RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8899
         (73 letters)



>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 217

 Score = 32.0 bits (72), Expect = 0.003
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 25  PPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
            P   + +  P    L + E++VY   Q+ + YL
Sbjct: 175 GPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYL 208


>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase,
           C-terminal domain {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 215

 Score = 29.3 bits (65), Expect = 0.025
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 26  PGHHSVMGRPSSGGLYFPEYVVYRGEQMCISYL 58
           P  + +    +   L + EY+VY   Q+ + YL
Sbjct: 174 PLGNGISTGINDTCLLYNEYIVYDVAQVNLKYL 206


>d2od0a1 d.198.5.2 (A:3-105) Hypothetical protein VP1028 {Vibrio
          parahaemolyticus [TaxId: 670]}
          Length = 103

 Score = 24.4 bits (53), Expect = 1.2
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 41 YFPEYVVYRGEQMCISYLAKNLYLRLDKANR 71
           F  + ++  E M    +   L++R D+   
Sbjct: 22 MFGGFGLFADETMFALVVNNQLHIRADQQTS 52


>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 225

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 26  PGHHSVMGRPSSGGLYFPEYVVY 48
            G+  V+GR +   LY  + V +
Sbjct: 173 KGNVYVVGRKAPKSLYRQDLVSF 195


>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 372

 Score = 23.6 bits (50), Expect = 2.4
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 22 AHAPPGHHSVMGRPSSGGLYFPEYVVYRGE 51
          A  PP   + +          P  VV + +
Sbjct: 1  AQLPPAPPTTVAVIEGLATGTPRRVVNQSD 30


>d1vl2a2 d.210.1.1 (A:174-409) Argininosuccinate synthetase,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 236

 Score = 23.3 bits (50), Expect = 3.1
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 26  PGHHSVMGRPSSGGLYFPEYVVY 48
            G+   + R S   LY PE    
Sbjct: 180 KGNVMPVARYSPYSLYNPELSSM 202


>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
          Length = 328

 Score = 23.2 bits (50), Expect = 3.3
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 1   MFVLGTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEY 45
           + +  TA  + +    +   + H     +S   R  + G+ F   
Sbjct: 120 LVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVI 164


>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
          {Leptospira interrogans [TaxId: 173]}
          Length = 362

 Score = 22.4 bits (47), Expect = 7.3
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 5  GTANHSKSFLQFNAIKMAHAPPGHHSVMGRPSSGGLYFPEYVVYRGEQMCISY 57
          GT + SK+    NAI + HA  G     G  S        +  Y G       
Sbjct: 35 GTLSSSKN----NAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDT 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,256
Number of extensions: 9421
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)