Query psy8899
Match_columns 73
No_of_seqs 45 out of 47
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:18:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u9h_A Tankyrase-2; protein-li 99.9 1.8E-25 6.2E-30 161.5 8.1 66 2-67 174-239 (240)
2 2x5y_A Zinc finger CCCH-type a 99.7 1.8E-18 6.3E-23 117.9 6.6 57 1-63 116-172 (173)
3 1efy_A Poly (ADP-ribose) polym 99.7 2E-18 6.8E-23 130.0 7.4 62 2-63 258-346 (350)
4 3hkv_A PARP-10, poly [ADP-ribo 99.7 8.9E-18 3E-22 120.2 7.1 62 1-68 135-204 (217)
5 3smj_A Poly [ADP-ribose] polym 99.7 1.2E-17 4E-22 116.5 6.7 56 1-62 129-192 (193)
6 2pqf_A Poly [ADP-ribose] polym 99.7 2.1E-17 7.2E-22 114.7 6.5 59 1-65 130-195 (198)
7 4dqy_C Poly [ADP-ribose] polym 99.7 2.5E-17 8.5E-22 129.9 7.3 63 1-63 402-491 (506)
8 3kjd_A Poly [ADP-ribose] polym 99.7 2.4E-17 8E-22 126.2 6.0 63 1-63 273-366 (368)
9 3blj_A Poly(ADP-ribose) polyme 99.7 5.2E-17 1.8E-21 114.9 6.7 56 1-62 157-220 (221)
10 3c4h_A Poly(ADP-ribose) polyme 99.7 6.9E-17 2.4E-21 121.7 7.1 62 1-62 263-357 (357)
11 3rjs_A Dynein light chain moto 47.4 9.9 0.00034 23.1 1.8 20 25-44 51-70 (89)
12 2dig_A Lamin-B receptor; tudor 45.9 16 0.00055 22.4 2.6 33 29-63 17-50 (68)
13 4f0d_A PARP-16, poly [ADP-ribo 42.8 27 0.00093 25.7 3.9 30 38-67 246-275 (277)
14 2l8d_A Lamin-B receptor; DNA b 38.9 28 0.00097 21.1 2.9 34 29-63 14-47 (66)
15 3pvl_B Usher syndrome type-1G 37.0 15 0.0005 23.8 1.5 23 24-52 5-27 (96)
16 3iev_A GTP-binding protein ERA 35.2 8.2 0.00028 27.0 0.1 18 22-39 6-23 (308)
17 1yo3_A Dynein light chain 1; s 25.0 18 0.00062 22.7 0.4 20 25-44 64-83 (102)
18 3pyi_B Spindle assembly abnorm 24.5 17 0.00057 25.5 0.1 15 21-35 116-132 (170)
19 4ds1_A Dynein light chain 1, c 21.5 28 0.00096 21.5 0.7 10 25-34 59-68 (97)
No 1
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=99.92 E-value=1.8e-25 Score=161.52 Aligned_cols=66 Identities=53% Similarity=0.891 Sum_probs=61.7
Q ss_pred eEEeeeecCCeeeEeecccccCCCCCCceeeeccCCCCCCcceEEEeeCcccceeEEEEeeecCCc
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLYLRLD 67 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~~~~~ 67 (73)
||||||++|+.++.++++.++.||+|||||+|.|+.++|+|+|+|||+++||+|+|||+|++.+|+
T Consensus 174 mlLc~V~lG~~~~~~~~~~~~~pP~gyDSvvg~~~~~~l~~~E~VVy~~~qi~P~YlI~y~~~~~~ 239 (240)
T 3u9h_A 174 LLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 239 (240)
T ss_dssp EEEEEEECCSEEEEEECC--CCCCTTCSEEEEEESSCTTCCCEEEESCGGGEEEEEEEEEEECCCC
T ss_pred EEEEEEecCceEeecCcccccCCCCCCCceecCCCCCCCCCCEEEEEcccceeEEEEEEEEccCCC
Confidence 899999999999988888888999999999999998889999999999999999999999999997
No 2
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=117.93 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=48.3
Q ss_pred CeEEeeeecCCeeeEeecccccCCCCCCceeeeccCCCCCCcceEEEeeCcccceeEEEEeee
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLY 63 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~ 63 (73)
.||||||++|+ + ...+..+..||+|||||+|.. .|++|+|||+++||+|+|||+|+.
T Consensus 116 ~m~lc~V~~G~-~-~~~~~~~~~pp~~ydSv~~~~----~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 116 VMFVAQVLVGK-F-IEGNITYTSPPPQFDSCVDTR----SNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp EEEEEEECCCS-E-EECCTTCSSCCTTCCEEESCS----SSCCEEEECCGGGEEEEEEEEEEE
T ss_pred EEEEEEEecCc-c-ccCCcccCCCCCCCCceECCC----CCCCEEEEEeCCeEeEEEEEEEeC
Confidence 38999999999 3 233446788999999999874 478999999999999999999974
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=99.75 E-value=2e-18 Score=130.04 Aligned_cols=62 Identities=32% Similarity=0.539 Sum_probs=53.9
Q ss_pred eEEeeeecCCeeeEeecccccCCCCCCceeeec----c-----------------------CCCCCCcceEEEeeCcccc
Q psy8899 2 FVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGR----P-----------------------SSGGLYFPEYVVYRGEQMC 54 (73)
Q Consensus 2 ~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~----p-----------------------~~ggLnY~E~VVY~~eqi~ 54 (73)
||||||++|+.+..+++..+..||+|||||.|. | ..+.|+|+|||||+.+||+
T Consensus 258 m~Lc~V~lG~~~~~~~~~~~~~~p~g~~Sv~g~g~~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~Qi~ 337 (350)
T 1efy_A 258 ILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVN 337 (350)
T ss_dssp EEEEEEECCSEEEESSCCCCCSCCTTCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGGGEE
T ss_pred EEEEEEecCCceeccCcchhhhcCCCCcceeeccccCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEchhhee
Confidence 799999999999877666677899999999876 2 1256999999999999999
Q ss_pred eeEEEEeee
Q psy8899 55 ISYLAKNLY 63 (73)
Q Consensus 55 P~yLI~Y~~ 63 (73)
|+|||.|+.
T Consensus 338 p~YLI~~~~ 346 (350)
T 1efy_A 338 LKYLLKLKF 346 (350)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999986
No 4
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=99.72 E-value=8.9e-18 Score=120.17 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=49.3
Q ss_pred CeEEeeeecCCeeeEeecccccCCCC--------CCceeeeccCCCCCCcceEEEeeCcccceeEEEEeeecCCcc
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPP--------GHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLYLRLDK 68 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPp--------GyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~~~~~~ 68 (73)
.||||||++|+..+ ....+..||+ +||||+|.+ .|++|+|||+++||||+|||+|+..+..+
T Consensus 135 ~m~lcrVl~G~~~~--g~~~~~~PP~~~~~~~~~~yDSvvd~~----~np~~~VVf~~~qiyPeYLI~y~~~~~~~ 204 (217)
T 3hkv_A 135 AVFVARVLTGDYGQ--GRRGLRAPPLRGPGHVLLRYDSAMDCI----CQPSIFVIFHDTQALPTHLITCEHVPRAS 204 (217)
T ss_dssp EEEEEEEECCSEEE--CCTTCSSSCBCCTTCSSSBCSEEESCS----SSCCEEEECCTTSEEEEEEEEEEECC---
T ss_pred EEEEEEEEcccccc--CCCccCCCCCCccCCCCCceeEEECCC----CCCCEEEEEcCCcCceeEEEEEecCCCCC
Confidence 38999999999542 3345666776 499999987 47899999999999999999999886544
No 5
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=99.71 E-value=1.2e-17 Score=116.48 Aligned_cols=56 Identities=11% Similarity=-0.046 Sum_probs=46.6
Q ss_pred CeEEeeeecCCeeeEeecccccCCCC--------CCceeeeccCCCCCCcceEEEeeCcccceeEEEEee
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPP--------GHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNL 62 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPp--------GyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~ 62 (73)
.||||||++|+..+ ....+..||+ |||||+|.++ |.+|+|||+++||||+|||+|+
T Consensus 129 ~mllcrV~~G~~~~--g~~~~~~pP~~~~~~~~~~yDSvv~~~~----~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 129 HVYYVRVLTGIYTH--GNHSLIVPPSKNPQNPTDLYDTVTDNVH----HPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp EEEEEEEECCSEEE--CCSSCCSCCBSCTTSTTCBCSEEESCSS----SCSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEeccccc--CCCccCCCCCccCCCCCCCccceeCCCC----CCCEEEEEeCCceeeEEEEEEe
Confidence 38999999999763 3345666665 5999999875 5699999999999999999997
No 6
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=114.68 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=48.5
Q ss_pred CeEEeeeecCCeeeEeecccccCCCCC-------CceeeeccCCCCCCcceEEEeeCcccceeEEEEeeecC
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPPG-------HHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLYLR 65 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPpG-------yhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~~~ 65 (73)
.||||||++|+... ....+..|||+ ||||++.+ .+++|+|||+++||||+|||+|+...
T Consensus 130 ~m~lcrV~~G~~~~--~~~~~~~pp~~~~~~~~~yDSvv~~~----~~~~e~VVy~~~qiyP~YlI~y~~~~ 195 (198)
T 2pqf_A 130 TMFLARVLVGEFVR--GNASFVRPPAKEGWSNAFYDSCVNSV----SDPSIFVIFEKHQVYPEYVIQYTTSS 195 (198)
T ss_dssp EEEEEEEECCSEEE--CCTTCSSCCBCSCC--CBCSEEESCS----SSCCEEEESCGGGEEEEEEEEEESCC
T ss_pred EEEEEEEecCCccc--CCccccCCCCCCCCCCCCcccCcCCC----CCCCEEEEECCCcEeeEEEEEEEcCC
Confidence 38999999999862 23345678776 99999875 36799999999999999999998754
No 7
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=99.69 E-value=2.5e-17 Score=129.88 Aligned_cols=63 Identities=29% Similarity=0.488 Sum_probs=55.5
Q ss_pred CeEEeeeecCCeeeEeecccccCCCCCCceeeeccC---------------------------CCCCCcceEEEeeCccc
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPS---------------------------SGGLYFPEYVVYRGEQM 53 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPpGyhSViG~p~---------------------------~ggLnY~E~VVY~~eqi 53 (73)
.||||||++|+++..+++..++.||+|||||.|..+ .+.|+|+|||||+.+||
T Consensus 402 ~mll~~V~lG~~~~~~~~~~~~~~p~G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~~~~~~~~l~ynEyiVYd~~Qi 481 (506)
T 4dqy_C 402 LILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQV 481 (506)
T ss_dssp EEEEEEEECCSEEEESSCCCCSSCCTTCCEEEECCSEEECGGGCEESSSCEECCCCEEECSCCCCSCSBCEEEESSGGGE
T ss_pred EEEEEEEecCCceecccchhhhccCCCCceEEeCCcCcCCcccccccCCeEEECCCcccCCCCCCcccccceEEEchHHe
Confidence 389999999999988877778899999999988821 35699999999999999
Q ss_pred ceeEEEEeee
Q psy8899 54 CISYLAKNLY 63 (73)
Q Consensus 54 ~P~yLI~Y~~ 63 (73)
+|.|||..+.
T Consensus 482 r~rYLv~v~~ 491 (506)
T 4dqy_C 482 NLKYLLKLKF 491 (506)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEEEE
Confidence 9999998775
No 8
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=99.69 E-value=2.4e-17 Score=126.17 Aligned_cols=63 Identities=30% Similarity=0.472 Sum_probs=53.6
Q ss_pred CeEEeeeecCCeeeEeecc-cccCCCCCCceeeec----cC-------------------------CC-CCCcceEEEee
Q psy8899 1 MFVLGTANHSKSFLQFNAI-KMAHAPPGHHSVMGR----PS-------------------------SG-GLYFPEYVVYR 49 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~-~~~~pPpGyhSViG~----p~-------------------------~g-gLnY~E~VVY~ 49 (73)
.||||||++|+++..+++. .++.||+|||||.|. |+ .| .|+|+|||||+
T Consensus 273 ~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~dgv~vP~G~~~~~~~~~~~~~~L~ynEyIVYd 352 (368)
T 3kjd_A 273 LLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYN 352 (368)
T ss_dssp EEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEETTEEECCSCEEECCCCCSSSCCEEECEEEESS
T ss_pred EEEEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCcccccccCCEEeeCCCcccCCCCCCcCccccCCceEEec
Confidence 3899999999999877654 578899999999988 32 12 59999999999
Q ss_pred CcccceeEEEEeee
Q psy8899 50 GEQMCISYLAKNLY 63 (73)
Q Consensus 50 ~eqi~P~yLI~Y~~ 63 (73)
.+||+|.|||..+.
T Consensus 353 ~~Qir~rYLv~v~~ 366 (368)
T 3kjd_A 353 PNQVRMRYLLKVQF 366 (368)
T ss_dssp GGGEEEEEEEEEEE
T ss_pred hhHeeEEEEEEEEe
Confidence 99999999998764
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=99.68 E-value=5.2e-17 Score=114.93 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=45.2
Q ss_pred CeEEeeeecCCeeeEeecccccCCCC--------CCceeeeccCCCCCCcceEEEeeCcccceeEEEEee
Q psy8899 1 MFVLGTANHSKSFLQFNAIKMAHAPP--------GHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNL 62 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~~~~pPp--------GyhSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~ 62 (73)
.||||||++|+..+.. ..+..||+ |||||+|.+ .+++|+|||+++||||+|||+|+
T Consensus 157 ~mllcrV~~G~~~~g~--~~~~~pp~~~~~~~~~~yDSvv~~~----~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 157 HMYVVRVLTGVFTKGR--AGLVTPPPKNPHNPTDLFDSVTNNT----RSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp EEEEEEEECCSEEECC--TTCSSCCBSSTTSTTSBCSEEESCS----SSCSEEEECSTTSEEEEEEEEEE
T ss_pred EEEEEEEEeCCccCCC--hhccCCCcccCCCCCCCCCccccCC----CCCCEEEEEcCCeEeeeEEEEEE
Confidence 3899999999986433 23334443 899999986 36899999999999999999996
No 10
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=99.67 E-value=6.9e-17 Score=121.71 Aligned_cols=62 Identities=26% Similarity=0.449 Sum_probs=50.9
Q ss_pred CeEEeeeecCCeeeEeeccc-ccCCCCCCceeeec----c----------C------------------CCCCCcceEEE
Q psy8899 1 MFVLGTANHSKSFLQFNAIK-MAHAPPGHHSVMGR----P----------S------------------SGGLYFPEYVV 47 (73)
Q Consensus 1 ~~llcrV~vGr~~~~~~~~~-~~~pPpGyhSViG~----p----------~------------------~ggLnY~E~VV 47 (73)
.||||||++|+.+..+.+.. +..||+|||||.|. | . .+.|+|+||||
T Consensus 263 ~mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G~~v~~~~~~~~~l~~nEyVV 342 (357)
T 3c4h_A 263 YMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLI 342 (357)
T ss_dssp EEEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTEEEEECCSCEEECGGGTTCSCSBCEEEE
T ss_pred EEEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCCeEEecCCCcccCCCCCCCccCCCEEEE
Confidence 37999999999987665544 55689999999775 1 1 13589999999
Q ss_pred eeCcccceeEEEEee
Q psy8899 48 YRGEQMCISYLAKNL 62 (73)
Q Consensus 48 Y~~eqi~P~yLI~Y~ 62 (73)
|+.+||+|+|||+|+
T Consensus 343 Yd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 343 YQESQCRLRYLLEVH 357 (357)
T ss_dssp SSGGGEEEEEEEEEC
T ss_pred EchhheeEEEEEEEC
Confidence 999999999999985
No 11
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=47.38 E-value=9.9 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=14.2
Q ss_pred CCCCceeeeccCCCCCCcce
Q psy8899 25 PPGHHSVMGRPSSGGLYFPE 44 (73)
Q Consensus 25 PpGyhSViG~p~~ggLnY~E 44 (73)
-|.||+|+|+-=+.-++|++
T Consensus 51 g~~WhciVG~~Fgs~vthe~ 70 (89)
T 3rjs_A 51 NPTWHCVVGRNFGSYVTHET 70 (89)
T ss_dssp CSCCEEEEESSCCCCCCEEE
T ss_pred CCCCEEEEecCeeEEEEEcC
Confidence 36899999996444477653
No 12
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=45.86 E-value=16 Score=22.37 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=23.7
Q ss_pred ceeeec-cCCCCCCcceEEEeeCcccceeEEEEeee
Q psy8899 29 HSVMGR-PSSGGLYFPEYVVYRGEQMCISYLAKNLY 63 (73)
Q Consensus 29 hSViG~-p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~ 63 (73)
+.|+|+ | +..+.|+--|+= -+.--|.|++.|+.
T Consensus 17 d~VmaRW~-Gd~~yYparItS-its~~~~Y~VkfKd 50 (68)
T 2dig_A 17 EVVRGRWP-GSSLYYEVEILS-HDSTSQLYTVKYKD 50 (68)
T ss_dssp CEEEEECT-TTCCEEEEEEEE-EETTTTEEEEECTT
T ss_pred CEEEEEcc-CCccceEEEEEE-eccCCceEEEEecC
Confidence 678888 6 445666655543 33888999999987
No 13
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=42.77 E-value=27 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=20.3
Q ss_pred CCCCcceEEEeeCcccceeEEEEeeecCCc
Q psy8899 38 GGLYFPEYVVYRGEQMCISYLAKNLYLRLD 67 (73)
Q Consensus 38 ggLnY~E~VVY~~eqi~P~yLI~Y~~~~~~ 67 (73)
|.+.=+.+||=++|.+.--||.+|....|.
T Consensus 246 ~~~p~~y~vV~n~~~v~~rYllvy~~~~~~ 275 (277)
T 4f0d_A 246 GDIPPKYFVVTNNQLLRVKYLLVYSQKPPK 275 (277)
T ss_dssp -----CCEEECCGGGEEEEEEEEEEC----
T ss_pred CCCCCCEEEEEccceEEEEEEEEEccCccC
Confidence 446668899999999999999999887764
No 14
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=38.92 E-value=28 Score=21.14 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=24.6
Q ss_pred ceeeeccCCCCCCcceEEEeeCcccceeEEEEeee
Q psy8899 29 HSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNLY 63 (73)
Q Consensus 29 hSViG~p~~ggLnY~E~VVY~~eqi~P~yLI~Y~~ 63 (73)
+.|+|+=++..+.|+=-|+= -+.--|.|++.|+.
T Consensus 14 d~VmaRW~Gd~~yYparI~S-i~s~~~~Y~V~fKd 47 (66)
T 2l8d_A 14 EVVMGRWPGSVLYYEVQVTS-YDDASHLYTVKYKD 47 (66)
T ss_dssp CEEEEECTTSSCEEEEEEEE-EETTTTEEEEEETT
T ss_pred CEEEEEcCCCccceEEEEEE-eccCCceEEEEecC
Confidence 67899864445667655543 33888999999986
No 15
>3pvl_B Usher syndrome type-1G protein; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Homo sapiens}
Probab=36.96 E-value=15 Score=23.82 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=17.9
Q ss_pred CCCCCceeeeccCCCCCCcceEEEeeCcc
Q psy8899 24 APPGHHSVMGRPSSGGLYFPEYVVYRGEQ 52 (73)
Q Consensus 24 pPpGyhSViG~p~~ggLnY~E~VVY~~eq 52 (73)
...||+|+.-+|+.|+ +|||+..
T Consensus 5 ~d~gh~SIFnRPGLG~------mVFrRN~ 27 (96)
T 3pvl_B 5 TDSGHDSLFTRPGLGT------MVFRRNY 27 (96)
T ss_pred ccccchhhccCCCCcc------eeeecch
Confidence 4578999999999987 5666543
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=35.25 E-value=8.2 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=14.2
Q ss_pred cCCCCCCceeeeccCCCC
Q psy8899 22 AHAPPGHHSVMGRPSSGG 39 (73)
Q Consensus 22 ~~pPpGyhSViG~p~~gg 39 (73)
..+|+||=+++|.|++|-
T Consensus 6 ~~~~~g~v~ivG~~nvGK 23 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGK 23 (308)
T ss_dssp -CCEEEEEEEECSTTSSH
T ss_pred CCCCCCEEEEECCCCCcH
Confidence 456779999999999873
No 17
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=24.98 E-value=18 Score=22.69 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCCceeeeccCCCCCCcce
Q psy8899 25 PPGHHSVMGRPSSGGLYFPE 44 (73)
Q Consensus 25 PpGyhSViG~p~~ggLnY~E 44 (73)
-|.||+|+|+.=+.-++|.+
T Consensus 64 G~~WHcIVG~~FGs~vThe~ 83 (102)
T 1yo3_A 64 DPTWHCVVGRNFGSYVTHET 83 (102)
T ss_dssp CSCEEEEESSSCCCEEESCC
T ss_pred CCCCEEEEccCeeEEEEEeC
Confidence 36799999974333366654
No 18
>3pyi_B Spindle assembly abnormal protein 6; beta-sandwich, dimer, alpha-beta protein, structural protein cytoplasmic, centriolar; HET: PG4 MES; 2.10A {Caenorhabditis elegans}
Probab=24.49 E-value=17 Score=25.54 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=1.5
Q ss_pred ccCCCCCCceee--ecc
Q psy8899 21 MAHAPPGHHSVM--GRP 35 (73)
Q Consensus 21 ~~~pPpGyhSVi--G~p 35 (73)
-++..|||||++ |+|
T Consensus 116 dar~k~gyh~i~~~~~p 132 (170)
T 3pyi_B 116 DARKKAGYHEIADPGKP 132 (170)
T ss_dssp --------------CCC
T ss_pred ccccCCCccccccCCCC
Confidence 567889999996 544
No 19
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=21.49 E-value=28 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=8.7
Q ss_pred CCCCceeeec
Q psy8899 25 PPGHHSVMGR 34 (73)
Q Consensus 25 PpGyhSViG~ 34 (73)
-|.||+|+|+
T Consensus 59 G~~WhcIVG~ 68 (97)
T 4ds1_A 59 GNTWHVIVGK 68 (97)
T ss_dssp CSCEEEEEEE
T ss_pred CCCCEEEEcc
Confidence 4679999999
Done!