Query psy89
Match_columns 119
No_of_seqs 111 out of 1079
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 22:19:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy89.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/89hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 2.6E-45 5.7E-50 247.9 9.7 115 2-118 13-127 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4E-44 8.7E-49 246.2 11.1 111 6-118 21-132 (153)
3 KOG0419|consensus 100.0 1.1E-42 2.3E-47 230.2 9.4 116 1-118 12-130 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.6E-41 7.8E-46 232.7 12.1 112 5-118 17-128 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-40 2.3E-45 229.3 12.0 113 4-118 15-127 (147)
6 KOG0425|consensus 100.0 3.7E-40 8E-45 223.7 10.4 116 3-118 18-145 (171)
7 PF00179 UQ_con: Ubiquitin-con 100.0 4.5E-38 9.8E-43 214.2 9.2 115 3-118 10-125 (140)
8 KOG0418|consensus 100.0 1.4E-37 3.1E-42 216.6 8.8 110 7-118 23-133 (200)
9 KOG0424|consensus 100.0 7.7E-37 1.7E-41 204.9 10.2 112 7-118 19-137 (158)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.9E-36 4.2E-41 206.4 11.3 114 4-118 13-126 (141)
11 smart00212 UBCc Ubiquitin-conj 100.0 2.6E-35 5.6E-40 201.7 11.9 113 5-118 13-126 (145)
12 KOG0421|consensus 100.0 3.2E-36 7E-41 202.2 7.2 108 8-117 47-154 (175)
13 KOG0426|consensus 100.0 7.5E-35 1.6E-39 193.2 9.4 111 7-117 19-143 (165)
14 KOG0422|consensus 100.0 9.1E-33 2E-37 184.5 9.5 106 11-118 24-129 (153)
15 KOG0416|consensus 100.0 9.6E-33 2.1E-37 189.8 6.3 109 8-118 18-128 (189)
16 KOG0420|consensus 100.0 1.8E-31 4E-36 183.7 7.9 102 14-118 52-155 (184)
17 KOG0423|consensus 100.0 3E-30 6.5E-35 178.2 2.8 110 6-117 26-135 (223)
18 KOG0427|consensus 99.9 9.2E-26 2E-30 149.7 10.1 105 5-111 28-135 (161)
19 KOG0894|consensus 99.9 7E-24 1.5E-28 150.9 9.8 96 5-104 20-118 (244)
20 KOG0428|consensus 99.8 4.2E-19 9E-24 129.0 8.0 96 5-102 25-121 (314)
21 KOG0429|consensus 99.7 7.3E-18 1.6E-22 120.7 8.8 108 8-118 37-150 (258)
22 KOG0895|consensus 99.7 1E-16 2.3E-21 134.3 5.4 94 9-102 870-970 (1101)
23 KOG0896|consensus 99.6 7.7E-15 1.7E-19 97.9 6.5 95 9-103 27-123 (138)
24 KOG0895|consensus 99.4 3.7E-13 8.1E-18 113.3 9.2 98 6-103 296-404 (1101)
25 KOG0897|consensus 98.7 9.1E-09 2E-13 67.2 3.1 73 39-112 13-88 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 5.7E-08 1.2E-12 65.7 6.8 67 35-103 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.5 1.3E-07 2.9E-12 63.0 4.8 77 19-102 32-116 (121)
28 KOG2391|consensus 97.8 0.00011 2.4E-09 56.4 8.1 79 19-104 52-138 (365)
29 PF14462 Prok-E2_E: Prokaryoti 95.6 0.24 5.2E-06 33.1 8.9 90 10-102 14-120 (122)
30 PF14457 Prok-E2_A: Prokaryoti 95.3 0.026 5.6E-07 39.5 3.7 61 41-102 57-125 (162)
31 PF08694 UFC1: Ubiquitin-fold 94.8 0.0076 1.6E-07 41.2 -0.1 74 19-93 47-134 (161)
32 PF05773 RWD: RWD domain; Int 94.8 0.062 1.3E-06 34.1 4.2 43 19-61 29-73 (113)
33 smart00591 RWD domain in RING 93.4 0.11 2.4E-06 32.7 3.2 26 36-61 40-65 (107)
34 KOG3357|consensus 88.5 0.59 1.3E-05 31.6 3.0 72 15-87 46-128 (167)
35 PF06113 BRE: Brain and reprod 78.1 8.6 0.00019 30.0 5.9 61 33-101 61-124 (333)
36 PF14460 Prok-E2_D: Prokaryoti 75.0 5.5 0.00012 27.9 3.9 37 60-101 90-129 (175)
37 TIGR03737 PRTRC_B PRTRC system 65.8 15 0.00032 27.2 4.5 43 60-108 131-177 (228)
38 KOG4018|consensus 63.6 7.2 0.00016 28.5 2.5 40 18-58 29-70 (215)
39 cd00421 intradiol_dioxygenase 61.8 13 0.00028 25.2 3.5 24 36-59 65-89 (146)
40 cd03457 intradiol_dioxygenase_ 61.4 13 0.00027 26.6 3.4 25 36-60 86-110 (188)
41 PF04881 Adeno_GP19K: Adenovir 53.7 14 0.00031 24.9 2.5 20 15-34 43-62 (139)
42 cd03459 3,4-PCD Protocatechuat 52.0 23 0.0005 24.5 3.4 23 37-59 73-100 (158)
43 PF00845 Gemini_BL1: Geminivir 50.9 41 0.00089 25.3 4.7 46 17-62 100-153 (276)
44 cd05845 Ig2_L1-CAM_like Second 49.0 41 0.00089 21.2 4.0 25 35-61 17-41 (95)
45 KOG0177|consensus 43.2 5.9 0.00013 28.5 -0.6 31 71-103 136-166 (200)
46 PF09765 WD-3: WD-repeat regio 42.8 14 0.00031 28.2 1.3 63 17-101 123-186 (291)
47 TIGR02423 protocat_alph protoc 42.4 37 0.00081 24.3 3.4 24 36-59 96-124 (193)
48 KOG0662|consensus 40.6 33 0.00071 25.1 2.8 58 51-108 167-226 (292)
49 PF06113 BRE: Brain and reprod 40.5 36 0.00079 26.6 3.2 23 38-60 307-329 (333)
50 PF03366 YEATS: YEATS family; 39.2 92 0.002 19.1 5.1 40 20-61 2-41 (84)
51 cd03463 3,4-PCD_alpha Protocat 39.2 46 0.001 23.7 3.4 23 37-59 93-120 (185)
52 KOG0309|consensus 37.5 1.4E+02 0.0031 26.4 6.4 41 20-61 449-491 (1081)
53 KOG4445|consensus 37.4 46 0.00099 25.9 3.3 25 37-61 45-69 (368)
54 KOG1047|consensus 35.2 42 0.00092 28.2 3.0 29 32-61 248-279 (613)
55 TIGR02439 catechol_proteo cate 28.8 79 0.0017 24.2 3.4 14 37-50 181-194 (285)
56 PF02563 Poly_export: Polysacc 28.7 73 0.0016 19.1 2.7 36 66-103 34-69 (82)
57 cd03461 1,2-HQD Hydroxyquinol 26.0 96 0.0021 23.6 3.4 16 36-51 172-187 (277)
58 cd03464 3,4-PCD_beta Protocate 24.4 1.1E+02 0.0023 22.5 3.3 24 36-59 122-152 (220)
59 cd03460 1,2-CTD Catechol 1,2 d 24.4 1.1E+02 0.0023 23.4 3.4 15 36-50 176-190 (282)
60 TIGR02438 catachol_actin catec 24.3 1.1E+02 0.0024 23.4 3.4 15 36-50 184-198 (281)
61 COG2819 Predicted hydrolase of 23.8 1.2E+02 0.0026 23.0 3.5 29 32-60 16-46 (264)
62 TIGR02422 protocat_beta protoc 23.7 1.1E+02 0.0025 22.3 3.3 24 36-59 117-147 (220)
63 KOG4278|consensus 23.2 98 0.0021 27.1 3.2 56 16-77 182-241 (1157)
64 TIGR02465 chlorocat_1_2 chloro 22.0 1.3E+02 0.0029 22.4 3.4 15 36-50 150-164 (246)
65 PF09943 DUF2175: Uncharacteri 21.7 92 0.002 20.1 2.2 20 20-41 1-20 (101)
66 TIGR02296 HpaC 4-hydroxyphenyl 20.7 75 0.0016 21.6 1.8 30 51-80 36-68 (154)
No 1
>KOG0417|consensus
Probab=100.00 E-value=2.6e-45 Score=247.89 Aligned_cols=115 Identities=30% Similarity=0.654 Sum_probs=106.4
Q ss_pred ccccCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCC
Q psy89 2 FTQTQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEE 81 (119)
Q Consensus 2 ~~~~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~ 81 (119)
+.+++.+.+....+++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|+|+||||||++.|+||+++|..
T Consensus 13 l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~- 91 (148)
T KOG0417|consen 13 LLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKD- 91 (148)
T ss_pred HhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhc-
Confidence 3444555555556688999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 82 ~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+|+|+++|.+||++|+++|.+||+++|++.++|++|
T Consensus 92 -~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~ 127 (148)
T KOG0417|consen 92 -QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELY 127 (148)
T ss_pred -cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence 899999999999999999999999999999999876
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-44 Score=246.19 Aligned_cols=111 Identities=39% Similarity=0.741 Sum_probs=103.5
Q ss_pred CCCcccEEeeCC-CceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCC
Q psy89 6 QNHHLGLRIGYG-HGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDW 84 (119)
Q Consensus 6 ~~~~~~v~~~~~-~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W 84 (119)
+...+.+.+..+ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||||||+++|+||+++|.. +|
T Consensus 21 ~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~--~W 98 (153)
T COG5078 21 PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKD--RW 98 (153)
T ss_pred CCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhC--CC
Confidence 334555555555 999999999999999999999999999999999999999999999999999999999999995 99
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 85 ~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+|++++++||++|+++|.+||.++|+|.|||.+|
T Consensus 99 sP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~ 132 (153)
T COG5078 99 SPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY 132 (153)
T ss_pred CccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 9999999999999999999999999999999876
No 3
>KOG0419|consensus
Probab=100.00 E-value=1.1e-42 Score=230.24 Aligned_cols=116 Identities=36% Similarity=0.760 Sum_probs=107.6
Q ss_pred CccccC-CCcccEE--eeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccC
Q psy89 1 DFTQTQ-NHHLGLR--IGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSL 77 (119)
Q Consensus 1 d~~~~~-~~~~~v~--~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~ 77 (119)
||++.+ +++.||. ..++|++.|+++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++|||||+.+|.+|+++
T Consensus 12 Dfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDi 91 (152)
T KOG0419|consen 12 DFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDI 91 (152)
T ss_pred HHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHH
Confidence 344433 4666666 6678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 78 LDEEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 78 l~~~~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
|.. +|+|.|++.+||.+||+||.+|++++|+|.|||.+|
T Consensus 92 LqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf 130 (152)
T KOG0419|consen 92 LQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF 130 (152)
T ss_pred Hhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 996 999999999999999999999999999999999987
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.6e-41 Score=232.75 Aligned_cols=112 Identities=31% Similarity=0.666 Sum_probs=104.5
Q ss_pred cCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCC
Q psy89 5 TQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDW 84 (119)
Q Consensus 5 ~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W 84 (119)
.+...+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+|+||||+++|.||+++|.. +|
T Consensus 17 ~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~--~W 94 (152)
T PTZ00390 17 DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KW 94 (152)
T ss_pred CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcc--cC
Confidence 3445555556678999999999999999999999999999999999999999999999999999999999999974 89
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 85 ~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+|++|+++||++|+++|.+|++++|+|.+||++|
T Consensus 95 ~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~ 128 (152)
T PTZ00390 95 SPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF 128 (152)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999886
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-40 Score=229.29 Aligned_cols=113 Identities=29% Similarity=0.698 Sum_probs=105.2
Q ss_pred ccCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCC
Q psy89 4 QTQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83 (119)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~ 83 (119)
+.+...+.+.++++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|+||||+.+|.||+++|.. +
T Consensus 15 ~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~--~ 92 (147)
T PLN00172 15 KDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRD--Q 92 (147)
T ss_pred hCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcC--C
Confidence 33345555667788999999999999999999999999999999999999999999999999999999999999974 9
Q ss_pred CCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 84 W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
|+|++++++||.+|+++|.+|+.++|+|.+||++|
T Consensus 93 W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~ 127 (147)
T PLN00172 93 WSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF 127 (147)
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999886
No 6
>KOG0425|consensus
Probab=100.00 E-value=3.7e-40 Score=223.72 Aligned_cols=116 Identities=32% Similarity=0.642 Sum_probs=106.5
Q ss_pred cccCCCcccEEee-CCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCC-
Q psy89 3 TQTQNHHLGLRIG-YGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE- 80 (119)
Q Consensus 3 ~~~~~~~~~v~~~-~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~- 80 (119)
...+-.++.+.+. ++|+++|.+.|+||++|+||||.|+..+.||++||.+||+++|.|+||||||+++|+||++||..
T Consensus 18 ~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~p 97 (171)
T KOG0425|consen 18 QEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPP 97 (171)
T ss_pred hcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCC
Confidence 3445566667744 55999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----------CCCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 81 ----------EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 81 ----------~~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
.++|.|..|+++||++|.+||.+||.++|+|-+||+.|
T Consensus 98 gdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~ 145 (171)
T KOG0425|consen 98 GDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW 145 (171)
T ss_pred CCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence 46899999999999999999999999999999999864
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.5e-38 Score=214.18 Aligned_cols=115 Identities=37% Similarity=0.761 Sum_probs=101.5
Q ss_pred cccCCCcccEEeeCC-CceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCC
Q psy89 3 TQTQNHHLGLRIGYG-HGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEE 81 (119)
Q Consensus 3 ~~~~~~~~~v~~~~~-~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~ 81 (119)
++++...+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|+|+||||+.+|++|+++|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~- 88 (140)
T PF00179_consen 10 QKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNP- 88 (140)
T ss_dssp HHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTT-
T ss_pred hhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhc-
Confidence 344556666777776 899999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 82 ~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+.|+|++++.+||.+|+++|.+|+.++|+|.+||++|
T Consensus 89 ~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~ 125 (140)
T PF00179_consen 89 ESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELY 125 (140)
T ss_dssp TTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHH
T ss_pred ccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 4699999999999999999999999999999999876
No 8
>KOG0418|consensus
Probab=100.00 E-value=1.4e-37 Score=216.57 Aligned_cols=110 Identities=30% Similarity=0.650 Sum_probs=104.6
Q ss_pred CCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccC-CCeEEccCCCCCCCCC
Q psy89 7 NHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWK 85 (119)
Q Consensus 7 ~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~W~ 85 (119)
+.++-|+...+|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|+||||||++ +|.||+++|.+ .|+
T Consensus 23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd--~Wa 100 (200)
T KOG0418|consen 23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKD--QWA 100 (200)
T ss_pred hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhc--ccc
Confidence 456777777889999999999999999999999999999999999999999999999999985 89999999996 999
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 86 PAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 86 p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+++|++++|++||++|..|++.||.+.++|++|
T Consensus 101 ~slTlrtvLislQalL~~pEp~dPqDavva~qy 133 (200)
T KOG0418|consen 101 ASLTLRTVLISLQALLCAPEPKDPQDAVVAEQY 133 (200)
T ss_pred hhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999876
No 9
>KOG0424|consensus
Probab=100.00 E-value=7.7e-37 Score=204.93 Aligned_cols=112 Identities=67% Similarity=1.192 Sum_probs=103.5
Q ss_pred CCcccEEeeC-------CCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCC
Q psy89 7 NHHLGLRIGY-------GHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79 (119)
Q Consensus 7 ~~~~~v~~~~-------~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~ 79 (119)
.++.|.+..+ .|++.|+|.|.|+.||+||||.|++++.||++||.+||+|+|.+++|||||+++|.|||++|.
T Consensus 19 ~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~ 98 (158)
T KOG0424|consen 19 DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILN 98 (158)
T ss_pred cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhc
Confidence 4667776432 278999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 80 ~~~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
...+|+|+.||.+||.+||++|.+||..+|+|.||.-.|
T Consensus 99 e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 99 EEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred cccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Confidence 755799999999999999999999999999999998665
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.9e-36 Score=206.43 Aligned_cols=114 Identities=38% Similarity=0.724 Sum_probs=104.8
Q ss_pred ccCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCC
Q psy89 4 QTQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83 (119)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~ 83 (119)
+++...+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|.||++++.. ..
T Consensus 13 ~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~-~~ 91 (141)
T cd00195 13 KDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKT-HG 91 (141)
T ss_pred hCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCC-CC
Confidence 34445555566677999999999999999999999999999999999999999999999999999999999999985 24
Q ss_pred CCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 84 W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
|+|++++++||.+|+++|.+|+.++|+|.+||++|
T Consensus 92 W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~ 126 (141)
T cd00195 92 WSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLY 126 (141)
T ss_pred cCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999886
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.6e-35 Score=201.74 Aligned_cols=113 Identities=38% Similarity=0.679 Sum_probs=103.9
Q ss_pred cCCCcccEEeeCC-CceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCC
Q psy89 5 TQNHHLGLRIGYG-HGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83 (119)
Q Consensus 5 ~~~~~~~v~~~~~-~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~ 83 (119)
++..++.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|.+|+++|.. ++
T Consensus 13 ~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~-~~ 91 (145)
T smart00212 13 DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQ-EK 91 (145)
T ss_pred CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCC-CC
Confidence 3344455555565 999999999999999999999999999999999999999999999999999999999999983 48
Q ss_pred CCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 84 W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
|+|++++.++|.+|+++|.+|+.++|+|.|||.+|
T Consensus 92 W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~ 126 (145)
T smart00212 92 WSPATTLETVLLSIQSLLSEPNPDSPLNADAATLY 126 (145)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999987
No 12
>KOG0421|consensus
Probab=100.00 E-value=3.2e-36 Score=202.18 Aligned_cols=108 Identities=35% Similarity=0.636 Sum_probs=101.7
Q ss_pred CcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCCCCc
Q psy89 8 HHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPA 87 (119)
Q Consensus 8 ~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W~p~ 87 (119)
+++...++.+|++.|.++|.||++|+|||-.|++.+.||.+||++||+|.|+|++|||||+-.|.||++||.. .|+..
T Consensus 47 ~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkd--KWSa~ 124 (175)
T KOG0421|consen 47 PGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKD--KWSAV 124 (175)
T ss_pred CCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHH--HHHHH
Confidence 3444446667999999999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcCHHHHhh
Q psy89 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117 (119)
Q Consensus 88 ~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~ 117 (119)
+.+++||++||++|-+||.++|+|..||++
T Consensus 125 YdVrTILLSiQSLLGEPNn~SPLNaqAAel 154 (175)
T KOG0421|consen 125 YDVRTILLSIQSLLGEPNNSSPLNAQAAEL 154 (175)
T ss_pred HhHHHHHHHHHHHhCCCCCCCcchhHHHHH
Confidence 999999999999999999999999999986
No 13
>KOG0426|consensus
Probab=100.00 E-value=7.5e-35 Score=193.23 Aligned_cols=111 Identities=35% Similarity=0.732 Sum_probs=104.5
Q ss_pred CCcccEE---eeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCC---
Q psy89 7 NHHLGLR---IGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE--- 80 (119)
Q Consensus 7 ~~~~~v~---~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~--- 80 (119)
+++-||. .+++|+++|.|.|.||++|+|+||+|..++.||.+||.+||+++|...++||||+.+|+||+++|..
T Consensus 19 ~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGD 98 (165)
T KOG0426|consen 19 NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGD 98 (165)
T ss_pred CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCC
Confidence 4677777 5567999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --------CCCCCCcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhh
Q psy89 81 --------EKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117 (119)
Q Consensus 81 --------~~~W~p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~ 117 (119)
.++|+|.++++.||+++.+||.+||.++.+|.+|+.+
T Consensus 99 DP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~m 143 (165)
T KOG0426|consen 99 DPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKM 143 (165)
T ss_pred CCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHH
Confidence 4789999999999999999999999999999999875
No 14
>KOG0422|consensus
Probab=100.00 E-value=9.1e-33 Score=184.47 Aligned_cols=106 Identities=29% Similarity=0.654 Sum_probs=102.0
Q ss_pred cEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCCCCcCCH
Q psy89 11 GLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAITI 90 (119)
Q Consensus 11 ~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W~p~~~l 90 (119)
.++++++|++.|++.+. |++.||..|.|++.|.||.+|||+||+|.|.|+|||||||+.|.+|+.++.. ++|.|+++.
T Consensus 24 n~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~-EnWkP~T~t 101 (153)
T KOG0422|consen 24 NIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISA-ENWKPATRT 101 (153)
T ss_pred hhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeec-ccccCcccH
Confidence 45677889999999999 9999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 91 KQILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 91 ~~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
++||++|.+++.+|++++|++.++|..|
T Consensus 102 eqVlqaLi~liN~P~pe~plr~dlA~ey 129 (153)
T KOG0422|consen 102 EQVLQALIALINDPEPEHPLRIDLAEEY 129 (153)
T ss_pred HHHHHHHHHHhcCCCccccchhhHHHHH
Confidence 9999999999999999999999999876
No 15
>KOG0416|consensus
Probab=99.97 E-value=9.6e-33 Score=189.82 Aligned_cols=109 Identities=31% Similarity=0.627 Sum_probs=101.9
Q ss_pred CcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccC-CCeEEccCCCCCCCCCC
Q psy89 8 HHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKP 86 (119)
Q Consensus 8 ~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~W~p 86 (119)
....|.+..+++.+.+|.+.||.+||||||++++++.+|++||++.|+|.|.++||||||++ +|.||++++.. .|+|
T Consensus 18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQ--tWSp 95 (189)
T KOG0416|consen 18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQ--TWSP 95 (189)
T ss_pred cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhh--hhhH
Confidence 44567788888999999999999999999999999999999999999999999999999995 89999999995 9999
Q ss_pred cCCHHHHHHH-HHHHhcCCCCCCCcCHHHHhhc
Q psy89 87 AITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 87 ~~~l~~vl~~-i~~~l~~p~~~~p~n~~aa~~y 118 (119)
.+.+..|+.. |-++|..||+.||+|.|||.+|
T Consensus 96 ~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~ 128 (189)
T KOG0416|consen 96 LYDLVNIFETFLPQLLRYPNPSDPLNGEAAALY 128 (189)
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHH
Confidence 9999999988 5788899999999999999876
No 16
>KOG0420|consensus
Probab=99.97 E-value=1.8e-31 Score=183.71 Aligned_cols=102 Identities=29% Similarity=0.623 Sum_probs=95.0
Q ss_pred eeCCCcee--eEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCCCCcCCHH
Q psy89 14 IGYGHGYP--QRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAITIK 91 (119)
Q Consensus 14 ~~~~~~~~--W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W~p~~~l~ 91 (119)
..++|.+. .+++|. |+.+.|+||.|.|.+.+|+.||++||+|.|+|+||||||+.+|.||++||. ++|+|..+|.
T Consensus 52 ~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILR--edW~P~lnL~ 128 (184)
T KOG0420|consen 52 DSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILR--EDWRPVLNLN 128 (184)
T ss_pred cCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHH--hcCccccchH
Confidence 44555544 999999 999999999999999999999999999999999999999999999999998 4999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcCHHHHhhc
Q psy89 92 QILLGIQDLLNEPNIKDPAQAEAYTIY 118 (119)
Q Consensus 92 ~vl~~i~~~l~~p~~~~p~n~~aa~~y 118 (119)
+|+-+|+.+|.+|+++||+|.|||+.+
T Consensus 129 sIi~GL~~LF~epn~eDpLN~eAA~~l 155 (184)
T KOG0420|consen 129 SIIYGLQFLFLEPNPEDPLNKEAAAVL 155 (184)
T ss_pred HHHHHHHHHhccCCCcccccHHHHHHH
Confidence 999999999999999999999999863
No 17
>KOG0423|consensus
Probab=99.96 E-value=3e-30 Score=178.22 Aligned_cols=110 Identities=29% Similarity=0.633 Sum_probs=102.5
Q ss_pred CCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCCC
Q psy89 6 QNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85 (119)
Q Consensus 6 ~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W~ 85 (119)
+...+.|.+.++|+...++.|.||.||||++|.|+.++.+..+||.+||+-.|+|+||||||-.+|.||.+.|.. +|.
T Consensus 26 PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKk--DW~ 103 (223)
T KOG0423|consen 26 PPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKK--DWN 103 (223)
T ss_pred CCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhc--ccC
Confidence 334444556677999999999999999999999999999999999999999999999999999999999999985 999
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCCcCHHHHhh
Q psy89 86 PAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 117 (119)
Q Consensus 86 p~~~l~~vl~~i~~~l~~p~~~~p~n~~aa~~ 117 (119)
|.++|+.||+.|.++|..|++++.+|+||.++
T Consensus 104 p~LGirHvLltikCLLI~PnPESALNEeAGkm 135 (223)
T KOG0423|consen 104 PSLGIRHVLLTIKCLLIEPNPESALNEEAGKM 135 (223)
T ss_pred cccchhhHhhhhheeeecCChHHHHhHHHHHH
Confidence 99999999999999999999999999999875
No 18
>KOG0427|consensus
Probab=99.93 E-value=9.2e-26 Score=149.72 Aligned_cols=105 Identities=24% Similarity=0.567 Sum_probs=93.7
Q ss_pred cCCCcccEEeeC-CCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCc-ccccccCCCeEEccCCCCCC
Q psy89 5 TQNHHLGLRIGY-GHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FHPNVYPSGTVCLSLLDEEK 82 (119)
Q Consensus 5 ~~~~~~~v~~~~-~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~ 82 (119)
|.+++.|+...- +|+-+|.+.+.|-+||.|+|..|.+.+.||+.||++.|+|.|..++ .||+|+++|.||+++|.+
T Consensus 28 q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d-- 105 (161)
T KOG0427|consen 28 QNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYD-- 105 (161)
T ss_pred hcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecc--
Confidence 346788888664 5789999999999999999999999999999999999999999885 999999999999999995
Q ss_pred CCCCcCCHHHHHHHHHHHhcC-CCCCCCcC
Q psy89 83 DWKPAITIKQILLGIQDLLNE-PNIKDPAQ 111 (119)
Q Consensus 83 ~W~p~~~l~~vl~~i~~~l~~-p~~~~p~n 111 (119)
+|+|++++.+|.++|.+||++ .....|.+
T Consensus 106 ~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 106 SWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 999999999999999999975 44444443
No 19
>KOG0894|consensus
Probab=99.91 E-value=7e-24 Score=150.94 Aligned_cols=96 Identities=26% Similarity=0.517 Sum_probs=84.7
Q ss_pred cCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCC--cccccccCCCeEEccCCCCC-
Q psy89 5 TQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--LFHPNVYPSGTVCLSLLDEE- 81 (119)
Q Consensus 5 ~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~--i~HpnV~~~G~vcl~~l~~~- 81 (119)
++-+++--...++|+++||.++.||++|||+||.|+.+|.||++||++||.|++.|+ .|-+| -++|+++-+.+
T Consensus 20 ~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRLCLSiSDfHP 95 (244)
T KOG0894|consen 20 DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRLCLSISDFHP 95 (244)
T ss_pred CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceEEEeccccCc
Confidence 344555555778899999999999999999999999999999999999999999998 56655 79999998764
Q ss_pred CCCCCcCCHHHHHHHHHHHhcCC
Q psy89 82 KDWKPAITIKQILLGIQDLLNEP 104 (119)
Q Consensus 82 ~~W~p~~~l~~vl~~i~~~l~~p 104 (119)
+.|+|++++.+||.+|.++|.+-
T Consensus 96 dsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 96 DSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred CcCCCcccHHHHHHHHHHHHhcC
Confidence 89999999999999999999763
No 20
>KOG0428|consensus
Probab=99.79 E-value=4.2e-19 Score=128.97 Aligned_cols=96 Identities=22% Similarity=0.441 Sum_probs=81.5
Q ss_pred cCCCcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCC-CC
Q psy89 5 TQNHHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEE-KD 83 (119)
Q Consensus 5 ~~~~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~-~~ 83 (119)
++..+..-..-++|+|+|+++|.||.||-||||+|+.+|.||.+||++||.+..+|+--. ..-+-+||+++-..+ +.
T Consensus 25 ~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR--FE~nkKiCLSISgyHPEt 102 (314)
T KOG0428|consen 25 DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR--FEVNKKICLSISGYHPET 102 (314)
T ss_pred CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc--eeeCceEEEEecCCCccc
Confidence 444555555678999999999999999999999999999999999999999999987211 122368999988753 89
Q ss_pred CCCcCCHHHHHHHHHHHhc
Q psy89 84 WKPAITIKQILLGIQDLLN 102 (119)
Q Consensus 84 W~p~~~l~~vl~~i~~~l~ 102 (119)
|.|++++++.|++|..+|-
T Consensus 103 WqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 103 WQPSWSIRTALLALIGFMP 121 (314)
T ss_pred cCcchhHHHHHHHHHcccc
Confidence 9999999999999999984
No 21
>KOG0429|consensus
Probab=99.75 E-value=7.3e-18 Score=120.72 Aligned_cols=108 Identities=20% Similarity=0.408 Sum_probs=92.9
Q ss_pred CcccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCC--CCCeeEEcCCcccccccC-CCeEEccCCCCCCCC
Q psy89 8 HHLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPS--TPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDW 84 (119)
Q Consensus 8 ~~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~--~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~W 84 (119)
.++.|.++..|-+.|.++|++..|- |.||+|+|.|.+|.+||. .-|+|.|.+.++||+|.+ ++.+|++-.-. .|
T Consensus 37 ~gIyviPSyan~l~WFGViFvr~Gi-yaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~--eW 113 (258)
T KOG0429|consen 37 DGIYVIPSYANKLLWFGVIFVRKGI-YAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFP--EW 113 (258)
T ss_pred CceEEcccccccceEEEEEEEeccc-ccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhh--hh
Confidence 3444444445999999999987765 999999999999999995 779999999999999996 78999977665 69
Q ss_pred CCc-CCHHHHHHHHHHHhcCCCCCCC--cCHHHHhhc
Q psy89 85 KPA-ITIKQILLGIQDLLNEPNIKDP--AQAEAYTIY 118 (119)
Q Consensus 85 ~p~-~~l~~vl~~i~~~l~~p~~~~p--~n~~aa~~y 118 (119)
+-. .+|.+||..||.+|++|+.+.+ .|+|||.+|
T Consensus 114 Rk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~ 150 (258)
T KOG0429|consen 114 RKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY 150 (258)
T ss_pred hccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence 776 6999999999999999998876 599999886
No 22
>KOG0895|consensus
Probab=99.65 E-value=1e-16 Score=134.34 Aligned_cols=94 Identities=32% Similarity=0.595 Sum_probs=84.1
Q ss_pred cccEEeeCCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCC--cccccccCCCeEEccCCCC-----C
Q psy89 9 HLGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--LFHPNVYPSGTVCLSLLDE-----E 81 (119)
Q Consensus 9 ~~~v~~~~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~--i~HpnV~~~G~vcl~~l~~-----~ 81 (119)
.+-|...++-+-...++|.|+.||||+.|.|.|++.||++||..||.|...+. .++||.+++|+||+++|.. .
T Consensus 870 ~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~ 949 (1101)
T KOG0895|consen 870 GIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGN 949 (1101)
T ss_pred ceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCc
Confidence 34444556767778899999999999999999999999999999999999986 6899999999999999985 4
Q ss_pred CCCCCcCCHHHHHHHHHHHhc
Q psy89 82 KDWKPAITIKQILLGIQDLLN 102 (119)
Q Consensus 82 ~~W~p~~~l~~vl~~i~~~l~ 102 (119)
+-|+|..++.+||.+||.+..
T Consensus 950 e~w~~~s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 950 EVWNPSSSILQVLVSIQGLVL 970 (1101)
T ss_pred cccCcchhHHHHHHHhhhhhc
Confidence 789999999999999999984
No 23
>KOG0896|consensus
Probab=99.57 E-value=7.7e-15 Score=97.90 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred cccEEeeCC-CceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccC-CCeEEccCCCCCCCCCC
Q psy89 9 HLGLRIGYG-HGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKP 86 (119)
Q Consensus 9 ~~~v~~~~~-~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~W~p 86 (119)
++|++-++| -+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++.-..|+. +|.|.-..+..-+.|..
T Consensus 27 s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~ 106 (138)
T KOG0896|consen 27 SWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQR 106 (138)
T ss_pred eccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccc
Confidence 344444444 4689999999999999999999999999999999999999999999999985 66766544443359999
Q ss_pred cCCHHHHHHHHHHHhcC
Q psy89 87 AITIKQILLGIQDLLNE 103 (119)
Q Consensus 87 ~~~l~~vl~~i~~~l~~ 103 (119)
.++++.+|..++.+|..
T Consensus 107 ~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 107 SYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cchhhHHHHhhhHHHHH
Confidence 99999999999876643
No 24
>KOG0895|consensus
Probab=99.45 E-value=3.7e-13 Score=113.31 Aligned_cols=98 Identities=31% Similarity=0.607 Sum_probs=87.2
Q ss_pred CCCcccEEeeC--CCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCC---cccccccCCCeEEccCCCC
Q psy89 6 QNHHLGLRIGY--GHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP---LFHPNVYPSGTVCLSLLDE 80 (119)
Q Consensus 6 ~~~~~~v~~~~--~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~---i~HpnV~~~G~vcl~~l~~ 80 (119)
+..+.|+.+.+ ..+....+.|.||.||||++|.|.|.|.+|..||..||.+.++|. .+.||.+.+|+||+++|..
T Consensus 296 kdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgT 375 (1101)
T KOG0895|consen 296 KDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGT 375 (1101)
T ss_pred ccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeee
Confidence 34666677665 478999999999999999999999999999999999999999987 7899999999999999985
Q ss_pred -----CCCCCCc-CCHHHHHHHHHHHhcC
Q psy89 81 -----EKDWKPA-ITIKQILLGIQDLLNE 103 (119)
Q Consensus 81 -----~~~W~p~-~~l~~vl~~i~~~l~~ 103 (119)
.+.|++. .++.++|.+||.++.+
T Consensus 376 wtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 376 WTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cccccccCCCccccchhhhhhhhhhhhcc
Confidence 3678888 8999999999999964
No 25
>KOG0897|consensus
Probab=98.73 E-value=9.1e-09 Score=67.17 Aligned_cols=73 Identities=29% Similarity=0.558 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCCCCCCeeEEcCCc-ccccccCCCeEEccCCCCCCCCCCcCCHHHHHHHHHHHhcCCC--CCCCcCH
Q psy89 39 YKLRMIFKDDYPSTPPKCKFEPPL-FHPNVYPSGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNEPN--IKDPAQA 112 (119)
Q Consensus 39 f~~~i~~p~~yP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l~~p~--~~~p~n~ 112 (119)
.-+.+.|+.+||+.||.+|...++ -.-.|-.+|+||+.+|.. +.|+.+++++.+++++.+++..-. .+.+++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~-qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTK-QGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHcc-ccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 556788999999999999987663 444555789999999998 799999999999999999997644 4445543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.71 E-value=5.7e-08 Score=65.66 Aligned_cols=67 Identities=34% Similarity=0.711 Sum_probs=58.9
Q ss_pred CCCeEEEEEEeCCCCCCCCCeeEEcCCc---ccccccCCCeEEc---cCCCCCCCCCCcCCHHHHHHHHHHHhcC
Q psy89 35 ESGSYKLRMIFKDDYPSTPPKCKFEPPL---FHPNVYPSGTVCL---SLLDEEKDWKPAITIKQILLGIQDLLNE 103 (119)
Q Consensus 35 egg~f~~~i~~p~~yP~~pP~v~f~t~i---~HpnV~~~G~vcl---~~l~~~~~W~p~~~l~~vl~~i~~~l~~ 103 (119)
.|+.+.++|.+|+.||..||.|....+- .-|||+.+|.+|+ ...- +.|.|...+.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~--D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL--DPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc--CccCHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999988653 6799999999999 5554 4899999999999999999974
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.55 E-value=1.3e-07 Score=63.01 Aligned_cols=77 Identities=18% Similarity=0.415 Sum_probs=54.2
Q ss_pred ceeeEEEEeCCCCCCCCCCeE--EEEEEeCCCCCCCCCeeEEcCC-----cccccccCCCeEEccCCCCCCCCCC-cCCH
Q psy89 19 GYPQRCGFKNPTNTPWESGSY--KLRMIFKDDYPSTPPKCKFEPP-----LFHPNVYPSGTVCLSLLDEEKDWKP-AITI 90 (119)
Q Consensus 19 ~~~W~~~i~gp~~tpyegg~f--~~~i~~p~~yP~~pP~v~f~t~-----i~HpnV~~~G~vcl~~l~~~~~W~p-~~~l 90 (119)
++...++|. -.|+|..| .+.|.+|++||.+||.|..... .-+.+|+++|+|.+..|. +|.. ..+|
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~---~W~~~~s~L 104 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ---NWNPPSSNL 104 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH---T--TTTS-H
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc---cCCCCCCCH
Confidence 445555554 35777777 4678899999999999987632 124499999999999996 8988 7899
Q ss_pred HHHHHHHHHHhc
Q psy89 91 KQILLGIQDLLN 102 (119)
Q Consensus 91 ~~vl~~i~~~l~ 102 (119)
.+++..|++.|.
T Consensus 105 ~~lv~~l~~~F~ 116 (121)
T PF05743_consen 105 VDLVQELQAVFS 116 (121)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHh
Confidence 999999988875
No 28
>KOG2391|consensus
Probab=97.85 E-value=0.00011 Score=56.40 Aligned_cols=79 Identities=24% Similarity=0.518 Sum_probs=60.8
Q ss_pred ceeeEEEEeCCCCCCCCCCeEE--EEEEeCCCCCCCCCeeEEcCC-----cccccccCCCeEEccCCCCCCCCCCc-CCH
Q psy89 19 GYPQRCGFKNPTNTPWESGSYK--LRMIFKDDYPSTPPKCKFEPP-----LFHPNVYPSGTVCLSLLDEEKDWKPA-ITI 90 (119)
Q Consensus 19 ~~~W~~~i~gp~~tpyegg~f~--~~i~~p~~yP~~pP~v~f~t~-----i~HpnV~~~G~vcl~~l~~~~~W~p~-~~l 90 (119)
.+.-.++|. ++|.|..|. +.|.+.+.||..||.|..... -.|.+|+.+|+|.+..|. +|.+. +.|
T Consensus 52 ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh---~W~~pssdL 124 (365)
T KOG2391|consen 52 LLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH---NWDPPSSDL 124 (365)
T ss_pred hhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc---cCCCccchH
Confidence 444444544 567776655 677899999999999976521 248999999999999997 89655 788
Q ss_pred HHHHHHHHHHhcCC
Q psy89 91 KQILLGIQDLLNEP 104 (119)
Q Consensus 91 ~~vl~~i~~~l~~p 104 (119)
..++.-|.+.|.++
T Consensus 125 v~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 125 VGLIQELIAAFSED 138 (365)
T ss_pred HHHHHHHHHHhcCC
Confidence 88988898888763
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.57 E-value=0.24 Score=33.09 Aligned_cols=90 Identities=13% Similarity=0.276 Sum_probs=55.3
Q ss_pred ccEEeeCCCceeeEEEEeC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeE--EccCCCC-----
Q psy89 10 LGLRIGYGHGYPQRCGFKN--PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTV--CLSLLDE----- 80 (119)
Q Consensus 10 ~~v~~~~~~~~~W~~~i~g--p~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~v--cl~~l~~----- 80 (119)
+.++...+--..|-+ |.| -+.+.|.+..-.+.|.+|+.||..+|.+.+..+-.... ..|.+ |-+....
T Consensus 14 ~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 14 LRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred ceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCee
Confidence 334433344455555 443 24445999999999999999999999887765421100 01122 2221111
Q ss_pred -------CCCCCCcC-CHHHHHHHHHHHhc
Q psy89 81 -------EKDWKPAI-TIKQILLGIQDLLN 102 (119)
Q Consensus 81 -------~~~W~p~~-~l~~vl~~i~~~l~ 102 (119)
...|+|.. +|.+.|..|...|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 25788875 88999988887764
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.30 E-value=0.026 Score=39.46 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=48.7
Q ss_pred EEEEeCCCCCCCCCeeEEcCCc---ccccccCC-----CeEEccCCCCCCCCCCcCCHHHHHHHHHHHhc
Q psy89 41 LRMIFKDDYPSTPPKCKFEPPL---FHPNVYPS-----GTVCLSLLDEEKDWKPAITIKQILLGIQDLLN 102 (119)
Q Consensus 41 ~~i~~p~~yP~~pP~v~f~t~i---~HpnV~~~-----G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l~ 102 (119)
+.|.++.+||..+|.|.++.+. .+|+++.. ..+|+---.- ..|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~-~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW-SEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH-HHhhhccCHHHHHHHHHHHHH
Confidence 5689999999999988777552 25777755 6799965543 589999999999999999884
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.80 E-value=0.0076 Score=41.20 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=30.3
Q ss_pred ceeeEEEEeCCCCCCCCC--------Ce--EEEEEEeCCCCCCCCCeeEEcCCc-ccccccCCCeEEccCCCCCCCC---
Q psy89 19 GYPQRCGFKNPTNTPWES--------GS--YKLRMIFKDDYPSTPPKCKFEPPL-FHPNVYPSGTVCLSLLDEEKDW--- 84 (119)
Q Consensus 19 ~~~W~~~i~gp~~tpyeg--------g~--f~~~i~~p~~yP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~~W--- 84 (119)
...|.-.=.-+.||-|.| .. |.+++.+|..||..+|.+..-.-- --.-.+..|+||++.--. .-|
T Consensus 47 DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFk-PLWakN 125 (161)
T PF08694_consen 47 DNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFK-PLWAKN 125 (161)
T ss_dssp T---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHH-HHHHCT
T ss_pred cCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccc-hhhhhc
Confidence 344544445566666655 33 445566799999999999763210 001223579999976432 134
Q ss_pred CCcCCHHHH
Q psy89 85 KPAITIKQI 93 (119)
Q Consensus 85 ~p~~~l~~v 93 (119)
.|.++|...
T Consensus 126 ~PkfGIaHa 134 (161)
T PF08694_consen 126 VPKFGIAHA 134 (161)
T ss_dssp TTT--HHHH
T ss_pred CCchhHHHH
Confidence 344666544
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.79 E-value=0.062 Score=34.13 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred ceeeEEEEeC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCC
Q psy89 19 GYPQRCGFKN--PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 61 (119)
Q Consensus 19 ~~~W~~~i~g--p~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (119)
.....+.+.+ ...+.-....+.+.+.||++||..+|.+...+.
T Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 29 PPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred CCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3445555521 233333456899999999999999999987654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.38 E-value=0.11 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCeEEEEEEeCCCCCCCCCeeEEcCC
Q psy89 36 SGSYKLRMIFKDDYPSTPPKCKFEPP 61 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (119)
.-.+.+.+.+|++||..+|.+.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34688999999999999999987653
No 34
>KOG3357|consensus
Probab=88.47 E-value=0.59 Score=31.63 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=43.9
Q ss_pred eCCCceeeEEEEeCCCCCCCCCC----------eEEEEEEeCCCCCCCCCeeEEcCCc-ccccccCCCeEEccCCCCCCC
Q psy89 15 GYGHGYPQRCGFKNPTNTPWESG----------SYKLRMIFKDDYPSTPPKCKFEPPL-FHPNVYPSGTVCLSLLDEEKD 83 (119)
Q Consensus 15 ~~~~~~~W~~~i~gp~~tpyegg----------~f~~~i~~p~~yP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~~ 83 (119)
.+++-..|.-.=..+.||-|-|. .|.+++.+|-.||..+|.+..-.-- ----.+..|+||+..--. .-
T Consensus 46 nk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfk-pl 124 (167)
T KOG3357|consen 46 NKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFK-PL 124 (167)
T ss_pred CcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccc-hh
Confidence 34556667666677889988874 3445556799999999998652100 001123569999954322 25
Q ss_pred CCCc
Q psy89 84 WKPA 87 (119)
Q Consensus 84 W~p~ 87 (119)
|...
T Consensus 125 warn 128 (167)
T KOG3357|consen 125 WARN 128 (167)
T ss_pred hhhc
Confidence 6443
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=78.14 E-value=8.6 Score=29.99 Aligned_cols=61 Identities=26% Similarity=0.547 Sum_probs=43.0
Q ss_pred CCCCCeEEEEEEeCCCCCCCCCeeEEc-CCcccccccCCCeEEccCCCCCCCCCCc--CCHHHHHHHHHHHh
Q psy89 33 PWESGSYKLRMIFKDDYPSTPPKCKFE-PPLFHPNVYPSGTVCLSLLDEEKDWKPA--ITIKQILLGIQDLL 101 (119)
Q Consensus 33 pyegg~f~~~i~~p~~yP~~pP~v~f~-t~i~HpnV~~~G~vcl~~l~~~~~W~p~--~~l~~vl~~i~~~l 101 (119)
||.|...+-+|.|...+|..||.+.|- ..-|+|.... +..|. +|.+. ..+..++..|...-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L~---~Wd~~dp~~Ll~li~EL~~~Y 124 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSLV---NWDPSDPNCLLNLISELRQLY 124 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchhh---cCCCCCchHHHHHHHHHHHHH
Confidence 588888999999999999999999996 3347774321 23343 89776 45556666555443
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=74.99 E-value=5.5 Score=27.93 Aligned_cols=37 Identities=32% Similarity=0.574 Sum_probs=22.6
Q ss_pred CCccc---ccccCCCeEEccCCCCCCCCCCcCCHHHHHHHHHHHh
Q psy89 60 PPLFH---PNVYPSGTVCLSLLDEEKDWKPAITIKQILLGIQDLL 101 (119)
Q Consensus 60 t~i~H---pnV~~~G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l 101 (119)
|++|| +||+.+|+||...... |.....+.+..+...|
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~F 129 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAF 129 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHH
Confidence 44566 5999999999976442 2333344455554444
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=65.82 E-value=15 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCccc---ccccCCCeEEccCCCCCCCCCCc-CCHHHHHHHHHHHhcCCCCCC
Q psy89 60 PPLFH---PNVYPSGTVCLSLLDEEKDWKPA-ITIKQILLGIQDLLNEPNIKD 108 (119)
Q Consensus 60 t~i~H---pnV~~~G~vcl~~l~~~~~W~p~-~~l~~vl~~i~~~l~~p~~~~ 108 (119)
|++|| .||+++|+||+.... .|. .++.+ +....+.|.+-.+.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~S~FTH 177 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFSSRFTH 177 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhCCcccC
Confidence 34555 489999999996543 233 45666 777777775444333
No 38
>KOG4018|consensus
Probab=63.59 E-value=7.2 Score=28.52 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=26.0
Q ss_pred CceeeEEEEeCCCCC--CCCCCeEEEEEEeCCCCCCCCCeeEE
Q psy89 18 HGYPQRCGFKNPTNT--PWESGSYKLRMIFKDDYPSTPPKCKF 58 (119)
Q Consensus 18 ~~~~W~~~i~gp~~t--pyegg~f~~~i~~p~~yP~~pP~v~f 58 (119)
+.....+.|.-..|. -+.| .+.+.+.++++||..+|-+.+
T Consensus 29 ~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 29 DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 333455566422222 1222 788999999999999999943
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=61.79 E-value=13 Score=25.18 Aligned_cols=24 Identities=38% Similarity=0.862 Sum_probs=21.7
Q ss_pred CCeEEEEEEeCCCCC-CCCCeeEEc
Q psy89 36 SGSYKLRMIFKDDYP-STPPKCKFE 59 (119)
Q Consensus 36 gg~f~~~i~~p~~yP-~~pP~v~f~ 59 (119)
.|.|.|.-.+|-.|| .+||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 388999999999999 999999875
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=61.44 E-value=13 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCCCCCCCeeEEcC
Q psy89 36 SGSYKLRMIFKDDYPSTPPKCKFEP 60 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~~pP~v~f~t 60 (119)
.|.|.|+-.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 3889999999999999999998863
No 41
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=53.74 E-value=14 Score=24.93 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=17.0
Q ss_pred eCCCceeeEEEEeCCCCCCC
Q psy89 15 GYGHGYPQRCGFKNPTNTPW 34 (119)
Q Consensus 15 ~~~~~~~W~~~i~gp~~tpy 34 (119)
+|.|.-.|.+++.|++||+.
T Consensus 43 qPGd~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIR 62 (139)
T ss_pred cCCCCcceEEEEECCCCcce
Confidence 46788889999999999975
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.97 E-value=23 Score=24.50 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=21.0
Q ss_pred CeEEEEEEeCCCCC-----CCCCeeEEc
Q psy89 37 GSYKLRMIFKDDYP-----STPPKCKFE 59 (119)
Q Consensus 37 g~f~~~i~~p~~yP-----~~pP~v~f~ 59 (119)
|.|.|+-.+|--|| .+||.|.|.
T Consensus 73 G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 73 GRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 88999999999999 899999875
No 43
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=50.94 E-value=41 Score=25.31 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCceeeEEEEeCCCCCCCCC---CeEEEEEEeC-----CCCCCCCCeeEEcCCc
Q psy89 17 GHGYPQRCGFKNPTNTPWES---GSYKLRMIFK-----DDYPSTPPKCKFEPPL 62 (119)
Q Consensus 17 ~~~~~W~~~i~gp~~tpyeg---g~f~~~i~~p-----~~yP~~pP~v~f~t~i 62 (119)
.|..-|.+....-+.-..+| ..|+.++.+. .+-||++|+|..+++-
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ 153 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQ 153 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecc
Confidence 36667888877655555555 5566666664 7899999999999883
No 44
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=48.96 E-value=41 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=18.5
Q ss_pred CCCeEEEEEEeCCCCCCCCCeeEEcCC
Q psy89 35 ESGSYKLRMIFKDDYPSTPPKCKFEPP 61 (119)
Q Consensus 35 egg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (119)
||.-+.|...-|..|| .|.|.+.+.
T Consensus 17 eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 17 EGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred cCCCEEEEecCCCCCC--CCEEEEECC
Confidence 5666777777788888 588888754
No 45
>KOG0177|consensus
Probab=43.19 E-value=5.9 Score=28.49 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=26.3
Q ss_pred CeEEccCCCCCCCCCCcCCHHHHHHHHHHHhcC
Q psy89 71 GTVCLSLLDEEKDWKPAITIKQILLGIQDLLNE 103 (119)
Q Consensus 71 G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l~~ 103 (119)
+..|+++++. .|+|.+|.++.+.-++.++.+
T Consensus 136 ~~f~~sIlDr--~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 136 SYFCLSILDR--YYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhHHHHHh--hhCCCCCHHHHHHHHHHHHHH
Confidence 5699999995 999999999988877777644
No 46
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=42.78 E-value=14 Score=28.17 Aligned_cols=63 Identities=21% Similarity=0.476 Sum_probs=40.0
Q ss_pred CCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCCcccccccCCCeEEccCCCCCCCCCC-cCCHHHHHH
Q psy89 17 GHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKP-AITIKQILL 95 (119)
Q Consensus 17 ~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~W~p-~~~l~~vl~ 95 (119)
+++....+.+..- +..-.++|.++.+||.++|.+..--++ ... ..|.+ ..++.+++.
T Consensus 123 ~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-------------~~~---~~w~~~~ssL~~v~~ 180 (291)
T PF09765_consen 123 DDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-------------PFS---LSWSPSQSSLKDVVQ 180 (291)
T ss_dssp CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--------------HH---HHHHCHT-SHHHHHH
T ss_pred CCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-------------chh---hhhcccccCHHHHHH
Confidence 3555666666622 245678899999999999986432221 111 26777 678888877
Q ss_pred HHHHHh
Q psy89 96 GIQDLL 101 (119)
Q Consensus 96 ~i~~~l 101 (119)
..+..+
T Consensus 181 qF~~~l 186 (291)
T PF09765_consen 181 QFQEAL 186 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777666
No 47
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=42.42 E-value=37 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCeEEEEEEeCCCCCC-----CCCeeEEc
Q psy89 36 SGSYKLRMIFKDDYPS-----TPPKCKFE 59 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~-----~pP~v~f~ 59 (119)
.|.|.|+-..|-.||. +||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 88887664
No 48
>KOG0662|consensus
Probab=40.62 E-value=33 Score=25.14 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=43.3
Q ss_pred CCCCeeEEcCCccccccc--CCCeEEccCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCC
Q psy89 51 STPPKCKFEPPLFHPNVY--PSGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNEPNIKD 108 (119)
Q Consensus 51 ~~pP~v~f~t~i~HpnV~--~~G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l~~p~~~~ 108 (119)
.+||.|.|-.+.|...|+ +-|-|-..+-..+..-.|+..+..-|..|..++..|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 379999999999998887 4564444554432344788899999999999998877654
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.52 E-value=36 Score=26.59 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCCCCCCCeeEEcC
Q psy89 38 SYKLRMIFKDDYPSTPPKCKFEP 60 (119)
Q Consensus 38 ~f~~~i~~p~~yP~~pP~v~f~t 60 (119)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 46677889999999999999865
No 50
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=39.25 E-value=92 Score=19.14 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=27.0
Q ss_pred eeeEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEcCC
Q psy89 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 61 (119)
Q Consensus 20 ~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (119)
.+|.+-|.|+.+.--..-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 58999999998864444566788888888886 55555544
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=39.18 E-value=46 Score=23.67 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=18.8
Q ss_pred CeEEEEEEeCCCCCC-----CCCeeEEc
Q psy89 37 GSYKLRMIFKDDYPS-----TPPKCKFE 59 (119)
Q Consensus 37 g~f~~~i~~p~~yP~-----~pP~v~f~ 59 (119)
|.|.|+-.+|-.||. +||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 77776553
No 52
>KOG0309|consensus
Probab=37.51 E-value=1.4e+02 Score=26.37 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=26.1
Q ss_pred eeeEEEEeCCCCCCCCCCe-EEEEEEeCCCCCC-CCCeeEEcCC
Q psy89 20 YPQRCGFKNPTNTPWESGS-YKLRMIFKDDYPS-TPPKCKFEPP 61 (119)
Q Consensus 20 ~~W~~~i~gp~~tpyegg~-f~~~i~~p~~yP~-~pP~v~f~t~ 61 (119)
..-.+.+.+|--.. .|-+ .++.|.||.+||. .+|+++|..+
T Consensus 449 Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34455566654332 3323 3677889999999 5688888643
No 53
>KOG4445|consensus
Probab=37.40 E-value=46 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCCCCCCCeeEEcCC
Q psy89 37 GSYKLRMIFKDDYPSTPPKCKFEPP 61 (119)
Q Consensus 37 g~f~~~i~~p~~yP~~pP~v~f~t~ 61 (119)
-.+.+.+..++.||...|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677888899999999999988754
No 54
>KOG1047|consensus
Probab=35.19 E-value=42 Score=28.19 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEEEeCCCCCC---CCCeeEEcCC
Q psy89 32 TPWESGSYKLRMIFKDDYPS---TPPKCKFEPP 61 (119)
Q Consensus 32 tpyegg~f~~~i~~p~~yP~---~pP~v~f~t~ 61 (119)
+||.=|.|.+ +.+|+.||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677788877 567999999 6799999987
No 55
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=28.78 E-value=79 Score=24.15 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=13.1
Q ss_pred CeEEEEEEeCCCCC
Q psy89 37 GSYKLRMIFKDDYP 50 (119)
Q Consensus 37 g~f~~~i~~p~~yP 50 (119)
|.|.|+-..|..||
T Consensus 181 G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 181 GRYRARSIVPSGYG 194 (285)
T ss_pred CCEEEEEECCCCCc
Confidence 88999999999997
No 56
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=28.66 E-value=73 Score=19.09 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=24.3
Q ss_pred cccCCCeEEccCCCCCCCCCCcCCHHHHHHHHHHHhcC
Q psy89 66 NVYPSGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNE 103 (119)
Q Consensus 66 nV~~~G~vcl~~l~~~~~W~p~~~l~~vl~~i~~~l~~ 103 (119)
-|+++|.|-++.+.. -=-.++|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~--v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGP--VKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEE--EE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccce--EEECCCCHHHHHHHHHHHHHH
Confidence 367899999999874 334568999988888887765
No 57
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=26.03 E-value=96 Score=23.60 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=14.0
Q ss_pred CCeEEEEEEeCCCCCC
Q psy89 36 SGSYKLRMIFKDDYPS 51 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~ 51 (119)
.|.|.|+-..|.-||.
T Consensus 172 ~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 172 DGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCCEEEEEECCCCcCC
Confidence 4889999999999993
No 58
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.44 E-value=1.1e+02 Score=22.49 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=20.1
Q ss_pred CCeEEEEEEeCCCCCC-------CCCeeEEc
Q psy89 36 SGSYKLRMIFKDDYPS-------TPPKCKFE 59 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~-------~pP~v~f~ 59 (119)
.|.|.|+-..|--||. +||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 78888774
No 59
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.42 E-value=1.1e+02 Score=23.43 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=13.4
Q ss_pred CCeEEEEEEeCCCCC
Q psy89 36 SGSYKLRMIFKDDYP 50 (119)
Q Consensus 36 gg~f~~~i~~p~~yP 50 (119)
.|.|.|+-..|..||
T Consensus 176 ~G~y~F~TI~P~~Yp 190 (282)
T cd03460 176 DGRYRFRSIMPSGYG 190 (282)
T ss_pred CCCEEEEEECCCCCc
Confidence 388999999999997
No 60
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.29 E-value=1.1e+02 Score=23.36 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=13.2
Q ss_pred CCeEEEEEEeCCCCC
Q psy89 36 SGSYKLRMIFKDDYP 50 (119)
Q Consensus 36 gg~f~~~i~~p~~yP 50 (119)
.|.|.|+-..|..||
T Consensus 184 dG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 184 EGRFEITTMQPAPYQ 198 (281)
T ss_pred CCCEEEEEECCCCcC
Confidence 488999999998887
No 61
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=23.81 E-value=1.2e+02 Score=22.96 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEEEeCCCCCCCC--CeeEEcC
Q psy89 32 TPWESGSYKLRMIFKDDYPSTP--PKCKFEP 60 (119)
Q Consensus 32 tpyegg~f~~~i~~p~~yP~~p--P~v~f~t 60 (119)
+.+.|..|++.|..|.+||-.. |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 5678999999999999999988 9998875
No 62
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=23.67 E-value=1.1e+02 Score=22.35 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=20.2
Q ss_pred CCeEEEEEEeCCCCCC-------CCCeeEEc
Q psy89 36 SGSYKLRMIFKDDYPS-------TPPKCKFE 59 (119)
Q Consensus 36 gg~f~~~i~~p~~yP~-------~pP~v~f~ 59 (119)
.|.|.|+-..|-.||. +||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999976 88888773
No 63
>KOG4278|consensus
Probab=23.20 E-value=98 Score=27.10 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCceeeEEEEeCCCCCCCCCCeEEEEEEeCCCCC-CCCCeeEEcCC--cc-cccccCCCeEEccC
Q psy89 16 YGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYP-STPPKCKFEPP--LF-HPNVYPSGTVCLSL 77 (119)
Q Consensus 16 ~~~~~~W~~~i~gp~~tpyegg~f~~~i~~p~~yP-~~pP~v~f~t~--i~-HpnV~~~G~vcl~~ 77 (119)
++++-+..+.+. |||.+|+.+|.-..+-- +..-..+|.|- .. |.-+-.+|-||.=.
T Consensus 182 EsSpgQ~sISlR------yeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLittLh 241 (1157)
T KOG4278|consen 182 ESSPGQYSISLR------YEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITTLH 241 (1157)
T ss_pred cCCCcceeEEEE------ecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEeee
Confidence 446677777777 99999999998765432 22334455553 44 44455788888743
No 64
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=21.95 E-value=1.3e+02 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.4
Q ss_pred CCeEEEEEEeCCCCC
Q psy89 36 SGSYKLRMIFKDDYP 50 (119)
Q Consensus 36 gg~f~~~i~~p~~yP 50 (119)
.|.|.|+-..|..||
T Consensus 150 ~G~y~F~Ti~P~~Yp 164 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQ 164 (246)
T ss_pred CCCEEEEEECCCCCC
Confidence 488999999999997
No 65
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.70 E-value=92 Score=20.12 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=15.8
Q ss_pred eeeEEEEeCCCCCCCCCCeEEE
Q psy89 20 YPQRCGFKNPTNTPWESGSYKL 41 (119)
Q Consensus 20 ~~W~~~i~gp~~tpyegg~f~~ 41 (119)
.+|.|.|-| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 379999997 44789988866
No 66
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=20.74 E-value=75 Score=21.60 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=24.4
Q ss_pred CCCCeeEEc---CCcccccccCCCeEEccCCCC
Q psy89 51 STPPKCKFE---PPLFHPNVYPSGTVCLSLLDE 80 (119)
Q Consensus 51 ~~pP~v~f~---t~i~HpnV~~~G~vcl~~l~~ 80 (119)
.+||.|.+- ..-.|+.|.++|+.|+++|..
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 478888774 346789999999999999974
Done!