RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy89
(119 letters)
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 162 bits (412), Expect = 6e-53
Identities = 48/96 (50%), Positives = 66/96 (68%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
G T W G Y + + + ++YPS PPK KF +HPNVYPSGT+CLS+L+E++
Sbjct: 42 EAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 101
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
DW+PAIT+KQI+LG+QDLL+ PN PAQ A+ +
Sbjct: 102 DWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 137
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 160 bits (408), Expect = 3e-52
Identities = 76/96 (79%), Positives = 85/96 (88%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTVCLS+L+E+K
Sbjct: 45 ECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
DW+PAITIKQILLGIQ+LLNEPNI+ PAQAEAYTIY
Sbjct: 105 DWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIY 140
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 159 bits (404), Expect = 1e-51
Identities = 65/96 (67%), Positives = 77/96 (80%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ G T WE G YKL M F ++YP+ PPKC+F PPLFHPNVYPSGTVCLS+L+EE+
Sbjct: 48 KVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE 107
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
WKPAITIKQILLGIQDLL++PNI PAQ EAYT++
Sbjct: 108 GWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMF 143
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 147 bits (372), Expect = 1e-46
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
+ N+ W+ ++L + F +Y PP KF FHPNV P +G C+ LD
Sbjct: 56 EVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP 115
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ W T+ ILL +Q +L+ P +++P EA I
Sbjct: 116 EKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARIL 152
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 145 bits (369), Expect = 3e-46
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
C + P +TP+ G + ++ F DYP +PPK F P + HPN+YP+G VC+S+L
Sbjct: 38 DCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPG 97
Query: 83 D-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
D W P ++++ILL + +L+EPNI+ A +A ++
Sbjct: 98 DDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 143 bits (362), Expect = 3e-45
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +TP+E G+++L + F ++YP+ PP KF +FHPNVY +G +CL +L W P
Sbjct: 43 PADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR--WTPTY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ L N+PN PA EA T++
Sbjct: 101 DVASILTSIQSLFNDPNPASPANVEAATLF 130
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 142 bits (361), Expect = 4e-45
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
T +E+ Y L + D+YP +PP KF+ + V G V + L K+W
Sbjct: 64 QPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNY 123
Query: 89 TIKQILLGI-QDLLNEPNIKDPAQAEAYT 116
TI+ IL+ + Q++L+ N + P E
Sbjct: 124 TIETILISLRQEMLSSANKRLPQPNEGEV 152
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 142 bits (360), Expect = 5e-45
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +TPW+ G++KL + F +DYP+ PP +F +FHPN+Y G++CL +L + W P
Sbjct: 43 PDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIY 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ IL IQ LL +PN PA +EA +Y
Sbjct: 101 DVAAILTSIQSLLCDPNPNSPANSEAARMY 130
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 140 bits (355), Expect = 3e-44
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
P +T +E G + + F DYP +PPK +F +FHPN+YP G VC+S+L
Sbjct: 37 EALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 96
Query: 83 D-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
D W P ++++ILL + +L EPN + A +A ++
Sbjct: 97 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 143
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 126 bits (317), Expect = 3e-38
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD----- 83
P NT +E G +K R+ F DYP +PP +F ++HPN+Y +G VC+S+L D
Sbjct: 47 PPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSG 106
Query: 84 ------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P ++ ILL + LLNEPN PA +A +Y
Sbjct: 107 ELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 121 bits (305), Expect = 2e-36
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD----- 83
P +T +E G +K + F DYP PPK KF ++HPNV +G VC+S+L E +
Sbjct: 57 PPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGY 116
Query: 84 ------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P T++ I++ + +L +PN PA +A +
Sbjct: 117 EKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW 157
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 119 bits (301), Expect = 3e-36
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-GTVCLSLLDEEKDWKPA 87
P ++ E+ Y L + +YP +PPK F + P V P+ G V +DWK A
Sbjct: 49 PPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFH-TLRDWKRA 107
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
T++ +LL ++ + P K Q + +
Sbjct: 108 YTMETLLLDLRKEMATPANKKLRQPKEGETF 138
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 118 bits (299), Expect = 1e-35
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +T +ES YKL + F DYP PP KF P +HPNV SG +CL +L E W +
Sbjct: 48 PKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASY 105
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ ILL +Q LL EPN P A+A ++
Sbjct: 106 DVRTILLSLQSLLGEPNNASPLNAQAADMW 135
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 115 bits (289), Expect = 4e-34
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++SG + YP PPK K E ++HPN+ G VCL++L E DWKP +
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE--DWKPVL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI I+ G+Q L EPN +DP EA +
Sbjct: 101 TINSIIYGLQYLFLEPNPEDPLNKEAAEVL 130
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 115 bits (289), Expect = 6e-34
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++SG + YP PPK K E ++HPN+ G V L++L E DWKP +
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRE--DWKPVL 120
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI I+ G+Q L EPN +DP EA +
Sbjct: 121 TINSIIYGLQYLFLEPNPEDPLNKEAAEVL 150
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 114 bits (287), Expect = 6e-34
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+ G ++++++ D+P++PPK F +FHPNV +G +C+++L DW +
Sbjct: 52 PEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR--DWTAEL 109
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
I+ +LL I+ LL PN + EA +
Sbjct: 110 GIRHVLLTIKCLLIHPNPESALNEEAGRLL 139
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 112 bits (283), Expect = 1e-33
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFE-PPLFHPNVYPSGTVCLSLLDEEKDWKPA 87
NT + + YK+++IF D+YP PP F P H +VY +G +CLS+L + D+ P+
Sbjct: 59 LENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGD--DYNPS 116
Query: 88 ITIKQILLGIQDLLNEPNIK 107
++I ++L I +L+ K
Sbjct: 117 LSISGLILSIISMLSSAKEK 136
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 114 bits (287), Expect = 1e-33
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
T +E YKL + F YP P KF P +HPNV G + L +L E+ W
Sbjct: 69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALY 126
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ ILL IQ LL EPNI P A ++
Sbjct: 127 DVRTILLSIQSLLGEPNIDSPLNTHAAELW 156
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 113 bits (284), Expect = 2e-33
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P P+ ++ LR+ F +YP PP KF ++HPNV +G +CL ++ E WKP
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCT 101
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
Q+L + L+N PNI++P + + +
Sbjct: 102 KTCQVLEALNVLVNRPNIREPLRMDLADLL 131
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 113 bits (284), Expect = 2e-33
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 43 PPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 100
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 101 TISKVLLSICSLLCDPNPDDPLVPEIARIY 130
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 113 bits (284), Expect = 2e-33
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P N P++ G++++ + F +YP PPK F+ ++HPN+ G VCL ++ E WKPA
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPAT 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
Q++ + L+N+P + P +A+ Y
Sbjct: 100 KTDQVIQSLIALVNDPQPEHPLRADLAEEY 129
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 113 bits (285), Expect = 2e-33
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P + GS + F + YP PPK +FHPN+ G VCL++L E DW PA+
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRE--DWSPAL 129
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ I+ G+ L EPN DP +A +
Sbjct: 130 DLQSIITGLLFLFLEPNPNDPLNKDAAKLL 159
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 112 bits (281), Expect = 5e-33
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSG-TVCLSLLDEEKDWKPA 87
P T +E+ Y L++ YP PP +F + V S V + W+ +
Sbjct: 68 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNS 127
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+IK +L ++ L+ Q Y
Sbjct: 128 YSIKVVLQELRRLMMSKENMKLPQPPEGQCY 158
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 111 bits (281), Expect = 5e-33
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L ++ W PA+
Sbjct: 44 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPAL 101
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
I+ +LL IQ LL+ PN DP + +
Sbjct: 102 QIRTVLLSIQALLSAPNPDDPLANDVAEQW 131
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 112 bits (281), Expect = 5e-33
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P+ G + L + F DYP PPK F ++HPN+ G +CL +L ++ W PA+
Sbjct: 60 PEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPAL 117
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E +Y
Sbjct: 118 TISKVLLSISSLLTDPNPDDPLVPEIAHLY 147
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 112 bits (281), Expect = 5e-33
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++CL +L + W PA+
Sbjct: 58 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPAL 115
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 116 TISKVLLSICSLLCDPNPDDPLVPEIARIY 145
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 111 bits (280), Expect = 8e-33
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD--EEKDWKP 86
NTP+E G +KL +I + YP PP+ +F P++HPN+ +G +CL +L + W+P
Sbjct: 43 GANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRP 102
Query: 87 AITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
++ I +L IQ L++EPN DP A+ + +
Sbjct: 103 SLNIATVLTSIQLLMSEPNPDDPLMADISSEF 134
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 110 bits (278), Expect = 1e-32
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P TP+E G+YKL + + YP PPK +F ++HPN+ G +CL +L ++ W PA+
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPAL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
I+ +LL IQ LL+ P DP ++ +
Sbjct: 98 QIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 110 bits (278), Expect = 1e-32
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P +P+E G ++L + DDYP PK +F ++HPN+ G +CL +L W PA+
Sbjct: 44 PEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN--WSPAL 101
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
I+ +LL IQ LL PN DP + +
Sbjct: 102 QIRTVLLSIQALLASPNPNDPLANDVAEDW 131
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 108 bits (273), Expect = 3e-32
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFE-PPLFHPNVYPSGTVCLSLLDEEKDWKPA 87
NT + + YKL++IF DDYP PP F P H +VY +G +CLSLL ++ + P+
Sbjct: 45 LENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPS 102
Query: 88 ITIKQILLGIQDLLNEPNIKD 108
++I ++L I +L+ K
Sbjct: 103 LSISGLVLSIISMLSSAKEKK 123
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 110 bits (278), Expect = 3e-32
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P + +E G + L + F +YP PPK F ++H N+ G +CL +L + W PA+
Sbjct: 87 PPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPAL 144
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL + N DP T Y
Sbjct: 145 TISKVLLSICSLLTDCNPADPLVGSIATQY 174
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 108 bits (271), Expect = 2e-31
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLL----DEEKDW 84
P ++ G ++ D Y PPK K ++HPN+ +G +CLSLL + W
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 85 KPAITIKQILLGIQDLLNE-PNIKDPAQAEAYTIY 118
P T+K ++ G+ L + N DP EA +
Sbjct: 113 APTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHH 147
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 107 bits (270), Expect = 3e-31
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTV----CLSLLDEEKDW 84
P T +E+ Y L++ YP PP +F + V S V +S+L W
Sbjct: 78 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL---AKW 134
Query: 85 KPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ + +IK +L ++ L+ Q Y
Sbjct: 135 QNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 168
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 106 bits (267), Expect = 8e-31
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEP-PLFHPNV-YPSGTVCLSLLDEEKDWKP 86
P++TP+E+ +++ + YP PPK F + H NV +G +CL++L E+ W P
Sbjct: 57 PSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-WTP 115
Query: 87 AITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ + + LL EP P + I
Sbjct: 116 VWDLLHCVHAVWRLLREPVCDSPLDVDIGNII 147
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 105 bits (265), Expect = 1e-30
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++ W A
Sbjct: 50 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAA 107
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+T++ +LL +Q LL DP A Y
Sbjct: 108 MTLRTVLLSLQALLAAAEPDDPQDAVVANQY 138
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 105 bits (265), Expect = 3e-30
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++ W A
Sbjct: 47 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAA 104
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+T++ +LL +Q LL DP A Y
Sbjct: 105 MTLRTVLLSLQALLAAAEPDDPQDAVVANQY 135
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 106 bits (266), Expect = 3e-30
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P TP+E G + L + +DYP PPK KF ++HPN+ +G +CL +L E W PA
Sbjct: 62 PEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE--WSPA 119
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+TI+ LL IQ LL++P DP AE +Y
Sbjct: 120 LTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 110 bits (275), Expect = 4e-30
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++P++ G + L + F DYP PPK F ++HPN+ +G++ L +L + W PA+
Sbjct: 42 PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPAL 99
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
TI ++LL I LL +PN DP E IY
Sbjct: 100 TISKVLLSICSLLCDPNPDDPLVPEIARIY 129
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 104 bits (262), Expect = 4e-30
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 29 PTNTPW--ESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKP 86
P ++ + +Y+L ++F DDYP PP +F P++ P V G +C ++++ W P
Sbjct: 59 PADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTP 116
Query: 87 AITIKQILLGIQDLL---NEPNIKDPAQAEAYTIY 118
++ + D + + D EA
Sbjct: 117 DQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYL 151
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 103 bits (260), Expect = 5e-30
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P TP+E G + + + +YP PPK +F+ ++HPN+ +G +CL +L W P
Sbjct: 41 PPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA--WSPV 98
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
IT+K L+ +Q LL P DP AE Y
Sbjct: 99 ITLKSALISLQALLQSPEPNDPQDAEVAQHY 129
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 103 bits (258), Expect = 8e-30
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKF--EPPLFHPNVYPSGTVCLSLLDEEKDWKP 86
T +E ++L F YP P+ F E HP+VY +G +CLS+L E+ W P
Sbjct: 63 APGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSP 120
Query: 87 AITIKQILLGIQDLLN 102
A++++ + L I +L+
Sbjct: 121 ALSVQSVCLSIISMLS 136
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 104 bits (261), Expect = 2e-29
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P TP+E G + + + +YP PPK +F+ ++HPN+ +G +CL +L W P
Sbjct: 42 PPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA--WSPV 99
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
IT+K L+ +Q LL P DP AE Y
Sbjct: 100 ITLKSALISLQALLQSPEPNDPQDAEVAQHY 130
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 103 bits (259), Expect = 3e-29
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P TP+E G + L ++ DYP PPK KF ++HPN+ +G +CL +L E W PA
Sbjct: 84 PLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE--WSPA 141
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+TI+ LL IQ +L +P DP AE +
Sbjct: 142 LTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 104 bits (261), Expect = 5e-29
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEEKDWKPA 87
P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L ++ W A
Sbjct: 99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAA 156
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+T++ +LL +Q LL DP A Y
Sbjct: 157 MTLRTVLLSLQALLAAAEPDDPQDAVVANQY 187
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 100 bits (252), Expect = 2e-28
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDW 84
F P TP+E G +K+R+ D YP P F +FHPN+ SGTVCL ++++ W
Sbjct: 57 FYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--W 114
Query: 85 KPAITIKQILL-GIQDLLNEPNIKDPAQAEAYTIY 118
+ I + LL PN DP +A +Y
Sbjct: 115 TALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 97.8 bits (244), Expect = 2e-27
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDW 84
FK P TP+E G++ L + DYP P F + HPNV SG+VCL ++++ W
Sbjct: 44 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQT--W 101
Query: 85 KPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY 118
P ++ I + + LL PN DP +A +
Sbjct: 102 TPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 97.3 bits (243), Expect = 3e-27
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDW 84
F P T +E G +K+ + DDYP P F L HPNV SG+VCL ++++ W
Sbjct: 35 FHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ--TW 92
Query: 85 KPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY 118
P ++ + + + LL PN DP ++A ++
Sbjct: 93 TPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLL 127
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 90.2 bits (224), Expect = 4e-24
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD-WKPA 87
P TP+E G Y ++IF ++P PP P + + +CLS+ D D W PA
Sbjct: 53 PEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPA 110
Query: 88 ITIKQILLGIQDLLNEPNIKDPAQAEAY 115
++ IL G+ + E + +
Sbjct: 111 WSVSTILTGLLSFMVEKGPTLGSIETSD 138
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 87.7 bits (217), Expect = 3e-23
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 26 FKNPTNTPWESG-----------SYKLRMIFKDDYPSTPPKCKFEPPLFHPN-VYPSGTV 73
K ++P S L FKD++P PP + P+ V G +
Sbjct: 67 QKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 126
Query: 74 CLSLLDEEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 114
C+ LL ++ W A +I+ +++ I L + + A
Sbjct: 127 CMELLTKQG-WSSAYSIESVIMQINATLVKGKARVQFGANK 166
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 86.3 bits (213), Expect = 1e-21
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFE-----PPLFHPNVYPSGTVCLSLL----- 78
P +TP+ +G ++ + F DYPS+PP E F+PN+Y G VCLS+L
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178
Query: 79 DEEKDWKPAI-TIKQILLGIQDLL--NEPNIKDPA 110
E+ W P + Q+L+ +Q L+ EP +P
Sbjct: 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPG 213
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 33.4 bits (76), Expect = 0.006
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 47 DDYPSTPPKCKFEPP-----LFHPNVYPSGTVCLSLLDEEKDWK-PAITIKQILLGIQDL 100
D YP PP C +P +V +G + L L +WK P + ++ + +
Sbjct: 79 DTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH---EWKHPQSDLLGLIQVMIVV 135
Query: 101 LNE 103
+
Sbjct: 136 FGD 138
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 32.6 bits (74), Expect = 0.013
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 15/76 (19%)
Query: 41 LRMIFKDDYPSTPPKCKFEPPLF-----------HPNVYPSGTVCLSLLDEEKDWKPAI- 88
+ M YP PP F + +G + L +L W PA
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH---AWDPAAM 141
Query: 89 TIKQILLGIQDLLNEP 104
+ ++ + LL+EP
Sbjct: 142 NLIMVVQELMSLLHEP 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.7
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 33/104 (31%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKD-DYPSTPPKCKFEPPLFHPNVYPSGTVCLSLL 78
+ R + S +LR + K Y + CL +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----------------------CLLVL 250
Query: 79 DE---EKDWKPAITIK-QILL-----GIQDLLNEPNIKDPAQAE 113
K W A + +ILL + D L+ +
Sbjct: 251 LNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam
antibiotic, oxygenase, penicillin biosynthesis,
oxidoreductase, iron; HET: ASV; 1.15A {Emericella
nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A*
1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A*
1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A*
1w06_A* 1w3v_A* 1w3x_A* ...
Length = 331
Score = 25.8 bits (57), Expect = 4.4
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 15 GYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS 70
H R G+ + + ++ P+ + + P NV+P
Sbjct: 79 NKEHQDQVRAGYYLSIPGK---KAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPD 131
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome,
ribosome, eukaryotic initiation factor 60S,
translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Length = 149
Score = 25.1 bits (54), Expect = 5.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 6 QNHHLGLRIGYGHGYPQRCGFKNPTNT 32
+HH L + GY + G +
Sbjct: 40 MHHHRILMEKWHPGYYGKLGMRTFHLK 66
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 22 QRCGFKNPTNTPWESGSYKLRMIFKDDYPS 51
+ F+ P NTP +Y R IF++ +P
Sbjct: 478 ETARFRFPYNTPTSKEAYLYREIFEELFPL 507
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 25.0 bits (54), Expect = 7.5
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 60 PPLFHPNVYPSG--TVC-LSLLDEEKDWKPAITIKQILLG 96
P +F C L+ W+ + I +
Sbjct: 150 PVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFA 189
>3v96_A Metalloproteinase inhibitor 1; metzincin, OB-fold,
metalloproteinase, protease inhibitor, H
inhibitor-hydrolase complex; 1.90A {Homo sapiens} PDB:
1uea_B 1d2b_A 1oo9_B 2j0t_D 3ma2_B
Length = 184
Score = 24.8 bits (53), Expect = 7.7
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 10 LGLRIGYGHGYPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP 69
+ ++ G + C F PW S S R F Y +C P L P
Sbjct: 85 IAGKLQDGLLHITTCSF----VAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQ 140
Query: 70 SGTVCL 75
SGT CL
Sbjct: 141 SGTHCL 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.140 0.465
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,955,396
Number of extensions: 103952
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 66
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)