BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy89
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 102
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 104
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 139
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 44 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 103
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 104 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 138
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 48 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 107
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 108 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 142
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 104
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 139
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 105
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHP VYPSGTVCLS+L+E+KD
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKD 105
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 105
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+ PAQAEAYTIY
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIY 140
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+KD
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD 105
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+ PAQAEAYTIY
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIY 140
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNV PSGTVCLS+L+E+KD
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKD 105
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 140
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTV LS+L+E+KD
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKD 102
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 166 bits (419), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTV LS+L+E+KD
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKD 102
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 141 bits (356), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 77/96 (80%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ G T WE G YKL M F ++YP+ PPKC+F PPLFHPNVYPSGTVCLS+L+EE+
Sbjct: 48 KVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE 107
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
WKPAITIKQILLGIQDLL++PNI PAQ EAYT++
Sbjct: 108 GWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMF 143
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
G T W G Y + + + ++YPS PPK KF +HPNVYPSGT+CLS+L+E++D
Sbjct: 45 AGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 104
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAIT+KQI+LG+QDLL+ PN PAQ A+ +
Sbjct: 105 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 139
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
G T W G Y + + + ++YPS PPK KF +HPNVYPSGT+CLS+L+E++D
Sbjct: 43 AGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 102
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W+PAIT+KQI+LG+QDLL+ PN PAQ A+ +
Sbjct: 103 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 137
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +TPW+ G++KL + F +DYP+ PP +F +FHPN+Y G++CL +L + W P
Sbjct: 43 PDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ LL +PN PA +EA +Y
Sbjct: 101 DVAAILTSIQSLLCDPNPNSPANSEAARMY 130
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +TP+E G+++L + F ++YP+ PP KF +FHPNVY +G +CL +L + W P
Sbjct: 43 PADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ L N+PN PA EA T++
Sbjct: 101 DVASILTSIQSLFNDPNPASPANVEAATLF 130
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G++KL + F ++YP+ PP +F +FHPNVY G++CL +L + W P
Sbjct: 43 PEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ LL+EPN PA ++A +Y
Sbjct: 101 DVSSILTSIQSLLDEPNPNSPANSQAAQLY 130
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G++KL + F ++YP+ PP KF +FHPNVY G++CL +L + W P
Sbjct: 43 PQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL--QNRWSPTY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ LL+EPN PA + A +Y
Sbjct: 101 DVAAILTSIQSLLDEPNPNSPANSLAAQLY 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G++KL + F ++YP+ PP KF +FHPNVY G++CL +L + W P
Sbjct: 46 PQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL--QNRWSPTY 103
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ LL+EPN PA + A +Y
Sbjct: 104 DVAAILTSIQSLLDEPNPNSPANSLAAQLY 133
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE--- 80
C + P +TP+ G + ++ F DYP +PPK F P + HPN+YP+G VC+S+L
Sbjct: 39 CLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGD 98
Query: 81 --------EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
E+ W P ++++ILL + +L+EPNI+ A +A I W
Sbjct: 99 DPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDA-CILW 144
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 24 CGF-KNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
GF K P TP+E G + L + +DYP PPK KF ++HPN+ +G +CL +L E
Sbjct: 56 VGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE 115
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W PA+TI+ LL IQ LL++P DP AE +Y
Sbjct: 116 --WSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 3 TQTQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 62
T + +H + +I G + R P TP+E G + L ++ DYP PPK KF +
Sbjct: 58 THSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI 117
Query: 63 FHPNVYP-SGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 114
+HPN+ +G +CL +L E W PA+TI+ LL IQ +L +P DP AE
Sbjct: 118 WHPNISSQTGAICLDILKHE--WSPALTIRTALLSIQAMLADPVPTDPQDAEV 168
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ P ++P+ G + L + F DYP PPK F ++HPN+ +G++CL +L ++
Sbjct: 34 QATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ- 92
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W PA+TI ++LL I LL +PN DP E +Y
Sbjct: 93 -WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVY 127
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 14 IGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTV 73
+ G Y P NT +E G +K R+ F DYP +PP +F ++HPN+Y +G V
Sbjct: 32 VDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 91
Query: 74 CLSLLDEEKD-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
C+S+L D W P ++ ILL + LLNEPN PA +A +Y
Sbjct: 92 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 14 IGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTV 73
+ G Y P NT +E G +K R+ F DYP +PP +F ++HPN+Y +G V
Sbjct: 29 VDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 88
Query: 74 CLSLLDEEKD-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
C+S+L D W P ++ ILL + LLNEPN PA +A +Y
Sbjct: 89 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +T +ES YKL + F DYP PP KF P +HPNV SG +CL +L E +W +
Sbjct: 48 PKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKE--NWTASY 105
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ ILL +Q LL EPN P A+A ++
Sbjct: 106 DVRTILLSLQSLLGEPNNASPLNAQAADMW 135
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P+ G + L + F DYP PPK F ++HPN+ G +CL +L ++ W PA+
Sbjct: 60 PEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPAL 117
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E +Y
Sbjct: 118 TISKVLLSISSLLTDPNPDDPLVPEIAHLY 147
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W
Sbjct: 42 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WS 99
Query: 86 PAITIKQILLGIQDLLNEPNIKDP 109
PA+ I+ +LL IQ LL+ PN DP
Sbjct: 100 PALQIRTVLLSIQALLSAPNPDDP 123
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W
Sbjct: 41 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WS 98
Query: 86 PAITIKQILLGIQDLLNEPNIKDP 109
PA+ I+ +LL IQ LL+ PN DP
Sbjct: 99 PALQIRTVLLSIQALLSAPNPDDP 122
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W
Sbjct: 44 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WS 101
Query: 86 PAITIKQILLGIQDLLNEPNIKDP 109
PA+ I+ +LL IQ LL+ PN DP
Sbjct: 102 PALQIRTVLLSIQALLSAPNPDDP 125
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W PA+
Sbjct: 42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDP 109
I+ +LL IQ LL+ PN DP
Sbjct: 100 QIRTVLLSIQALLSAPNPDDP 120
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 45 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 102
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 103 TISKVLLSICSLLCDPNPDDPLVPEIARIY 132
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 50 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 107
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 108 TISKVLLSICSLLCDPNPDDPLVPEIARIY 137
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W PA+
Sbjct: 40 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDP 109
I+ +LL IQ LL+ PN DP
Sbjct: 98 QIRTVLLSIQALLSAPNPDDP 118
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 50 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 107
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 108 TISKVLLSICSLLCDPNPDDPLVPEIARIY 137
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 58 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 115
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 116 TISKVLLSICSLLCDPNPDDPLVPEIARIY 145
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 40 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 98 TISKVLLSICSLLCDPNPDDPLVPEIARIY 127
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G+YKL + + YP PPK +F ++HPN+ G +CL +L ++ W PA+
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEA 114
I+ +LL IQ LL+ P DP ++
Sbjct: 98 QIRTVLLSIQALLSSPEPDDPLDSKV 123
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G+YKL + + YP PPK +F ++HPN+ G +CL +L ++ W PA+
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEA 114
I+ +LL IQ LL+ P DP ++
Sbjct: 98 QIRTVLLSIQALLSSPEPDDPLDSKV 123
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD--E 80
R NTP+E G +KL +I + YP PP+ +F P++HPN+ +G +CL +L
Sbjct: 37 RAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPP 96
Query: 81 EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ W+P++ I +L IQ L++EPN DP A+ + +
Sbjct: 97 KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF 134
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 48 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 105
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 106 TISKVLLSICSLLCDPNPDDPLVPEIARIY 135
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 39 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 96
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 97 TISKVLLSICSLLCDPNPDDPLVPEIARIY 126
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P+++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 45 PSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPAL 102
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T+ ++LL I LL +PN DP + IY
Sbjct: 103 TVSKVLLSICSLLCDPNPDDPLVPDIAHIY 132
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 43 PPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 101 TISKVLLSICSLLCDPNPDDPLVPEIARIY 130
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ + P +P+E G ++L + DDYP PK +F ++HPN+ G +CL +L +
Sbjct: 38 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL--KT 95
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDP 109
+W PA+ I+ +LL IQ LL PN DP
Sbjct: 96 NWSPALQIRTVLLSIQALLASPNPNDP 122
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ + P +P+E G ++L + DDYP PK +F ++HPN+ G +CL +L +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL--KT 93
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDP 109
+W PA+ I+ +LL IQ LL PN DP
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
Y + P ++P+ G + L + F DYP PPK F ++HPN+ +G +CL +L
Sbjct: 32 YHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILK 91
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ W PA+T+ ++LL I LL + N DP E IY
Sbjct: 92 DQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 43 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPAL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 101 TISKVLLSICSLLCDPNPDDPLVPEIARIY 130
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 40 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 98 TISKVLLSICSLLCDPNPDDPLVPEIARIY 127
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 58 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPAL 115
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 116 TISKVLLSICSLLCDPNPDDPLVPEIARIY 145
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++SG + YP PPK K E ++HPN+ G VCL++L E DWKP +
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRE--DWKPVL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
TI I+ G+Q L EPN +DP EA +
Sbjct: 101 TINSIIYGLQYLFLEPNPEDPLNKEAAEV 129
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ ++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 46 PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPAL 103
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T+ ++LL I LL +PN DP + IY
Sbjct: 104 TVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ ++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 42 PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T+ ++LL I LL +PN DP + IY
Sbjct: 100 TVSKVLLSICSLLCDPNPDDPLVPDIAQIY 129
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 28 NPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD---- 83
P +T +E G + + F DYP +PPK +F +FHPN+YP G VC+S+L D
Sbjct: 46 GPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMG 105
Query: 84 -------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P ++++ILL + +L EPN + A +A ++
Sbjct: 106 YESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 147
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ ++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 58 PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPAL 115
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T+ ++LL I LL +PN DP + IY
Sbjct: 116 TVSKVLLSICSLLCDPNPDDPLVPDIAQIY 145
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 28 NPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD---- 83
P +T +E G + + F DYP +PPK +F +FHPN+YP G VC+S+L D
Sbjct: 48 GPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMG 107
Query: 84 -------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P ++++ILL + +L EPN + A +A ++
Sbjct: 108 YESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 149
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 28 NPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD---- 83
P +T +E G + + F DYP +PPK +F +FHPN+YP G VC+S+L D
Sbjct: 45 GPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMG 104
Query: 84 -------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P ++++ILL + +L EPN + A +A ++
Sbjct: 105 YESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 146
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP P+ F ++HPN+ +G +CL +L ++ W PA+
Sbjct: 43 PDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPAL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
T+ ++LL I LL +PN DP E +
Sbjct: 101 TLSRVLLSISSLLTDPNPSDPLDPEVANV 129
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD----- 83
P +T +E G + + F DYP +PPK +F +FHPN+YP G VC+S+L D
Sbjct: 43 PEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGY 102
Query: 84 ------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P ++++ILL + +L EPN + A +A ++
Sbjct: 103 ESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 143
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 39 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPAL 96
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
I ++LL I LL +PN DP E IY
Sbjct: 97 KISKVLLSICSLLCDPNPDDPLVPEIARIY 126
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85
+ P TP+ G ++++++ D+P++PPK F +FHPNV +G +C+++L ++DW
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVL--KRDWT 106
Query: 86 PAITIKQILLGIQDLLNEPNIKDPAQAEA 114
+ I+ +LL I+ LL PN + EA
Sbjct: 107 AELGIRHVLLTIKCLLIHPNPESALNEEA 135
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ + P +P+E G ++L + DDYP PK +F ++HPN+ G + L +L +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVL--KT 93
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDP 109
+W PA+ I+ +LL IQ LL PN DP
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HP + +G++ L +L + W PA+
Sbjct: 40 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQ--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 98 TISKVLLSICSLLCDPNPDDPLVPEIARIY 127
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE-------- 80
P +T +E G +K + F DYP PPK KF ++HPN+ G VC+S+L +
Sbjct: 43 PPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGY 102
Query: 81 ---EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
E+ W P T++ ILL + +L +PN + PA +A +
Sbjct: 103 ERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM 142
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
Y R P + +E G + L + F DYP PPK F ++H N+ G +CL +L
Sbjct: 33 YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK 92
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ +W PA+TI ++LL I LL + N DP T Y
Sbjct: 93 D--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 129
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE-------- 80
P +T +E G +K + F DYP PPK KF ++HPNV +G VC+S+L E
Sbjct: 57 PPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGY 116
Query: 81 ---EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 114
E+ W P T++ I++ + +L +PN PA +A
Sbjct: 117 EKPEERWLPIHTVETIMISVISMLADPNGDSPANVDA 153
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 25 GFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDW 84
G P N P++ G++++ + F +YP PPK F+ ++HPN+ G VCL ++ E +W
Sbjct: 39 GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE-NW 97
Query: 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
KPA Q++ + L+N+P + P +A+ Y
Sbjct: 98 KPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 131
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 25 GFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDW 84
G P N P++ G++++ + F +YP PPK F+ ++HPN+ G VCL ++ E +W
Sbjct: 37 GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE-NW 95
Query: 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
KPA Q++ + L+N+P + P +A+ Y
Sbjct: 96 KPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ + P +P+E G ++L + DDYP PK +F ++HP + G + L +L +
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVL--KT 93
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDP 109
+W PA+ I+ +LL IQ LL PN DP
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDW 84
F P TP+E G + + + +YP PPK +F+ ++HPN+ +G +CL +L + W
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL--KNAW 95
Query: 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
P IT+K L+ +Q LL P DP AE Y
Sbjct: 96 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDW 84
F P TP+E G + + + +YP PPK +F+ ++HPN+ +G +CL +L W
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL--RNAW 96
Query: 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
P IT+K L+ +Q LL P DP AE Y
Sbjct: 97 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 130
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++SG + YP PPK K E ++HPN+ G V L++L E DWKP +
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRE--DWKPVL 120
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
TI I+ G+Q L EPN +DP EA +
Sbjct: 121 TINSIIYGLQYLFLEPNPEDPLNKEAAEV 149
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ ++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 46 PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPAL 103
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T+ ++LL I LL +PN DP + IY
Sbjct: 104 TVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
Y R P + +E G + L + F +YP PPK F ++H N+ G +CL +L
Sbjct: 78 YEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK 137
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ +W PA+TI ++LL I LL + N DP T Y
Sbjct: 138 D--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P P+ ++ LR+ F +YP PP KF ++HPNV +G +CL ++ E +WKP
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE-NWKPCT 101
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAE 113
Q+L + L+N PNI++P + +
Sbjct: 102 KTCQVLEALNVLVNRPNIREPLRMD 126
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P P+ ++ LR+ F +YP PP KF ++HPNV +G +CL ++ E +WKP
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE-NWKPCT 98
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAE 113
Q+L + L+N PNI++P + +
Sbjct: 99 KTCQVLEALNVLVNRPNIREPLRMD 123
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 30 TNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAIT 89
T +E YKL + F YP P KF P +HPNV G + L +L E+ W
Sbjct: 70 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYD 127
Query: 90 IKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ ILL IQ LL EPNI P A ++
Sbjct: 128 VRTILLSIQSLLGEPNIDSPLNTHAAELW 156
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 31 NTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPAIT 89
N+ W+ ++L + F +Y PP KF FHPNV P +G C+ LD + W T
Sbjct: 64 NSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYT 123
Query: 90 IKQILLGIQDLLNEPNIKDPAQAEAYTI 117
+ ILL +Q +L+ P +++P EA I
Sbjct: 124 LSSILLALQVMLSNPVLENPVNLEAARI 151
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 37 GSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAITIKQILLG 96
GS + F + YP PPK +FHPN+ G VCL++L E DW PA+ ++ I+ G
Sbjct: 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRE--DWSPALDLQSIITG 137
Query: 97 IQDLLNEPNIKDPAQAEAYTI 117
+ L EPN DP +A +
Sbjct: 138 LLFLFLEPNPNDPLNKDAAKL 158
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 1 DFTQTQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEP 60
DFT+ L + G F P T +E G +K+ + DDYP P F
Sbjct: 10 DFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN 69
Query: 61 PLFHPNV-YPSGTVCLSLLDEEKDWKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTI 117
L HPNV SG+VCL ++++ W P ++ + + + LL PN DP ++A ++
Sbjct: 70 KLLHPNVDEASGSVCLDVINQT--WTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL 126
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 31 NTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNVYPSGTVCLSLLDEEKDWKPAIT 89
NT + + YKL++IF DDYP PP F + P H +VY +G +CLSLL + D+ P+++
Sbjct: 47 NTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGD--DYNPSLS 104
Query: 90 IKQILLGIQDLLNE 103
I ++L I +L+
Sbjct: 105 ISGLVLSIISMLSS 118
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP-----LFHPNVYPSGTVCLSLLDE--- 80
P +TP+ +G ++ + F DYPS+PP E F+PN+Y G VCLS+L+
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178
Query: 81 --EKDWKPAI-TIKQILLGIQDLL--NEPNIKDPA 110
E+ W P + Q+L+ +Q L+ EP +P
Sbjct: 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPG 213
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDW 84
F P TP+E G +K+R+ D YP P F +FHPN+ SGTVCL ++++ W
Sbjct: 57 FYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ--TW 114
Query: 85 KPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY 118
+ I + LL PN DP +A +Y
Sbjct: 115 TALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++
Sbjct: 57 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 116
Query: 82 KDWKPAITIKQI 93
W A+T++ +
Sbjct: 117 --WAAAMTLRTV 126
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDW 84
FK P TP+E G++ L + DYP P F + HPNV SG+VCL ++++ W
Sbjct: 44 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQT--W 101
Query: 85 KPAITIKQIL-LGIQDLLNEPNIKDPAQAEA 114
P ++ I + + LL PN DP +A
Sbjct: 102 TPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++
Sbjct: 44 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 103
Query: 82 KDWKPAITIKQI 93
W A+T++ +
Sbjct: 104 --WAAAMTLRTV 113
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++
Sbjct: 93 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 152
Query: 82 KDWKPAITIKQI 93
W A+T++ +
Sbjct: 153 --WAAAMTLRTV 162
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++
Sbjct: 41 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 100
Query: 82 KDWKPAITIKQI 93
W A+T++ +
Sbjct: 101 --WAAAMTLRTV 110
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++
Sbjct: 42 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 101
Query: 82 KDWKPAITIKQI 93
W A+T++ +
Sbjct: 102 --WAAAMTLRTV 111
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 31 NTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNVYPSGTVCLSLLDEEKDWKPAIT 89
NT + + YK+++IF D+YP PP F + P H +VY +G +CLS+L + D+ P+++
Sbjct: 61 NTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGD--DYNPSLS 118
Query: 90 IKQILLGIQDLLNE 103
I ++L I +L+
Sbjct: 119 ISGLILSIISMLSS 132
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 34 WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK----DWKPAIT 89
++ G ++ D Y PPK K ++HPN+ +G +CLSLL E W P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 90 IKQILLGIQDLLNE-PNIKDPAQAEA 114
+K ++ G+ L + N DP EA
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEA 143
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 34 WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK----DWKPAIT 89
++ G ++ D Y PPK K ++HPN+ +G +CLSLL E W P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 90 IKQILLGIQDLLNE-PNIKDPAQAEA 114
+K ++ G+ L + N DP EA
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEA 143
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 32 TPWESGSYKLRMIFKDDYPSTPPKCKF--EPPLFHPNVYPSGTVCLSLLDEEKDWKPAIT 89
T +E ++L F YP P+ F E HP+VY +G +CLS+L E DW PA++
Sbjct: 66 TLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTE--DWSPALS 123
Query: 90 IKQILLGIQDLLN 102
++ + L I +L+
Sbjct: 124 VQSVCLSIISMLS 136
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV-YPSGTVCLSLLDEEKD 83
P++TP+E+ +++ + YP PPK F + + H NV +G +CL++L E +
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE-E 112
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
W P + + + LL EP P + I
Sbjct: 113 WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAI 146
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV-YPSGTVCLSLLDEEKD 83
P++TP+E+ +++ + YP PPK F + + H NV +G +CL++L E +
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPE-E 112
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
W P + + + LL EP P + I
Sbjct: 113 WTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNI 146
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV-YPSGTVCLSLLDEEKD 83
P++TP+E+ +++ + YP PPK F + + H NV +G +CL++L E +
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE-E 112
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117
W P + + + LL EP P + I
Sbjct: 113 WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNI 146
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 32 TPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAITIK 91
T +E+ Y L + D+YP +PP KF+ + V G V + L K+W TI+
Sbjct: 67 TVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIE 126
Query: 92 QILLGI-QDLLNEPNIK--DPAQAEAYT 116
IL+ + Q++L+ N + P + E Y+
Sbjct: 127 TILISLRQEMLSSANKRLPQPNEGEVYS 154
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 32 TPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAITIK 91
T +E+ Y L + D+YP +PP KF+ + V G V + L K+W TI+
Sbjct: 71 TVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIE 130
Query: 92 QILLGI-QDLLNEPNIK--DPAQAEAYT 116
IL+ + Q++L+ N + P + E Y+
Sbjct: 131 TILISLRQEMLSSANKRLPQPNEGEVYS 158
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 38 SYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE 80
+Y+L ++F DDYP PP +F P++ P V G +C ++++
Sbjct: 70 TYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND 112
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 27 KNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--LFHPNVYPSGTVCLSLLDEEKD- 83
+ P TP+E G Y ++IF ++P PP P F N +CLS+ D D
Sbjct: 51 RGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCLSITDFHPDT 106
Query: 84 WKPAITIKQILLGIQDLLNE 103
W PA ++ IL G+ + E
Sbjct: 107 WNPAWSVSTILTGLLSFMVE 126
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ E+ Y L + +YP +PPK F + P V P+ + +DWK A
Sbjct: 49 PPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAY 108
Query: 89 TIKQILLGIQDLLNEP---NIKDPAQAEAY 115
T++ +LL ++ + P ++ P + E +
Sbjct: 109 TMETLLLDLRKEMATPANKKLRQPKEGETF 138
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++ E+ Y L + +YP +PPK F + P V P+ + +DWK A
Sbjct: 48 PPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAY 107
Query: 89 TIKQILLGIQDLLNEP---NIKDPAQAEAY 115
T++ +LL ++ + P ++ P + E +
Sbjct: 108 TMETLLLDLRKEMATPANKKLRQPKEGETF 137
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 41 LRMIFKDDYPSTPPKCKFEPPLFHPN-VYPSGTVCLSLLDEEKDWKPAITIKQILLGIQD 99
L FKD++P PP + P+ V G +C+ LL ++ W A +I+ +++ I
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQ-GWSSAYSIESVIMQISA 130
Query: 100 LL 101
L
Sbjct: 131 TL 132
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 41 LRMIFKDDYPSTPPKCKFEPPLFHPN-VYPSGTVCLSLLDEEKDWKPAITIKQILLGIQD 99
L FKD++P PP + P+ V G +C+ LL ++ W A +I+ +++ I
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQI-- 149
Query: 100 LLNEPNIKDPAQAE 113
N +K A+ +
Sbjct: 150 --NATLVKGKARVQ 161
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + + SG V + W+ +
Sbjct: 48 PPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNS 107
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEAYT 116
+IK +L ++ L +++ N+K P E T
Sbjct: 108 YSIKVVLQELRRLMMSKENMKLPQPPEGQT 137
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + + SG V + W+ +
Sbjct: 58 PPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNS 117
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEAYT 116
+IK +L ++ L +++ N+K P E T
Sbjct: 118 YSIKVVLQELRRLMMSKENMKLPQPPEGQT 147
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + + SG V + W+ +
Sbjct: 47 PPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNS 106
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEAYT 116
+IK +L ++ L +++ N+K P E T
Sbjct: 107 YSIKVVLQELRRLMMSKENMKLPQPPEGQT 136
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + + SG V + W+ +
Sbjct: 53 PPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNS 112
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEAYT 116
+IK +L ++ L +++ N+K P E T
Sbjct: 113 YSIKVVLQELRRLMMSKENMKLPQPPEGQT 142
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-GTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + V S G V + W+ +
Sbjct: 68 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNS 127
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEA 114
+IK +L ++ L +++ N+K P E
Sbjct: 128 YSIKVVLQELRRLMMSKENMKLPQPPEG 155
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-GTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + V S G V + W+ +
Sbjct: 78 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNS 137
Query: 88 ITIKQILLGIQDL-LNEPNIK--DPAQAEAYT 116
+IK +L ++ L +++ N+K P + + Y+
Sbjct: 138 YSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 169
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-GTVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + V S G V + W+ +
Sbjct: 50 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNS 109
Query: 88 ITIKQILLGIQDL-LNEPNIKDPAQAEA 114
+IK +L ++ L +++ N+K P E
Sbjct: 110 YSIKVVLQELRRLMMSKENMKLPQPPEG 137
>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
With An Aglycone Dimboa
pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
Length = 564
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 67 VYPSGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNEPNIKDP 109
+YP G L L+ +EK P I I + GI D+ +P + DP
Sbjct: 427 MYPKGLTDLLLIMKEKYGNPPIFITEN--GIADVEGDPEMPDP 467
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 62
YP+R G TN PW + ++ L++I P T K F+ P
Sbjct: 233 YPERLGKALLTNIPWLAWTF-LKLIHPFIDPLTREKLVFDEPF 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,742
Number of Sequences: 62578
Number of extensions: 193218
Number of successful extensions: 450
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 123
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)