sbjct: 200 --AITHL---LL--DHGAD--------------VNVRGERGK--TPLILAVEKKHLGLVQ 236
Query: 453 YLLAH-GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
LL ++ N TD G T L A + +++ LL
Sbjct: 237 RLLEQEHIEI----NDTDSDGKTALLLAVELKLKKIAELL 272
Score = 100 bits (252), Expect = 3e-23
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++HGA+ + TP AA G +++L L GAD ++ + G T G
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Query: 1123 DVSDLL----------------------RGNSALLDAAKKGNLGRVQKLLTAD--NINCR 1158
L G +AL+DAA+KG++ ++ LL ++N
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 1159 DAQGRNSTPLHLAA 1172
D GR L A
Sbjct: 179 DNMGR--NALIHAL 190
Score = 97.5 bits (244), Expect = 3e-22
Identities = 25/72 (34%), Positives = 32/72 (44%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
R+D+VE LL GA R G P A G +++L L A+ N D + FT
Sbjct: 49 MSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108
Query: 61 LHEAAAKGKTDV 72
EAA GK
Sbjct: 109 FMEAAVYGKVKA 120
Score = 93.3 bits (233), Expect = 7e-21
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 1066 HGANVNVADL-WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
GANVN + +TPLH A + DIV LLL+HGADP + ++GATP L G
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86
Query: 1124 VSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS----- 1165
+ L G +A ++AA G + ++ L N+N R +
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146
Query: 1166 ---TPLHLAAGEKRHL 1178
T L AA EK H+
Sbjct: 147 GGATALMDAA-EKGHV 161
Score = 92.1 bits (230), Expect = 2e-20
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 34/127 (26%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
D+V+ LL GA+++ ++ +GG PLHNA D+V LLL A+P R T
Sbjct: 15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKN 118
P AA G + + + GAD +
Sbjct: 75 PFLLAAIAGSVKL------LK--------------------------LFLSKGADVNECD 102
Query: 119 QEGQTPL 125
G T
Sbjct: 103 FYGFTAF 109
Score = 85.6 bits (213), Expect = 3e-18
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 33/150 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN--- 57
G +++ L+ GA ++ D G A +G ++ L + AN N R
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141
Query: 58 -------FTPLHEAAAKGKTDVC---IGIYFAEHSSKSNQYVYGIGGGTGCPMH------ 101
T L +AA KG +V + A+ ++ N G +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM------GRN--ALIHALLSS 193
Query: 102 -----KDRSCYL-AHGADPFLKNQEGQTPL 125
+ + L HGAD ++ + G+TPL
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 83.3 bits (207), Expect = 2e-17
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 33/145 (22%)
Query: 1064 VKHGANVNVADLWK----------FTPLHEAAAKGKADIVRLLLQH-GADPSKKNRDGAT 1112
K GANVN+ K T L +AA KG +++++LL GAD + + G
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 1113 PLDLV-----REGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-- 1153
L + ++ LL RG + L+ A +K +LG VQ+LL +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 1154 NINCRDAQGRNSTPLHLAAGEKRHL 1178
IN D+ G+ T L LA E +
Sbjct: 245 EINDTDSDGK--TALLLAV-ELKLK 266
Score = 82.9 bits (206), Expect = 3e-17
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD-ANPNTRDNWNFTP 60
+ + LL GA ++ R + G PL A H +V+ LLE + N D+ T
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256
Query: 61 LHEAAAKGKTDV 72
L A +
Sbjct: 257 LLLAVELKLKKI 268
Score = 71.3 bits (176), Expect = 2e-13
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 22/98 (22%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLL-QHGADPSKKNRDGATPLDLVREGDQ 1122
+ HGA+VNV TPL A K +V+ LL Q + + + DG T L L
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL------ 259
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRD 1159
A + + L + +C D
Sbjct: 260 --------------AVELKLKKIAELLCKRGASTDCGD 283
Score = 67.9 bits (167), Expect = 2e-12
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 34/104 (32%)
Query: 24 GLHPLHNACSFGHADVVRLLLEADANPNTRDN-WNFTPLHEAAAKGKTDVCIGIYFAEHS 82
H L A D+V+ LLE AN N ++ +TPLH A + D+ E
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI------VE-- 56
Query: 83 SKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L HGADP L+ + G TP
Sbjct: 57 ------------------------LLLRHGADPVLRKKNGATPF 76
Score = 64.0 bits (157), Expect = 5e-11
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 1 YGRKDVVEYLLAS-GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+V+ LL I+ D G L A + LL + A+ + D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 60.9 bits (149), Expect = 5e-10
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLI-RKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G TPL AV K +V+ L+ ++ +N+ + + + LA +L + + L +
Sbjct: 219 GKTPLILAV---EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 764 GAKVNLVDVL 773
GA + D++
Sbjct: 276 GASTDCGDLV 285
Score = 42.5 bits (101), Expect = 5e-04
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
N L+ A + ++ VQ+LL N+N ++ +G TPLH A
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAV 47
Score = 37.1 bits (87), Expect = 0.030
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADP 273
L +A +++ LL GA+
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANV 31
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 157 bits (399), Expect = 3e-44
Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 52/210 (24%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ + + G++ + L ++VN D G TPL +A+ + + V +LL GAD
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGF--TPLIWASAFGEIETVRFLLEWGADP- 62
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ K + L A+ G T + LL L + D
Sbjct: 63 ---HILAKERESALSLASTGGYTDIVGLL-LE---------------RDVD--------- 94
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+N D G TPL +A H + E L+ GA++ +TP+
Sbjct: 95 ---INIYDWNGG--TPLLYAV---------RGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 583 EAA-------AKALLQHGADINLKNTDGKT 605
A + + H + N
Sbjct: 141 LAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 146 bits (372), Expect = 1e-40
Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 49/183 (26%)
Query: 436 STPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSP 495
S +H A + ++ L G + N D+ GFTPL A+ G + L L
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDN---LVNKPDERGFTPLIWASAFGEIETVRFL-LE- 57
Query: 496 SAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYG 555
G D + + L A+ + G
Sbjct: 58 --------------WGAD------------PHILAKERE--SALSLAS---------TGG 80
Query: 556 HYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALD 608
+ ++ +L++ ++N+ D TPL A +ALL GAD+ + G T +D
Sbjct: 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 609 LAV 611
LAV
Sbjct: 141 LAV 143
Score = 117 bits (296), Expect = 2e-30
Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 56/217 (25%)
Query: 374 GGYTALQVAGEN-----SKKLLQEPPSVVDLESQ-----LLEASKGGDMTVVTRLLSSCP 423
G ++ K+ L++ ++V+ + L+ AS G++ V LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
+ + + L A+ +V LL D+ N D G TPL A +
Sbjct: 61 D-PHILAKERE--SALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVRGN 113
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
+ L L+ +G D + +G TP+ A
Sbjct: 114 HVKCVEAL-LA---------------RGAD------------LTTEADSGY--TPMDLAV 143
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
+ G+ +V +++ H + ++L P
Sbjct: 144 ---------ALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 99.8 bits (250), Expect = 3e-24
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + V +LL GA H L A + G+ D+V LLLE D + N D TP
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L A + + LA GAD +
Sbjct: 106 LLYAVRGNHVKCV-------------EAL------------------LARGADLTTEADS 134
Query: 121 GQTPLDL 127
G TP+DL
Sbjct: 135 GYTPMDL 141
Score = 98.3 bits (246), Expect = 1e-23
Identities = 28/124 (22%), Positives = 35/124 (28%), Gaps = 31/124 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D+V LL I+ D G PL A H V LL A+ T + +TP
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
+ A A G V Q + H F N
Sbjct: 139 MDLAVALGYRKVQ-------------QVI------------------ENHILKLFQSNLV 167
Query: 121 GQTP 124
P
Sbjct: 168 PADP 171
Score = 92.5 bits (231), Expect = 1e-21
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 1064 VKHGAN-VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
++ G N VN D FTPL A+A G+ + VR LL+ GADP ++ + L L G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
D+ LL G + LL A + ++ V+ LL ++ G TP+
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY--TPM 139
Query: 1169 HLAA 1172
LA
Sbjct: 140 DLAV 143
Score = 91.3 bits (228), Expect = 3e-21
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 676 LLEACRQGDPSRVKKFLTS--DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
+ + QG+ ++K+ L ++VN G TPL A V L+ GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWAS---AFGEIETVRFLLEWGAD 61
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+ KE + + LA+ G+ D++ LL +N+ D G T L R + + V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 794 LSHNAD 799
L+ AD
Sbjct: 122 LARGAD 127
Score = 83.2 bits (207), Expect = 2e-18
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
++ L A T Y IV L+ + +N + P+ A H+ ++ LL G
Sbjct: 69 RESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A + G T + + +V+ +H
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160
Score = 81.3 bits (202), Expect = 8e-18
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRL 763
+H ++ +RKG +L N+ ++ P+ A+ G ++ + LL
Sbjct: 2 DSLSIHQLAAQ---GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA +++ ++AL + T V +LL + D
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94
Score = 80.9 bits (201), Expect = 1e-17
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGAD-PSKKNRDGATPLDL-VREGDQDVSDLL-------- 1128
+H+ AA+G+ D ++ L+ G + +K + G TPL G+ + L
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 1129 ----RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
SAL A+ G V LL D +IN D G TPL A
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG--TPLLYAVRG 112
Score = 80.5 bits (200), Expect = 1e-17
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 23/105 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++ ++N+ D TPL A V LL GAD + + G TP+DL
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL------- 141
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
A G Q + + + P
Sbjct: 142 -------------AVALGYRKVQQVIENHILKLFQSNLVPA--DP 171
Score = 79.8 bits (198), Expect = 3e-17
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L A + G+ ++ +L++ ++N D TPL A + ++ LL+ GAD
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 274 TLHNCHSKSAIDVA 287
T + +D+A
Sbjct: 129 TTEADSGYTPMDLA 142
Score = 77.8 bits (193), Expect = 1e-16
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PL A ++G E L++ GA+ + + + + L A++ ++ LLL D
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Score = 77.1 bits (191), Expect = 2e-16
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PL A H + E L+ GA++ +TP+ A + +V ++ +
Sbjct: 105 PLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 73.6 bits (182), Expect = 4e-15
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGAN-VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+H + G + + ++ G N VN D FTPL A++ +E LL GADP
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Score = 66.3 bits (163), Expect = 1e-12
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 32/104 (30%)
Query: 23 GGLHPLHNACSFGHADVVRLLLEADAN-PNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEH 81
G +H + G D ++ L N N D FTPL A+A G+ +
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETV-------- 52
Query: 82 SSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
+++ L GADP + +E ++ L
Sbjct: 53 -----RFL------------------LEWGADPHILAKERESAL 73
Score = 65.5 bits (161), Expect = 2e-12
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL AV VE+L+ +GA L + P+ LA LG+ V +
Sbjct: 102 GGTPLLYAV---RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Query: 765 AKVNLVDVLGQT 776
K+ +++
Sbjct: 159 LKLFQSNLVPAD 170
Score = 48.6 bits (117), Expect = 2e-06
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTP 250
P+ A + G+ +V +++ + +L P
Sbjct: 138 PMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 46.6 bits (112), Expect = 8e-06
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLAAGEKRHL 1178
+ ++ A +G L ++++ L + +N D +G TPL A+ +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGF--TPLIWAS-AFGEI 49
Score = 36.2 bits (85), Expect = 0.024
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGAD 272
+H+ A++ L+ L +G +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDN 27
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 154 bits (393), Expect = 2e-43
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 52/205 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ + G+ V L + + +N D G +PLH+A R AVVE L+ GA +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGRSAVVEMLIMRGARI- 65
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N ++ TPLH AA G + L L D
Sbjct: 66 ---NVMNRGDDTPLHLAASHGHRDIVQKL-LQ---------------YKAD--------- 97
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+NA + G PLH+ AC +G +V E LV +GA V++ + + P+
Sbjct: 98 ---INAVNEHGN--VPLHY---------ACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143
Query: 583 EAA-------AKALLQHGADINLKN 600
+A + + G ++N
Sbjct: 144 KAKAPLRELLRERAEKMGQNLNRIP 168
Score = 150 bits (381), Expect = 1e-41
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 53/187 (28%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGA-DVHSKDNATDKWGFTPLHEAAQKGRTQLSAL 490
+ + V L + D+ N D GF+PLH A ++GR+ + +
Sbjct: 4 EFM--DDIFTQCREGNAVAVRLWLDNTENDL----NQGDDHGFSPLHWACREGRSAVVEM 57
Query: 491 LPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHN 550
L + +G +N + TPLH AA
Sbjct: 58 L-IM---------------RGAR------------INVMNRGDD--TPLHLAA------- 80
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDG 603
S+GH ++ + L+++ A++N + PLH A A+ L+ +GA +++ N G
Sbjct: 81 --SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 604 KTALDLA 610
+ +D A
Sbjct: 139 EMPVDKA 145
Score = 113 bits (285), Expect = 6e-29
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
GR VVE L+ GA I+ + G PLH A S GH D+V+ LL+ A+ N + P
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH A G+ V +A+GA + N+
Sbjct: 109 LHYACFWGQDQVAE-------------------------------DLVANGALVSICNKY 137
Query: 121 GQTPLDL 127
G+ P+D
Sbjct: 138 GEMPVDK 144
Score = 97.5 bits (244), Expect = 2e-23
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 676 LLEACRQGDPSRVKKFLTS--DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
+ CR+G+ V+ +L + + +N + G +PLH A R A+VE LI +GA
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACRE---GRSAVVEMLIMRGAR 64
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
+N N+ P+HLAA GH D++ LL+ A +N V+ G LH + Q L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 794 LSHNAD 799
+++ A
Sbjct: 125 VANGAL 130
Score = 91.7 bits (229), Expect = 3e-21
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G +D+V+ LL A I+A ++ G PLH AC +G V L+ A + + + P
Sbjct: 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Query: 61 LHEAAAKGKTDV 72
+ +A A + +
Sbjct: 142 VDKAKAPLRELL 153
Score = 90.2 bits (225), Expect = 7e-21
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 1064 VKHGAN-VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ + N +N D F+PLH A +G++ +V +L+ GA + NR TPL L G
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
+D+ L GN L A G + L+ ++ + G P+
Sbjct: 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE--MPV 142
Query: 1169 HLAAGE 1174
A
Sbjct: 143 DKAKAP 148
Score = 89.0 bits (222), Expect = 2e-20
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A S+GH ++ + L++ A++NA++ PLH A + +V L++ GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Query: 274 TLHNCHSKSAIDVA 287
++ N + + +D A
Sbjct: 132 SICNKYGEMPVDKA 145
Score = 88.3 bits (220), Expect = 4e-20
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
DTPLH A + + IV+ L++ A +N N+ P+H A G V + L+ G
Sbjct: 72 DDTPLHLAASH---GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A V++ + G+ + + + +
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163
Score = 84.8 bits (211), Expect = 6e-19
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+++ A++N + PLH A G+ + L+ +GA S N+ G P+D +
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151
Query: 1123 DVSDLLRGNSA------LLDAAKKGNL 1143
+ + D KG
Sbjct: 152 LLRERAEKMGQNLNRIPYKDTFWKGTT 178
Score = 81.3 bits (202), Expect = 9e-18
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH AC G V EMLI GA +N M+ TPLH AAS ++ LL AD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Score = 80.2 bits (199), Expect = 2e-17
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
+ V + + LN+ + +P+H A G V++ L+
Sbjct: 5 FMDDIFTQCRE---GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA++N+++ T LH A V+ LL + AD
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Score = 77.1 bits (191), Expect = 3e-16
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G VPLH AC +G +V E L+ GA V+ + + P+ +A + R + G +
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Query: 274 TLHNCHSKS 282
Sbjct: 165 NRIPYKDTF 173
Score = 74.4 bits (184), Expect = 2e-15
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGA-DPSKKNRDGATPLDL-VREGDQDVSDLL------- 1128
+ +G A VRL L + D ++ + G +PL REG V ++L
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 1129 -----RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
++ L AA G+ VQKLL +IN + G PLH A
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN--VPLHYAC 113
Score = 72.9 bits (180), Expect = 9e-15
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G+ V E L+A+GA + + G P+ A + + + N N P
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IP 168
Query: 61 LHEAAAKGKT 70
+ KG T
Sbjct: 169 YKDTFWKGTT 178
Score = 72.5 bits (179), Expect = 1e-14
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGAN-VNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+ + C G+ + + N +N D F+PLH A + R V +L+ GA
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Score = 64.8 bits (159), Expect = 5e-12
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+ PLH A + + + E L+ GA ++ NK P+ A + + ++G
Sbjct: 105 GNVPLHYAC---FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
Query: 765 AKVNLVD 771
+N +
Sbjct: 162 QNLNRIP 168
Score = 64.8 bits (159), Expect = 6e-12
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L A G V L++ + +V+ + G P+ A R + E G +
Sbjct: 109 LHYACFWGQDQVAEDLVA---NGALVSICNKYGE--MPVDKAKAPLRELLRERAEKMGQN 163
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQ 486
+ N P + KG T+
Sbjct: 164 L----NRI------PYKDTFWKGTTR 179
Score = 62.4 bits (153), Expect = 3e-11
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 34/107 (31%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADAN-PNTRDNWNFTPLHEAAAKGKTDVCIGIYFA 79
+ + C G+A VRL L+ N N D+ F+PLH A +G++ V
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV------V 55
Query: 80 EHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
E L GA + N+ TPL
Sbjct: 56 E--------------------------MLIMRGARINVMNRGDDTPL 76
Score = 49.7 bits (120), Expect = 7e-07
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGA-KVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
+ E + I G+ + L +N D G + LH R+ ++ V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 797 NAD 799
A
Sbjct: 62 GAR 64
Score = 47.4 bits (114), Expect = 5e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 1130 GNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPLHLAAGE 1174
+ ++GN V+ L T +++N D G +PLH A E
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACRE 49
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 153 bits (390), Expect = 4e-43
Identities = 74/187 (39%), Positives = 82/187 (43%), Gaps = 53/187 (28%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLL-AHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSAL 490
+ L AA V V+ L + + TPLH AA R +
Sbjct: 7 EAD--RQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 491 LPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHN 550
L L G D V+A+D G VPLHN
Sbjct: 61 L-LQ---------------HGAD------------VHAKDKGGL-----------VPLHN 81
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDG 603
ACSYGHYEV E+LVKHGA VNVADLWKFTPLHEAA K LLQHGAD KN DG
Sbjct: 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Query: 604 KTALDLA 610
T LDL
Sbjct: 142 NTPLDLV 148
Score = 148 bits (376), Expect = 3e-41
Identities = 74/203 (36%), Positives = 96/203 (47%), Gaps = 51/203 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH 457
+ + QLLEA+K GD+ V +L + VNCRD++GR STPLHFAAGYNRV+VVEYLL H
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
GADV +A DK G PLH A G +++ LL + G
Sbjct: 65 GADV----HAKDKGGLVPLHNACSYGHYEVAELL-VK---------------HGAV---- 100
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
VN D TPLH AA + G YE+ ++L++HGA+ +
Sbjct: 101 --------VNVADLWKF--TPLHEAA---------AKGKYEICKLLLQHGADPTKKNRDG 141
Query: 578 FTPLHEAA------AKALLQHGA 594
TPL L A
Sbjct: 142 NTPLDLVKDGDTDIQDLLRGDAA 164
Score = 110 bits (278), Expect = 5e-28
Identities = 49/161 (30%), Positives = 65/161 (40%), Gaps = 52/161 (32%)
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
GA +S+ L EAA+ G + V
Sbjct: 1 GAMGNSE-------ADRQLLEAAKAGDVET-----------------------------V 24
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
KKL Q+VN RD GR+STPLHFAA Y V E L++HGA+V+ D
Sbjct: 25 KKLCTVQSVNCRDIEGRQSTPLHFAA---------GYNRVSVVEYLLQHGADVHAKDKGG 75
Query: 578 FTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
PLH A A+ L++HGA +N+ + T L A
Sbjct: 76 LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Score = 109 bits (274), Expect = 2e-27
Identities = 59/127 (46%), Positives = 69/127 (54%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R VVEYLL GA +HA+D GGL PLHNACS+GH +V LL++ A N D W FTP
Sbjct: 52 YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 111
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LHEAAAKGK ++C L HGADP KN++
Sbjct: 112 LHEAAAKGKYEIC-------------------------------KLLLQHGADPTKKNRD 140
Query: 121 GQTPLDL 127
G TPLDL
Sbjct: 141 GNTPLDL 147
Score = 99.0 bits (248), Expect = 5e-24
Identities = 57/71 (80%), Positives = 65/71 (91%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
VKHGA VNVADLWKFTPLHEAAAKGK +I +LLLQHGADP+KKNRDG TPLDLV++GD D
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 154
Query: 1124 VSDLLRGNSAL 1134
+ DLLRG++AL
Sbjct: 155 IQDLLRGDAAL 165
Score = 94.4 bits (236), Expect = 2e-22
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
GLVPLHNACSYGH+EV E+L+K GA VN DLW+FTPLHEAA+K + E+C LLL GADP
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 274 TLHNCHSKSAIDVA 287
T N + +D+
Sbjct: 135 TKKNRDGNTPLDLV 148
Score = 92.5 bits (231), Expect = 1e-21
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHP-YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA + GD VKK T VN + TPLH A R ++VE L++ GA +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY---NRVSVVEYLLQHGADV 68
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ K+K L P+H A GH +V + L++ GA VN+ D+ T LH A K + ++LL
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 795 SHNAD 799
H AD
Sbjct: 129 QHGAD 133
Score = 88.2 bits (220), Expect = 2e-20
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
N + + TPLH AA + +V LLQHGAD K++ G PL G +
Sbjct: 30 VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89
Query: 1124 VSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHL 1170
V++LL + L +AA KG + LL + ++ G TPL L
Sbjct: 90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN--TPLDL 147
Query: 1171 AA 1172
Sbjct: 148 VK 149
Score = 82.4 bits (205), Expect = 3e-18
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG +V E L+ GA ++ D PLH A + G ++ +LLL+ A+P ++ TP
Sbjct: 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144
Query: 61 LHEAAAKGKTDV 72
L G TD+
Sbjct: 145 LD-LVKDGDTDI 155
Score = 81.3 bits (202), Expect = 7e-18
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLI-RKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
D L A + V+ L + + + P+H AA + V++ LL+
Sbjct: 8 ADRQLLEAAKA---GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA V+ D G LH + +L+ H A
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Score = 81.3 bits (202), Expect = 7e-18
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G PLH A + E L++ GA +N + P+H AA G ++ LL+ G
Sbjct: 75 GLVPLHNAC---SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
A + G T L +D T +L A
Sbjct: 132 ADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164
Score = 76.7 bits (190), Expect = 3e-16
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A Y V E L++ GA+V+A D PLH A S EV LL+ GA
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Score = 72.4 bits (179), Expect = 9e-15
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKA-GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G E + L N ++ Q TPLH AA +R+ V LL GAD
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Score = 69.0 bits (170), Expect = 1e-13
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A + G +E+ ++L++ GA+ + TPL ++ LL + A
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164
Score = 61.3 bits (150), Expect = 6e-11
Identities = 26/114 (22%), Positives = 33/114 (28%), Gaps = 37/114 (32%)
Query: 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEA-DANPNTRDNWNFTPLHEAAAKGKTDV 72
GA + L A G + V+ L N + TPLH AA + V
Sbjct: 1 GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 73 CIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
E YL HGAD K++ G PL
Sbjct: 58 ------VE--------------------------YLLQHGADVHAKDKGGLVPL 79
Score = 53.5 bits (130), Expect = 3e-08
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 731 GAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL-GAKVNLVDVLGQTALHRTARDDKTQA 789
GA N + + AA G ++ + L + ++ T LH A ++
Sbjct: 1 GAMGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 790 VRVLLSHNAD 799
V LL H AD
Sbjct: 58 VEYLLQHGAD 67
Score = 50.1 bits (121), Expect = 5e-07
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G+ ++ + LL GA ++ G PL G D+ LL A
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 48.9 bits (118), Expect = 1e-06
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGE 1174
+ LL+AAK G++ V+KL T ++NCRD +GR STPLH AAG
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY 52
Score = 38.5 bits (91), Expect = 0.004
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
GA N+ L EAA +E L + +
Sbjct: 1 GAMGNSEA---DRQLLEAAKAGDVETVKKLCTVQS 32
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 152 bits (386), Expect = 1e-42
Identities = 67/195 (34%), Positives = 90/195 (46%), Gaps = 52/195 (26%)
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
H + D L AA R V L+A+GADV NA D G+TPLH AA G
Sbjct: 5 HHHHHHGSDLG--KKLLEAARAGRDDEVRILMANGADV----NAEDASGWTPLHLAAFNG 58
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
++ +L L G D VNA D AG TPL AA
Sbjct: 59 HLEIVEVL-LK---------------NGAD------------VNAVDHAGM--TPLRLAA 88
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
+GH E+ E+L+K+GA+VN D+ TPLH AA + LL++GAD+
Sbjct: 89 ---------LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 597 NLKNTDGKTALDLAV 611
N ++ GKTA D+++
Sbjct: 140 NAQDKFGKTAFDISI 154
Score = 126 bits (320), Expect = 1e-33
Identities = 64/199 (32%), Positives = 85/199 (42%), Gaps = 57/199 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
LLEA++ G V L++ + VN D G TPLH AA + +VE LL +GAD
Sbjct: 18 LLEAARAGRDDEVRILMA---NGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
V NA D G TPL AA G ++ +L L G D
Sbjct: 73 V----NAVDHAGMTPLRLAALFGHLEIVEVL-LK---------------NGAD------- 105
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
VNA D G TPLH AA +GH E+ E+L+K+GA+VN D + T
Sbjct: 106 -----VNANDMEGH--TPLHLAA---------MFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 581 LHEAA-------AKALLQH 592
+ A+ L +
Sbjct: 150 FDISIDNGNEDLAEILQKL 168
Score = 92.4 bits (231), Expect = 1e-21
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 33/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
GR D V L+A+GA ++A D G PLH A GH ++V +LL+ A+ N D+ TP
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
L AA G ++ E L +GAD +
Sbjct: 84 LRLAALFGHLEI------VE--------------------------VLLKNGADVNANDM 111
Query: 120 EGQTPL 125
EG TPL
Sbjct: 112 EGHTPL 117
Score = 92.4 bits (231), Expect = 1e-21
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++VE LL +GA ++A D G+ PL A FGH ++V +LL+ A+ N D TP
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
LH AA G ++ E L +GAD +++
Sbjct: 117 LHLAAMFGHLEI------VE--------------------------VLLKNGADVNAQDK 144
Query: 120 EGQTPLDL 127
G+T D+
Sbjct: 145 FGKTAFDI 152
Score = 92.0 bits (230), Expect = 1e-21
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ +GA+VN D +TPLH AA G +IV +LL++GAD + + G TPL L G
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL 93
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
++ ++L G++ L AA G+L V+ LL ++N +D G+ T
Sbjct: 94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK--TAFD 151
Query: 1170 LAA 1172
++
Sbjct: 152 ISI 154
Score = 89.3 bits (223), Expect = 1e-20
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G PLH A FGH ++V +LL+ A+ N +D + T
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 61 LHEAAAKGKTDV 72
+ G D+
Sbjct: 150 FDISIDNGNEDL 161
Score = 87.8 bits (219), Expect = 4e-20
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+ H L A + R V L+ GA +N ++ P+HLAA GHL++
Sbjct: 6 HHHHHGSDLGKKLLEAARA---GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ LL+ GA VN VD G T L A + V VLL + AD
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Score = 86.6 bits (216), Expect = 1e-19
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 23/125 (18%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREG 1120
H+ HG+++ L EAA G+ D VR+L+ +GAD + ++ G TPL L G
Sbjct: 6 HHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 1121 DQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
++ ++L G + L AA G+L V+ LL ++N D +G TP
Sbjct: 59 HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH--TP 116
Query: 1168 LHLAA 1172
LHLAA
Sbjct: 117 LHLAA 121
Score = 85.9 bits (214), Expect = 2e-19
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + IVE L++ GA +N + + P+ LAA GHL++++ LL+ G
Sbjct: 47 GWTPLHLAA---FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN D+ G T LH A + V VLL + AD
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 85.1 bits (212), Expect = 4e-19
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL A IVE L++ GA +N + E P+HLAA GHL++++ LL+ G
Sbjct: 80 GMTPLRLAA---LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
A VN D G+TA + + +L N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 78.2 bits (194), Expect = 9e-17
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL A +GH E+ E+L+K GA+VNA D+ TPLH AA LE+ +LL GAD
Sbjct: 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 77.4 bits (192), Expect = 2e-16
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH E+ E+L+K GA+VNA+D TPL AA LE+ +LL GAD
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Score = 77.0 bits (191), Expect = 2e-16
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D +TPLH AA LE+ +LL GAD
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Score = 76.2 bits (189), Expect = 4e-16
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D+ TPLH AA G +IV +LL++GAD + +++ G T D+ + G++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 1123 DVSDLL 1128
D++++L
Sbjct: 160 DLAEIL 165
Score = 68.5 bits (169), Expect = 2e-13
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
PLH A +GH E+ E+L+K GA+VNA D + T + ++ +L
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 65.1 bits (160), Expect = 3e-12
Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 34/114 (29%)
Query: 14 GASIHARDDG-GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
G+ H L A G D VR+L+ A+ N D +TPLH AA G ++
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 73 CIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
E L +GAD + G TPL
Sbjct: 63 ------VE--------------------------VLLKNGADVNAVDHAGMTPL 84
Score = 62.8 bits (154), Expect = 2e-11
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 730 KGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQ 788
+G+H + +L + AA G D + L+ GA VN D G T LH A + +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 789 AVRVLLSHNAD 799
V VLL + AD
Sbjct: 62 IVEVLLKNGAD 72
Score = 57.0 bits (139), Expect = 2e-09
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD 47
+G ++VE LL +GA ++A+D G + G+ D+ +L + +
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 48.9 bits (118), Expect = 1e-06
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
+K+GA+VN D + T + G D+ +L +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 41.2 bits (98), Expect = 4e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 231 EMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G+++ L EAA R + +L++ GAD
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGAD 39
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 152 bits (386), Expect = 2e-42
Identities = 44/186 (23%), Positives = 65/186 (34%), Gaps = 50/186 (26%)
Query: 433 GRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLP 492
G +S +H A + + + + N TD+ GFTPL AA G+ + L
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVI----NHTDEEGFTPLMWAAAHGQIAVVEFL- 55
Query: 493 LSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNAC 552
L G D + L A
Sbjct: 56 LQ---------------NGAD------------PQLLGKGRE--SALSLAC--------- 77
Query: 553 SYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKT 605
S G+ ++ +ML+ G +VN D TPL A K LL+ GAD ++ G
Sbjct: 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 137
Query: 606 ALDLAV 611
++DLAV
Sbjct: 138 SMDLAV 143
Score = 144 bits (367), Expect = 6e-40
Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 53/207 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ + + G+M + + I N D +G TPL +AA + ++AVVE+LL +GAD
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVI-NHTDEEGF--TPLMWAAAHGQIAVVEFLLQNGADP- 62
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
K + L A KG T + +L L G D
Sbjct: 63 ---QLLGKGRESALSLACSKGYTDIVKML-LD---------------CGVD--------- 94
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
VN D G TPL +A H + +ML++ GA+ + + +
Sbjct: 95 ---VNEYDWNGG--TPLLYAV---------HGNHVKCVKMLLESGADPTIETDSGYNSMD 140
Query: 583 EAA-------AKALLQHGADINLKNTD 602
A + + H + +
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 99.8 bits (250), Expect = 3e-24
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G+ VVE+LL +GA G L ACS G+ D+V++LL+ + N D TP
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L A + + L GADP ++
Sbjct: 106 LLYAVHGNHVKCV-------------KML------------------LESGADPTIETDS 134
Query: 121 GQTPLDLTVAE---DVRSLLQDAMA 142
G +DL VA V+ +++ +
Sbjct: 135 GYNSMDLAVALGYRSVQQVIESHLL 159
Score = 96.3 bits (241), Expect = 4e-23
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ +N D FTPL AAA G+ +V LLQ+GADP + + L L +G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
D+ +L G + LL A ++ V+ LL + + G +
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY--NSMD 140
Query: 1170 LAA 1172
LA
Sbjct: 141 LAV 143
Score = 89.4 bits (223), Expect = 1e-20
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
+ + QG+ + + + +N G TPL A + A+VE L++ GA
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEE-GFTPLMWAA---AHGQIAVVEFLLQNGADP 62
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
K + + LA G+ D++ LL G VN D G T L + + V++LL
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 795 SHNAD 799
AD
Sbjct: 123 ESGAD 127
Score = 87.1 bits (217), Expect = 6e-20
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+H + + I + +N ++E P+ AA G + V++ LL+ G
Sbjct: 3 NSLSVHQLAAQ---GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A L+ ++AL T V++LL D
Sbjct: 60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Score = 85.1 bits (212), Expect = 3e-19
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
++ L A + IV+ L+ G +NE + P+ A H+ + LL G
Sbjct: 69 RESALSLACSK---GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A + G ++ +V+ SH
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160
Score = 83.6 bits (208), Expect = 1e-18
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL--------- 1128
+H+ AA+G+ + ++ + + +G TPL G V + L
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 1129 ---RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
SAL A KG V+ LL ++N D G TPL A
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG--TPLLYAV 110
Score = 80.9 bits (201), Expect = 9e-18
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L ACS G+ ++ +ML+ G +VN D TPL A + ++ +LL GADP
Sbjct: 69 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 274 TLHNCHSKSAIDVA 287
T+ +++D+A
Sbjct: 129 TIETDSGYNSMDLA 142
Score = 80.1 bits (199), Expect = 2e-17
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ G +VN D TPL A V++LL+ GADP+ + G +DL V G +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 1123 DVSDLLRGNSALLDAAKK 1140
V ++ + L K
Sbjct: 149 SVQQVIESHLLKLLQNIK 166
Score = 78.6 bits (195), Expect = 6e-17
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PL A ++G V E L++ GA+ + + + L A SK ++ +LL G D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Score = 78.2 bits (194), Expect = 9e-17
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+H + G I+ +N D FTPL AA+ ++ V LL GADP
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Score = 75.1 bits (186), Expect = 9e-16
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL A H + +ML+++GA+ + + A + V ++ S
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160
Score = 69.7 bits (172), Expect = 8e-14
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 33/100 (33%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
+H + G + +E + N D FTPL AAA G+ V E
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAV------VE------ 53
Query: 87 QYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+L +GADP L + ++ L
Sbjct: 54 --------------------FLLQNGADPQLLGKGRESAL 73
Score = 69.3 bits (171), Expect = 9e-14
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
V+ LL SGA D G + + A + G+ V +++
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 62.0 bits (152), Expect = 3e-11
Identities = 6/46 (13%), Positives = 19/46 (41%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRD 1109
++ GA+ + + + A A G + +++ H + ++
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 60.5 bits (148), Expect = 1e-10
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL AV + V+ L+ GA + + LA LG+ V +
Sbjct: 102 GGTPLLYAV---HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Query: 765 AKVN 768
K+
Sbjct: 159 LKLL 162
Score = 44.7 bits (107), Expect = 3e-05
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMD 244
+ A + G+ V +++ +
Sbjct: 138 SMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 42.0 bits (100), Expect = 2e-04
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 1129 RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
+ ++ A +G + + + + IN D +G TPL AA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGF--TPLMWAA 44
Score = 37.0 bits (87), Expect = 0.014
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGAD 272
+H+ A++ + + + +
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENV 28
Score = 36.6 bits (86), Expect = 0.017
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKE 740
G + AV +++ + + L + KE
Sbjct: 135 GYNSMDLAVAL---GYRSVQQVIESHLLKLLQNIKE 167
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 158 bits (403), Expect = 2e-42
Identities = 72/422 (17%), Positives = 113/422 (26%), Gaps = 118/422 (27%)
Query: 209 QAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
Q++ L A G+ + N + + P + + +
Sbjct: 32 QSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82
Query: 269 EGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNF 328
PT S + G + +T + VN
Sbjct: 83 NLQIPTEPEPESPIKLHTE------------AAGS--YAIT---------EPITRESVNI 119
Query: 329 KHPYTGDTPL--------PGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQ 380
P T L ++ + KE I A V D T L
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI----AAGADV-NAMDCD---ENTPLM 171
Query: 381 VAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLH 440
+A ++ +V L+ G D + R + LH
Sbjct: 172 LAVLARRR------RLVAY---LM--KAGAD--------------PTIYNKSER--SALH 204
Query: 441 FAAGYNRVAVVEYLLAH---GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSA 497
AA ++ Y+L D+ D+ G T L A A L
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDI----EELDRNGMTALMIVAHNEGRDQVASAKL---- 256
Query: 498 ANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHY 557
L E KG + ++ GR T LH+AA +
Sbjct: 257 -------LVE--KGAKV----DYDGAARKDSEKYKGR--TALHYAA---------QVSNM 292
Query: 558 EVTEMLVKH-GANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDL 609
+ + LV G+N + D TP+ AA L+Q GA + + TA L
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352
Query: 610 AV 611
A
Sbjct: 353 AQ 354
Score = 138 bits (350), Expect = 2e-35
Identities = 41/269 (15%), Positives = 76/269 (28%), Gaps = 61/269 (22%)
Query: 359 EMQATVREHRDN-GQSGGYTALQVAGENSKKLLQEPPSVVDLESQ-----LLEASKGGDM 412
M+ + +++ + +L A + + + G+
Sbjct: 20 PMENEEKNRKNHQSITSSQHSLLEASYD-----GYIKRQRNELQHYSLYPNPQGYGNGND 74
Query: 413 TVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWG 472
+ + I + + LH A A+ E + ++ +
Sbjct: 75 FLG-DFNHTNLQIPTEPEPESP--IKLHTEA-AGSYAITEPITRESVNIIDPRH-----N 125
Query: 473 FTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTA 532
T LH A + S L + + G D VNA D
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAK--------ECIAAGAD------------VNAMDCD 165
Query: 533 GRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------- 585
TPL A + L+K GA+ + + + + LH+AA
Sbjct: 166 EN--TPLMLAV---------LARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 214
Query: 586 AKALLQH---GADINLKNTDGKTALDLAV 611
+L DI + +G TAL +
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVA 243
Score = 123 bits (311), Expect = 2e-30
Identities = 67/298 (22%), Positives = 103/298 (34%), Gaps = 83/298 (27%)
Query: 217 PLHNACSYGHFEVTEMLI--------KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
LH S E +E LI AGA+VNAMD + TPL A R + + L+
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187
Query: 269 EGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV--- 325
GADPT++N +SA L +A D + ++ +
Sbjct: 188 AGADPTIYNKSERSA---------------------LHQAAANRDF-GMMVYMLNSTKLK 225
Query: 326 --VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAE----------EMQATVREHRDNGQS 373
+ G T L+I ++ ++ + A+ A ++
Sbjct: 226 GDIEELDRN-GMTA----LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY--- 277
Query: 374 GGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDG 433
G TAL A + S +V + L KG + + +D DG
Sbjct: 278 KGRTALHYAAQVSNM------PIV----KYLVGEKGSN--------------KDKQDEDG 313
Query: 434 RHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ TP+ AA R+ VV YL+ GA V A D T A + +
Sbjct: 314 K--TPIMLAAQEGRIEVVMYLIQQGASV----EAVDATDHTARQLAQANNHHNIVDIF 365
Score = 87.3 bits (217), Expect = 3e-18
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 26/135 (19%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ GA+VN D + TPL A + +V L++ GADP+ N+ + L D
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212
Query: 1123 DVSDLL---------------RGNSALLDAAKKGNLGRVQ--KLLTAD--NINCRDAQGR 1163
+ + G +AL+ A +V KLL ++ A +
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 272
Query: 1164 NS------TPLHLAA 1172
+S T LH AA
Sbjct: 273 DSEKYKGRTALHYAA 287
Score = 86.2 bits (214), Expect = 7e-18
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIR-KGAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
Y G T LH A IV+ L+ KG++ ++++++ PI LAA G ++V+ L+
Sbjct: 277 YKGRTALHYAAQV---SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 333
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ GA V VD TA ++ V + +
Sbjct: 334 QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 83.5 bits (207), Expect = 5e-17
Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH--------GADPSKKNRDGATPLD 1115
+ N+ T LH A+ A+ L+ H GAD + + D TPL
Sbjct: 113 TRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171
Query: 1116 L-VREGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD----NINCR 1158
L V + + L SAL AA + G + +L + +I
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231
Query: 1159 DAQGRNSTPLHLAA 1172
D G T L + A
Sbjct: 232 DRNGM--TALMIVA 243
Score = 82.3 bits (204), Expect = 1e-16
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 1 YGRKDVVEYLLAS--------GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNT 52
+ E L+ GA ++A D PL A +V L++A A+P
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194
Query: 53 RDNWNFTPLHEAAAKGKTDV 72
+ + LH+AAA +
Sbjct: 195 YNKSERSALHQAAANRDFGM 214
Score = 81.5 bits (202), Expect = 2e-16
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 21/144 (14%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD---ANPNTRDNWN 57
R+ +V YL+ +GA + LH A + ++ +L + + D
Sbjct: 176 ARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235
Query: 58 FTPLHEAAAKGKTD-VCIGIYFAEHSSKSNQYVYGIG------GGTGCPMH-------KD 103
T L A D V E +K + G T +H
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT--ALHYAAQVSNMP 293
Query: 104 RSCYL--AHGADPFLKNQEGQTPL 125
YL G++ ++++G+TP+
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 81.5 bits (202), Expect = 2e-16
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLAS-GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+V+YL+ G++ +D+ G P+ A G +VV L++ A+ D + T
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348
Query: 60 PLHEAAAKGKTDV 72
A A ++
Sbjct: 349 ARQLAQANNHHNI 361
Score = 81.2 bits (201), Expect = 3e-16
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 23/133 (17%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
N + P + G + + P++ + L G ++
Sbjct: 50 IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAIT 109
Query: 1126 DLL-----------RGNSALLDAAKKGNLGRVQKLLTAD---------NINCRDAQGRNS 1165
+ + + L A + + + L+ + ++N D
Sbjct: 110 EPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-- 167
Query: 1166 TPLHLAAGEKRHL 1178
TPL LA R
Sbjct: 168 TPLMLAV-LARRR 179
Score = 79.2 bits (196), Expect = 1e-15
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLN--------EKNKELLAPIHLAADLGHLDV 756
G T L + + A + L+ KGA ++ + + +H AA + ++ +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Query: 757 LDTLLR-LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ L+ G+ + D G+T + A++ + + V L+ A
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Score = 78.5 bits (194), Expect = 2e-15
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 29/142 (20%)
Query: 1063 NVKHGANVNVADLWKFTPLHEAAAKGKAD---IVRLLLQHGAD--------PSKKNRDGA 1111
+ K ++ D T L A D +LL++ GA + G
Sbjct: 221 STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR 280
Query: 1112 TPLDL-VREGDQDVSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NIN 1156
T L + + + L G + ++ AA++G + V L+ ++
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340
Query: 1157 CRDAQGRNSTPLHLAAGEKRHL 1178
DA T LA H
Sbjct: 341 AVDATDH--TARQLAQ-ANNHH 359
Score = 76.9 bits (190), Expect = 7e-15
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 690 KFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR--------KGAHLNEKNKEL 741
+ +T + VN P T LH ++ E LI GA +N + +
Sbjct: 110 EPITRESVNIIDPRHNRTVLHWIASN---SSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166
Query: 742 LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
P+ LA ++ L++ GA + + ++ALH+ A + + +L+
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223
Score = 76.9 bits (190), Expect = 7e-15
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 28/143 (19%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G + ++ + + LH + G + + N N T
Sbjct: 71 NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTV 128
Query: 61 LHEAAAKGKTDVCIGIYFAEH-SSKSNQYVYGIG---------GGTGCPMH-------KD 103
LH A+ + +E + G T P+ +
Sbjct: 129 LHWIASNSSAEK------SEDLIVHEAKECIAAGADVNAMDCDENT--PLMLAVLARRRR 180
Query: 104 RSCYL-AHGADPFLKNQEGQTPL 125
YL GADP + N+ ++ L
Sbjct: 181 LVAYLMKAGADPTIYNKSERSAL 203
Score = 76.1 bits (188), Expect = 1e-14
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 17/142 (11%)
Query: 668 KDEFKGHCLLEACRQGDPSRVKKFLTS--DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVE 725
+ + + G+ + F + + P LH AI E
Sbjct: 57 LQHYSLYPNPQGYGNGN-DFLGDFNHTNLQIPTEPEPE-SPIKLHTEAAG----SYAITE 110
Query: 726 SLIRKGAHLNEKNKELLAPIHLAADLGHLDV--------LDTLLRLGAKVNLVDVLGQTA 777
+ R+ ++ + +H A + + GA VN +D T
Sbjct: 111 PITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169
Query: 778 LHRTARDDKTQAVRVLLSHNAD 799
L + + V L+ AD
Sbjct: 170 LMLAVLARRRRLVAYLMKAGAD 191
Score = 76.1 bits (188), Expect = 1e-14
Identities = 26/152 (17%), Positives = 40/152 (26%), Gaps = 33/152 (21%)
Query: 1 YGRKDVVEYLL---ASGASIHARDDGGLHPLHNACSFGHAD---VVRLLLEADANPNTR- 53
++ Y+L I D G+ L D +LL+E A +
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 54 -------DNWNFTPLHEAAAKGKTDVC---IGIYFAEHSSKSNQYVYGIGGGTGCPMH-- 101
T LH AA + +G + + G T P+
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED------GKT--PIMLA 320
Query: 102 -----KDRSCYL-AHGADPFLKNQEGQTPLDL 127
+ YL GA + T L
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352
Score = 75.0 bits (185), Expect = 3e-14
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 663 FMPRIKDEFKGHC-----------LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHC 711
+MP +++E K LLEA G R + L P
Sbjct: 17 WMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQ 67
Query: 712 AVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVD 771
+ + + E E +H A G + + + R +
Sbjct: 68 GYGNG---NDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR 123
Query: 772 VLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
+T LH A + + L+ H A I
Sbjct: 124 -HNRTVLHWIASNSSAEKSEDLIVHEAKECI 153
Score = 73.1 bits (180), Expect = 1e-13
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
P+ A G EV LI+ GA+V A+D T A + + + + +
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 72.7 bits (179), Expect = 1e-13
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRK---GAHLNEKNKELLAPIHLAADLGHLDVLDT-- 759
+ LH A + + ++ ++ + E ++ + + + A D + +
Sbjct: 199 ERSALHQAAAN---RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255
Query: 760 -LLRLGAKVNL--------VDVLGQTALHRTARDDKTQAVRVLLSHN-AD 799
L+ GAKV+ G+TALH A+ V+ L+ ++
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305
Score = 69.6 bits (171), Expect = 2e-12
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
+ G+N + D TP+ AA +G+ ++V L+Q GA + T L +
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360
Query: 1124 VSDLL 1128
+ D+
Sbjct: 361 IVDIF 365
Score = 60.0 bits (146), Expect = 2e-09
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
GR +VV YL+ GAS+ A D A + H ++V +
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 58.4 bits (142), Expect = 7e-09
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TP+ A R +V LI++GA + + LA H +++D R
Sbjct: 313 GKTPIMLAAQE---GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Query: 765 AKV 767
+
Sbjct: 370 PER 372
Score = 55.0 bits (133), Expect = 8e-08
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD 1102
++ GA+V D T A A +IV + + +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 43.8 bits (104), Expect = 3e-04
Identities = 12/113 (10%), Positives = 21/113 (18%), Gaps = 40/113 (35%)
Query: 13 SGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
H H L A G+ R N +++ P + G +
Sbjct: 26 KNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFL 76
Query: 73 CIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
+ + + P E L
Sbjct: 77 ------GDFN-------------------------HTNLQIPTEPEPESPIKL 98
Score = 39.2 bits (92), Expect = 0.007
Identities = 8/88 (9%), Positives = 22/88 (25%), Gaps = 16/88 (18%)
Query: 719 KRKAIVESL-------IRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVD 771
KR+ I S+ K ++ + A+ G++ + N +
Sbjct: 8 KRRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQ 58
Query: 772 VLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ + ++
Sbjct: 59 HYSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Score = 36.9 bits (86), Expect = 0.035
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANV 240
A + H + ++ +
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRPER 372
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 150 bits (383), Expect = 2e-42
Identities = 56/187 (29%), Positives = 79/187 (42%), Gaps = 53/187 (28%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
D L AA + V L+A+GA TD G +PLH AAQ G + +L
Sbjct: 1 DLG--KKLLEAARAGQDDEVRILMANGAPF-----TTDWLGTSPLHLAAQYGHFSTTEVL 53
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L G +AR R TPLH AA
Sbjct: 54 -LR---------------AGVS------------RDARTKVDR--TPLHMAA-------- 75
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGK 604
S GH + E+L+KHGA+VN D+ K T LH A + L+++GAD++ ++ K
Sbjct: 76 -SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK 134
Query: 605 TALDLAV 611
TA D+++
Sbjct: 135 TAFDISI 141
Score = 125 bits (318), Expect = 1e-33
Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 49/191 (25%)
Query: 398 DLESQLLEASKGGDMTVVTRLLSSCPHIVN-CRDLDGRHSTPLHFAAGYNRVAVVEYLLA 456
DL +LLEA++ G V L++ + D G +PLH AA Y + E LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMA---NGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLR 55
Query: 457 HGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTK 516
G +A K TPLH AA +G + +L L G D
Sbjct: 56 AGVSR----DARTKVDRTPLHMAASEGHANIVEVL-LK---------------HGAD--- 92
Query: 517 VKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLW 576
VNA+D T LH+A + H EV E+L+K+GA+V+ +
Sbjct: 93 ---------VNAKDMLKM--TALHWAT---------EHNHQEVVELLIKYGADVHTQSKF 132
Query: 577 KFTPLHEAAAK 587
T +
Sbjct: 133 CKTAFDISIDN 143
Score = 95.9 bits (240), Expect = 4e-23
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
YG E LL +G S AR PLH A S GHA++V +LL+ A+ N +D T
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH A +V E + +GAD +++
Sbjct: 104 LHWATEHNHQEV------VE-------------------------LLIKYGADVHTQSKF 132
Query: 121 GQTPLDL 127
+T D+
Sbjct: 133 CKTAFDI 139
Score = 91.7 bits (229), Expect = 1e-21
Identities = 40/189 (21%), Positives = 59/189 (31%), Gaps = 70/189 (37%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G + L +A + S ++ LL G + R R
Sbjct: 34 GTSPLHLAAQYGHF------STTEV---LL--RAGVS--------------RDARTKVDR 68
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLS 494
TPLH AA +VE LL HGADV NA D T LH A + ++ LL +
Sbjct: 69 --TPLHMAASEGHANIVEVLLKHGADV----NAKDMLKMTALHWATEHNHQEVVELL-IK 121
Query: 495 PSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSY 554
G D V+ + + T +
Sbjct: 122 ---------------YGAD------------VHTQSKFCK--TAFDISI---------DN 143
Query: 555 GHYEVTEML 563
G+ ++ E+L
Sbjct: 144 GNEDLAEIL 152
Score = 90.9 bits (227), Expect = 2e-21
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 675 CLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LLEA R G V+ L ++ F + G +PLH A + E L+R G
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGAPFTTDWLGTSPLHLAAQY---GHFSTTEVLLRAGVSR 60
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ + K P+H+AA GH ++++ LL+ GA VN D+L TALH + + V +L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 795 SHNAD 799
+ AD
Sbjct: 121 KYGAD 125
Score = 86.7 bits (216), Expect = 6e-20
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ +GA D +PLH AA G +LL+ G + + TPL + EG
Sbjct: 22 MANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
++ ++L +AL A + + V+ L+ +++ + + T
Sbjct: 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK--TAFD 138
Query: 1170 LAA 1172
++
Sbjct: 139 ISI 141
Score = 86.3 bits (215), Expect = 1e-19
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++VE LL GA ++A+D + LH A H +VV LL++ A+ +T+ + T
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136
Query: 61 LHEAAAKGKTDV 72
+ G D+
Sbjct: 137 FDISIDNGNEDL 148
Score = 83.6 bits (208), Expect = 8e-19
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A S GH + E+L+K GA+VNA D+ + T LH A + EV LL+ GAD
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 274 TLHNCHSKSAIDVA 287
+ K+A D++
Sbjct: 127 HTQSKFCKTAFDIS 140
Score = 81.7 bits (203), Expect = 4e-18
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+KHGA+VN D+ K T LH A ++V LL+++GAD +++ T D+ + G++
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 147 DLAEILQ 153
Score = 80.5 bits (200), Expect = 8e-18
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
L A + + V L+ GA + +P+HLAA GH + LLR G
Sbjct: 2 LGKKLLEAARA---GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ + +T LH A + V VLL H AD
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Score = 78.2 bits (194), Expect = 7e-17
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A YGHF TE+L++AG + +A TPLH AAS+ + +LL GAD
Sbjct: 37 PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Score = 77.0 bits (191), Expect = 1e-16
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
TPLH A + IVE L++ GA +N K+ + +H A + H +V++ L++ G
Sbjct: 67 DRTPLHMAASE---GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVL 793
A V+ +TA + + +L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 72.0 bits (178), Expect = 8e-15
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL--------- 1128
L EAA G+ D VR+L+ +GA + G +PL L + G +++L
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 1129 ---RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
+ L AA +G+ V+ LL ++N +D T LH A
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM--TALHWAT 108
Score = 70.5 bits (174), Expect = 3e-14
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA D +PLH AA +LL G
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Score = 63.9 bits (157), Expect = 5e-12
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
LH A + H EV E+LIK GA+V+ + T + ++ +L
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 56.6 bits (138), Expect = 2e-09
Identities = 22/99 (22%), Positives = 28/99 (28%), Gaps = 32/99 (32%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
L A G D VR+L+ A T D +PLH AA G E
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFST------TE------ 51
Query: 87 QYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L G + + +TPL
Sbjct: 52 -------------------VLLRAGVSRDARTKVDRTPL 71
Score = 53.9 bits (131), Expect = 2e-08
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLL 43
+ ++VVE L+ GA +H + + G+ D+ +L
Sbjct: 110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 36.6 bits (86), Expect = 0.014
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGAD 272
L EAA + + +L++ GA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAP 27
Score = 33.1 bits (77), Expect = 0.20
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
LL+AA+ G V+ L+ D G +PLHLAA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGT--SPLHLAA 42
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 153 bits (389), Expect = 5e-42
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 52/217 (23%)
Query: 406 ASKGGDMTVVTRLLSSCPH---IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
A G++ V RL++ ++ + + TPLH A +VV L+ GA
Sbjct: 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ--TPLHLAVITTLPSVVRLLVTAGASP- 72
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
A D+ G T H A + L L +A
Sbjct: 73 ---MALDRHGQTAAHLACEHRSPTCLRAL-LDSAAPGTL--------------------- 107
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADL-WKFTPL 581
+ AR+ G T LH A + E ++L++ GA+++ D+ +PL
Sbjct: 108 --DLEARNYDGL--TALHVAV---------NTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 582 HEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
A + LLQHGA++N + G +AL A
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Score = 151 bits (385), Expect = 2e-41
Identities = 55/256 (21%), Positives = 86/256 (33%), Gaps = 61/256 (23%)
Query: 375 GYTALQVA-GENSK---KLLQEPPSV--VDLESQ-------LLEASKGGDMTVVTRLLSS 421
G T L +A + + L +L+ L A +VV L+++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ 481
D G+ T H A + + LL A A + G T LH A
Sbjct: 69 GASP-MALDRHGQ--TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 482 KGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHF 541
+ LL L +G D ++A D + +PL
Sbjct: 126 TECQETVQLL-LE---------------RGAD------------IDAVDIKSGR-SPLIH 156
Query: 542 AAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGA 594
A + ++L++HGANVN + LH A+ + L++ GA
Sbjct: 157 AV---------ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Query: 595 DINLKNTDGKTALDLA 610
D +LKN T L +A
Sbjct: 208 DSSLKNCHNDTPLMVA 223
Score = 131 bits (333), Expect = 2e-34
Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 54/202 (26%)
Query: 403 LLEASKGGDMTVVTRLLS---SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA 459
A + T + LL + R+ DG T LH A V+ LL GA
Sbjct: 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL--TALHVAVNTECQETVQLLLERGA 140
Query: 460 DVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKK 519
D+ + D K G +PL A + + LL L G +
Sbjct: 141 DIDAVDI---KSGRSPLIHAVENNSLSMVQLL-LQ---------------HGAN------ 175
Query: 520 LVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFT 579
VNA+ +G + LH A+ G + LV+ GA+ ++ + T
Sbjct: 176 ------VNAQMYSGS--SALHSAS---------GRGLLPLVRTLVRSGADSSLKNCHNDT 218
Query: 580 PLHEAA-------AKALLQHGA 594
PL A + A
Sbjct: 219 PLMVARSRRVIDILRGKATRPA 240
Score = 103 bits (260), Expect = 8e-25
Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 46/157 (29%)
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
D+ G TPLH A +G L ++ G +
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRL-VNLFQQG-----------GRE------------ 38
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
++ + + TPLH A V +LV GA+ D T H A
Sbjct: 39 LDIYNNLRQ--TPLHLAV---------ITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87
Query: 586 -------AKALLQHGA----DINLKNTDGKTALDLAV 611
+ALL A D+ +N DG TAL +AV
Sbjct: 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Score = 92.9 bits (232), Expect = 4e-21
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 20/133 (15%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ G +++ + + TPLH A +VRLL+ GA P +R G T L
Sbjct: 33 QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92
Query: 1123 DVSDLL----------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS 1165
L G +AL A VQ LL +I+ D +
Sbjct: 93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR- 151
Query: 1166 TPLHLAAGEKRHL 1178
+PL A E L
Sbjct: 152 SPLIHAV-ENNSL 163
Score = 91.7 bits (229), Expect = 9e-21
Identities = 40/250 (16%), Positives = 72/250 (28%), Gaps = 59/250 (23%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A V +L+ AGA+ A+D T H A LL A P
Sbjct: 46 RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA-P 104
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPY 332
+ +++ + L A V+ L ++
Sbjct: 105 GTLDLEARNYDGLTA----------------LHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 333 TGDTPLPGTLLIDLLSDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGENSKKL 389
+G +PL + + + +++ + + A V +G +AL A
Sbjct: 149 SGRSPL-------IHAVENNSLSMVQLLLQHGANVNAQMYSG----SSALHSASGRGLL- 196
Query: 390 LQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVA 449
+V L+ G D + ++ TPL A +
Sbjct: 197 -----PLVRT---LV--RSGAD--------------SSLKNCHND--TPLMVARSRRVID 230
Query: 450 VVEYLLAHGA 459
++ A
Sbjct: 231 ILRGKATRPA 240
Score = 90.2 bits (225), Expect = 3e-20
Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 34/129 (26%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
++ V+ LL GA I A D G PL +A +V+LLL+ AN N + +
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKN 118
LH A+ +G + L GAD LKN
Sbjct: 186 ALHSASGRGLLPL------VR--------------------------TLVRSGADSSLKN 213
Query: 119 QEGQTPLDL 127
TPL +
Sbjct: 214 CHNDTPLMV 222
Score = 90.2 bits (225), Expect = 3e-20
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
++ +G +PL AV ++V+ L++ GA++N + + +H A+ G L +
Sbjct: 142 IDAVDIKSGRSPLIHAV---ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL 198
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ TL+R GA +L + T L +R + A
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 89.4 bits (223), Expect = 6e-20
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+V+ LL GA+++A+ G LH+A G +VR L+ + A+ + ++ N TP
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 61 LHEAAAKGKTDV 72
L A ++ D+
Sbjct: 220 LMVARSRRVIDI 231
Score = 86.4 bits (215), Expect = 7e-19
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 22/97 (22%)
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV----KHGANVNVADLWKFTPL 581
D G TPLH A G+ LV + G +++ + + TPL
Sbjct: 2 ATRADEDGD--TPLHIAV---------VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 50
Query: 582 HEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
H A + L+ GA + G+TA LA
Sbjct: 51 HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87
Score = 85.6 bits (213), Expect = 1e-18
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLI----RKGAHLNEKNKELLAPIHLAADLGHLDVLDTL 760
GDTPLH AV V L+ + G L+ N P+HLA V+ L
Sbjct: 9 GDTPLHIAVVQ---GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 761 LRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
+ GA +D GQTA H +R LL A ++
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Score = 84.0 bits (209), Expect = 5e-18
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 1 YGRKDVVEYLL----ASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNW 56
G V L+ G + ++ PLH A VVRLL+ A A+P D
Sbjct: 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH 78
Query: 57 NFTPLHEAAAKGKTDV 72
T H A
Sbjct: 79 GQTAAHLACEHRSPTC 94
Score = 83.7 bits (208), Expect = 6e-18
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 1064 VKHGA----NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNR-DGATPLDL-V 1117
+ A ++ + T LH A + V+LLL+ GAD + G +PL V
Sbjct: 99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158
Query: 1118 REGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRN 1164
+ LL G+SAL A+ +G L V+ L+ + + + ++
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND- 217
Query: 1165 STPLHLAAGEKRHL 1178
TPL +A +R +
Sbjct: 218 -TPLMVAR-SRRVI 229
Score = 82.9 bits (206), Expect = 1e-17
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN-KELLAPIHLAADLGHLDVLDTLLRL 763
G T LH AV + + + V+ L+ +GA ++ + K +P+ A + L ++ LL+
Sbjct: 116 GLTALHVAVNT---ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA VN G +ALH + VR L+ AD
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Score = 82.5 bits (205), Expect = 2e-17
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH----LNEKNKELLAPIHLAADLGHLDVLDTL 760
G T H A + + +L+ A L +N + L +H+A + + + L
Sbjct: 79 GQTAAHLACEH---RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 761 LRLGAKVNLVDV-LGQTALHRTARDDKTQAVRVLLSHNAD 799
L GA ++ VD+ G++ L ++ V++LL H A+
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Score = 82.5 bits (205), Expect = 2e-17
Identities = 30/141 (21%), Positives = 45/141 (31%), Gaps = 25/141 (17%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA----NPNTRDNW 56
VV L+ +GAS A D G H AC +R LL++ A + R+
Sbjct: 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 57 NFTPLHEAAAKGKTDVCIGIYFAEH----SSKSNQYVYGIGGGTGCPMH-------KDRS 105
T LH A + E + + G + P+
Sbjct: 116 GLTALHVAVNTECQETV--QLLLERGADIDAVDIKS-----GRS--PLIHAVENNSLSMV 166
Query: 106 CYL-AHGADPFLKNQEGQTPL 125
L HGA+ + G + L
Sbjct: 167 QLLLQHGANVNAQMYSGSSAL 187
Score = 76.3 bits (189), Expect = 2e-15
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++HGANVN + LH A+ +G +VR L++ GAD S KN TPL +
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229
Query: 1123 DVSDLL 1128
D+
Sbjct: 230 DILRGK 235
Score = 72.5 bits (179), Expect = 4e-14
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 214 GLVPLHNACSYGHFEVTEMLI----KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSE 269
G PLH A G+ L+ + G ++ + + TPLH A + V LL++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 270 GADPTLHNCHSKSAIDVA 287
GA P + H ++A +A
Sbjct: 69 GASPMALDRHGQTAAHLA 86
Score = 63.2 bits (155), Expect = 6e-11
Identities = 23/112 (20%), Positives = 30/112 (26%), Gaps = 37/112 (33%)
Query: 19 ARDDGGLHPLHNACSFGHADVVRLLLE----ADANPNTRDNWNFTPLHEAAAKGKTDVCI 74
D+ G PLH A G+ V L+ + +N TPLH A V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV-- 61
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L GA P ++ GQT
Sbjct: 62 ----VR--------------------------LLVTAGASPMALDRHGQTAA 83
Score = 62.5 bits (153), Expect = 9e-11
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 734 LNEKNKELLAPIHLAADLGHLDV----LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQA 789
+++ P+H+A G+L ++ + G ++++ + L QT LH
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 790 VRVLLSHNAD 799
VR+L++ A
Sbjct: 62 VRLLVTAGAS 71
Score = 60.9 bits (149), Expect = 3e-10
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
G +V L+ SGA ++ PL A S D++R A+
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 54.8 bits (133), Expect = 4e-08
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
V+ GA+ ++ + TPL A ++ DI+R A
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 38.2 bits (90), Expect = 0.010
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 217 PLHNACSYGHFEVTEMLIKAGAN 239
PL A S ++ A+
Sbjct: 219 PLMVARSRRVIDILRGKATRPAS 241
Score = 37.4 bits (88), Expect = 0.016
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 1116 LVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-----NINCRDAQGRNSTPLHL 1170
+ D+D G++ L A +GNL V +L+ ++ + + TPLHL
Sbjct: 1 MATRADED------GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ--TPLHL 52
Query: 1171 AA 1172
A
Sbjct: 53 AV 54
Score = 32.8 bits (76), Expect = 0.57
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 27/75 (36%)
Query: 51 NTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAH 110
D TPLH A +G + + +
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPA------VH---------RLV------------NLFQQG 35
Query: 111 GADPFLKNQEGQTPL 125
G + + N QTPL
Sbjct: 36 GRELDIYNNLRQTPL 50
Score = 31.7 bits (73), Expect = 1.4
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 240 VNAMDLWQFTPLHEAASKSRLEV----CSLLLSEGAD 272
D TPLH A + L +L G +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE 38
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 151 bits (384), Expect = 6e-42
Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 58/222 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A++ V L + + + D +G TPL+ A N + + + L+ GAD+
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQV-DEVDTEGN--TPLNIAVHNNDIEIAKALIDRGADI- 65
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N + +P A +GRT++ A + L + +
Sbjct: 66 ---NLQNSISDSPYLYAGAQGRTEILAYM-LKHATPD----------------------- 98
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG-ANVNVADLWKFTPL 581
+N + G L AA GH + ++L++ G +++ + + +T L
Sbjct: 99 ---LNKHNRYGG--NALIPAA---------EKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
Query: 582 HEAA------------AKALLQHGADINLKNTDGKTALDLAV 611
EA K L+++GAD ++K+ G+TA+D A
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Score = 132 bits (335), Expect = 3e-35
Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 58/213 (27%)
Query: 429 RDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLS 488
+ + L A + V E L V + D G TPL+ A +++
Sbjct: 2 KTYEVG--ALLEAANQRDTKKVKEILQDTTYQV----DEVDTEGNTPLNIAVHNNDIEIA 55
Query: 489 ALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPL 548
L + +G D +N +++ +P +A
Sbjct: 56 KAL-ID---------------RGAD------------INLQNSISD--SPYLYAG----- 80
Query: 549 HNACSYGHYEVTEMLVKHGA-NVNVADLWKFTPLHEAA-------AKALLQHG-ADINLK 599
+ G E+ ++KH ++N + + L AA K LL+ G DI+ +
Sbjct: 81 ----AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 600 NTDGKTALDLAVPCTRAVLSGDHKK--EELLEA 630
N G TAL AV + ++ + L+E
Sbjct: 137 NDFGYTALIEAVGLREG--NQLYQDIVKLLMEN 167
Score = 121 bits (307), Expect = 1e-31
Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 65/240 (27%)
Query: 374 GGYTALQVAGENS----KKLLQEPPSVVDLESQ-------LLEASKGGDMTVVTRLLSSC 422
L+ A + K++LQ+ + ++ L A D+ + L+
Sbjct: 5 EVGALLEAANQRDTKKVKEILQD--TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-- 60
Query: 423 PH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA-DVHSKDNATDKWGFTPLHEA 479
+N ++ +P +A R ++ Y+L H D+ N +++G L A
Sbjct: 61 -RGADINLQNSISD--SPYLYAGAQGRTEILAYMLKHATPDL----NKHNRYGGNALIPA 113
Query: 480 AQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPL 539
A+KG LL L + ++ ++ G T L
Sbjct: 114 AEKGHIDNVKLL-LEDGRED--------------------------IDFQNDFGY--TAL 144
Query: 540 HFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQH 592
A GL + + ++ ++L+++GA+ ++ D T + A +K L Q+
Sbjct: 145 IEAVGLREGNQ----LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 116 bits (292), Expect = 2e-29
Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 51/228 (22%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLK 599
L A +V E+L V+ D TPL+ A AKAL+ GADINL+
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 600 NTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCC 657
N+ + A + + +L+ T D+
Sbjct: 69 NSISDSPYLYAG-------AQGRTEILAYMLKH---------------ATPDL------- 99
Query: 658 KMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV--VNFKHPYTGDTPLHCAVTS 715
+ + G+ L+ A +G VK L ++F++ + G T L AV
Sbjct: 100 --------NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-GYTALIEAVGL 150
Query: 716 PYPKR--KAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
+ + IV+ L+ GA + K+ + A G+ ++ L
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 94.8 bits (237), Expect = 3e-22
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
V+ D TPL+ A +I + L+ GAD + +N +P +G
Sbjct: 26 QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85
Query: 1123 DVSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTP 1167
++ + G +AL+ AA+KG++ V+ LL +I+ ++ G T
Sbjct: 86 EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY--TA 143
Query: 1168 LHLAA----GEKRHL 1178
L A G + +
Sbjct: 144 LIEAVGLREGNQLYQ 158
Score = 91.0 bits (227), Expect = 9e-21
Identities = 51/256 (19%), Positives = 83/256 (32%), Gaps = 79/256 (30%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
L A +V E+L V+ +D TPL+ A + +E+ L+ GAD L
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 277 NCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTS---DVVNFKHPYT 333
N S S L A QG + ++ +N + Y
Sbjct: 69 NSISDSP---------------------YLYAGAQGRTEIL-AYMLKHATPDLNKHNRY- 105
Query: 334 GDTPL-----PG-----TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVA- 382
G L G LL++ +D + +++ GYTAL A
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDI--------------DFQND---FGYTALIEAV 148
Query: 383 -GENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHF 441
+L Q+ +V L L+ G D + +D GR T + +
Sbjct: 149 GLREGNQLYQD---IVKL---LM--ENGAD--------------QSIKDNSGR--TAMDY 184
Query: 442 AAGYNRVAVVEYLLAH 457
A + + L +
Sbjct: 185 ANQKGYTEISKILAQY 200
Score = 89.4 bits (223), Expect = 3e-20
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
K V E L + + D G PL+ A ++ + L++ A+ N +++ + +P
Sbjct: 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75
Query: 61 LHEAAAKGKTDV 72
A A+G+T++
Sbjct: 76 YLYAGAQGRTEI 87
Score = 89.0 bits (222), Expect = 4e-20
Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA-NPNTRDNWNFT 59
++ + L+ GA I+ ++ P A + G +++ +L+ + N + +
Sbjct: 49 NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108
Query: 60 PLHEAAAKGKTDVC---IGIYFAEHSSKSNQYVYG-------IGGGTGCPMHKDRSCYL- 108
L AA KG D + + +++ +G +G G +++D L
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDFQND---FGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 109 AHGADPFLKNQEGQTPL 125
+GAD +K+ G+T +
Sbjct: 166 ENGADQSIKDNSGRTAM 182
Score = 81.3 bits (202), Expect = 2e-17
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 667 IKDEFKGHCLLEACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLHCAVTSPYPKRKAI 723
+K + LLEA Q D +VK+ L V + G+TPL+ AV + I
Sbjct: 1 MKTY-EVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTE-GNTPLNIAV---HNNDIEI 54
Query: 724 VESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK-VNLVDVLGQTALHRTA 782
++LI +GA +N +N +P A G ++L +L+ +N + G AL A
Sbjct: 55 AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114
Query: 783 RDDKTQAVRVLLSH-NAD 799
V++LL D
Sbjct: 115 EKGHIDNVKLLLEDGRED 132
Score = 79.0 bits (196), Expect = 1e-16
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 1 YGRKDVVEYLLASG-ASIHARDDGGLHPLHNACSF-----GHADVVRLLLEADANPNTRD 54
G D V+ LL G I ++D G L A + D+V+LL+E A+ + +D
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Query: 55 NWNFTPLHEAAAKGKTDV 72
N T + A KG T++
Sbjct: 176 NSGRTAMDYANQKGYTEI 193
Score = 75.6 bits (187), Expect = 1e-15
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
D+P A R I+ +++ LN+ N+ + AA+ GH+D + LL
Sbjct: 72 SDSPYLYAGAQ---GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 764 G-AKVNLVDVLGQTALHRTARDDKTQA-----VRVLLSHNAD 799
G ++ + G TAL + V++L+ + AD
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Score = 72.9 bits (180), Expect = 1e-14
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKG-AHLNEKNKELLAPIHLAADL-----GHLDVLD 758
G L A V+ L+ G ++ +N + A L + D++
Sbjct: 106 GGNALIPAAEK---GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 759 TLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
L+ GA ++ D G+TA+ + T+ ++L +N
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 72.9 bits (180), Expect = 1e-14
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 1064 VKHGA-NVNVADLWKFTPLHEAAAKGKADIVRLLLQHG-ADPSKKNRDGATPLDLVREGD 1121
+KH ++N + + L AA KG D V+LLL+ G D +N G T L
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE----- 146
Query: 1122 QDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
+ L + V+ L+ + + +D GR T + A
Sbjct: 147 ----------AVGLREGNQLYQDIVKLLMENGADQSIKDNSGR--TAMDYAN 186
Score = 68.6 bits (169), Expect = 4e-13
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 33/107 (30%)
Query: 20 RDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFA 79
+ L A V +L + + D TPL+ A ++ A
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI------A 55
Query: 80 EHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+ L GAD L+N +P
Sbjct: 56 K--------------------------ALIDRGADINLQNSISDSPY 76
Score = 61.7 bits (151), Expect = 1e-10
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 1064 VKHG-ANVNVADLWKFTPLHEAAA-----KGKADIVRLLLQHGADPSKKNRDGATPLDLV 1117
++ G +++ + + +T L EA + DIV+LL+++GAD S K+ G T +D
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY- 184
Query: 1118 REGDQDVSDLLRGNSALLDAAKKGNLGRVQKLL 1150
A +KG + L
Sbjct: 185 -------------------ANQKGYTEISKILA 198
Score = 56.3 bits (137), Expect = 6e-09
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD 47
+D+V+ L+ +GA +D+ G + A G+ ++ ++L + +
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 49.4 bits (119), Expect = 1e-06
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
+++GA+ ++ D T + A KG +I ++L Q+
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 34.7 bits (81), Expect = 0.095
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGAD 272
L A + +V +L
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQ 31
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 154 bits (392), Expect = 7e-42
Identities = 56/234 (23%), Positives = 85/234 (36%), Gaps = 62/234 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L EA GG ++ V LL + N D TPL A V LL HGA V
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQV-NGVTADWH--TPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ + +P+HEAA++G + L ++ GG+
Sbjct: 153 PESD-----LASPIHEAARRGHVECVNSL-IA---------------YGGN--------- 182
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
++ + + TPL+ A C + L++ GA+VN + +PLH
Sbjct: 183 ---IDHKISHLG--TPLYLA---------CENQQRACVKKLLESGADVN-QGKGQDSPLH 227
Query: 583 EAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLE 629
A L+ GAD KN +GK ++L P + LE
Sbjct: 228 AVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP-------ESPLAQLFLE 274
Score = 152 bits (387), Expect = 3e-41
Identities = 62/255 (24%), Positives = 83/255 (32%), Gaps = 59/255 (23%)
Query: 368 RDNGQSG--GYTALQVAGENSKKLLQEPPSV--VDLESQLLEASKGGDMTVVTRLLSSCP 423
D Q G G +LL P V S + EA+ G + L+S
Sbjct: 24 MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW 83
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
VN D +PLH A ++ V+ LL HGA V N TPL A G
Sbjct: 84 A-VNIITADHV--SPLHEACLGGHLSCVKILLKHGAQV----NGVTADWHTPLFNACVSG 136
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
LL L G V ++P+H AA
Sbjct: 137 SWDCVNLL-LQ---------------HGAS------------VQPES---DLASPIHEAA 165
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
GH E L+ +G N++ TPL+ A K LL+ GAD+
Sbjct: 166 ---------RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Query: 597 NLKNTDGKTALDLAV 611
N + + L V
Sbjct: 217 N-QGKGQDSPLHAVV 230
Score = 130 bits (329), Expect = 2e-33
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 28/181 (15%)
Query: 442 AAGYNRVAVVEYLLAHGADVHSKD-NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAAND 500
+ ++ L+ G+ + S D G P G LS PL A +D
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN--PLMGDAVSD 59
Query: 501 --PLRELFEACKGGDLTKVKKLVNPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHY 557
P+ EA G ++ L++ VN +PLH A C GH
Sbjct: 60 WSPM---HEAAIHGHQLSLRNLISQGWAVNIITADHV--SPLHEA---------CLGGHL 105
Query: 558 EVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
++L+KHGA VN TPL A LLQHGA + ++ D + + A
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEA 164
Query: 611 V 611
Sbjct: 165 A 165
Score = 122 bits (310), Expect = 5e-31
Identities = 66/380 (17%), Positives = 101/380 (26%), Gaps = 137/380 (36%)
Query: 208 GQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLL 267
Q G P G L+ +A+ W +P+HEAA L+
Sbjct: 27 KQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLI 79
Query: 268 SEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-V 326
S+G + S L EAC G S VK L V
Sbjct: 80 SQGWAVNIITADHVSP---------------------LHEACLGGHLSCVKILLKHGAQV 118
Query: 327 NFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRD------------NGQSG 374
N TPL A V D +S
Sbjct: 119 NGVTAD-WHTPL---------------------FNACVSGSWDCVNLLLQHGASVQPESD 156
Query: 375 GYTALQVA-GENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDG 433
+ + A + V+ L+ + GG+ ++ +
Sbjct: 157 LASPIHEAARRGHVE-------CVNS---LI--AYGGN--------------IDHKISHL 190
Query: 434 RHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPL 493
TPL+ A + A V+ LL GADV+ K +PLH + +L+ LL +
Sbjct: 191 G--TPLYLACENQQRACVKKLLESGADVN-----QGKGQDSPLHAVVRTASEELACLL-M 242
Query: 494 SPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACS 553
G D A++ G+ P+
Sbjct: 243 D---------------FGAD------------TQAKNAEGK--RPVELVP---------P 264
Query: 554 YGHYEVTEMLVKHGANVNVA 573
L + GA++
Sbjct: 265 ESP-LAQLFLEREGASLPKP 283
Score = 101 bits (255), Expect = 9e-24
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ G VN+ +PLHEA G V++LL+HGA + D TPL G
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 138
Query: 1123 DVSDLL-----------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHL 1170
D +LL S + +AA++G++ V L+ NI+ + + TPL+L
Sbjct: 139 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG--TPLYL 196
Query: 1171 AAGEKRHL 1178
A E +
Sbjct: 197 AC-ENQQR 203
Score = 99.1 bits (248), Expect = 8e-23
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + + L++ G +++ + PLH AC GH V++LL+ A N TP
Sbjct: 69 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128
Query: 61 LHEAAAKGKTDVC-----IGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL 108
L A G D G A +S+ + P+H + L
Sbjct: 129 LFNACVSGSWDCVNLLLQHG---ASVQPESD-------LAS--PIHEAARRGHVECVNSL 176
Query: 109 -AHGADPFLKNQEGQTPL 125
A+G + K TPL
Sbjct: 177 IAYGGNIDHKISHLGTPL 194
Score = 97.6 bits (244), Expect = 3e-22
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D V LL GAS+ D P+H A GH + V L+ N + + + TP
Sbjct: 135 SGSWDCVNLLLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 193
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL-AHGA 112
L+ A + E + NQ G G + P+H ++ +C L GA
Sbjct: 194 LYLACENQQRACV--KKLLESGADVNQ---GKGQDS--PLHAVVRTASEELACLLMDFGA 246
Query: 113 DPFLKNQEGQTPLDLTVAE 131
D KN EG+ P++L E
Sbjct: 247 DTQAKNAEGKRPVELVPPE 265
Score = 93.7 bits (234), Expect = 5e-21
Identities = 40/250 (16%), Positives = 74/250 (29%), Gaps = 70/250 (28%)
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLA 610
S+ H+ + LV G+++ D DG
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMA---------------------SMDGKQGGMDGSKPAGPR 40
Query: 611 VPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDE 670
L + +MG + ++ P+
Sbjct: 41 -----------DFPGIRLLSNPLMGDAVSDWS-PM------------------------- 63
Query: 671 FKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR 729
H A G ++ ++ VN +PLH A + V+ L++
Sbjct: 64 ---HE---AAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLG---GHLSCVKILLK 113
Query: 730 KGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQA 789
GA +N + P+ A G D ++ LL+ GA V + +H AR +
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVEC 172
Query: 790 VRVLLSHNAD 799
V L+++ +
Sbjct: 173 VNSLIAYGGN 182
Score = 88.3 bits (220), Expect = 3e-19
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
++ V+ LL SGA ++ PLH ++ LL++ A+ ++ P
Sbjct: 200 NQQRACVKKLLESGADVNQGKGQDS-PLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258
Query: 61 LHEAAAKGKTDVCI 74
+ +
Sbjct: 259 VELVPPESPLAQLF 272
Score = 87.2 bits (217), Expect = 1e-18
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
TPL A S V L++ GA + ++ +L +PIH AA GH++ +++L+ G
Sbjct: 125 WHTPLFNACVS---GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ T L+ + + V+ LL AD
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Score = 86.8 bits (216), Expect = 1e-18
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ +G N++ TPL+ A + V+ LL+ GAD ++ +PL
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHA------- 228
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
+ + L+ + ++A+G+ P+ L E
Sbjct: 229 -------------VVRTASEELACLLMDFGADTQAKNAEGK--RPVELVPPE 265
Score = 83.7 bits (208), Expect = 1e-17
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+P+H A V SLI G +++ K L P++LA + + LL G
Sbjct: 157 LASPIHEAA---RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN + LH R + +L+ AD
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGAD 247
Score = 81.0 bits (201), Expect = 1e-16
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ + + ++P+HEAA G +R L+ G + D +PL G
Sbjct: 48 LSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL 105
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+L ++ L +A G+ V LL ++ + ++P+H
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIH 162
Query: 1170 LAA 1172
AA
Sbjct: 163 EAA 165
Score = 79.8 bits (198), Expect = 3e-16
Identities = 24/157 (15%), Positives = 36/157 (22%), Gaps = 64/157 (40%)
Query: 1 YGRKDVVEYLLASGASIHARDDGG--------LH-----------------------PLH 29
+ L+ G+ + + D P+H
Sbjct: 5 HHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH 64
Query: 30 NACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYV 89
A GH +R L+ N + +PLHEA G +
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC------VK--------- 109
Query: 90 YGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L HGA + TPL
Sbjct: 110 -----------------ILLKHGAQVNGVTADWHTPL 129
Score = 77.5 bits (192), Expect = 1e-15
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
TPL+ A + +++A V+ L+ GA +N + K +P+H ++ L+ G
Sbjct: 190 LGTPLYLACEN---QQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A + G+ + + + L A
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPLAQL-FLEREGAS 279
Score = 74.5 bits (184), Expect = 2e-14
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++ GA+VN + +PLH ++ LL+ GAD KN +G P++LV
Sbjct: 210 LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 1124 VSDLLRGNSALLDAAK 1139
L A L K
Sbjct: 269 AQLFLEREGASLPKPK 284
Score = 62.5 bits (153), Expect = 2e-10
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 1084 AAAKGKADIVRLLLQHGA-----DPSKKNRDGATPL--------DLVREGDQDVSDLLRG 1130
++ L+ G+ D + DG+ P L+ + D +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVSD 59
Query: 1131 NSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
S + +AA G+ ++ L++ +N A +PLH A
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV--SPLHEAC 100
Score = 54.4 bits (132), Expect = 8e-08
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
+++ L+ GA A++ G P+ + L A+
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 47.1 bits (113), Expect = 2e-05
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
S H L+ ++ + D + + G D GI + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRD-FPGIRLLSNPLMGD---- 55
Query: 91 GIGGGTGCPMH-------KDRSCYL-AHGADPFLKNQEGQTPL 125
+ + PMH + L + G + + +PL
Sbjct: 56 AVSDWS--PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL 96
Score = 42.1 bits (100), Expect = 7e-04
Identities = 9/84 (10%), Positives = 20/84 (23%), Gaps = 31/84 (36%)
Query: 747 LAADLGHLDVLDTLLRLGAKVNLVDVL-------------------------------GQ 775
+ + H L+ G+ + +D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 776 TALHRTARDDKTQAVRVLLSHNAD 799
+ +H A ++R L+S
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWA 84
Score = 30.5 bits (70), Expect = 2.8
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNE 736
G P+ P+ L R+GA L +
Sbjct: 255 GKRPVELVP----PESPLAQLFLEREGASLPK 282
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 153 bits (388), Expect = 9e-42
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 54/214 (25%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA-DVHSK 464
A++ RLL + N +D GR TPLH A + V + L+ + A D+
Sbjct: 64 AARYSRSDAAKRLLEASADA-NIQDNMGR--TPLHAAVSADAQGVFQILIRNRATDL--- 117
Query: 465 DNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQ 524
+A G TPL AA+ + L ++ D
Sbjct: 118 -DARMHDGTTPLILAARLAVEGMLEDL-IN---------------SHAD----------- 149
Query: 525 TVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEA 584
VNA D G+ + LH+AA + + + +L+K+GAN ++ + + TPL A
Sbjct: 150 -VNAVDDLGK--SALHWAA---------AVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197
Query: 585 A-------AKALLQHGADINLKNTDGKTALDLAV 611
A AK LL H A+ ++ + + D+A
Sbjct: 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Score = 137 bits (348), Expect = 2e-36
Identities = 44/205 (21%), Positives = 66/205 (32%), Gaps = 52/205 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A V L+ + ++ R DG TPL AA ++E L+ ADV
Sbjct: 94 LHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLAVEGMLEDLINSHADV- 150
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
NA D G + LH AA + +L L G +
Sbjct: 151 ---NAVDDLGKSALHWAAAVNNVDAAVVL-LK---------------NGAN--------- 182
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ ++ TPL AA G YE ++L+ H AN ++ D P
Sbjct: 183 ---KDMQNNREE--TPLFLAA---------REGSYETAKVLLDHFANRDITDHMDRLPRD 228
Query: 583 EAA-------AKALLQHGADINLKN 600
A + L + +
Sbjct: 229 IAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 99.5 bits (249), Expect = 3e-23
Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 37/156 (23%)
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN--P 523
N GFTPL A+ G L + + +
Sbjct: 4 NVRGPDGFTPLMIASCSG----------------GGLETGNSEEEEDAPAVISDFIYQGA 47
Query: 524 QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHE 583
N D G T LH AA Y + + L++ A+ N+ D TPLH
Sbjct: 48 SLHNQTDRTGE--TALHLAA---------RYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 584 AA-------AKALLQHGA-DINLKNTDGKTALDLAV 611
A + L+++ A D++ + DG T L LA
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Score = 93.3 bits (233), Expect = 4e-21
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ ++E L+ S A ++A DD G LH A + + D +LL+ AN + ++N TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L AA +G + A+ L H A+ + +
Sbjct: 194 LFLAAREGSYET------AK-------------------------VLLDHFANRDITDHM 222
Query: 121 GQTPLDL 127
+ P D+
Sbjct: 223 DRLPRDI 229
Score = 93.3 bits (233), Expect = 4e-21
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 1064 VKHGANV-NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ GA++ N D T LH AA ++D + LL+ AD + ++ G TPL V
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 1122 QDVSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
Q V +L G + L+ AA+ G ++ L+ + ++N D G+ +
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK--SA 160
Query: 1168 LHLAA 1172
LH AA
Sbjct: 161 LHWAA 165
Score = 91.8 bits (229), Expect = 1e-20
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL A + ++E LI A +N + + +H AA + ++D LL+ G
Sbjct: 124 GTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A ++ + +T L AR+ + +VLL H A+
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 89.4 bits (223), Expect = 8e-20
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G TPLH AV++ + + + LIR A L+ + + P+ LAA L +L+ L+
Sbjct: 90 GRTPLHAAVSA---DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN VD LG++ALH A + A VLL + A+
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Score = 87.9 bits (219), Expect = 3e-19
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 24/116 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ A+VN D + LH AAA D +LL++GA+ +N TPL L
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL------- 196
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHL 1178
AA++G+ + LL N + D R P +A E+ H
Sbjct: 197 -------------AAREGSYETAKVLLDHFANRDITDHMDR--LPRDIAQ-ERMHH 236
Score = 86.8 bits (216), Expect = 6e-19
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 34/127 (26%)
Query: 1 YGRKDVVEYLLASGAS-IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+ V + L+ + A+ + AR G PL A ++ L+ + A+ N D+ +
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKN 118
LH AAA D A L +GA+ ++N
Sbjct: 160 ALHWAAAVNNVDA------AV--------------------------VLLKNGANKDMQN 187
Query: 119 QEGQTPL 125
+TPL
Sbjct: 188 NREETPL 194
Score = 85.6 bits (213), Expect = 2e-18
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 1 YGRKDVVEYLLASGASIH-ARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
V+ + GAS+H D G LH A + +D + LLEA A+ N +DN T
Sbjct: 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
Query: 60 PLHEAAAKGKTDVCIGIYFAEH-----SSKSNQYVYGIGGGTGCPMH-------KDRSCY 107
PLH A + V + ++ + G T P+ +
Sbjct: 93 PLHAAVSADAQGVF--QILIRNRATDLDARMHD------GTT--PLILAARLAVEGMLED 142
Query: 108 L-AHGADPFLKNQEGQTPL 125
L AD + G++ L
Sbjct: 143 LINSHADVNAVDDLGKSAL 161
Score = 85.2 bits (212), Expect = 2e-18
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G + LH A L++ GA+ + +N P+ LAA G + LL
Sbjct: 157 GKSALHWAAAV---NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A ++ D + + VR+L +
Sbjct: 214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 84.8 bits (211), Expect = 3e-18
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 695 DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL 754
+ N TG+T LH A R + L+ A N ++ P+H A
Sbjct: 48 SLHNQTD-RTGETALHLAARY---SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 755 DVLDTLLRLGAK-VNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
V L+R A ++ G T L AR + L++ +AD
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Score = 84.1 bits (209), Expect = 5e-18
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
D LL +GA+ +++ PL A G + ++LL+ AN + D+ + P
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Query: 61 LHEAAAKGKTDV 72
A + D+
Sbjct: 227 RDIAQERMHHDI 238
Score = 82.9 bits (206), Expect = 1e-17
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 697 VNFKHPYTGDTPLHCAV----------TSPYPKRKAIVESLIRKGAHL-NEKNKELLAPI 745
VN + P G TPL A + A++ I +GA L N+ ++ +
Sbjct: 3 VNVRGPD-GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 746 HLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
HLAA D LL A N+ D +G+T LH D ++L+ + A
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 79.0 bits (196), Expect = 3e-16
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 31/133 (23%)
Query: 1069 NVNVADLWKFTPLHEAAAKGKA-------------DIVRLLLQHGADPS-KKNRDGATPL 1114
+VNV FTPL A+ G ++ + GA + +R G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 1115 DL-VREGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLT--ADNINCRD 1159
L R D + L G + L A G Q L+ A +++ R
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 1160 AQGRNSTPLHLAA 1172
G TPL LAA
Sbjct: 122 HDGT--TPLILAA 132
Score = 77.5 bits (192), Expect = 9e-16
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G LH A + + + +L+K GAN + + + TPL AA + E +LL A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Query: 274 TLHNCHSKSAIDVA 287
+ + + D+A
Sbjct: 217 DITDHMDRLPRDIA 230
Score = 74.8 bits (185), Expect = 7e-15
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GAN ++ + + TPL AA +G + ++LL H A+ + P D+
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236
Query: 1123 DVSDLL 1128
D+ LL
Sbjct: 237 DIVRLL 242
Score = 74.8 bits (185), Expect = 8e-15
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PL A G +E ++L+ AN + D P A + ++ LL E H
Sbjct: 193 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Query: 277 N 277
+
Sbjct: 253 H 253
Score = 74.8 bits (185), Expect = 8e-15
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PL A + E LI + A+VNA+D + LH AA+ + ++ +LL GA+
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Score = 72.5 bits (179), Expect = 5e-14
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
G LH A Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 66.7 bits (164), Expect = 4e-12
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGA-NVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A S V ++LI+ A +++A TPL AA + + L++ AD
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149
Score = 60.9 bits (149), Expect = 4e-10
Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 14/74 (18%)
Query: 214 GLVPLHNACSYG-------------HFEVTEMLIKAGANV-NAMDLWQFTPLHEAASKSR 259
G PL A G V I GA++ N D T LH AA SR
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 260 LEVCSLLLSEGADP 273
+ LL AD
Sbjct: 70 SDAAKRLLEASADA 83
Score = 60.9 bits (149), Expect = 4e-10
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
G + + LL A+ D P A H D+VRLL + +
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 55.9 bits (136), Expect = 2e-08
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+TPL A + L+ A+ + + P +A + H D++ L
Sbjct: 190 EETPLFLAARE---GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246
Query: 765 AKVN 768
+
Sbjct: 247 HHHH 250
Score = 54.4 bits (132), Expect = 5e-08
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 47/124 (37%)
Query: 17 IHARDDGGLHPLHNACSFG-------------HADVVRLLLEADAN-PNTRDNWNFTPLH 62
++ R G PL A G V+ + A+ N D T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 63 EAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEG 121
AA ++D A+ L AD +++ G
Sbjct: 63 LAARYSRSDA------AK--------------------------RLLEASADANIQDNMG 90
Query: 122 QTPL 125
+TPL
Sbjct: 91 RTPL 94
Score = 54.0 bits (131), Expect = 7e-08
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
+ H AN ++ D P A + DIVRLL +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 45.2 bits (108), Expect = 6e-05
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 21/64 (32%)
Query: 569 NVNVADLWKFTPLHEAA--------------------AKALLQHGADI-NLKNTDGKTAL 607
+VNV FTPL A+ + GA + N + G+TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 608 DLAV 611
LA
Sbjct: 62 HLAA 65
Score = 37.4 bits (88), Expect = 0.017
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVN 241
+P A H ++ +L + +
Sbjct: 223 DRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 37.1 bits (87), Expect = 0.023
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 239 NVNAMDLWQFTPLHEAAS-------------KSRLEVCSLLLSEGAD 272
+VN FTPL A+ + V S + +GA
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS 48
Score = 36.3 bits (85), Expect = 0.043
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 21/79 (26%)
Query: 49 NPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL 108
+ N R FTPL A+ G G+ + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG-----GLETGNSEEEED--------------APAVISDF 42
Query: 109 -AHGADPF-LKNQEGQTPL 125
GA ++ G+T L
Sbjct: 43 IYQGASLHNQTDRTGETAL 61
Score = 34.4 bits (80), Expect = 0.16
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 3/34 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
P A IV L + H + +
Sbjct: 223 DRLPRDIAQER---MHHDIVRLLDLEHHHHHHHH 253
Score = 29.4 bits (67), Expect = 7.3
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 20/65 (30%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
N + + P+ +A+ G G + +D + +
Sbjct: 4 NVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFI 43
Query: 795 SHNAD 799
A
Sbjct: 44 YQGAS 48
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 150 bits (382), Expect = 1e-41
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 52/193 (26%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
N RD R TPL A ++ L+ + + D G T L A + R
Sbjct: 28 RNYRDSYNR--TPLMVACMLGMENAIDKLVENFDKL----EDKDIEGSTALIWAVKNNRL 81
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
++ L LS KG + VN +D +G+ TPL ++
Sbjct: 82 GIAEKL-LS---------------KGSN------------VNTKDFSGK--TPLMWSI-- 109
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
+G+ E++ L++HGANVN +L TPL A+ K LL+ GADI+
Sbjct: 110 -------IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 599 KNTDGKTALDLAV 611
++ G TA A
Sbjct: 163 RDLTGLTAEASAR 175
Score = 124 bits (314), Expect = 1e-32
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 57/201 (28%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L+ A G + +L+ + + +D++G T L +A NR+ + E LL+ G++
Sbjct: 39 LMVACMLGMENAIDKLVE---NFDKLEDKDIEGS--TALIWAVKNNRLGIAEKLLSKGSN 93
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
V N D G TPL + G +++S L L G +
Sbjct: 94 V----NTKDFSGKTPLMWSIIFGYSEMSYFL-LE---------------HGAN------- 126
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
VN R+ G TPL A+ YG E+ + L++ GA+++ DL T
Sbjct: 127 -----VNDRNLEGE--TPLIVAS---------KYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 581 LHEAA-------AKALLQHGA 594
A K +
Sbjct: 171 EASARIFGRQEVIKIFTEVRR 191
Score = 91.7 bits (229), Expect = 3e-21
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
R + E LL+ G++++ +D G PL + FG++++ LLE AN N R+ TP
Sbjct: 78 NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
L A+ G++++ + L GAD ++
Sbjct: 138 LIVASKYGRSEI------VK--------------------------KLLELGADISARDL 165
Query: 120 EGQTPLDL 127
G T
Sbjct: 166 TGLTAEAS 173
Score = 90.9 bits (227), Expect = 5e-21
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 33/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++ ++ L+ + + +D G L A + LL +N NT+D TP
Sbjct: 45 LGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
L + G +++ + +L HGA+ +N
Sbjct: 105 LMWSIIFGYSEM------SY--------------------------FLLEHGANVNDRNL 132
Query: 120 EGQTPL 125
EG+TPL
Sbjct: 133 EGETPL 138
Score = 88.2 bits (220), Expect = 6e-20
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 667 IKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVE 725
+D + L+ AC G + + K + + + K G T L AV + R I E
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKN---NRLGIAE 85
Query: 726 SLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDD 785
L+ KG+++N K+ P+ + G+ ++ LL GA VN ++ G+T L ++
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 786 KTQAVRVLLSHNAD 799
+++ V+ LL AD
Sbjct: 146 RSEIVKKLLELGAD 159
Score = 86.7 bits (216), Expect = 2e-19
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++ +LL GA+++ R+ G PL A +G +++V+ LLE A+ + RD T
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 61 LHEAAAKGKTDV 72
A G+ +V
Sbjct: 171 EASARIFGRQEV 182
Score = 86.3 bits (215), Expect = 3e-19
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 1062 HNVKHGANV--NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VR 1118
++ + N D + TPL A G + + L+++ K+ +G+T L V+
Sbjct: 18 KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVK 77
Query: 1119 EGDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS 1165
+++ L G + L+ + G LL N+N R+ +G
Sbjct: 78 NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-- 135
Query: 1166 TPLHLAA 1172
TPL +A+
Sbjct: 136 TPLIVAS 142
Score = 84.4 bits (210), Expect = 1e-18
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL ++ + L+ GA++N++N E P+ +A+ G +++ LL LG
Sbjct: 101 GKTPLMWSIIF---GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
A ++ D+ G TA + + +++
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 83.2 bits (207), Expect = 3e-18
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ G+NVN D TPL + G +++ LL+HGA+ + +N +G TP
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP---------- 137
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
L+ A+K G V+KLL +I+ RD G T A
Sbjct: 138 ----------LIVASKYGRSEIVKKLLELGADISARDLTGL--TAEASAR 175
Score = 77.0 bits (191), Expect = 5e-16
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PL + +G+ E++ L++ GANVN +L TPL A+ R E+ LL GAD +
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 277 NCHSKSAIDVA 287
+ +A A
Sbjct: 164 DLTGLTAEASA 174
Score = 76.3 bits (189), Expect = 8e-16
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL AC G + L++ + D+ T L A +RL + LLS+G++
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Score = 76.3 bits (189), Expect = 8e-16
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A + E L+ G+NVN D TPL + E+ LL GA+
Sbjct: 71 ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Score = 71.7 bits (177), Expect = 3e-14
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++HGANVN +L TPL A+ G+++IV+ LL+ GAD S ++ G T G Q
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 1123 DVSDLL 1128
+V +
Sbjct: 181 EVIKIF 186
Score = 71.7 bits (177), Expect = 3e-14
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 39/126 (30%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+++L + RD PL AC G + + L+E +D T
Sbjct: 18 KSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTA 71
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
L A + + AE L + G++ K+
Sbjct: 72 LIWAVKNNRLGI------AE--------------------------KLLSKGSNVNTKDF 99
Query: 120 EGQTPL 125
G+TPL
Sbjct: 100 SGKTPL 105
Score = 70.9 bits (175), Expect = 6e-14
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+ ++ L N ++ P+ +A LG + +D L+
Sbjct: 8 GEIVEKIKD---EKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
K+ D+ G TAL ++++ LLS ++
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Score = 67.8 bits (167), Expect = 6e-13
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
PL A YG E+ + L++ GA+++A DL T A R EV +
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 56.2 bits (137), Expect = 5e-09
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEA 46
YGR ++V+ LL GA I ARD GL +A FG +V+++ E
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 50.9 bits (123), Expect = 4e-07
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G + + + L N D + TPL A L+
Sbjct: 8 GEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Score = 48.5 bits (117), Expect = 2e-06
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
++ GA+++ DL T A G+ +++++ +
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 46.2 bits (111), Expect = 1e-05
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ +K + + LD L N D +T L A+ L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 795 SHNAD 799
+
Sbjct: 56 ENFDK 60
Score = 43.5 bits (104), Expect = 1e-04
Identities = 19/113 (16%), Positives = 28/113 (24%), Gaps = 42/113 (37%)
Query: 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
G+ + D G + L N RD++N TPL A G +
Sbjct: 1 GSHM---DKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENA- 50
Query: 74 IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+ L + K+ EG T L
Sbjct: 51 -----ID--------------------------KLVENFDKLEDKDIEGSTAL 72
Score = 31.2 bits (72), Expect = 1.3
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 217 PLHNACSYGHFEVTEMLIKAGA 238
+A +G EV ++ +
Sbjct: 170 AEASARIFGRQEVIKIFTEVRR 191
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 151 bits (384), Expect = 2e-41
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 54/216 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA-DV 461
L+EA++ + V L+ + + + +D +G T LH AA VV+YLL++G DV
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALV-DPKDAEGS--TCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
N D G+TP+ A + L LL LS KG D
Sbjct: 105 ----NCQDDGGWTPMIWATEYKHVDLVKLL-LS---------------KGSD-------- 136
Query: 522 NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
+N RD LH+AA G ++ E+L+ +++ ++ +PL
Sbjct: 137 ----INIRDNEEN--ICLHWAA---------FSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 582 HEAA-------AKALLQHGADINLKNTDGKTALDLA 610
H AA L +D+ LKN +G+T L A
Sbjct: 182 HIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 144 bits (366), Expect = 5e-39
Identities = 48/194 (24%), Positives = 72/194 (37%), Gaps = 53/194 (27%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
+ R +PLH AA V + L+ GA++ + + TPL EAA+
Sbjct: 4 FKMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANI----DTCSEDQRTPLMEAAENNHL 57
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ L + G V+ +D G T LH AA
Sbjct: 58 EAVKYL-IK---------------AGAL------------VDPKDAEGS--TCLHLAA-- 85
Query: 546 VPLHNACSYGHYEVTEMLVKHGA-NVNVADLWKFTPLHEAA-------AKALLQHGADIN 597
GHYEV + L+ +G +VN D +TP+ A K LL G+DIN
Sbjct: 86 -------KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 598 LKNTDGKTALDLAV 611
+++ + L A
Sbjct: 139 IRDNEENICLHWAA 152
Score = 134 bits (339), Expect = 2e-35
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 52/200 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+K G VV LLS+ VNC+D G TP+ +A Y V +V+ LL+ G+D+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW--TPMIWATEYKHVDLVKLLLSKGSDI- 137
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N D LH AA G ++ +L L+ D
Sbjct: 138 ---NIRDNEENICLHWAAFSGCVDIAEIL-LA---------------AKCD--------- 169
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
++A + G +PLH AA Y+ + + ++V + + TPL
Sbjct: 170 ---LHAVNIHGD--SPLHIAA---------RENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Query: 583 EAA-------AKALLQHGAD 595
A+ A + + D
Sbjct: 216 CASLNSQVWSALQMSKALQD 235
Score = 100 bits (252), Expect = 9e-24
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y D+V+ LL+ G+ I+ RD+ LH A G D+ +LL A + + + +P
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSP 180
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
LH AA + + D + +D LKN+
Sbjct: 181 LHIAARENRYDC------VV--------------------------LFLSRDSDVTLKNK 208
Query: 120 EGQTPLDL 127
EG+TPL
Sbjct: 209 EGETPLQC 216
Score = 97.5 bits (244), Expect = 9e-23
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
V+ GAN++ + TPL EAA + V+ L++ GA K+ +G+T L L ++G
Sbjct: 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY 90
Query: 1123 DVSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
+V L G + ++ A + ++ V+ LL+ +IN RD + L
Sbjct: 91 EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN--ICL 148
Query: 1169 HLAA 1172
H AA
Sbjct: 149 HWAA 152
Score = 95.9 bits (240), Expect = 3e-22
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSD 1126
N + K +PLH AA G DI +L+Q GA+ + D TPL +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 1127 LL------------RGNSALLDAAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLAA 1172
L G++ L AAKKG+ VQ LL+ ++NC+D G TP+ A
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW--TPMIWAT 119
Query: 1173 GEKRHL 1178
E +H+
Sbjct: 120 -EYKHV 124
Score = 92.5 bits (231), Expect = 5e-21
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 23/138 (16%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D+ L+ +GA+I + PL A H + V+ L++A A + +D T
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
Query: 61 LHEAAAKGKTDVCIGIYFAEH-----SSKSNQYVYGIGGGTGCPMH-------KDRSCYL 108
LH AA KG +V Y + + + + GG T PM D L
Sbjct: 81 LHLAAKKGHYEVV--QYLLSNGQMDVNCQDD------GGWT--PMIWATEYKHVDLVKLL 130
Query: 109 -AHGADPFLKNQEGQTPL 125
+ G+D +++ E L
Sbjct: 131 LSKGSDINIRDNEENICL 148
Score = 89.8 bits (224), Expect = 5e-20
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 1064 VKHGA-NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ +G +VN D +TP+ A D+V+LLL G+D + ++ + L G
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
D++++L G+S L AA++ V L+ D ++ ++ +G TPL
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE--TPL 214
Query: 1169 HLAA 1172
A+
Sbjct: 215 QCAS 218
Score = 89.8 bits (224), Expect = 5e-20
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+ LH A + I E L+ L+ N +P+H+AA D + L
Sbjct: 144 ENICLHWAA---FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
+ V L + G+T L + + + + + D++
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
Score = 89.4 bits (223), Expect = 5e-20
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D+ E LLA+ +HA + G PLH A D V L L D++ ++ TP
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213
Query: 61 LHEAAAKGKTDV 72
L A+ +
Sbjct: 214 LQCASLNSQVWS 225
Score = 88.2 bits (220), Expect = 2e-19
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TP+ A K +V+ L+ KG+ +N ++ E +H AA G +D+ + LL
Sbjct: 111 GWTPMIWATEY---KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ V++ G + LH AR+++ V + LS ++D
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Score = 86.7 bits (216), Expect = 5e-19
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+H +PLH A + I L++ GA+++ +++ P+ AA+ HL+
Sbjct: 4 FKMEHQN-KRSPLHAAAEA---GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+ L++ GA V+ D G T LH A+ + V+ LLS+
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Score = 82.8 bits (206), Expect = 9e-18
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G T LH A +V+ L+ G +N ++ P+ A + H+D++ LL
Sbjct: 77 GSTCLHLAA---KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
G+ +N+ D LH A +LL+ D
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Score = 81.7 bits (203), Expect = 3e-17
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
TPL A + V+ LI+ GA ++ K+ E +HLAA GH +V+ LL G
Sbjct: 44 QRTPLMEAAEN---NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 765 AK-VNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
VN D G T + V++LLS +D
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Score = 80.9 bits (201), Expect = 5e-17
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A GH ++ ML++AGAN++ Q TPL EAA + LE L+ GA
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Score = 80.9 bits (201), Expect = 5e-17
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ LH A G ++ E+L+ A +++A+++ +PLH AA ++R + L LS +D
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 274 TLHNCHSKSAIDVA 287
TL N ++ + A
Sbjct: 204 TLKNKEGETPLQCA 217
Score = 78.2 bits (194), Expect = 3e-16
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ +++ ++ +PLH AA + + D V L L +D + KN++G TPL
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Query: 1123 DVSDLLRGNSALLDAA 1138
+ + + AL D+A
Sbjct: 224 WSALQM--SKALQDSA 237
Score = 76.7 bits (190), Expect = 1e-15
Identities = 25/58 (43%), Positives = 27/58 (46%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PL A H E + LIKAGA V+ D T LH AA K EV LLS G
Sbjct: 44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Score = 75.5 bits (187), Expect = 4e-15
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P+ A Y H ++ ++L+ G+++N D + LH AA +++ +LL+ D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Score = 73.2 bits (181), Expect = 2e-14
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A ++ + + ++V + TPL A+ S++ + D
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 72.8 bits (180), Expect = 3e-14
Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 33/110 (30%)
Query: 17 IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGI 76
PLH A GH D+ +L++A AN +T TPL EAA +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA---- 59
Query: 77 YFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+ YL GA K+ EG T L
Sbjct: 60 --VK--------------------------YLIKAGALVDPKDAEGSTCL 81
Score = 70.9 bits (175), Expect = 1e-13
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGA-NVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G LH A GH+EV + L+ G +VN D +TP+ A +++ LLLS+G+D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 273 PTLHNCHSKSAIDVA 287
+ + + A
Sbjct: 137 INIRDNEENICLHWA 151
Score = 64.4 bits (158), Expect = 2e-11
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+++ +P+H AA+ GH+D+ L++ GA ++ +T L A ++ +AV+ L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 795 SHNAD 799
A
Sbjct: 65 KAGAL 69
Score = 60.5 bits (148), Expect = 4e-10
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
R D V L+ + + ++ G PL A + +A +
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 56.7 bits (138), Expect = 7e-09
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 568 ANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
N + K +PLH AA L+Q GA+I+ + D +T L A
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA 52
Score = 45.5 bits (109), Expect = 4e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 238 ANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
N + +PLH AA +++C +L+ GA+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN 36
Score = 38.2 bits (90), Expect = 0.010
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGAN 239
G PL A + KA +
Sbjct: 210 GETPLQCASLNSQVWSALQMSKALQD 235
Score = 37.0 bits (87), Expect = 0.023
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 31/78 (39%)
Query: 48 ANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY 107
N +PLH AA G D+C +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDIC-------------HML------------------ 30
Query: 108 LAHGADPFLKNQEGQTPL 125
+ GA+ +++ +TPL
Sbjct: 31 VQAGANIDTCSEDQRTPL 48
Score = 33.9 bits (79), Expect = 0.23
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 767 VNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ ++ LH A +L+ A+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 151 bits (383), Expect = 2e-41
Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 54/217 (24%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGA-DV 461
L A++ RLL + N +D GR TPLH A + V + L+ + A D+
Sbjct: 29 LHLAARYSRSDAAKRLLEASADA-NIQDNMGR--TPLHAAVSADAQGVFQILIRNRATDL 85
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
+A G TPL AA+ + L ++ D
Sbjct: 86 ----DARMHDGTTPLILAARLAVEGMLEDL-IN---------------SHAD-------- 117
Query: 522 NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
VNA D G+ + LH+AA + + + +L+K+GAN ++ + + TPL
Sbjct: 118 ----VNAVDDLGK--SALHWAA---------AVNNVDAAVVLLKNGANKDMQNNREETPL 162
Query: 582 HEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
AA AK LL H A+ ++ + + D+A
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199
Score = 133 bits (338), Expect = 2e-35
Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 52/202 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A V L+ + ++ R DG TPL AA ++E L+ ADV
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLAVEGMLEDLINSHADV- 118
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
NA D G + LH AA + +L L G +
Sbjct: 119 ---NAVDDLGKSALHWAAAVNNVDAAVVL-LK---------------NGAN--------- 150
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ ++ TPL AA G YE ++L+ H AN ++ D P
Sbjct: 151 ---KDMQNNREE--TPLFLAA---------REGSYETAKVLLDHFANRDITDHMDRLPRD 196
Query: 583 EAA-------AKALLQHGADIN 597
A + L ++ +
Sbjct: 197 IAQERMHHDIVRLLDEYNLVRS 218
Score = 102 bits (258), Expect = 1e-24
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 53/180 (29%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L+ A++ ++ L++S + N D G+ + LH+AA N V LL +GA+
Sbjct: 96 LILAARLAVEGMLEDLINSHADV-NAVDDLGK--SALHWAAAVNNVDAAVVLLKNGANK- 151
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ + TPL AA++G + + +L L +
Sbjct: 152 ---DMQNNREETPLFLAAREGSYETAKVL-LD---------------HFAN--------- 183
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ D R P A H+++ +L ++ + LH
Sbjct: 184 ---RDITDHMDR--LPRDIAQ---------ERMHHDIVRLLDEYNLVRS-------PQLH 222
Score = 91.3 bits (228), Expect = 9e-21
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 1064 VKHGANV-NVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ GA++ N D T LH AA ++D + LL+ AD + ++ G TPL V
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70
Query: 1122 QDVSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
Q V +L G + L+ AA+ G ++ L+ + ++N D G+ +
Sbjct: 71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK--SA 128
Query: 1168 LHLAA 1172
LH AA
Sbjct: 129 LHWAA 133
Score = 90.2 bits (225), Expect = 2e-20
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH-LNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
G TPLH AV++ + + + LIR A L+ + + P+ LAA L +L+ L+
Sbjct: 58 GRTPLHAAVSA---DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN VD LG++ALH A + A VLL + A+
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Score = 89.4 bits (223), Expect = 4e-20
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL A + ++E LI A +N + + +H AA + ++D LL+ G
Sbjct: 92 GTTPLILAARL---AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A ++ + +T L AR+ + +VLL H A+
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Score = 88.6 bits (221), Expect = 8e-20
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 527 NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA- 585
N D G T LH AA Y + + L++ A+ N+ D TPLH A
Sbjct: 19 NQTDRTGE--TALHLAA---------RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67
Query: 586 ------AKALLQHGA-DINLKNTDGKTALDLAV 611
+ L+++ A D++ + DG T L LA
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100
Score = 87.9 bits (219), Expect = 1e-19
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ ++E L+ S A ++A DD G LH A + + D +LL+ AN + ++N TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L AA +G + A+ L H A+ + +
Sbjct: 162 LFLAAREGSYET------AK-------------------------VLLDHFANRDITDHM 190
Query: 121 GQTPLDL 127
+ P D+
Sbjct: 191 DRLPRDI 197
Score = 87.5 bits (218), Expect = 2e-19
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G + LH A L++ GA+ + +N P+ LAA G + LL
Sbjct: 125 GKSALHWAAAV---NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTS 801
A ++ D + + VR+L +N S
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 87.1 bits (217), Expect = 2e-19
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 1064 VKHGA-NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+++ A +++ TPL AA ++ L+ AD + + G + L +
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPL 1168
D + +L R + L AA++G+ + LL N + D R P
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR--LPR 195
Query: 1169 HLAA 1172
+A
Sbjct: 196 DIAQ 199
Score = 85.2 bits (212), Expect = 1e-18
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 695 DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL 754
+ N G+T LH A R + L+ A N ++ P+H A
Sbjct: 16 SLHNQTDRT-GETALHLAARY---SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71
Query: 755 DVLDTLLRLGAK-VNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
V L+R A ++ G T L AR + L++ +AD
Sbjct: 72 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Score = 85.2 bits (212), Expect = 1e-18
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 1 YGRKDVVEYLLASGAS-IHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+ V + L+ + A+ + AR G PL A ++ L+ + A+ N D+ +
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AAA D A L +GA+ ++N
Sbjct: 128 ALHWAAAVNNVDA------AV-------------------------VLLKNGANKDMQNN 156
Query: 120 EGQTPL 125
+TPL
Sbjct: 157 REETPL 162
Score = 85.2 bits (212), Expect = 1e-18
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 32/126 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA-NPNTRDNWNFT 59
Y R D + LL + A + +D+ G PLH A S V ++L+ A + + R + T
Sbjct: 35 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PL AA + E + AD +
Sbjct: 95 PLILAARLAVEGM------LE-------------------------DLINSHADVNAVDD 123
Query: 120 EGQTPL 125
G++ L
Sbjct: 124 LGKSAL 129
Score = 84.8 bits (211), Expect = 2e-18
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
D LL +GA+ +++ PL A G + ++LL+ AN + D+ + P
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194
Query: 61 LHEAAAKGKTDV 72
A + D+
Sbjct: 195 RDIAQERMHHDI 206
Score = 76.3 bits (189), Expect = 2e-15
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
LH A + + + +L+K GAN + + + TPL AA + E +LL A+ +
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 277 NCHSKSAIDVA 287
+ + D+A
Sbjct: 188 DHMDRLPRDIA 198
Score = 74.8 bits (185), Expect = 5e-15
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GAN ++ + + TPL AA +G + ++LL H A+ + P D+
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204
Query: 1123 DVSDLLRGNSALLDAAKKG 1141
D+ LL + + G
Sbjct: 205 DIVRLLDEYNLVRSPQLHG 223
Score = 74.0 bits (183), Expect = 9e-15
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD--PT 274
PL A G +E ++L+ AN + D P A + ++ LL P
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Query: 275 LH 276
LH
Sbjct: 221 LH 222
Score = 73.6 bits (182), Expect = 1e-14
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PL A + E LI + A+VNA+D + LH AA+ + ++ +LL GA+
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Score = 72.8 bits (180), Expect = 2e-14
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G LH A Y + + L++A A+ N D TPLH A S V +L+ A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Score = 70.5 bits (174), Expect = 1e-13
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 721 KAIVESLIRKGAHL-NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALH 779
A++ I +GA L N+ ++ +HLAA D LL A N+ D +G+T LH
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63
Query: 780 RTARDDKTQAVRVLLSHNAD 799
D ++L+ + A
Sbjct: 64 AAVSADAQGVFQILIRNRAT 83
Score = 67.8 bits (167), Expect = 1e-12
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGA-NVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A S V ++LI+ A +++A TPL AA + + L++ AD
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 273 PTLHNCHSKSA 283
+ KSA
Sbjct: 118 VNAVDDLGKSA 128
Score = 62.8 bits (154), Expect = 5e-11
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
G + + LL A+ D P A H D+VRLL E + + + +
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 61.3 bits (150), Expect = 2e-10
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 1088 GKADIVRLLLQHGAD-PSKKNRDGATPLDL-VREGDQDVSDLL------------RGNSA 1133
++ + GA ++ +R G T L L R D + L G +
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 1134 LLDAAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLAA 1172
L A G Q L+ A +++ R G TPL LAA
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAA 100
Score = 57.0 bits (139), Expect = 5e-09
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 225 GHFEVTEMLIKAGANV-NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
V I GA++ N D T LH AA SR + LL AD
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 51
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 150 bits (382), Expect = 5e-41
Identities = 59/330 (17%), Positives = 91/330 (27%), Gaps = 108/330 (32%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
+ D + A Y L+ G DV DK T LH AA R
Sbjct: 2 MTHIDDYST--WDIVKATQYGIYERCRELVEAGYDV----RQPDKENVTLLHWAAINNRI 55
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
L +S KG V+ STPLH+A
Sbjct: 56 DLVKYY-IS---------------KGAI------------VDQLGGD-LNSTPLHWAT-- 84
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
GH + L+K+GA+ ++ D + +H AA L+ G D+++
Sbjct: 85 -------RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 599 KNTDGKTALDLAVPCTRAVLSGDHKKE--ELL-------EAARMMGGGLHRYTWPLGTTD 649
+ +G T L A H + LL T L
Sbjct: 138 MDQNGMTPLMWAA-------YRTHSVDPTRLLLTFNVSVNLGDKYHK----NT-AL---- 181
Query: 650 IGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTP 708
H A G+ + + L + V+ ++ G++
Sbjct: 182 ------------------------HW---AVLAGNTTVISLLLEAGANVDAQNIK-GESA 213
Query: 709 LHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
L A K ++ L N
Sbjct: 214 LDLAK---QRKNVWMINHLQEARQAKGYDN 240
Score = 149 bits (379), Expect = 1e-40
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 58/220 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L A+ + +V +S IV+ D STPLH+A +++V L+ +GAD
Sbjct: 46 LHWAAINNRIDLVKYYIS---KGAIVDQLGGDLN-STPLHWATRQGHLSMVVQLMKYGAD 101
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
+ D G + +H AAQ G T + A L ++ KG D
Sbjct: 102 P----SLIDGEGCSCIHLAAQFGHTSIVAYL-IA---------------KGQD------- 134
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHY-EVTEMLVKHGANVNVAD-LWKF 578
V+ D G TPL +AA H + T +L+ +VN+ D K
Sbjct: 135 -----VDMMDQNGM--TPLMWAA---------YRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 579 TPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
T LH A LL+ GA+++ +N G++ALDLA
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 149 bits (378), Expect = 1e-40
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 54/218 (24%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+++A++ G L+ + + D + T LH+AA NR+ +V+Y ++ GA V
Sbjct: 13 IVKATQYGIYERCRELVEAGYDV-RQPDKENV--TLLHWAAINNRIDLVKYYISKGAIVD 69
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
TPLH A ++G + L + G D
Sbjct: 70 QLGG---DLNSTPLHWATRQGHLSMVVQL-MK---------------YGAD--------- 101
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ D G + +H AA +GH + L+ G +V++ D TPL
Sbjct: 102 ---PSLIDGEGC--SCIHLAA---------QFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 583 EAA--------AKALLQHGADINLK-NTDGKTALDLAV 611
AA + LL +NL TAL AV
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185
Score = 133 bits (337), Expect = 4e-35
Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 51/205 (24%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A++ G +++V +L+ + D +G + +H AA + ++V YL+A G DV
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGC--SCIHLAAQFGHTSIVAYLIAKGQDV- 135
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ D+ G TPL AA + + DP R L
Sbjct: 136 ---DMMDQNGMTPLMWAAYRTHSV-------------DPTRLLLT--FNVS--------- 168
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
VN D + T LH+A G+ V +L++ GANV+ ++ + L
Sbjct: 169 ---VNLGDKYHKN-TALHWAV---------LAGNTTVISLLLEAGANVDAQNIKGESALD 215
Query: 583 EAA-------AKALLQHGADINLKN 600
A L + N
Sbjct: 216 LAKQRKNVWMINHLQEARQAKGYDN 240
Score = 112 bits (283), Expect = 7e-28
Identities = 53/345 (15%), Positives = 94/345 (27%), Gaps = 120/345 (34%)
Query: 239 NVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSN 298
++ +D + + +A E C L+ G D + + + + A
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA---------- 50
Query: 299 EFKGHCLLEACRQGDPSRVKKFLTSD--VVNFKHPYTGDTPLPGTLLIDLLSDDKEFITV 356
++ + K+ S +V+ TPL
Sbjct: 51 -INNR--ID---------LVKYYISKGAIVDQLGGDLNSTPL--------------HWAT 84
Query: 357 AEEMQATVR---------EHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEAS 407
+ + V D G + + +A + S+V L+ +
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDG---EGCSCIHLAAQFGHT------SIVAY---LI--A 130
Query: 408 KGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGY-NRVAVVEYLLAHGADVHSKDN 466
KG D V+ D +G TPL +AA + V LL V+ D
Sbjct: 131 KGQD--------------VDMMDQNGM--TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Query: 467 ATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTV 526
T LH A G T + +LL L G + V
Sbjct: 175 ---YHKNTALHWAVLAGNTTVISLL-LE---------------AGAN------------V 203
Query: 527 NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
+A++ G + L A + + L +
Sbjct: 204 DAQNIKGE--SALDLAK---------QRKNVWMINHLQEARQAKG 237
Score = 99.8 bits (250), Expect = 2e-23
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL--------- 1114
+K+GA+ ++ D + +H AA G IV L+ G D +++G TPL
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155
Query: 1115 -----DLVREG-DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
L+ ++ D N+AL A GN + LL A N++ ++ +G +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE--SA 213
Query: 1168 LHLAAGEKRHL 1178
L LA +++++
Sbjct: 214 LDLAK-QRKNV 223
Score = 98.3 bits (246), Expect = 6e-23
Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 87/249 (34%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PLH A GH + L+K GA+ + +D + +H AA + + L+++G D +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 277 NCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDT 336
+ + + + A ++ H + D
Sbjct: 139 DQNGMTPLMWAA-----------YRTHSV------------------DPTRL-------- 161
Query: 337 PLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSV 396
LL+ + +V D TAL A +V
Sbjct: 162 ---------LLTFN-----------VSV-NLGDK--YHKNTALHWAVLAGNT------TV 192
Query: 397 VDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLA 456
+ L LL G + V+ +++ G + L A V ++ +L
Sbjct: 193 ISL---LL--EAGAN--------------VDAQNIKGE--SALDLAKQRKNVWMINHLQE 231
Query: 457 HGADVHSKD 465
+
Sbjct: 232 ARQAKGYDN 240
Score = 96.3 bits (241), Expect = 3e-22
Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 27/159 (16%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +V L+ GA D G +H A FGH +V L+ + + D TP
Sbjct: 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 61 LHEAAAKG-KTDVC-----IGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCY 107
L AA + D + T +H
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFN---VSVNLGDK-----YHKNT--ALHWAVLAGNTTVISL 195
Query: 108 L-AHGADPFLKNQEGQTPLDLTVAE---DVRSLLQDAMA 142
L GA+ +N +G++ LDL + + LQ+A
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 93.7 bits (234), Expect = 2e-21
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 34/127 (26%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
R D+V+Y ++ GA + D PLH A GH +V L++ A+P+ D +
Sbjct: 52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKN 118
+H AA G T + YL A G D + +
Sbjct: 112 CIHLAAQFGHTSI------VA--------------------------YLIAKGQDVDMMD 139
Query: 119 QEGQTPL 125
Q G TPL
Sbjct: 140 QNGMTPL 146
Score = 92.5 bits (231), Expect = 5e-21
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 32/126 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN-WNFT 59
YG + L+ +G + D + LH A D+V+ + A + N T
Sbjct: 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
PLH A +G + + + +GADP L +
Sbjct: 79 PLHWATRQGHLSMVV-------------------------------QLMKYGADPSLIDG 107
Query: 120 EGQTPL 125
EG + +
Sbjct: 108 EGCSCI 113
Score = 91.7 bits (229), Expect = 1e-20
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 1064 VKHGANVNVADL-WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ GA V+ TPLH A +G +V L+++GADPS + +G + + L + G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 1122 QDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTP 1167
+ L G + L+ AA + + +LL ++N D +N T
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN-TA 180
Query: 1168 LHLAAGEKRHL 1178
LH A +
Sbjct: 181 LHWAV-LAGNT 190
Score = 90.2 bits (225), Expect = 4e-20
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 1069 NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDL 1127
++ D + + +A G + R L++ G D + +++ T L D+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 1128 L-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
++ L A ++G+L V +L+ + + D +G + +HLAA
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC--SCIHLAA 117
Score = 87.9 bits (219), Expect = 2e-19
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
V+ TPLH A ++V L++ GA + + E + IHLAA GH +
Sbjct: 68 VDQLGGDLNSTPLHWATRQ---GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTA-RDDKTQAVRVLLSHNAD 799
+ L+ G V+++D G T L A R R+LL+ N
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Score = 81.7 bits (203), Expect = 3e-17
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+ A L+ G + + +KE + +H AA +D++ + G
Sbjct: 9 STWDIVKATQY---GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 765 AKVNLVDV-LGQTALHRTARDDKTQAVRVLLSHNAD 799
A V+ + L T LH R V L+ + AD
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Score = 80.2 bits (199), Expect = 9e-17
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKEL-LAPIHLAADLGHLDVLDTLLRL 763
G TPL A + L+ +N +K +H A G+ V+ LL
Sbjct: 142 GMTPLMWAAYRTH--SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA V+ ++ G++AL + + L
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 78.6 bits (195), Expect = 3e-16
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ A YG +E L++AG +V D T LH AA +R+++ +S+GA
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
Score = 74.4 bits (184), Expect = 8e-15
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 1064 VKHGANVNVAD-LWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ 1122
+ +VN+ D K T LH A G ++ LLL+ GA+ +N G + LDL
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL------ 216
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRD 1159
A ++ N+ + L A D
Sbjct: 217 --------------AKQRKNVWMINHLQEARQAKGYD 239
Score = 74.0 bits (183), Expect = 1e-14
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
LH A G+ V +L++AGANV+A ++ + L A + + + + L
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 72.1 bits (178), Expect = 5e-14
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 214 GLVPLHNACSYGH-FEVTEMLIKAGANVNAMD-LWQFTPLHEAASKSRLEVCSLLLSEGA 271
G+ PL A H + T +L+ +VN D + T LH A V SLLL GA
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201
Query: 272 DPTLHNCHSKSAIDVA 287
+ N +SA+D+A
Sbjct: 202 NVDAQNIKGESALDLA 217
Score = 64.0 bits (157), Expect = 3e-11
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
G V+ LL +GA++ A++ G L A + ++ L EA DN
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA-KGYDN 240
Score = 63.6 bits (156), Expect = 3e-11
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 676 LLEACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
L+ A + + L + V N Y +T LH AV + ++ L+ GA
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLA---GNTTVISLLLEAGA 201
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
+++ +N + + + LA ++ +++ L
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 63.2 bits (155), Expect = 5e-11
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 733 HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRV 792
H+ + I A G + L+ G V D T LH A +++ V+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 793 LLSHNAD 799
+S A
Sbjct: 61 YISKGAI 67
Score = 58.2 bits (142), Expect = 3e-09
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
++ GANV+ ++ + L A + ++ L + N
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 54.7 bits (133), Expect = 3e-08
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 569 NVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
++ D + + +A + L++ G D+ + + T L A
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA 49
Score = 38.6 bits (91), Expect = 0.006
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 31/77 (40%)
Query: 49 NPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL 108
+ D+++ + +A G + C + + +
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERC-------------REL------------------V 29
Query: 109 AHGADPFLKNQEGQTPL 125
G D ++E T L
Sbjct: 30 EAGYDVRQPDKENVTLL 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 149 bits (379), Expect = 8e-41
Identities = 54/229 (23%), Positives = 78/229 (34%), Gaps = 50/229 (21%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LL A+K D+ +++LL V+ R G T LH AA Y+ + L+ ++
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGE--TALHIAALYDNLEAAMVLMEAAPELV 64
Query: 463 SKD-NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
+ + G T LH A L L L+ +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRAL-LA---------------RGAS-------- 100
Query: 522 NPQTVNARDTAGRKSTPLHFAA--GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFT 579
V+AR T H G PL A G E+ +L++HGA++ D T
Sbjct: 101 ----VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 580 PLHEAA-----------AKALLQHGADINLK------NTDGKTALDLAV 611
LH LL + +LK N G T LA
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Score = 126 bits (320), Expect = 6e-33
Identities = 40/225 (17%), Positives = 69/225 (30%), Gaps = 63/225 (28%)
Query: 406 ASKGGDMTVVTRLLSSCPHI----VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADV 461
A+ ++ L+ + P + + +G+ T LH A V +V LLA GA V
Sbjct: 44 AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ--TALHIAVINQNVNLVRALLARGASV 101
Query: 462 HSKDN---------ATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGG 512
++ +G PL AA G ++ LL + G
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-IE---------------HGA 145
Query: 513 DLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNV 572
D + A+D+ G T LH ++ +L+ + ++
Sbjct: 146 D------------IRAQDSLGN--TVLHILI-----LQPNKTFACQMYNLLLSYDGGDHL 186
Query: 573 ADLWK------FTPLHEAA-------AKALLQHGADINLKNTDGK 604
L TP A + L+Q I +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 94.2 bits (235), Expect = 1e-21
Identities = 43/227 (18%), Positives = 67/227 (29%), Gaps = 63/227 (27%)
Query: 375 GYTALQVAGENSKK------------LLQEPPSVVDLESQ--LLEASKGGDMTVVTRLLS 420
G TAL +A L+ EP + E Q L A ++ +V LL+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 421 SCPH--IVNCRDLDGRHS-----------TPLHFAAGYNRVAVVEYLLAHGADVHSKDNA 467
V+ R PL FAA +V L+ HGAD+ A
Sbjct: 97 ---RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI----RA 149
Query: 468 TDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVN 527
D G T LH + + + L G +
Sbjct: 150 QDSLGNTVLHILILQPNKTFAC-----------QMYNLL-LSYDGG------------DH 185
Query: 528 ARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+ + GL P A G+ + + L++ ++ A
Sbjct: 186 LKSLELVPN-----NQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227
Score = 94.2 bits (235), Expect = 1e-21
Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 71/258 (27%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANV-----NAMDLWQFTPLHEAASKSRLEVCSLLLS 268
G LH A Y + E +L++A + + T LH A + + LL+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 269 EGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNF 328
GA SA + + H L A G V+
Sbjct: 97 RGASV--------SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR---------- 138
Query: 329 KHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKK 388
LLI E A +R G T L + K
Sbjct: 139 -------------LLI--------------EHGADIRAQDSLG----NTVLHILILQPNK 167
Query: 389 LLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRV 448
+ LL S G + + + + G TP A +
Sbjct: 168 ------TFACQMYNLL-LSYDGGDHLKS--------LELVPNNQGL--TPFKLAGVEGNI 210
Query: 449 AVVEYLLAHGADVHSKDN 466
+ ++L+ + + +
Sbjct: 211 VMFQHLMQKRKHIAAAHH 228
Score = 84.6 bits (210), Expect = 2e-18
Identities = 31/165 (18%), Positives = 48/165 (29%), Gaps = 63/165 (38%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
+PL AA++ Q + L +G + V+ R
Sbjct: 3 WESPLLLAAKENDVQALSKLLKF---------------EGCE------------VHQRGA 35
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV-----NVADLWKFTPLHEAA- 585
G T LH AA Y + E +L++ + T LH A
Sbjct: 36 MGE--TALHIAA---------LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI 84
Query: 586 ------AKALLQHGADINLKNTD-------------GKTALDLAV 611
+ALL GA ++ + T G+ L A
Sbjct: 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Score = 83.0 bits (206), Expect = 9e-18
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 34/140 (24%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD-----PSKKNRDGATPLDL-VR 1118
G V+ T LH AA + +L++ + + + +G T L + V
Sbjct: 25 FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI 84
Query: 1119 EGDQDVSDLL-------------------------RGNSALLDAAKKGNLGRVQKLLTAD 1153
+ ++ L G L AA G+ V+ L+
Sbjct: 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
Query: 1154 -NINCRDAQGRNSTPLHLAA 1172
+I +D+ G T LH+
Sbjct: 145 ADIRAQDSLGN--TVLHILI 162
Score = 81.5 bits (202), Expect = 3e-17
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 46/146 (31%)
Query: 1 YGRKDVVEYLLASGASIHARDDG-------------GLHPLHNACSFGHADVVRLLLEAD 47
++V LLA GAS+ AR G G HPL A G ++VRLL+E
Sbjct: 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
Query: 48 ANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY 107
A+ +D+ T LH + +Y +
Sbjct: 145 ADIRAQDSLGNTVLHILILQPNKTFACQMY---------------------------NLL 177
Query: 108 LAHGAD------PFLKNQEGQTPLDL 127
L++ + N +G TP L
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKL 203
Score = 80.3 bits (199), Expect = 7e-17
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
++PL A +A+ + L +G ++++ +H+AA +L+ L+
Sbjct: 3 WESPLLLAAK--ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 765 AKV-----NLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ GQTALH + VR LL+ A
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100
Score = 80.3 bits (199), Expect = 8e-17
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLA-------------PIHLAA 749
Y G T LH AV + + +V +L+ +GA ++ + + P+ AA
Sbjct: 73 YEGQTALHIAVIN---QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 750 DLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDK----TQAVRVLLSHNAD 799
+G +++ L+ GA + D LG T LH Q +LLS++
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Score = 79.2 bits (196), Expect = 2e-16
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 26/145 (17%)
Query: 676 LLEACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGA 732
LL A ++ D + K L +V + + G+T LH A L+
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEV-HQRGAM-GETALHIAALY---DNLEAAMVLMEAAP 61
Query: 733 -----HLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVD-------------VLG 774
+ + E +H+A +++++ LL GA V+ G
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 775 QTALHRTARDDKTQAVRVLLSHNAD 799
+ L A + VR+L+ H AD
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGAD 146
Score = 76.5 bits (189), Expect = 1e-15
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 32/148 (21%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN-----PNTRDNWNF 58
+ + + L G +H R G LH A + + + +L+EA +
Sbjct: 17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76
Query: 59 TPLHEAAAKGKTDVCIGIYFAEH--------SSKSNQYVYGIGGGTGCPM---------- 100
T LH A ++ S+++ V+
Sbjct: 77 TALHIAVINQNVNL------VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130
Query: 101 --HKDRSCYL-AHGADPFLKNQEGQTPL 125
++ L HGAD ++ G T L
Sbjct: 131 VGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 76.5 bits (189), Expect = 2e-15
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV----LD 758
Y G+ PL A + IV LI GA + ++ +H+ + +
Sbjct: 119 YYGEHPLSFAACV---GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Query: 759 TLLRLGAKVN------LVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
LL + + + G T + + L+
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Score = 70.3 bits (173), Expect = 2e-13
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 37/138 (26%)
Query: 1064 VKHGANVNVAD-------------LWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDG 1110
+ GA+V+ + PL AA G +IVRLL++HGAD ++ G
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 1111 ATPLDL-VREGDQDV----SDLL------------------RGNSALLDAAKKGNLGRVQ 1147
T L + + + ++ +LL +G + A +GN+ Q
Sbjct: 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 1148 KLLTAD-NINCRDAQGRN 1164
L+ +I +
Sbjct: 215 HLMQKRKHIAAAHHHHHH 232
Score = 69.6 bits (171), Expect = 3e-13
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 213 LGLVPLHNACSYGHFE-VTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
+ PL A + ++++L G V+ T LH AA LE +L+
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 272 DPTLHNCHSK 281
+ S+
Sbjct: 62 ELVFEPMTSE 71
Score = 68.0 bits (167), Expect = 1e-12
Identities = 24/133 (18%), Positives = 34/133 (25%), Gaps = 33/133 (24%)
Query: 365 REHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPH 424
N G L A + +V L L+ G D
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSE------EIVRL---LI--EHGAD------------- 146
Query: 425 IVNCRDLDGRHSTPLHFAAGYNRVAVV----EYLLAHGADVHSKD--NATDKWGFTPLHE 478
+ +D G T LH LL++ H K + G TP
Sbjct: 147 -IRAQDSLGN--TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 479 AAQKGRTQLSALL 491
A +G + L
Sbjct: 204 AGVEGNIVMFQHL 216
Score = 64.2 bits (157), Expect = 2e-11
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 31/125 (24%)
Query: 1079 TPLHEAAAKGKADIV-RLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL-------- 1128
+PL AA + + +LL G + ++ G T L + + + + +L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 1129 ---------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS-----------TP 1167
G +AL A N+ V+ LL +++ R P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 1168 LHLAA 1172
L AA
Sbjct: 125 LSFAA 129
Score = 52.6 bits (127), Expect = 2e-07
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 705 GDTPLHCAVTSPYPK-RKAIVESLIRKGAHLNEKNKELLA------PIHLAADLGHLDVL 757
G+T LH + P + L+ + K+ EL+ P LA G++ +
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 758 DTLLRLGAKVNLVDVLGQ 775
L++ +
Sbjct: 214 QHLMQKRKHIAAAHHHHH 231
Score = 43.4 bits (103), Expect = 2e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 1128 LRGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAA 1172
+ S LL AAK+ ++ + KLL + ++ R A G T LH+AA
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE--TALHIAA 45
Score = 33.0 bits (76), Expect = 0.39
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLH 26
G + ++L+ I A H
Sbjct: 207 EGNIVMFQHLMQKRKHIAAAHHHHHH 232
Score = 30.7 bits (70), Expect = 2.8
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 772 VLGQTALHRTARDDKTQAVRVLL-SHNAD 799
++ ++ L A+++ QA+ LL +
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCE 29
Score = 29.5 bits (67), Expect = 5.2
Identities = 8/67 (11%), Positives = 14/67 (20%), Gaps = 30/67 (44%)
Query: 59 TPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKN 118
+PL AA + + G + +
Sbjct: 5 SPLLLAAKENDVQA-LSKLL-----------------------------KFEGCEVHQRG 34
Query: 119 QEGQTPL 125
G+T L
Sbjct: 35 AMGETAL 41
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 142 bits (361), Expect = 1e-38
Identities = 39/252 (15%), Positives = 74/252 (29%), Gaps = 66/252 (26%)
Query: 375 GYTALQVA-----GENSKKLLQEPPSVV----DLESQLLEASKGGDMTVVTRLLSSCPHI 425
G + A +L E ++ ++ + + G ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN------Y 65
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
V + PLH AA ++ + L + V N DK G T L+ A G
Sbjct: 66 VAEQAESID--NPLHEAAKRGNLSWLRECLDNRVGV----NGLDKAGSTALYWACHGGHK 119
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+ +L + +N ++ G T LH AA
Sbjct: 120 DIVEML-FTQPNIE--------------------------LNQQNKLGD--TALHAAA-- 148
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
G+ ++ ++L+ GA ++ ++ K A K A L
Sbjct: 149 -------WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201
Query: 599 KNTDGKTALDLA 610
N + + +
Sbjct: 202 SNAEDYLDDEDS 213
Score = 121 bits (306), Expect = 3e-31
Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 51/223 (22%)
Query: 375 GYTALQVAGENSKKLLQEPPSV----VDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRD 430
T + L V +++ L EA+K G+++ + L + VN D
Sbjct: 45 SDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLD 103
Query: 431 LDGRHSTPLHFAAGYNRVAVVEYLLAH-GADVHSKDNATDKWGFTPLHEAAQKGRTQLSA 489
G T L++A +VE L ++ N +K G T LH AA KG +
Sbjct: 104 KAGS--TALYWACHGGHKDIVEMLFTQPNIEL----NQQNKLGDTALHAAAWKGYADIVQ 157
Query: 490 LLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
LL L+ KG + R+ + A
Sbjct: 158 LL-LA---------------KGAR------------TDLRNIEKK--LAFDMAT------ 181
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQH 592
+ + + A +++ + ++ + H
Sbjct: 182 ---NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221
Score = 118 bits (299), Expect = 3e-30
Identities = 39/252 (15%), Positives = 64/252 (25%), Gaps = 50/252 (19%)
Query: 536 STPLHFAA--GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK--ALLQ 591
S P G V + A + L ++ T + +K L
Sbjct: 2 SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61
Query: 592 HGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTD 649
+ + L A + E L+
Sbjct: 62 PSNYVAEQAESIDNPLHEAA-------KRGNLSWLRECLDNR----------------VG 98
Query: 650 IGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSD--VVNFKHPYTGDT 707
+ D+ L AC G V+ T +N ++ GDT
Sbjct: 99 VN---------------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL-GDT 142
Query: 708 PLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKV 767
LH A + IV+ L+ KGA + +N E +A + +L A
Sbjct: 143 ALHAAA---WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199
Query: 768 NLVDVLGQTALH 779
L +
Sbjct: 200 TLSNAEDYLDDE 211
Score = 103 bits (260), Expect = 5e-25
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 32/139 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLL-EADANPNTRDNWNFT 59
G + L + ++ D G L+ AC GH D+V +L + + N ++ T
Sbjct: 83 RGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT 142
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AA KG D+ Q + LA GA L+N
Sbjct: 143 ALHAAAWKGYADIV-------------QLL------------------LAKGARTDLRNI 171
Query: 120 EGQTPLDLTVAEDVRSLLQ 138
E + D+ SLL+
Sbjct: 172 EKKLAFDMATNAACASLLK 190
Score = 94.6 bits (236), Expect = 7e-22
Identities = 39/289 (13%), Positives = 76/289 (26%), Gaps = 86/289 (29%)
Query: 206 PSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSL 265
P + V G V + A + L ++ + T + SK R
Sbjct: 4 PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG---- 59
Query: 266 LLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV 325
L + L EA ++G+ S +++ L + V
Sbjct: 60 -LIPSNYVAEQAESIDNP---------------------LHEAAKRGNLSWLRECLDNRV 97
Query: 326 -VNFKHPYTGDTPL-----PG-----TLLIDLLSDDKEFITVAEEMQATVREHRDNGQSG 374
VN G T L G +L + + ++
Sbjct: 98 GVNGLDKA-GSTALYWACHGGHKDIVEMLFT-------------QPNIEL-NQQNK---L 139
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G TAL A +V L LL +KG + R+++ +
Sbjct: 140 GDTALHAAAWKGYA------DIVQL---LL--AKGAR--------------TDLRNIEKK 174
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
A ++++ A ++ + ++ +
Sbjct: 175 --LAFDMATNAACASLLKKKQGTDAVR----TLSNAEDYLDDEDSDLEH 217
Score = 90.4 bits (225), Expect = 2e-20
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDV 1124
+ +N + T LH AA KG ADIV+LLL GA +N + D+
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM-------- 179
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
A ++K D +A+ + E
Sbjct: 180 ------------ATNAACASLLKKKQGTDAVRTLSNAEDY--LDDEDSDLE 216
Score = 88.1 bits (219), Expect = 1e-19
Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 32/126 (25%)
Query: 1 YGRKDVVEYLLA-SGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G KD+VE L ++ ++ G LH A G+AD+V+LLL A + R+
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKL 175
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
A + A L N
Sbjct: 176 AFDMATNAACASLL-------------------------------KKKQGTDAVRTLSNA 204
Query: 120 EGQTPL 125
E
Sbjct: 205 EDYLDD 210
Score = 86.9 bits (216), Expect = 3e-19
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 19/156 (12%)
Query: 1034 VDQLSMAGG-LETGTKKKKKNMYYGTLTPH-NVKHGANVNVADLWKFTPLHEAAAKGKAD 1091
D+L + G + T N + GT + V PLHEAA +G
Sbjct: 28 PDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLS 87
Query: 1092 IVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL-------------RGNSALLDA 1137
+R L + + ++ G+T L G +D+ ++L G++AL A
Sbjct: 88 WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147
Query: 1138 AKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
A KG VQ LL + R+ + + +A
Sbjct: 148 AWKGYADIVQLLLAKGARTDLRNIEKK--LAFDMAT 181
Score = 82.7 bits (205), Expect = 8e-18
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D+V+ LLA GA R+ A + A +++ DA + ++
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLD 209
Query: 61 LHEAAAKG 68
++ +
Sbjct: 210 DEDSDLEH 217
Score = 77.3 bits (191), Expect = 7e-16
Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 14/110 (12%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL---------DLVREGDQDVSDLLR 1129
+ A + L D T L+
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA-ES 72
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHL 1178
++ L +AAK+GNL +++ L +N D G T L+ A H
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS--TALYWAC-HGGHK 119
Score = 74.2 bits (183), Expect = 6e-15
Identities = 21/146 (14%), Positives = 35/146 (23%), Gaps = 42/146 (28%)
Query: 474 TPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQ-TVNARDTA 532
P + + G+ ++F A + +L + +
Sbjct: 3 KPPPKPVKPGQV------------------KVFRALYTFEPRTPDELYIEEGDIIYITDM 44
Query: 533 GRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------- 585
S G + V PLHEAA
Sbjct: 45 SDT-----------NWWKGTSKGR-----TGLIPSNYVAEQAESIDNPLHEAAKRGNLSW 88
Query: 586 AKALLQHGADINLKNTDGKTALDLAV 611
+ L + +N + G TAL A
Sbjct: 89 LRECLDNRVGVNGLDKAGSTALYWAC 114
Score = 64.6 bits (158), Expect = 1e-11
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
+ GA ++ ++ K A A +++ A + N +
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Score = 62.3 bits (152), Expect = 9e-11
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 23/118 (19%)
Query: 18 HARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIY 77
G + A L + + + + T + +KG+T + Y
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65
Query: 78 FAEHSSKSNQYVYGIGGGTGCPMHKDRSCY----------LAHGADPFLKNQEGQTPL 125
AE + P+H + L + ++ G T L
Sbjct: 66 VAEQAES---------IDN--PLH--EAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110
Score = 46.1 bits (110), Expect = 2e-05
Identities = 5/51 (9%), Positives = 11/51 (21%), Gaps = 3/51 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD 755
A + ++++ A N E + H
Sbjct: 173 KKLAFDMATNA---ACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 42.2 bits (100), Expect = 5e-04
Identities = 8/63 (12%), Positives = 16/63 (25%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIV 803
+ A D L + + + T + +T + SI
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESID 74
Query: 804 SLL 806
+ L
Sbjct: 75 NPL 77
Score = 39.9 bits (94), Expect = 0.003
Identities = 2/38 (5%), Positives = 9/38 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHAD 38
+++ + A + ++ H
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 29.1 bits (66), Expect = 6.7
Identities = 1/25 (4%), Positives = 8/25 (32%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKG 1088
A +++ + ++ +
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEH 217
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 139 bits (352), Expect = 4e-38
Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 52/183 (28%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPS 496
L AA + + LL + +V NA + +G T L + G +++ L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNV----NAQNGFGRTALQ-VMKLGNPEIARRL-LL-- 58
Query: 497 AANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
+G + + +D G +H AA G
Sbjct: 59 -------------RGAN------------PDLKDRTGF--AVIHDAA---------RAGF 82
Query: 557 YEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGA-DINLKNTDGKTALD 608
+ + L++ A+VN+ D PLH AA + L++H A ++ +N G TA D
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 609 LAV 611
LA
Sbjct: 143 LAR 145
Score = 122 bits (309), Expect = 3e-32
Identities = 50/200 (25%), Positives = 68/200 (34%), Gaps = 55/200 (27%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+ GD+ +T LL + ++ N ++ GR T L + LL GA+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNV-NAQNGFGR--TALQVMK-LGNPEIARRLLLRGANP- 63
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ D+ GF +H+AA+ G L L D
Sbjct: 64 ---DLKDRTGFAVIHDAARAGFLDTLQTL-LE---------------FQAD--------- 95
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGA-NVNVADLWKFTPL 581
VN D G PLH AA GH V E LVKH A NV + T
Sbjct: 96 ---VNIEDNEGN--LPLHLAA---------KEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 582 HEAA-------AKALLQHGA 594
A + +GA
Sbjct: 142 DLARLYGRNEVVSLMQANGA 161
Score = 104 bits (262), Expect = 6e-26
Identities = 42/194 (21%), Positives = 64/194 (32%), Gaps = 70/194 (36%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G TALQV + + + LL +G + + +D G
Sbjct: 38 GRTALQVMKLGNPE-------IARR---LL--LRGAN--------------PDLKDRTGF 71
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLS 494
+H AA + ++ LL ADV N D G PLH AA++G ++ L +
Sbjct: 72 --AVIHDAARAGFLDTLQTLLEFQADV----NIEDNEGNLPLHLAAKEGHLRVVEFL-VK 124
Query: 495 PSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSY 554
+A+N V R+ G T A Y
Sbjct: 125 HTASN--------------------------VGHRNHKGD--TACDLAR---------LY 147
Query: 555 GHYEVTEMLVKHGA 568
G EV ++ +GA
Sbjct: 148 GRNEVVSLMQANGA 161
Score = 103 bits (260), Expect = 1e-25
Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 48/151 (31%)
Query: 468 TDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVN 527
+ WG L AA +G + L L + VN
Sbjct: 2 AEPWG-NELASAAARGDLEQLTSL-LQ---------------NNVN------------VN 32
Query: 528 ARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-- 585
A++ GR T L G+ E+ L+ GAN ++ D F +H+AA
Sbjct: 33 AQNGFGR--TALQVMK----------LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80
Query: 586 -----AKALLQHGADINLKNTDGKTALDLAV 611
+ LL+ AD+N+++ +G L LA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Score = 89.4 bits (223), Expect = 9e-21
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 34/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G + + LL + +++A++ G L G+ ++ R LL ANP+ +D F
Sbjct: 15 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAV 73
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
+H+AA G D + L AD +++
Sbjct: 74 IHDAARAGFLDT------LQ--------------------------TLLEFQADVNIEDN 101
Query: 120 EGQTPL 125
EG PL
Sbjct: 102 EGNLPL 107
Score = 88.2 bits (220), Expect = 3e-20
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++ LL GA+ +D G +H+A G D ++ LLE A+ N DN P
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 61 LHEAAAKGKTDVC 73
LH AA +G V
Sbjct: 107 LHLAAKEGHLRVV 119
Score = 87.8 bits (219), Expect = 3e-20
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ GAN ++ D F +H+AA G D ++ LL+ AD + ++ +G PL L
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL------- 109
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLT--ADNINCRDAQGRNSTPLHLAA 1172
AAK+G+L V+ L+ A N+ R+ +G T LA
Sbjct: 110 -------------AAKEGHLRVVEFLVKHTASNVGHRNHKGD--TACDLAR 145
Score = 86.3 bits (215), Expect = 1e-19
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
L A +GD ++ L ++V VN ++ + G T L I L+ +GA+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL----GNPEIARRLLLRGANP 63
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ K++ A IH AA G LD L TLL A VN+ D G LH A++ + V L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 795 SHNA 798
H A
Sbjct: 124 KHTA 127
Score = 84.7 bits (211), Expect = 4e-19
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 1072 VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLL--- 1128
+A+ W L AAA+G + + LLQ+ + + +N G T L +++ G+ +++ L
Sbjct: 1 MAEPWG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59
Query: 1129 ---------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G + + DAA+ G L +Q LL ++N D +G PLHLAA
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN--LPLHLAA 111
Score = 84.0 bits (209), Expect = 8e-19
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
L A + SL++ ++N +N + + LG+ ++ LL G
Sbjct: 5 WGNELASAAAR---GDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A +L D G +H AR ++ LL AD
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Score = 83.2 bits (207), Expect = 1e-18
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA-NPNTRDNWNFT 59
G D ++ LL A ++ D+ G PLH A GH VV L++ A N R++ T
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Query: 60 PLHEAAAKGKTDV 72
A G+ +V
Sbjct: 140 ACDLARLYGRNEV 152
Score = 79.3 bits (197), Expect = 3e-17
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G +H A +++L+ A +N ++ E P+HLAA GHL V++ L++
Sbjct: 70 GFAVIHDAA---RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 765 AK-VNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
A V + G TA + + V ++ ++ A
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 74.7 bits (185), Expect = 1e-15
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
+H+A G + + L++ A+VN D PLH AA + L V L+ A
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 72.8 bits (180), Expect = 5e-15
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L G+ E+ L+ GAN + D F +H+AA L+ LL AD
Sbjct: 41 ALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Score = 71.6 bits (177), Expect = 2e-14
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L +A + G E L++ NVNA + + T L E+ LL GA+P
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANP 63
Score = 67.8 bits (167), Expect = 3e-13
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGA-NVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A GH V E L+K A NV + T A R EV SL+ + GA
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 67.0 bits (165), Expect = 6e-13
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA-DPSKKNRDGATPLDLVREGDQ 1122
++ A+VN+ D PLH AA +G +V L++H A + +N G T DL
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL------ 143
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLL 1150
A G V +
Sbjct: 144 --------------ARLYGRNEVVSLMQ 157
Score = 62.8 bits (154), Expect = 2e-11
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 34/106 (32%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80
+ + L +A + G + + LL+ + N N ++ + T L G ++ A
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEI------AR 54
Query: 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L GA+P LK++ G +
Sbjct: 55 --------------------------RLLLRGANPDLKDRTGFAVI 74
Score = 55.1 bits (134), Expect = 7e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 1 YGRKDVVEYLLASGAS-IHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G VVE+L+ AS + R+ G A +G +VV L+ A
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (116), Expect = 2e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1064 VKHGA-NVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
VKH A NV + T A G+ ++V L+ +GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.0 bits (87), Expect = 0.014
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGA 238
G A YG EV ++ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 36.2 bits (85), Expect = 0.020
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGAD 272
L AA++ LE + LL +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVN 30
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 141 bits (357), Expect = 2e-37
Identities = 39/216 (18%), Positives = 58/216 (26%), Gaps = 57/216 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
L A G V LL H V D +P+H AA V V L+A+G +
Sbjct: 73 LFNACVSGSWDCVNLLLQ---HGASVQPES-DLA--SPIHEAARRGHVECVNSLIAYGGN 126
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKL 520
+ + TPL+ A + + L L G D
Sbjct: 127 I----DHKISHLGTPLYLACENQQRACVKKL-LE---------------SGAD------- 159
Query: 521 VNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
VN PLH E+ +L+ GA+ + P
Sbjct: 160 -----VNQGKG------------QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202
Query: 581 LHEAA-----AKALLQHGADINLKNTDGKTALDLAV 611
+ A+ L+ +L
Sbjct: 203 VELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFG 238
Score = 140 bits (355), Expect = 3e-37
Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 51/182 (28%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPS 496
+P+H AA + + L++ G V N +PLHEA G +L L
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAV----NIITADHVSPLHEACLGGHLSCVKIL-LK-- 57
Query: 497 AANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
G VN T PL NAC G
Sbjct: 58 -------------HGAQ------------VNGVTADWH--T---------PLFNACVSGS 81
Query: 557 YEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDL 609
++ +L++HGA+V + +P+HEAA +L+ +G +I+ K + T L L
Sbjct: 82 WDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 610 AV 611
A
Sbjct: 141 AC 142
Score = 128 bits (324), Expect = 5e-33
Identities = 45/291 (15%), Positives = 79/291 (27%), Gaps = 90/291 (30%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ PLH AC GH ++L+K GA VN + TPL A + +LLL GA
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPY 332
+ S + EA R+G V + ++ K +
Sbjct: 96 QPES-DLASP---------------------IHEAARRGHVECVNSLIAYGGNIDHKISH 133
Query: 333 TGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRD------------NGQSGGYTALQ 380
TPL A + R N G + L
Sbjct: 134 -LGTPL---------------------YLACENQQRACVKKLLESGADVNQGKGQDSPLH 171
Query: 381 VAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLH 440
+ + + L L+ G D ++ +G+ P+
Sbjct: 172 AVARTASE------ELACL---LM--DFGAD--------------TQAKNAEGK--RPVE 204
Query: 441 FAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ + + L + + +++ L+
Sbjct: 205 LVPPES--PLAQLFLEREGPP----SLMQLCRLRIRKCFGIQQHHKITKLV 249
Score = 120 bits (303), Expect = 3e-30
Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 64/235 (27%)
Query: 375 GYTALQVAGENSKK-----LLQ---EPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIV 426
+T L A + LLQ DL S + EA++ G + V L++ +I
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI- 127
Query: 427 NCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQ 486
+ + TPL+ A + A V+ LL GADV+ K +PLH A+ +
Sbjct: 128 DHKISHLG--TPLYLACENQQRACVKKLLESGADVN-----QGKGQDSPLHAVARTASEE 180
Query: 487 LSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLV 546
L+ LL + G D A++ G+ P+
Sbjct: 181 LACLL-MD---------------FGAD------------TQAKNAEGK--RPVELVP--- 207
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGA 594
+ ++ ++ ++ L + K +L
Sbjct: 208 ------PESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 105 bits (264), Expect = 3e-25
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ G VN+ +PLHEA G V++LL+HGA + D TPL G
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 1123 DVSDLL-----------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHL 1170
D +LL S + +AA++G++ V L+ NI+ + + TPL+L
Sbjct: 83 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG--TPLYL 140
Query: 1171 AAGEKRHL 1178
A E +
Sbjct: 141 AC-ENQQR 147
Score = 102 bits (258), Expect = 3e-24
Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 47/147 (31%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
++P+HEAA G L +S +G VN
Sbjct: 3 DWSPMHEAAIHGHQLSLRNL-IS---------------QGWA------------VNIITA 34
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
+PLH A C GH ++L+KHGA VN TPL A
Sbjct: 35 DHV--SPLHEA---------CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 586 -AKALLQHGADINLKNTDGKTALDLAV 611
LLQHGA + ++ D + + A
Sbjct: 84 CVNLLLQHGASVQPES-DLASPIHEAA 109
Score = 100 bits (251), Expect = 2e-23
Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 17/134 (12%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + + L++ G +++ + PLH AC GH V++LL+ A N TP
Sbjct: 13 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 72
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYG--------IGGGTGCPMHKDRSCYL-AHG 111
L A G D +H + G H + L A+G
Sbjct: 73 LFNACVSGSWDCV--NLLLQHGASVQPESDLASPIHEAARRG------HVECVNSLIAYG 124
Query: 112 ADPFLKNQEGQTPL 125
+ K TPL
Sbjct: 125 GNIDHKISHLGTPL 138
Score = 98.7 bits (247), Expect = 6e-23
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D V LL GAS+ D P+H A GH + V L+ N + + + TP
Sbjct: 79 SGSWDCVNLLLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 137
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL-AHGA 112
L+ A + E + NQ G G + P+H ++ +C L GA
Sbjct: 138 LYLACENQQRACV--KKLLESGADVNQ---GKGQDS--PLHAVARTASEELACLLMDFGA 190
Query: 113 DPFLKNQEGQTPLDL 127
D KN EG+ P++L
Sbjct: 191 DTQAKNAEGKRPVEL 205
Score = 95.2 bits (238), Expect = 1e-21
Identities = 44/251 (17%), Positives = 76/251 (30%), Gaps = 70/251 (27%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAM-DLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PL NAC G ++ +L++ GA+V DL +P+HEAA + +E + L++ G +
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGN 126
Query: 273 PTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHP 331
H + L AC + VKK L S VN
Sbjct: 127 IDHKISHLGTP---------------------LYLACENQQRACVKKLLESGADVN--QG 163
Query: 332 YTGDTPLPGTLLIDLLSDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGENSKK 388
D+P L + +E +A + A + ++ G +++ S
Sbjct: 164 KGQDSP----LHAVARTASEE---LACLLMDFGADT-QAKNA---EGKRPVELVPPES-- 210
Query: 389 LLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRV 448
L L + G + L
Sbjct: 211 ---------PLAQLFL--EREGP--------------PSLMQLCRL--RIRKCFGIQQHH 243
Query: 449 AVVEYLLAHGA 459
+ + +L
Sbjct: 244 KITKLVLPEDL 254
Score = 93.3 bits (233), Expect = 4e-21
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 34/127 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
++ V+ LL SGA ++ G PLH ++ LL++ A+ ++ P
Sbjct: 144 NQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
+ + L P L
Sbjct: 203 VELVPPESPLAQLF---------------------------------LEREGPPSLMQLC 229
Query: 121 GQTPLDL 127
Sbjct: 230 RLRIRKC 236
Score = 92.1 bits (230), Expect = 1e-20
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 543 AGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGAD 595
+ P+H A +GH L+ G VN+ +PLHEA K LL+HGA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 596 INLKNTDGKTALDLA 610
+N D T L A
Sbjct: 62 VNGVTADWHTPLFNA 76
Score = 91.0 bits (227), Expect = 3e-20
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 20/143 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ +G N++ TPL+ A + V+ LL+ GAD ++ +PL R +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVARTASE 179
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+++ LL G + + L Q L + +
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRL--RIRK 235
Query: 1170 LAAGEKRHLLMCRVTLGKSFLQF 1192
++H + ++ L + QF
Sbjct: 236 CFG-IQQHHKITKLVLPEDLKQF 257
Score = 88.3 bits (220), Expect = 2e-19
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 704 TGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
+ +P+H A + + +LI +G +N + ++P+H A GHL + LL+
Sbjct: 2 SDWSPMHEAA---IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 58
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
GA+VN V T L V +LL H A
Sbjct: 59 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Score = 85.9 bits (214), Expect = 1e-18
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
TPL A S V L++ GA + ++ +L +PIH AA GH++ +++L+ G
Sbjct: 69 WHTPLFNACVS---GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 124
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ T L+ + + V+ LL AD
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Score = 84.8 bits (211), Expect = 4e-18
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
+ EA G ++ ++ VN +PLH A + V+ L++ GA +
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLG---GHLSCVKILLKHGAQV 62
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
N + P+ A G D ++ LL+ GA V + + +H AR + V L+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLI 121
Query: 795 SHNAD 799
++ +
Sbjct: 122 AYGGN 126
Score = 84.0 bits (209), Expect = 7e-18
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+P+H A V SLI G +++ K L P++LA + + LL G
Sbjct: 101 LASPIHEAARR---GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN + LH AR + +L+ AD
Sbjct: 158 ADVN-QGKGQDSPLHAVARTASEELACLLMDFGAD 191
Score = 82.1 bits (204), Expect = 3e-17
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+++ L+ GA A++ G P+ + +L LE + P+
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRI 233
Query: 61 LHEAAAKGKTDVC 73
+ +
Sbjct: 234 RKCFGIQQHHKIT 246
Score = 80.2 bits (199), Expect = 1e-16
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
D+PLH + + L+ GA KN E P+ L L L L
Sbjct: 166 QDSPLHAVA---RTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLERE 220
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
+L+ + + +++L +
Sbjct: 221 GPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 79.4 bits (197), Expect = 3e-16
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
P+H A +GH LI G VN + +PLHEA L +LL GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Score = 79.0 bits (196), Expect = 3e-16
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
+ EA R+G V + ++ K + TPL+ A + +++A V+ L+ GA +
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISH-LGTPLYLACEN---QQRACVKKLLESGADV 160
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
N + K +P+H A ++ L+ GA + G+ + ++ ++ L
Sbjct: 161 N-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFL 217
Query: 795 SHNADTSI 802
S+
Sbjct: 218 EREGPPSL 225
Score = 76.3 bits (189), Expect = 3e-15
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL-------- 1128
++P+HEAA G +R L+ G + D +PL G +L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 1129 ----RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
++ L +A G+ V LL ++ ++ +P+H AA
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLA--SPIHEAA 109
Score = 69.0 bits (170), Expect = 9e-13
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 33/100 (33%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
P+H A GH +R L+ N + +PLHEA G +
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC------VK------ 53
Query: 87 QYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L HGA + TPL
Sbjct: 54 --------------------ILLKHGAQVNGVTADWHTPL 73
Score = 66.3 bits (163), Expect = 7e-12
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P+ + ++ ++ + M L + + ++ L+L E
Sbjct: 199 GKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256
Query: 274 TL 275
L
Sbjct: 257 FL 258
Score = 53.6 bits (130), Expect = 1e-07
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G P+ P + + + + + L H + +L
Sbjct: 199 GKRPVELV-----PPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
Query: 765 AKVNL 769
K L
Sbjct: 254 LKQFL 258
Score = 52.4 bits (127), Expect = 2e-07
Identities = 6/47 (12%), Positives = 11/47 (23%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
+ + L L H + +L+L D
Sbjct: 209 ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 36.6 bits (86), Expect = 0.035
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
S + +AA G+ ++ L++ +N A +PLH A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV--SPLHEAC 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 139 bits (353), Expect = 3e-37
Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 54/217 (24%)
Query: 406 ASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHS 463
A + LL RD G TPLH A +A V L H
Sbjct: 52 AVITNQPEIAEALLG---AGCDPELRDFRGN--TPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 464 KD--NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
AT+ G T LH A+ G + LL +S G D
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELL-VS---------------LGAD-------- 142
Query: 522 NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPL 581
VNA++ + T LH A + ++ +L+K GA+VN ++P
Sbjct: 143 ----VNAQEPCNGR-TALHLAV---------DLQNPDLVSLLLKCGADVNRVTYQGYSPY 188
Query: 582 HEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
+ L Q + + +
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225
Score = 129 bits (327), Expect = 7e-34
Identities = 51/261 (19%), Positives = 82/261 (31%), Gaps = 50/261 (19%)
Query: 537 TPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKAL 589
+ LH A + EV + A +N + + TPLH A A+AL
Sbjct: 10 SFLHLAI-----IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 590 LQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGT 647
L G D L++ G T L LA L ++
Sbjct: 65 LGAGCDPELRDFRGNTPLHLAC-------EQGCLASVGVLTQS----------------- 100
Query: 648 TDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGD 706
C L + + + CL A G V+ ++ VN + P G
Sbjct: 101 --------CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 152
Query: 707 TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK 766
T LH AV + +V L++ GA +N + +P L + L +L +
Sbjct: 153 TALHLAV---DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Query: 767 VNLVDVLGQTALHRTARDDKT 787
+ + + T
Sbjct: 210 NLQMLPESEDEESYDTESEFT 230
Score = 118 bits (297), Expect = 7e-30
Identities = 57/280 (20%), Positives = 86/280 (30%), Gaps = 92/280 (32%)
Query: 217 PLHNACSYGH----FEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
LH A + EV + A +N + Q TPLH A ++ E+ LL G D
Sbjct: 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Query: 273 PTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPY 332
P L + + + H AC QG V
Sbjct: 71 PELRDFRGNTPL------------------HL---ACEQGCL---------ASVGV---- 96
Query: 333 TGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQE 392
L ++ + + G+T L +A +
Sbjct: 97 -------------LTQSC------TTPHLHSILKATNY---NGHTCLHLASIHGYL---- 130
Query: 393 PPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRD-LDGRHSTPLHFAAGYNRVAVV 451
+V+L L+ S G D VN ++ +GR T LH A +V
Sbjct: 131 --GIVEL---LV--SLGAD--------------VNAQEPCNGR--TALHLAVDLQNPDLV 167
Query: 452 EYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
LL GADV N G++P + T++ L
Sbjct: 168 SLLLKCGADV----NRVTYQGYSPYQLTWGRPSTRIQQQL 203
Score = 106 bits (267), Expect = 8e-26
Identities = 54/244 (22%), Positives = 77/244 (31%), Gaps = 65/244 (26%)
Query: 579 TPLHEAA-----------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK--E 625
+ LH A + + A +N +N +T L L AV++ + E
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL------AVITN-QPEIAE 62
Query: 626 ELLEA-ARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGD 684
LL A D ++D L AC QG
Sbjct: 63 ALLGAGC-----------------DP---------------ELRDFRGNTPLHLACEQGC 90
Query: 685 PSRVKKFLTSDVVNFKHP-------YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEK 737
LT Y G T LH A IVE L+ GA +N +
Sbjct: 91 L-ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH---GYLGIVELLVSLGADVNAQ 146
Query: 738 NKEL-LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
+HLA DL + D++ LL+ GA VN V G + T T+ + L
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Query: 797 NADT 800
+
Sbjct: 207 TLEN 210
Score = 95.3 bits (238), Expect = 6e-22
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 50/159 (31%)
Query: 467 ATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV-NPQT 525
+ G + LH A L+ + ++++ +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEV-------------------------IRQVKGDLAF 37
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA 585
+N ++ + TPLH A E+ E L+ G + + D TPLH A
Sbjct: 38 LNFQNNLQQ--TPLHLAV---------ITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 586 -------AKALLQHGAD------INLKNTDGKTALDLAV 611
L Q + N +G T L LA
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Score = 93.8 bits (234), Expect = 2e-21
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 23/130 (17%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
A +N + + TPLH A + +I LL G DP ++ G TPL L +G
Sbjct: 32 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91
Query: 1123 DVSDLL------------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQ-G 1162
+L G++ L A+ G LG V+ L++ ++N ++ G
Sbjct: 92 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 151
Query: 1163 RNSTPLHLAA 1172
R T LHLA
Sbjct: 152 R--TALHLAV 159
Score = 92.2 bits (230), Expect = 7e-21
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Query: 705 GDTPLHCAVTSPYPKRKA-IVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
GD+ LH A+ ++ + A LN +N P+HLA ++ + LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLL 806
G L D G T LH +V VL + S+L
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Score = 85.7 bits (213), Expect = 1e-18
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 32/140 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDG-GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
+G +VE L++ GA ++A++ G LH A + D+V LLL+ A+ N ++
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
P + T + +
Sbjct: 187 PYQLTWGRPSTRIQ-------------------------------QQLGQLTLENLQMLP 215
Query: 120 EGQTPLDLTVAEDVRSLLQD 139
E + + +D
Sbjct: 216 ESEDEESYDTESEFTEFTED 235
Score = 83.0 bits (206), Expect = 1e-17
Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 35/151 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANP------NTRD 54
+ ++ E LL +G RD G PLH AC G V +L ++ P +
Sbjct: 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 55 NWNFTPLHEAAAKGKTDVCIGIYFAEH--------SSKSNQYVYGIGGGTGCPMH----- 101
T LH A+ G + E +++ G T +H
Sbjct: 115 YNGHTCLHLASIHGYLGI------VELLVSLGADVNAQEPCN-----GRT--ALHLAVDL 161
Query: 102 --KDRSCYL-AHGADPFLKNQEGQTPLDLTV 129
D L GAD +G +P LT
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192
Score = 82.6 bits (205), Expect = 1e-17
Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 37/128 (28%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
+V+ + A ++ +++ PLH A ++ LL A +P RD TPLH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 64 AAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFL------K 117
A +G P L
Sbjct: 85 ACEQGCLASV-------------------------------GVLTQSCTTPHLHSILKAT 113
Query: 118 NQEGQTPL 125
N G T L
Sbjct: 114 NYNGHTCL 121
Score = 74.9 bits (185), Expect = 5e-15
Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 30/118 (25%)
Query: 1064 VKHGAN------VNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKK-NRDGATPLDL 1116
+ + + T LH A+ G IV LL+ GAD + + +G T L L
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 1117 VREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAG 1173
A N V LL ++N QG +P L G
Sbjct: 158 --------------------AVDLQNPDLVSLLLKCGADVNRVTYQGY--SPYQLTWG 193
Score = 74.1 bits (183), Expect = 9e-15
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
LH A + ++ +L+K GA+VN + ++P + + L +
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213
Query: 277 NCHSKSAIDVA 287
S+
Sbjct: 214 LPESEDEESYD 224
Score = 72.2 bits (178), Expect = 4e-14
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 26/118 (22%)
Query: 1079 TPLHEAAAKG----KADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL----- 1128
+ LH A +++R + A + +N TPL L V ++++ L
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69
Query: 1129 -------RGNSALLDAAKKGNLGRVQKLL-------TADNINCRDAQGRNSTPLHLAA 1172
RGN+ L A ++G L V L + + G T LHLA+
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH--TCLHLAS 125
Score = 71.8 bits (177), Expect = 7e-14
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD-LWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G LH A +G+ + E+L+ GA+VNA + T LH A ++ SLLL GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 273 P 273
Sbjct: 177 V 177
Score = 70.7 bits (174), Expect = 2e-13
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 26/112 (23%)
Query: 1064 VKHGANVNVADLWK-FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ 1122
V GA+VN + T LH A D+V LLL+ GAD ++ G +P L
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL------ 190
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLL--TADNINCRDAQGRNSTPLHLAA 1172
+ + Q+L T + +
Sbjct: 191 --------------TWGRPSTRIQQQLGQLTLE-NLQMLPESE--DEESYDT 225
Score = 67.2 bits (165), Expect = 2e-12
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGAN------VNAMDLWQFTPLHEAASKSRLEVCSLLL 267
G PLH AC G +L ++ + A + T LH A+ L + LL+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 268 SEGAD 272
S GAD
Sbjct: 138 SLGAD 142
Score = 61.0 bits (149), Expect = 3e-10
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 35/112 (31%)
Query: 18 HARDDGGLHPLHNACSFGH----ADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
+ G LH A +V+R + A N ++N TPLH A + ++
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI- 60
Query: 74 IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
AE L G DP L++ G TPL
Sbjct: 61 -----AE-------------------------ALLGAGCDPELRDFRGNTPL 82
Score = 57.6 bits (140), Expect = 3e-09
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 736 EKNKELLAPIHLAADLGH----LDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVR 791
+ ++ + +HLA ++V+ + A +N + L QT LH ++ +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 792 VLLSHNAD 799
LL D
Sbjct: 63 ALLGAGCD 70
Score = 47.9 bits (115), Expect = 6e-06
Identities = 4/46 (8%), Positives = 7/46 (15%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262
P + + L + M E
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 40.6 bits (96), Expect = 0.002
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
Y G +P P I + L + + E + +
Sbjct: 182 YQGYSPYQLTWGRPS---TRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 39.8 bits (94), Expect = 0.003
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1105 KKNRDGATPLDLV-----REGDQDVSDLLRGNSALLD------------AAKKGNLGRVQ 1147
+ DG + L L + +V ++G+ A L+ A +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 1148 KLLTAD-NINCRDAQGRNSTPLHLAA 1172
LL A + RD +G TPLHLA
Sbjct: 63 ALLGAGCDPELRDFRGN--TPLHLAC 86
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 139 bits (352), Expect = 4e-37
Identities = 56/341 (16%), Positives = 88/341 (25%), Gaps = 113/341 (33%)
Query: 424 HIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
I + +G ADV S+ TP AA+K
Sbjct: 6 IIGSRTAGEGA--MEYLIEWKDGHSPSWVPSSYIAADVVSE-------YETPWWTAARKA 56
Query: 484 RTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA 543
Q + L + D V+A D GR T L F A
Sbjct: 57 DEQALSQL-----------------LEDRD------------VDAVDENGR--TALLFVA 85
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADL-WKFTPLHEAA-------AKALLQHGAD 595
G + +L + GA+++ D+ T LH AA +AL++ GAD
Sbjct: 86 ---------GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136
Query: 596 INLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWC 653
I +++ G TAL+LA ++ R IG
Sbjct: 137 IEVEDERGLTALELAR-------EILKTTPKGNPMQFGR----------------RIG-- 171
Query: 654 SCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAV 713
++ +LE + + K G +
Sbjct: 172 -------------LEKVIN---VLEGQVFEYAEVDE-------IVEKRGK-GKDVEYLVR 207
Query: 714 TSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHL 754
A K+ E + A +
Sbjct: 208 WK---DGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243
Score = 113 bits (286), Expect = 3e-28
Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 33/192 (17%)
Query: 403 LLEASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGAD 460
LL + G V L ++ RD+ G T LH AAGY R VVE L+ GAD
Sbjct: 81 LLFVAGLGSDKCVRLLAE---AGADLDHRDMRGG-LTALHMAAGYVRPEVVEALVELGAD 136
Query: 461 VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSA--ANDPLRELFEACKGGDLTKVK 518
+ D+ G T L A + +T + + + + E +
Sbjct: 137 I----EVEDERGLTALELAREILKTTPKGNP-MQFGRRIGLEKVINVLEGQVFEYAEVDE 191
Query: 519 KLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKF 578
+ + G+ + + + H A D
Sbjct: 192 -------IVEKRGKGK--DVEYLVR---------WKDGGDCEWVKGVHVAEDVAKD--YE 231
Query: 579 TPLHEAAAKALL 590
L A A++++
Sbjct: 232 DGLEYAVAESVI 243
Score = 96.1 bits (240), Expect = 4e-22
Identities = 44/287 (15%), Positives = 74/287 (25%), Gaps = 75/287 (26%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G + GH A+V + TP AA K+ + S LL E D
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDV 70
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTS---DVVNFKH 330
+ + ++A LL G V+ L D+ + +
Sbjct: 71 DAVDENGRTA---------------------LLFVAGLGSDKCVR-LLAEAGADL-DHRD 107
Query: 331 PYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVR---------EHRDNGQSGGYTALQV 381
G T L + V E D G TAL++
Sbjct: 108 MRGGLTAL--------------HMAAGYVRPEVVEALVELGADIEVEDER---GLTALEL 150
Query: 382 AGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSC----PHIVNCRDLDGRHST 437
A E K + ++ + + V +L + + G+
Sbjct: 151 AREILKT------TPKGN---PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKD 201
Query: 438 PLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
+ + H A+ +KD L A +
Sbjct: 202 VEYLVRWKDGGDCEWVKGVHVAEDVAKDYE------DGLEYAVAESV 242
Score = 91.9 bits (229), Expect = 9e-21
Identities = 43/283 (15%), Positives = 76/283 (26%), Gaps = 86/283 (30%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDG 603
G V E L++ H + AD+ ++
Sbjct: 1 GEVNKIIGSRTAGEGAMEYLIEWKDG------------HSPSWVPSSYIAADVV---SEY 45
Query: 604 KTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMEL 661
+T A ++ +LLE D+
Sbjct: 46 ETPWWTAA-------RKADEQALSQLLEDR-----------------DV----------- 70
Query: 662 MFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLHCAVTSPYP 718
DE LL G V+ L D+ + + G T LH A
Sbjct: 71 ----DAVDENGRTALLFVAGLGSDKCVR-LLAEAGADL-DHRDMRGGLTALHMAAGY--- 121
Query: 719 KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVL----- 773
R +VE+L+ GA + +++ L + LA ++ ++ G ++ L V+
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181
Query: 774 -----------------GQTALHRTARDDKTQAVRVLLSHNAD 799
G+ + D V H A+
Sbjct: 182 QVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224
Score = 91.9 bits (229), Expect = 9e-21
Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD-NWNFT 59
+ + LL + A D+ G L G VRLL EA A+ + RD T
Sbjct: 55 KADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AA + +V + GAD ++++
Sbjct: 114 ALHMAAGYVRPEVV-------------------------------EALVELGADIEVEDE 142
Query: 120 EGQTPLDL 127
G T L+L
Sbjct: 143 RGLTALEL 150
Score = 88.8 bits (221), Expect = 1e-19
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Query: 1064 VKHGANVNVADL-WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ GA+++ D+ T LH AA + ++V L++ GAD ++ G T L+L
Sbjct: 97 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156
Query: 1122 QDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRH 1177
+ K N+ Q A+ + +G+ +L +
Sbjct: 157 TTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGG 212
Score = 88.8 bits (221), Expect = 1e-19
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G V L +GA + RD GGL LH A + +VV L+E A+ D T
Sbjct: 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 146
Query: 60 PLHEAAAKGKTDV 72
L A KT
Sbjct: 147 ALELAREILKTTP 159
Score = 85.3 bits (212), Expect = 2e-18
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 9/170 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
A R+ D + + L V+ G T L V L GA L+
Sbjct: 49 WWTAARKADEQALSQLLEDRDVDAVDEN-GRTALLFVAGL---GSDKCVRLLAEAGADLD 104
Query: 736 EKNKEL-LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
++ L +H+AA +V++ L+ LGA + + D G TAL KT +
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 164
Query: 795 SHNAD---TSIVSLLVIFSCSTNLGLKHLLELFEREQITLDILAEMNHED 841
++++L + ++E + + ++ + D
Sbjct: 165 QFGRRIGLEKVINVLEG-QVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGD 213
Score = 81.5 bits (202), Expect = 4e-17
Identities = 29/122 (23%), Positives = 39/122 (31%), Gaps = 25/122 (20%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN-RDGATPLDLVREGDQDV 1124
+V+ D T L A G VRLL + GAD ++ R G T
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA----------- 114
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRV 1183
L AA V+ L+ +I D +G T L LA E
Sbjct: 115 ---------LHMAAGYVRPEVVEALVELGADIEVEDERGL--TALELAR-EILKTTPKGN 162
Query: 1184 TL 1185
+
Sbjct: 163 PM 164
Score = 77.3 bits (191), Expect = 9e-16
Identities = 19/118 (16%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
V+ GA++ V D T L A K +Q G + L+ +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV--LEGQVFEYAE 188
Query: 1124 VSDLL----RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKR 1176
V +++ +G K +D L A E
Sbjct: 189 VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD----YEDGLEYAVAESV 242
Score = 69.6 bits (171), Expect = 5e-13
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
Y R +VVE L+ GA I D+ GL L A ++
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV---IN 177
Query: 61 LHEAAAKGKTDV 72
+ E +V
Sbjct: 178 VLEGQVFEYAEV 189
Score = 68.8 bits (169), Expect = 8e-13
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL--------- 1128
G + AD + TP R+ D+ L
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLEDRDVDAV 73
Query: 1129 --RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
G +ALL A G+ V+ L A +++ RD +G T LH+AAG
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGY 121
Score = 53.8 bits (130), Expect = 7e-08
Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 36/105 (34%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80
+G + GH+ A+ + TP AA K
Sbjct: 13 GEGAME-YLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQA------LS 62
Query: 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L D ++ G+T L
Sbjct: 63 --------------------------QLLEDRDVDAVDENGRTAL 81
Score = 51.1 bits (123), Expect = 7e-07
Identities = 8/90 (8%), Positives = 15/90 (16%), Gaps = 24/90 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLH----------------------PLHNACSFGHAD 38
+ + G I + + D
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGD 213
Query: 39 VVRLLLEADANPNTRDNWNFTPLHEAAAKG 68
+ A +D L A A+
Sbjct: 214 CEWVKGVHVAEDVAKD--YEDGLEYAVAES 241
Score = 45.7 bits (109), Expect = 4e-05
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260
G + + + A A D L A ++S +
Sbjct: 199 GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243
Score = 42.6 bits (101), Expect = 3e-04
Identities = 5/50 (10%), Positives = 11/50 (22%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGA 1111
+ + K D + H A+ K+ +
Sbjct: 184 FEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDG 233
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 137 bits (348), Expect = 1e-36
Identities = 52/222 (23%), Positives = 79/222 (35%), Gaps = 58/222 (26%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHI--VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAH--G 458
L + + + LLS ++ + D G TP H A + VV+ L
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYDRPLK 97
Query: 459 ADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVK 518
D+ N G T LH A K ++S L + G
Sbjct: 98 PDL----NKITNQGVTCLHLAVGKKWFEVSQFL-IE---------------NGAS----- 132
Query: 519 KLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGAN-VNVADLWK 577
V +D + PLH AA S G ++ E+L G + VN D
Sbjct: 133 -------VRIKDKFNQ--IPLHRAA---------SVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 578 FTPLHEAA-------AKALL-QHGADINLKNTDGKTALDLAV 611
+TPL A A L+ ++GA+ +L + G A D+A+
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 131 bits (332), Expect = 1e-34
Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 50/186 (26%)
Query: 436 STPLHFAAGYNRVA-VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLS 494
+ PLH A N V E L + + + D+ G PLH + ++++ L LS
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLL----LQKDQDGRIPLHWSVSFQAHEITSFL-LS 57
Query: 495 PSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSY 554
K + VN D G P H ACS
Sbjct: 58 ---------------KMEN------------VNLDDYPDDS--------GWTPFHIACSV 82
Query: 555 GHYEVTEMLVKH--GANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKT 605
G+ EV + L ++N T LH A ++ L+++GA + +K+ +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 606 ALDLAV 611
L A
Sbjct: 143 PLHRAA 148
Score = 124 bits (314), Expect = 3e-32
Identities = 47/196 (23%), Positives = 65/196 (33%), Gaps = 50/196 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHI-VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADV 461
A G++ VV L +N G T LH A G V ++L+ +GA V
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAVGKKWFEVSQFLIENGASV 133
Query: 462 HSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV 521
DK+ PLH AA G +L LL +
Sbjct: 134 ----RIKDKFNQIPLHRAASVGSLKLIELL-CGLGKSA---------------------- 166
Query: 522 NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLV-KHGANVNVADLWKFTP 580
VN +D G TPL A + GH + +LV K+GA ++ D
Sbjct: 167 ----VNWQDKQGW--TPLFHAL---------AEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 581 LHEAA----AKALLQH 592
A K L +
Sbjct: 212 EDVALNEQVKKFFLNN 227
Score = 97.1 bits (243), Expect = 1e-22
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANP-NTRDNWNFT 59
+V ++L+ +GAS+ +D PLH A S G ++ LL + N +D +T
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL--AHGADPFLK 117
PL A A+G D A L +GA+ L
Sbjct: 177 PLFHALAEGHGDA------AV--------------------------LLVEKYGAEYDLV 204
Query: 118 NQEGQTPLDLTVAEDVRSLL 137
+ +G D+ + E V+
Sbjct: 205 DNKGAKAEDVALNEQVKKFF 224
Score = 95.6 bits (239), Expect = 3e-22
Identities = 35/152 (23%), Positives = 49/152 (32%), Gaps = 50/152 (32%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
PLH+A + L S K + +D
Sbjct: 2 SNYPLHQACMENEFFKVQELLHS---------------KPSL------------LLQKDQ 34
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADL---WKFTPLHEAA--- 585
GR PLH++ S+ +E+T L+ NVN+ D +TP H A
Sbjct: 35 DGR--IPLHWSV---------SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 586 ----AKALLQH--GADINLKNTDGKTALDLAV 611
K+L D+N G T L LAV
Sbjct: 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Score = 89.4 bits (223), Expect = 5e-20
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVS 1125
++N T LH A K ++ + L+++GA K++ PL G +
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 1126 DLL-------------RGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHL 1170
+LL +G + L A +G+ L+ + D +G +
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA--KAEDV 214
Query: 1171 AA 1172
A
Sbjct: 215 AL 216
Score = 87.1 bits (217), Expect = 3e-19
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 21/128 (16%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADP---SKKNRDGATPLDL-VRE 1119
+ + D PLH + + +I LL + + G TP +
Sbjct: 23 HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV 82
Query: 1120 GDQDVSDLL--------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRN 1164
G+ +V L +G + L A K Q L+ ++ +D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ- 141
Query: 1165 STPLHLAA 1172
PLH AA
Sbjct: 142 -IPLHRAA 148
Score = 86.7 bits (216), Expect = 4e-19
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 1 YGRKD-VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTR---DNW 56
V E L + + + +D G PLH + SF ++ LL N N D+
Sbjct: 12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS 71
Query: 57 NFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMH-------KDRSCYL- 108
+TP H A + G +V + K + G T +H + S +L
Sbjct: 72 GWTPFHIACSVGNLEVV--KSLYDRPLKPDLNKITNQGVT--CLHLAVGKKWFEVSQFLI 127
Query: 109 AHGADPFLKNQEGQTPL 125
+GA +K++ Q PL
Sbjct: 128 ENGASVRIKDKFNQIPL 144
Score = 84.4 bits (210), Expect = 3e-18
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 676 LLEACRQGDPSRVKKFLTSD--VVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
L +AC + + +V++ L S ++ K G PLH +V+ + I L+ K +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSF---QAHEITSFLLSKMEN 61
Query: 734 LN---EKNKELLAPIHLAADLGHLDVLDTLL--RLGAKVNLVDVLGQTALHRTARDDKTQ 788
+N + P H+A +G+L+V+ +L L +N + G T LH +
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 789 AVRVLLSHNAD 799
+ L+ + A
Sbjct: 122 VSQFLIENGAS 132
Score = 82.9 bits (206), Expect = 8e-18
Identities = 52/263 (19%), Positives = 78/263 (29%), Gaps = 54/263 (20%)
Query: 213 LGLVPLHNACSYGHF-EVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
+ PLH AC F +V E+L + + D PLH + S E+ S LLS+
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 272 DPTLHNCHSKSAIDVAPTRELQQRLSNEFKGH-CLLEACRQGDPSRVKKFLTSDV---VN 327
+ L + S G AC G+ VK + +N
Sbjct: 61 NVNLDDYPDDS-------------------GWTPFHIACSVGNLEVVKSLYDRPLKPDLN 101
Query: 328 FKHPYTGDTPLPGTLLIDLLSDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGE 384
G T L + + E V++ E A+VR Q L A
Sbjct: 102 KIT-NQGVTC----LHLAVGKKWFE---VSQFLIENGASVRIKDKFNQ----IPLHRAAS 149
Query: 385 NSKK-----LLQEPPSVVDLESQ-----LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
L S V+ + + L A G L+ + D G
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 435 HSTPLHFAAGYNRVAVVEYLLAH 457
A V ++ L +
Sbjct: 210 --KAEDVALNEQ---VKKFFLNN 227
Score = 81.7 bits (203), Expect = 2e-17
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRK--GAHLNEKNKELLAPIHLAADLGHLDVLDTLLR 762
G TP H A +V+SL + LN+ + + +HLA +V L+
Sbjct: 72 GWTPFHIAC---SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
GA V + D Q LHR A + + +L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Score = 79.0 bits (196), Expect = 2e-16
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+ PLH A + + E L K + L +K+++ P+H + ++ LL
Sbjct: 2 SNYPLHQA--CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 765 AKVNLVDVL---GQTALHRTARDDKTQAVRVLLSHNADTSI 802
VNL D G T H + V+ L +
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100
Score = 76.7 bits (190), Expect = 1e-15
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 22/115 (19%)
Query: 1078 FTPLHEAAAKG-KADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL------- 1128
PLH+A + + LL + +K++DG PL V +++ L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 1129 --------RGNSALLDAAKKGNLGRVQKLLTAD---NINCRDAQGRNSTPLHLAA 1172
G + A GNL V+ L ++N QG T LHLA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAV 115
Score = 73.6 bits (182), Expect = 1e-14
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKG-AHLNEKNKELLAPIHLAADLGHLDVLDTLL-R 762
PLH A + ++E L G + +N ++K+ P+ A GH D L+ +
Sbjct: 140 NQIPLHRAASV---GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 763 LGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
GA+ +LVD G A + + L++
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNN 227
Score = 57.1 bits (139), Expect = 5e-09
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 27 PLHNACSFGHAD-VVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
PLH AC V LL + +D PLH + + ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 51
Score = 42.8 bits (102), Expect = 3e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAA 1172
N L A + +VQ+LL + + +D GR PLH +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSV 44
Score = 40.1 bits (95), Expect = 0.002
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
K+GA ++ D A + + + L +
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227
Score = 29.3 bits (67), Expect = 5.9
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 773 LGQTALHRTARD-DKTQAVRVLLSHNAD 799
+ LH+ + + + +L S +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSL 28
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 134 bits (341), Expect = 1e-36
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 51/184 (27%)
Query: 434 RHSTPLHFAAGYNRVAVVEYLL-AHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLP 492
R L AA V V LL +A +++G T L G T ++ L
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHP----DALNRFGKTALQ-VMMFGSTAIALEL- 54
Query: 493 LSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNAC 552
L +G N +DT+G +P+H AA
Sbjct: 55 LK---------------QGAS------------PNVQDTSGT--SPVHDAA--------- 76
Query: 553 SYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK------ALLQHGADINLKNTDGKTA 606
G + ++LV+HGA+VNV D P+H A + + L +D++ ++ G T
Sbjct: 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 607 LDLA 610
L+LA
Sbjct: 137 LELA 140
Score = 132 bits (334), Expect = 9e-36
Identities = 45/197 (22%), Positives = 63/197 (31%), Gaps = 54/197 (27%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A+ GD+ V RLL + + G+ T L + A+ LL GA
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGK--TALQVMM-FGSTAIALELLKQGASP- 61
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N D G +P+H+AA+ G +L + G D
Sbjct: 62 ---NVQDTSGTSPVHDAARTGFLDTLKVL-VE---------------HGAD--------- 93
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
VN D G P+H A GH V L ++++ D TPL
Sbjct: 94 ---VNVPDGTGA--LPIHLAV---------QEGHTAVVSFLAAE-SDLHRRDARGLTPLE 138
Query: 583 EAA-------AKALLQH 592
A L H
Sbjct: 139 LALQRGAQDLVDILQGH 155
Score = 102 bits (257), Expect = 2e-25
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 32/127 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G + LL GAS + +D G P+H+A G D +++L+E A+ N D P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
+H A +G T V +LA +D ++
Sbjct: 105 IHLAVQEGHTAV------VS--------------------------FLAAESDLHRRDAR 132
Query: 121 GQTPLDL 127
G TPL+L
Sbjct: 133 GLTPLEL 139
Score = 92.9 bits (232), Expect = 4e-22
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
+ + + + + T L G I LL+ GA P+ ++ G +P+ R G D
Sbjct: 24 RELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82
Query: 1124 VSDLL------------RGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLA 1171
+L G + A ++G+ V L +++ RDA+G TPL LA
Sbjct: 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGL--TPLELA 140
Query: 1172 A 1172
Sbjct: 141 L 141
Score = 89.4 bits (223), Expect = 9e-21
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 676 LLEACRQGDPSRVKKFLTSDV--VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
L A +GD V++ L ++ + + + G T L + AI L+++GA
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMF----GSTAIALELLKQGAS 60
Query: 734 LNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
N ++ +P+H AA G LD L L+ GA VN+ D G +H ++ T V L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 794 LSHNAD 799
+ +D
Sbjct: 121 AAE-SD 125
Score = 85.2 bits (212), Expect = 3e-19
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D ++ L+ GA ++ D G P+H A GH VV L +++ + RD TP
Sbjct: 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTP 136
Query: 61 LHEAAAKGKTDV 72
L A +G D+
Sbjct: 137 LELALQRGAQDL 148
Score = 80.1 bits (199), Expect = 1e-17
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G +P+H A ++ L+ GA +N + PIHLA GH V+ L
Sbjct: 68 GTSPVHDAA---RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E 123
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
+ ++ D G T L + V +L H
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 77.8 bits (193), Expect = 8e-17
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G P+H+A G + ++L++ GA+VN D P+H A + V S L + +D
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126
Query: 274 TLHNCHSKSAIDVA 287
+ + +++A
Sbjct: 127 HRRDARGLTPLELA 140
Score = 73.2 bits (181), Expect = 3e-15
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G L +G + L+K GA+ N D +P+H+AA L+ +L+ GAD
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Score = 70.5 bits (174), Expect = 3e-14
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
V+HGA+VNV D P+H A +G +V L +D +++ G TPL+L
Sbjct: 88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL------- 139
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLL 1150
A ++G V L
Sbjct: 140 -------------ALQRGAQDLVDILQ 153
Score = 65.9 bits (162), Expect = 1e-12
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 217 PLHNACSYGHFEVTEMLI-KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L A + G + L+ + + +A++ + T L + LL +GA P
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASP 61
Score = 62.8 bits (154), Expect = 1e-11
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
P+H A GH V L ++++ D TPL A + ++ +L
Sbjct: 104 PIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 57.8 bits (141), Expect = 7e-10
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 33/100 (33%)
Query: 27 PLHNACSFGHADVVRLLLEAD-ANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKS 85
L A + G VR LL + +P+ + + T L G T + A
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAI------AL----- 52
Query: 86 NQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L GA P +++ G +P+
Sbjct: 53 --------------------ELLKQGASPNVQDTSGTSPV 72
Score = 57.4 bits (140), Expect = 1e-09
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE 45
G VV +L + + +H RD GL PL A G D+V +L
Sbjct: 111 EGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 48.9 bits (118), Expect = 1e-06
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 1129 RGNSALLDAAKKGNLGRVQKLLTAD--NINCRDAQGRNSTPLHLAA 1172
R L AA +G++ V++LL + + + + G+ T L +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK--TALQVMM 44
Score = 48.6 bits (117), Expect = 1e-06
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 744 PIHLAADLGHLDVLDTLL-RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ AA G + + LL R + ++ G+TAL LL A
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGAS 60
Score = 46.3 bits (111), Expect = 9e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
++++ D TPL A +G D+V +L H
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 32.0 bits (74), Expect = 0.55
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIK 235
GL PL A G ++ ++L
Sbjct: 133 GLTPLELALQRGAQDLVDILQG 154
Score = 31.6 bits (73), Expect = 0.81
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 249 TPLHEAASKSRL-EVCSLLLSEGADP 273
L AA++ + EV LL E P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHP 29
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 136 bits (345), Expect = 3e-36
Identities = 41/190 (21%), Positives = 62/190 (32%), Gaps = 54/190 (28%)
Query: 430 DLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSA 489
++ G+ L N +AHG V L +++ +G L
Sbjct: 2 EITGQ--VSLPPGKRTNLRKTGSERIAHGMRVKFNPL-----PLALLLDSSLEGEFDLVQ 54
Query: 490 LLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
+ + + D + + G T LH A
Sbjct: 55 RI-IY---------------EVDD------------PSLPNDEGI--TALHNAV------ 78
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNT- 601
GH E+ + LV+ G NVN AD +TPLH AA K L++ GA +
Sbjct: 79 ---CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Query: 602 DGKTALDLAV 611
D +TA D
Sbjct: 136 DMQTAADKCE 145
Score = 123 bits (310), Expect = 1e-31
Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 47/211 (22%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LL++S G+ +V R++ + + +G T LH A +V++L+ G +V
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGI--TALHNAVCAGHTEIVKFLVQFGVNV- 96
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
NA D G+TPLH AA Q+ L + G
Sbjct: 97 ---NAADSDGWTPLHCAASCNNVQVCKFL-VE---------------SGAA--------- 128
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
V A + + G+ + ++ L + + + L
Sbjct: 129 ---VFAMTYSDMQ--------TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Query: 583 EAAAKA----LLQHGADINLKNTDGKTALDL 609
+ + ++ G + + + + + ++
Sbjct: 178 DYEPQNDDELPMKEGDCMTIIHREDEDEIEW 208
Score = 95.4 bits (238), Expect = 5e-22
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D+V+ ++ +D G+ LHNA GH ++V+ L++ N N D+ +TP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM-------HKDRSCYL-AHGA 112
LH AA+ VC + E + Y T + S +L
Sbjct: 107 LHCAASCNNVQVC--KFLVESGAAVFAMTYS-DMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 113 DPFLKNQEGQTPL 125
+ N+ L
Sbjct: 164 KMGIMNKGVIYAL 176
Score = 86.5 bits (215), Expect = 7e-19
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 34/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ +A G + + L L ++ G D+V+ ++ +P+ ++ T
Sbjct: 15 TNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
LH A G T++ + +L G + +
Sbjct: 74 LHNAVCAGHTEI------VK--------------------------FLVQFGVNVNAADS 101
Query: 120 EGQTPL 125
+G TPL
Sbjct: 102 DGWTPL 107
Score = 85.4 bits (212), Expect = 1e-18
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 4/124 (3%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
L R + + K L + +V+ +I + +
Sbjct: 9 LPPGKRTNLRKTGS-ERIAHGMRVKFNPLPLALLLDSSLE---GEFDLVQRIIYEVDDPS 64
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
N E + +H A GH +++ L++ G VN D G T LH A + Q + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 796 HNAD 799
A
Sbjct: 125 SGAA 128
Score = 84.6 bits (210), Expect = 3e-18
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ HG V L L +++ +G+ D+V+ ++ DPS N +G T L V G
Sbjct: 25 IAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQ-GRNSTPL 1168
++ L G + L AA N+ + L+ + + + +
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 1169 HLAAGE 1174
E
Sbjct: 144 CEEMEE 149
Score = 84.2 bits (209), Expect = 4e-18
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ + ++ + T LH A G +IV+ L+Q G + + + DG TPL +
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116
Query: 1123 DVSDLL---------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNST 1166
V L + + + ++G Q L + +
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI--Y 174
Query: 1167 PLHLAAGE 1174
L +
Sbjct: 175 ALWDYEPQ 182
Score = 82.7 bits (205), Expect = 1e-17
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G L + + I G + LA + ++ G D++ ++
Sbjct: 5 GQVSLPPGKRT---NLRKTGSERIAHGMRVKFNPLP-LALLLDSSLEGEFDLVQRIIYEV 60
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+L + G TALH T+ V+ L+ +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Score = 81.5 bits (202), Expect = 3e-17
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G+ LHNA GH E+ + L++ G NVNA D +TPLH AAS + ++VC L+ GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Score = 78.4 bits (194), Expect = 4e-16
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLH---PLHNACSFGHADVVRLLLEADANPNTRDNWN 57
V ++L+ SGA++ A + G+ + L +
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV 172
Query: 58 FTPLHEAAAKGKTDVCI 74
L + + ++ +
Sbjct: 173 IYALWDYEPQNDDELPM 189
Score = 77.3 bits (191), Expect = 9e-16
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
LL++ +G+ V++ + + + G T LH AV + IV+ L++ G ++
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCA---GHTEIVKFLVQFGVNV 96
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLV---DVLGQTALHRTARDDKTQAVR 791
N + + P+H AA ++ V L+ GA V + D+ + TQ +
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Query: 792 VLLSHNAD 799
L
Sbjct: 157 FLYGVQEK 164
Score = 76.9 bits (190), Expect = 1e-15
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 213 LGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L L L ++ G F++ + +I + + + T LH A E+ L+ G +
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Score = 74.2 bits (183), Expect = 1e-14
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 14/132 (10%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK---ELLAPIHLAADLGHLDVLDTLL 761
G TPLHCA + + + L+ GA + + A + G+ L
Sbjct: 103 GWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159
Query: 762 RLGAKVNLVDVLGQTALHRTARDD-----KTQAVRVLLSHNADTSIVSLLVIFSCSTNLG 816
+ K+ +++ AL + + + + H D + + G
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWW-WARLNDKEG 218
Query: 817 L--KHLLELFER 826
++LL L+ R
Sbjct: 219 YVPRNLLGLYPR 230
Score = 72.6 bits (179), Expect = 3e-14
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAM---DLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A S + +V + L+++GA V AM D+ E + + L
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165
Score = 71.9 bits (177), Expect = 6e-14
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G V L + I G V L L +++ + ++ ++ E DP
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDP 63
Score = 70.7 bits (174), Expect = 2e-13
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL--------- 1128
L + HG K N L EG+ D+ +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 1129 ---RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G +AL +A G+ V+ L+ N+N D+ G TPLH AA
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW--TPLHCAA 111
Score = 60.7 bits (148), Expect = 4e-10
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
G+ + ++ L + M+ L + ++ E L + EG T+
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTI 197
Score = 59.5 bits (145), Expect = 8e-10
Identities = 13/105 (12%), Positives = 23/105 (21%), Gaps = 32/105 (30%)
Query: 21 DDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAE 80
+ G L + L +++ +G+ D+ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDL------VQ 54
Query: 81 HSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
+ DP L N EG T L
Sbjct: 55 -------------------------RIIYEVDDPSLPNDEGITAL 74
Score = 42.6 bits (101), Expect = 4e-04
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRD--GATPLDLVREGD 1121
+ + + L + + + L ++ G + +R+ R D
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLND 215
Query: 1122 QD 1123
++
Sbjct: 216 KE 217
Score = 33.7 bits (78), Expect = 0.23
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 771 DVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ GQ +L R + + ++H
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR 30
Score = 33.4 bits (77), Expect = 0.31
Identities = 3/44 (6%), Positives = 10/44 (22%), Gaps = 4/44 (9%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G +L + + + + L ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL---PLALLLDSS 45
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 133 bits (337), Expect = 9e-36
Identities = 49/206 (23%), Positives = 62/206 (30%), Gaps = 56/206 (27%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L K G D+ + TP AA + LL DV
Sbjct: 18 YLIEWKDGHSPSWVPSSY------IAADVVSEYETPWWTAARKADEQALSQLL-EDRDV- 69
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+A D+ G T L A G + LL G D
Sbjct: 70 ---DAVDENGRTALLFVAGLGSDKCVRLL-AE---------------AGAD--------- 101
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
++ RD G T LH AAG Y EV E LV+ GA++ V D T L
Sbjct: 102 ---LDHRDMRGGL-TALHMAAG---------YVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 583 EAA-------AKALLQHGADINLKNT 601
A +Q G I L+
Sbjct: 149 LAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 133 bits (336), Expect = 1e-35
Identities = 44/187 (23%), Positives = 64/187 (34%), Gaps = 55/187 (29%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
G + ADV S+ TP AA+K Q + L
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-------YETPWWTAARKADEQALSQL 63
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
+ D V+A D GR T L F A
Sbjct: 64 -----------------LEDRD------------VDAVDENGR--TALLFVA-------- 84
Query: 552 CSYGHYEVTEMLVKHGANVNVADL-WKFTPLHEAA-------AKALLQHGADINLKNTDG 603
G + +L + GA+++ D+ T LH AA +AL++ GADI +++ G
Sbjct: 85 -GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 143
Query: 604 KTALDLA 610
TAL+LA
Sbjct: 144 LTALELA 150
Score = 93.3 bits (233), Expect = 7e-22
Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD-NWNFT 59
+ + LL + A D+ G L G VRLL EA A+ + RD T
Sbjct: 54 KADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AA + +V + GAD ++++
Sbjct: 113 ALHMAAGYVRPEVV-------------------------------EALVELGADIEVEDE 141
Query: 120 EGQTPLDL 127
G T L+L
Sbjct: 142 RGLTALEL 149
Score = 89.5 bits (223), Expect = 1e-20
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDD-GGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G V L +GA + RD GGL LH A + +VV L+E A+ D T
Sbjct: 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 145
Query: 60 PLHEAAAKGKTDVC 73
L A KT
Sbjct: 146 ALELAREILKTTPK 159
Score = 87.9 bits (219), Expect = 5e-20
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLN 735
A R+ D + + L V+ G T L V L GA L+
Sbjct: 48 WWTAARKADEQALSQLLEDRDVDAVDEN-GRTALLFVAGL---GSDKCVRLLAEAGADLD 103
Query: 736 EKNKEL-LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
++ L +H+AA +V++ L+ LGA + + D G TAL KT +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Query: 795 SHNAD---TSIVSLL 806
++++L
Sbjct: 164 QFGRRIGLEKVINVL 178
Score = 84.1 bits (209), Expect = 1e-18
Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN-RDGATPLDLVREGDQDV 1124
+V+ D T L A G VRLL + GAD ++ R G T L +
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM-------- 116
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCRV 1183
AA V+ L+ +I D +G T L LA E
Sbjct: 117 ------------AAGYVRPEVVEALVELGADIEVEDERGL--TALELAR-EILKTTPKGN 161
Query: 1184 TL 1185
+
Sbjct: 162 PM 163
Score = 78.7 bits (195), Expect = 9e-17
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDL-WQFTPLHEAASKSRLEVCSLLLSEGADPTL 275
L G + +L +AGA+++ D+ T LH AA R EV L+ GAD +
Sbjct: 79 ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
Query: 276 HNCHSKSAIDVA 287
+ +A+++A
Sbjct: 139 EDERGLTALELA 150
Score = 77.9 bits (193), Expect = 2e-16
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 59/218 (27%)
Query: 567 GANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLS 619
+ AD+ ++ +T A
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA-------R 53
Query: 620 GDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLL 677
++ +LLE D+ DE LL
Sbjct: 54 KADEQALSQLLEDR-----------------DV---------------DAVDENGRTALL 81
Query: 678 EACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
G V + L D ++ + G T LH A R +VE+L+ GA +
Sbjct: 82 FVAGLGSDKCV-RLLAEAGAD-LDHRDMRGGLTALHMAAGY---VRPEVVEALVELGADI 136
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDV 772
+++ L + LA ++ ++ G ++ L V
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 76.8 bits (190), Expect = 4e-16
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
GL LH A Y EV E L++ GA++ D T L A + + G
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168
Score = 75.2 bits (186), Expect = 1e-15
Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G A + + + P AA L LL
Sbjct: 14 GAMEYLIEWKD---GHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLE-D 66
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
V+ VD G+TAL A + VR+L AD
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Score = 74.1 bits (183), Expect = 4e-15
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%)
Query: 1064 VKHGANVNVADL-WKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ 1122
+ GA+++ D+ T LH AA + ++V L++ GAD ++ G T L+L
Sbjct: 96 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL------ 149
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDA 1160
A + + I
Sbjct: 150 --------------AREILKTTPKGNPMQFGRRIGLEKV 174
Score = 70.6 bits (174), Expect = 5e-14
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
P A + L++ +V+A+D T L A + LL GAD
Sbjct: 47 PWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Score = 70.6 bits (174), Expect = 5e-14
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVS 1125
+ G + AD + TP R+ D+
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQAL 60
Query: 1126 DLL-----------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAG 1173
L G +ALL A G+ V+ L A +++ RD +G T LH+AAG
Sbjct: 61 SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAG 119
Query: 1174 E 1174
Sbjct: 120 Y 120
Score = 67.9 bits (167), Expect = 5e-13
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 20/94 (21%)
Query: 524 QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHE 583
+ TAG + GH A+V TP
Sbjct: 3 NKIIGSRTAGEGAMEYLIEW---------KDGHSPSWVPSSYIAADVVSEY---ETPWWT 50
Query: 584 AA-------AKALLQHGADINLKNTDGKTALDLA 610
AA LL D++ + +G+TAL
Sbjct: 51 AARKADEQALSQLL-EDRDVDAVDENGRTALLFV 83
Score = 61.7 bits (151), Expect = 7e-11
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
Y R +VVE L+ GA I D+ GL L A ++
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Score = 60.2 bits (147), Expect = 2e-10
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G + GH A+V + TP AA K+ + S LL E D
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDV 69
Score = 57.1 bits (139), Expect = 3e-09
Identities = 17/113 (15%), Positives = 24/113 (21%), Gaps = 36/113 (31%)
Query: 14 GASIHARDDG-GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
I +R G G GH+ A+ + TP AA K
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQA 59
Query: 73 CIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
L D ++ G+T L
Sbjct: 60 ------LS--------------------------QLLEDRDVDAVDENGRTAL 80
Score = 55.6 bits (135), Expect = 7e-09
Identities = 37/241 (15%), Positives = 58/241 (24%), Gaps = 71/241 (29%)
Query: 228 EVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
EV +++ A A AD ++
Sbjct: 1 EVNKIIGSRTAGEGA------MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETP---- 47
Query: 288 PTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLL 347
A R+ D + + L V+ G T LL
Sbjct: 48 -----------------WWTAARKADEQALSQLLEDRDVDAVDEN-GRTA----LLFVAG 85
Query: 348 SDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLL 404
+ E A + +HRD GG TAL +A + VV+ L+
Sbjct: 86 LGSDK---CVRLLAEAGADL-DHRDM--RGGLTALHMAAGYVRP------EVVEA---LV 130
Query: 405 EASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSK 464
G D + D G T L A + + G + +
Sbjct: 131 --ELGAD--------------IEVEDERGL--TALELAREILKTTPKGNPMQFGRRIGLE 172
Query: 465 D 465
Sbjct: 173 K 173
Score = 44.0 bits (105), Expect = 7e-05
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLL 794
+ E + GH + A V +T AR QA+ LL
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 64
Query: 795 SHNAD 799
+ D
Sbjct: 65 -EDRD 68
Score = 39.8 bits (94), Expect = 0.002
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMD 244
L A ++ G +
Sbjct: 146 ALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 30.2 bits (69), Expect = 2.8
Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 17/46 (36%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEA 46
+ + G I G V+ +L
Sbjct: 153 ILKTTPKGNPMQFGRRI-----------------GLEKVINVLEGQ 181
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 132 bits (334), Expect = 9e-36
Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 52/190 (27%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
L AA RV V LL GA+ NA + +G P+ G
Sbjct: 5 AGSSMEPSA--DWLATAAARGRVEEVRALLEAGANP----NAPNSYGRRPIQVMMM-GSA 57
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
+++ LL L G + N D A
Sbjct: 58 RVAELL-LL---------------HGAE------------PNCADPATLTR--------- 80
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINL 598
P+H+A G + +L + GA ++V D W P+ A A+ L
Sbjct: 81 -PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Query: 599 KNTDGKTALD 608
N A +
Sbjct: 140 SNHARIDAAE 149
Score = 110 bits (277), Expect = 4e-28
Identities = 36/165 (21%), Positives = 56/165 (33%), Gaps = 54/165 (32%)
Query: 455 LAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDL 514
+ A + L AA +GR + L L G +
Sbjct: 1 MEPAAGSSMEP------SADWLATAAARGRVEEVRAL-LE---------------AGAN- 37
Query: 515 TKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
NA ++ GR P+ G V E+L+ HGA N AD
Sbjct: 38 -----------PNAPNSYGR--RPIQVMM----------MGSARVAELLLLHGAEPNCAD 74
Query: 575 LWKFT-PLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
T P+H+AA L + GA +++++ G+ +DLA
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Score = 96.8 bits (242), Expect = 2e-23
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT- 59
GR + V LL +GA+ +A + G P+ G A V LLL A PN D T
Sbjct: 22 RGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTR 80
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
P+H+AA +G D + GA +++
Sbjct: 81 PVHDAAREGFLDTL-------------VVL------------------HRAGARLDVRDA 109
Query: 120 EGQTPLDL 127
G+ P+DL
Sbjct: 110 WGRLPVDL 117
Score = 96.4 bits (241), Expect = 3e-23
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++ A ++ L AAA+G+ + VR LL+ GA+P+ N G P+ ++ G
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58
Query: 1124 VSDLL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
V++LL + DAA++G L + L A ++ RDA GR P+
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR--LPVD 116
Query: 1170 LAA 1172
LA
Sbjct: 117 LAE 119
Score = 92.9 bits (232), Expect = 5e-22
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G V E LL GA + D P+H+A G D + +L A A + RD W
Sbjct: 54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113
Query: 60 PLHEAAAKGKTDV 72
P+ A G DV
Sbjct: 114 PVDLAEELGHRDV 126
Score = 86.0 bits (214), Expect = 1e-19
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
L A +G V+ L + N + Y G P+ + + E L+ GA
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMMM----GSARVAELLLLHGAEP 70
Query: 735 NEKNKE-LLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
N + L P+H AA G LD L L R GA++++ D G+ + R L
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Query: 794 LSHNAD 799
+
Sbjct: 131 RAAAGG 136
Score = 83.7 bits (208), Expect = 9e-19
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 29/113 (25%)
Query: 1064 VKHGANVNVADLWKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQ 1122
+ HGA N AD T P+H+AA +G D + +L + GA ++ G P+DL
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL------ 117
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
A + G+ + L A + + A E
Sbjct: 118 --------------AEELGHRDVARYLRAAAGGTRGSN-------HARIDAAE 149
Score = 82.5 bits (205), Expect = 2e-18
Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 78/196 (39%)
Query: 366 EHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHI 425
++ G +QV S + V +L LL G +
Sbjct: 39 NAPNSY---GRRPIQVMMMGSAR-------VAEL---LL--LHGAE-------------- 69
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
NC D + P+H AA + + L GA + + D WG P+ A + G
Sbjct: 70 PNCADPATL-TRPVHDAAREGFLDTLVVLHRAGARL----DVRDAWGRLPVDLAEELGHR 124
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
++ L + G +
Sbjct: 125 DVARYL-RA---------------AAGG------------TRGSN--------------- 141
Query: 546 VPLHNACSYGHYEVTE 561
+ G ++ +
Sbjct: 142 -HARIDAAEGPSDIPD 156
Score = 82.1 bits (204), Expect = 2e-18
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
L A R V +L+ GA+ N N PI + +G V + LL G
Sbjct: 12 SADWLATAAAR---GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67
Query: 765 AKVNLVDVLGQT-ALHRTARDDKTQAVRVLLSHNAD 799
A+ N D T +H AR+ + VL A
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Score = 82.1 bits (204), Expect = 3e-18
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D + L +GA + RD G P+ A GH DV R L A +
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----H 142
Query: 61 LHEAAAKGKTDV 72
AA+G +D+
Sbjct: 143 ARIDAAEGPSDI 154
Score = 79.4 bits (197), Expect = 2e-17
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPT-- 274
P+H+A G + +L +AGA ++ D W P+ A +V L +
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140
Query: 275 --LHNCHSKSAIDVA 287
++ D+
Sbjct: 141 NHARIDAAEGPSDIP 155
Score = 75.2 bits (186), Expect = 7e-16
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFT-PLHEAASKSRLEVCSLLLSEGAD 272
G P+ G V E+L+ GA N D T P+H+AA + L+ +L GA
Sbjct: 45 GRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Query: 273 PTLHNCHSKSAIDVA 287
+ + + +D+A
Sbjct: 104 LDVRDAWGRLPVDLA 118
Score = 73.3 bits (181), Expect = 3e-15
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L A + G E L++AGAN NA + + P+ V LLL GA+P
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEP 70
Score = 67.5 bits (166), Expect = 3e-13
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ GA ++V D W P+ A G D+ R L N EG D
Sbjct: 98 HRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA----EGPSD 153
Query: 1124 VSD 1126
+ D
Sbjct: 154 IPD 156
Score = 66.7 bits (164), Expect = 6e-13
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
N P T P+H A + L R GA L+ ++ P+ LA +LGH DV
Sbjct: 70 PNCADPATLTRPVHDAARE---GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 757 LDTLLRLGAKVNLVDVLGQTALH 779
L + A
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAAE 149
Score = 55.2 bits (134), Expect = 6e-09
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 728 IRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKT 787
+ A + + AA G ++ + LL GA N + G+ +
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 788 QAVRVLLSHNAD 799
+ +LL H A+
Sbjct: 58 RVAELLLLHGAE 69
Score = 54.8 bits (133), Expect = 9e-09
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262
G +P+ A GH +V L A + A++ ++
Sbjct: 111 GRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDI 154
Score = 48.6 bits (117), Expect = 1e-06
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 234 IKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
++ A + L AA++ R+E LL GA+P N + + I V
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52
Score = 45.5 bits (109), Expect = 2e-05
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVV 40
G +DV YL A+ + + G +D+
Sbjct: 121 LGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
Score = 44.4 bits (106), Expect = 3e-05
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLD 758
G P+ A + + L N + A G D+ D
Sbjct: 111 GRLPVDLAE---ELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIPD 156
Score = 40.5 bits (96), Expect = 6e-04
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 33/82 (40%)
Query: 44 LEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKD 103
+E A + + L AAA+G+ + + +
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEV-------------RAL-------------- 31
Query: 104 RSCYLAHGADPFLKNQEGQTPL 125
L GA+P N G+ P+
Sbjct: 32 ----LEAGANPNAPNSYGRRPI 49
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 133 bits (335), Expect = 4e-35
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 30/217 (13%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
A G + R+L+ D D R T LH+A +VE+LL G V
Sbjct: 14 AYSGKLDELKERILADKSLA-TRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPV---- 66
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRE----LFEACKGGDLTKVKKLV 521
N D G++PLH AA G ++ L + + N + L A L+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 522 NPQT-VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
+A+D +H A + G+ ++ +L+ + A+ N+ D TP
Sbjct: 127 EGGANPDAKDHYDA-----------TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175
Query: 581 LHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
LH A AK L+ GA I ++N + KT L +A
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 132 bits (334), Expect = 7e-35
Identities = 44/266 (16%), Positives = 84/266 (31%), Gaps = 48/266 (18%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
++ + A S E+ E ++ + D T LH A + LLQ G +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 597 NLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCC 656
N K+ G + L +A +E+++A + G ++
Sbjct: 67 NDKDDAGWSPLHIAA---------SAGXDEIVKALLVKGAHVNA---------------- 101
Query: 657 CKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSP 716
++ L A + L + T +H A
Sbjct: 102 -----------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK- 149
Query: 717 YPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQT 776
+V L+ A N ++ E P+HLA D ++ L+ GA + + + +T
Sbjct: 150 --GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Query: 777 ALHRTARDDKTQAVRVLLSHNADTSI 802
L + L+ + S+
Sbjct: 208 PLQVAKGGLGL--ILKRLAEGEEASM 231
Score = 119 bits (301), Expect = 2e-30
Identities = 59/306 (19%), Positives = 91/306 (29%), Gaps = 91/306 (29%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPS 496
+ A + E +LA + TD+ T LH A G T++ L L
Sbjct: 9 MICNLAYSGKLDELKERILADKSLA----TRTDQDSRTALHWACSAGHTEIVEFL-LQ-- 61
Query: 497 AANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
G VN +D AG +PLH AA S G
Sbjct: 62 -------------LGVP------------VNDKDDAGW--SPLHIAA---------SAGX 85
Query: 557 YEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDL 609
E+ + L+ GA+VN + TPLH AA A LL+ GA+ + K+ TA+
Sbjct: 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR 145
Query: 610 AVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKD 669
A +++ + +D
Sbjct: 146 AA---------AKGNLKMVHILLFYKASTNI---------------------------QD 169
Query: 670 EFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIR 729
L AC + K +T + TPL A ++ +
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK-----GGLGLILKRLA 224
Query: 730 KGAHLN 735
+G +
Sbjct: 225 EGEEAS 230
Score = 116 bits (291), Expect = 3e-29
Identities = 53/273 (19%), Positives = 86/273 (31%), Gaps = 60/273 (21%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
++ E +LA + D LH ACS GH ++V LL+ N +D+ ++P
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA+ G ++ L GA NQ
Sbjct: 77 LHIAASAGXDEIV-------------------------------KALLVKGAHVNAVNQN 105
Query: 121 GQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYS 180
G TPL +++ + + GA A+ + +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGNLKM-----VHIL 158
Query: 181 GSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANV 240
S ++ T PL H AC E + L+ GA++
Sbjct: 159 LFYKASTNIQDTEGNTPL--------------------HLACDEERVEEAKFLVTQGASI 198
Query: 241 NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ + TPL A L + L+EG +
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229
Score = 109 bits (275), Expect = 4e-27
Identities = 63/305 (20%), Positives = 95/305 (31%), Gaps = 87/305 (28%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
+ A +L + L+ D
Sbjct: 7 NIMICNLAYSGKLDELKERI-LA---------------DKSL------------ATRTDQ 38
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
R T LH+A S GH E+ E L++ G VN D ++PLH AA
Sbjct: 39 DSR--TALHWAC---------SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87
Query: 586 -AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWP 644
KALL GA +N N +G T L A + E+ G
Sbjct: 88 IVKALLVKGAHVNAVNQNGCTPLHYAA---------SKNRHEIAVMLLEGGANPDA---- 134
Query: 645 LGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 704
KD + + A +G+ V L
Sbjct: 135 -----------------------KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+TPLH A +R + L+ +GA + +NKE P+ +A G L ++ L G
Sbjct: 172 GNTPLHLACDE---ERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEG 226
Query: 765 AKVNL 769
+ ++
Sbjct: 227 EEASM 231
Score = 100 bits (250), Expect = 1e-23
Identities = 42/253 (16%), Positives = 69/253 (27%), Gaps = 35/253 (13%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
++ + A S E+ E ++ + D T LH A S E+ LL G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
+ S L A G VK L
Sbjct: 67 NDKDDAGWSP---------------------LHIAASAGXDEIVKALLVKGAHVNAVNQN 105
Query: 334 GDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEP 393
G TP L + E + E A + + A +L
Sbjct: 106 GCTP----LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 394 PSVVDLESQ-----LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRV 448
+ +++ L A + L++ I + + + TPL A G
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEK--TPLQVAKGGLG- 217
Query: 449 AVVEYLLAHGADV 461
++ LA G +
Sbjct: 218 -LILKRLAEGEEA 229
Score = 94.5 bits (235), Expect = 1e-21
Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 60/267 (22%)
Query: 22 DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEH 81
+ + A S ++ +L + D + T LH A + G T++ E
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI------VE- 57
Query: 82 SSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPLDLTVAEDVRSLLQDA 140
+L G K+ G +PL + + +++
Sbjct: 58 -------------------------FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 141 MAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLAL 200
+ + GA A + P Y+ + + A GG +
Sbjct: 93 LVK--GAHVNAVNQNGCTPLHYAASKNRHEI-----AVMLLEGGANPDAKDHY------- 138
Query: 201 ETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRL 260
+H A + G+ ++ +L+ A+ N D TPLH A + R+
Sbjct: 139 -------------DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 261 EVCSLLLSEGADPTLHNCHSKSAIDVA 287
E L+++GA + N K+ + VA
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 86.1 bits (213), Expect = 7e-19
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 16/123 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ + D T LH A + G +IV LLQ G + K+ G +PL + G
Sbjct: 27 LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
++ L G + L AA K LL N + +D T +H
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA--TAMH 144
Query: 1170 LAA 1172
AA
Sbjct: 145 RAA 147
Score = 78.0 bits (192), Expect = 4e-16
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ G VN D ++PLH AA+ G +IV+ LL GA + N++G TPL +
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 1123 DVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
+++ +L +A+ AA KGNL V LL + N +D +G TPLH
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN--TPLH 177
Query: 1170 LAAGEKR 1176
LA E+R
Sbjct: 178 LACDEER 184
Score = 64.9 bits (158), Expect = 1e-11
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 1079 TPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAA 1138
+ A + ++ +L + ++ ++D T L A
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW--------------------AC 48
Query: 1139 KKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G+ V+ LL +N +D G +PLH+AA
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDKDDAGW--SPLHIAA 81
Score = 61.0 bits (148), Expect = 2e-10
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 23/113 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GAN + D + T +H AAAKG +V +LL + A + ++ +G TPL L E
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 1123 DVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEK 1175
+ + L A +I + + + TPL +A G
Sbjct: 186 EEAKFLVTQGA--------------------SIYIENKEEK--TPLQVAKGGL 216
Score = 56.0 bits (135), Expect = 1e-08
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 736 EKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLS 795
E + +LA ++ + +L + D +TALH T+ V LL
Sbjct: 2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 796 HNAD 799
Sbjct: 62 LGVP 65
Score = 53.3 bits (128), Expect = 1e-07
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ + A+ N+ D TPLH A + + + + L+ GA +N++ TPL + + G
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK-GGLG 217
Query: 1124 VSDLL 1128
+
Sbjct: 218 LILKR 222
Score = 47.6 bits (113), Expect = 8e-06
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPN 51
R + ++L+ GASI+ + PL A G ++ L +
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 43.3 bits (102), Expect = 2e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADP 1103
V GA++ + + + TPL AKG ++ L G +
Sbjct: 192 VTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEEA 229
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 129 bits (327), Expect = 4e-35
Identities = 38/177 (21%), Positives = 57/177 (32%), Gaps = 52/177 (29%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
++ L AA +V V LL GAD NA +++G P+ G
Sbjct: 5 IHMLGGSSD--AGLATAAARGQVETVRQLLEAGADP----NALNRFGRRPIQVMMM-GSA 57
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGL 545
Q++ LL L G + N D A
Sbjct: 58 QVAELL-LL---------------HGAE------------PNCADPATLTR--------- 80
Query: 546 VPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGAD 595
P+H+A G + +L + GA ++V D W P+ A A+ L D
Sbjct: 81 -PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 114 bits (288), Expect = 8e-30
Identities = 35/161 (21%), Positives = 54/161 (33%), Gaps = 52/161 (32%)
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
+ + L AA +G+ + L L G D
Sbjct: 2 SPGI----HMLGGSSDAGLATAAARGQVETVRQL-LE---------------AGAD---- 37
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
NA + GR P+ G +V E+L+ HGA N AD
Sbjct: 38 --------PNALNRFGR--RPIQVMM----------MGSAQVAELLLLHGAEPNCADPAT 77
Query: 578 FT-PLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
T P+H+AA L + GA +++ + G+ +DLA
Sbjct: 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Score = 96.7 bits (242), Expect = 1e-23
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
+++ L AAA+G+ + VR LL+ GADP+ NR G P+ ++ G V++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAE 61
Query: 1127 LL-------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
LL + DAA++G L + L A ++ DA GR P+ LA
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR--LPVDLAE 119
Score = 94.8 bits (237), Expect = 7e-23
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 33/128 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT- 59
G+ + V LL +GA +A + G P+ G A V LLL A PN D T
Sbjct: 22 RGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTR 80
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
P+H+AA +G D + GA + +
Sbjct: 81 PVHDAAREGFLDTL-------------VVL------------------HRAGARLDVCDA 109
Query: 120 EGQTPLDL 127
G+ P+DL
Sbjct: 110 WGRLPVDL 117
Score = 93.3 bits (233), Expect = 2e-22
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 1 YGRKDVVEYLLASGASIHARD-DGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFT 59
G V E LL GA + D P+H+A G D + +L A A + D W
Sbjct: 54 MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 60 PLHEAAAKGKTDV 72
P+ A +G D+
Sbjct: 114 PVDLAEEQGHRDI 126
Score = 84.4 bits (210), Expect = 3e-19
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
L A +G V++ L + N + + G P+ + + E L+ GA
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMMM----GSAQVAELLLLHGAEP 70
Query: 735 NEKNKE-LLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVL 793
N + L P+H AA G LD L L R GA++++ D G+ + R L
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Query: 794 LSHNAD 799
+ D
Sbjct: 131 HAATGD 136
Score = 79.0 bits (196), Expect = 2e-17
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 1064 VKHGANVNVADLWKFT-PLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGD 1121
+ HGA N AD T P+H+AA +G D + +L + GA + G P+DL +G
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Query: 1122 QDVSDLLRGNSA 1133
+D++ L +
Sbjct: 124 RDIARYLHAATG 135
Score = 79.0 bits (196), Expect = 2e-17
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
D L A + V L+ GA N N+ PI + +G V + LL G
Sbjct: 12 SDAGLATAAAR---GQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67
Query: 765 AKVNLVDVLGQT-ALHRTARDDKTQAVRVLLSHNAD 799
A+ N D T +H AR+ + VL A
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Score = 78.6 bits (195), Expect = 3e-17
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
P+H+A G + +L +AGA ++ D W P+ A + ++ L + D
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 74.4 bits (184), Expect = 8e-16
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFT-PLHEAASKSRLEVCSLLLSEGAD 272
G P+ G +V E+L+ GA N D T P+H+AA + L+ +L GA
Sbjct: 45 GRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Query: 273 PTLHNCHSKSAIDVA 287
+ + + +D+A
Sbjct: 104 LDVCDAWGRLPVDLA 118
Score = 74.0 bits (183), Expect = 1e-15
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
L A + G E L++AGA+ NA++ + P+ +V LLL GA+P
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEP 70
Score = 67.1 bits (165), Expect = 3e-13
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
G D + L +GA + D G P+ A GH D+ R L A +
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 65.5 bits (161), Expect = 1e-12
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 731 GAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAV 790
++ A + AA G ++ + LL GA N ++ G+ + Q
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 791 RVLLSHNAD 799
+LL H A+
Sbjct: 61 ELLLLHGAE 69
Score = 60.5 bits (148), Expect = 6e-11
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD 1102
+ GA ++V D W P+ A +G DI R L D
Sbjct: 98 HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 51.7 bits (125), Expect = 7e-08
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 236 AGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
++ + L AA++ ++E LL GADP N + I V
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52
Score = 41.7 bits (99), Expect = 2e-04
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGAN 239
G +P+ A GH ++ L A +
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 40.5 bits (96), Expect = 5e-04
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 31/80 (38%)
Query: 46 ADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRS 105
+ + L AAA+G+ + + +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETV-------------RQL---------------- 31
Query: 106 CYLAHGADPFLKNQEGQTPL 125
L GADP N+ G+ P+
Sbjct: 32 --LEAGADPNALNRFGRRPI 49
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 134 bits (339), Expect = 8e-35
Identities = 28/229 (12%), Positives = 55/229 (24%), Gaps = 59/229 (25%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
L A G+M V + + G T + A N V++V Y L+
Sbjct: 99 LYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGW-KTSFYHAVMLNDVSIVSYFLSEIPS-- 154
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ +H + G + LL L
Sbjct: 155 ---TFDLAILLSCIHITIKNGHVDMMILL-LD---------------YMTS--------- 186
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
N ++ P + A E+ + L K+ N+ +
Sbjct: 187 ---TNTNNSLLF--IPD--------IKLAIDNKDIEMLQALFKYDINIY-------SANL 226
Query: 583 EAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKK 624
E AK +++ + + + + +
Sbjct: 227 ENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275
Score = 130 bits (330), Expect = 1e-33
Identities = 34/244 (13%), Positives = 69/244 (28%), Gaps = 61/244 (25%)
Query: 375 GYTALQVAGENSKK-----LLQEPPSV--VDLESQLLEASKGGDMTVVTRLLSSCPHIVN 427
G++A A ++ LL ++ E L +A+ D +V LL S +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD-S 89
Query: 428 CRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQL 487
D G T L++A + V+ + + T + A +
Sbjct: 90 QFDDKGN--TALYYAVDSGNMQTVKLFVKKNWRLMFYGK---TGWKTSFYHAVMLNDVSI 144
Query: 488 SALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVP 547
V ++ + +H
Sbjct: 145 -----------------------------VSYFLSEIPSTFDLAILL--SCIHITI---- 169
Query: 548 LHNACSYGHYEVTEMLVKHGANVNVADLWKFTP-LHEAA-------AKALLQHGADINLK 599
GH ++ +L+ + + N + F P + A +AL ++ +I
Sbjct: 170 -----KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224
Query: 600 NTDG 603
N +
Sbjct: 225 NLEN 228
Score = 117 bits (295), Expect = 6e-29
Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 55/181 (30%)
Query: 439 LHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAA 498
L + ++ L D D G + + A +L L L+
Sbjct: 4 LSRINTWK-SKQLKSFL-SSKDT----FKADVHGHSASYYAIADNNVRLVCTL-LN---- 52
Query: 499 NDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYE 558
G N + PLH AA + +
Sbjct: 53 -----------AGAL------------KNLLE----NEFPLHQAA---------TLEDTK 76
Query: 559 VTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDG-KTALDLA 610
+ ++L+ G + + D T L+ A K ++ + G KT+ A
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136
Query: 611 V 611
V
Sbjct: 137 V 137
Score = 108 bits (273), Expect = 4e-26
Identities = 36/298 (12%), Positives = 79/298 (26%), Gaps = 93/298 (31%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G + A + + + L+ AGA N ++ PLH+AA+ ++ +LL G D
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPY 332
+ + +A L A G+ VK F+ + + F
Sbjct: 89 SQFDDKGNTA---------------------LYYAVDSGNMQTVKLFVKKNWRLMFYGKT 127
Query: 333 TGDTPLPGTLLIDLLSDDKEFITVAEEMQATVR---EHRDNGQSG--GYTALQVAGENSK 387
T + V + V + + + + +N
Sbjct: 128 GWKTSF--------------YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGH 173
Query: 388 KLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTP-LHFAAGYN 446
++ L LL N + P + A
Sbjct: 174 V------DMMIL---LL--DYMTS--------------TNTNNSLLF--IPDIKLAIDNK 206
Query: 447 RVAVVEYLLAHGADVHSKD----------------------NATDKWGFTPLHEAAQK 482
+ +++ L + +++S + + + + +
Sbjct: 207 DIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264
Score = 96.8 bits (242), Expect = 4e-22
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ GA N+ + PLH+AA IV++LL G D S+ + G T L V G+
Sbjct: 51 LNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNM 108
Query: 1123 DVSDLL--RG-----------NSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLH 1169
L + ++ A ++ V L+ A + +H
Sbjct: 109 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL--SCIH 166
Query: 1170 LAA 1172
+
Sbjct: 167 ITI 169
Score = 92.6 bits (231), Expect = 1e-20
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 17/124 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDG-ATPLDL-VREGD 1121
+ G + + D T L+ A G V+L ++ + G T V D
Sbjct: 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141
Query: 1122 QDVSDLL-----------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP-L 1168
+ S + K G++ + LL + N ++ P +
Sbjct: 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF--IPDI 199
Query: 1169 HLAA 1172
LA
Sbjct: 200 KLAI 203
Score = 89.9 bits (224), Expect = 1e-19
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 677 LEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNE 736
L ++K FL+S + G + + A+ +V +L+ GA N
Sbjct: 4 LSRINTWKSKQLKSFLSSKDTFKADVH-GHSASYYAIAD---NNVRLVCTLLNAGALKNL 59
Query: 737 KNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSH 796
E P+H AA L ++ LL G + D G TAL+ Q V++ +
Sbjct: 60 LENE--FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117
Query: 797 NAD 799
N
Sbjct: 118 NWR 120
Score = 88.7 bits (221), Expect = 3e-19
Identities = 23/136 (16%), Positives = 37/136 (27%), Gaps = 20/136 (14%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNF-T 59
+V+ LL SG DD G L+ A G+ V+L ++ + + T
Sbjct: 72 LEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKT 131
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGI---------GGGTGCPMHKDRSCYL-A 109
+ A + YF + + G H D L
Sbjct: 132 SFYHAVMLNDVSIV--SYFLSEIPSTFDLAILLSCIHITIKNG-------HVDMMILLLD 182
Query: 110 HGADPFLKNQEGQTPL 125
+ N P
Sbjct: 183 YMTSTNTNNSLLFIPD 198
Score = 88.0 bits (219), Expect = 5e-19
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+V LL +GA + + PLH A + +V++LL + + + D+ T
Sbjct: 41 DNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98
Query: 61 LHEAAAKGKTDV 72
L+ A G
Sbjct: 99 LYYAVDSGNMQT 110
Score = 86.8 bits (216), Expect = 1e-18
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 23/134 (17%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+V Y L+ S L +H GH D++ LLL+ + NT ++ F P
Sbjct: 139 LNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197
Query: 61 -LHEAAAKGKTDVC-------IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHG 111
+ A ++ I IY A + + + +
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIYSANL--------ENVLLD-----DAEIAKMIIEKH 244
Query: 112 ADPFLKNQEGQTPL 125
+ + +
Sbjct: 245 VEYKSDSYTKDLDI 258
Score = 86.8 bits (216), Expect = 1e-18
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDV 1124
+ AD+ + + A A +V LL GA + + PL D +
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKI 77
Query: 1125 SDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
+L +GN+AL A GN+ V+ + + + G T + A
Sbjct: 78 VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK-TSFYHA 136
Query: 1172 A 1172
Sbjct: 137 V 137
Score = 86.0 bits (214), Expect = 2e-18
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
N + PLH A T + IV+ L+ G ++ + + ++ A D G++
Sbjct: 57 KNLLE---NEFPLHQAATL---EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110
Query: 757 LDTLLRLGAKVNLVDVLG-QTALHRTARDDKTQAVRVLLSHNAD 799
+ ++ ++ G +T+ + + V LS
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 154
Score = 83.3 bits (207), Expect = 2e-17
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 13/119 (10%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL---VREG 1120
+ + + +H G D++ LLL + + N P + +
Sbjct: 149 LSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD-IKLAIDNK 206
Query: 1121 DQDVSDLL--RG---NSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAG 1173
D ++ L SA L+ + + ++ +
Sbjct: 207 DIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKD--LDIVKNNK 263
Score = 78.0 bits (193), Expect = 1e-15
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 34/125 (27%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ ++ L S D G + A + + +V LL A A N +N P
Sbjct: 9 TWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FP 65
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH+AA T + + + L G D + +
Sbjct: 66 LHQAATLEDTKIV-------------KIL------------------LFSGLDDSQFDDK 94
Query: 121 GQTPL 125
G T L
Sbjct: 95 GNTAL 99
Score = 76.4 bits (189), Expect = 3e-15
Identities = 28/261 (10%), Positives = 67/261 (25%), Gaps = 51/261 (19%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
PLH A + ++ ++L+ +G + + D T L+ A ++ L + +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL--- 121
Query: 277 NCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDT 336
+ K+ + A D S V FL+ F +
Sbjct: 122 MFYGKTGWKTS-----------------FYHAVMLNDVSIVSYFLSEIPSTFDL-AILLS 163
Query: 337 PLPGTLLIDLLSDDKEFITVAE---EMQATVREHRDNGQSGGYTALQVAGENSKKLLQEP 393
+ ++ + + + + + +++A +N
Sbjct: 164 CI-------HITIKNGHVDMMILLLDYMTSTNTNNSLLFI---PDIKLAIDNKDI----- 208
Query: 394 PSVVDL--------ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGY 445
++ S LE D + ++ +
Sbjct: 209 -EMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEY-KSDSYTKD--LDIVKNNKL 264
Query: 446 NRVAVVEYLLAHGADVHSKDN 466
+ + L K N
Sbjct: 265 DEIISKNKELRLMYVNCVKKN 285
Score = 74.9 bits (185), Expect = 1e-14
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+ F T + AV +IV + + LL+ IH+ GH+D+
Sbjct: 121 LMFYGKTGWKTSFYHAVML---NDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDM 176
Query: 757 LDTLLRLGAKVNLVDVLGQT-ALHRTARDDKTQAVRVLLSHNAD 799
+ LL N + L + + + ++ L ++ +
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220
Score = 69.9 bits (172), Expect = 5e-13
Identities = 4/70 (5%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
++++ L +I++ A++ ++++E +
Sbjct: 205 NKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLD 257
Query: 61 LHEAAAKGKT 70
+ + +
Sbjct: 258 IVKNNKLDEI 267
Score = 61.4 bits (150), Expect = 4e-10
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 17/107 (15%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLL-------- 1128
K+ ++ L D K + G + + + + + L
Sbjct: 2 MDLSR--INTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58
Query: 1129 --RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
L AA + V+ LL + + + D +G T L+ A
Sbjct: 59 LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN--TALYYAV 103
Score = 58.7 bits (143), Expect = 3e-09
Identities = 9/101 (8%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 705 GDTP-LHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
P + A+ + K ++++L + ++ N L ++ ++
Sbjct: 194 LFIPDIKLAIDN---KDIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEK 243
Query: 764 GAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSIVS 804
+ + + + D+ ++S N + ++
Sbjct: 244 HVEYKSDSYTKDLDIVKNNKLDE------IISKNKELRLMY 278
Score = 55.2 bits (134), Expect = 4e-08
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G+ + + + + D+ + + A + + + + LL+ GA
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Score = 40.2 bits (95), Expect = 0.002
Identities = 2/55 (3%), Positives = 10/55 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
++ + ++ + + L + N
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
Score = 30.6 bits (70), Expect = 3.1
Identities = 3/43 (6%), Positives = 9/43 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKK 1106
++ K + + + L+ K
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 131 bits (331), Expect = 2e-34
Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 49/215 (22%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
LL+A+ G++ VV + + + + +G T LH A ++V++L+ GA+V
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDP-SQPNEEGI--TALHNAICGANYSIVDFLITAGANV- 80
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
N+ D G+TPLH AA T + L + G
Sbjct: 81 ---NSPDSHGWTPLHCAASCNDTVICMAL-VQ---------------HGAA--------- 112
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ A + T G+ + L ++ + + L
Sbjct: 113 ---IFATTLSDGA-TAFEKCD-------PYREGYADCATYLADVEQSMGLMNSGAVYALW 161
Query: 583 EAAAK------ALLQHGADINLKNTDGKTALDLAV 611
+ +A+ + ++ +T A
Sbjct: 162 DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAA 196
Score = 122 bits (309), Expect = 2e-31
Identities = 38/204 (18%), Positives = 57/204 (27%), Gaps = 54/204 (26%)
Query: 426 VNCRDLDGRH-STPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
+ L AA + VV+ + D + ++ G T LH A
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP----SQPNEEGITALHNAICGAN 66
Query: 485 TQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAG 544
+ L ++ G + VN+ D+ G TPLH AA
Sbjct: 67 YSIVDFL-IT---------------AGAN------------VNSPDSHGW--TPLHCAA- 95
Query: 545 LVPLHNACSYGHYEVTEMLVKHGANVNVADL-WKFTPLHEAA---------AKALLQHGA 594
S + LV+HGA + L T + A L
Sbjct: 96 --------SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147
Query: 595 DINLKNTDGKTALDLAVPCTRAVL 618
+ L N+ AL L
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL 171
Score = 114 bits (288), Expect = 1e-28
Identities = 39/171 (22%), Positives = 55/171 (32%), Gaps = 48/171 (28%)
Query: 451 VEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACK 510
+ +L A L +AA G ++ + +
Sbjct: 1 MRSVLRKAGSPRKARRARLN-PLVLLLDAALTGELEVVQQA-VK---------------E 43
Query: 511 GGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
D + + G T LH NA +Y + + L+ GANV
Sbjct: 44 MND------------PSQPNEEGI--TALH---------NAICGANYSIVDFLITAGANV 80
Query: 571 NVADLWKFTPLHEAA-------AKALLQHGADINLKNT-DGKTALDLAVPC 613
N D +TPLH AA AL+QHGA I DG TA + P
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY 131
Score = 99.3 bits (248), Expect = 2e-23
Identities = 38/247 (15%), Positives = 66/247 (26%), Gaps = 51/247 (20%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
LV L +A G EV + VK + + + T LH A L+ GA++
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 597 NLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCS 654
N ++ G T L A C + L++ G + T G T C
Sbjct: 81 NSPDSHGWTPLHCAASC-------NDTVICMALVQH----GAAIFATTLSDGATAFEKCD 129
Query: 655 CCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT-GDTPLHCAV 713
+G+ + +L + + L
Sbjct: 130 PY--------------REGY--AD---------CATYLADVEQSMGLMNSGAVYALWDYS 164
Query: 714 TSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD-VLDTLLRLGAKVNLVDV 772
+ + + + ++ AA G V L +V
Sbjct: 165 A----EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRS 220
Query: 773 LGQTALH 779
+ H
Sbjct: 221 KVKHHHH 227
Score = 95.4 bits (238), Expect = 5e-22
Identities = 33/149 (22%), Positives = 50/149 (33%), Gaps = 39/149 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+ + ++ G+ LHNA + +V L+ A AN N+ D+ +TP
Sbjct: 31 TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKN- 118
LH AA+ T +C L HGA F
Sbjct: 91 LHCAASCNDTVIC--------------------------------MALVQHGAAIFATTL 118
Query: 119 QEGQTPLDLTV-----AEDVRSLLQDAMA 142
+G T + D + L D
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQ 147
Score = 89.6 bits (223), Expect = 4e-20
Identities = 30/185 (16%), Positives = 49/185 (26%), Gaps = 50/185 (27%)
Query: 406 ASKGGDMTVVTRLLSSCPH--IVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHS 463
A G + ++V L++ VN D G TPLH AA N + L+ HGA + +
Sbjct: 61 AICGANYSIVDFLIT---AGANVNSPDSHGW--TPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 464 KDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNP 523
G T + + G L +
Sbjct: 116 TT---LSDGATAFEKCD---------------------------PYREGYADCATYLADV 145
Query: 524 Q-TVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
+ ++ ++ L S + V D + T
Sbjct: 146 EQSMGLMNSGAV--YALWDY----------SAEFGDELSFREGESVTVLRRDGPEETDWW 193
Query: 583 EAAAK 587
AA
Sbjct: 194 WAALH 198
Score = 86.2 bits (214), Expect = 7e-19
Identities = 42/268 (15%), Positives = 68/268 (25%), Gaps = 65/268 (24%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
LV L +A G EV + +K + + + T LH A + + L++ GA+
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTS---DVVNFKH 330
+ H + + A C L +
Sbjct: 81 NSPDSHGWTPLHCAA-----------SCND--TVIC---------MALVQHGAA-IFATT 117
Query: 331 PYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLL 390
G T + +E A V + SG AL S +
Sbjct: 118 LSDGATAF------EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY---SAEFG 168
Query: 391 QEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAV 450
E L +G +T V RD T +AA + +
Sbjct: 169 DE-----------LSFREGESVT------------VLRRDGPEE--TDWWWAALHGQEGY 203
Query: 451 VE-YLLAHGADVHSKDNATDKWGFTPLH 477
V V + + H
Sbjct: 204 VPRNYFGLFPRVKPQRSKVK----HHHH 227
Score = 85.8 bits (213), Expect = 8e-19
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 700 KHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDT 759
+ L A + +V+ +++ ++ N+E + +H A + ++D
Sbjct: 16 RARLNPLVLLLDAALT---GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF 72
Query: 760 LLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
L+ GA VN D G T LH A + T L+ H A
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Score = 84.6 bits (210), Expect = 2e-18
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 19/135 (14%)
Query: 1064 VKHGANVNVADLWKFTP---LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VRE 1119
++ + A + P L +AA G+ ++V+ ++ DPS+ N +G T L +
Sbjct: 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64
Query: 1120 GDQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNST 1166
+ + D L G + L AA + L+ I T
Sbjct: 65 ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA-T 123
Query: 1167 PLHLAAGEKR-HLLM 1180
+ +
Sbjct: 124 AFEKCDPYREGYADC 138
Score = 78.1 bits (193), Expect = 4e-16
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 9/137 (6%)
Query: 668 KDEFKG-HCLLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVE 725
+ LL+A G+ V++ + + + G T LH A+ +IV+
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE-GITALHNAICG---ANYSIVD 71
Query: 726 SLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDV-LGQTALHRTARD 784
LI GA++N + P+H AA + L++ GA + + G TA +
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY 131
Query: 785 DKTQA--VRVLLSHNAD 799
+ A L
Sbjct: 132 REGYADCATYLADVEQS 148
Score = 77.3 bits (191), Expect = 7e-16
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 12/133 (9%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD-NWNFT 59
+V++L+ +GA++++ D G PLH A S + L++ A + T
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLA-------HGA 112
+ + Y A+ G + + +
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGL--MNSGAVY--ALWDYSAEFGDELSFREGESV 179
Query: 113 DPFLKNQEGQTPL 125
++ +T
Sbjct: 180 TVLRRDGPEETDW 192
Score = 74.2 bits (183), Expect = 8e-15
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPL 61
G D YL S+ + G ++ L + + D + RD T
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDW 192
Query: 62 HEAAAKGKTDVCIGIYFAEHSSKSNQ 87
AA G+ YF Q
Sbjct: 193 WWAALHGQEGYVPRNYFGLFPRVKPQ 218
Score = 71.9 bits (177), Expect = 4e-14
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 724 VESLIRKGAHLNEKNKEL---LAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
+ S++RK + + L + AA G L+V+ ++ + + G TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 781 TARDDKTQAVRVLLSHNAD 799
V L++ A+
Sbjct: 61 AICGANYSIVDFLITAGAN 79
Score = 68.4 bits (168), Expect = 7e-13
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN-KELLAPIHLAADL--GHLDVLDTLL 761
G TPLHCA + I +L++ GA + + G+ D L
Sbjct: 87 GWTPLHCAASC---NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143
Query: 762 RLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ + L++ AL + + + +
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVT 180
Score = 60.7 bits (148), Expect = 3e-10
Identities = 18/113 (15%), Positives = 26/113 (23%), Gaps = 27/113 (23%)
Query: 1064 VKHGANVNVADL-WKFTPLHEAAA--KGKADIVRLLLQHGADPSKKNRDGATPLDLVREG 1120
V+HGA + L T + +G AD L N
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA------- 159
Query: 1121 DQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
L D + + + + RD T AA
Sbjct: 160 -------------LWDYSAE-FGDELSFREGESVTVLRRDGPEE--TDWWWAA 196
Score = 60.4 bits (147), Expect = 5e-10
Identities = 11/94 (11%), Positives = 18/94 (19%), Gaps = 2/94 (2%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+ G T L + N + + + D
Sbjct: 113 IFATTLSDGATAFEKCDPY-REGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDE 170
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAV 790
L V D +T A + V
Sbjct: 171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 55.0 bits (133), Expect = 3e-08
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 20/81 (24%)
Query: 1093 VRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTA 1152
+R +L+ P K R PL LLDAA G L VQ+ +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPL-----------------VLLLDAALTGELEVVQQAVKE 43
Query: 1153 D-NINCRDAQGRNSTPLHLAA 1172
+ + + +G T LH A
Sbjct: 44 MNDPSQPNEEGI--TALHNAI 62
Score = 51.5 bits (124), Expect = 4e-07
Identities = 10/108 (9%), Positives = 26/108 (24%), Gaps = 21/108 (19%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGD 1121
+ ++ + + L + +A+ D + +++ T
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWW----- 194
Query: 1122 QDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLH 1169
AA G G V + + + + H
Sbjct: 195 ---------------AALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 49.2 bits (118), Expect = 2e-06
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 7/59 (11%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGR 484
+ + L + + + V +D T AA G+
Sbjct: 149 MGLMNSGAV--YALWDYS-AEFGDELSFREGESVTVLRRDGP----EETDWWWAALHGQ 200
Score = 42.2 bits (100), Expect = 4e-04
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 36/90 (40%)
Query: 40 VRLLLEADANPNTRDNWNFTP---LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGT 96
+R +L +P P L +AA G
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTG---------------------------- 32
Query: 97 GCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+ DP N+EG T L
Sbjct: 33 ----ELEVVQQAVKEMNDPSQPNEEGITAL 58
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 125 bits (318), Expect = 7e-34
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 49/172 (28%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ R T LH A+ + VEYLL +G+D N D G+TPLHEA G ++ LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP----NVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L VN +PLH AA
Sbjct: 63 -LQ---------------HKAL------------VNTTGYQND--SPLHDAA-------- 84
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK------ALLQHGADIN 597
GH ++ ++L+ +GA+ N +++ P+ + L + +
Sbjct: 85 -KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135
Score = 123 bits (312), Expect = 5e-33
Identities = 46/160 (28%), Positives = 59/160 (36%), Gaps = 51/160 (31%)
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
G D T+ G T LH A+ KG L L G D
Sbjct: 1 GIDP-----FTNHRGETLLHIASIKGDIPSVEYL-LQ---------------NGSD---- 35
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
N +D AG PLH AC++GH +V E+L++H A VN
Sbjct: 36 --------PNVKDHAGW-----------TPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 578 FTPLHEAA-------AKALLQHGADINLKNTDGKTALDLA 610
+PLH+AA K LL +GA N N G +D
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Score = 111 bits (281), Expect = 7e-29
Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 31/138 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G VEYLL +G+ + +D G PLH AC+ GH VV LLL+ A NT N +P
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH+AA G D+ L++GA N
Sbjct: 80 LHDAAKNGHVDIV-------------------------------KLLLSYGASRNAVNIF 108
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G P+D T E ++SLL
Sbjct: 109 GLRPVDYTDDESMKSLLL 126
Score = 96.0 bits (240), Expect = 2e-23
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH AC++GH +V E+L++ A VN +PLH+AA +++ LLLS GA
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 274 TLHNCHSKSAIDVA 287
N +D
Sbjct: 103 NAVNIFGLRPVDYT 116
Score = 93.6 bits (234), Expect = 2e-22
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G LH A G E L+++G++ NV D +TPLHEA + LLQH A +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 597 NLKNTDGKTALDLAV 611
N + L A
Sbjct: 70 NTTGYQNDSPLHDAA 84
Score = 87.5 bits (218), Expect = 2e-20
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++H A VN +PLH+AA G DIV+LLL +GA + N G P+D E +
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122
Query: 1123 DVSDLLRGNSA 1133
+ L N +
Sbjct: 123 SLLLLPEKNES 133
Score = 86.7 bits (216), Expect = 4e-20
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+++G++ NV D +TPLHEA G +V LLLQH A + +P
Sbjct: 30 LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP---------- 79
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
L DAAK G++ V+ LL+ + N + G P+ E
Sbjct: 80 ----------LHDAAKNGHVDIVKLLLSYGASRNAVNIFGL--RPVDYTDDE 119
Score = 85.9 bits (214), Expect = 8e-20
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+T LH A VE L++ G+ N K+ P+H A + GHL V++ LL+
Sbjct: 10 GETLLHIASIK---GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN + LH A++ V++LLS+ A
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 82.5 bits (205), Expect = 1e-18
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 679 ACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEK 737
A +GD V+ L + N K + G TPLH A +VE L++ A +N
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEAC---NHGHLKVVELLLQHKALVNTT 72
Query: 738 NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
+ +P+H AA GH+D++ LL GA N V++ G + T + + + +
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Query: 798 ADTS 801
+ ++
Sbjct: 133 SSSA 136
Score = 80.2 bits (199), Expect = 8e-18
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G LH A G E L++ G++ N D +TPLHEA + L+V LLL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Score = 71.3 bits (176), Expect = 9e-15
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH+A GH ++ ++L+ GA+ NA++++ P+ +S + L +
Sbjct: 79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 60.9 bits (149), Expect = 4e-11
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNT 52
G D+V+ LL+ GAS +A + GL P+ ++ L + +++ +
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 50.5 bits (122), Expect = 2e-07
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGAD 1102
+ +GA+ N +++ P+ + ++ L ++ +
Sbjct: 96 LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 42.8 bits (102), Expect = 8e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 237 GANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G + + T LH A+ K + LL G+DP
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDP 36
Score = 36.6 bits (86), Expect = 0.012
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNA 242
GL P+ + + K ++ +
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 36.6 bits (86), Expect = 0.013
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 34/79 (43%)
Query: 48 ANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY 107
+P T ++ T LH A+ KG Y
Sbjct: 2 IDPFT-NHRGETLLHIASIKG--------------------------------DIPSVEY 28
Query: 108 L-AHGADPFLKNQEGQTPL 125
L +G+DP +K+ G TPL
Sbjct: 29 LLQNGSDPNVKDHAGWTPL 47
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 122 bits (310), Expect = 6e-33
Identities = 66/170 (38%), Positives = 79/170 (46%), Gaps = 52/170 (30%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+GR TPLH AA + VV+ LL GADV NA DK G TPLH AA+ G ++ LL
Sbjct: 1 NGR--TPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L G D VNA+D GR TPLH AA
Sbjct: 55 -LE---------------AGAD------------VNAKDKNGR--TPLHLAA-------- 76
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGA 594
GH EV ++L++ GA+VN D TPLH AA K LL+ GA
Sbjct: 77 -RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 101 bits (255), Expect = 2e-25
Identities = 54/146 (36%), Positives = 68/146 (46%), Gaps = 46/146 (31%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
G TPLH AA+ G ++ LL L G D VNA+D
Sbjct: 2 GRTPLHLAARNGHLEVVKLL-LE---------------AGAD------------VNAKDK 33
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
GR TPLH AA GH EV ++L++ GA+VN D TPLH AA
Sbjct: 34 NGR--TPLHLAA---------RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 586 -AKALLQHGADINLKNTDGKTALDLA 610
K LL+ GAD+N K+ +G+T L LA
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 92.4 bits (231), Expect = 3e-22
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TP
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 61 LHEAAAKGKTDV 72
LH AA G +V
Sbjct: 105 LHLAARNGHLEV 116
Score = 92.4 bits (231), Expect = 3e-22
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 31/125 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TP
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G +V L GAD K++
Sbjct: 72 LHLAARNGHLEVV-------------------------------KLLLEAGADVNAKDKN 100
Query: 121 GQTPL 125
G+TPL
Sbjct: 101 GRTPL 105
Score = 87.4 bits (218), Expect = 2e-20
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 23/110 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
++ GA+VN D TPLH AA G ++V+LLL+ GAD + K+++G TPL L
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL------- 74
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
AA+ G+L V+ LL A ++N +D GR TPLHLAA
Sbjct: 75 -------------AARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA 109
Score = 85.5 bits (213), Expect = 8e-20
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + +V+ L+ GA +N K+K P+HLAA GHL+V+ LL G
Sbjct: 2 GRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN D G+T LH AR+ + V++LL AD
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 82.8 bits (206), Expect = 7e-19
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A +V+ L+ GA +N K+K P+HLAA GHL+V+ LL G
Sbjct: 35 GRTPLHLAA---RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
A VN D G+T LH AR+ + V++LL A
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 79.3 bits (197), Expect = 1e-17
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 78.2 bits (194), Expect = 3e-17
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 75.1 bits (186), Expect = 4e-16
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GA
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 72.4 bits (179), Expect = 4e-15
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
++ GA+VN D TPLH AA G ++V+LLL+ GAD + K+++G TPL L R G
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114
Query: 1123 DVSDLL 1128
+V LL
Sbjct: 115 EVVKLL 120
Score = 66.2 bits (163), Expect = 4e-13
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 33/100 (33%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
PLH A GH +VV+LLLEA A+ N +D TPLH AA G +V +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV------VK------ 52
Query: 87 QYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L GAD K++ G+TPL
Sbjct: 53 --------------------LLLEAGADVNAKDKNGRTPL 72
Score = 62.4 bits (153), Expect = 9e-12
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 54.7 bits (133), Expect = 6e-09
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
++ GA+VN D TPLH AA G ++V+LLL+ GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 38.1 bits (90), Expect = 0.003
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 248 FTPLHEAASKSRLEVCSLLLSEGAD 272
TPLH AA LEV LLL GAD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGAD 27
Score = 36.2 bits (85), Expect = 0.013
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G + L AA+ G+L V+ LL A ++N +D GR TPLHLAA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA 43
Score = 31.9 bits (74), Expect = 0.35
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
G TPLH A +V+ L+ GA+
Sbjct: 101 GRTPLHLAA---RNGHLEVVKLLLEAGAY 126
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 125 bits (316), Expect = 3e-32
Identities = 42/253 (16%), Positives = 70/253 (27%), Gaps = 63/253 (24%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G T L A N + + + LL+ + + L + G
Sbjct: 43 GKTCLMKAVLNLQDGVNA---CIMP---LLQI---DKDSGNPKPLVNAQ--CTDEFYQGH 91
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN---------ATDKWGFTPLHEAAQKGRT 485
LH A + V+ L+ +GADVH + +G PL AA +
Sbjct: 92 S--ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 486 QLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA-- 543
+ L ++ P ++ A D+ G T LH
Sbjct: 150 DVVTYL-------------------------LENPHQPASLEATDSLGN--TVLHALVMI 182
Query: 544 -----GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQ 591
L G ++ L +++ TPL AA + +LQ
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Query: 592 HGADINLKNTDGK 604
+
Sbjct: 243 REFSGAAAHHHHH 255
Score = 96.8 bits (241), Expect = 2e-22
Identities = 43/231 (18%), Positives = 66/231 (28%), Gaps = 62/231 (26%)
Query: 403 LLEASKGGDMTVVTRLL-------SSCPHIVNCRDLDGRHSTPLHFAA---GYNRVAVVE 452
L G +T LL G+ T L A A +
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK--TCLMKAVLNLQDGVNACIM 63
Query: 453 YLLAHGAD-------VHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLREL 505
LL D V+++ G + LH A +K Q LL +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL-VE----------- 111
Query: 506 FEACKGGDLTKVKKLVNPQTVNARDTAG--RKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
G D V+ R +K F G +PL A ++V L
Sbjct: 112 ----NGAD------------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Query: 564 VKHG---ANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAV 611
+++ A++ D T LH A N+ +AL + +
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIA----------DNSPENSALVIHM 196
Score = 92.5 bits (230), Expect = 7e-21
Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 58/205 (28%)
Query: 437 TPLHFAAGYNRVAVV----EYLLAHGADVHSKDNATDKWGFTPLHEAA---QKGRTQLSA 489
L + EYL + + G T L +A Q G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 490 LLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLH 549
L L + + L A G LH
Sbjct: 64 PL-LQIDKDSGNPKPLVNA----------------QCTDEFYQGHS-----------ALH 95
Query: 550 NACSYGHYEVTEMLVKHGANVNVADLWKF-------------TPLHEAA-------AKAL 589
A + ++LV++GA+V++ +F PL AA L
Sbjct: 96 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Query: 590 LQHG---ADINLKNTDGKTALDLAV 611
L++ A + ++ G T L V
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALV 180
Score = 85.6 bits (212), Expect = 2e-18
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 23/128 (17%)
Query: 1064 VKHGANVNVADLWKF-------------TPLHEAAAKGKADIVRLLLQHG---ADPSKKN 1107
V++GA+V++ +F PL AA + D+V LL++ A +
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Query: 1108 RDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNST 1166
G T L + + NSAL+ G L +L + QG T
Sbjct: 170 SLGNTVLHALVMIADNS----PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL--T 223
Query: 1167 PLHLAAGE 1174
PL LAA E
Sbjct: 224 PLKLAAKE 231
Score = 85.6 bits (212), Expect = 2e-18
Identities = 29/142 (20%), Positives = 38/142 (26%), Gaps = 33/142 (23%)
Query: 1 YGRKDVVEYLLASGASIHARDDG-------------GLHPLHNACSFGHADVVRLLLE-- 45
V+ L+ +GA +H R G G PL A DVV LLE
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159
Query: 46 -ADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDR 104
A+ D+ T LH A +
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPE---NSALVIHMYD-------------GLLQM 203
Query: 105 SCYL-AHGADPFLKNQEGQTPL 125
L + N +G TPL
Sbjct: 204 GARLCPTVQLEEISNHQGLTPL 225
Score = 80.2 bits (198), Expect = 1e-16
Identities = 43/272 (15%), Positives = 68/272 (25%), Gaps = 74/272 (27%)
Query: 212 ALGLVPLHNA---CSYGHFEVTEMLIKAG-----------ANVNAMDLWQFTPLHEAASK 257
+ G L A G L++ A + LH A K
Sbjct: 41 STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100
Query: 258 SRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRV 317
L+ LL+ GAD + Q F L A
Sbjct: 101 RSLQCVKLLVENGAD--------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW--- 149
Query: 318 KKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYT 377
DVV L++ A++ D+ G T
Sbjct: 150 ------DVVT--------------YLLE-----------NPHQPASLEA-TDS---LGNT 174
Query: 378 ALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHST 437
L + + L+ G + + RL + + G T
Sbjct: 175 VLHALVMIADNSPENSA--------LVIHMYDGLLQMGARLCPTVQL-EEISNHQGL--T 223
Query: 438 PLHFAAGYNRVAVVEYLL---AHGADVHSKDN 466
PL AA ++ + ++L GA H +
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 76.0 bits (187), Expect = 4e-15
Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 36/163 (22%)
Query: 671 FKGHCLLEACRQGDPSRVK----------KFLTSDVVNFKHPYTGDTPLHCAVTSPYPKR 720
F L +G P + K+LT + TG T L AV +
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA--YTEGSTGKTCLMKAVLNLQDGV 58
Query: 721 KAIVESLIRKG-----------AHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNL 769
A + L++ A ++ + + +H+A + L + L+ GA V+L
Sbjct: 59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118
Query: 770 VD-------------VLGQTALHRTARDDKTQAVRVLLSHNAD 799
G+ L A + V LL +
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161
Score = 75.6 bits (186), Expect = 4e-15
Identities = 39/289 (13%), Positives = 74/289 (25%), Gaps = 67/289 (23%)
Query: 503 RELFEACKGGDLTKVKKLVN---------PQTVNARDTAGRKSTPLHFAAGLVPLHNACS 553
LF G ++ L+ + + G+ T L A
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK--TCLMKAV------LNLQ 55
Query: 554 YGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPC 613
G L++ + A + G +AL +A+
Sbjct: 56 DGVNACIMPLLQIDKDSGNPKPLV---------------NAQCTDEFYQGHSALHIAI-- 98
Query: 614 TRAVLSGDHKKEELL--------EAARMMGGGLHRYTWP-LGTTDIGWCSCCCKMELMFM 664
+ +LL A H+ T G + +C + +++
Sbjct: 99 ----EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV-- 152
Query: 665 PRIKDEFKGHCLLEACRQG-DPSRVKKF----LTSDVVNFKHPYTGDTPLHCAVTSPYPK 719
LLE Q L + V+ ++ L + Y
Sbjct: 153 ---------TYLLENPHQPASLEATDSLGNTVLHALVMI-ADNSPENSALVIHM---YDG 199
Query: 720 RKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
+ L N + L P+ LAA G +++ +L+
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 74.8 bits (184), Expect = 9e-15
Identities = 43/291 (14%), Positives = 78/291 (26%), Gaps = 71/291 (24%)
Query: 217 PLHNACSYGHFEVTEMLIK--------AGANVNAMDLWQFTPLHEAASKSR---LEVCSL 265
L + S G E L++ + T L +A +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 266 LLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDV 325
LL D + + K ++ T E L A + VK
Sbjct: 65 LLQIDKD----SGNPKPLVNAQCTDE------FYQGHSALHIAIEKRSLQCVK------- 107
Query: 326 VNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGEN 385
LL++ D ++H+ G L +A
Sbjct: 108 ----------------LLVE-NGADVH----LRACGRFFQKHQGTCFYFGELPLSLAACT 146
Query: 386 SKK-----LLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLH 440
+ LL+ P LE+ G+ T L H + + ++ L
Sbjct: 147 KQWDVVTYLLENPHQPASLEAT----DSLGN----TVL-----HALVMIADNSPENSALV 193
Query: 441 FAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ + L ++ G TPL AA++G+ ++ +
Sbjct: 194 IHMYDGLLQMGARLCPTVQLE----EISNHQGLTPLKLAAKEGKIEIFRHI 240
Score = 74.1 bits (182), Expect = 1e-14
Identities = 38/285 (13%), Positives = 68/285 (23%), Gaps = 75/285 (26%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTA 606
L + S G E L+++ N L + + GKT
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRW-NSKYL-----------------TDSAYTEGSTGKTC 46
Query: 607 LDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPR 666
L AV + ++ + + L + C +
Sbjct: 47 LMKAVL---------NLQDGVNACIMPL---LQIDKDSGNPKPLVNAQCTDE-------- 86
Query: 667 IKDEFKGHCLLEACRQGDPSRVKKFL-------------TSDVVNFKHPYTGDTPLHCAV 713
L A + VK + Y G+ PL A
Sbjct: 87 --FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Query: 714 TSPYPKRKAIVESLIRKG-------------------AHLNEKNKELLAPIHLAADLGHL 754
K+ +V L+ + N + + + G L
Sbjct: 145 ---CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL 201
Query: 755 DVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ L + + G T L A++ K + R +L
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 73.7 bits (181), Expect = 2e-14
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 13/111 (11%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
A + LH A K V+LL+++GAD + +
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH-------QGT 131
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLLTAD----NINCRDAQGRNSTPLHLAA 1172
G L AA V LL ++ D+ G T LH
Sbjct: 132 CFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN--TVLHALV 180
Score = 73.3 bits (180), Expect = 3e-14
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 1 YGRKDVVEYLLASG---ASIHARDDGG---LH-------------PLHNACSFGHADVVR 41
+ DVV YLL + AS+ A D G LH L G +
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205
Query: 42 LLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
L ++ TPL AA +GK ++
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236
Score = 62.9 bits (153), Expect = 8e-11
Identities = 28/132 (21%), Positives = 39/132 (29%), Gaps = 35/132 (26%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLA-------------PIHLAA 749
Y G + LH A+ + V+ L+ GA ++ + P+ LAA
Sbjct: 88 YQGHSALHIAIEK---RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Query: 750 DLGHLDVLDTLLRLG---AKVNLVDVLGQTALH----------------RTARDDKTQAV 790
DV+ LL A + D LG T LH D Q
Sbjct: 145 CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG 204
Query: 791 RVLLSHNADTSI 802
L I
Sbjct: 205 ARLCPTVQLEEI 216
Score = 61.3 bits (149), Expect = 3e-10
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWN 57
G + L + + GL PL A G ++ R +L+ + + + +
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
Score = 57.1 bits (138), Expect = 8e-09
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVS 1125
H + + + + L G + L N G TPL L
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL--------- 227
Query: 1126 DLLRGNSALLDAAKKGNLGRVQKLL 1150
AAK+G + + +L
Sbjct: 228 -----------AAKEGKIEIFRHIL 241
Score = 54.8 bits (132), Expect = 4e-08
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
+++ TPL AA +GK +I R +LQ + +
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251
Score = 54.0 bits (130), Expect = 9e-08
Identities = 28/167 (16%), Positives = 40/167 (23%), Gaps = 46/167 (27%)
Query: 4 KDVVEYLLASGA----SIHARDDGGLHPLHNA---CSFGHADVVRLLLEA---------- 46
++EYL + S + G L A G + LL+
Sbjct: 19 TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78
Query: 47 -DANPNTRDNWNFTPLHEAAAKGKTDV--------------CIGIYFAEHSSKSNQYVYG 91
+A + LH A K G +F +H +
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF--- 135
Query: 92 IGGGT-----GCPMHKDRSCYL----AHGADPFLKNQEGQTPLDLTV 129
G C D YL A + G T L V
Sbjct: 136 --GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Score = 44.8 bits (106), Expect = 8e-05
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 24/112 (21%)
Query: 1079 TPLHEAAAKGKADIVRLLLQH--------GADPSKKNRDGATPL----DLVREGDQDVSD 1126
L ++G + + LL++ + G T L +++G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHL 1178
LL K K L QG + LH+A EKR L
Sbjct: 64 P------LLQIDKDSG---NPKPLVNAQCTDEFYQGHS--ALHIAI-EKRSL 103
Score = 35.5 bits (82), Expect = 0.067
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 11/52 (21%)
Query: 1130 GNSALLDAAKKGNLGRVQKLL---------TADNINCRDAQGRNSTPLHLAA 1172
L +G + LL D+ + G+ T L A
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK--TCLMKAV 51
Score = 35.5 bits (82), Expect = 0.067
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 27 PLHNACSFGHADVVRLLLE--------ADANPNTRDNWNFTPLHEAAAKGK 69
L + S G + + LLE + T + T L +A +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ 55
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 122 bits (308), Expect = 6e-32
Identities = 31/214 (14%), Positives = 50/214 (23%), Gaps = 51/214 (23%)
Query: 403 LLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVH 462
+ A+ G L L R + +L+ GAD+
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI- 68
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+ K G T Q G ++ L + E KG D
Sbjct: 69 ---KSRTKEGTTLFFPLFQGGGNDITGTTEL--------CKIFLE--KGAD--------- 106
Query: 523 PQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEM-------LVKHGANVNVADL 575
+ A + + + EM + G + + D
Sbjct: 107 ---ITALYKPYK--IVVFKNI---------FNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152
Query: 576 WKFTPLHEAA-------AKALLQHGADINLKNTD 602
W T L K + + NLK
Sbjct: 153 WGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 110 bits (276), Expect = 1e-27
Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 60/195 (30%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPS 496
+ AA L G + + + L + R ++S L ++
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFL-IN-- 63
Query: 497 AANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
KG D + +R G T G
Sbjct: 64 -------------KGAD------------IKSRTKEGT--TLFFPLF---------QGGG 87
Query: 557 ------YEVTEMLVKHGANVNVADLWKFTPLHEAAAKA--------------LLQHGADI 596
E+ ++ ++ GA++ + + Q G +
Sbjct: 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147
Query: 597 NLKNTDGKTALDLAV 611
+K+ G TAL+
Sbjct: 148 LIKDKWGLTALEFVK 162
Score = 97.4 bits (243), Expect = 3e-23
Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 20/129 (15%)
Query: 496 SAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYG 555
S A R + A G +L + + + + L N
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK---SNILYDV----LRNNNDEA 53
Query: 556 HYEVTEMLVKHGANVNVADLWKFTPLHEAA-------------AKALLQHGADINLKNTD 602
Y+++ L+ GA++ T K L+ GADI
Sbjct: 54 RYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113
Query: 603 GKTALDLAV 611
K + +
Sbjct: 114 YKIVVFKNI 122
Score = 91.7 bits (228), Expect = 3e-21
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 35/151 (23%)
Query: 2 GRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADV------VRLLLEADANPNTRDN 55
R + +L+ GA I +R G G D+ ++ LE A+
Sbjct: 53 ARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112
Query: 56 WNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAH-GADP 114
+ + D I + + G
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYK-------------------------LIFSQSGLQL 147
Query: 115 FLKNQEGQTPLDLTVA---EDVRSLLQDAMA 142
+K++ G T L+ +++D +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 82.0 bits (203), Expect = 6e-18
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 22/121 (18%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADI------VRLLLQHGADPSKKNRDGATPL-DL 1116
+ GA++ T G DI ++ L+ GAD + + +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 1117 VREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKR 1176
+ D ++++ + + G + +D G T L ++
Sbjct: 122 IFNYFVDENEMIPLYKLIFS--QSG----------LQ-LLIKDKWGL--TALEFVKRCQK 166
Query: 1177 H 1177
Sbjct: 167 P 167
Score = 80.9 bits (200), Expect = 2e-17
Identities = 26/214 (12%), Positives = 49/214 (22%), Gaps = 58/214 (27%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-----------AKALLQHGAD 595
+ A G YE L + G + K L++ + L+ GAD
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 596 INLKNTDGKTALDLAV-PCTRAVLSGDHKKEELLEA-ARMMGGGLHRYTWPLGTTDIGWC 653
I + +G T + + LE A DI
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA-----------------DIT-- 108
Query: 654 SCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV--------VNFKHPYTG 705
+ + + + + + K + G
Sbjct: 109 -------------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-G 154
Query: 706 DTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNK 739
T L ++ ++ + N K
Sbjct: 155 LTALEFVKRC---QKPIALKMMEDYIKKYNLKEN 185
Score = 76.6 bits (189), Expect = 5e-16
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYP---KRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGH 753
+ + G T + + + KGA + K +
Sbjct: 68 IKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126
Query: 754 LDVLDT-------LLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+D + + G ++ + D G TAL R K A++++ +
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179
Score = 74.3 bits (183), Expect = 3e-15
Identities = 31/235 (13%), Positives = 58/235 (24%), Gaps = 60/235 (25%)
Query: 241 NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEF 300
NAM ++ + AA E L +G + S
Sbjct: 2 NAMS--EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI------------------ 41
Query: 301 KGHCLLEACRQGDPSRVKKFLTS---DVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVA 357
+ +L ++ FL + D+ + G T L IT
Sbjct: 42 -LYDVLRNNNDEARYKISMFLINKGADI-KSRTKE-GTTLF-----FPLFQGGGNDITGT 93
Query: 358 EEMQATVREH------RDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGD 411
E+ E + N E + +L+ + G
Sbjct: 94 TELCKIFLEKGADITALYKP---YKIVVFKNIFNYFVDENEMIPLY----KLIFSQSGLQ 146
Query: 412 MTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN 466
+ +D G T L F + ++ + + + K+N
Sbjct: 147 --------------LLIKDKWGL--TALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 68.2 bits (167), Expect = 5e-13
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSR------LEVCSL 265
+ L N ++++ LI GA++ + T E+C +
Sbjct: 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI 99
Query: 266 LLSEGADP 273
L +GAD
Sbjct: 100 FLEKGADI 107
Score = 66.6 bits (163), Expect = 1e-12
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVR-------LLLQHGADPSKKNRDGATPLDL 1116
++ GA++ + + D + Q G K++ G T L+
Sbjct: 101 LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Query: 1117 -VREGDQDVSDLL 1128
R ++
Sbjct: 161 VKRCQKPIALKMM 173
Score = 65.9 bits (161), Expect = 2e-12
Identities = 14/120 (11%), Positives = 29/120 (24%), Gaps = 27/120 (22%)
Query: 1077 KFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLV-----REGDQDVSDLL--- 1128
++ + AA G + L + G + K++ + L V E +S L
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 1129 ---------RGNSALLDAAKKGNLGRVQKLLTAD-------NINCRDAQGRNSTPLHLAA 1172
G + + G +I + +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK--IVVFKNI 122
Score = 64.3 bits (157), Expect = 8e-12
Identities = 7/84 (8%), Positives = 25/84 (29%), Gaps = 13/84 (15%)
Query: 217 PLHNACSYGH------FEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLE-------VC 263
G E+ ++ ++ GA++ A+ + + ++
Sbjct: 78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137
Query: 264 SLLLSEGADPTLHNCHSKSAIDVA 287
+ G + + +A++
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFV 161
Score = 64.3 bits (157), Expect = 8e-12
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 12/102 (11%)
Query: 707 TPLHCAVTSPYPKRKAIVESLIRKGA---HLNEKNKELLAPIHLAADLGHLDVLDTLLRL 763
+ A L KG K+ L + D + L+
Sbjct: 8 RTVSAAAML---GTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 764 GAKVNLVDVLGQTALHRTAR------DDKTQAVRVLLSHNAD 799
GA + G T + T+ ++ L AD
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD 106
Score = 64.3 bits (157), Expect = 1e-11
Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 7/67 (10%)
Query: 214 GLVPLHNACSYGHFEVTEM-------LIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
+ + + EM ++G + D W T L + ++
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Query: 267 LSEGADP 273
Sbjct: 174 EDYIKKY 180
Score = 62.8 bits (153), Expect = 3e-11
Identities = 21/217 (9%), Positives = 47/217 (21%), Gaps = 60/217 (27%)
Query: 577 KFTPLHEAAA-------KALLQHGADINLKN---TDGKTALDLAVPCTRAVLSGDHKKEE 626
++ + AA L + G + L R +S
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS-----MF 60
Query: 627 LLEA-ARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDP 685
L+ A DI + + + + G
Sbjct: 61 LINKGA-----------------DI---------------KSRTKEGTTLFFPLFQGGGN 88
Query: 686 SRVKKFLTSDV-------VNFKHPYTGDTPLHCAVTS---PYPKRKAIVESLI-RKGAHL 734
+ + + + + + + + + + + G L
Sbjct: 89 DITGTTELCKIFLEKGADITALY-KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVD 771
K+K L + L + K NL +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 60.1 bits (146), Expect = 3e-10
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANV---NAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
+ A G +E L + G + L ++R ++ L+++GAD
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 274 T---------LHNCHSKSAIDVAPTRELQQRL 296
D+ T EL +
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100
Score = 59.7 bits (145), Expect = 4e-10
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRD 1109
+ G + + D W T L K ++++ + + K
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 55.8 bits (135), Expect = 8e-09
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 2 GRKDVVEYLLAS-GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+ + + + G + +D GL L ++++ + N ++N
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 45.8 bits (109), Expect = 2e-05
Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 34/102 (33%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNT---RDNWNFTPLHEAAAKGKTDVCIGIYFAEHSS 83
+ A G + L E + N + L + + +
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS---------- 58
Query: 84 KSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPL 125
+ GAD + +EG T
Sbjct: 59 ---------------------MFLINKGADIKSRTKEGTTLF 79
Score = 43.5 bits (103), Expect = 1e-04
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMD 244
GL L +M+ N +
Sbjct: 154 GLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 32.0 bits (73), Expect = 0.84
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 1125 SDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNS--TPLHLAAGEKR 1176
S+ + + AA G +L + N L E R
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEAR 54
Score = 30.4 bits (69), Expect = 2.3
Identities = 0/22 (0%), Positives = 8/22 (36%)
Query: 1 YGRKDVVEYLLASGASIHARDD 22
+ ++ + + +++
Sbjct: 164 CQKPIALKMMEDYIKKYNLKEN 185
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 117 bits (296), Expect = 8e-31
Identities = 49/163 (30%), Positives = 66/163 (40%), Gaps = 50/163 (30%)
Query: 437 TPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPS 496
L AA + V L+A+GADV NA D++G TPL+ A G ++ +L L
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV----NAKDEYGLTPLYLATAHGHLEIVEVL-LK-- 68
Query: 497 AANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGH 556
G D VNA D G TPLH AA GH
Sbjct: 69 -------------NGAD------------VNAVDAIGF--TPLHLAA---------FIGH 92
Query: 557 YEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQH 592
E+ E+L+KHGA+VN D + T + A+ L +
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 110 bits (279), Expect = 2e-28
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 57/167 (34%)
Query: 452 EYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKG 511
+ HG+D+ L EAA+ G+ +L ++ G
Sbjct: 5 HHHHHHGSDLG-----------KKLLEAARAGQDDEVRIL-MA---------------NG 37
Query: 512 GDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVN 571
D VNA+D G TPL+ A ++GH E+ E+L+K+GA+VN
Sbjct: 38 AD------------VNAKDEYGL--TPLYLAT---------AHGHLEIVEVLLKNGADVN 74
Query: 572 VADLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAV 611
D FTPLH AA A+ LL+HGAD+N ++ GKTA D+++
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 92.4 bits (231), Expect = 4e-22
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 31/125 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G+ D V L+A+GA ++A+D+ GL PL+ A + GH ++V +LL+ A+ N D FTP
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G ++ AE L HGAD +++
Sbjct: 84 LHLAAFIGHLEI------AE-------------------------VLLKHGADVNAQDKF 112
Query: 121 GQTPL 125
G+T
Sbjct: 113 GKTAF 117
Score = 87.1 bits (217), Expect = 3e-20
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+ H L A + + V L+ GA +N K++ L P++LA GHL++
Sbjct: 6 HHHHHGSDLGKKLLEAARA---GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 757 LDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ LL+ GA VN VD +G T LH A + VLL H AD
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 86.3 bits (215), Expect = 6e-20
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPL+ A IVE L++ GA +N + P+HLAA +GHL++ + LL+ G
Sbjct: 47 GLTPLYLATAH---GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
A VN D G+TA + + +L N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 85.1 bits (212), Expect = 1e-19
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+G ++VE LL +GA ++A D G PLH A GH ++ +LL+ A+ N +D + T
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 61 LHEAAAKGKTDV 72
+ G D+
Sbjct: 117 FDISIGNGNEDL 128
Score = 84.0 bits (209), Expect = 4e-19
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 23/125 (18%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREG 1120
H+ HG+++ L EAA G+ D VR+L+ +GAD + K+ G TPL L G
Sbjct: 6 HHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 1121 DQDVSDLL------------RGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTP 1167
++ ++L G + L AA G+L + LL ++N +D G+ T
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK--TA 116
Query: 1168 LHLAA 1172
++
Sbjct: 117 FDISI 121
Score = 80.9 bits (201), Expect = 4e-18
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
GL PL+ A ++GH E+ E+L+K GA+VNA+D FTPLH AA LE+ +LL GAD
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 76.3 bits (189), Expect = 2e-16
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
VN D G TPLH AA + + E LL HGADV NA DK+G T + G
Sbjct: 73 VNAVDAIGF--TPLHLAAFIGHLEIAEVLLKHGADV----NAQDKFGKTAFDISIGNGNE 126
Query: 486 QLSALL 491
L+ +L
Sbjct: 127 DLAEIL 132
Score = 75.5 bits (187), Expect = 3e-16
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+K+GA+VN D FTPLH AA G +I +LL+HGAD + +++ G T D+ + G++
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 1123 DVSDLL 1128
D++++L
Sbjct: 127 DLAEIL 132
Score = 75.1 bits (186), Expect = 5e-16
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
L A G + +L+ GA+VNA D + TPL+ A + LE+ +LL GAD
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Score = 68.2 bits (168), Expect = 1e-13
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLS 268
PLH A GH E+ E+L+K GA+VNA D + T + ++ +L
Sbjct: 83 PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 62.8 bits (154), Expect = 1e-11
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 40/119 (33%)
Query: 8 EYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
+ G+ + L A G D VR+L+ A+ N +D + TPL+ A A
Sbjct: 5 HHHHHHGSDLGK-------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 68 GKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
G ++ E L +GAD + G TPL
Sbjct: 58 GHLEI------VE--------------------------VLLKNGADVNAVDAIGFTPL 84
Score = 55.5 bits (135), Expect = 3e-09
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEAD 47
G ++ E LL GA ++A+D G + G+ D+ +L + +
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 48.9 bits (118), Expect = 7e-07
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQH 1099
+KHGA+VN D + T + G D+ +L +
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 42.0 bits (100), Expect = 1e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 231 EMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G+++ L EAA + + +L++ GAD
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGAD 39
Score = 41.6 bits (99), Expect = 2e-04
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 27/83 (32%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G+T L +A + ++ LL G D VN +D G+
Sbjct: 80 GFTPLHLAAFIGHL------EIAEV---LL--KHGAD--------------VNAQDKFGK 114
Query: 435 HSTPLHFAAGYNRVAVVEYLLAH 457
T + G + E L
Sbjct: 115 --TAFDISIGNGNEDLAEILQKL 135
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 115 bits (290), Expect = 3e-30
Identities = 34/156 (21%), Positives = 48/156 (30%), Gaps = 45/156 (28%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+A + V+ +A G DV N T + G PLH AA G+ ++ L
Sbjct: 6 MCD--KEFMWALKNGDLDEVKDYVAKGEDV----NRTLEGGRKPLHYAADCGQLEILEFL 59
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L KG D +NA D TPL A
Sbjct: 60 -LL---------------KGAD------------INAPDKHHI--TPLLSAV-------- 81
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAK 587
GH ++L+ GA+ V T +
Sbjct: 82 -YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Score = 114 bits (287), Expect = 8e-30
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G D V+ +A G ++ +GG PLH A G +++ LL A+ N D + TP
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
L A +G + + L+ GAD +K +
Sbjct: 77 LLSAVYEGHVSCV-------------KLL------------------LSKGADKTVKGPD 105
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G T + T + +++LLQ
Sbjct: 106 GLTAFEATDNQAIKALLQ 123
Score = 108 bits (272), Expect = 7e-28
Identities = 37/151 (24%), Positives = 47/151 (31%), Gaps = 46/151 (30%)
Query: 467 ATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTV 526
A + G ++ KG D V
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDY-VA---------------KGED------------V 33
Query: 527 NARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA- 585
N GR PLH+AA G E+ E L+ GA++N D TPL A
Sbjct: 34 NRTLEGGR--KPLHYAA---------DCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82
Query: 586 ------AKALLQHGADINLKNTDGKTALDLA 610
K LL GAD +K DG TA +
Sbjct: 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 90.5 bits (226), Expect = 1e-21
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G PLH A G E+ E L+ GA++NA D TPL A + + LLLS+GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 274 TLHNCHSKSAIDVA 287
T+ +A +
Sbjct: 100 TVKGPDGLTAFEAT 113
Score = 87.8 bits (219), Expect = 1e-20
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 23/112 (20%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
V G +VN PLH AA G+ +I+ LL GAD + ++ TP
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP---------- 76
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGE 1174
LL A +G++ V+ LL+ + + G T +
Sbjct: 77 ----------LLSAVYEGHVSCVKLLLSKGADKTVKGPDGL--TAFEATDNQ 116
Score = 87.5 bits (218), Expect = 1e-20
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
D A+ + V+ + KG +N + P+H AAD G L++L+ LL G
Sbjct: 7 CDKEFMWALKN---GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A +N D T L + V++LLS AD
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 86.7 bits (216), Expect = 3e-20
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLK 599
A G + + V G +VN PLH AA + LL GADIN
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 600 NTDGKTALDLAV 611
+ T L AV
Sbjct: 70 DKHHITPLLSAV 81
Score = 76.3 bits (189), Expect = 1e-16
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
A G + + + G +VN PLH AA +LE+ LL +GAD
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Score = 72.0 bits (178), Expect = 4e-15
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 676 LLEACRQGDPSRVKKFLTSDV-VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHL 734
+ A + GD VK ++ VN G PLH A + I+E L+ KGA +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADC---GQLEILEFLLLKGADI 66
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDD 785
N +K + P+ A GH+ + LL GA + G TA T
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 62.8 bits (154), Expect = 6e-12
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEV 262
PL +A GH ++L+ GA+ T +++ +
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 51.2 bits (124), Expect = 8e-08
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVL 757
TPL AV Y + V+ L+ KGA K + L + +L
Sbjct: 73 HITPLLSAV---YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 40.8 bits (97), Expect = 3e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
+ + A K G+L V+ + ++N GR PLH AA
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAA 48
Score = 40.1 bits (95), Expect = 6e-04
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVR 1094
+ GA+ V T + +++
Sbjct: 93 LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 35.5 bits (83), Expect = 0.022
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 249 TPLHEAASKSRLEVCSLLLSEGADP 273
A L+ +++G D
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDV 33
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold,
transfer ribosylation; HET: SO4; 1.75A {Homo sapiens}
PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A*
3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A*
3uh2_A* 3uh4_A* 4dvi_A*
Length = 240
Score = 117 bits (294), Expect = 1e-29
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 6/125 (4%)
Query: 852 YRHKLLKGIEKLCSSP------SFSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQ 905
+ H G++ + + S GT+LIDL DDKEF +V EEMQ+TVREHRD G
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMLNTSGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGH 62
Query: 906 SGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGF 965
+GGIF+RYNI++IQKV N+KLWERY HRR EV++EN A+ERMLFHGSPF+NAI+ KGF
Sbjct: 63 AGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGF 122
Query: 966 DERHA 970
DERHA
Sbjct: 123 DERHA 127
Score = 68.6 bits (167), Expect = 8e-13
Identities = 44/76 (57%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1157 CRDAQGRNSTPLHLAAGEK---RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSS 1213
G P+H R LL CRVTLGKSFLQF+A+KMAH+PPGHHSV GRPS
Sbjct: 150 VYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSV 209
Query: 1214 GGLYFPEYVVYRGEQV 1229
GL EYV+YRGEQ
Sbjct: 210 NGLALAEYVIYRGEQA 225
Score = 41.7 bits (97), Expect = 7e-04
Identities = 32/36 (88%), Positives = 35/36 (97%)
Query: 75 GIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAH 110
GIYFAE+SSKSNQYVYGIGGGTGCP+HKDRSCY+ H
Sbjct: 136 GIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICH 171
Score = 39.0 bits (90), Expect = 0.006
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 331 PYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGG 375
+T GT+LIDL DDKEF +V EEMQ+TVREHRD G +GG
Sbjct: 21 QSMLNTSGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGG 65
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 112 bits (284), Expect = 1e-29
Identities = 50/151 (33%), Positives = 61/151 (40%), Gaps = 45/151 (29%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
DG TPLH AA V+ LL+ GADV NA K G TPLH AA+ G ++ LL
Sbjct: 8 DGN--TPLHNAAKNGHAEEVKKLLSKGADV----NARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L+ KG D VNAR G TP H A
Sbjct: 62 -LA---------------KGAD------------VNARSKDGN--TPEHLAK-------- 83
Query: 552 CSYGHYEVTEMLVKHGANVNVADLWKFTPLH 582
GH+E+ ++L GA+VN H
Sbjct: 84 -KNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 103 bits (261), Expect = 2e-26
Identities = 47/157 (29%), Positives = 57/157 (36%), Gaps = 52/157 (33%)
Query: 458 GADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKV 517
G SKD G TPLH AA+ G + L LS KG D
Sbjct: 1 GHMWGSKD------GNTPLHNAAKNGHAEEVKKL-LS---------------KGAD---- 34
Query: 518 KKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK 577
VNAR G TPLH AA GH E+ ++L+ GA+VN
Sbjct: 35 --------VNARSKDGN--TPLHLAA---------KNGHAEIVKLLLAKGADVNARSKDG 75
Query: 578 FTPLHEAA-------AKALLQHGADINLKNTDGKTAL 607
TP H A K L GAD+N ++
Sbjct: 76 NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 93.6 bits (234), Expect = 8e-23
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 33/126 (26%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G + V+ LL+ GA ++AR G PLH A GHA++V+LLL A+ N R TP
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQ 119
H A G ++ + L A GAD ++
Sbjct: 79 EHLAKKNGHHEI------VK--------------------------LLDAKGADVNARSW 106
Query: 120 EGQTPL 125
Sbjct: 107 GSSHHH 112
Score = 90.9 bits (227), Expect = 7e-22
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G PLHNA GH E + L+ GA+VN TPLH AA K LL GAD+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 597 NLKNTDGKTALDLA 610
N ++ DG T LA
Sbjct: 69 NARSKDGNTPEHLA 82
Score = 84.0 bits (209), Expect = 2e-19
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G+TPLH A + V+ L+ KGA +N ++K+ P+HLAA GH +++ LL G
Sbjct: 9 GNTPLHNAAKN---GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
A VN G T H ++ + V++L + AD
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 82.4 bits (205), Expect = 6e-19
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ GA+VN TPLH AA G A+IV+LLL GAD + +++DG TP L
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL------- 81
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLH 1169
A K G+ V+ L ++N R H
Sbjct: 82 -------------AKKNGHHEIVKLLDAKGADVNARSWGSS--HHHH 113
Score = 80.1 bits (199), Expect = 4e-18
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G ++V+ LLA GA ++AR G P H A GH ++V+LL A+ N R +
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
Query: 61 LH 62
H
Sbjct: 112 HH 113
Score = 79.7 bits (198), Expect = 6e-18
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLHNA GH E + L+ GA+VNA TPLH AA E+ LLL++GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Score = 77.4 bits (192), Expect = 4e-17
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
PLH A GH E+ ++L+ GA+VNA TP H A E+ LL ++GAD
Sbjct: 45 PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 74.7 bits (185), Expect = 3e-16
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
G TPLH AA G A+ V+ LL GAD + +++DG TPL L
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL---------- 48
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
AAK G+ V+ LL ++N R G TP HLA
Sbjct: 49 ----------AAKNGHAEIVKLLLAKGADVNARSKDGN--TPEHLAK 83
Score = 70.9 bits (175), Expect = 8e-15
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
VN + G+TPLH A + IV+ L+ KGA +N ++K+ P HLA GH ++
Sbjct: 35 VNARSKD-GNTPLHLAAKN---GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90
Query: 757 LDTLLRLGAKVNLVDVLGQTALH 779
+ L GA VN H
Sbjct: 91 VKLLDAKGADVNARSWGSSHHHH 113
Score = 70.5 bits (174), Expect = 1e-14
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 35/113 (30%)
Query: 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVC 73
G ++D G PLHNA GHA+ V+ LL A+ N R TPLH AA G ++
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI- 57
Query: 74 IGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
+ L A GAD ++++G TP
Sbjct: 58 -----VK--------------------------LLLAKGADVNARSKDGNTPE 79
Score = 55.5 bits (135), Expect = 2e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLH 252
G P H A GH E+ ++L GA+VNA H
Sbjct: 75 GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 117 bits (295), Expect = 3e-29
Identities = 43/261 (16%), Positives = 70/261 (26%), Gaps = 71/261 (27%)
Query: 375 GYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGR 434
G T L A N + + L LL+ + + ++ + D +
Sbjct: 54 GKTCLLKAMLNLHNGQND---TIAL---LLD--VARKTDSLKQFVN-----ASYTDSYYK 100
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN----------ATDKWGFTPLHEAAQKGR 484
T LH A + +V L+ +GADV + N +G PL AA +
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 485 TQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAA- 543
+ L ++ P ++ARD+ G T LH
Sbjct: 161 LAIVKFL-------------------------LQNSWQPADISARDSVGN--TVLHALVE 193
Query: 544 ------GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALL 590
+ + L + + TPL AA +L
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Query: 591 QHGADINLKNTDGKTALDLAV 611
Q A
Sbjct: 254 QREI-------HEPECRHAAA 267
Score = 116 bits (291), Expect = 1e-28
Identities = 63/353 (17%), Positives = 102/353 (28%), Gaps = 128/353 (36%)
Query: 437 TPLHFAAGYNRVAVVEYLL-------AHGADVHSKDNATDKWGFTPLHEA---AQKGRTQ 486
+ A + +E LL D KD + G T L +A G+
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDP---ETGKTCLLKAMLNLHNGQND 71
Query: 487 LSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLV 546
ALL L +K+ VN + D+ + T LH A
Sbjct: 72 TIALL-LD---------------VARKTDSLKQFVN---ASYTDSYYKGQTALHIAI--- 109
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVAD--------------LWKFTPLHEAA------- 585
+ + +LV++GA+V A + PL AA
Sbjct: 110 ------ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163
Query: 586 AKALLQHG---ADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYT 642
K LLQ+ ADI+ +++ G T L V D+ + M
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHA------LVEVADNTVDNTKFVTSMYNE------ 211
Query: 643 WPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHP 702
+L + P+ + ++ N K
Sbjct: 212 ---------------------------------ILILGAKLHPTLKLE----EITNRK-- 232
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLD 755
G TPL A +S + ++ ++++ H E H AA H
Sbjct: 233 --GLTPLALAASS---GKIGVLAYILQREIHEPE-------CRHAAAHHHHHH 273
Score = 107 bits (269), Expect = 7e-26
Identities = 64/367 (17%), Positives = 104/367 (28%), Gaps = 114/367 (31%)
Query: 236 AGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQR 295
A L+ + +A ++S + LL P L +
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLL-----PFLQRSKKRLTD----------- 45
Query: 296 LSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLID---------- 345
FK P TG T L +L
Sbjct: 46 ------------------------------SEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75
Query: 346 LLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLE 405
LL ++ ++ + + A+ + GQ TAL +A E ++V L L+
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYKGQ----TALHIAIERRNM------TLVTL---LV- 121
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHG---ADVH 462
G D+ G PL AA N++A+V++LL + AD+
Sbjct: 122 -ENGADVQAAANGDFFKKTKGRPGFYFGE--LPLSLAACTNQLAIVKFLLQNSWQPADI- 177
Query: 463 SKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVN 522
+A D G T LH + N F ++ + ++
Sbjct: 178 ---SARDSVGNTVLHALVEVAD--------------NTVDNTKFVTSMYNEILILGAKLH 220
Query: 523 PQT--VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTP 580
P + G TPL AA S G V +++ +
Sbjct: 221 PTLKLEEITNRKGL--TPLALAA---------SSGKIGVLAYILQREIHEP-------EC 262
Query: 581 LHEAAAK 587
H AA
Sbjct: 263 RHAAAHH 269
Score = 95.6 bits (238), Expect = 9e-22
Identities = 56/299 (18%), Positives = 92/299 (30%), Gaps = 77/299 (25%)
Query: 298 NEFKGHCLLEACRQGDPSRVKKFLTSDV--------VNFKHPYTGDTPLPGTLLID---- 345
+ + +A Q + ++ L FK P TG T L +L
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 346 ------LLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDL 399
LL ++ ++ + + A+ + GQ TAL +A E ++V L
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ----TALHIAIERRNM------TLVTL 119
Query: 400 ESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHG- 458
L+ G D+ G PL AA N++A+V++LL +
Sbjct: 120 ---LV--ENGADVQAAANGDFFKKTKGRPGFYFGE--LPLSLAACTNQLAIVKFLLQNSW 172
Query: 459 --ADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTK 516
AD+ +A D G T LH + N F ++
Sbjct: 173 QPADI----SARDSVGNTVLHALVEVAD--------------NTVDNTKFVTSMYNEILI 214
Query: 517 VKKLVNPQT--VNARDTAGRKSTPLHFAA-----------------GLVPLHNACSYGH 556
+ ++P + G TPL AA H A + H
Sbjct: 215 LGAKLHPTLKLEEITNRKGL--TPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271
Score = 91.0 bits (226), Expect = 4e-20
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 81/286 (28%)
Query: 212 ALGLVPLHNA---CSYGHFEVTEMLIKAGANVNAMDLWQ-----------FTPLHEAASK 257
G L A G + +L+ +++ + T LH A +
Sbjct: 52 ETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER 111
Query: 258 SRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRV 317
+ + +LL+ GAD + ++ + R F L A
Sbjct: 112 RNMTLVTLLVENGADV---QAAANGDF----FKKTKGRPGFYFGELPLSLAACTNQL--- 161
Query: 318 KKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYT 377
+V L+ A + RD+ G T
Sbjct: 162 ------AIVK--------------FLLQ-----------NSWQPADISA-RDSV---GNT 186
Query: 378 ALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHST 437
L E + + V + +++L L + + G T
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGA---------KLHPTLKLEEITNRKGL--T 235
Query: 438 PLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKG 483
PL AA ++ V+ Y+L H AA
Sbjct: 236 PLALAASSGKIGVLAYILQREIH-----------EPECRHAAAHHH 270
Score = 85.2 bits (211), Expect = 4e-18
Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 32/142 (22%)
Query: 1 YGRKDVVEYLLASGASIHARDDG--------------GLHPLHNACSFGHADVVRLLLE- 45
+V L+ +GA + A +G G PL A +V+ LL+
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170
Query: 46 --ADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKD 103
A+ + RD+ T LH V + ++ +
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL----------- 219
Query: 104 RSCYLAHGADPFLKNQEGQTPL 125
+ N++G TPL
Sbjct: 220 ----HPTLKLEEITNRKGLTPL 237
Score = 84.1 bits (208), Expect = 8e-18
Identities = 46/345 (13%), Positives = 76/345 (22%), Gaps = 108/345 (31%)
Query: 465 DNATDKWGFTPLHEAAQKGRTQ-LSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNP 523
+ + + +A + Q L +LLP K+L +
Sbjct: 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFL-------------------QRSKKRLTD- 45
Query: 524 QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVA---------- 573
+D K T L A G + +L+ +
Sbjct: 46 --SEFKDPETGK-TCLLKAM------LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96
Query: 574 -DLWKFTPLHEAA-------AKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKE 625
T LH A L+++GAD+ T+ +
Sbjct: 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF------KKTKGRPGFYFGEL 150
Query: 626 ELLEAARMMGGGLHRYTWPLGTTDI-------GWCSCCCKMELMFMPRIKDEFKGHCLLE 678
L AA I W +D L
Sbjct: 151 PLSLAACT------------NQLAIVKFLLQNSWQPA--------DISARDSVGNTVLHA 190
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
D + + + N + L N
Sbjct: 191 LVEVADNTVDNTKFVTSMYNEIL--------------------ILGAKLHPTLKLEEITN 230
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTAR 783
++ L P+ LAA G + VL +L+ H A
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAH 268
Score = 81.8 bits (202), Expect = 5e-17
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 1064 VKHGANVNVAD--------------LWKFTPLHEAAAKGKADIVRLLLQHG---ADPSKK 1106
V++GA+V A + PL AA + IV+ LLQ+ AD S +
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 1107 NRDGATPLDL-VREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLL-TADNINCRDAQGRN 1164
+ G T L V D V N+ + + L KL T + +G
Sbjct: 181 DSVGNTVLHALVEVADNTV-----DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL- 234
Query: 1165 STPLHLAAGE 1174
TPL LAA
Sbjct: 235 -TPLALAASS 243
Score = 79.1 bits (195), Expect = 4e-16
Identities = 46/285 (16%), Positives = 82/285 (28%), Gaps = 79/285 (27%)
Query: 566 HGANVNVADLWKFTPLHEAAAK-------ALLQ-------HGADINLKNTD-GKTALDLA 610
A L+ + +A A+ +LL D K+ + GKT L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 611 VPCTRAVLSGDHKK--EELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIK 668
+ LL+ AR + +
Sbjct: 62 MLNLHN----GQNDTIALLLDVARKTD---------------------SLKQFVNASYTD 96
Query: 669 DEFKGH-CLLEACRQGDPSRVKKFL--------------TSDVVNFKHPYTGDTPLHCAV 713
+KG L A + + + V + Y G+ PL A
Sbjct: 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156
Query: 714 TSPYPKRKAIVESLIRKG---AHLNEKNKELLAPIHLAADLGHLDVLDT---------LL 761
+ AIV+ L++ A ++ ++ +H ++ V +T +L
Sbjct: 157 ---CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213
Query: 762 RLGAKVN-------LVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
LGAK++ + + G T L A K + +L
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Score = 75.6 bits (186), Expect = 6e-15
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 1067 GANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSD 1126
A+ + T LH A + +V LL+++GAD R G
Sbjct: 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY---- 146
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLL----TADNINCRDAQGRNSTPLHLAA 1172
G L AA L V+ LL +I+ RD+ G T LH
Sbjct: 147 --FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN--TVLHALV 192
Score = 67.5 bits (165), Expect = 3e-12
Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 42/178 (23%)
Query: 703 YTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLA--------------PIHLA 748
Y G T LH A+ + +V L+ GA + P+ LA
Sbjct: 99 YKGQTALHIAIER---RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155
Query: 749 ADLGHLDVLDTLLRLG---AKVNLVDVLGQTALHRTARDDKTQAVRVLLS-------HNA 798
A L ++ LL+ A ++ D +G T LH
Sbjct: 156 ACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL 215
Query: 799 DTSIVSLLVIFSCSTNLGL---------------KHLLELFEREQITLDILAEMNHED 841
+ L + + GL ++L+ E A +H
Sbjct: 216 GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHHH 273
Score = 66.7 bits (163), Expect = 5e-12
Identities = 25/156 (16%), Positives = 40/156 (25%), Gaps = 53/156 (33%)
Query: 1 YGRKDVVEYLLASGASIHA-----------RDDGGLHPLHNACSFGHADVVRLLLEADAN 49
G+ D + LL + G LH A + +V LL+E A+
Sbjct: 67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126
Query: 50 PNTRDNWNF--------------TPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGG 95
N +F PL AA + + +++
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-------------KFLLQNS-- 171
Query: 96 TGCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAE 131
AD ++ G T L V
Sbjct: 172 -------------WQPADISARDSVGNTVLHALVEV 194
Score = 62.1 bits (151), Expect = 2e-10
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 19/91 (20%)
Query: 1 YGRKDVVEYLLASG---ASIHARDDGGLHPLHNACSFGHADVVR---------------- 41
+ +V++LL + A I ARD G LH V
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217
Query: 42 LLLEADANPNTRDNWNFTPLHEAAAKGKTDV 72
L + TPL AA+ GK V
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGV 248
Score = 61.0 bits (148), Expect = 4e-10
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQ-------HGADPSKKNRD-GATPL--- 1114
A L+ + +A A+ + LL D K+ + G T L
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 1115 -DLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAG 1173
+ G D LL + D+ K+ + +G+ T LH+A
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQ---------FVNASYTDSYYKGQ--TALHIAI- 109
Query: 1174 EKRHL 1178
E+R++
Sbjct: 110 ERRNM 114
Score = 57.5 bits (139), Expect = 7e-09
Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 44/126 (34%)
Query: 1063 NVKHGANVNVADLWKFTPLHEAAAKGKADIVR---------LLLQHGAD-------PSKK 1106
N A+++ D T LH + +L GA
Sbjct: 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229
Query: 1107 NRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNST 1166
NR G TPL L AA G +G + +L R+
Sbjct: 230 NRKGLTPLAL--------------------AASSGKIGVLAYILQ------REIHEP--E 261
Query: 1167 PLHLAA 1172
H AA
Sbjct: 262 CRHAAA 267
Score = 55.9 bits (135), Expect = 2e-08
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEA 64
+ L + + GL PL A S G V+ +L+ + + H A
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-------ECRHAA 266
Query: 65 AAKG 68
A
Sbjct: 267 AHHH 270
Score = 49.0 bits (117), Expect = 4e-06
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 8/60 (13%)
Query: 1065 KHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQD 1123
+ + TPL AA+ GK ++ +LQ
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273
Score = 42.8 bits (101), Expect = 4e-04
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 11/88 (12%)
Query: 731 GAHLNEKNKELLAPIHLAADLGHLDVLDTLLRL-------GAKVNLVDV-LGQTALHR-- 780
A I A + L++LL D G+T L +
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 781 -TARDDKTQAVRVLLSHNADTSIVSLLV 807
+ + + +LL T + V
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFV 90
Score = 41.7 bits (98), Expect = 9e-04
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 27/121 (22%)
Query: 14 GASIHARDDGGLHPLHNACSFGHADVVRLLLEA-------DANPNTRDNWN-FTPLHEAA 65
A + +A + + + LL + +D T L +A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 66 AKGKT-DVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTP 124
+ + K++ + A +GQT
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFV------------------NASYTDSYYKGQTA 104
Query: 125 L 125
L
Sbjct: 105 L 105
Score = 34.8 bits (80), Expect = 0.14
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 7/38 (18%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHAD 38
G+ V+ Y+L H A H
Sbjct: 243 SGKIGVLAYILQREIH-------EPECRHAAAHHHHHH 273
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 116 bits (292), Expect = 5e-29
Identities = 51/331 (15%), Positives = 88/331 (26%), Gaps = 109/331 (32%)
Query: 437 TPLHFAAGYNRVA----VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLP 492
L ++ +LL H + ++ G T L +A
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLS-------- 58
Query: 493 LSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNAC 552
+ ND + L + +++ +N RD R T LH A
Sbjct: 59 ---AGRNDTIPILLDI--AEKTGNMREFIN---SPFRDVYYRGQTALHIAI--------- 101
Query: 553 SYGHYEVTEMLVKHGANVNVAD--------------LWKFTPLHEAA-------AKALLQ 591
E+LV+ GA+V+ + PL AA L +
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161
Query: 592 HG---ADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTT 648
+G AD+ +++ G T L V + E + M
Sbjct: 162 NGHKQADLRRQDSRGNTVLHALV-------AIADNTRENTKFVTKM-------------- 200
Query: 649 DIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTP 708
LL C + P ++N G +P
Sbjct: 201 ------------------------YDLLLIKCAKLFP----DTNLEALLNND----GLSP 228
Query: 709 LHCAVTSPYPKRKAIVESLIRKGAHLNEKNK 739
L A + + I + +IR+ +
Sbjct: 229 LMMAAKT---GKIGIFQHIIRREIADAAAHH 256
Score = 114 bits (287), Expect = 2e-28
Identities = 42/266 (15%), Positives = 73/266 (27%), Gaps = 64/266 (24%)
Query: 362 ATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSS 421
+ + S G T L A N D LL+ ++
Sbjct: 33 KRLTDEEFREPSTGKTCLPKALLNLSAG------RNDTIPILLDIAEKTGNMREF----- 81
Query: 422 CPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN----------ATDKW 471
RD+ R T LH A VE L+ GADVH++ +
Sbjct: 82 --INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF 139
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
G PL AA + + L K + + +D+
Sbjct: 140 GELPLSLAACTNQPHIVHYL----------------------TENGHKQAD---LRRQDS 174
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK-------FTPLHEA 584
G T LH + + ++ ++L+ A + + +PL A
Sbjct: 175 RGN--TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232
Query: 585 A-------AKALLQHGADINLKNTDG 603
A + +++ +
Sbjct: 233 AKTGKIGIFQHIIRREIADAAAHHHH 258
Score = 92.1 bits (229), Expect = 1e-20
Identities = 62/291 (21%), Positives = 91/291 (31%), Gaps = 65/291 (22%)
Query: 305 LLEACRQGDPSRVK---KFLTS-----DVVNFKHPYTGDTPLPGTLLID----------L 346
L + +G P ++ FL + F+ P TG T LP LL L
Sbjct: 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68
Query: 347 LSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEA 406
L ++ + E + + R+ GQ TAL +A E K V+L L+
Sbjct: 69 LDIAEKTGNMREFINSPFRDVYYRGQ----TALHIAIERRCK------HYVEL---LV-- 113
Query: 407 SKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHG---ADVHS 463
KG D+ R P G PL AA N+ +V YL +G AD+
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGE--LPLSLAACTNQPHIVHYLTENGHKQADL-- 169
Query: 464 KDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNP 523
D G T LH ++ L K L L
Sbjct: 170 --RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL-----LLI--KCAKLFPDTNLEA- 219
Query: 524 QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVAD 574
+ G +PL AA G + + +++ A
Sbjct: 220 ----LLNNDGL--SPLMMAA---------KTGKIGIFQHIIRREIADAAAH 255
Score = 76.7 bits (189), Expect = 2e-15
Identities = 46/276 (16%), Positives = 71/276 (25%), Gaps = 74/276 (26%)
Query: 537 TPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWK----FTPLHEAA------- 585
L G + L+ H + + + T L +A
Sbjct: 7 PILFDIV-----SRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61
Query: 586 ---AKALLQHGAD-----------INLKNTDGKTALDLAVPCTRAVLSGDHKK--EELLE 629
LL G+TAL +A+ K E L+E
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI-------ERRCKHYVELLVE 114
Query: 630 AARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVK 689
G +H G F F L A P V
Sbjct: 115 K----GADVH-------AQARGRFFQPKDEGGYF------YFGELPLSLAACTNQPHIVH 157
Query: 690 KFLTSDVVNFKHP----YTGDTPLHCAVTSPYPKR------KAIVESLIRKGAHLNEK-- 737
+LT + G+T LH V R + + L+ K A L
Sbjct: 158 -YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Query: 738 -----NKELLAPIHLAADLGHLDVLDTLLRLGAKVN 768
N + L+P+ +AA G + + ++R
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 76.0 bits (187), Expect = 4e-15
Identities = 40/270 (14%), Positives = 73/270 (27%), Gaps = 75/270 (27%)
Query: 579 TPLHEAAAKA-----------LLQHGADINLKNT----DGKTALDLAVPCTRAVLSGDHK 623
L + ++ LL H + + GKT L A+ A G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA---GRND 63
Query: 624 KEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGH-CLLEACRQ 682
+L G + E + P ++G L A +
Sbjct: 64 TIPILLDIAEKTGNMR--------------------EFINSPFRDVYYRGQTALHIAIER 103
Query: 683 GDP--------------SRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLI 728
++ + + Y G+ PL A + + IV L
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT---NQPHIVHYLT 160
Query: 729 RKG---AHLNEKNKELLAPIHLAADLGH---------LDVLDTLLRLGAKVN-------L 769
G A L ++ +H + + D LL AK+ L
Sbjct: 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220
Query: 770 VDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
++ G + L A+ K + ++
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 76.0 bits (187), Expect = 4e-15
Identities = 43/279 (15%), Positives = 76/279 (27%), Gaps = 80/279 (28%)
Query: 209 QAVALGLVPLHNA---CSYGHFEVTEMLIKAG-----------ANVNAMDLWQFTPLHEA 254
+ + G L A S G + +L+ + + T LH A
Sbjct: 41 REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA 100
Query: 255 ASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDP 314
+ LL+ +GAD + + F L A P
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRF-------FQPKDEGGYFYFGELPLSLAACTNQP 153
Query: 315 SRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSG 374
V L + QA +R +D+
Sbjct: 154 HIVH-----------------------YLTE-----------NGHKQADLRR-QDS---R 175
Query: 375 GYTALQVA---GENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDL 431
G T L +N+++ + + DL LL K L ++ +
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDL---LLI--KCAK-------LFPDTNLEALLNN 223
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDK 470
DG +PL AA ++ + ++++ D A
Sbjct: 224 DGL--SPLMMAAKTGKIGIFQHIIRREI----ADAAAHH 256
Score = 74.8 bits (184), Expect = 1e-14
Identities = 37/296 (12%), Positives = 70/296 (23%), Gaps = 86/296 (29%)
Query: 218 LHNACSYGHFEVTEMLIKAGANVNAMDLWQ----FTPLHEAA---SKSRLEVCSLLLSEG 270
+ G + L+ + + + T L +A S R + +LL
Sbjct: 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72
Query: 271 ADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGH-CLLEACRQGDPSRVKKFLTSDVVNFK 329
S ++G L A + V+
Sbjct: 73 EKTGNMREFINSPFR-----------DVYYRGQTALHIAIERRCKHYVE----------- 110
Query: 330 HPYTGDTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKL 389
LL++ +D + + + G L +A
Sbjct: 111 ------------LLVEKGAD----VHAQARGRFFQPKDEGGYFYFGELPLSLAACT---- 150
Query: 390 LQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHI--VNCRDLDGRHSTPLHFAAGYN- 446
+V L + + +D G T LH
Sbjct: 151 --------------------NQPHIVHYLTENGHKQADLRRQDSRGN--TVLHALVAIAD 188
Query: 447 --------RVAVVEYLLAHGADVHSKDNA---TDKWGFTPLHEAAQKGRTQLSALL 491
+ + LL A + N + G +PL AA+ G+ + +
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 72.1 bits (177), Expect = 7e-14
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 1068 ANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDL 1127
+ T LH A + V LL++ GAD + R
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF---- 139
Query: 1128 LRGNSALLDAAKKGNLGRVQKLL----TADNINCRDAQGRNSTPLHLAA 1172
G L AA V L ++ +D++G T LH
Sbjct: 140 --GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN--TVLHALV 184
Score = 68.3 bits (167), Expect = 2e-12
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 30/132 (22%)
Query: 1064 VKHGANVNVAD--------------LWKFTPLHEAAAKGKADIVRLLLQHG---ADPSKK 1106
V+ GA+V+ + PL AA + IV L ++G AD ++
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172
Query: 1107 NRDGATPL-DLVREGD--QDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNI-NCRDAQG 1162
+ G T L LV D ++ + + LL L + KL N+ + G
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLL-------LIKCAKLFPDTNLEALLNNDG 225
Query: 1163 RNSTPLHLAAGE 1174
+PL +AA
Sbjct: 226 L--SPLMMAAKT 235
Score = 63.6 bits (155), Expect = 4e-11
Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 46/173 (26%)
Query: 1 YGRKDVVEYLLASG-----------ASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
GR D + LL + G LH A V LL+E A+
Sbjct: 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118
Query: 50 PNTRDNWNF--------------TPLHEAAAKGKTDVCI-----GIYFAEHSSKSNQ--- 87
+ + F PL AA + + G A+ + ++
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT 178
Query: 88 ---YVYGIGGGTGCPMHKDRSCY---LAHGAD-------PFLKNQEGQTPLDL 127
+ I T Y L A L N +G +PL +
Sbjct: 179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Score = 59.8 bits (145), Expect = 9e-10
Identities = 30/172 (17%), Positives = 47/172 (27%), Gaps = 49/172 (28%)
Query: 2 GRKDVVEYLLASGASIHARD----DGGLHPLHNA---CSFGHADVVRLLLEA-------- 46
G + ++ +LL + + G L A S G D + +LL+
Sbjct: 20 GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79
Query: 47 ---DANPNTRDNWNFTPLHEAAAKGKTDV--------------CIGIYFAEHSSKSNQYV 89
++ T LH A + G +F Y
Sbjct: 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY- 138
Query: 90 YGIGGGTGCPMH-------KDRSCYL-AHG---ADPFLKNQEGQTPLDLTVA 130
G P+ YL +G AD ++ G T L VA
Sbjct: 139 ---FGEL--PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185
Score = 59.0 bits (143), Expect = 2e-09
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 1 YGRKDVVEYLLASG---ASIHARDDGGLHPLHNACSFGH---------ADVVRLLLEADA 48
+ +V YL +G A + +D G LH + + LLL A
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209
Query: 49 NPNT-------RDNWNFTPLHEAAAKGKTDV 72
+N +PL AA GK +
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240
Score = 57.9 bits (140), Expect = 4e-09
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 29/129 (22%)
Query: 1064 VKHGANVNVADLWK----FTPLHEAA---AKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ H + + + T L +A + G+ D + +LL +
Sbjct: 29 LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR-------EF 81
Query: 1117 VREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNS---------- 1165
+ +DV RG +AL A ++ V+ L+ +++ +
Sbjct: 82 INSPFRDVYY--RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF 139
Query: 1166 --TPLHLAA 1172
PL LAA
Sbjct: 140 GELPLSLAA 148
Score = 51.3 bits (123), Expect = 7e-07
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 24/112 (21%)
Query: 1079 TPLHEAAAKGKA----DIVRLLLQHGAD----PSKKNRDGATPL----DLVREGDQDVSD 1126
L + ++G ++ LL H ++ G T L + G D
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 1127 LLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHL 1178
+ LLD A+K + N RD R T LH+A E+R
Sbjct: 67 I------LLDIAEKTG-----NMREFINSPFRDVYYRGQTALHIAI-ERRCK 106
Score = 45.5 bits (108), Expect = 4e-05
Identities = 23/117 (19%), Positives = 32/117 (27%), Gaps = 38/117 (32%)
Query: 1063 NVKHGANVNVADLWKFTPLHEAAA---------KGKADIVRLLLQHGADPSKK------- 1106
N A++ D T LH A K + LLL A
Sbjct: 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL 221
Query: 1107 NRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLT--ADNINCRDAQ 1161
N DG +PL + AAK G +G Q ++ +
Sbjct: 222 NNDGLSPLMM--------------------AAKTGKIGIFQHIIRREIADAAAHHHH 258
Score = 43.6 bits (103), Expect = 2e-04
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 4 KDVVEYLLASGASIHA-------RDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
+ + LL A + ++ GL PL A G + + ++ + +
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 42.1 bits (99), Expect = 7e-04
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDV----LGQTALHRTA---RDDKTQAVR 791
L + + G +L LL ++ + G+T L + + +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 792 VLLSHNADTSIVSLLVI 808
+LL T + +
Sbjct: 67 ILLDIAEKTGNMREFIN 83
Score = 37.1 bits (86), Expect = 0.026
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 25 LHPLHNACSFGHADVVRLLLEADANPNTRDNWN----FTPLHEAA---AKGKTDVC 73
+ G ++ LL + T L +A + G+ D
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 103 bits (259), Expect = 4e-24
Identities = 36/213 (16%), Positives = 67/213 (31%), Gaps = 46/213 (21%)
Query: 413 TVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWG 472
V ++ ++ D G TPLH+ + +V++L+ HG++ DN G
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGN--TPLHWLTSIANLELVKHLVKHGSNRLYGDNM----G 164
Query: 473 FTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTA 532
+ L +A + N+ FEA + L + D+
Sbjct: 165 ESCLVKAVKSV---------------NNYDSGTFEAL-------LDYLYP--CLILEDSM 200
Query: 533 GRKSTPLHFAA---GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKA- 588
R T LH G+ A Y + +VK + +
Sbjct: 201 NR--TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258
Query: 589 ----------LLQHGADINLKNTDGKTALDLAV 611
+N ++++G T L++A
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291
Score = 99.3 bits (247), Expect = 2e-22
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 40/219 (18%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA----------AKALLQH-GAD 595
PLH S + E+ + LVKHG+N D + L +A +ALL +
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193
Query: 596 INLKNTDGKTALDLAVPCTRA---VLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGW 652
+ L+++ +T L + + + + + L+ + +
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253
Query: 653 CSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCA 712
+ K ++ +K +++N + GDT L+ A
Sbjct: 254 KNGERKDSILENLDLKWIIA----------------------NMLNAQDSN-GDTCLNIA 290
Query: 713 VTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADL 751
+IV++L+ GA NK L P+ A L
Sbjct: 291 ARL---GNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 94.3 bits (234), Expect = 8e-21
Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 55/253 (21%)
Query: 549 HNACSYGHYEVTEMLVKHGANVNVA-DLWKFTPLHEAA-------AKALLQHGADINLKN 600
H + EV + N+N+ D TPLH K L++HG++ +
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
Query: 601 TDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKME 660
G++ L AV SG E LL+ +
Sbjct: 162 NMGESCLVKAVKSVNNYDSG--TFEALLD---------------YLYPCL---------- 194
Query: 661 LMFMPRIKDEFKG----HCLLEACRQGDPSRVKKFLTSDVVNF----------KHPYTGD 706
++D H ++ S K+ ++ + +
Sbjct: 195 -----ILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 707 TPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAK 766
+ + ++ LN ++ +++AA LG++ ++D LL GA
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
Query: 767 VNLVDVLGQTALH 779
+ + G +
Sbjct: 309 PFIANKSGLRPVD 321
Score = 90.9 bits (225), Expect = 1e-19
Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 52/301 (17%)
Query: 188 SLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHF-EVTEMLIKAGANVNA-MDL 245
L P P +L + EV + N+N +D
Sbjct: 70 LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE 129
Query: 246 WQFTPLHEAASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCL 305
TPLH S + LE+ L+ G++ + +S + A +
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV-----------KSVNNY 178
Query: 306 LEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLPGTLLIDLLSDDKEFI-----TVAEEM 360
G + +L + + T L ++ ++ + +
Sbjct: 179 ----DSGTFEALLDYLYPC-LILEDSM-NRTILHHIIITSGMTGCSAAAKYYLDILMGWI 232
Query: 361 QATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLS 420
+G + + K + E + + + +L
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML---------------- 276
Query: 421 SCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAA 480
N +D +G T L+ AA +++V+ LL +GAD +K G P+ A
Sbjct: 277 ------NAQDSNGD--TCLNIAARLGNISIVDALLDYGADP----FIANKSGLRPVDFGA 324
Query: 481 Q 481
Sbjct: 325 G 325
Score = 77.4 bits (190), Expect = 3e-15
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 28/121 (23%)
Query: 1058 TLTPHNVKHGANVNVA-DLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL 1116
+ N+N+ D TPLH + ++V+ L++HG++ + G + L
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170
Query: 1117 VREGDQDVSDLLRGNSALLDAAKKGN---LGRVQKLLT--ADNINCRDAQGRNSTPLHLA 1171
A K N G + LL + D+ R T LH
Sbjct: 171 --------------------AVKSVNNYDSGTFEALLDYLYPCLILEDSMNR--TILHHI 208
Query: 1172 A 1172
Sbjct: 209 I 209
Score = 74.7 bits (183), Expect = 2e-14
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 22/147 (14%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHA----DVVRLLLEADANPNTRDNW 56
++V++L+ G++ D+ G L A + LL D+
Sbjct: 141 IANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200
Query: 57 NFTPLHEAAA----KGKTDVCIGI------YFAEHSSKSNQYVYGIGGGTGCPMHKDRSC 106
N T LH G + + + ++ Q + +R
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260
Query: 107 YLAHGADPFL--------KNQEGQTPL 125
+ D ++ G T L
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCL 287
Score = 68.1 bits (166), Expect = 3e-12
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 1062 HNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGD 1121
+N D T L+ AA G IV LL +GADP N+ G P+D +
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327
Score = 67.4 bits (164), Expect = 6e-12
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 19/161 (11%)
Query: 697 VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDV 756
+N G+TPLH + +V+ L++ G++ + + + A +
Sbjct: 123 LNIPVDEHGNTPLHWLTSI---ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179
Query: 757 LDT----LLRLGAKVNLVDVLGQTALH----RTARDDKTQAVR--------VLLSHNADT 800
T L L + L D + +T LH + + A + ++
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239
Query: 801 SIVSLLVIFSCSTNLGLKHLLELFEREQITLDILAEMNHED 841
S + + + E + I +N +D
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280
Score = 66.2 bits (161), Expect = 1e-11
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 4 KDVVEYLLASGASI-HARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLH 62
++V + + ++ D+ G PLH S + ++V+ L++ +N DN + L
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV 169
Query: 63 EAAAKG 68
+A
Sbjct: 170 KAVKSV 175
Score = 62.4 bits (151), Expect = 3e-10
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 705 GDTPLHCAVTSPYPKRKA---------IVESLIRKGAHLNEKNKELLAPIHLAADLGH-- 753
T LH + + + ++ +++K + +
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260
Query: 754 --LDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
L+ LD + +N D G T L+ AR V LL + AD I
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311
Score = 62.4 bits (151), Expect = 3e-10
Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 671 FKGHCLLEACRQGDPSRVKKFLTSDV--VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLI 728
K L+ + + L +D N + + H + S + + ++
Sbjct: 61 MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL---QEVNDAFP 117
Query: 729 RKGAHLNEK-NKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDD-- 785
+LN ++ P+H + +L+++ L++ G+ D +G++ L + +
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177
Query: 786 -KTQAVRVLLSHNADT 800
+ LL +
Sbjct: 178 YDSGTFEALLDYLYPC 193
Score = 60.4 bits (146), Expect = 1e-09
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 4 KDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHE 63
+ ++ ++A+D G L+ A G+ +V LL+ A+P + P+
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
Query: 64 AA 65
A
Sbjct: 323 GA 324
Score = 56.6 bits (136), Expect = 2e-08
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 32/138 (23%)
Query: 1066 HGANVNVADLWKFTPLHEAAA----KGKADIVR--------LLLQHGADPSKKNRDGATP 1113
+ + D T LH G + + +++ P + +
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249
Query: 1114 L--DLVREGDQDVSDLLR---------------GNSALLDAAKKGNLGRVQKLLTAD-NI 1155
D E + + L G++ L AA+ GN+ V LL +
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309
Query: 1156 NCRDAQGRNSTPLHLAAG 1173
+ G P+ AG
Sbjct: 310 FIANKSGL--RPVDFGAG 325
Score = 55.4 bits (133), Expect = 4e-08
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 35/136 (25%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLE----ADANPNTRDNW 56
Y ++ +++ N + D + L+ N +D+
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282
Query: 57 NFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFL 116
T L+ AA G + L +GADPF+
Sbjct: 283 GDTCLNIAARLGNISIV-------------------------------DALLDYGADPFI 311
Query: 117 KNQEGQTPLDLTVAED 132
N+ G P+D +
Sbjct: 312 ANKSGLRPVDFGAGLE 327
Score = 47.7 bits (113), Expect = 1e-05
Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 33/125 (26%)
Query: 3 RKDVVEYLLASGASIHARDDGGLHPLHN-ACSFGHADVVRLLLEADANPNT-RDNWNFTP 60
+++ L ++ ++ + + +V N N D TP
Sbjct: 75 IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 134
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH + ++ + HG++ +
Sbjct: 135 LHWLTSIANLELV-------------------------------KHLVKHGSNRLYGDNM 163
Query: 121 GQTPL 125
G++ L
Sbjct: 164 GESCL 168
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 95.9 bits (240), Expect = 7e-24
Identities = 52/137 (37%), Positives = 63/137 (45%), Gaps = 45/137 (32%)
Query: 432 DGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+GR TPLH AA + VV+ LL GADV NA DK G TPLH AA+ G ++ LL
Sbjct: 1 NGR--TPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 492 PLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNA 551
L G D VNA+D GR TPLH AA
Sbjct: 55 -LE---------------AGAD------------VNAKDKNGR--TPLHLAA-------- 76
Query: 552 CSYGHYEVTEMLVKHGA 568
GH EV ++L++ GA
Sbjct: 77 -RNGHLEVVKLLLEAGA 92
Score = 92.0 bits (230), Expect = 1e-22
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A+ N +D TP
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 61 LHEAAAKGKTDV 72
LH AA G +V
Sbjct: 72 LHLAARNGHLEV 83
Score = 90.1 bits (225), Expect = 7e-22
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 544 GLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADI 596
G PLH A GH EV ++L++ GA+VN D TPLH AA K LL+ GAD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 597 NLKNTDGKTALDLA 610
N K+ +G+T L LA
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 82.4 bits (205), Expect = 4e-19
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
G TPLH A + +V+ L+ GA +N K+K P+HLAA GHL+V+ LL G
Sbjct: 2 GRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNA 798
A VN D G+T LH AR+ + V++LL A
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 80.5 bits (200), Expect = 2e-18
Identities = 32/59 (54%), Positives = 37/59 (62%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
G PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 79.3 bits (197), Expect = 4e-18
Identities = 46/130 (35%), Positives = 56/130 (43%), Gaps = 46/130 (35%)
Query: 472 GFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDT 531
G TPLH AA+ G ++ LL L G D VNA+D
Sbjct: 2 GRTPLHLAARNGHLEVVKLL-LE---------------AGAD------------VNAKDK 33
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA------ 585
GR TPLH AA GH EV ++L++ GA+VN D TPLH AA
Sbjct: 34 NGR--TPLHLAA---------RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 586 -AKALLQHGA 594
K LL+ GA
Sbjct: 83 VVKLLLEAGA 92
Score = 77.0 bits (191), Expect = 3e-17
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
PLH A GH EV ++L++AGA+VNA D TPLH AA LEV LLL GA
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 73.2 bits (181), Expect = 7e-16
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 24/102 (23%)
Query: 1078 FTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDA 1137
TPLH AA G ++V+LLL+ GAD + K+++G TPL L A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL--------------------A 42
Query: 1138 AKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHL 1178
A+ G+L V+ LL A ++N +D GR TPLHLAA HL
Sbjct: 43 ARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA-RNGHL 81
Score = 72.8 bits (180), Expect = 8e-16
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPL 1114
++ GA+VN D TPLH AA G ++V+LLL+ GAD + K+++G TPL
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Score = 66.6 bits (164), Expect = 1e-13
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 33/100 (33%)
Query: 27 PLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSN 86
PLH A GH +VV+LLLEA A+ N +D TPLH AA G +V +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV------VK------ 52
Query: 87 QYVYGIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L GAD K++ G+TPL
Sbjct: 53 --------------------LLLEAGADVNAKDKNGRTPL 72
Score = 61.6 bits (151), Expect = 8e-12
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADA 48
G +VV+ LL +GA ++A+D G PLH A GH +VV+LLLEA A
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.8 bits (136), Expect = 9e-10
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 744 PIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
P+HLAA GHL+V+ LL GA VN D G+T LH AR+ + V++LL AD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 55.8 bits (136), Expect = 1e-09
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
++ GA+VN D TPLH AA G ++V+LLL+ GA
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 36.6 bits (86), Expect = 0.005
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 1130 GNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
G + L AA+ G+L V+ LL A ++N +D GR TPLHLAA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAA 43
Score = 32.3 bits (75), Expect = 0.16
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAH 733
G TPLH A + + +V+ L+ GA+
Sbjct: 68 GRTPLHLAARNGH---LEVVKLLLEAGAY 93
Score = 29.6 bits (68), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 774 GQTALHRTARDDKTQAVRVLLSHNAD 799
G+T LH AR+ + V++LL AD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD 27
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 101 bits (253), Expect = 5e-23
Identities = 52/410 (12%), Positives = 97/410 (23%), Gaps = 94/410 (22%)
Query: 358 EEMQATVREHRDNGQSGGYTALQVAGENS--KKLLQEPPSV-VDLESQLLEASKGGDMTV 414
E + + ++ Q L A N K+L + + E A+ G +
Sbjct: 48 EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 107
Query: 415 --VTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWG 472
LL + IV + AA + V+ L +
Sbjct: 108 LDTLCLLLTSDEIVKVIQAENY--QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--N 163
Query: 473 FTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLV-NPQTVNARDT 531
+ AA+ G + + +L T
Sbjct: 164 YHAFRLAAENGHLHV-----------------------------LNRLCELAPTEATAMI 194
Query: 532 AGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQ 591
+AA GH+ V L+ + A++ +F + + +
Sbjct: 195 QAENYYAFRWAA--------VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246
Query: 592 HGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRYTWPLGTTDIG 651
H + + A L+ + G D+
Sbjct: 247 HVNRLK----EMHDAFKLS-----------NPD---------------------GVFDLV 270
Query: 652 WCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHC 711
S C + M I+ + L+ R K L L
Sbjct: 271 TKSECLQGFYMLRNLIRRNDEVL--LDDIRFLLSIPGIKALAPTATIPGDANE---LLRL 325
Query: 712 AVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLL 761
A+ + L+ + L ++ G LD+ L
Sbjct: 326 ALRL---GNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVAL 369
Score = 99.6 bits (248), Expect = 2e-22
Identities = 48/370 (12%), Positives = 91/370 (24%), Gaps = 66/370 (17%)
Query: 450 VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQ-KGRTQLSALLPLSPSAANDPLRELFEA 508
+ L ++ L+ A + QL + +
Sbjct: 49 AIHIFLPGTKNMEQVR------QLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT 102
Query: 509 CKGGDLTKVKKLVNP-QTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHG 567
L + L+ + V A GH V L +
Sbjct: 103 GCSSALDTLCLLLTSDEIVKVIQAENY--QAFRLA---------AENGHLHVLNRLCELA 151
Query: 568 ANVNVADLWK--FTPLHEAA-------AKALLQHGADINLKNTDGK--TALDLAVPCTRA 616
+A + + AA L + + A A A
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA-----A 206
Query: 617 VLSGDHKK--EELLEA-ARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKG 673
V G H LL+ + +H + + G + + R+K+
Sbjct: 207 VGRG-HHNVINFLLDCPVMLAYAEIHEFEY--GEKYV------NPFIARHVNRLKE---- 253
Query: 674 HCLLEACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLI----- 728
+ +A + +P V D+V G L + + L+
Sbjct: 254 --MHDAFKLSNPDGVF-----DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306
Query: 729 RKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQ 788
+ A + + LA LG+ LL + + + L + +
Sbjct: 307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLD 363
Query: 789 AVRVLLSHNA 798
V L H+
Sbjct: 364 LRAVALEHHH 373
Score = 97.7 bits (243), Expect = 1e-21
Identities = 35/284 (12%), Positives = 59/284 (20%), Gaps = 55/284 (19%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQ--FTPLHEAASKSRLEVCSLLLSEGADPT 274
A GH V L + + + AA L V + L
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190
Query: 275 LHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYTG 334
++ + A V FL V +
Sbjct: 191 TAMIQAE-------------------NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 231
Query: 335 DTPLPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPP 394
+ G ++ N + A +++ + L
Sbjct: 232 EFE-YGEKYVNPF-----------------IARHVNRLKEMHDAFKLSNPDGVFDLVTKS 273
Query: 395 SVVDLESQLLEASKGGDMTV--VTRLLSSCPHI-----VNCRDLDGRHSTPLHFAAGYNR 447
+ L + D + R L S P I D L A
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN--ELLRLALRLGN 331
Query: 448 VAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
LL+ + + + GR L A+
Sbjct: 332 QGACALLLSIPSVLALTKA-------NNYYINETGGRLDLRAVA 368
Score = 84.2 bits (208), Expect = 3e-17
Identities = 34/291 (11%), Positives = 58/291 (19%), Gaps = 47/291 (16%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+ L + + + D + LLL +D N+ AA
Sbjct: 77 NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136
Query: 66 AKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCY----------LAHGADPF 115
G V E + + +
Sbjct: 137 ENGHLHVL--NRLCELAPTEIMAMIQAENYH--AFRL--AAENGHLHVLNRLCELAPTEA 190
Query: 116 LKN--QEGQTPLDLTVAE----DVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGD 169
E +V + L D A + +
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250
Query: 170 NVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEV 229
+ + S G + V + G L N +
Sbjct: 251 LKEMHDAFKLSNPDG--------------VFDLV---TKSECLQGFYMLRNLIRRNDEVL 293
Query: 230 TEML--------IKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
+ + IKA A + L A C+LLLS +
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344
Score = 82.7 bits (204), Expect = 1e-16
Identities = 35/277 (12%), Positives = 68/277 (24%), Gaps = 47/277 (16%)
Query: 1 YGRKDVVEYLLASGASIHARD--DGGLHPLHNACSFGHADVVRLLLEADANPN--TRDNW 56
G V+ L + H A GH V+ L E
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197
Query: 57 NFTPLHEAAA-KGKTDVCIGIYFAEHSSKSN-QYVYGIGGGTGCPMHKDRSCYLAHGADP 114
N+ AA +G +V + + ++ G K + ++A +
Sbjct: 198 NYYAFRWAAVGRGHHNVI--NFLLDCPVMLAYAEIHEFEYG-----EKYVNPFIARHVNR 250
Query: 115 FLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLP 174
+E L+ + V L+ + L
Sbjct: 251 ---LKEMHDAFKLSNPDGVFDLVTKSECLQ------GFYM------------------LR 283
Query: 175 PPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLI 234
+ + S P AL P+ L A G+ +L+
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKAL----APTATIPGDANELLRLALRLGNQGACALLL 339
Query: 235 KAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
+ + + + RL++ ++ L
Sbjct: 340 SIPSVLALTKA---NNYYINETGGRLDLRAVALEHHH 373
Score = 79.6 bits (196), Expect = 1e-15
Identities = 35/266 (13%), Positives = 75/266 (28%), Gaps = 54/266 (20%)
Query: 369 DNGQSGGYTALQVAGENS-----KKLLQEPPSVV--DLESQ----LLEASKGGDMTVVTR 417
Q+ Y A ++A EN +L + P+ + ++++ A++ G + V+ R
Sbjct: 122 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 181
Query: 418 LLSSCPHIVNCRDLDGRHSTPLHFAAGYN-RVAVVEYLLAHGADVHSKDNATDKWGF--- 473
L P + + +AA V+ +LL + + ++G
Sbjct: 182 LCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240
Query: 474 ---------------TPLHEAAQKGRTQLSALLPLSPSAAND---PLRELFEACKGGDLT 515
+ G L ++ S LR L L
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDL-----VTKSECLQGFYMLRNLIRRNDEVLLD 295
Query: 516 KVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVADL 575
++ L++ + A L A G+ +L+ + + +
Sbjct: 296 DIRFLLSIPGIKALAPTATIPG-----DANELLRLALRLGNQGACALLLSIPSVLALTKA 350
Query: 576 WKFTPLHEAA-------AKALLQHGA 594
+ L+H
Sbjct: 351 ---NNYYINETGGRLDLRAVALEHHH 373
Score = 75.0 bits (184), Expect = 4e-14
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 5 DVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD--NWNFTPLH 62
D + LL S + A GH V+ L E N+
Sbjct: 109 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168
Query: 63 EAAAKGKTDVC 73
AA G V
Sbjct: 169 LAAENGHLHVL 179
Score = 74.2 bits (182), Expect = 5e-14
Identities = 20/145 (13%), Positives = 34/145 (23%), Gaps = 20/145 (13%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
+ V V + AA G ++ L +
Sbjct: 115 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA------------- 161
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
A AA+ G+L + +L Q N AA + H +
Sbjct: 162 -----ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216
Query: 1183 VTLGKSFLQFNAIKMAHAPPGHHSV 1207
L + ++ G V
Sbjct: 217 FLLDCP-VMLAYAEIHEFEYGEKYV 240
Score = 68.0 bits (166), Expect = 6e-12
Identities = 32/255 (12%), Positives = 58/255 (22%), Gaps = 53/255 (20%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDL--WQFTPLHEAASKS-RLEVCSLLLSEGADP 273
A GH V L + + + AA V + LL
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225
Query: 274 TLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHPYT 333
H + + + ++ + H +A + +P V D+V
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMH---DAFKLSNPDGVF-----DLVTKSECLQ 277
Query: 334 GDTPLP------GTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSK 387
G L +L+D + + L++
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP---TATIPG---DANELLRL------ 325
Query: 388 KLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNR 447
A + G+ LLS L + + R
Sbjct: 326 ------------------ALRLGNQGACALLLS------IPSVLALTKANNYYINETGGR 361
Query: 448 VAVVEYLLAHGADVH 462
+ + L H H
Sbjct: 362 LDLRAVALEHHHHHH 376
Score = 59.6 bits (144), Expect = 3e-09
Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 4/123 (3%)
Query: 679 ACRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN 738
+R K L SD + A + + L+ +
Sbjct: 68 CLYYAHYNRNAKQLWSDAHKKG--IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 125
Query: 739 KELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVL--GQTALHRTARDDKTQAVRVLLSH 796
E LAA+ GHL VL+ L L + + A A + + L
Sbjct: 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 185
Query: 797 NAD 799
Sbjct: 186 APT 188
Score = 52.6 bits (126), Expect = 4e-07
Identities = 22/143 (15%), Positives = 33/143 (23%), Gaps = 25/143 (17%)
Query: 675 CLLEACRQGDPSRVK--KFLTSD--VVNFKHPYTGDTPLHCAVTSPYPKRKA------IV 724
A G S + L + +V A A ++
Sbjct: 95 ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLA---------AENGHLHVL 144
Query: 725 ESLIRKGAHLNEKNKEL--LAPIHLAADLGHLDVLDTLLRLGAKVNLVDV--LGQTALHR 780
L + LAA+ GHL VL+ L L + A
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204
Query: 781 TA-RDDKTQAVRVLLSHNADTSI 802
A + LL +
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLAY 227
Score = 49.2 bits (117), Expect = 5e-06
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 1063 NVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDG 1110
+K A L A G LLL + + +
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352
Score = 43.0 bits (101), Expect = 5e-04
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
G + LL+ + + + + + G D+ + LE +
Sbjct: 329 LGNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374
Score = 41.9 bits (98), Expect = 0.001
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 735 NEKNKELLAPIHLAADLGHLDVLDTL--------LRLGAKVNLVDVLGQTALHRTARDDK 786
+ + + +LD + ++ A + L R
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Query: 787 TQAVRVLLSHNADTSI 802
A +LLS + ++
Sbjct: 332 QGACALLLSIPSVLAL 347
Score = 39.5 bits (92), Expect = 0.006
Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 52/152 (34%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN---------------- 1107
+ + A++ G+ + + +H + +
Sbjct: 219 LDCPVMLAYAEIH-------EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271
Query: 1108 ----RDGATPL-DLVREGDQDVSDLLR--------------------GNSALLDAAKKGN 1142
G L +L+R D+ + D +R N L A + GN
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Query: 1143 LGRVQKLLTADNINCRDAQGRNSTPLHLAAGE 1174
G LL+ ++ ++
Sbjct: 332 QGACALLLSIPSVLALTKA----NNYYINETG 359
Score = 31.1 bits (70), Expect = 2.7
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGA 1101
+ + + + + G+ D+ + L+H
Sbjct: 339 LSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHH 373
Score = 29.9 bits (67), Expect = 5.7
Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
K + + ++ E+ ++LL + + + + G K ++
Sbjct: 47 KEAIHIFLPGTKNM-EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC----FVAAI 101
Query: 781 TARDDKTQAVRVLLSHNADTSIVS 804
T + +LL+ + ++
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQ 125
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 87.6 bits (218), Expect = 9e-21
Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 46/146 (31%)
Query: 442 AAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDP 501
+ ++ L+ G+ + S L EAA+ G+ +L ++
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG-------KKLLEAARAGQDDEVRIL-MA------- 45
Query: 502 LRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTE 561
G D V A+D G TPLH AA GH EV +
Sbjct: 46 --------NGAD------------VAAKDKNGS--TPLHLAA---------RNGHLEVVK 74
Query: 562 MLVKHGANVNVADLWKFTPLHEAAAK 587
+L++ GA+V D + T +
Sbjct: 75 LLLEAGADVXAQDKFGKTAFDISIDN 100
Score = 86.1 bits (214), Expect = 3e-20
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 34/138 (24%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP 60
+ L+ G+ + + L A G D VR+L+ A+ +D TP
Sbjct: 4 HHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP 60
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQE 120
LH AA G +V + + L GAD +++
Sbjct: 61 LHLAARNGHLEVV-------------KLL------------------LEAGADVXAQDKF 89
Query: 121 GQTPLDLTVAEDVRSLLQ 138
G+T D+++ L +
Sbjct: 90 GKTAFDISIDNGNEDLAE 107
Score = 84.2 bits (209), Expect = 2e-19
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 547 PLHNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLK 599
L A G + +L+ +GA+V D TPLH AA K LL+ GAD+ +
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 600 NTDGKTALDLAV 611
+ GKTA D+++
Sbjct: 87 DKFGKTAFDISI 98
Score = 82.2 bits (204), Expect = 7e-19
Identities = 27/71 (38%), Positives = 35/71 (49%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADPTLH 276
L A G + +L+ GA+V A D TPLH AA LEV LLL GAD
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 277 NCHSKSAIDVA 287
+ K+A D++
Sbjct: 87 DKFGKTAFDIS 97
Score = 77.2 bits (191), Expect = 4e-17
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 551 ACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNTDG 603
S+ H+ + LV G+++ +DL L EAA + L+ +GAD+ K+ +G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG-SDLG--KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 604 KTALDLA 610
T L LA
Sbjct: 58 STPLHLA 64
Score = 74.5 bits (184), Expect = 4e-16
Identities = 37/158 (23%), Positives = 53/158 (33%), Gaps = 49/158 (31%)
Query: 406 ASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKD 465
S + L+ H+ D L AA + V L+A+GADV
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM----GSDLG--KKLLEAARAGQDDEVRILMANGADV---- 50
Query: 466 NATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
A DK G TPLH AA+ G ++ LL L G D
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLL-LE---------------AGAD------------ 82
Query: 526 VNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
V A+D G+ + G+ ++ E+L
Sbjct: 83 VXAQDKFGK-----------TAFDISIDNGNEDLAEIL 109
Score = 73.4 bits (181), Expect = 8e-16
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQ 1122
+ +GA+V D TPLH AA G ++V+LLL+ GAD +++ G T D+ + G++
Sbjct: 44 MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE 103
Query: 1123 DVSDLLR 1129
D++++L+
Sbjct: 104 DLAEILQ 110
Score = 73.0 bits (180), Expect = 1e-15
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 26/110 (23%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
V G+++ +DL L EAA G+ D VR+L+ +GAD + K+++G+TPL L
Sbjct: 14 VPRGSHMG-SDLG--KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL------- 63
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
AA+ G+L V+ LL A ++ +D G+ T ++
Sbjct: 64 -------------AARNGHLEVVKLLLEAGADVXAQDKFGK--TAFDISI 98
Score = 71.8 bits (177), Expect = 4e-15
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 721 KAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHR 780
L+ +G+H+ + AA G D + L+ GA V D G T LH
Sbjct: 7 HHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63
Query: 781 TARDDKTQAVRVLLSHNAD 799
AR+ + V++LL AD
Sbjct: 64 AARNGHLEVVKLLLEAGAD 82
Score = 68.8 bits (169), Expect = 3e-14
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
L A + + V L+ GA + K+K P+HLAA GHL+V+ LL G
Sbjct: 24 LGKKLLEAARA---GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVL 793
A V D G+TA + + +L
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 66.1 bits (162), Expect = 3e-13
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 221 ACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGAD 272
S+ H + L+ G+++ + DL L EAA + + +L++ GAD
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS-DLG--KKLLEAARAGQDDEVRILMANGAD 49
Score = 57.6 bits (140), Expect = 3e-10
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 217 PLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLL 266
PLH A GH EV ++L++AGA+V A D + T + ++ +L
Sbjct: 60 PLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 54.5 bits (132), Expect = 4e-09
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 1084 AAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNL 1143
++ L+ G+ D LL+AA+ G
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKK--------------------LLEAARAGQD 37
Query: 1144 GRVQKLLTAD-NINCRDAQGRNSTPLHLAA 1172
V+ L+ ++ +D G TPLHLAA
Sbjct: 38 DEVRILMANGADVAAKDKNGS--TPLHLAA 65
Score = 49.5 bits (119), Expect = 2e-07
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLL 43
G +VV+ LL +GA + A+D G + G+ D+ +L
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 49.1 bits (118), Expect = 3e-07
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 36/96 (37%)
Query: 31 ACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVY 90
S H L+ ++ + L EAA G+ D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDE------VR---------- 41
Query: 91 GIGGGTGCPMHKDRSCYL-AHGADPFLKNQEGQTPL 125
L A+GAD K++ G TPL
Sbjct: 42 ----------------ILMANGADVAAKDKNGSTPL 61
Score = 46.0 bits (110), Expect = 4e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 748 AADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNAD 799
+ H L+ G+ + D L AR + VR+L+++ AD
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG-SD--LGKKLLEAARAGQDDEVRILMANGAD 49
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold,
transferase, NAD+, ADP-ribosylat transferase-transferase
inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB:
3goy_A* 3smi_A* 3se2_A*
Length = 193
Score = 83.9 bits (207), Expect = 2e-18
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 871 QPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERY 930
Q +++LL D E+ TVA + T S + I +I+++QN LW Y
Sbjct: 6 QQNFCVVELLPSDPEYNTVASKFNQTC-------------SHFRIEKIERIQNPDLWNSY 52
Query: 931 VHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHA 970
++ + +NG +E+ LFHG+ + + + GF+ +A
Sbjct: 53 QAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 94
Score = 38.1 bits (88), Expect = 0.007
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 1175 KRHLLMCRVTLG-----KSFLQFNAIKMAHAPP-GHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
++H+ RV G L K P + +V +V + Q
Sbjct: 127 RKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPS----LFVAFYDYQ 182
Query: 1229 V 1229
Sbjct: 183 A 183
Score = 29.2 bits (65), Expect = 6.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 335 DTPLPGTLLIDLLSDDKEFITVAEEMQATVREHR 368
D +++LL D E+ TVA + T R
Sbjct: 3 DMKQQNFCVVELLPSDPEYNTVASKFNQTCSHFR 36
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase,
structural genomics, structural genomics consortium,
SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A
{Homo sapiens}
Length = 217
Score = 83.6 bits (206), Expect = 4e-18
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 865 SSPSFSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNR 924
+ + P L L + EF V T+ R + ++R+++V +
Sbjct: 2 AGQTLKGPWNNLERLAENTGEFQEVVRAFYDTLDAARSS---------IRVVRVERVSHP 52
Query: 925 KLWERYVHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHA 970
L ++Y R + + E++L+HG+ + I GF+
Sbjct: 53 LLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSFC 100
Score = 38.9 bits (90), Expect = 0.006
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 1175 KRHLLMCRVTLGKSFLQFNAIKM------AHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQ 1228
+ + + RV G ++ H + S M +V++ Q
Sbjct: 133 HKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPS----IFVIFHDTQ 188
Query: 1229 V 1229
Sbjct: 189 A 189
Score = 31.2 bits (70), Expect = 1.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 65 AAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTG 97
+ T G+YFA+ +S S Q Y G
Sbjct: 100 CGRNATVYGKGVYFAKRASLSVQDRYSPPNADG 132
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE
consortium, glycosyltransferase, NAD, nucleus; 2.20A
{Homo sapiens} PDB: 3gey_A*
Length = 221
Score = 80.5 bits (198), Expect = 6e-17
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 848 SAYGYRHKLLKGIEKLCSSPS----FSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDN 903
+ G + + P + ++ L E+ T+ ++ T
Sbjct: 7 HSSGVDLGTENLYFQSMNLPEHWTDMNHQLFCMVQLEPGQSEYNTIKDKFTRT------- 59
Query: 904 GQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGSP--FINAIV 961
S Y I +I+++QN LW+ Y ++ ++ +N + +ER+LFHG+ + +
Sbjct: 60 ------CSSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVN 113
Query: 962 QKGFDERHA 970
Q GF+ A
Sbjct: 114 QHGFNRSCA 122
Score = 42.4 bits (99), Expect = 4e-04
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 1179 LMCRVTLGKSFLQFNAIKMAHAPP-GHHSVMGRPSSGGLYFPEYVVYRGEQV 1229
L T G++ L K H P SV S +VV+ Q
Sbjct: 164 LTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPK----LFVVFFDNQA 211
Score = 29.7 bits (66), Expect = 4.4
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 65 AAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPM 100
A K G YFA +S S + Y G
Sbjct: 122 AGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKH 157
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex,
catalytic fragment, structural GEN structural genomics
consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo
sapiens}
Length = 198
Score = 73.5 bits (180), Expect = 8e-15
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 871 QPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWERY 930
PG I L S +E+ V T Y + +I++VQN LWE Y
Sbjct: 9 DPGFQKITLSSSSEEYQKVWNLFNRT-------------LPFYFVQKIERVQNLALWEVY 55
Query: 931 VHRRAEVADENGGQAH-ERMLFHGSP--FINAIVQKGFDERHAIRYVHR 976
++ ++ +NGG+A ER LFHG+ F++AI Q+ FD R +
Sbjct: 56 QWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTS 104
Score = 48.9 bits (116), Expect = 2e-06
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 1175 KRHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFP-EYVVYRGEQV 1229
+ + RV +G+ + A G + + P +V++ QV
Sbjct: 128 THTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQV 183
Score = 30.0 bits (67), Expect = 4.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 75 GIYFAEHSSKSNQYVYGIGGG 95
G YFA ++ S+ Y
Sbjct: 108 GSYFARDAAYSHHYSKSDTQT 128
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 72.7 bits (178), Expect = 7e-14
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 24/152 (15%)
Query: 494 SPSAANDPLRELFEACKGGDLTKVKKLVNP-----QTVNARDTAGRKSTPLHFAAGLVPL 548
+ L L EA K D+ + + + + + T LH A
Sbjct: 123 KHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV----- 177
Query: 549 HNACSYGHYEVTEMLVKHGANVNVADLWKFTPLHEAA-------AKALLQHGADINLKNT 601
+ + + LV++ N++ T LH K LL+ A I + N
Sbjct: 178 -RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE 236
Query: 602 DGKTALDLAVPCTRAVLSGDHKKEELLEAARM 633
G+T LD+ A EELL A
Sbjct: 237 SGETPLDI------AKRLKHEHCEELLTQALS 262
Score = 69.3 bits (169), Expect = 8e-13
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 1059 LTPHNVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDL-V 1117
+ V++ N++ T LH A+ ++LLL+ A N G TPLD+
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 1118 REGDQDVSDLLR 1129
R + +LL
Sbjct: 247 RLKHEHCEELLT 258
Score = 66.6 bits (162), Expect = 7e-12
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 6/145 (4%)
Query: 656 CCKMELMFMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYT-----GDTPL 709
+ K H L EA + D + + V + K P +T L
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173
Query: 710 HCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNL 769
H AV S IV+ L++ +L+++ + +H + + L LLR A + +
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233
Query: 770 VDVLGQTALHRTARDDKTQAVRVLL 794
+ G+T L R +L
Sbjct: 234 ANESGETPLDIAKRLKHEHCEELLT 258
Score = 63.1 bits (153), Expect = 9e-11
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 217 PLHNACSYG---HFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
LH A + + L++ N++ T LH E LLL A
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 274 TLHNCHSKSAIDVAPTRE-------LQQRLSNEFKGH 303
+ N ++ +D+A + L Q LS F H
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268
Score = 59.6 bits (144), Expect = 1e-09
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 383 GENSKKLLQEPPSVVDLESQLLEASKGGDMTVV--TRLLSSCPHIVNCRDLDGRHSTPLH 440
G + + + E+ L A + D T + L ++ + G T LH
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS--TALH 210
Query: 441 FAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
+ + ++ LL A + ++ G TPL A + LL
Sbjct: 211 YCCLTDNAECLKLLLRGKASI----EIANESGETPLDIAKRLKHEHCEELL 257
Score = 57.7 bits (139), Expect = 5e-09
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+V++L+ + ++ + G LH C +A+ ++LLL A+ + TPL A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 66 AKGKTDV 72
Sbjct: 247 RLKHEHC 253
Score = 54.2 bits (130), Expect = 8e-08
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 38/145 (26%)
Query: 446 NRVAVVEYLLAHGADVHSKDNATD--KWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLR 503
+ + A G D+ K + + T LH A + ++
Sbjct: 141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL--------- 191
Query: 504 ELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEML 563
+ N ++ + G T LH+ C + E ++L
Sbjct: 192 ----------------VQNSGNLDKQTGKGS--TALHYC---------CLTDNAECLKLL 224
Query: 564 VKHGANVNVADLWKFTPLHEAAAKA 588
++ A++ +A+ TPL A
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLK 249
Score = 49.2 bits (117), Expect = 3e-06
Identities = 21/152 (13%), Positives = 36/152 (23%), Gaps = 44/152 (28%)
Query: 7 VEYLLASGA------SIHARDDGGLHPLHNACSFG---HADVVRLLLEADANPNTRDNWN 57
+ A G + + LH A +V L++ N + +
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205
Query: 58 FTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLK 117
T LH + L A +
Sbjct: 206 STALHYCCLTDNAECL-------------------------------KLLLRGKASIEIA 234
Query: 118 NQEGQTPLDLTV----AEDVRSLLQDAMAQYP 145
N+ G+TPLD+ L Q ++
Sbjct: 235 NESGETPLDIAKRLKHEHCEELLTQALSGRFN 266
Score = 48.5 bits (115), Expect = 6e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 744 PIHLA---ADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADT 800
+HLA D L ++D L++ ++ G TALH D + +++LL A
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 801 SIV 803
I
Sbjct: 232 EIA 234
Score = 47.7 bits (113), Expect = 1e-05
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN 49
+ ++ LL ASI ++ G PL A H LL +A +
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 46.9 bits (111), Expect = 2e-05
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLL 267
G LH C + E ++L++ A++ + TPL A LL
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 46.9 bits (111), Expect = 2e-05
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 1079 TPLHEAAAKGKAD---IVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGNSAL 1134
T LH A IV L+Q+ + K+ G+T L + + LL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA- 229
Query: 1135 LDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAA 1172
+I + G TPL +A
Sbjct: 230 -------------------SIEIANESGE--TPLDIAK 246
Score = 35.4 bits (81), Expect = 0.10
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQ 1098
++ A++ +A+ TPL A LL Q
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 31.1 bits (70), Expect = 2.3
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 1129 RGNSALLDAAKKGNLGRVQK----LLTADNINCRDAQGRNSTPLHLAAGEKRHLLMC 1181
+AL A + + + + + N++ + +G T LH +
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS--TALHYCCLTDNAECLK 222
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 70.8 bits (173), Expect = 4e-13
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1066 HGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQDV 1124
+G +++ T LH AA + D ++LLL+ A N G T LD+ R+ ++
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 1125 SDLLR 1129
+LL
Sbjct: 275 EELLE 279
Score = 62.7 bits (152), Expect = 2e-10
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 214 GLVPLHNACSYGH---FEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEG 270
+ LH A + + + +I+ G +++A T LH AA ++ + LLL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 271 ADPTLHNCHSKSAIDVA 287
A N ++A+D+A
Sbjct: 250 ALVGTVNEAGETALDIA 266
Score = 62.3 bits (151), Expect = 2e-10
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 705 GDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLG 764
+ LH AV +V+ +I+ G HL+ K + +H AA D L LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 765 AKVNLVDVLGQTALHRTARDDKTQAVRVL 793
A V V+ G+TAL + + +L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 57.3 bits (138), Expect = 1e-08
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+V++++ +G + A+ G LH A + D ++LLL+ A T + T L A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 66 AKGKTD 71
K +
Sbjct: 268 KKHHKE 273
Score = 56.5 bits (136), Expect = 2e-08
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 10/145 (6%)
Query: 350 DKEFITVAEEMQATVREHRDNGQSGGYTALQVAGENSKKLLQEPPSVVDLESQLLEASKG 409
+ F + N G++ + L P + E L A K
Sbjct: 141 EHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKV 200
Query: 410 GDMT---VVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDN 466
+ +V ++ + H ++ + DG T LH+AA YN+ ++ LL A V
Sbjct: 201 ANQASLPLVDFIIQNGGH-LDAKAADGN--TALHYAALYNQPDCLKLLLKGRALV----G 253
Query: 467 ATDKWGFTPLHEAAQKGRTQLSALL 491
++ G T L A +K + LL
Sbjct: 254 TVNEAGETALDIARKKHHKECEELL 278
Score = 55.0 bits (132), Expect = 5e-08
Identities = 37/201 (18%), Positives = 54/201 (26%), Gaps = 70/201 (34%)
Query: 435 HSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKW--GFTPLHEAAQKGRTQLSALLP 492
L A + V A+G D D LH A + L+
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD 210
Query: 493 LSPSAANDPLRELFEACKGGDLTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNAC 552
+ N ++A+ G T LH+AA
Sbjct: 211 F-------------------------IIQNGGHLDAKAADGN--TALHYAA--------- 234
Query: 553 SYGHYEVTEMLVKHGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVP 612
Y + ++L+K A V N G+TALD+
Sbjct: 235 LYNQPDCLKLLLKGRALVGT--------------------------VNEAGETALDI--- 265
Query: 613 CTRAVLSGDHKKEELLEAARM 633
A + EELLE A+
Sbjct: 266 ---ARKKHHKECEELLEQAQA 283
Score = 49.6 bits (118), Expect = 3e-06
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 727 LIRKGAHLNEKNKELLA------PIHLA---ADLGHLDVLDTLLRLGAKVNLVDVLGQTA 777
G + A +HLA A+ L ++D +++ G ++ G TA
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229
Query: 778 LHRTARDDKTQAVRVLLSHNADTSIV-----SLLVIFSCSTNLGLKHLLELFEREQITL 831
LH A ++ +++LL A V + L I + + LLE +
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 288
Score = 49.2 bits (117), Expect = 4e-06
Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 44/149 (29%)
Query: 9 YLLASGASI------HARDDGGLHPLHNACSFGHAD---VVRLLLEADANPNTRDNWNFT 59
A+G LH A + +V +++ + + + T
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AA + D L A N+
Sbjct: 229 ALHYAALYNQPDCL-------------------------------KLLLKGRALVGTVNE 257
Query: 120 EGQTPLDLTV----AEDVRSLLQDAMAQY 144
G+T LD+ E L Q +
Sbjct: 258 AGETALDIARKKHHKECEELLEQAQAGTF 286
Score = 48.1 bits (114), Expect = 9e-06
Identities = 20/118 (16%), Positives = 31/118 (26%), Gaps = 32/118 (27%)
Query: 1064 VKHGANVNVADLWKF------TPLHEAAAKGKAD---IVRLLLQHGADPSKKNRDGATPL 1114
+G + LH A +V ++Q+G K DG T L
Sbjct: 171 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230
Query: 1115 DLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
AA ++ LL + + G T L +A
Sbjct: 231 HY--------------------AALYNQPDCLKLLLKGRALVGTVNEAGE--TALDIA 266
Score = 47.3 bits (112), Expect = 1e-05
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADAN-PNTRDNWNF 58
Y + D ++ LL A + ++ G L A H + LL +A A + ++
Sbjct: 236 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDY 294
Score = 44.2 bits (104), Expect = 2e-04
Identities = 18/66 (27%), Positives = 24/66 (36%)
Query: 214 GLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGADP 273
G LH A Y + ++L+K A V ++ T L A K E LL A
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285
Query: 274 TLHNCH 279
H
Sbjct: 286 FAFPLH 291
Score = 33.4 bits (76), Expect = 0.37
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQ 1098
+K A V + T L A K + LL Q
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 32.7 bits (74), Expect = 0.68
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 20/105 (19%)
Query: 1082 HEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKKG 1141
A V +G D + L A K
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAP--------------EELVLHLAVKVA 201
Query: 1142 NLGRVQK----LLTADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
N + + +++ + A G T LH AA + +
Sbjct: 202 NQASLPLVDFIIQNGGHLDAKAADGN--TALHYAALYNQPDCLKL 244
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein
1; arfgap domain, zinc-binding module, GTPase activ
metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 69.8 bits (170), Expect = 1e-12
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++GANVN AD PLH A G + L L+ GAD ++ +G PL + E +
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 1123 DVSDLLRGNSALLDAAKKGNLG 1144
D+ LLR A +G G
Sbjct: 315 DIVTLLRLAKMREAEAAQGQAG 336
Score = 67.5 bits (164), Expect = 7e-12
Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 2/154 (1%)
Query: 134 RSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTS 193
R + P P P + +++ P PT
Sbjct: 157 RRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTM 216
Query: 194 PPQPLALETVIMPSGQAVALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHE 253
V +G PL A + E L++ GANVN D PLH
Sbjct: 217 ADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274
Query: 254 AASKSRLEVCSLLLSEGADPTLHNCHSKSAIDVA 287
A + L L GAD + + + +A
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 55.6 bits (133), Expect = 5e-08
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
E+LL +GA+++ D G PLH+A GH + L L+ A+ RD+ PL A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 66 AKGKTDV 72
D+
Sbjct: 310 ETANADI 316
Score = 55.6 bits (133), Expect = 5e-08
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 382 AGENSKKLLQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHF 441
+ + + E + + L AS + VN + ++TPL
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ 241
Query: 442 AAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALL 491
A N + E+LL +GA+V N D G PLH A G T L+ L
Sbjct: 242 ATAANSLLACEFLLQNGANV----NQADSAGRGPLHHATILGHTGLACLF 287
Score = 54.8 bits (131), Expect = 8e-08
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 692 LTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADL 751
+DV TPL A + E L++ GA++N+ + P+H A L
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSL---LACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 752 GHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHN 797
GH + L+ GA + D G+ L A + + LL
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLT-IAMETANADIVTLLRLA 323
Score = 54.8 bits (131), Expect = 9e-08
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 37/155 (23%)
Query: 10 LLASGASIHARDDG--GLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAAAK 67
LA GA ++ + G PL A + LL+ AN N D+ PLH A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 68 GKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQEGQTPLDL 127
G T + +L GAD ++ EG+ PL +
Sbjct: 279 GHTGLA-------------------------------CLFLKRGADLGARDSEGRDPLTI 307
Query: 128 TV----AEDVRSLLQDAMAQYPGAPSCAETASVPP 158
+ A+ V L M + A A +
Sbjct: 308 AMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342
Score = 52.9 bits (126), Expect = 4e-07
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 390 LQEPPSVVDLESQLLEASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAAGYNRVA 449
+ D + L++A+ + LL + ++ N D GR PLH A
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGR--GPLHHATILGHTG 282
Query: 450 VVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAAND 500
+ L GAD+ ++D+ G PL A + + LL L+ +
Sbjct: 283 LACLFLKRGADLGARDSE----GRDPLTIAMETANADIVTLLRLAKMREAE 329
Score = 49.0 bits (116), Expect = 6e-06
Identities = 38/181 (20%), Positives = 56/181 (30%), Gaps = 73/181 (40%)
Query: 454 LLAHGADVHSKDNATDKWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGD 513
LAHGADV+ + D TPL +A L
Sbjct: 219 ALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFL---------------------- 254
Query: 514 LTKVKKLVNPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANVNVA 573
L N VN D +AG PLH+A GH +
Sbjct: 255 ------LQNGANVNQAD-----------SAGRGPLHHATILGHTGL-------------- 283
Query: 574 DLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARM 633
A L+ GAD+ ++++G+ L +A+ + + LL A+M
Sbjct: 284 ------------ACLFLKRGADLGARDSEGRDPLTIAME------TANADIVTLLRLAKM 325
Query: 634 M 634
Sbjct: 326 R 326
Score = 47.1 bits (111), Expect = 3e-05
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 685 PSRVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRKGAHLNEKN--KELL 742
P ++ + + G + P + + GA +N N ++
Sbjct: 180 PGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL---PTMADALAHGADVNWVNGGQDNA 236
Query: 743 APIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQTALHRTARDDKTQAVRVLLSHNADTSI 802
P+ A L + LL+ GA VN D G+ LH T + L AD
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 803 V 803
Sbjct: 297 R 297
Score = 45.2 bits (106), Expect = 9e-05
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 1066 HGANVN--VADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQD 1123
HGA+VN TPL +A A LLQ+GA+ ++ + G PL
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH------- 274
Query: 1124 VSDLLRGNSALLDAAKKGNLGRVQKLLTAD-NINCRDAQGRNSTPLHLA 1171
A G+ G L ++ RD++GR PL +A
Sbjct: 275 -------------ATILGHTGLACLFLKRGADLGARDSEGR--DPLTIA 308
Score = 43.2 bits (101), Expect = 4e-04
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 10/176 (5%)
Query: 97 GCPMHKDRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASV 156
+ R P + + P ++ +D + +PGA +
Sbjct: 151 LPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHP 210
Query: 157 P-PPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQPLALETVIMPSGQAV---- 211
P P+ + G +V+ Q + + L + L ++ +G V
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNAT-----PLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLL 267
+ G PLH+A GH + + +K GA++ A D PL A + ++ +LL
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 41.7 bits (97), Expect = 0.001
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDN 55
G + L GA + ARD G PL A +AD+V LL A
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332
Score = 34.8 bits (79), Expect = 0.18
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 1081 LHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRGNSALLDAAKK 1140
+ + L HGAD + N + L+ A
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQ------------------DNATPLIQATAA 245
Query: 1141 GNLGRVQKLL-TADNINCRDAQGRNSTPLHLAAGEKRHLLMCR 1182
+L + LL N+N D+ GR PLH A L C
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGR--GPLHHATILGHTGLACL 286
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense,
immune system, transferase; 1.05A {Homo sapiens}
Length = 173
Score = 65.8 bits (160), Expect = 2e-12
Identities = 17/103 (16%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Query: 870 SQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWER 929
S L ++ E++ V+E +A+ + I +I+K++N +L ++
Sbjct: 1 SSKKYKLSEIHHLHPEYVRVSEHFKAS-------------MKNFKIEKIKKIENSELLDK 47
Query: 930 YVHRRAEVADENGGQAHERMLFHGSP--FINAIVQKGFDERHA 970
+ +++++ +E ++LF+ + ++ +I FD
Sbjct: 48 FTWKKSQMKEE------GKLLFYATSRAYVESICSNNFDSFLH 84
Score = 43.5 bits (102), Expect = 1e-04
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 1175 KRHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQV 1229
+ + +V +GK F++ N PP S + S+ +V+++ +QV
Sbjct: 114 NVVMFVAQVLVGK-FIEGNI-TYTSPPPQFDSCVDTRSNPS----VFVIFQKDQV 162
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 59.7 bits (145), Expect = 2e-11
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 813 TNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQP 872
+L ++ L +E+I L+ L + DL+ + V G R K+L + + + +P
Sbjct: 10 ASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISV-PLGPREKILGAVRRR--RQAMERP 66
Query: 873 GTL 875
L
Sbjct: 67 PAL 69
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 59.8 bits (145), Expect = 2e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQ 871
+ L+ ++ FERE+I+ D L + H++L+ +GVS G++ +L+ ++ LC+ S
Sbjct: 22 GLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGPS 81
Query: 872 PG 873
G
Sbjct: 82 SG 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 8e-11
Identities = 100/594 (16%), Positives = 161/594 (27%), Gaps = 230/594 (38%)
Query: 391 QEPPSVVDLESQLL-------EASKGGDMTVVTRLLSSCPHIVNCRDLDGRHSTPLHFAA 443
EP + +L + L E SK G V L L F
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-----------LT-------EFEN 93
Query: 444 GYNRVAVVEYLLAHGADVHS------KDNAT-----------------------DKWGFT 474
YL G D+H+ ++N T DK +
Sbjct: 94 --------CYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 475 PLHEAAQKGRTQLSALL--------PLSPSAANDPLRELFEACKG--GDLTKV-----KK 519
L A +G QL A+ + LR+L++ GDL K +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYF------EELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 520 LV-NPQTVNARDTAG---------RKSTP----LHFAAGLVPLHNACSYGHYEVTEMLVK 565
L+ T G +TP L PL HY VT
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT--AKL 255
Query: 566 HGANVNVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKE 625
G +L + K H + TA+ +A S E
Sbjct: 256 LG--FTPGELRSYL-------KGATGHSQGL-------VTAVAIA-----ETDSW----E 290
Query: 626 ELLEAARMMGGGLHRYTWPLGTTDIGWCSCCCKMELMFMPRIKDEFKGH------CLLEA 679
+ R + + IG P I ++ + +L +
Sbjct: 291 SFFVSVRKA---ITVLFF------IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-S 340
Query: 680 CRQGDPSRVKKFLTSDVVNFKHPYTGDTPLHCAVT-SPYPKRKAIV----ESLIRKGAHL 734
+V+ ++ + N P + ++ + +V +SL L
Sbjct: 341 ISNLTQEQVQDYV--NKTNSHLP--AGKQVEISLVNGA---KNLVVSGPPQSLYGLNLTL 393
Query: 735 NEKNK---------------------ELL---APIH---L--AADLGHLDVLDTLLRLGA 765
K K L +P H L A+DL + D++ + A
Sbjct: 394 -RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 766 KVNLVDVLGQTALH-RTARDDKTQAVRVLLSHNADTSIVSLLVIFSC----STNLGLKHL 820
K D + D +RV LS + IV ++ +T H+
Sbjct: 453 K----D-IQIPVYDTFDGSD-----LRV-LSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 821 LE-----------LFEREQITLD------ILA---EMNHEDLKQVGVSAYGYRH 854
L+ L R D I+A ++N +D YG++
Sbjct: 502 LDFGPGGASGLGVLTHR---NKDGTGVRVIVAGTLDINPDDD-------YGFKQ 545
Score = 58.5 bits (141), Expect = 1e-08
Identities = 104/589 (17%), Positives = 183/589 (31%), Gaps = 214/589 (36%)
Query: 469 DKWGFTPL---HEAAQKGRTQLSALLPLSPSAANDPLRELFEACKGGDLTKVKKLVNPQT 525
D + PL H G + L+P + L+E F K L P
Sbjct: 2 DAYSTRPLTLSH-----GSLEHVLLVPTASFFIASQLQEQF----------NKILPEPTE 46
Query: 526 VNARDTAGRKSTP-------LHFAAGLVPLHNACSYGHYEVTEMLVKH-------GANVN 571
A D +TP L + + LV + +V + + G +++
Sbjct: 47 GFAADDE--PTTPAELVGKFLGYVSSLVEPSKVGQFD--QVLNLCLTEFENCYLEGNDIH 102
Query: 572 --VADLWKFTPLHEAAAKALLQH--GADINLKNTDGKT---ALDLAVPCTRAVLSGDHKK 624
A L + K L+++ A I K K AL RAV G+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGN--- 153
Query: 625 EELLEAARMM---GGGLHRYTWPLGTTDIGWCSCCCKMEL-----MFMPRIKD--EFKGH 674
A+++ GG G TD + EL + + D +F
Sbjct: 154 ------AQLVAIFGGQ--------GNTDDYF------EELRDLYQTYHVLVGDLIKFSAE 193
Query: 675 CLLEACRQGDPSRVKKFLTS--DVVNF-KHPYTGDTP-----LHCAVTSPYPKRKAIVES 726
L E R +K T +++ + ++P +TP L ++ P
Sbjct: 194 TLSELIR--TTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLSIPISCP---------- 239
Query: 727 LIRKGAHLNEKNKELLAPIHLAA-----DLGHLDVLDTLLRLGAKVNLVDVLGQTAL--- 778
LI ++ H ++ L GA + ++ TA+
Sbjct: 240 LI-----------GVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLV--TAVAIA 284
Query: 779 --------HRTARDDKTQAVRVLL-----SHNA--DTSIVSLLVIFSCSTN-------LG 816
+ R +A+ VL + A +TS+ ++ S N L
Sbjct: 285 ETDSWESFFVSVR----KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 817 LKHLLELFEREQITLDILAEMNHE--DLKQVGVSAY-GYRHKLLKG-----------IEK 862
+ +L +EQ+ D + + N KQV +S G ++ ++ G + K
Sbjct: 341 ISNL----TQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 863 LCSSPS-------FSQ--------------P----------GTLLIDLLSDDKEFITVAE 891
+ FS+ P + DL+ ++ F A+
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF--NAK 453
Query: 892 EMQATVREHRDNGQ-----SGGIFSRYNIIRIQKVQNRKLWERYVHRRA 935
++Q V +G SG I R I+ ++ WE +A
Sbjct: 454 DIQIPV-YDTFDGSDLRVLSGSISER--IVD-CIIRLPVKWETTTQFKA 498
Score = 47.0 bits (111), Expect = 5e-05
Identities = 51/328 (15%), Positives = 92/328 (28%), Gaps = 108/328 (32%)
Query: 924 RKLWERYVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERHAIRYVHRRAEVADE 983
+ +W R AD H + + S I IV +H E
Sbjct: 1643 QDVWNR--------ADN-----HFKDTYGFS--ILDIVINNPVNL----TIHFGGE---- 1679
Query: 984 NGGQA----HERMLFHGSPFINAIVQKGFDERHAYIGG-MFGAGK--------------- 1023
G+ + M+F +K F E + + F + K
Sbjct: 1680 -KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 1024 ------RVWLGDVKQGVDQLS--MAG---GLETGTKKKKKNMYYGTLTPHNVKHGANVNV 1072
+G+ AG G E Y A ++
Sbjct: 1739 MEKAAFEDLK---SKGLIPADATFAGHSLG-E-----------YA----------ALASL 1773
Query: 1073 ADLWKFTPLHEAAAKGKADIVRL--LLQHGADPSKKNRDGATPLDLVREGDQDVSDLLRG 1130
AD+ E+ + +V + A P ++ G + ++ V+
Sbjct: 1774 ADVMSI----ESLVE----VVFYRGMTMQVAVP--RDELGRSNYGMIAINPGRVA--ASF 1821
Query: 1131 NSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTPLHLAAGEKRHL-LMCRVTLGKSF 1189
+ L + R L+ N N + Q ++AAG+ R L + V +F
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQ-------YVAAGDLRALDTVTNVL---NF 1871
Query: 1190 LQFNAIKMAHAPPGHHSVMGRPSSGGLY 1217
++ I + S+ G L+
Sbjct: 1872 IKLQKIDIIELQ---KSLSLEEVEGHLF 1896
Score = 41.6 bits (97), Expect = 0.002
Identities = 60/336 (17%), Positives = 94/336 (27%), Gaps = 111/336 (33%)
Query: 7 VEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTP-LHEAA 65
+YLL+ S PL H V LL FTP +
Sbjct: 228 KDYLLSIPISC---------PLIGVIQLAHYVVTAKLL------------GFTPGELRSY 266
Query: 66 AKGKTDVCIGIY-------------FAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGA 112
KG T G+ F K+ ++ IG + A
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-------------VRCYEA 313
Query: 113 DPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASV--PPPSQYSNTSCGDN 170
P T L S+L+D++ G PS S+ Q + N
Sbjct: 314 YP-------NTSLPP-------SILEDSLENNEGVPSPM--LSISNLTQEQVQDYVNKTN 357
Query: 171 VSLPPPAQYSGS---GGDSVSLPPTSPPQPL-----ALETVIMPSG--QA--------VA 212
LP Q S G ++ + + PPQ L L PSG Q+ +
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 213 LGL------VPLHNACSYGHFEVTEM----LIKAGANVNAMDLWQFTPLH---------E 253
P H +++ L+K + NA D+ Q P++
Sbjct: 416 FSNRFLPVASPFH--SHLLV-PASDLINKDLVKNNVSFNAKDI-QI-PVYDTFDGSDLRV 470
Query: 254 AASKSRLEVCSLLLSEGAD-PTLHNCHSKSAIDVAP 288
+ + ++ T + +D P
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 38.5 bits (89), Expect = 0.018
Identities = 47/334 (14%), Positives = 91/334 (27%), Gaps = 127/334 (38%)
Query: 112 ADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNV 171
AD K+ G + LD+ V + +L + G + G
Sbjct: 1649 ADNHFKDTYGFSILDI-VINNPVNL-----TIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 172 SLPPPAQYSGS------GGDSVSLPPTSPPQPLALETV------------IMPSGQAVAL 213
+ + + + L T QP AL + ++P+ A
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATFA- 1760
Query: 214 GLVPLHNACSYGHFE----VTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSE 269
G H S G E + A+V M + E+ + ++
Sbjct: 1761 G----H---SLG--EYAALA------SLADV--MSI-------ESLVE--------VVFY 1788
Query: 270 -GADPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNF 328
G + VA R+ R + + A +P RV + + + +
Sbjct: 1789 RG-----------MTMQVAVPRDELGR------SNYGMIAI---NPGRVAASFSQEALQY 1828
Query: 329 KHPYTGDTPLPGTLLIDLLSDDK-EFITVAEEMQATVREHRDN----GQ----SGGYTAL 379
+++ + + + N Q +G AL
Sbjct: 1829 --------------VVERVGKRTGWLVEIV------------NYNVENQQYVAAGDLRAL 1862
Query: 380 QVAGE-----NSKKL----LQEPPSVVDLESQLL 404
+K+ LQ+ S+ ++E L
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 33.5 bits (76), Expect = 0.54
Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 101/260 (38%)
Query: 785 DKTQAVRVLLSHNAD-----------TSIV-----SLLVIFSCSTNLGLKHLLELFEREQ 828
++A + + + AD IV +L + F ++ E
Sbjct: 1637 KTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 829 I------TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQPGTLLI----- 877
I T I E+N ++Y +R + + L S+ F+QP L+
Sbjct: 1696 IVDGKLKTEKIFKEINEH------STSYTFRSE-----KGLLSATQFTQPALTLMEKAAF 1744
Query: 878 -DLLSDDKEFITVAEEMQATVREHRDNGQS----------GGIFSRYNIIRIQKVQNRKL 926
DL S + + A+ A G S + S +++ +
Sbjct: 1745 EDLKS---KGLIPADATFA--------GHSLGEYAALASLADVMSIESLVEV-------- 1785
Query: 927 WERYVHRRAE-----VADENGGQAHERMLFHGSPFINAI----VQKGFDERHAIRYVHRR 977
V R V + G+++ M+ AI V F + A++YV R
Sbjct: 1786 ----VFYRGMTMQVAVPRDELGRSNYGMI--------AINPGRVAASFSQ-EALQYVVER 1832
Query: 978 A--------EVADEN--GGQ 987
E+ + N Q
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQ 1852
Score = 30.4 bits (68), Expect = 4.5
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 30/99 (30%)
Query: 1072 VADLW-KF-----TPLHEAAAKGKADIVRLLLQH-------GAD--------PSKKNRDG 1110
A+L KF + + + ++ L L G D + +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 1111 ATPLDLVR-------EGDQDVSDLLRGNSALLDAAKKGN 1142
+L++ + + NSAL A +GN
Sbjct: 117 VKTKELIKNYITARIMAKRPFDK--KSNSALFRAVGEGN 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 1e-09
Identities = 91/643 (14%), Positives = 176/643 (27%), Gaps = 207/643 (32%)
Query: 582 HEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEAARMMGGGLHRY 641
H+ K +L D + N D K D+ +++LS + ++ + G R
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDM----PKSILSKEEIDHIIMSKDAVSG--TLRL 67
Query: 642 TWPLGT---------------TDIGWCSCCCKMELMFMPRIKDEFKGHCLLEACRQGDPS 686
W L + + + M IK E + PS
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKF----------LMSPIKTEQR-----------QPS 106
Query: 687 RVKKFLTSDVVNFKHPYTGDTPLHCAVTSPYP-KRKAIVESLIRKGAHLNEKNKELLAPI 745
+ T + + D V + Y R L R+ L E I
Sbjct: 107 MM----TRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKL-RQ--ALLELRPAKNVLI 155
Query: 746 H---------LAAD-------------------LGHL----DVLDTLLRLGAKV--NLVD 771
+A D L + VL+ L +L ++ N
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 772 VLGQTALHRTARDDKTQAVRVLLSHNADTSIVSLLVI-------------FSCST----- 813
++ + +R LL + LLV+ SC
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 814 --------------NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKG 859
++ L H ++ +L K + ++L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLL-------KYLDCRPQDLPREVLTT 325
Query: 860 IEKLCSSP-SFSQPGTLLIDLLS-----DDKEFITVAEEMQATVR-----EHRDNGQSGG 908
+P S + D L+ + +++++ E+R
Sbjct: 326 ------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 909 IFSRYNI-IRIQKVQNRKLWERYVHRRAE-VADENGGQAHERMLFHGSPFINAIVQKGFD 966
+F + I + +W + V ++ H+ L + ++ +
Sbjct: 380 VF-PPSAHIPTILLS--LIWFDVIKSDVMVVVNK----LHKYSL---------VEKQPKE 423
Query: 967 ERHAIRYVHRRAEVADENGGQAHERMLFHGSPFINAIVQKGFDERH-----------AYI 1015
+I ++ +V EN H ++ H + + K FD ++I
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYN------IPKTFDSDDLIPPYLDQYFYSHI 477
Query: 1016 G---------GMFGAGKRV-----WLGDVK---QGVDQLSMAGGLETGTKKKKKNMYYGT 1058
G + V +L + K + L T + K Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQLKF---YKPY 533
Query: 1059 LTPHNVKHGANVNVADLWKFTPLHEAAA-KGK-ADIVRLLLQH 1099
+ ++ K+ VN + F P E K D++R+ L
Sbjct: 534 ICDNDPKYERLVN--AILDFLPKIEENLICSKYTDLLRIALMA 574
Score = 51.4 bits (122), Expect = 2e-06
Identities = 56/421 (13%), Positives = 111/421 (26%), Gaps = 125/421 (29%)
Query: 838 NHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQPGTLLIDLLSDDKEFITVAEEMQATV 897
+H D + G Y Y+ +L F D+ + V + +
Sbjct: 5 HHMDF-ETGEHQYQYK-DIL---------SVFEDA-------FVDNFDCKDVQDMPK--- 43
Query: 898 REHRDNGQSGGIFSRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGSPFI 957
I S+ I I ++ R + ++ F+
Sbjct: 44 ----------SILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEMVQK-------FV 83
Query: 958 NAIVQKGFD---ERHAIRYVHRRAEVADENGGQAHERMLFHGSPFINAIV---------Q 1005
+++ + I+ R+ + + +R+ F V +
Sbjct: 84 EEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 1006 KGFDE--RHAYIG--GMFGAGKRVWLGDVKQGVD-QLSMAGG---LETGTKKKKK----- 1052
+ E + G+ G+GK DV Q M L +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 1053 --NMYYGTLTPH---NVKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKN 1107
+ Y + P+ H +N+ L + + + +R LL+ K
Sbjct: 202 LQKLLY-QIDPNWTSRSDHSSNI---------KLRIHSIQAE---LRRLLKS-----KPY 243
Query: 1108 RDGATPLD-----------------LVREGDQDVSDLLRGNSA---LLDAAKKGNLGRVQ 1147
+ L L+ + V+D L + LD L +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDE 302
Query: 1148 KL-LTADNINC------RDAQGRNSTPLHLA-AGEKRHLLMCRVTLGKSFLQFNAIKMAH 1199
L ++C R+ N P L+ E + ++ N K+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATW---DNWKHVNCDKLTT 357
Query: 1200 A 1200
Sbjct: 358 I 358
Score = 37.5 bits (86), Expect = 0.037
Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 54/149 (36%)
Query: 4 KDVVEYLLASGASIH---------ARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRD 54
K E + SI ++ LH R +++ P T D
Sbjct: 419 KQPKESTI----SIPSIYLELKVKLENEYALH--------------RSIVDHYNIPKTFD 460
Query: 55 NWNFTPLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKD---RSCYLAHG 111
+ + P + D + H + R +L
Sbjct: 461 SDDLIPPYL-------DQYFYSHIGHHLKNIEHP------------ERMTLFRMVFL--- 498
Query: 112 AD-PFLKNQEGQTPLDLTVAEDVRSLLQD 139
D FL+ + + + + LQ
Sbjct: 499 -DFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Score = 30.2 bits (67), Expect = 5.2
Identities = 20/207 (9%), Positives = 55/207 (26%), Gaps = 62/207 (29%)
Query: 245 LWQFTP-------LHEAASKSRLEVCSLLLSEGADP---TLHNCHSKSAIDVAPTRELQQ 294
+W +++ S L+ + ++ + + + + + L +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 295 RLSNEF---KGHCL-------------------LEACRQGDPSRV--KKFLTSDVVNFKH 330
+ + + K L+ + + FL + K
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 331 PYTGDTPLPGTLLIDLLSDD---KEFIT----VAEEMQAT----VREHRDNGQSGGYTAL 379
+ +++ L K +I E + + + +N YT L
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 380 -QVAGENSKKLLQEPPSVV--DLESQL 403
++A L + + Q+
Sbjct: 568 LRIA-------LMAEDEAIFEEAHKQV 587
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 55.6 bits (134), Expect = 2e-09
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866
LL+ +IT +L ++ + +GVS+ G R KLL I++L
Sbjct: 41 RGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI 95
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 53.9 bits (130), Expect = 3e-09
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSS 866
++ L + FE +I L + ED ++GV+ G+R + + + +L S
Sbjct: 16 SIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGS 68
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 54.0 bits (130), Expect = 3e-09
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865
+ L+ ++ FERE+I+ D L + H++L+ +GVS G++ +L+ ++ LC+
Sbjct: 18 GLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCA 71
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 53.8 bits (129), Expect = 6e-09
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 794 LSHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGY 852
++ D I L + L+ + F R + T + HE+LKQ+G+SA G+
Sbjct: 21 MAAPQDLDIAVWL------ATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGH 74
Query: 853 RHKLLKGIEKLCSSPS 868
R ++L+ ++ S
Sbjct: 75 RKRILRLLQTGTEEGS 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein
3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers,
alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB:
3lvr_E*
Length = 497
Score = 58.8 bits (142), Expect = 8e-09
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1064 VKHGANVNVADLWKFTPLHEAAAKGKADIVRLLLQHGADPSKKNRDGATPLDLVRE-GDQ 1122
+++G +++ T LH AA + D ++LLL+ A N G T LD+ R+ +
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 253
Query: 1123 DVSDLLR 1129
+ +LL
Sbjct: 254 ECEELLE 260
Score = 57.2 bits (138), Expect = 2e-08
Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 11/220 (5%)
Query: 663 FMPRIKDEFKGHCLLEACRQGDPSRVKKFLTSDV-VNFKHPYT-----GDTPLHCAVTSP 716
F R E L A D V + + P + LH AV
Sbjct: 125 FARRCTPE--PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA 182
Query: 717 YPKRKAIVESLIRKGAHLNEKNKELLAPIHLAADLGHLDVLDTLLRLGAKVNLVDVLGQT 776
+V+ +I+ G HL+ K + +H AA D L LL+ A V V+ G+T
Sbjct: 183 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 242
Query: 777 ALHRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQITLDILAE 836
AL + + +L A + + S + ++ L + +
Sbjct: 243 ALDIARKKHHKECEELL--EQAQAGTFAFPLHVDYSWVISTEN-LSSDSSLSSPSALNSL 299
Query: 837 MNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQPGTLL 876
+ L ++ G K + L + T+L
Sbjct: 300 SSPSALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTIL 339
Score = 52.2 bits (125), Expect = 8e-07
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 205 MPSGQAVALGLVPLHNACSY---GHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLE 261
+P A A + LH A + + +I+ G +++A T LH AA ++ +
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 262 VCSLLLSEGADPTLHNCHSKSAIDVAPTRE-------LQQRLSNEFKGHC 304
LLL A N ++A+D+A + L+Q + F
Sbjct: 222 CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 271
Score = 48.0 bits (114), Expect = 2e-05
Identities = 37/202 (18%), Positives = 55/202 (27%), Gaps = 75/202 (37%)
Query: 454 LLAHGADVHSKDNATD--KWGFTPLHEAAQKGRTQLSALLPLSPSAANDPLRELFEACKG 511
A+G D D LH A +
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVK--------------------------VANQ 184
Query: 512 GDLTKVKKLV-NPQTVNARDTAGRKSTPLHFAAGLVPLHNACSYGHYEVTEMLVKHGANV 570
L V ++ N ++A+ G T LH+A Y +
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGN--TALHYA---------ALYNQPDC----------- 222
Query: 571 NVADLWKFTPLHEAAAKALLQHGADINLKNTDGKTALDLAVPCTRAVLSGDHKKEELLEA 630
K LL+ A + N G+TALD+A + EELLE
Sbjct: 223 ---------------LKLLLKGRALVGTVNEAGETALDIARKK------HHKECEELLEQ 261
Query: 631 ARMMGGGLH---RYTWPLGTTD 649
A+ Y+W + T +
Sbjct: 262 AQAGTFAFPLHVDYSWVISTEN 283
Score = 47.6 bits (113), Expect = 2e-05
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 6 VVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANPNTRDNWNFTPLHEAA 65
+V++++ +G + A+ G LH A + D ++LLL+ A T + T L A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 66 AKGKTDVC 73
K +
Sbjct: 249 KKHHKECE 256
Score = 45.7 bits (108), Expect = 8e-05
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 1079 TPLHEAAA---KGKADIVRLLLQHGADPSKKNRDGATPLDL-VREGDQDVSDLLRGNSAL 1134
LH A + +V ++Q+G K DG T L D LL AL
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 1135 LDAAKKGNLGRVQKLLTADNINCRD 1159
+ + + + C +
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEE 257
Score = 44.5 bits (105), Expect = 2e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 426 VNCRDLDGRHSTPLHFAAGYNRVAVVEYLLAHGADVHSKDNATDKWGFTPLHEAAQKGRT 485
++ + DG T LH+AA YN+ ++ LL A V + + A G T L A +K
Sbjct: 200 LDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEA----GETALDIARKKHHK 253
Query: 486 QLSALL 491
+ LL
Sbjct: 254 ECEELL 259
Score = 42.2 bits (99), Expect = 9e-04
Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 45/180 (25%)
Query: 10 LLASGASI-------HARDDGGLHPLHNACSFGHAD---VVRLLLEADANPNTRDNWNFT 59
A+G A+ L LH A + +V +++ + + + T
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEEL-VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 209
Query: 60 PLHEAAAKGKTDVCIGIYFAEHSSKSNQYVYGIGGGTGCPMHKDRSCYLAHGADPFLKNQ 119
LH AA + D C+ + L A N+
Sbjct: 210 ALHYAALYNQPD-CLKL------------------------------LLKGRALVGTVNE 238
Query: 120 EGQTPLDLTV---AEDVRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPP 176
G+T LD+ ++ LL+ A A P + + V S+ S + S
Sbjct: 239 AGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNS 298
Score = 38.0 bits (88), Expect = 0.020
Identities = 22/122 (18%), Positives = 31/122 (25%), Gaps = 2/122 (1%)
Query: 212 ALGLVPLHNACSYGHFEVTEMLIKAGANVNAMDLWQFTPLHEAASKSRLEVCSLLLSEGA 271
A G LH A Y + ++L+K A V ++ T L A K E LL E A
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQA 262
Query: 272 DPTLHNCHSKSAIDVAPTRELQQRLSNEFKGHCLLEACRQGDPSRVKKFLTSDVVNFKHP 331
+ E S+ L +
Sbjct: 263 QAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKE 322
Query: 332 YT 333
Sbjct: 323 MR 324
Score = 35.6 bits (82), Expect = 0.11
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1 YGRKDVVEYLLASGASIHARDDGGLHPLHNACSFGHADVVRLLLEADANP-----NTRDN 55
Y + D ++ LL A + ++ G L A H + LL +A A + +
Sbjct: 217 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 276
Query: 56 WNFTPLHE 63
W + +
Sbjct: 277 WVISTENL 284
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 52.3 bits (126), Expect = 1e-08
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
L L + F + I+ + L +++ LK +G+++ R + K ++++
Sbjct: 18 GLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 52.2 bits (125), Expect = 2e-08
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCS 865
++ L+ L F T+ A +N L+++G+S G+R ++LK ++ + S
Sbjct: 24 SINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS 76
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP 867
+L L ++F R I L + DLK +GV+ G+ ++L GI++L S
Sbjct: 21 HLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSS 74
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 51.8 bits (124), Expect = 2e-08
Identities = 10/51 (19%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ + + F TL+ + M+ +DL ++G++A +++K+L ++ +
Sbjct: 35 AIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAM 85
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
a.60.1.2
Length = 81
Score = 50.9 bits (122), Expect = 4e-08
Identities = 10/51 (19%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++ + + F +L ++ MN +D++ +G++ G++ K+L I+ +
Sbjct: 16 SIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTM 66
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 50.1 bits (120), Expect = 7e-08
Identities = 10/51 (19%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ + E F + +++++++ EDL ++GV+ G++ K+L ++ +
Sbjct: 24 AIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHM 74
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 50.3 bits (120), Expect = 8e-08
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+L L + L ++ E L++ GV A G R KLLK +
Sbjct: 27 SLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIV 74
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 50.2 bits (120), Expect = 8e-08
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 779 HRTARDDKTQAVRVLLSHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQI-TLDILAEM 837
H + + + S+ L + ++ + F +L+ +A M
Sbjct: 5 HHHSSGRENLYFQGTPDFTTFCSVGEWL------QAIKMERYKDNFTAAGYNSLESVARM 58
Query: 838 NHEDLKQVGVSAYGYRHKLLKGIEKL 863
ED+ +G++ G++ K++ I+ +
Sbjct: 59 TIEDVMSLGITLVGHQKKIMSSIQTM 84
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 50.2 bits (120), Expect = 8e-08
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ + + F +L ++ +M EDL ++G++ G++ K+L I +
Sbjct: 31 AIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSM 81
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 50.4 bits (120), Expect = 1e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+L L + L ++ E L++ GV A G R KLLK +
Sbjct: 58 SLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIV 105
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 49.6 bits (118), Expect = 2e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+L L + L ++ E L++ GV A G R KLLK +
Sbjct: 40 SLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIV 87
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 48.6 bits (116), Expect = 2e-07
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+ + E F + D++++M ED+ +VGV+ G++ K+L I+ +
Sbjct: 20 AIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVM 70
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 48.7 bits (116), Expect = 2e-07
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++ ++ E F ++ + +M ++D+K++GV G++ ++ + L
Sbjct: 21 SIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGL 71
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Length = 82
Score = 47.9 bits (114), Expect = 4e-07
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++ +K + F + T++ + E+ EDL Q+G++ G++ ++L I+
Sbjct: 32 SIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.40A {Homo sapiens}
Length = 86
Score = 47.2 bits (112), Expect = 7e-07
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++ ++ E F ++ + +M ++D+K++GV G++ ++ + L
Sbjct: 30 SIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGL 80
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling,
angiogenesis, apopt ATP-binding, cataract; NMR {Homo
sapiens}
Length = 82
Score = 46.3 bits (110), Expect = 1e-06
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++ ++ E F ++ + +M ++D+K++GV G++ ++ + L
Sbjct: 25 SIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGL 75
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 46.4 bits (110), Expect = 1e-06
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+GL+ E L+ L+++ EDL++ GV ++ LL ++
Sbjct: 35 AIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 46.3 bits (110), Expect = 2e-06
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+LF + IT L + L+++GV+ R + + I K
Sbjct: 20 GEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 68
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 46.4 bits (110), Expect = 2e-06
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864
L FE Q+ L ++ + L+ + V + G++ +L G+E+L
Sbjct: 25 GLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQ 75
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 45.6 bits (108), Expect = 2e-06
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 814 NLGLKHLLELFEREQI-TLDILAE--MNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPS 868
++GL + + M +DL ++G+ G+R ++L+ I+ L S PS
Sbjct: 21 SIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGPS 78
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 50.7 bits (120), Expect = 2e-06
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 27/81 (33%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGR------------------------- 1210
+L+ V LG + +A ++ P G HSV G
Sbjct: 401 GLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGIS 460
Query: 1211 --PSSGGLYFPEYVVYRGEQV 1229
+ L + EY+VY QV
Sbjct: 461 SGVNDTSLLYNEYIVYDIAQV 481
Score = 41.0 bits (95), Expect = 0.002
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 21/127 (16%)
Query: 855 KLLKGIEKLCSSPS----FSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIF 910
LL+G S + + T + + D +E + + ++ T +
Sbjct: 260 SLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNA------- 312
Query: 911 SRYNIIRIQKVQNRKLWERYVHRRAEVADENGGQAHERMLFHGSPFIN--AIVQKGFDER 968
+I I K++ +RY + R+L+HGS N I+ +G
Sbjct: 313 YDLEVIDIFKIEREGECQRY--------KPFKQLHNRRLLWHGSRTTNFAGILSQGLRIA 364
Query: 969 HAIRYVH 975
V
Sbjct: 365 PPEAPVT 371
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 47.0 bits (111), Expect = 4e-06
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+GL ++ +D + ++ EDL+++G++ G++ KL+ + KL
Sbjct: 88 MIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKL 138
Score = 29.3 bits (65), Expect = 4.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 814 NLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLC 864
L+ F L ++ M EDL +GV+ G+R K+ I L
Sbjct: 19 AFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLS 69
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 45.8 bits (108), Expect = 4e-06
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 812 STNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
+LF + IT L + L+++GV+ R + + I K
Sbjct: 37 RHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 88
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 49.3 bits (117), Expect = 5e-06
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 27/81 (33%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRP------------------------ 1211
+L+ V LG + NA + P G HSV G
Sbjct: 256 GLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGIS 315
Query: 1212 ---SSGGLYFPEYVVYRGEQV 1229
+ L + EY+VY QV
Sbjct: 316 TGINDTCLLYNEYIVYDVAQV 336
Score = 41.2 bits (96), Expect = 0.002
Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 869 FSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWE 928
+ + T + + D +E + + ++ T + ++ I +++ +
Sbjct: 133 YEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNA-------YDLKVVEIFRIEREGESQ 185
Query: 929 RYVHRRAEVADENGGQAHERMLFHGSPFIN--AIVQKGFDERHAIRYVHRRA 978
RY + ++L+HGS N I+ +G V
Sbjct: 186 RY--------KPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYM 229
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 44.4 bits (105), Expect = 6e-06
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 814 NLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPS 868
+ L+ TLD L ++ L ++ ++ R +LL E L S PS
Sbjct: 21 RIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic
fragment, structural GEN structural genomics consortium,
SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A*
3ce0_A* 3fhb_A*
Length = 357
Score = 48.2 bits (114), Expect = 9e-06
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 33/87 (37%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPP-GHHSVMGR------------------------ 1210
++ + V LG+ +PP G SV+ R
Sbjct: 262 GYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQ 321
Query: 1211 --------PSSGGLYFPEYVVYRGEQV 1229
SS EY++Y+ Q
Sbjct: 322 GQPVPCPEFSSSTFSQSEYLIYQESQC 348
Score = 42.8 bits (100), Expect = 5e-04
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 869 FSQPGTLLIDLLSDDKEFITVAEEMQATVREHRDNGQSGGIFSRYNIIRIQKVQNRKLWE 928
+ L L S E+ + ++ T HR + I KV +
Sbjct: 144 YQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRC----------PTLQHIWKVNQEGEED 193
Query: 929 RYVHRRAEVADENGGQAHERMLFHGSPFIN--AIVQKGFDERHAIRYVH-RRAEVADE 983
R+ + + ++L+HG+ AI+ G + A E
Sbjct: 194 RF--------QAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASE 243
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 47.4 bits (112), Expect = 2e-05
Identities = 19/85 (22%), Positives = 23/85 (27%), Gaps = 31/85 (36%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPP-GHHSVMGR------------------------ 1210
LL+ V LG+ A A G HS G
Sbjct: 272 GLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPAS 331
Query: 1211 ------PSSGGLYFPEYVVYRGEQV 1229
P L + EY+VY QV
Sbjct: 332 DTGILNPDGYTLNYNEYIVYNPNQV 356
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 43.0 bits (101), Expect = 2e-05
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 813 TNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFSQ 871
+G L+ F + + T + + ++ + L +GV+ G R K+L+ + Q
Sbjct: 23 EEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKRIEQ 82
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 43.4 bits (102), Expect = 2e-05
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 814 NLGLKHLLELFEREQI-TLDILAE--MNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFS 870
++GL + + M +DL ++G+ G+R ++L+ I+ L
Sbjct: 31 SIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIG 90
Query: 871 QPG 873
G
Sbjct: 91 HDG 93
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 39.9 bits (93), Expect = 4e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 814 NLGLKHLLELFEREQI-TLDILAE--MNHEDLKQVGVSAYGYRHKLLKGIEKLCSSPSFS 870
++GL+ + L M +DL+ +G+S +R KLL+ L +
Sbjct: 38 SIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKALG 97
Query: 871 QPGT 874
G
Sbjct: 98 YDGN 101
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 91
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 811 CSTNLGLKHLLELFEREQITLDILAEMNHEDLKQ--VGVSAYGYRHKLLKGIEKLCSSPS 868
+ F E++ +L + E+ + + +R +L +E++ S PS
Sbjct: 30 EQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGPS 89
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 37.2 bits (86), Expect = 0.004
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 830 TLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKLCSSP---SFSQPGT 874
TL + ++H L++ G++ + KLL P + S P +
Sbjct: 49 TLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAMSGPSS 96
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 36.2 bits (83), Expect = 0.007
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 807 VIFSCSTNLGLKH---LLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
VI C + L ++ L + I D+L E+ +D + + K I K+
Sbjct: 17 VITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKM 76
Query: 864 CSS 866
S
Sbjct: 77 RDS 79
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene
regulation, P53 P63 homologue, sterIle alpha motif,
tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2
PDB: 1cok_A
Length = 80
Score = 35.5 bits (81), Expect = 0.008
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 795 SHNADTSIVSLLVIFSCSTNLGLKHLLELFEREQI-TLDILAEMNHEDLKQVGVSAYGYR 853
S++AD S+VS L T LG + +E F + + ++ L + EDL + + YR
Sbjct: 2 SYHADPSLVSFL------TGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPE-QYR 54
Query: 854 HKLLKGIEKLCSSPSFSQPGTLL 876
+ +G++ L +S LL
Sbjct: 55 MTIWRGLQDLKQGHDYSTAQQLL 77
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 35.6 bits (82), Expect = 0.011
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 816 GLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
G + ++ F +++I L + + L G K++ +E +
Sbjct: 31 GCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESI 78
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15,
structural genomics structural genomics consortium, SGC;
HET: 3AB; 2.70A {Homo sapiens}
Length = 277
Score = 36.8 bits (84), Expect = 0.030
Identities = 6/54 (11%), Positives = 15/54 (27%)
Query: 1176 RHLLMCRVTLGKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQV 1229
+ +C V K + + + G + +VV + +
Sbjct: 208 SCVAVCEVIDHPDVKCQTKKKDSKEIDRRRARIKHSEGGDIPPKYFVVTNNQLL 261
Score = 32.5 bits (73), Expect = 0.67
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 971 IRYVHRRAEVADENGGQAHERMLFHGSPFIN--AIVQKGFDERHAYIGGMFGAGK 1023
I Y E G+ FHGS N +I+ G H +FG G
Sbjct: 126 IEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHC-HLNKTSLFGEGT 179
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 36.0 bits (82), Expect = 0.065
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 815 LGLKHLLELFEREQITLDILAEMNHEDL-KQVGVSAYGYRHKLLKGIEKLCSSPSFSQP 872
GL L + I+ L + + +DL K++G+ +R KL ++ L S +
Sbjct: 30 QGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNYG 88
Score = 34.0 bits (77), Expect = 0.24
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 813 TNLGLKHLLELFEREQITLDILAEMNHEDLKQVGVSAYGYRHKLLKGIEKL 863
++GL F+ ++ +L M +DL + V + + + + I+ L
Sbjct: 100 DDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVL 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.52
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 134 RSL--LQDAMAQY-PG-APSCAETASV 156
++L LQ ++ Y AP+ A A++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 30.8 bits (70), Expect = 1.5
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 652 WC-SCCCKMELMFMPRIKDEFKGHCLLEA---CRQGDPSRVKKFLTSDVVNFKHPY 703
W S K + I ++K + + D + K + D ++++
Sbjct: 44 WNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVC 99
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.0 bits (72), Expect = 1.7
Identities = 28/155 (18%), Positives = 38/155 (24%), Gaps = 27/155 (17%)
Query: 61 LHEAAAKGKTDVCIGIYFAEHSSKSNQYVYG--IGGGTGC----------------PMHK 102
L EA A + D C G+ S + G GTG
Sbjct: 1409 LFEAGASAELDDCRGV--------SENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKIT 1460
Query: 103 DRSCYLAHGADPFLKNQEGQTPLDLTVAEDVRSLLQDAMAQYPGAPSCAETASVPPPSQY 162
+ G P+ E + S L D+ + A
Sbjct: 1461 EIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT 1520
Query: 163 SNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQP 197
S + P S G S + P SP P
Sbjct: 1521 SPFG-AYGEAPTSPGFGVSSPGFSPTSPTYSPTSP 1554
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 30.5 bits (68), Expect = 1.8
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 815 LGLKHLLELFEREQI-TLDILAEMNHEDL-KQVGVSAYGYRHKLLKGI 860
+ L + F ++D+L ++ +L + ++ G+R ++L +
Sbjct: 98 IELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASL 145
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 31.0 bits (71), Expect = 2.1
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 10/64 (15%)
Query: 676 LLEACRQGDPSRVKKFL---TSDV--VNFKHPYTGDTPLHCAVTSPYPKRKAIVESLIRK 730
L +AC + + + + T P+ Y K E +
Sbjct: 92 LYDACYE---NNISNIVYASTISAYSDETSLPWNEKELPLPD--LMYGVSKLACEHIGNI 146
Query: 731 GAHL 734
+
Sbjct: 147 YSRK 150
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 30.7 bits (69), Expect = 3.1
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 15/125 (12%)
Query: 74 IGIYFAEHSSKSNQYVYGIGGGTGCPMHKD-RSCYLAHGADPFLKNQEGQTPLDLTVAED 132
+ + FA+ S+ N +Y + H R P++ + +D
Sbjct: 299 LPVMFAKASAIHNPMIYSV-------SHPKFREAISQT--FPWVLTCCQFDDKETEDDKD 349
Query: 133 VRSLLQDAMAQYPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPT 192
+ + + APS A+ A + + PP G P
Sbjct: 350 AETEIPAGESS-DAAPS-ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY---PPQG 404
Query: 193 SPPQP 197
PPQ
Sbjct: 405 YPPQG 409
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 30.5 bits (68), Expect = 4.6
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 1108 RDGATPLDLVREGDQDVSDLLRGNSALLDAAKKGNLGRVQKLLTADNINCRDAQGRNSTP 1167
R A LD REG L + + L + + + + T
Sbjct: 464 RHFAKKLDPRREGGDQRHSF----GPLDYESLQQELALKETVWKKVSPESNEDIST--TV 517
Query: 1168 LHLAA--GEKRH 1177
++ GEK H
Sbjct: 518 VYRMESLGEKSH 529
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 29.8 bits (66), Expect = 7.3
Identities = 7/54 (12%), Positives = 11/54 (20%)
Query: 144 YPGAPSCAETASVPPPSQYSNTSCGDNVSLPPPAQYSGSGGDSVSLPPTSPPQP 197
P +PP + + +PP G P
Sbjct: 18 QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,314,004
Number of extensions: 1230996
Number of successful extensions: 8102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4859
Number of HSP's successfully gapped: 1539
Length of query: 1236
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1131
Effective length of database: 3,770,088
Effective search space: 4263969528
Effective search space used: 4263969528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.7 bits)