Query psy8899
Match_columns 73
No_of_seqs 45 out of 47
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 22:18:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01438 tankyrase_like Tankyra 99.9 1.3E-26 2.9E-31 170.2 7.1 66 1-66 158-223 (223)
2 PF00644 PARP: Poly(ADP-ribose 99.8 1.2E-18 2.6E-23 120.8 5.2 62 2-63 122-206 (206)
3 cd01439 TCCD_inducible_PARP_li 99.6 5.5E-16 1.2E-20 103.0 5.8 54 2-61 60-121 (121)
4 cd01437 parp_like Poly(ADP-rib 99.6 4.1E-15 9E-20 114.0 5.1 61 2-62 257-347 (347)
5 PLN03124 poly [ADP-ribose] pol 99.1 1.3E-10 2.7E-15 96.0 5.7 63 1-63 547-638 (643)
6 PLN03123 poly [ADP-ribose] pol 99.0 2.5E-10 5.3E-15 97.6 5.4 61 2-62 888-976 (981)
7 cd01341 ADP_ribosyl ADP_ribosy 98.7 2.3E-08 4.9E-13 67.2 4.1 54 4-57 79-137 (137)
8 PLN03122 Poly [ADP-ribose] pol 98.3 2.8E-07 6.2E-12 78.0 2.6 62 2-63 713-804 (815)
9 KOG4177|consensus 95.6 0.0033 7.3E-08 55.6 0.1 42 2-49 1102-1143(1143)
10 KOG1037|consensus 94.8 0.0045 9.8E-08 50.5 -1.3 60 1-60 428-518 (531)
11 PF04962 KduI: KduI/IolB famil 32.8 16 0.00035 27.4 0.2 14 23-36 221-234 (261)
12 PF15179 Myc_target_1: Myc tar 31.3 11 0.00024 28.2 -0.8 11 23-33 180-190 (197)
13 PRK03459 rnpA ribonuclease P; 27.8 26 0.00056 23.4 0.5 22 24-45 82-104 (122)
14 cd07985 LPLAT_GPAT Lysophospho 27.0 43 0.00093 25.2 1.6 17 53-69 161-177 (235)
15 PF01221 Dynein_light: Dynein 21.8 41 0.00089 20.7 0.6 11 25-35 51-61 (89)
16 COG1159 Era GTPase [General fu 21.5 39 0.00086 26.5 0.6 14 26-39 6-19 (298)
17 PF00850 Hist_deacetyl: Histon 21.5 47 0.001 24.9 1.0 16 24-41 119-134 (311)
18 PTZ00059 dynein light chain; P 21.4 33 0.00071 21.7 0.1 11 25-35 52-62 (90)
19 KOG3430|consensus 20.3 42 0.00091 22.3 0.4 18 26-43 53-70 (90)
No 1
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=99.93 E-value=1.3e-26 Score=170.18 Aligned_cols=66 Identities=53% Similarity=0.893 Sum_probs=63.6
Q ss_pred CeEEeeeecCCeeeEeecccccCCCCCCceeeeccCCCCCCcceEEEeeCcccceeEEEEeeecCC
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLYLRL 66 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~~~~ 66 (73)
.||||||++|+++.+.+++.+++||+|||||+|.|+.++++|+|||||+++||||+|||+|+++||
T Consensus 158 ~MfLcrVlLGk~~~~~~~~~~~~~P~G~dSv~g~Ps~~~~~~~EfVVyd~~Q~YPeYLI~y~~~~~ 223 (223)
T cd01438 158 QMLFCRVTLGKSFLQFSAMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIVKP 223 (223)
T ss_pred eEEEEEEEecceeeccCCcccCCCCCCCcceEcCCCCCCcccCEEEEECCCcEeeEEEEEEEeeCC
Confidence 389999999999988899999999999999999999999999999999999999999999999998
No 2
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=99.75 E-value=1.2e-18 Score=120.81 Aligned_cols=62 Identities=32% Similarity=0.423 Sum_probs=52.5
Q ss_pred eEEeeeecCCeeeEeecccccCCCCCCceeeecc--------------CC---------CCCCcceEEEeeCcccceeEE
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRP--------------SS---------GGLYFPEYVVYRGEQMCISYL 58 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p--------------~~---------ggLnY~E~VVY~~eqi~P~yL 58 (73)
||||||++|+++..+.+..+..||+|+|||.|.. ++ +.++++|||||+++|+||+||
T Consensus 122 ~llc~V~lG~~~~~~~~~~~~~~~~g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YL 201 (206)
T PF00644_consen 122 MLLCRVALGKPYELKNDNPMTSPPPGYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYL 201 (206)
T ss_dssp EEEEEEEECSEEEESSCCTGSSGCTTESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSGGGEEEEEE
T ss_pred eeEEEEEeccceeeccCcccccccCCcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcccceeeEEE
Confidence 8999999999987765544888999999998753 22 229999999999999999999
Q ss_pred EEeee
Q psy8899 59 AKNLY 63 (73)
Q Consensus 59 I~Y~~ 63 (73)
|+|+.
T Consensus 202 i~y~~ 206 (206)
T PF00644_consen 202 ITYKF 206 (206)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99973
No 3
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.63 E-value=5.5e-16 Score=103.04 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=42.5
Q ss_pred eEEeeeecCCeeeEeecccccCCC--------CCCceeeeccCCCCCCcceEEEeeCcccceeEEEEe
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAP--------PGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKN 61 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pP--------pGyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y 61 (73)
||||||++|+.. +-+ ..+..|| .+||||++.. .|..|+|||++.||||||||+|
T Consensus 60 mfL~rVl~G~~~-~~~-~~~~~pP~~~~~~~~~~yDS~vd~~----~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 60 MFLARVLTGDYT-QGH-PGYRRPPLKPSGVELDRYDSCVDNV----SNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred EEEEEEEeccee-cCC-CcccCCCCccCCCCCCCccceeCCC----CCCCEEEEEeCCccceeEEEEC
Confidence 899999999953 221 2333454 6799999875 3458999999999999999997
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.55 E-value=4.1e-15 Score=114.00 Aligned_cols=61 Identities=34% Similarity=0.436 Sum_probs=51.3
Q ss_pred eEEeeeecCCeeeEeecccccC-CCCCCceeeec------cC-----------------------CCCCCcceEEEeeCc
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAH-APPGHHSVMGR------PS-----------------------SGGLYFPEYVVYRGE 51 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~-pPpGyhSViG~------p~-----------------------~ggLnY~E~VVY~~e 51 (73)
||||||++|+++..+++...+. ||.|||||.|. |+ ++.|.|+|||||+.+
T Consensus 257 mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~~ 336 (347)
T cd01437 257 LLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYDVA 336 (347)
T ss_pred EEEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeechh
Confidence 7999999999998776665554 99999999876 11 346999999999999
Q ss_pred ccceeEEEEee
Q psy8899 52 QMCISYLAKNL 62 (73)
Q Consensus 52 qi~P~yLI~Y~ 62 (73)
||++.|||..+
T Consensus 337 Qir~rYLv~vk 347 (347)
T cd01437 337 QVRLKYLLEVK 347 (347)
T ss_pred HEEEEEEEEeC
Confidence 99999999753
No 5
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.10 E-value=1.3e-10 Score=96.03 Aligned_cols=63 Identities=27% Similarity=0.440 Sum_probs=50.0
Q ss_pred CeEEeeeecCCeeeEeecccc-cCCCCCCceeeec----c------------------------CCCCCCcceEEEeeCc
Q psy8899 1 MFVLGTANHSKSFLQFNAIKM-AHAPPGHHSVMGR----P------------------------SSGGLYFPEYVVYRGE 51 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~-~~pPpGyhSViG~----p------------------------~~ggLnY~E~VVY~~e 51 (73)
.||||.|++|++...+++.-+ ..+|+|+|||.|. | ..+.|.|+|||||+..
T Consensus 547 ~llLceVaLG~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~~ 626 (643)
T PLN03124 547 VLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNVD 626 (643)
T ss_pred EEEEEEEecCCcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEechh
Confidence 389999999998876666554 5689999999542 1 1246899999999999
Q ss_pred ccceeEEEEeee
Q psy8899 52 QMCISYLAKNLY 63 (73)
Q Consensus 52 qi~P~yLI~Y~~ 63 (73)
||+..||+.-+.
T Consensus 627 Qvr~rYLv~vkf 638 (643)
T PLN03124 627 QIRMRYVLQVKF 638 (643)
T ss_pred HeEEEEEEEEEE
Confidence 999999986543
No 6
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.04 E-value=2.5e-10 Score=97.58 Aligned_cols=61 Identities=28% Similarity=0.462 Sum_probs=51.8
Q ss_pred eEEeeeecCCeeeEeecccccCCCCCCceeeec----cC------------------------CCCCCcceEEEeeCccc
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGR----PS------------------------SGGLYFPEYVVYRGEQM 53 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~----p~------------------------~ggLnY~E~VVY~~eqi 53 (73)
||||.|+||+++..+++..++.||.|||||.|. |. .+.|.|.|||||+..|+
T Consensus 888 llLceVaLG~~~e~~~~~~~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~~~L~yNEYIVYd~~Qv 967 (981)
T PLN03123 888 MLLSEVALGEIYELKKAKYMDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKASELMYNEYIVYNTAQV 967 (981)
T ss_pred EEEEEEecCChhhhccccccccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCccCcccCCccccCceEEechhHE
Confidence 899999999998777777788999999999554 21 23589999999999999
Q ss_pred ceeEEEEee
Q psy8899 54 CISYLAKNL 62 (73)
Q Consensus 54 ~P~yLI~Y~ 62 (73)
+-.||+.-+
T Consensus 968 r~rYLv~vk 976 (981)
T PLN03123 968 KLQFLLKVR 976 (981)
T ss_pred EEEEEEEEE
Confidence 999999654
No 7
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=98.69 E-value=2.3e-08 Score=67.22 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=39.0
Q ss_pred EeeeecCCeeeEeec-ccccCCCCCCceeeeccC---CCCCCcceEEEeeC-cccceeE
Q psy8899 4 LGTANHSKSFLQFNA-IKMAHAPPGHHSVMGRPS---SGGLYFPEYVVYRG-EQMCISY 57 (73)
Q Consensus 4 lcrV~vGr~~~~~~~-~~~~~pPpGyhSViG~p~---~ggLnY~E~VVY~~-eqi~P~y 57 (73)
+|.|..|+....+.. ..+..+|+|+|||.|..+ ...+++.|+|||+. +|++|+|
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~~Qv~~~Y 137 (137)
T cd01341 79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPYSQVSIRY 137 (137)
T ss_pred EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecchhhceecC
Confidence 344444444322222 345567999999999975 46799999999999 9999997
No 8
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.33 E-value=2.8e-07 Score=77.99 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=47.0
Q ss_pred eEEeeeecCCe-eeEeecc-cccCCCCCCcee--eec--cC------------------------CCCCCcceEEEeeCc
Q psy8899 2 FVLGTANHSKS-FLQFNAI-KMAHAPPGHHSV--MGR--PS------------------------SGGLYFPEYVVYRGE 51 (73)
Q Consensus 2 ~llcrV~vGr~-~~~~~~~-~~~~pPpGyhSV--iG~--p~------------------------~ggLnY~E~VVY~~e 51 (73)
||||-|+||++ ...+++. .....|.|.||+ +|+ |. .+.|.|.||||||-.
T Consensus 713 LlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDva 792 (815)
T PLN03122 713 LVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDPK 792 (815)
T ss_pred EEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEchh
Confidence 79999999998 4444443 455678899998 333 31 235999999999999
Q ss_pred ccceeEEEEeee
Q psy8899 52 QMCISYLAKNLY 63 (73)
Q Consensus 52 qi~P~yLI~Y~~ 63 (73)
||+-.||+.=+.
T Consensus 793 QvrirYL~~vkf 804 (815)
T PLN03122 793 QVSIRFLVGVKY 804 (815)
T ss_pred HEEEEEEEEEEe
Confidence 999999986443
No 9
>KOG4177|consensus
Probab=95.61 E-value=0.0033 Score=55.63 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=37.0
Q ss_pred eEEeeeecCCeeeEeecccccCCCCCCceeeeccCCCCCCcceEEEee
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYR 49 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p~~ggLnY~E~VVY~ 49 (73)
+++|+|.+++++.+++.+++ ++ |+||++++|+.+ ++|.++|+
T Consensus 1102 l~~~~~~~~~~~l~~~~~~~-~~--g~~~~~~~~~~~---~~~~~~~~ 1143 (1143)
T KOG4177|consen 1102 LSFCFVPFLENRLAFSVKKR-HA--GRISFMAEPKSK---IPQHVICH 1143 (1143)
T ss_pred eEEeeehhhhhhhHHHHHhh-cC--Ccceeecccccc---CCccccCC
Confidence 57899999999999999988 44 999999999886 88888874
No 10
>KOG1037|consensus
Probab=94.84 E-value=0.0045 Score=50.49 Aligned_cols=60 Identities=32% Similarity=0.479 Sum_probs=46.3
Q ss_pred CeEEeeeecCCeeeEeec-ccccCCCCCCceee-----------------------ec------c-CCCCCCcceEEEee
Q psy8899 1 MFVLGTANHSKSFLQFNA-IKMAHAPPGHHSVM-----------------------GR------P-SSGGLYFPEYVVYR 49 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~-~~~~~pPpGyhSVi-----------------------G~------p-~~ggLnY~E~VVY~ 49 (73)
++|+|-|++|+.....++ ..++..|+|+|||. |. + +.+.+.|+|++||+
T Consensus 428 ~ll~~~~alg~~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~e~~v~~ 507 (531)
T KOG1037|consen 428 HLLLCDVALGKEQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPLGKIKLTEEPHKDSLLEYNEYIVYN 507 (531)
T ss_pred hhhhhhhhccchhhhhcCCcccccCCCCCcchhhhcccCCCchhhcccccccccccccccccccccchhhhhhhhhhhcc
Confidence 478999999999876544 45666899999974 21 1 22357899999999
Q ss_pred CcccceeEEEE
Q psy8899 50 GEQMCISYLAK 60 (73)
Q Consensus 50 ~eqi~P~yLI~ 60 (73)
.+|+-=.|++.
T Consensus 508 ~~q~~~~~~~k 518 (531)
T KOG1037|consen 508 VEQVQIRYLVK 518 (531)
T ss_pred HhhhceeeeeE
Confidence 99998888764
No 11
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=32.85 E-value=16 Score=27.36 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=10.7
Q ss_pred CCCCCCceeeeccC
Q psy8899 23 HAPPGHHSVMGRPS 36 (73)
Q Consensus 23 ~pPpGyhSViG~p~ 36 (73)
--|+||||++.-|+
T Consensus 221 ~iP~gyHp~~aapG 234 (261)
T PF04962_consen 221 LIPSGYHPVVAAPG 234 (261)
T ss_dssp EESTTB-SEEEEEE
T ss_pred EeCCCCCCcCcCCC
Confidence 36999999988874
No 12
>PF15179 Myc_target_1: Myc target protein 1
Probab=31.32 E-value=11 Score=28.18 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=9.3
Q ss_pred CCCCCCceeee
Q psy8899 23 HAPPGHHSVMG 33 (73)
Q Consensus 23 ~pPpGyhSViG 33 (73)
.|||.|+|||-
T Consensus 180 tPPPAYeSIIk 190 (197)
T PF15179_consen 180 TPPPAYESIIK 190 (197)
T ss_pred CCCchHHHHHH
Confidence 48999999973
No 13
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=27.77 E-value=26 Score=23.39 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.5
Q ss_pred CCCCCcee-eeccCCCCCCcceE
Q psy8899 24 APPGHHSV-MGRPSSGGLYFPEY 45 (73)
Q Consensus 24 pPpGyhSV-iG~p~~ggLnY~E~ 45 (73)
-|+|+|=| +++|+....+|.|+
T Consensus 82 l~~g~D~Viiar~~~~~~~~~~l 104 (122)
T PRK03459 82 VPETHHVVIRALPGAATASSAEL 104 (122)
T ss_pred cCCCcEEEEEECcccccCCHHHH
Confidence 57899999 68888777888764
No 14
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=27.00 E-value=43 Score=25.20 Aligned_cols=17 Identities=12% Similarity=-0.099 Sum_probs=15.3
Q ss_pred cceeEEEEeeecCCccc
Q psy8899 53 MCISYLAKNLYLRLDKA 69 (73)
Q Consensus 53 i~P~yLI~Y~~~~~~~~ 69 (73)
+||-+|.+|++++|..+
T Consensus 161 i~Plai~~ydi~Ppp~~ 177 (235)
T cd07985 161 LYPMALLTYDIMPPPKQ 177 (235)
T ss_pred EEeeEEEeecccCCCcc
Confidence 89999999999999654
No 15
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=21.83 E-value=41 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.746 Sum_probs=8.3
Q ss_pred CCCCceeeecc
Q psy8899 25 PPGHHSVMGRP 35 (73)
Q Consensus 25 PpGyhSViG~p 35 (73)
.++||+|+|+-
T Consensus 51 G~~Wh~IVG~~ 61 (89)
T PF01221_consen 51 GPTWHCIVGKS 61 (89)
T ss_dssp SS-EEEEEESE
T ss_pred CCceEEEECCc
Confidence 46899999984
No 16
>COG1159 Era GTPase [General function prediction only]
Probab=21.54 E-value=39 Score=26.47 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=11.6
Q ss_pred CCCceeeeccCCCC
Q psy8899 26 PGHHSVMGRPSSGG 39 (73)
Q Consensus 26 pGyhSViG~p~~gg 39 (73)
.||=+++|+|++|-
T Consensus 6 sGfVaIiGrPNvGK 19 (298)
T COG1159 6 SGFVAIIGRPNVGK 19 (298)
T ss_pred EEEEEEEcCCCCcH
Confidence 47888899999975
No 17
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=21.54 E-value=47 Score=24.87 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=7.5
Q ss_pred CCCCCceeeeccCCCCCC
Q psy8899 24 APPGHHSVMGRPSSGGLY 41 (73)
Q Consensus 24 pPpGyhSViG~p~~ggLn 41 (73)
.|||||.--.+ ++|..
T Consensus 119 rppgHHA~~~~--a~GFC 134 (311)
T PF00850_consen 119 RPPGHHAERDR--AMGFC 134 (311)
T ss_dssp SS--TT-BTTB--BBTTB
T ss_pred CccccccCcCc--Cccee
Confidence 89999994333 34544
No 18
>PTZ00059 dynein light chain; Provisional
Probab=21.39 E-value=33 Score=21.69 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.2
Q ss_pred CCCCceeeecc
Q psy8899 25 PPGHHSVMGRP 35 (73)
Q Consensus 25 PpGyhSViG~p 35 (73)
-|.||+|+|+-
T Consensus 52 g~~WhciVG~~ 62 (90)
T PTZ00059 52 NPTWHCIVGRN 62 (90)
T ss_pred CCCCEEEEecC
Confidence 46899999994
No 19
>KOG3430|consensus
Probab=20.32 E-value=42 Score=22.33 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=12.0
Q ss_pred CCCceeeeccCCCCCCcc
Q psy8899 26 PGHHSVMGRPSSGGLYFP 43 (73)
Q Consensus 26 pGyhSViG~p~~ggLnY~ 43 (73)
+|||+|+|+-=++-++|.
T Consensus 53 ~~WhcivG~~FGs~vThe 70 (90)
T KOG3430|consen 53 PTWHCIVGRNFGSYVTHE 70 (90)
T ss_pred CccEEEEcCCcceEEEee
Confidence 689999999433334443
Done!