RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy89
(119 letters)
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 84.3 bits (208), Expect = 9e-23
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
P ++ E+ Y L + +YP +PPK F + P V P+ + +
Sbjct: 41 NGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR 100
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
DWK A T++ +LL ++ + P K Q + +
Sbjct: 101 DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 136
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 84.0 bits (207), Expect = 2e-22
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
P +T +E G +K + F DYP PPK KF ++HPN+ G VC+S+L +
Sbjct: 34 EVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPG 93
Query: 83 D-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
D W P T++ ILL + +L +PN + PA +A +
Sbjct: 94 DDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQ 140
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 82.7 bits (204), Expect = 4e-22
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-GTVCLSLLDEE 81
P T +E+ Y L++ YP PP +F + V S G V +
Sbjct: 42 TGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL 101
Query: 82 KDWKPAITIKQILLGIQDLLNEP-NIKDPAQAEA 114
W+ + +IK +L ++ L+ N+K P E
Sbjct: 102 AKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 135
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 81.4 bits (200), Expect = 2e-21
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 22 QRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEE 81
C + P +TP+ G + ++ F DYP +PPK F P + HPN+YP+G VC+S+L
Sbjct: 36 WDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSP 95
Query: 82 KD-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
D W P ++++ILL + +L+EPNI+ A +A ++
Sbjct: 96 GDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 143
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 79.4 bits (195), Expect = 9e-21
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
+ + P +P++ G + L + F DYP PPK F ++HPN+ +G++CL +L
Sbjct: 31 FHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ W PA+TI ++LL I LL +PN DP E IY
Sbjct: 91 SQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 79.4 bits (195), Expect = 1e-20
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
P +TP+E G+++L + F ++YP+ PP KF +FHPNVY +G +CL +L
Sbjct: 36 NAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQN-- 93
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P + IL IQ L N+PN PA EA T++
Sbjct: 94 RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 129
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 79.4 bits (195), Expect = 1e-20
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
P +T +ES YKL + F DYP PP KF P +HPNV SG +CL +L E
Sbjct: 42 VATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKE-- 99
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+W + ++ ILL +Q LL EPN P A+A ++
Sbjct: 100 NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 135
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 79.3 bits (195), Expect = 1e-20
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P ++SG + YP PPK K E ++HPN+ G VCL++L E DWKP +
Sbjct: 40 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE--DWKPVL 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
TI I+ G+Q L EPN +DP EA +
Sbjct: 98 TINSIIYGLQYLFLEPNPEDPLNKEAAEVLQ 128
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 77.0 bits (189), Expect = 4e-20
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDE-- 80
P +T +E G +K + F DYP PPK KF ++HPNV +G VC+S+L E
Sbjct: 33 EVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPG 92
Query: 81 ---------EKDWKPAITIKQILLGIQDLLNEP 104
E+ W P T++ I++ + +L +P
Sbjct: 93 EDKYGYEKPEERWLPIHTVETIMISVISMLADP 125
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 76.7 bits (188), Expect = 1e-19
Identities = 76/96 (79%), Positives = 85/96 (88%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
C TPWE G +KLRM+FKDDYPS+PPKCKFEPPLFHPNVYPSGTV LS+L+E+K
Sbjct: 40 ECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDK 99
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
DW+PAITIKQILLGIQ+LLNEPNI+DPAQAEAYTIY
Sbjct: 100 DWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 135
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 75.6 bits (185), Expect = 2e-19
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
Y R P + +E G + L + F DYP PPK F ++H N+ G +CL +L
Sbjct: 32 YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK 91
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
+ +W PA+TI ++LL I LL + N DP T Y
Sbjct: 92 D--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 129
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 74.7 bits (183), Expect = 3e-19
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF--HPNVYPSGTVCLSLLDE 80
+ T +E ++L F YP P+ F HP+VY +G +CLS+L E
Sbjct: 38 IVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTE 97
Query: 81 EKDWKPAITIKQILLGIQDLLN 102
DW PA++++ + L I +L+
Sbjct: 98 --DWSPALSVQSVCLSIISMLS 117
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 74.4 bits (182), Expect = 8e-19
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGT-VCLSLLDEE 81
+ N+ W+ ++L + F +Y PP KF FHPNV P C+ LD
Sbjct: 37 EVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP 96
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
+ W T+ ILL +Q +L+ P +++P EA I
Sbjct: 97 EKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILV 134
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 74.0 bits (181), Expect = 1e-18
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLD 79
+ + P +P+E G ++L + DDYP PK +F ++HPN+ G +CL +
Sbjct: 33 RYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDV-- 90
Query: 80 EEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ +W PA+ I+ +LL IQ LL PN DP + +
Sbjct: 91 LKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW 129
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 73.3 bits (179), Expect = 2e-18
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 22 QRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEE 81
P ++P+E G++KL + ++YP PK +F ++HPNV G +CL +L
Sbjct: 34 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-- 91
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W PA+ I+ +LL IQ LL+ PN DP + +
Sbjct: 92 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 128
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 73.3 bits (179), Expect = 2e-18
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
P TP+E G++KL + F ++YP+ PP KF +FHPNVY G++CL +L
Sbjct: 37 AIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NR 94
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
W P + IL IQ LL+EPN PA + A +Y
Sbjct: 95 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQ 130
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 70.6 bits (172), Expect = 2e-17
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
T +E YKL + F YP P KF P +HPNV G + L +L E
Sbjct: 35 GTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKE--K 92
Query: 84 WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W ++ ILL IQ LL EPNI P A ++
Sbjct: 93 WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 127
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 70.6 bits (172), Expect = 3e-17
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P P+ ++ LR+ F +YP PP KF ++HPNV +G +CL ++ ++WKP
Sbjct: 39 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS-SENWKPCT 97
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
Q+L + L+N PNI++P + + +
Sbjct: 98 KTCQVLEALNVLVNRPNIREPLRMDLADLL 127
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 70.2 bits (171), Expect = 3e-17
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 29 PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWKPAI 88
P N P++ G++++ + F +YP PPK F+ ++HPN+ G VCL ++ ++WKPA
Sbjct: 38 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISA-ENWKPAT 96
Query: 89 TIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
Q++ + L+N+P + P +A+ Y
Sbjct: 97 KTDQVIQSLIALVNDPQPEHPLRADLAEEY 126
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 70.6 bits (172), Expect = 3e-17
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN-VYPSGTVCLSLLDEE 81
R P TP+E G + L ++ DYP PPK KF ++HPN +G +CL +L E
Sbjct: 47 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE 106
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W PA+TI+ LL IQ +L +P DP AE +
Sbjct: 107 --WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 141
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 68.7 bits (167), Expect = 1e-16
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-SGTVCLSLLDEE 81
R P +TP+E G Y+L + + YP PPK +F ++HPN+ +G +CL +L +
Sbjct: 40 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD- 98
Query: 82 KDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W A+T++ +LL +Q LL DP A Y
Sbjct: 99 -QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 134
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 68.7 bits (167), Expect = 1e-16
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ F P TP+E G + + + +YP PPK +F+ ++HPN+ + +
Sbjct: 35 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK-N 93
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
W P IT+K L+ +Q LL P DP AE Y
Sbjct: 94 AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 66.7 bits (162), Expect = 9e-16
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 83
F P TP+E G +K+R+ D YP P F +FHPN+ + + +
Sbjct: 33 VKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN-QT 91
Query: 84 WKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIYW 119
W + I + LL PN DP +A +Y
Sbjct: 92 WTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL 128
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 66.1 bits (161), Expect = 1e-15
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 29 PTNTPWESGSYKLRMI--FKDDYPSTPPKCKFEPP-----LFHPNVYPSGTVCLSLLDEE 81
P+ +Y + + D YP PP C +P +V +G + L L E
Sbjct: 56 TIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE- 114
Query: 82 KDWKPAITIKQILLGIQDLLNEPN 105
P + ++ + + +
Sbjct: 115 -WKHPQSDLLGLIQVMIVVFGDEP 137
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 66.7 bits (162), Expect = 1e-15
Identities = 24/93 (25%), Positives = 35/93 (37%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWK 85
FK P TP+E G++ L + DYP P F + HPNV + +
Sbjct: 32 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTP 91
Query: 86 PAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 118
+ + LL PN DP +A +
Sbjct: 92 MYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 124
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 66.0 bits (160), Expect = 1e-15
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 20 YPQRCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLL- 78
R NTP+E G +KL +I + YP PP+ +F P++HPN+ +G +CL +L
Sbjct: 32 DDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 91
Query: 79 -DEEKDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
+ W+P++ I +L IQ L++EPN DP A+ + +
Sbjct: 92 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFK 133
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 64.0 bits (155), Expect = 3e-15
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 24 CGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNVYPSGTVCLSLLDEEK 82
+ NT + + YKL++IF DDYP PP F + P H +VY +G +CLSLL +
Sbjct: 32 VKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGD-- 89
Query: 83 DWKPAITIKQILLGIQDLLN 102
D+ P+++I ++L I +L+
Sbjct: 90 DYNPSLSISGLVLSIISMLS 109
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 65.2 bits (158), Expect = 3e-15
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ + P TP+ G ++++++ D+P++PPK F +FHPNV +G +C+++L
Sbjct: 39 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR-- 96
Query: 83 DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYW 119
DW + I+ +LL I+ LL PN + EA +
Sbjct: 97 DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLL 133
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 62.9 bits (152), Expect = 3e-14
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 23 RCGFKNPTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEK 82
+ P TP+E G Y ++IF ++P PP P + +CLS+ D
Sbjct: 34 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC--NTRLCLSITDFHP 91
Query: 83 D-WKPAITIKQILLGIQDLLNEPNIKDPAQAEAY 115
D W PA ++ IL G+ + E + +
Sbjct: 92 DTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSD 125
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 61.9 bits (150), Expect = 5e-14
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 40 KLRMIFKDDYPSTPPKCKFEPP-----------LFHPNVYPSGTVCLSLLDEEKDWKPAI 88
+ M YP PP + +G + L +L A+
Sbjct: 75 PVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHC--WDPAAM 132
Query: 89 TIKQILLGIQDLLNEPN 105
+ ++ + LL+EP
Sbjct: 133 NLIMVVQELMSLLHEPP 149
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 55.2 bits (132), Expect = 3e-11
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 18 HGYPQRCGFKN---PTNTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVC 74
+ L FKD++P PP + P+ G
Sbjct: 44 QKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 103
Query: 75 LSLLDEEKDWKPAITIKQILLGIQDLLNEPN--IKDPAQAEAYTIY 118
L ++ W A +I+ +++ I L + ++ A Y +
Sbjct: 104 CMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA 149
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 25.5 bits (55), Expect = 2.0
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 14 IGYGHGYPQRC---------GFKNPTNTPWESGSYKLRMIFKDDYPSTPPK---CKFEPP 61
I G Y R G K + + D P P +P
Sbjct: 250 IATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR 309
Query: 62 LFHPNVYPSGTVCLSLLDEEKDWKPAITIKQILLGIQDLLNE 103
F P + + E+ WKP IT+++ + +++
Sbjct: 310 YFRPAEVETLLGDPTKAHEKLGWKPEITLRE---MVSEMVAN 348
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 120
Score = 25.0 bits (54), Expect = 2.1
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 35 ESGSYKLRMIFKDDYPSTPP 54
S +++ + D++P P
Sbjct: 101 GSTVFRITTMPADEFPEITP 120
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 23.4 bits (49), Expect = 8.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 26 FKNPTNTPWESGSYKLRMIFKDDYPS 51
F+ P NTP +Y R IF++ +P
Sbjct: 290 FRFPYNTPTSKEAYLYREIFEELFPL 315
>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E
{Human herpesvirus 1 [TaxId: 10298]}
Length = 177
Score = 23.2 bits (50), Expect = 9.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 49 YPSTPPKCK----FEPPLFHPNVYPSGTVCLS 76
P C +E L+HP + P CLS
Sbjct: 47 RFDVPTSCAEMRIYESCLYHPQL-PE---CLS 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.140 0.465
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 502,103
Number of extensions: 22789
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 36
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)