BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy890
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 67 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
+RF + AE LP DS+ T + + + + KA+ E RVLK GRFL ++
Sbjct: 71 VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 67 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
++FL+AN LP E S+ + F + ++ ++AL +VLKPGG +E H
Sbjct: 89 VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 94
P + + A L VG +RA P ++ A E LP +S+ + +
Sbjct: 57 PQKVGVEPSEAXLAVGRRRA----------PEATWVRAWGEALPFPGESFDVVLLFTTLE 106
Query: 95 NVTRIDKALSEAYRVLKPGGRFLC 118
V +++ L EA RVL+PGG +
Sbjct: 107 FVEDVERVLLEARRVLRPGGALVV 130
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 114
L+ AE LP++ +S+ I V ++AL EAYR+LK GG
Sbjct: 89 LKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG 133
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 120
NPR F AEE+ +E+ S+S Y G+R T I K L S+ + V K R +C
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307
Query: 121 FSHVNN 126
F+ +N
Sbjct: 308 FNGASN 313
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 120
NPR F AEE+ +E+ S+S Y G+R T I K L S+ + V K R +C
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSQYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307
Query: 121 FSHVNN 126
F+ +N
Sbjct: 308 FNGASN 313
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
+ ++ +++ +AE+ P + + T + +SEAYRVLK GG+ L ++ S
Sbjct: 84 HQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121
R+ F A+A +LP E S+ A + + +AL E RVL+PGG +F
Sbjct: 112 RVTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 120
NPR F AEE+ +E+ S+S Y G+R T I K L S+ + V K R +C
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307
Query: 121 FSHVNN 126
F+ +N
Sbjct: 308 FNGASN 313
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 41 DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 100
D + A L+V Q K+ + +++ ++A+A +P+ +S + V
Sbjct: 68 DADAAXLEVFRQ------KIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWP 121
Query: 101 KALSEAYRVLKPGGRFL 117
K L+EA RVLKPGG L
Sbjct: 122 KVLAEAIRVLKPGGALL 138
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 32.3 bits (72), Expect = 0.072, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 120
NPR F AEE+ E+ S+S Y G+R T I K L S+ + V K R +C
Sbjct: 248 NPRSIFEIPGAEEVAXETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307
Query: 121 FSHVNN 126
F+ +N
Sbjct: 308 FNGASN 313
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCL 119
V +D+ LSE RVL PGGRF+ +
Sbjct: 134 GVHTVDQVLSEVSRVLVPGGRFISM 158
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 70 LEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGG 114
+EA AE+LP S ++ A +A G + V DKA SE RVL P G
Sbjct: 101 VEAKAEDLPFPSGAFEA-VLALGDVLSYVENKDKAFSEIRRVLVPDG 146
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 30 SEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTI 89
+EH A V D++ ML +++ +P + + + E++ IE D+Y+
Sbjct: 63 AEHGAKKVLGIDLSERMLTEAKRK--------TTSPVVCYEQKAIEDIAIEPDAYNVVLS 114
Query: 90 AFGIRNVTRIDKALSEAYRVLKPGGRFL 117
+ + + D + Y LK G F+
Sbjct: 115 SLALHYIASFDDICKKVYINLKSSGSFI 142
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 64 NPRLRFLEANAEELPIESDSYSAYTIAFG-IRNVTRIDKALSEAYRVLKPGGR 115
N R++ ++ + +PIE D+Y+ ++ G + + A E YR+LK GG+
Sbjct: 92 NDRIQIVQGDVHNIPIE-DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGK 143
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 64 NPRLRFLEANAEELPIESDSYS---AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
N +L + + +LP + +S S +Y F R + +A+ E RVLKPGG C+
Sbjct: 70 NFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRK-NDVKEAIDEIKRVLKPGG-LACIN 127
Query: 121 F 121
F
Sbjct: 128 F 128
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYS-AYTIAF--GI 93
VT DIN + + E AR + F NA L S+ A AF +
Sbjct: 55 VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + + E +RVLKPG +EF
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144
>pdb|2GH1|A Chain A, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20.
pdb|2GH1|B Chain B, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20
Length = 301
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 47 LDVGEQ---RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 103
+D GE AR+LF++ +P FLE +A E+ + +D Y + + T + L
Sbjct: 70 IDSGETLLAEARELFRL-LPYDS-EFLEGDATEIEL-NDKYDIAICHAFLLHXTTPETXL 126
Query: 104 SEAYRVLKPGGRFLCLEFSHVNN 126
+ +K GG+ +C E ++N
Sbjct: 127 QKXIHSVKKGGKIICFEPHWISN 149
>pdb|3GU3|A Chain A, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
pdb|3GU3|B Chain B, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
Length = 284
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 47 LDVGEQ---RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 103
+D GE AR+LF++ +P FLE +A E+ + +D Y + + T + L
Sbjct: 53 IDSGETLLAEARELFRL-LPYDS-EFLEGDATEIEL-NDKYDIAICHAFLLHXTTPETXL 109
Query: 104 SEAYRVLKPGGRFLCLEFSHVNN 126
+ +K GG+ +C E ++N
Sbjct: 110 QKXIHSVKKGGKIICFEPHWISN 132
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 68 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
R + ++P+E +S + T I L EA RVLKPGG E S
Sbjct: 100 RVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVS 153
>pdb|3D2U|A Chain A, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
pdb|3D2U|E Chain E, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
Length = 281
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAP 35
Y FPG+I F++Y DK+P ++ C P
Sbjct: 212 YGFFPGEIQITFIHYGDKVPEDS-EPQCNP 240
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 31 EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
EH A +V D++ L RAR P+ + + A+ ++L + DS+ +
Sbjct: 63 EHGASYVLGLDLSEKXL----ARAR----AAGPDTGITYERADLDKLHLPQDSFDLAYSS 114
Query: 91 FGIRNVTRIDKALSEAYRVLKPGGRFL 117
+ V + + ++ L PGG F+
Sbjct: 115 LALHYVEDVARLFRTVHQALSPGGHFV 141
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 31 EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
EH + T+ I ML E D+ V P LR L+A E+L I ++
Sbjct: 250 EHASQ--TLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDR 307
Query: 91 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
G L+ + ++PG R L L +
Sbjct: 308 LGNMASASTPVTLAMFWPDIQPGQRVLVLTYG 339
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT 97
T+ I ML E D+ V P LR L+A E+L I ++ G
Sbjct: 255 TLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDRLGNMASA 314
Query: 98 RIDKALSEAYRVLKPGGRFLCLEFS 122
L+ + ++PG R L L +
Sbjct: 315 STPVTLAMFWPDIQPGQRVLVLTYG 339
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 31 EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
EH + T+ I ML E D+ V P LR L+A E+L I ++
Sbjct: 250 EHASQ--TLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDR 307
Query: 91 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
G L+ + ++PG R L L +
Sbjct: 308 LGNMASASTPVTLAMFWPDIQPGQRVLVLTYG 339
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 93 IRNVTRIDKALSE-AYRVLKPGGRFL---CLEFSHVNNSMLQW 131
I ++++ + L E A R++KPGGR L C F N ++W
Sbjct: 361 INEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRW 403
>pdb|1NFA|A Chain A, Human Transcription Factor Nfatc Dna Binding Domain, Nmr,
10 Structures
Length = 178
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 41 DINRAMLDVGEQ--RARDLFKVPVPNPRLRFLEANAEELPIESDSYS 85
++ + D+G + R R +F+V VP P R L PIE S
Sbjct: 132 ELRKGETDIGRKNTRVRLVFRVHVPQPSGRTLSLQVASNPIECSQRS 178
>pdb|1A66|A Chain A, Solution Nmr Structure Of The Core Nfatc1DNA COMPLEX, 18
Structures
Length = 178
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 41 DINRAMLDVGEQ--RARDLFKVPVPNPRLRFLEANAEELPIESDSYS 85
++ + D+G + R R +F+V VP P R L PIE S
Sbjct: 132 ELRKGETDIGRKNTRVRLVFRVHVPQPSGRTLSLQVASNPIECSQRS 178
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 52 QRARDLFKVPVPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 109
Q+AR++ + R+ L E ELP + D+ + + +G+ + + + L +
Sbjct: 119 QQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKW 178
Query: 110 LKPGGRFL----CLEFSHVNNSMLQW 131
LK GG L L +++ ML+W
Sbjct: 179 LKEGGLLLPASAELFIVPISDQMLEW 204
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 106
++ N EE PI D+ Y + F RI + L EA
Sbjct: 436 MQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 106
++ N EE PI D+ Y + F RI + L EA
Sbjct: 436 MQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,518
Number of Sequences: 62578
Number of extensions: 138688
Number of successful extensions: 522
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 35
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)