RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8899
(73 letters)
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold,
transfer ribosylation; HET: SO4; 1.75A {Homo sapiens}
PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A*
3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A*
3uh2_A* 3uh4_A* 4dvi_A*
Length = 240
Score = 54.7 bits (131), Expect = 4e-11
Identities = 34/58 (58%), Positives = 39/58 (67%)
Query: 1 MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
+ KSFLQF+A+KMAH+PPGHHSV GRPS GL EYV+YRGEQ YL
Sbjct: 173 QLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYL 230
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15,
structural genomics structural genomics consortium, SGC;
HET: 3AB; 2.70A {Homo sapiens}
Length = 277
Score = 36.0 bits (82), Expect = 3e-04
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 7 ANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
+H Q K + + + G + +VV + + + YL
Sbjct: 216 IDHPDVKCQ-TKKKDSKEIDRRRARIKHSEGGDIPPKYFVVTNNQLLRVKYL 266
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 36.0 bits (82), Expect = 3e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 27/75 (36%)
Query: 11 KSFLQFNAIKMAHAPPGHHSVMGR---------------------------PSSGGLYFP 43
+ +A ++ P G HSV G + L +
Sbjct: 412 NMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYN 471
Query: 44 EYVVYRGEQMCISYL 58
EY+VY Q+ + YL
Sbjct: 472 EYIVYDIAQVNLKYL 486
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE
consortium, glycosyltransferase, NAD, nucleus; 2.20A
{Homo sapiens} PDB: 3gey_A*
Length = 221
Score = 35.0 bits (80), Expect = 6e-04
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 2 FVLGTANHSKSFLQFNAIKMAHAPP-GHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
+ G ++ L K H P SV S +VV+ Q YL
Sbjct: 163 VLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPK----LFVVFFDNQAYPEYL 216
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 35.1 bits (80), Expect = 6e-04
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 27/77 (35%)
Query: 11 KSFLQFNAIKMAHAPPGHHSVMGRP---------------------------SSGGLYFP 43
+ NA + P G HSV G + L +
Sbjct: 267 NMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYN 326
Query: 44 EYVVYRGEQMCISYLAK 60
EY+VY Q+ + YL K
Sbjct: 327 EYIVYDVAQVNLKYLLK 343
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold,
transferase, NAD+, ADP-ribosylat transferase-transferase
inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB:
3goy_A* 3smi_A* 3se2_A*
Length = 193
Score = 35.0 bits (80), Expect = 7e-04
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 2 FVLGTANHSKSFLQFNAIKMAHAPP-GHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
+ G H L K P + +V +V + Q YL
Sbjct: 135 VLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPS----LFVAFYDYQAYPEYL 188
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 34.7 bits (79), Expect = 0.001
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 6 TANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAK 60
A S F+ N + P + + P L + EY+VY Q+ + YL K
Sbjct: 310 MAPSSAHFVTLNGSTV-PLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLK 363
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex,
catalytic fragment, structural GEN structural genomics
consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo
sapiens}
Length = 198
Score = 33.9 bits (77), Expect = 0.002
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 11 KSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFP-EYVVYRGEQMCISYL 58
+ + A G + + P +V++ Q+ Y+
Sbjct: 140 EFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 188
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic
fragment, structural GEN structural genomics consortium,
SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A*
3ce0_A* 3fhb_A*
Length = 357
Score = 33.6 bits (76), Expect = 0.002
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 25 PPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAK 60
P G SS EY++Y+ Q + YL +
Sbjct: 320 PQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLE 355
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense,
immune system, transferase; 1.05A {Homo sapiens}
Length = 173
Score = 33.1 bits (75), Expect = 0.003
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 20 KMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
PP S + S+ +V+++ +Q+ Y+
Sbjct: 133 TYTSPPPQFDSCVDTRSNPS----VFVIFQKDQVYPQYV 167
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase,
structural genomics, structural genomics consortium,
SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A
{Homo sapiens}
Length = 217
Score = 28.1 bits (62), Expect = 0.16
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 22 AHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
H + S M +V++ Q ++L
Sbjct: 162 GHVLLRYDSAMDCICQPS----IFVIFHDTQALPTHL 194
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar
isoform; ALFA helix, 3,10 helix, PI helix, hydrolase;
NMR {Synthetic}
Length = 26
Score = 26.3 bits (57), Expect = 0.23
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 2 FVLGTANHSKSFLQFNAIKMAHA 24
F L +H+ S+L+ A+ +AHA
Sbjct: 2 FCLNCVSHTASYLRLWALSLAHA 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 2.9
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 1 MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVM-----GRPSSGGLYFPEYVVYRGEQMCI 55
FV + FL + IK P + M R + F +Y V R +
Sbjct: 81 KFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--Y 137
Query: 56 SYLAKNLYLRLDKANRI 72
L + L L A +
Sbjct: 138 LKLRQALL-ELRPAKNV 153
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 23.8 bits (51), Expect = 6.6
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 23 HAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYLAKNL 62
H +V+G P +GG VVY I + L
Sbjct: 287 HGYFAQDNVLGYPDTGGQ-----VVY------ILDQVRAL 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.420
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,121,237
Number of extensions: 52876
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 18
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.1 bits)