RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8899
         (73 letters)



>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere
           reverse transcriptase complex (TERT). Tankyrase 1
           poly-ADP-ribosylates Telomere Repeat Binding Factor 1
           (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself
           or TRF1. The tankyrases also contain multiple ankyrin
           repeats that mediate protein-protein interaction
           (binding TRF1 and insulin-responsive aminopeptidase) and
           may function as a complex. Overexpression of Tank1
           promotes increased telomere length when overexpressed,
           while overexpressed Tank2 has been shown to promote PARP
           cleavage- independent cell death (necrosis).
          Length = 223

 Score = 84.6 bits (209), Expect = 3e-22
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query: 11  KSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
           KSFLQF+A+KMAHAPPGHHSV+GRPS  GL + EYV+YRGEQ    YL
Sbjct: 168 KSFLQFSAMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYL 215


>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
          Length = 1374

 Score = 27.0 bits (59), Expect = 0.86
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 45   YVVYRGEQMCISYLAK-NLYLRLD 67
            YV+YRG + CI++LA   L+L L+
Sbjct: 1121 YVLYRGTRSCINFLASAKLFLLLN 1144


>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
          Length = 643

 Score = 26.7 bits (59), Expect = 0.96
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)

Query: 32  MGRP-----SSGGLYFPEYVVYRGEQMCISYL 58
           +G+P     S G L + EY+VY  +Q+ + Y+
Sbjct: 602 LGKPVESPYSKGSLEYNEYIVYNVDQIRMRYV 633


>gnl|CDD|173776 cd01026, TOPRIM_OLD, TOPRIM_OLD: topoisomerase-primase (TOPRIM)
          nucleotidyl transferase/hydrolase domain of the type
          found in bacterial and archaeal nucleases of the OLD
          (overcome lysogenization defect) family.  The
          bacteriophage P2 OLD protein, which has DNase as well
          as RNase activity, consists of an N-terminal ABC-type
          ATPase domain and a C-terminal Toprim domain; the
          nuclease activity of OLD is stimulated by ATP, though
          the ATPase activity is not DNA-dependent. Functional
          details on OLD are scant and further experimentation is
          required to define the relationship between the ATPase
          and Toprim nuclease domains.  The TOPRIM domain has two
          conserved motifs, one of which centers at a conserved
          glutamate and the other one at two conserved aspartates
          (DxD).  The conserved glutamate may act as a general
          acid in strand cleavage by nucleases. The DXD motif may
          co-ordinate Mg2+, a cofactor required for full
          catalytic function.
          Length = 97

 Score = 25.7 bits (57), Expect = 1.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 51 EQMCISYLAKNLYLRLDKAN 70
          E++ +  LAK L L LD+A 
Sbjct: 14 EEILLPALAKKLGLDLDEAG 33


>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain.
           Poly(ADP-ribose) polymerase catalyzes the covalent
           attachment of ADP-ribose units from NAD+ to itself and
           to a limited number of other DNA binding proteins, which
           decreases their affinity for DNA. Poly(ADP-ribose)
           polymerase is a regulatory component induced by DNA
           damage. The carboxyl-terminal region is the most highly
           conserved region of the protein. Experiments have shown
           that a carboxyl 40 kDa fragment is still catalytically
           active.
          Length = 206

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 23/66 (34%)

Query: 16  FNAIKMAHAPPGHHSVMGR--------------PS---------SGGLYFPEYVVYRGEQ 52
             A      PPG HSV G               P          S  L + EYVVY   Q
Sbjct: 136 TKADYAEKLPPGKHSVKGLGKTAPEDFVWLDGVPLGKPVATGYDSSVLLYNEYVVYNVNQ 195

Query: 53  MCISYL 58
           +   YL
Sbjct: 196 VRPKYL 201


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,647,724
Number of extensions: 266365
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 7
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)