Query psy890
Match_columns 131
No_of_seqs 121 out of 1298
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 22:20:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 6.8E-27 1.5E-31 155.3 11.4 113 1-129 53-165 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 2.9E-26 6.3E-31 153.2 10.1 113 2-129 50-162 (233)
3 KOG1540|consensus 99.9 2E-24 4.4E-29 142.5 11.9 122 1-129 102-223 (296)
4 PLN02233 ubiquinone biosynthes 99.9 2.1E-22 4.5E-27 137.0 12.8 111 2-126 76-188 (261)
5 PF08241 Methyltransf_11: Meth 99.9 9.5E-22 2.1E-26 114.3 10.1 95 4-118 1-95 (95)
6 PF13847 Methyltransf_31: Meth 99.9 5E-21 1.1E-25 120.7 11.7 106 1-122 5-112 (152)
7 TIGR02752 MenG_heptapren 2-hep 99.9 1.6E-20 3.5E-25 125.7 12.1 111 1-126 47-157 (231)
8 PF12847 Methyltransf_18: Meth 99.9 1.9E-20 4.2E-25 112.2 10.8 104 2-121 4-112 (112)
9 PLN02244 tocopherol O-methyltr 99.8 4.9E-20 1.1E-24 129.5 12.7 105 2-122 121-225 (340)
10 PLN02396 hexaprenyldihydroxybe 99.8 5.5E-20 1.2E-24 127.9 10.9 105 2-123 134-238 (322)
11 KOG4300|consensus 99.8 6.6E-20 1.4E-24 118.0 8.9 111 2-129 79-191 (252)
12 PRK11036 putative S-adenosyl-L 99.8 1.1E-19 2.4E-24 123.4 10.4 104 2-122 47-151 (255)
13 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.7E-20 5.8E-25 122.6 6.9 105 1-124 61-165 (243)
14 PTZ00098 phosphoethanolamine N 99.8 5.5E-19 1.2E-23 120.4 11.9 105 1-124 54-160 (263)
15 PRK11207 tellurite resistance 99.8 8.7E-19 1.9E-23 114.8 11.6 100 2-120 33-134 (197)
16 PF08242 Methyltransf_12: Meth 99.8 1.7E-20 3.7E-25 110.3 3.1 97 4-116 1-99 (99)
17 PRK11873 arsM arsenite S-adeno 99.8 1.4E-18 3E-23 119.0 12.7 106 2-122 80-185 (272)
18 PRK10258 biotin biosynthesis p 99.8 5.2E-19 1.1E-23 119.8 10.3 100 2-124 45-144 (251)
19 smart00828 PKS_MT Methyltransf 99.8 1.9E-18 4.1E-23 115.2 11.2 105 2-122 2-106 (224)
20 PRK14103 trans-aconitate 2-met 99.8 1.3E-18 2.7E-23 118.2 10.4 95 2-120 32-126 (255)
21 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.7E-18 3.7E-23 117.1 10.8 108 2-124 59-168 (247)
22 TIGR00740 methyltransferase, p 99.8 4E-18 8.6E-23 114.7 11.4 108 2-124 56-165 (239)
23 PLN02490 MPBQ/MSBQ methyltrans 99.8 3.9E-18 8.5E-23 119.2 11.6 103 1-122 115-217 (340)
24 PF13649 Methyltransf_25: Meth 99.8 8.2E-19 1.8E-23 103.5 7.1 98 3-114 1-101 (101)
25 TIGR00477 tehB tellurite resis 99.8 4.3E-18 9.2E-23 111.4 11.1 100 2-121 33-134 (195)
26 PLN02336 phosphoethanolamine N 99.8 7.5E-18 1.6E-22 123.2 13.4 104 2-123 269-372 (475)
27 TIGR02072 BioC biotin biosynth 99.8 3.9E-18 8.5E-23 114.2 11.0 103 2-124 37-139 (240)
28 PRK00107 gidB 16S rRNA methylt 99.8 8.4E-18 1.8E-22 109.1 11.8 101 1-122 47-147 (187)
29 PRK00216 ubiE ubiquinone/menaq 99.8 1.1E-17 2.3E-22 112.2 12.2 111 1-125 53-163 (239)
30 PRK01683 trans-aconitate 2-met 99.8 6.7E-18 1.5E-22 114.7 11.1 96 2-119 34-129 (258)
31 PRK05785 hypothetical protein; 99.8 4.2E-18 9.2E-23 113.7 9.8 100 2-128 54-153 (226)
32 PRK15068 tRNA mo(5)U34 methylt 99.8 1.4E-17 3.1E-22 116.3 11.9 102 2-120 125-226 (322)
33 KOG1270|consensus 99.8 2.7E-18 5.9E-23 114.1 6.8 105 1-124 91-199 (282)
34 PRK08317 hypothetical protein; 99.8 3.8E-17 8.3E-22 109.4 12.4 106 1-122 21-126 (241)
35 TIGR00138 gidB 16S rRNA methyl 99.7 2.8E-17 6.1E-22 106.3 10.9 99 1-120 44-142 (181)
36 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.8E-17 1E-21 108.0 12.1 108 1-125 41-148 (223)
37 COG2230 Cfa Cyclopropane fatty 99.7 3.8E-17 8.2E-22 110.9 11.4 108 1-127 74-183 (283)
38 PRK12335 tellurite resistance 99.7 3.7E-17 7.9E-22 112.7 11.5 99 2-120 123-223 (287)
39 PF13489 Methyltransf_23: Meth 99.7 1.2E-17 2.6E-22 105.7 8.3 95 1-123 24-118 (161)
40 PRK00121 trmB tRNA (guanine-N( 99.7 3.4E-17 7.3E-22 107.7 10.0 103 2-120 43-156 (202)
41 PRK06922 hypothetical protein; 99.7 5E-17 1.1E-21 120.5 11.7 106 1-123 420-540 (677)
42 TIGR00452 methyltransferase, p 99.7 6E-17 1.3E-21 112.4 11.4 103 2-121 124-226 (314)
43 PF02353 CMAS: Mycolic acid cy 99.7 1.4E-16 2.9E-21 108.9 11.3 103 1-122 64-168 (273)
44 PF05175 MTS: Methyltransferas 99.7 1.9E-16 4.1E-21 101.6 10.8 102 2-120 34-140 (170)
45 COG4106 Tam Trans-aconitate me 99.7 3.8E-17 8.3E-22 106.0 7.0 95 2-118 33-127 (257)
46 PF03848 TehB: Tellurite resis 99.7 3.9E-16 8.5E-21 101.1 11.5 101 2-122 33-135 (192)
47 PF05401 NodS: Nodulation prot 99.7 2.7E-16 5.8E-21 101.2 10.3 100 2-122 46-148 (201)
48 PRK13944 protein-L-isoaspartat 99.7 3.9E-16 8.4E-21 102.9 11.3 98 2-119 75-172 (205)
49 smart00138 MeTrc Methyltransfe 99.7 1.2E-16 2.6E-21 108.9 9.0 112 2-119 102-241 (264)
50 PLN02336 phosphoethanolamine N 99.7 3E-16 6.5E-21 114.9 11.6 104 2-125 40-147 (475)
51 TIGR02716 C20_methyl_CrtF C-20 99.7 4.7E-16 1E-20 108.1 12.0 104 2-123 152-257 (306)
52 TIGR03587 Pse_Me-ase pseudamin 99.7 4.5E-16 9.7E-21 102.5 11.0 99 2-124 46-146 (204)
53 TIGR00091 tRNA (guanine-N(7)-) 99.7 3.4E-16 7.3E-21 102.4 10.0 103 2-120 19-132 (194)
54 TIGR02469 CbiT precorrin-6Y C5 99.7 1E-15 2.2E-20 93.0 11.1 100 1-119 21-121 (124)
55 PLN03075 nicotianamine synthas 99.7 8.3E-16 1.8E-20 105.3 11.3 104 2-120 126-233 (296)
56 PRK11088 rrmA 23S rRNA methylt 99.7 3.3E-16 7.2E-21 107.3 9.1 97 2-123 88-184 (272)
57 PRK06202 hypothetical protein; 99.7 6.7E-16 1.5E-20 103.5 10.4 106 2-124 63-170 (232)
58 PRK13942 protein-L-isoaspartat 99.7 1.3E-15 2.8E-20 100.9 11.2 99 1-120 78-176 (212)
59 TIGR01983 UbiG ubiquinone bios 99.7 3.1E-15 6.6E-20 99.7 11.2 104 1-122 47-151 (224)
60 TIGR00080 pimt protein-L-isoas 99.6 5.4E-15 1.2E-19 98.1 11.5 97 2-119 80-176 (215)
61 PRK14121 tRNA (guanine-N(7)-)- 99.6 3.9E-15 8.5E-20 105.4 11.3 103 2-120 125-235 (390)
62 TIGR00537 hemK_rel_arch HemK-r 99.6 8.2E-15 1.8E-19 94.7 11.6 102 2-124 22-144 (179)
63 PLN02232 ubiquinone biosynthes 99.6 1.6E-15 3.5E-20 96.4 8.1 87 38-126 1-87 (160)
64 PRK09489 rsmC 16S ribosomal RN 99.6 5E-15 1.1E-19 104.2 11.0 100 2-120 199-303 (342)
65 PRK05134 bifunctional 3-demeth 99.6 6.9E-15 1.5E-19 98.6 11.0 102 2-122 51-153 (233)
66 PRK15001 SAM-dependent 23S rib 99.6 8.4E-15 1.8E-19 103.9 11.9 105 2-120 231-340 (378)
67 PRK11705 cyclopropane fatty ac 99.6 5.4E-15 1.2E-19 105.5 11.0 101 1-124 169-271 (383)
68 PF13659 Methyltransf_26: Meth 99.6 4.4E-15 9.6E-20 89.5 8.9 103 2-120 3-115 (117)
69 TIGR03840 TMPT_Se_Te thiopurin 99.6 7.3E-15 1.6E-19 97.2 10.5 109 2-123 37-155 (213)
70 PRK00377 cbiT cobalt-precorrin 99.6 1.1E-14 2.3E-19 95.6 11.2 100 2-118 43-143 (198)
71 PRK08287 cobalt-precorrin-6Y C 99.6 1.4E-14 2.9E-19 94.3 11.3 98 2-120 34-131 (187)
72 KOG2361|consensus 99.6 2.3E-15 5E-20 99.2 7.1 115 2-131 74-194 (264)
73 COG4123 Predicted O-methyltran 99.6 7.3E-15 1.6E-19 98.2 9.5 104 2-120 47-170 (248)
74 TIGR02021 BchM-ChlM magnesium 99.6 1.5E-14 3.3E-19 96.2 10.6 97 2-118 58-156 (219)
75 PF08003 Methyltransf_9: Prote 99.6 1.7E-14 3.8E-19 98.4 10.3 100 2-118 118-217 (315)
76 TIGR00406 prmA ribosomal prote 99.6 1.6E-14 3.4E-19 99.7 9.6 101 1-122 161-261 (288)
77 cd02440 AdoMet_MTases S-adenos 99.6 6.9E-14 1.5E-18 81.5 10.8 101 2-119 1-103 (107)
78 PRK04266 fibrillarin; Provisio 99.6 4E-14 8.8E-19 94.4 10.8 97 1-118 74-174 (226)
79 TIGR03438 probable methyltrans 99.6 4.3E-14 9.4E-19 98.1 11.0 104 2-119 66-176 (301)
80 TIGR03533 L3_gln_methyl protei 99.6 8.3E-14 1.8E-18 96.0 11.7 104 2-122 124-252 (284)
81 PRK11188 rrmJ 23S rRNA methylt 99.6 3.9E-14 8.4E-19 93.6 9.7 96 2-123 54-168 (209)
82 TIGR03534 RF_mod_PrmC protein- 99.6 8.2E-14 1.8E-18 94.2 11.4 101 2-119 90-216 (251)
83 PRK00312 pcm protein-L-isoaspa 99.6 9.6E-14 2.1E-18 91.9 11.2 97 1-121 80-176 (212)
84 PRK11805 N5-glutamine S-adenos 99.6 5.8E-14 1.3E-18 97.6 10.6 105 2-123 136-265 (307)
85 PF01135 PCMT: Protein-L-isoas 99.6 4.1E-14 8.9E-19 93.3 8.8 99 1-120 74-172 (209)
86 PRK13255 thiopurine S-methyltr 99.5 1.1E-13 2.4E-18 91.9 10.8 106 2-120 40-155 (218)
87 COG2518 Pcm Protein-L-isoaspar 99.5 1.4E-13 3.1E-18 89.7 10.8 97 1-121 74-170 (209)
88 TIGR00536 hemK_fam HemK family 99.5 1.3E-13 2.8E-18 95.1 11.2 105 2-123 117-246 (284)
89 PRK14967 putative methyltransf 99.5 1.7E-13 3.7E-18 91.4 11.4 102 2-122 39-161 (223)
90 PRK07402 precorrin-6B methylas 99.5 2.6E-13 5.6E-18 88.9 11.5 101 2-122 43-144 (196)
91 PRK07580 Mg-protoporphyrin IX 99.5 1.5E-13 3.2E-18 91.9 10.4 96 2-117 66-163 (230)
92 KOG1271|consensus 99.5 6.4E-14 1.4E-18 89.0 8.0 108 2-124 70-185 (227)
93 PRK14968 putative methyltransf 99.5 1.9E-13 4.2E-18 88.6 10.5 104 2-122 26-150 (188)
94 KOG3010|consensus 99.5 2.5E-14 5.4E-19 94.3 6.3 103 2-122 36-139 (261)
95 PF00891 Methyltransf_2: O-met 99.5 9.2E-14 2E-18 93.7 9.2 99 2-126 103-205 (241)
96 PRK00517 prmA ribosomal protei 99.5 1.7E-13 3.7E-18 92.9 10.0 95 2-123 122-216 (250)
97 COG2813 RsmC 16S RNA G1207 met 99.5 3.7E-13 8E-18 91.9 10.9 102 2-121 161-267 (300)
98 TIGR01177 conserved hypothetic 99.5 5E-13 1.1E-17 93.9 11.7 104 2-123 185-297 (329)
99 COG2519 GCD14 tRNA(1-methylade 99.5 5E-13 1.1E-17 89.1 11.0 100 1-120 96-195 (256)
100 PRK13943 protein-L-isoaspartat 99.5 2.6E-13 5.6E-18 94.7 10.1 98 1-119 82-179 (322)
101 PTZ00146 fibrillarin; Provisio 99.5 1.1E-12 2.3E-17 89.9 11.8 100 1-119 134-236 (293)
102 PF05891 Methyltransf_PK: AdoM 99.5 3.8E-13 8.3E-18 88.0 8.8 102 2-120 58-161 (218)
103 TIGR02081 metW methionine bios 99.5 3.4E-13 7.3E-18 88.2 8.3 87 2-112 16-104 (194)
104 COG2242 CobL Precorrin-6B meth 99.5 1.8E-12 3.9E-17 83.0 11.1 99 2-120 37-135 (187)
105 PRK14901 16S rRNA methyltransf 99.5 1.3E-12 2.9E-17 94.8 11.9 108 1-123 254-387 (434)
106 PLN02781 Probable caffeoyl-CoA 99.5 1.1E-12 2.3E-17 88.1 10.6 100 2-118 71-176 (234)
107 PRK09328 N5-glutamine S-adenos 99.5 1.9E-12 4.2E-17 88.7 11.8 100 2-118 111-236 (275)
108 PRK04457 spermidine synthase; 99.5 8.7E-13 1.9E-17 89.9 9.9 106 2-122 69-179 (262)
109 PLN02585 magnesium protoporphy 99.5 1.3E-12 2.8E-17 91.0 10.8 99 2-117 147-247 (315)
110 PRK00811 spermidine synthase; 99.5 1E-12 2.2E-17 90.5 10.1 103 2-118 79-189 (283)
111 TIGR00446 nop2p NOL1/NOP2/sun 99.4 1.7E-12 3.7E-17 88.7 10.7 107 2-123 74-202 (264)
112 PRK14966 unknown domain/N5-glu 99.4 2.2E-12 4.7E-17 92.2 11.5 104 2-123 254-383 (423)
113 COG2264 PrmA Ribosomal protein 99.4 8.7E-13 1.9E-17 90.5 9.2 100 1-120 164-263 (300)
114 PRK01544 bifunctional N5-gluta 99.4 1.5E-12 3.3E-17 96.0 11.1 104 2-122 141-270 (506)
115 PRK14903 16S rRNA methyltransf 99.4 2E-12 4.4E-17 93.7 11.4 108 2-124 240-370 (431)
116 PF06325 PrmA: Ribosomal prote 99.4 9E-13 2E-17 90.8 8.8 96 2-120 164-259 (295)
117 PRK14904 16S rRNA methyltransf 99.4 3.1E-12 6.8E-17 93.1 12.0 107 2-124 253-381 (445)
118 TIGR00563 rsmB ribosomal RNA s 99.4 3E-12 6.4E-17 92.8 11.8 107 2-123 241-371 (426)
119 PF02390 Methyltransf_4: Putat 99.4 3E-12 6.5E-17 83.8 10.2 103 2-120 20-133 (195)
120 PRK10901 16S rRNA methyltransf 99.4 5.2E-12 1.1E-16 91.6 11.7 106 1-123 246-375 (427)
121 KOG2940|consensus 99.4 9.1E-14 2E-18 91.4 2.4 108 2-128 75-182 (325)
122 TIGR03704 PrmC_rel_meth putati 99.4 7.7E-12 1.7E-16 84.9 11.2 99 2-119 89-215 (251)
123 PF08704 GCD14: tRNA methyltra 99.4 5.6E-12 1.2E-16 84.9 10.4 100 1-119 42-145 (247)
124 PRK14902 16S rRNA methyltransf 99.4 1E-11 2.2E-16 90.5 11.8 105 2-122 253-381 (444)
125 PF07021 MetW: Methionine bios 99.4 1.9E-12 4.2E-17 83.3 7.1 87 1-111 15-103 (193)
126 PF01596 Methyltransf_3: O-met 99.4 5.7E-12 1.2E-16 82.9 9.3 100 2-118 48-153 (205)
127 TIGR00438 rrmJ cell division p 99.4 3.4E-12 7.3E-17 83.1 8.1 94 2-121 35-147 (188)
128 PHA03411 putative methyltransf 99.4 1.4E-11 3E-16 83.7 10.4 97 2-120 67-183 (279)
129 PRK13256 thiopurine S-methyltr 99.4 1.7E-11 3.7E-16 81.6 10.6 108 2-122 46-165 (226)
130 COG2890 HemK Methylase of poly 99.4 1.9E-11 4.1E-16 84.1 11.1 104 2-124 113-241 (280)
131 COG4122 Predicted O-methyltran 99.3 1.5E-11 3.2E-16 81.3 9.8 100 2-118 62-164 (219)
132 smart00650 rADc Ribosomal RNA 99.3 9.7E-12 2.1E-16 79.7 8.6 94 2-118 16-111 (169)
133 KOG2899|consensus 99.3 9.6E-12 2.1E-16 82.4 8.6 106 2-118 61-207 (288)
134 PLN02476 O-methyltransferase 99.3 1.9E-11 4E-16 83.6 10.3 100 2-118 121-226 (278)
135 PF03291 Pox_MCEL: mRNA cappin 99.3 1.4E-11 3.1E-16 86.4 10.0 110 1-122 64-188 (331)
136 COG0220 Predicted S-adenosylme 99.3 2.8E-11 6E-16 80.7 10.0 103 2-120 51-164 (227)
137 TIGR00417 speE spermidine synt 99.3 2.5E-11 5.4E-16 83.2 10.0 104 2-119 75-185 (270)
138 PRK15128 23S rRNA m(5)C1962 me 99.3 1.4E-11 3.1E-16 88.3 9.0 109 2-125 223-344 (396)
139 PF05219 DREV: DREV methyltran 99.3 2E-11 4.2E-16 81.9 8.6 90 2-118 97-186 (265)
140 PF05724 TPMT: Thiopurine S-me 99.3 2E-11 4.4E-16 81.1 8.6 108 2-122 40-157 (218)
141 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.5E-11 5.4E-16 92.7 9.7 107 2-123 541-659 (702)
142 PRK01581 speE spermidine synth 99.3 3.1E-11 6.8E-16 84.9 9.0 104 2-119 153-267 (374)
143 PLN02366 spermidine synthase 99.3 6.2E-11 1.3E-15 82.4 10.4 103 2-118 94-204 (308)
144 PRK10611 chemotaxis methyltran 99.3 2.1E-11 4.5E-16 83.9 7.2 115 2-119 118-261 (287)
145 PHA03412 putative methyltransf 99.2 6.5E-11 1.4E-15 78.9 8.8 95 2-115 52-158 (241)
146 PLN02589 caffeoyl-CoA O-methyl 99.2 5.8E-11 1.3E-15 80.2 8.6 100 2-118 82-188 (247)
147 PF06080 DUF938: Protein of un 99.2 6E-11 1.3E-15 77.4 8.2 102 2-119 28-140 (204)
148 KOG1541|consensus 99.2 8.6E-11 1.9E-15 77.0 8.7 94 2-118 53-158 (270)
149 PRK03612 spermidine synthase; 99.2 6E-11 1.3E-15 87.9 9.0 104 2-119 300-414 (521)
150 PF01739 CheR: CheR methyltran 99.2 5.5E-11 1.2E-15 77.8 7.8 116 2-119 34-174 (196)
151 COG4976 Predicted methyltransf 99.2 3.3E-12 7.2E-17 84.0 2.1 101 2-125 128-230 (287)
152 PF10294 Methyltransf_16: Puta 99.2 1.1E-10 2.3E-15 75.2 9.1 106 2-123 48-159 (173)
153 KOG1499|consensus 99.2 6.4E-11 1.4E-15 82.2 8.0 99 2-117 63-164 (346)
154 COG3963 Phospholipid N-methylt 99.2 2.2E-10 4.8E-15 72.0 9.4 103 1-123 50-159 (194)
155 PF05185 PRMT5: PRMT5 arginine 99.2 1.2E-10 2.6E-15 84.6 8.9 104 2-117 189-294 (448)
156 PLN02672 methionine S-methyltr 99.2 3.9E-10 8.4E-15 88.7 11.4 112 2-125 121-282 (1082)
157 PRK03522 rumB 23S rRNA methylu 99.2 3.6E-10 7.7E-15 79.1 9.5 96 2-118 176-272 (315)
158 PRK10909 rsmD 16S rRNA m(2)G96 99.2 7.4E-10 1.6E-14 72.7 10.1 103 2-123 56-161 (199)
159 PRK13168 rumA 23S rRNA m(5)U19 99.2 4.6E-10 9.9E-15 81.9 10.1 96 2-119 300-399 (443)
160 PRK01544 bifunctional N5-gluta 99.1 5.8E-10 1.2E-14 82.5 9.6 102 2-119 350-461 (506)
161 KOG2904|consensus 99.1 1.2E-09 2.5E-14 73.8 10.1 103 2-119 151-284 (328)
162 PF05148 Methyltransf_8: Hypot 99.1 3.7E-10 8.1E-15 73.6 7.2 87 2-123 75-161 (219)
163 KOG1975|consensus 99.1 6.3E-10 1.4E-14 76.7 7.7 106 2-119 120-236 (389)
164 COG1352 CheR Methylase of chem 99.1 8.8E-10 1.9E-14 75.1 8.5 116 2-119 99-240 (268)
165 KOG1500|consensus 99.0 1.4E-09 3E-14 75.6 8.0 97 2-117 180-279 (517)
166 KOG1661|consensus 99.0 1.7E-09 3.7E-14 70.4 7.9 103 2-119 85-192 (237)
167 PF01170 UPF0020: Putative RNA 99.0 7.4E-09 1.6E-13 67.0 10.1 111 2-118 31-149 (179)
168 KOG3191|consensus 99.0 9.4E-09 2E-13 65.6 9.5 103 3-122 47-170 (209)
169 COG0421 SpeE Spermidine syntha 99.0 5.7E-09 1.2E-13 71.8 9.2 106 2-119 79-189 (282)
170 PRK14896 ksgA 16S ribosomal RN 99.0 3.2E-09 6.9E-14 72.4 7.7 71 2-94 32-102 (258)
171 TIGR00479 rumA 23S rRNA (uraci 99.0 6.5E-09 1.4E-13 75.7 9.6 96 2-118 295-394 (431)
172 COG2263 Predicted RNA methylas 99.0 4.2E-09 9.1E-14 67.7 7.5 71 2-93 48-118 (198)
173 PLN02823 spermine synthase 99.0 8E-09 1.7E-13 72.7 9.5 103 2-118 106-218 (336)
174 TIGR00095 RNA methyltransferas 99.0 1.7E-08 3.7E-13 65.8 10.5 104 2-123 52-161 (189)
175 PRK11727 23S rRNA mA1618 methy 99.0 9.4E-09 2E-13 71.9 9.7 80 2-96 117-202 (321)
176 PRK00050 16S rRNA m(4)C1402 me 99.0 2.5E-09 5.4E-14 73.9 6.7 76 2-94 22-101 (296)
177 PRK04338 N(2),N(2)-dimethylgua 99.0 9.2E-09 2E-13 73.7 9.7 98 2-119 60-157 (382)
178 TIGR02085 meth_trns_rumB 23S r 98.9 9.2E-09 2E-13 73.6 9.4 97 2-119 236-333 (374)
179 KOG1663|consensus 98.9 2.1E-08 4.7E-13 66.2 10.2 100 2-118 76-181 (237)
180 COG1092 Predicted SAM-dependen 98.9 8.6E-09 1.9E-13 73.7 8.9 109 2-125 220-341 (393)
181 PRK00274 ksgA 16S ribosomal RN 98.9 3.7E-09 8.1E-14 72.6 6.7 70 2-92 45-114 (272)
182 COG1041 Predicted DNA modifica 98.9 1.3E-08 2.9E-13 71.1 9.4 102 2-121 200-311 (347)
183 PF02475 Met_10: Met-10+ like- 98.9 1.5E-08 3.2E-13 66.5 9.0 96 2-117 104-199 (200)
184 PTZ00338 dimethyladenosine tra 98.9 5.1E-09 1.1E-13 72.6 7.3 74 2-94 39-112 (294)
185 KOG3045|consensus 98.9 7.3E-09 1.6E-13 69.6 7.1 85 2-123 183-267 (325)
186 TIGR00755 ksgA dimethyladenosi 98.9 2.3E-08 4.9E-13 68.1 9.6 70 2-93 32-104 (253)
187 PF03602 Cons_hypoth95: Conser 98.9 8.9E-09 1.9E-13 66.8 7.1 107 1-124 44-156 (183)
188 PF12147 Methyltransf_20: Puta 98.9 9.5E-08 2.1E-12 65.4 11.3 106 2-120 138-249 (311)
189 KOG3178|consensus 98.9 3.1E-08 6.7E-13 69.1 9.0 98 2-124 180-279 (342)
190 PF03141 Methyltransf_29: Puta 98.8 1.5E-09 3.3E-14 78.7 2.3 95 2-119 120-218 (506)
191 PRK11933 yebU rRNA (cytosine-C 98.8 7.6E-08 1.6E-12 70.6 11.0 107 1-122 115-244 (470)
192 PF01564 Spermine_synth: Sperm 98.8 2.2E-08 4.7E-13 67.9 7.5 105 2-120 79-191 (246)
193 COG2520 Predicted methyltransf 98.8 6E-08 1.3E-12 68.1 9.6 105 2-126 191-295 (341)
194 TIGR00478 tly hemolysin TlyA f 98.8 2.6E-08 5.7E-13 66.6 7.4 85 2-118 78-169 (228)
195 PF10672 Methyltrans_SAM: S-ad 98.8 2.8E-08 6.2E-13 68.4 7.7 109 2-125 126-243 (286)
196 COG2521 Predicted archaeal met 98.8 7.6E-09 1.7E-13 68.6 4.5 104 2-120 137-245 (287)
197 PF09243 Rsm22: Mitochondrial 98.8 5.2E-08 1.1E-12 67.0 8.7 107 2-125 36-144 (274)
198 TIGR03439 methyl_EasF probable 98.8 1.2E-07 2.5E-12 66.5 10.5 107 2-118 79-195 (319)
199 PF02527 GidB: rRNA small subu 98.8 1.6E-07 3.4E-12 61.0 10.2 98 2-120 51-148 (184)
200 PRK00536 speE spermidine synth 98.8 9.7E-08 2.1E-12 65.1 9.5 93 2-118 75-169 (262)
201 KOG2915|consensus 98.7 1.9E-07 4E-12 63.3 9.7 95 2-115 108-204 (314)
202 KOG1269|consensus 98.7 3.1E-08 6.7E-13 70.3 5.9 105 2-122 113-217 (364)
203 PF07942 N2227: N2227-like pro 98.7 2.5E-07 5.4E-12 63.2 9.5 103 2-117 59-199 (270)
204 PF03059 NAS: Nicotianamine sy 98.7 3E-07 6.5E-12 63.0 9.9 104 2-119 123-229 (276)
205 PRK11783 rlmL 23S rRNA m(2)G24 98.7 4.5E-07 9.7E-12 69.8 11.7 115 2-120 193-347 (702)
206 TIGR02143 trmA_only tRNA (urac 98.7 2E-07 4.4E-12 66.3 9.1 58 2-77 200-257 (353)
207 COG0500 SmtA SAM-dependent met 98.7 1.3E-06 2.8E-11 54.0 11.8 105 3-124 52-159 (257)
208 PF06962 rRNA_methylase: Putat 98.7 3.6E-07 7.7E-12 56.5 8.6 87 36-126 1-98 (140)
209 PRK05031 tRNA (uracil-5-)-meth 98.7 2.6E-07 5.6E-12 66.0 9.1 57 2-76 209-265 (362)
210 TIGR00308 TRM1 tRNA(guanine-26 98.7 2.8E-07 6E-12 65.9 9.1 99 2-119 47-146 (374)
211 KOG3420|consensus 98.6 6.5E-08 1.4E-12 59.8 4.7 75 1-93 50-124 (185)
212 PRK04148 hypothetical protein; 98.6 1.2E-06 2.7E-11 53.8 9.2 93 1-123 18-112 (134)
213 PF09445 Methyltransf_15: RNA 98.6 1.6E-07 3.4E-12 59.6 5.3 74 2-92 2-78 (163)
214 COG0030 KsgA Dimethyladenosine 98.6 2.8E-07 6.2E-12 62.5 6.8 70 2-91 33-103 (259)
215 KOG0820|consensus 98.6 3.8E-07 8.1E-12 61.9 7.0 71 2-91 61-131 (315)
216 PF13578 Methyltransf_24: Meth 98.5 4.3E-08 9.3E-13 58.0 2.1 103 4-120 1-105 (106)
217 COG4798 Predicted methyltransf 98.5 8.9E-07 1.9E-11 57.4 7.7 109 1-125 50-171 (238)
218 TIGR00006 S-adenosyl-methyltra 98.5 9.6E-07 2.1E-11 61.4 7.8 76 2-94 23-103 (305)
219 COG0116 Predicted N6-adenine-s 98.5 4E-06 8.7E-11 59.7 10.8 115 2-120 194-344 (381)
220 COG0742 N6-adenine-specific me 98.5 3.1E-06 6.8E-11 54.8 9.5 105 2-123 46-156 (187)
221 PF02384 N6_Mtase: N-6 DNA Met 98.5 1.3E-06 2.7E-11 61.1 8.3 111 2-119 49-182 (311)
222 PF01728 FtsJ: FtsJ-like methy 98.5 3.1E-07 6.7E-12 59.4 4.5 96 2-123 26-142 (181)
223 KOG3987|consensus 98.4 2.9E-08 6.4E-13 64.8 -0.3 90 2-118 115-205 (288)
224 PF00398 RrnaAD: Ribosomal RNA 98.4 4.8E-06 1E-10 57.0 9.3 85 2-109 33-120 (262)
225 PF01269 Fibrillarin: Fibrilla 98.4 1.2E-05 2.5E-10 53.4 10.6 100 1-119 75-177 (229)
226 COG0144 Sun tRNA and rRNA cyto 98.4 1.7E-05 3.7E-10 56.6 12.1 109 1-123 158-291 (355)
227 COG0293 FtsJ 23S rRNA methylas 98.4 7.8E-06 1.7E-10 53.7 9.4 99 1-125 47-164 (205)
228 COG2265 TrmA SAM-dependent met 98.3 4.3E-06 9.4E-11 60.9 8.7 70 2-89 296-368 (432)
229 PF08123 DOT1: Histone methyla 98.3 2.4E-06 5.3E-11 56.4 6.7 102 2-118 45-156 (205)
230 PF11968 DUF3321: Putative met 98.3 2E-06 4.4E-11 56.6 6.2 52 68-119 86-148 (219)
231 TIGR01444 fkbM_fam methyltrans 98.3 3.1E-06 6.7E-11 52.5 6.5 58 2-75 1-58 (143)
232 TIGR02987 met_A_Alw26 type II 98.3 1.2E-05 2.5E-10 60.2 10.4 83 2-92 34-121 (524)
233 KOG2730|consensus 98.3 1.4E-06 3E-11 57.5 4.2 95 2-113 97-195 (263)
234 COG0357 GidB Predicted S-adeno 98.2 1.1E-05 2.3E-10 53.6 8.2 97 2-118 70-166 (215)
235 PF04672 Methyltransf_19: S-ad 98.2 1.8E-05 3.9E-10 54.0 9.3 107 3-124 72-194 (267)
236 COG3897 Predicted methyltransf 98.2 7E-06 1.5E-10 53.3 6.9 101 2-124 82-183 (218)
237 PF05958 tRNA_U5-meth_tr: tRNA 98.2 5.4E-06 1.2E-10 59.1 6.8 58 2-77 199-256 (352)
238 KOG2352|consensus 98.2 2.4E-05 5.2E-10 57.1 9.9 103 1-121 50-162 (482)
239 KOG1331|consensus 98.2 2.1E-06 4.7E-11 58.6 4.1 96 2-123 48-146 (293)
240 COG4076 Predicted RNA methylas 98.2 5.1E-06 1.1E-10 53.7 5.6 96 2-117 35-132 (252)
241 COG4262 Predicted spermidine s 98.2 2.2E-05 4.7E-10 55.7 8.9 103 2-118 292-405 (508)
242 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 1.4E-05 3.1E-10 55.3 8.0 106 2-122 88-221 (283)
243 PLN02668 indole-3-acetate carb 98.2 2.2E-05 4.8E-10 56.3 8.9 125 1-125 65-242 (386)
244 COG0275 Predicted S-adenosylme 98.1 2E-05 4.3E-10 54.4 8.0 60 2-77 26-85 (314)
245 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 2.8E-05 6.1E-10 53.0 7.4 110 2-123 59-202 (256)
246 PF04816 DUF633: Family of unk 98.0 8.7E-05 1.9E-09 49.1 9.2 73 3-91 1-74 (205)
247 PF13679 Methyltransf_32: Meth 98.0 0.00012 2.6E-09 45.5 8.8 81 2-94 28-110 (141)
248 PF01795 Methyltransf_5: MraW 98.0 1.4E-05 3.1E-10 55.7 5.0 75 2-93 23-103 (310)
249 PF03492 Methyltransf_7: SAM d 97.9 3.9E-05 8.4E-10 54.4 6.7 121 1-125 18-188 (334)
250 PRK11760 putative 23S rRNA C24 97.9 9.7E-05 2.1E-09 52.2 8.1 82 1-111 213-294 (357)
251 COG1889 NOP1 Fibrillarin-like 97.9 0.00027 5.8E-09 46.4 9.2 98 2-119 79-179 (231)
252 KOG1122|consensus 97.8 0.0004 8.6E-09 50.1 10.1 106 2-123 244-374 (460)
253 KOG3201|consensus 97.8 3.5E-05 7.5E-10 48.8 4.2 106 2-120 32-140 (201)
254 PF05971 Methyltransf_10: Prot 97.8 0.00032 6.8E-09 48.9 8.6 81 2-97 105-191 (299)
255 KOG4589|consensus 97.8 0.00019 4.2E-09 46.5 7.0 100 1-126 71-190 (232)
256 KOG1709|consensus 97.7 0.00041 8.9E-09 46.0 7.8 100 2-119 104-205 (271)
257 COG5459 Predicted rRNA methyla 97.7 0.00019 4.1E-09 50.8 6.2 109 2-125 116-230 (484)
258 KOG2798|consensus 97.6 0.00046 9.9E-09 48.2 6.8 36 82-117 258-293 (369)
259 KOG0822|consensus 97.5 0.00027 5.8E-09 52.4 5.7 104 2-118 370-476 (649)
260 KOG2187|consensus 97.5 9.4E-05 2E-09 54.4 3.3 57 2-76 386-442 (534)
261 COG1189 Predicted rRNA methyla 97.5 0.00088 1.9E-08 45.0 7.6 91 2-118 82-176 (245)
262 KOG2793|consensus 97.5 0.0016 3.4E-08 44.2 8.6 101 2-119 89-198 (248)
263 PF02005 TRM: N2,N2-dimethylgu 97.4 0.0014 3E-08 47.3 8.1 102 2-120 52-154 (377)
264 PF04989 CmcI: Cephalosporin h 97.4 0.0017 3.6E-08 42.9 7.5 104 2-119 35-146 (206)
265 PF03141 Methyltransf_29: Puta 97.3 0.00022 4.7E-09 52.5 3.2 96 2-120 368-467 (506)
266 PF11312 DUF3115: Protein of u 97.3 0.0011 2.4E-08 46.3 6.3 123 2-124 89-246 (315)
267 COG2384 Predicted SAM-dependen 97.2 0.002 4.3E-08 42.8 6.6 76 2-92 19-94 (226)
268 PF02636 Methyltransf_28: Puta 97.2 0.0013 2.7E-08 44.9 6.0 53 2-57 21-73 (252)
269 KOG1099|consensus 97.2 0.0025 5.4E-08 42.8 6.7 99 2-118 44-161 (294)
270 PRK10742 putative methyltransf 97.2 0.0029 6.2E-08 43.0 7.1 79 2-93 91-174 (250)
271 KOG3115|consensus 97.1 0.0025 5.3E-08 42.1 6.3 44 3-57 64-107 (249)
272 COG4627 Uncharacterized protei 97.1 0.00011 2.4E-09 46.1 0.0 54 67-120 31-86 (185)
273 PF07091 FmrO: Ribosomal RNA m 96.9 0.0032 6.9E-08 42.8 5.7 78 2-97 108-185 (251)
274 KOG1501|consensus 96.9 0.0027 5.8E-08 46.5 5.3 98 2-115 69-170 (636)
275 KOG4058|consensus 96.9 0.0086 1.9E-07 37.6 6.6 103 2-125 75-177 (199)
276 PF06859 Bin3: Bicoid-interact 96.8 0.00082 1.8E-08 39.8 2.0 36 83-118 1-42 (110)
277 KOG2539|consensus 96.8 0.017 3.7E-07 42.6 8.4 110 3-125 204-320 (491)
278 cd00315 Cyt_C5_DNA_methylase C 96.7 0.022 4.7E-07 39.5 8.6 73 1-96 1-75 (275)
279 COG4301 Uncharacterized conser 96.7 0.051 1.1E-06 37.2 9.9 110 2-122 81-196 (321)
280 PF01861 DUF43: Protein of unk 96.7 0.025 5.4E-07 38.3 8.5 83 34-123 67-151 (243)
281 COG1565 Uncharacterized conser 96.4 0.014 3.1E-07 41.6 6.1 54 2-58 80-133 (370)
282 COG1064 AdhP Zn-dependent alco 96.4 0.032 7E-07 39.7 7.7 86 6-122 175-261 (339)
283 KOG1562|consensus 96.4 0.028 6E-07 39.2 7.2 104 2-119 124-235 (337)
284 KOG1253|consensus 96.2 0.008 1.7E-07 44.5 4.1 100 2-119 112-215 (525)
285 PF04445 SAM_MT: Putative SAM- 96.1 0.014 3E-07 39.5 4.7 80 2-94 78-162 (234)
286 KOG1596|consensus 96.0 0.058 1.3E-06 36.7 7.2 98 2-119 159-260 (317)
287 PRK11524 putative methyltransf 96.0 0.016 3.4E-07 40.3 4.7 42 2-56 211-252 (284)
288 PF05711 TylF: Macrocin-O-meth 96.0 0.039 8.5E-07 37.7 6.3 111 2-123 77-215 (248)
289 COG0286 HsdM Type I restrictio 95.9 0.2 4.4E-06 37.6 10.5 107 2-119 189-325 (489)
290 KOG2198|consensus 95.9 0.25 5.5E-06 35.6 10.4 111 2-124 158-300 (375)
291 PF10354 DUF2431: Domain of un 95.9 0.24 5.3E-06 31.7 10.1 58 68-125 56-130 (166)
292 cd08283 FDH_like_1 Glutathione 95.8 0.15 3.2E-06 36.9 9.1 100 2-120 187-306 (386)
293 PTZ00357 methyltransferase; Pr 95.8 0.085 1.9E-06 41.2 7.9 106 2-115 703-830 (1072)
294 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.092 2E-06 37.8 7.4 98 2-119 55-153 (380)
295 KOG1227|consensus 95.7 0.014 3E-07 40.8 3.2 97 2-118 197-294 (351)
296 PHA01634 hypothetical protein 95.4 0.14 3E-06 31.5 6.6 44 2-57 31-74 (156)
297 PRK13699 putative methylase; P 95.4 0.041 9E-07 37.0 4.8 43 2-57 166-208 (227)
298 PF11599 AviRa: RRNA methyltra 95.2 0.046 9.9E-07 36.5 4.4 44 2-54 54-97 (246)
299 KOG2920|consensus 95.0 0.0083 1.8E-07 41.4 0.5 105 2-118 119-232 (282)
300 PF00145 DNA_methylase: C-5 cy 94.8 0.18 3.9E-06 35.2 6.9 72 1-97 1-75 (335)
301 COG1063 Tdh Threonine dehydrog 94.8 0.56 1.2E-05 33.7 9.3 99 2-125 171-274 (350)
302 PRK09880 L-idonate 5-dehydroge 94.6 0.3 6.6E-06 34.6 7.6 94 3-121 173-267 (343)
303 PRK09424 pntA NAD(P) transhydr 94.6 0.73 1.6E-05 34.9 9.7 96 2-121 167-286 (509)
304 PF02254 TrkA_N: TrkA-N domain 94.5 0.21 4.5E-06 29.5 5.8 90 7-120 3-96 (116)
305 COG0686 Ald Alanine dehydrogen 94.2 0.16 3.5E-06 36.0 5.2 75 34-117 191-265 (371)
306 PRK11524 putative methyltransf 94.2 0.089 1.9E-06 36.6 4.1 54 66-119 8-79 (284)
307 COG3129 Predicted SAM-dependen 94.1 0.14 3.1E-06 34.7 4.6 80 2-96 81-166 (292)
308 PRK01747 mnmC bifunctional tRN 94.0 0.53 1.2E-05 36.7 8.2 115 2-119 60-205 (662)
309 KOG2352|consensus 93.8 0.17 3.7E-06 37.6 5.0 102 2-119 298-415 (482)
310 PF11899 DUF3419: Protein of u 93.7 0.24 5.1E-06 36.1 5.6 60 66-125 276-339 (380)
311 KOG0024|consensus 93.7 0.5 1.1E-05 33.6 6.9 100 2-125 172-278 (354)
312 KOG2651|consensus 93.1 0.17 3.6E-06 36.8 3.9 39 2-52 156-194 (476)
313 KOG2671|consensus 93.1 0.1 2.2E-06 37.4 2.8 101 3-119 212-353 (421)
314 PF03269 DUF268: Caenorhabditi 92.6 0.12 2.7E-06 32.9 2.4 40 81-120 61-111 (177)
315 cd05188 MDR Medium chain reduc 92.4 0.86 1.9E-05 30.6 6.7 93 2-120 137-232 (271)
316 PF07757 AdoMet_MTase: Predict 92.4 0.085 1.9E-06 31.3 1.4 28 2-42 61-88 (112)
317 PF00107 ADH_zinc_N: Zinc-bind 92.3 1.5 3.3E-05 26.2 7.4 88 10-123 2-92 (130)
318 COG0270 Dcm Site-specific DNA 92.2 1.8 3.8E-05 30.9 8.2 75 1-97 4-81 (328)
319 COG0541 Ffh Signal recognition 92.2 1.1 2.4E-05 33.2 7.2 105 3-122 103-223 (451)
320 PF07279 DUF1442: Protein of u 92.0 2.5 5.4E-05 28.4 8.1 78 33-120 68-148 (218)
321 PF02719 Polysacc_synt_2: Poly 92.0 1.3 2.9E-05 31.1 7.2 80 6-97 3-91 (293)
322 PRK03659 glutathione-regulated 91.9 0.84 1.8E-05 35.3 6.7 91 8-122 406-500 (601)
323 TIGR00561 pntA NAD(P) transhyd 91.8 1 2.3E-05 34.1 6.9 37 82-118 246-282 (511)
324 KOG0821|consensus 91.7 0.28 6E-06 33.2 3.4 57 2-76 53-109 (326)
325 cd08254 hydroxyacyl_CoA_DH 6-h 91.7 0.99 2.1E-05 31.5 6.5 92 2-120 168-263 (338)
326 PRK13699 putative methylase; P 91.6 0.3 6.4E-06 33.0 3.6 51 68-118 3-70 (227)
327 cd08232 idonate-5-DH L-idonate 91.0 2 4.4E-05 30.2 7.5 93 3-120 169-262 (339)
328 PF05050 Methyltransf_21: Meth 90.8 1.1 2.4E-05 27.8 5.5 39 5-53 1-42 (167)
329 PRK05708 2-dehydropantoate 2-r 90.7 3.7 8.1E-05 28.9 8.5 100 1-122 3-106 (305)
330 TIGR00518 alaDH alanine dehydr 90.5 0.67 1.5E-05 33.6 4.7 76 34-118 190-265 (370)
331 PF05206 TRM13: Methyltransfer 90.3 0.55 1.2E-05 32.4 4.0 37 2-44 21-57 (259)
332 COG1255 Uncharacterized protei 89.8 2.8 6E-05 25.4 6.1 89 2-123 16-105 (129)
333 KOG0780|consensus 89.7 1.7 3.8E-05 31.9 6.1 81 34-122 131-224 (483)
334 PF06016 Reovirus_L2: Reovirus 89.2 1.6 3.4E-05 36.5 6.2 90 2-115 825-920 (1289)
335 COG3510 CmcI Cephalosporin hyd 89.1 2.4 5.1E-05 28.2 5.9 102 2-120 72-180 (237)
336 PRK10669 putative cation:proto 89.0 2.3 5E-05 32.6 6.8 89 7-119 422-514 (558)
337 PRK10458 DNA cytosine methylas 88.9 2.4 5.3E-05 31.8 6.7 42 1-54 89-130 (467)
338 COG2933 Predicted SAM-dependen 88.8 3.4 7.3E-05 28.9 6.7 31 1-44 213-243 (358)
339 PRK03562 glutathione-regulated 88.6 2.3 5E-05 33.1 6.6 89 8-120 406-498 (621)
340 PF01488 Shikimate_DH: Shikima 88.0 1.9 4.1E-05 26.5 4.9 75 2-96 14-88 (135)
341 TIGR00675 dcm DNA-methyltransf 87.9 5.8 0.00013 28.1 7.8 71 3-96 1-72 (315)
342 cd08230 glucose_DH Glucose deh 87.9 4.6 9.9E-05 28.8 7.5 34 82-121 237-270 (355)
343 KOG1209|consensus 87.9 4 8.6E-05 27.8 6.4 74 2-95 9-93 (289)
344 PRK09496 trkA potassium transp 86.9 10 0.00023 28.0 9.6 93 1-118 1-97 (453)
345 cd08237 ribitol-5-phosphate_DH 86.9 8.2 0.00018 27.4 8.2 69 34-121 189-257 (341)
346 TIGR01202 bchC 2-desacetyl-2-h 86.8 5.9 0.00013 27.7 7.4 84 3-121 148-232 (308)
347 PRK05599 hypothetical protein; 86.6 6.9 0.00015 26.3 7.4 77 1-93 1-87 (246)
348 COG1086 Predicted nucleoside-d 86.1 7.3 0.00016 30.1 7.7 81 5-97 254-339 (588)
349 PRK05786 fabG 3-ketoacyl-(acyl 85.9 7.8 0.00017 25.6 9.9 103 2-121 7-136 (238)
350 PF03686 UPF0146: Uncharacteri 85.9 2.9 6.2E-05 25.7 4.6 90 2-124 16-106 (127)
351 KOG1201|consensus 85.8 9.1 0.0002 27.1 7.6 77 3-96 41-127 (300)
352 PF03514 GRAS: GRAS domain fam 85.5 12 0.00026 27.3 10.8 114 2-122 113-245 (374)
353 cd01842 SGNH_hydrolase_like_5 85.5 3.4 7.4E-05 27.0 5.1 41 80-120 47-99 (183)
354 COG1748 LYS9 Saccharopine dehy 84.8 5.2 0.00011 29.4 6.3 72 1-91 2-76 (389)
355 KOG2078|consensus 84.7 1 2.2E-05 33.4 2.7 58 2-75 252-309 (495)
356 COG1568 Predicted methyltransf 84.4 5.3 0.00011 28.2 5.9 80 34-120 175-260 (354)
357 PRK08324 short chain dehydroge 84.3 19 0.0004 28.5 9.7 101 3-120 425-557 (681)
358 PRK07417 arogenate dehydrogena 83.8 11 0.00024 26.1 7.5 87 1-116 1-87 (279)
359 PRK06940 short chain dehydroge 83.8 12 0.00025 25.7 9.2 93 11-119 11-124 (275)
360 PRK08267 short chain dehydroge 82.8 12 0.00026 25.2 8.6 73 3-93 4-87 (260)
361 cd08293 PTGR2 Prostaglandin re 82.7 8.8 0.00019 27.0 6.8 91 3-120 158-254 (345)
362 PF13561 adh_short_C2: Enoyl-( 82.3 11 0.00024 25.1 6.9 83 33-122 19-135 (241)
363 PLN03154 putative allyl alcoho 81.8 14 0.0003 26.4 7.6 92 3-120 162-258 (348)
364 PRK06249 2-dehydropantoate 2-r 81.7 14 0.0003 26.1 7.5 36 82-120 71-106 (313)
365 PRK09496 trkA potassium transp 81.6 7.4 0.00016 28.7 6.3 64 8-90 237-304 (453)
366 TIGR00027 mthyl_TIGR00027 meth 81.5 15 0.00032 25.4 8.5 101 3-118 85-195 (260)
367 COG5379 BtaA S-adenosylmethion 80.7 7.3 0.00016 27.8 5.5 68 42-119 294-365 (414)
368 TIGR03451 mycoS_dep_FDH mycoth 80.5 8.5 0.00018 27.5 6.2 72 36-121 203-277 (358)
369 COG0863 DNA modification methy 80.4 4.8 0.00011 27.8 4.8 43 2-57 225-267 (302)
370 COG1893 ApbA Ketopantoate redu 80.3 17 0.00037 25.8 7.4 37 82-121 66-102 (307)
371 PRK08265 short chain dehydroge 80.3 15 0.00034 24.8 8.8 72 3-93 9-90 (261)
372 TIGR00497 hsdM type I restrict 80.2 24 0.00051 26.9 10.2 108 2-119 220-354 (501)
373 cd05278 FDH_like Formaldehyde 79.3 11 0.00025 26.4 6.4 32 82-119 235-266 (347)
374 PF12692 Methyltransf_17: S-ad 78.9 3.5 7.6E-05 26.1 3.2 94 2-118 31-132 (160)
375 PRK07576 short chain dehydroge 78.7 18 0.00039 24.6 8.7 71 7-92 15-95 (264)
376 PRK08340 glucose-1-dehydrogena 78.5 15 0.00032 24.8 6.6 76 1-93 1-86 (259)
377 PF02558 ApbA: Ketopantoate re 78.0 13 0.00029 22.8 6.0 37 81-120 65-101 (151)
378 PRK08655 prephenate dehydrogen 77.6 25 0.00054 26.3 7.9 37 1-47 1-37 (437)
379 KOG0023|consensus 77.6 17 0.00036 26.3 6.6 87 9-122 192-281 (360)
380 cd08261 Zn_ADH7 Alcohol dehydr 77.4 14 0.0003 26.0 6.4 93 2-120 162-258 (337)
381 PRK12939 short chain dehydroge 77.2 18 0.0004 23.9 8.3 75 3-93 10-94 (250)
382 KOG2912|consensus 76.4 4.9 0.00011 28.9 3.7 55 34-92 126-187 (419)
383 PRK09072 short chain dehydroge 75.6 22 0.00047 24.0 8.5 74 3-93 8-90 (263)
384 PLN02586 probable cinnamyl alc 75.0 21 0.00047 25.6 6.9 32 83-120 247-278 (360)
385 KOG1098|consensus 74.8 3 6.6E-05 32.5 2.6 33 2-44 47-79 (780)
386 PF00072 Response_reg: Respons 74.6 13 0.00029 21.1 6.3 76 37-120 1-78 (112)
387 PLN00203 glutamyl-tRNA reducta 74.0 30 0.00065 26.6 7.6 103 3-125 269-372 (519)
388 PRK07502 cyclohexadienyl dehyd 73.0 23 0.00051 24.8 6.6 90 2-117 8-97 (307)
389 cd08294 leukotriene_B4_DH_like 72.4 30 0.00064 24.1 7.0 83 9-119 155-240 (329)
390 PRK06223 malate dehydrogenase; 71.7 32 0.00069 24.1 7.6 37 1-48 3-40 (307)
391 PRK07533 enoyl-(acyl carrier p 71.7 28 0.00061 23.5 8.8 75 3-93 13-98 (258)
392 cd08245 CAD Cinnamyl alcohol d 71.6 31 0.00068 24.0 7.8 90 2-120 165-256 (330)
393 COG0569 TrkA K+ transport syst 71.5 25 0.00053 23.7 6.1 68 1-90 1-73 (225)
394 PRK10309 galactitol-1-phosphat 71.5 28 0.00061 24.6 6.8 21 101-121 241-261 (347)
395 KOG2811|consensus 71.4 6.9 0.00015 28.6 3.5 21 2-22 185-205 (420)
396 PTZ00142 6-phosphogluconate de 71.3 32 0.00069 26.1 7.2 90 9-116 8-97 (470)
397 TIGR03366 HpnZ_proposed putati 70.9 22 0.00048 24.4 6.0 34 82-121 186-219 (280)
398 PRK07326 short chain dehydroge 70.9 27 0.00058 23.0 6.5 75 2-93 8-92 (237)
399 PRK09548 PTS system ascorbate- 70.8 26 0.00057 27.4 6.6 26 67-92 538-563 (602)
400 PRK07523 gluconate 5-dehydroge 70.5 29 0.00063 23.2 8.2 75 3-93 13-97 (255)
401 COG0373 HemA Glutamyl-tRNA red 70.4 35 0.00076 25.5 7.0 41 82-125 237-277 (414)
402 cd08281 liver_ADH_like1 Zinc-d 70.3 37 0.00081 24.4 8.1 72 36-121 218-291 (371)
403 PF01555 N6_N4_Mtase: DNA meth 70.0 3.4 7.3E-05 27.1 1.8 21 99-119 35-55 (231)
404 PRK10867 signal recognition pa 69.8 43 0.00093 25.2 7.5 41 82-122 182-224 (433)
405 cd08236 sugar_DH NAD(P)-depend 69.6 31 0.00068 24.2 6.7 33 82-120 226-258 (343)
406 cd08234 threonine_DH_like L-th 69.0 36 0.00079 23.7 8.7 34 81-120 224-257 (334)
407 PF07101 DUF1363: Protein of u 68.9 5 0.00011 23.3 2.0 17 4-20 7-23 (124)
408 PRK07109 short chain dehydroge 68.9 39 0.00085 24.0 9.9 75 3-93 11-95 (334)
409 PRK12921 2-dehydropantoate 2-r 68.8 36 0.00079 23.6 8.7 35 82-119 67-101 (305)
410 PF14737 DUF4470: Domain of un 68.7 16 0.00034 21.2 4.2 43 2-49 26-68 (100)
411 COG0604 Qor NADPH:quinone redu 68.6 31 0.00066 24.7 6.4 92 3-121 146-242 (326)
412 TIGR02822 adh_fam_2 zinc-bindi 68.2 40 0.00086 23.8 9.3 67 34-121 189-255 (329)
413 PF10609 ParA: ParA/MinD ATPas 67.2 20 0.00042 20.2 4.2 46 2-57 4-49 (81)
414 cd08239 THR_DH_like L-threonin 66.9 32 0.0007 24.2 6.3 73 34-120 187-262 (339)
415 PRK06522 2-dehydropantoate 2-r 66.7 40 0.00087 23.3 8.7 100 1-120 1-100 (304)
416 cd05292 LDH_2 A subgroup of L- 66.1 44 0.00096 23.6 9.6 101 1-119 1-115 (308)
417 PRK08618 ornithine cyclodeamin 66.1 36 0.00077 24.3 6.3 68 34-119 152-220 (325)
418 PF02153 PDH: Prephenate dehyd 66.0 37 0.00079 23.3 6.2 66 34-117 11-76 (258)
419 cd08295 double_bond_reductase_ 66.0 44 0.00095 23.5 7.7 92 3-120 155-251 (338)
420 PRK05855 short chain dehydroge 65.7 57 0.0012 24.7 9.1 76 3-94 318-403 (582)
421 cd08278 benzyl_alcohol_DH Benz 65.5 28 0.00062 24.9 5.8 34 81-120 252-285 (365)
422 PRK07984 enoyl-(acyl carrier p 65.4 41 0.00088 23.0 9.3 76 2-93 8-94 (262)
423 KOG3924|consensus 65.4 23 0.00051 26.2 5.2 104 2-120 195-308 (419)
424 PF10237 N6-adenineMlase: Prob 64.7 35 0.00075 21.9 8.1 39 81-119 84-122 (162)
425 cd08255 2-desacetyl-2-hydroxye 64.7 41 0.00089 22.7 8.3 88 3-120 101-190 (277)
426 PRK08306 dipicolinate synthase 64.1 39 0.00084 23.8 6.1 85 3-118 155-239 (296)
427 cd08285 NADP_ADH NADP(H)-depen 64.1 49 0.0011 23.4 7.1 33 82-120 234-266 (351)
428 COG0552 FtsY Signal recognitio 64.0 53 0.0012 23.8 7.8 42 81-122 219-268 (340)
429 PLN02427 UDP-apiose/xylose syn 64.0 24 0.00051 25.5 5.2 78 1-92 15-95 (386)
430 TIGR02825 B4_12hDH leukotriene 63.5 48 0.001 23.1 9.6 91 3-120 142-237 (325)
431 PRK05854 short chain dehydroge 62.7 51 0.0011 23.1 10.8 77 3-93 17-103 (313)
432 PRK12549 shikimate 5-dehydroge 62.6 32 0.0007 24.0 5.5 21 34-54 151-171 (284)
433 COG0287 TyrA Prephenate dehydr 62.5 41 0.0009 23.6 6.0 89 2-116 5-94 (279)
434 PF09960 DUF2194: Uncharacteri 62.5 39 0.00084 26.5 6.2 78 34-120 53-136 (585)
435 PF01262 AlaDh_PNT_C: Alanine 62.3 3 6.6E-05 26.6 0.4 19 34-52 43-61 (168)
436 PRK05872 short chain dehydroge 61.7 51 0.0011 22.8 8.8 75 3-94 12-96 (296)
437 TIGR02356 adenyl_thiF thiazole 61.7 44 0.00095 22.0 6.0 31 2-43 23-54 (202)
438 PRK06701 short chain dehydroge 61.1 52 0.0011 22.8 8.9 103 2-120 48-181 (290)
439 TIGR00872 gnd_rel 6-phosphoglu 60.9 55 0.0012 22.9 6.5 89 1-116 1-89 (298)
440 PRK15057 UDP-glucose 6-dehydro 60.6 65 0.0014 23.7 8.8 35 9-53 7-41 (388)
441 PRK06500 short chain dehydroge 60.2 47 0.001 22.0 8.8 70 6-93 11-90 (249)
442 PRK06181 short chain dehydroge 59.9 50 0.0011 22.2 9.7 75 3-93 4-88 (263)
443 cd05285 sorbitol_DH Sorbitol d 59.6 59 0.0013 22.9 9.0 34 81-120 232-265 (343)
444 PRK10537 voltage-gated potassi 59.3 40 0.00086 24.9 5.7 87 7-119 245-335 (393)
445 PLN02514 cinnamyl-alcohol dehy 58.4 66 0.0014 23.0 7.8 33 83-121 244-276 (357)
446 PF01558 POR: Pyruvate ferredo 58.3 34 0.00074 21.7 4.7 32 81-120 55-86 (173)
447 PF14252 DUF4347: Domain of un 58.1 48 0.001 21.3 7.2 77 33-122 21-100 (165)
448 cd05298 GH4_GlvA_pagL_like Gly 58.0 34 0.00073 25.7 5.2 47 1-52 1-47 (437)
449 COG0300 DltE Short-chain dehyd 57.6 63 0.0014 22.6 7.0 79 3-96 9-97 (265)
450 KOG2782|consensus 57.1 5.9 0.00013 27.0 1.0 41 3-54 47-87 (303)
451 PF13872 AAA_34: P-loop contai 57.1 69 0.0015 22.9 6.5 85 34-123 91-183 (303)
452 PF07090 DUF1355: Protein of u 57.0 15 0.00032 24.0 2.8 38 82-119 66-107 (177)
453 TIGR00873 gnd 6-phosphoglucona 56.6 75 0.0016 24.1 6.8 35 9-52 6-40 (467)
454 PF02056 Glyco_hydro_4: Family 56.3 51 0.0011 21.6 5.2 46 2-52 1-46 (183)
455 cd08266 Zn_ADH_like1 Alcohol d 56.2 48 0.001 22.9 5.6 32 82-120 234-265 (342)
456 PTZ00117 malate dehydrogenase; 56.2 71 0.0015 22.8 7.3 36 2-48 7-43 (319)
457 PRK08177 short chain dehydroge 55.5 56 0.0012 21.4 8.4 68 6-93 6-81 (225)
458 PF02086 MethyltransfD12: D12 55.3 25 0.00055 23.7 4.0 40 2-54 23-62 (260)
459 PRK06914 short chain dehydroge 55.1 64 0.0014 21.9 9.4 77 3-93 6-91 (280)
460 COG4889 Predicted helicase [Ge 55.0 1.3E+02 0.0029 25.5 8.3 99 4-119 185-285 (1518)
461 PLN02494 adenosylhomocysteinas 55.0 46 0.001 25.4 5.4 82 9-121 261-342 (477)
462 PLN03209 translocon at the inn 55.0 1E+02 0.0022 24.2 9.0 79 6-93 85-169 (576)
463 PRK07454 short chain dehydroge 55.0 59 0.0013 21.5 7.1 75 3-93 9-93 (241)
464 KOG2360|consensus 54.8 51 0.0011 24.5 5.4 61 2-77 216-276 (413)
465 COG0031 CysK Cysteine synthase 54.0 21 0.00045 25.4 3.4 34 4-44 173-206 (300)
466 PF14740 DUF4471: Domain of un 53.9 17 0.00038 25.6 2.9 32 82-118 221-252 (289)
467 COG3320 Putative dehydrogenase 53.8 89 0.0019 23.1 6.5 85 6-95 5-99 (382)
468 PRK07774 short chain dehydroge 53.3 64 0.0014 21.4 8.5 75 3-93 9-93 (250)
469 COG3288 PntA NAD/NADP transhyd 53.2 25 0.00054 25.3 3.6 36 82-117 243-278 (356)
470 PRK00094 gpsA NAD(P)H-dependen 52.9 77 0.0017 22.2 7.9 101 1-119 2-104 (325)
471 TIGR01771 L-LDH-NAD L-lactate 52.9 80 0.0017 22.3 8.5 79 34-119 21-112 (299)
472 PLN02688 pyrroline-5-carboxyla 52.7 71 0.0015 21.7 7.1 91 1-117 1-92 (266)
473 PRK08762 molybdopterin biosynt 52.2 46 0.001 24.3 5.0 31 2-43 137-168 (376)
474 PRK06153 hypothetical protein; 52.0 21 0.00045 26.4 3.2 31 2-43 178-209 (393)
475 PRK10538 malonic semialdehyde 52.0 69 0.0015 21.3 6.5 74 1-93 1-84 (248)
476 PRK00066 ldh L-lactate dehydro 51.9 85 0.0018 22.4 8.5 102 2-119 8-121 (315)
477 PRK06079 enoyl-(acyl carrier p 51.6 72 0.0016 21.4 8.6 73 3-93 10-93 (252)
478 PF04378 RsmJ: Ribosomal RNA s 51.6 78 0.0017 21.9 6.2 77 34-118 79-162 (245)
479 PRK05476 S-adenosyl-L-homocyst 51.5 1E+02 0.0022 23.2 7.0 87 3-123 215-302 (425)
480 PRK12475 thiamine/molybdopteri 51.4 55 0.0012 23.6 5.2 33 2-44 26-58 (338)
481 PRK06274 indolepyruvate oxidor 51.2 38 0.00083 22.1 4.2 31 81-119 65-95 (197)
482 cd05213 NAD_bind_Glutamyl_tRNA 51.2 86 0.0019 22.2 7.8 38 2-49 180-217 (311)
483 PRK06194 hypothetical protein; 50.9 77 0.0017 21.6 6.3 76 3-94 9-94 (287)
484 PF01210 NAD_Gly3P_dh_N: NAD-d 50.8 60 0.0013 20.3 6.7 94 9-118 6-101 (157)
485 cd03143 A4_beta-galactosidase_ 50.8 42 0.00091 20.8 4.2 37 82-121 52-88 (154)
486 PRK07024 short chain dehydroge 50.5 75 0.0016 21.3 6.3 75 2-93 4-88 (257)
487 PRK05396 tdh L-threonine 3-deh 50.5 86 0.0019 22.0 6.8 34 82-121 231-264 (341)
488 PRK07688 thiamine/molybdopteri 50.5 54 0.0012 23.7 5.1 32 2-43 26-57 (339)
489 PRK07904 short chain dehydroge 50.1 77 0.0017 21.4 7.0 78 2-93 10-97 (253)
490 PF11899 DUF3419: Protein of u 49.8 45 0.00098 24.6 4.6 20 34-53 57-76 (380)
491 TIGR02354 thiF_fam2 thiamine b 49.8 74 0.0016 21.0 5.9 29 82-112 109-137 (200)
492 PRK08537 2-oxoglutarate ferred 49.4 68 0.0015 20.5 5.3 30 82-119 66-95 (177)
493 TIGR00507 aroE shikimate 5-deh 49.2 85 0.0019 21.6 6.6 71 2-94 119-189 (270)
494 PRK12548 shikimate 5-dehydroge 49.0 60 0.0013 22.7 5.0 15 82-96 198-212 (289)
495 cd05281 TDH Threonine dehydrog 48.8 93 0.002 21.9 6.9 33 82-120 230-262 (341)
496 TIGR02853 spore_dpaA dipicolin 48.7 56 0.0012 22.9 4.9 32 9-49 158-189 (287)
497 cd05197 GH4_glycoside_hydrolas 48.5 56 0.0012 24.4 5.0 45 1-50 1-45 (425)
498 PF03435 Saccharop_dh: Sacchar 48.4 90 0.002 22.7 6.1 72 3-91 1-75 (386)
499 PRK06853 indolepyruvate oxidor 48.3 44 0.00096 21.8 4.1 30 82-119 67-96 (197)
500 PRK07889 enoyl-(acyl carrier p 48.1 84 0.0018 21.2 8.9 102 2-121 9-146 (256)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=6.8e-27 Score=155.34 Aligned_cols=113 Identities=42% Similarity=0.633 Sum_probs=105.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||||.++..+++..+ ..+++++|+|+.|+..++++....+.. +++|+.+|++++|++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-----------~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~dAe~LPf~ 116 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-----------TGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGDAENLPFP 116 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-----------CceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEechhhCCCC
Confidence 4799999999999999999875 579999999999999999999887654 599999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
+++||+|.++++++++++++++|++++|+|||||++++.|++.+...++
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 9999999999999999999999999999999999999999999887654
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.94 E-value=2.9e-26 Score=153.15 Aligned_cols=113 Identities=35% Similarity=0.559 Sum_probs=91.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||.++..+++..+ +..+++++|+|++|++.++++....+.. +++++.+|++++|+++
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~----------~~~~v~~vD~s~~ML~~a~~k~~~~~~~-----~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVG----------PNGKVVGVDISPGMLEVARKKLKREGLQ-----NIEFVQGDAEDLPFPD 114 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-------------EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-T
T ss_pred EEEEeCCChHHHHHHHHHHCC----------CccEEEEecCCHHHHHHHHHHHHhhCCC-----CeeEEEcCHHHhcCCC
Confidence 699999999999999988865 4679999999999999999999876654 8999999999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
++||.|++.+++++++++.+.+.+++|+|||||++.++|++.+....+
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~ 162 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL 162 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence 999999999999999999999999999999999999999999887554
No 3
>KOG1540|consensus
Probab=99.92 E-value=2e-24 Score=142.47 Aligned_cols=122 Identities=55% Similarity=0.785 Sum_probs=108.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||++||||.++..++++....... ...+|+++|+|++|+..++++....++.+ ++++.|+++|++++|++
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~-----~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGD-----RESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCC-----CCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeCCcccCCCC
Confidence 789999999999999999998744332 35899999999999999999987665554 23599999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
+.+||++.+.+++.+++++++.|.+++|+|||||++++.|++..+...+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l 223 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPL 223 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHH
Confidence 9999999999999999999999999999999999999999998876544
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.89 E-value=2.1e-22 Score=137.00 Aligned_cols=111 Identities=31% Similarity=0.453 Sum_probs=96.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|..+..+++..+ +..+++++|+|++|++.++++... .... .+++++..|+.++|+
T Consensus 76 ~VLDlGcGtG~~~~~la~~~~----------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~----~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 76 RVLDLCCGSGDLAFLLSEKVG----------SDGKVMGLDFSSEQLAVAASRQELKAKSCY----KNIEWIEGDATDLPF 141 (261)
T ss_pred EEEEECCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHhhhhhhccC----CCeEEEEcccccCCC
Confidence 699999999999988887653 246899999999999999877542 1111 278999999999999
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
++++||+|++.+++++++++..++.++.++|||||++++.++..+..
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 88999999999999999999999999999999999999999987664
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.88 E-value=9.5e-22 Score=114.25 Aligned_cols=95 Identities=29% Similarity=0.428 Sum_probs=83.6
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 83 (131)
||+|||+|..+..+++. + ..+++++|+++++++.++++.... ++.+...|...+++++++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-----------~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-----------GASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPFPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-----------TCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS-TT-
T ss_pred CEecCcCCHHHHHHHhc-c-----------CCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCcccccc
Confidence 79999999999999887 3 689999999999999999987653 566999999999999999
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
||+|++..++++++++.+++.++.|+|||||++++
T Consensus 61 fD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999999999999975
No 6
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.87 E-value=5e-21 Score=120.70 Aligned_cols=106 Identities=21% Similarity=0.352 Sum_probs=93.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++.+. +..+++++|+|+++++.++++++..+.+ +++++..|+.+++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~----------~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELN----------PGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIEDLPQE 69 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHST----------TTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTCGCGC
T ss_pred CEEEEecCcCcHHHHHHHHhcC----------CCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhccccc
Confidence 3799999999999999996543 3688999999999999999998877655 8999999999876
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++ +.||+|++..+++++.+....++++.+.|+++|++++.+..
T Consensus 70 ~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 44 78999999999999999999999999999999999988765
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.85 E-value=1.6e-20 Score=125.66 Aligned_cols=111 Identities=34% Similarity=0.493 Sum_probs=97.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.+..... ++.++..|....+++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG----------PEGHVIGLDFSENMLSVGRQKVKDAGLH-----NVELVHGNAMELPFD 111 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEechhcCCCC
Confidence 3699999999999999988764 3568999999999999999988765543 789999999888777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.++||+|++.+++++.++....+.++.++|+|||++++.+.+.+..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 7899999999999999999999999999999999999988766543
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.85 E-value=1.9e-20 Score=112.16 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=85.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~ 80 (131)
+|||+|||+|..+..+++..+ ..+++++|+|+++++.++++.......+ +++++..|+ .... .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~-~ 67 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFP-----------GARVVGVDISPEMLEIARERAAEEGLSD----RITFVQGDAEFDPD-F 67 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHT-----------TSEEEEEESSHHHHHHHHHHHHHTTTTT----TEEEEESCCHGGTT-T
T ss_pred EEEEEcCcCCHHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEECccccCcc-c
Confidence 699999999999999999554 7899999999999999999996555554 999999999 3322 2
Q ss_pred CCCeeEEEEcc-ccccc---cCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+.||+|++.. .++++ ++..+.+.++.+.|+|||++++.++
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 35699999998 44433 4568899999999999999998753
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.84 E-value=4.9e-20 Score=129.55 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=94.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+..+ +++++..|+.+.++++
T Consensus 121 ~VLDiGCG~G~~~~~La~~~------------g~~v~gvD~s~~~i~~a~~~~~~~g~~~----~v~~~~~D~~~~~~~~ 184 (340)
T PLN02244 121 RIVDVGCGIGGSSRYLARKY------------GANVKGITLSPVQAARANALAAAQGLSD----KVSFQVADALNQPFED 184 (340)
T ss_pred eEEEecCCCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEEcCcccCCCCC
Confidence 69999999999999888864 4689999999999999999887766553 7999999999988888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+++++++...++.++.++|||||+++++++.
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999999999999999999999999999998754
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.83 E-value=5.5e-20 Score=127.92 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=91.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|.++.+++.++++........ ++.++..+++++++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~-------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~----~i~~~~~dae~l~~~~ 196 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARM-------------GATVTGVDAVDKNVKIARLHADMDPVTS----TIEYLCTTAEKLADEG 196 (322)
T ss_pred EEEEeeCCCCHHHHHHHHc-------------CCEEEEEeCCHHHHHHHHHHHHhcCccc----ceeEEecCHHHhhhcc
Confidence 6999999999998877753 5789999999999999998765433222 7899999998887777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++.++|||||.+++.....
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 899999999999999999999999999999999999876544
No 11
>KOG4300|consensus
Probab=99.82 E-value=6.6e-20 Score=117.98 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=93.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCcee-EEecccccCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLR-FLEANAEELP-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~ 79 (131)
.+||+|||||..-- .++.. +..+++++|+++.|-+.+.+.+...... ++. |+.++.++++ +
T Consensus 79 ~vLEvgcGtG~Nfk----fy~~~--------p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge~l~~l 141 (252)
T KOG4300|consen 79 DVLEVGCGTGANFK----FYPWK--------PINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGENLPQL 141 (252)
T ss_pred ceEEecccCCCCcc----cccCC--------CCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechhcCccc
Confidence 47999999997632 22211 3678999999999999999888776433 565 9999999987 7
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
.+.+||.|++.++++...++.+.|.++.++|+|||++++.||...+...+
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 88999999999999999999999999999999999999999998776654
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.82 E-value=1.1e-19 Score=123.36 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=91.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|..+..+++. +.+++++|+|+++++.++++....+..+ +++++..|+.+++ ..
T Consensus 47 ~vLDiGcG~G~~a~~la~~-------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~----~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAEL-------------GHQVILCDLSAEMIQRAKQAAEAKGVSD----NMQFIHCAAQDIAQHL 109 (255)
T ss_pred EEEEeCCCchHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCCcc----ceEEEEcCHHHHhhhc
Confidence 6899999999999988875 5689999999999999999988776553 7899999987764 45
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++..++.++.++|||||++++..+.
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 678999999999999999999999999999999999876544
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=2.7e-20 Score=122.57 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=92.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||.|.++..+++. +.+|+++|.++.+++.|+......++ .+.+.+...+++...
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~-------------Ga~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~ 121 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARL-------------GASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASA 121 (243)
T ss_pred CeEEEecCCccHhhHHHHHC-------------CCeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhc
Confidence 47999999999999999986 78999999999999999988877653 466777777777655
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|+|.-++.|.+++..++..+.+++||||.+++....+.
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 68999999999999999999999999999999999999776644
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.81 E-value=5.5e-19 Score=120.37 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=89.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. ..+++++|+|+.++..++++..... ++.+...|+.+.+++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~------------~~~v~giD~s~~~~~~a~~~~~~~~-------~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY------------GAHVHGVDICEKMVNIAKLRNSDKN-------KIEFEANDILKKDFP 114 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc------------CCEEEEEECCHHHHHHHHHHcCcCC-------ceEEEECCcccCCCC
Confidence 369999999999988887642 4689999999999999998875422 799999999888888
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+++||+|++..++++++ ++..++.++.++|||||++++.++...
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 88999999988877775 788999999999999999999887543
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.81 E-value=8.7e-19 Score=114.83 Aligned_cols=100 Identities=17% Similarity=0.068 Sum_probs=85.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....++. ++++...|+...+++
T Consensus 33 ~vLDiGcG~G~~a~~La~~-------------g~~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~- 93 (197)
T PRK11207 33 KTLDLGCGNGRNSLYLAAN-------------GFDVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNLTFD- 93 (197)
T ss_pred cEEEECCCCCHHHHHHHHC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhCCcC-
Confidence 6999999999999988875 568999999999999999988776653 688888898776654
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..++|+++ ++..++.++.++|+|||++++.+
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5799999999988775 57899999999999999976544
No 16
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.80 E-value=1.7e-20 Score=110.27 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=65.7
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IES 81 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~ 81 (131)
||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...... +......+..+.. ...
T Consensus 1 LdiGcG~G~~~~~l~~~~~-----------~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-----------DARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC-
T ss_pred CEeCccChHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhcccc
Confidence 7999999999999999864 789999999999999998888775522 3333333332221 122
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
++||+|++..++|+++++...+.++.+.|+|||++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999999986
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.80 E-value=1.4e-18 Score=118.97 Aligned_cols=106 Identities=25% Similarity=0.260 Sum_probs=93.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++... ...+++++|+++.+++.++++....+.. ++++...|+..+++++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g----------~~~~v~gvD~s~~~l~~A~~~~~~~g~~-----~v~~~~~d~~~l~~~~ 144 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVG----------PTGKVIGVDMTPEMLAKARANARKAGYT-----NVEFRLGEIEALPVAD 144 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhC----------CCCEEEEECCCHHHHHHHHHHHHHcCCC-----CEEEEEcchhhCCCCC
Confidence 699999999998887777654 2468999999999999999988776553 7899999998888877
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++.++++.++....+.++.++|||||++++.++.
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 89999999999999999999999999999999999997754
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=5.2e-19 Score=119.76 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=86.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+.+. +.+++++|+|+.+++.++++.. ...++..|+..+++++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRER-------------GSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLAT 101 (251)
T ss_pred eEEEeeCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCC
Confidence 5899999999988877653 5689999999999999987642 3467888988888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++..+++.+++...+.++.++|+|||.+++..+...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 8999999999999999999999999999999999999876543
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.79 E-value=1.9e-18 Score=115.16 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=92.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+|++++..+++++...++.+ +++++..|....+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-----------~~~v~gid~s~~~~~~a~~~~~~~gl~~----~i~~~~~d~~~~~~~- 65 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-----------HLQLHGYTISPEQAEVGRERIRALGLQG----RIRIFYRDSAKDPFP- 65 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCc----ceEEEecccccCCCC-
Confidence 689999999999998888754 5689999999999999999988776664 789999998665543
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+++++++....+.++.+.|+|||++++.++.
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 57999999999999999999999999999999999998764
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.79 E-value=1.3e-18 Score=118.17 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++ ++.++..|+..++ +.
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p-----------~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWP-----------GAVIEALDSSPEMVAAARER------------GVDARTGDVRDWK-PK 87 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCC-CC
Confidence 699999999999998888754 56899999999999998642 5678888887764 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++.++|+++++...+.++.+.|||||++++..
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 689999999999999999999999999999999998864
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=117.07 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=89.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.... +..+++++|+|+.|++.++++....+... +++++..|+.+.+++
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~---------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~----~v~~~~~d~~~~~~~- 124 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKAPT----PVDVIEGDIRDIAIE- 124 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEeCChhhCCCC-
Confidence 6999999999998888774310 36799999999999999999988765443 799999998877653
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+|+|++++++|+++ +...++.++++.|+|||.+++.|....
T Consensus 125 -~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 125 -NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred -CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 589999999999886 356889999999999999999885543
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=4e-18 Score=114.74 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=90.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.+. ++..+++++|+|+.|+..+++++....... +++++..|+...+++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~---------~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~- 121 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNIN---------QPNVKIIGIDNSQPMVERCRQHIAAYHSEI----PVEILCNDIRHVEIK- 121 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcC---------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEECChhhCCCC-
Confidence 699999999999998888642 036789999999999999999987654332 789999999887654
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+|+|++.+++|+++ +...++.++.+.|+|||.+++.+....
T Consensus 122 -~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 122 -NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred -CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 589999999999886 467899999999999999999886543
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.78 E-value=3.9e-18 Score=119.19 Aligned_cols=103 Identities=26% Similarity=0.300 Sum_probs=90.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ ..+++++|.|+++++.++++... .+++++..|+.+.+++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-----------~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFP 175 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCC
Confidence 4699999999999988887654 46899999999999999887542 1688899999988888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|+++.+++++++....++++.+.|+|||++++.+..
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 889999999999999999999999999999999999887643
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.78 E-value=8.2e-19 Score=103.48 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=78.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
|||+|||+|..+..+++.... . +..+++++|+|+++++.++++....+. ++++++.|+.+++...+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~-------~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~ 66 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-G-------PSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDG 66 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSS
T ss_pred CEEeecCCcHHHHHHHHHhhh-c-------ccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCC
Confidence 799999999999999988521 0 237999999999999999999876442 78999999999877778
Q ss_pred CeeEEEEccc-ccccc--CHHHHHHHHHHhccCCc
Q psy890 83 SYSAYTIAFG-IRNVT--RIDKALSEAYRVLKPGG 114 (131)
Q Consensus 83 ~~D~i~~~~~-l~~~~--~~~~~l~~~~~~L~p~G 114 (131)
+||+|++.+. +++++ +...++.++.++|+|||
T Consensus 67 ~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 67 KFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999655 77776 56799999999999998
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.78 E-value=4.3e-18 Score=111.41 Aligned_cols=100 Identities=14% Similarity=0.026 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+. ++.+...|....+++
T Consensus 33 ~vLDiGcG~G~~a~~la~~-------------g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLA-------------GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAALN- 92 (195)
T ss_pred cEEEeCCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcccc-
Confidence 6899999999999988874 56899999999999999888765543 356666776655543
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++||+|++..++++++ +....+.++.++|+|||++++.++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 5799999999998874 567899999999999999776654
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.78 E-value=7.5e-18 Score=123.22 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=90.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.. +.+++++|+|+.++..++++..... .++++...|+...+++.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~------------~~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENF------------DVHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTKKTYPD 330 (475)
T ss_pred EEEEEeccCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcccCCCCC
Confidence 69999999999988887753 4589999999999999988765322 27899999998887777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++++.|+|||++++.++..
T Consensus 331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 899999999999999999999999999999999999987654
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.78 E-value=3.9e-18 Score=114.22 Aligned_cols=103 Identities=25% Similarity=0.368 Sum_probs=90.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.++..++++... ++.++..|+.+.+++.
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~-----------~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFP-----------QAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEKLPLED 96 (240)
T ss_pred eEEEECCCccHHHHHHHHhCC-----------CCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhhCCCCC
Confidence 699999999999998888754 56799999999999998877641 6788999998888777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..++++..++...+.++.+.|+|||.+++.++...
T Consensus 97 ~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 8999999999999999999999999999999999998775543
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.78 E-value=8.4e-18 Score=109.08 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=86.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++.+..+.. +++++..|..+.+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-----------~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~~~- 109 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-----------ELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEFGQ- 109 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-----------CCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhCCC-
Confidence 3699999999999998887643 679999999999999999999887754 69999999888765
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++.. +.++..++.++.+.|+|||++++....
T Consensus 110 ~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 67899999864 457788999999999999999987644
No 29
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.77 E-value=1.1e-17 Score=112.16 Aligned_cols=111 Identities=43% Similarity=0.631 Sum_probs=95.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++....... ++.++..|+.+.+..
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG----------KTGEVVGLDFSEGMLAVGREKLRDLGLSG----NVEFVQGDAEALPFP 118 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC----------CCCeEEEEeCCHHHHHHHHHhhccccccc----CeEEEecccccCCCC
Confidence 3689999999999999988753 24789999999999999999887644332 788999998887766
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++.+++++.++....+.++.+.|+|||++++.++..+.
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 678999999999999999999999999999999999998876554
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=6.7e-18 Score=114.73 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++.. ++.++..|+..+. +.
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~-----------~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWP-----------AARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ-PP 91 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC-CC
Confidence 699999999999998888754 5789999999999999987742 6788888887654 34
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|+++.+++++++...++.++.+.|+|||.+++.
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 68999999999999999999999999999999999875
No 31
>PRK05785 hypothetical protein; Provisional
Probab=99.77 E-value=4.2e-18 Score=113.68 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||..+..+++.. +.+++++|+|++|++.++++. .++.+|+..+|+++
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~------------~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d 108 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVF------------KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRD 108 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhc------------CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCC
Confidence 69999999999998887753 358999999999999987531 24577888889999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~ 128 (131)
++||+|++.+++++++++...+.++.|+|||. +.+++++.+....
T Consensus 109 ~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~ 153 (226)
T PRK05785 109 KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVI 153 (226)
T ss_pred CCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHH
Confidence 99999999999999999999999999999993 4456777766543
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=1.4e-17 Score=116.27 Aligned_cols=102 Identities=20% Similarity=0.084 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++... ...|+|+|+|+.++.+++......... .++.+...|+.+++. .
T Consensus 125 ~VLDIGCG~G~~~~~la~~g------------~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAG------------AKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQLPA-L 187 (322)
T ss_pred EEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHCCC-c
Confidence 69999999999999887762 346999999999987654433222111 278999999998887 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..+++|..++...+.++++.|+|||.+++..
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999999999999999999999999999998754
No 33
>KOG1270|consensus
Probab=99.75 E-value=2.7e-18 Score=114.12 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=86.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCC----ceeEEeccccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNP----RLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~ 76 (131)
|.|||+|||+|-++..+++. +..|+|+|.++.+++.|++......... . ++.+...+.+.
T Consensus 91 ~~ilDvGCGgGLLSepLArl-------------ga~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL-------------GAQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEG 154 (282)
T ss_pred ceEEEeccCccccchhhHhh-------------CCeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhh
Confidence 57999999999999999997 7899999999999999998843322211 1 24555666665
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.. +.||.|+|+-+++|..++..++..+.+.|||||.+++....+.
T Consensus 155 ~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 155 LT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 43 4599999999999999999999999999999999999876654
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.75 E-value=3.8e-17 Score=109.36 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=91.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++... +..+++++|+++.++..++++..... .++.+...|+...++.
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~----------~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG----------PEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADGLPFP 84 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC----------CCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEecccccCCCC
Confidence 3689999999999999988763 25789999999999999988733221 2788999998887777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++...+.++.+.|+|||.+++.+..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 789999999999999999999999999999999999987753
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.75 E-value=2.8e-17 Score=106.29 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++...+ ..+++++|.|+.+++.++++.+..+.. +++++..|+.+.. .
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-----------~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~~-~ 106 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-----------ELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDFQ-H 106 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-----------CCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhcc-c
Confidence 3689999999999998876533 578999999999999999888776653 7999999988763 3
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|++.. +.+....++.+.++|+|||++++..
T Consensus 107 ~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 EEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 56899999865 3456677888999999999998764
No 36
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.75 E-value=4.8e-17 Score=107.98 Aligned_cols=108 Identities=43% Similarity=0.630 Sum_probs=92.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.++..++++... . .++.+...|+.+.++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~----------~~~~~~~iD~~~~~~~~~~~~~~~---~----~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAP----------DRGKVTGVDFSSEMLEVAKKKSEL---P----LNIEFIQADAEALPFE 103 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcC----------CCceEEEEECCHHHHHHHHHHhcc---C----CCceEEecchhcCCCC
Confidence 3689999999999998888754 126899999999999999888751 1 2788999998887776
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++++++++.+++..+++++.+.|+|||++++.+...+.
T Consensus 104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 778999999999999999999999999999999999998876544
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=3.8e-17 Score=110.86 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=95.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||||||.|.+++.+++.. +.+|+|+++|+++...+++++...++++ ++++...|..++.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y------------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~----~v~v~l~d~rd~~-- 135 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY------------GVTVVGVTLSEEQLAYAEKRIAARGLED----NVEVRLQDYRDFE-- 135 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc------------CCEEEEeeCCHHHHHHHHHHHHHcCCCc----ccEEEeccccccc--
Confidence 689999999999999999985 4899999999999999999999998885 8999999988765
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCcc
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~ 127 (131)
+.||.|++..++.++. +...++..+.+.|+|||++++-..+.+..+
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 3399999999999986 489999999999999999998777766543
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=3.7e-17 Score=112.75 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....++ ++++...|+..... .
T Consensus 123 ~vLDlGcG~G~~~~~la~~-------------g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~-~ 182 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALL-------------GFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASI-Q 182 (287)
T ss_pred CEEEeCCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccc-c
Confidence 5899999999999988774 56899999999999999988876553 57777778766544 5
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..++++++ +....+.++.++|+|||+++++.
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7899999999998875 56789999999999999977654
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.74 E-value=1.2e-17 Score=105.65 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=77.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+.+. +.+++++|+++.++.. . +......+......+
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~-------------~~~~~g~D~~~~~~~~--------~-------~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKR-------------GFEVTGVDISPQMIEK--------R-------NVVFDNFDAQDPPFP 75 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHT-------------TSEEEEEESSHHHHHH--------T-------TSEEEEEECHTHHCH
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEECCHHHHhh--------h-------hhhhhhhhhhhhhcc
Confidence 46999999999998888554 4599999999999888 1 333333333333456
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..++++++++..++.++.++|||||++++.++..
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 6899999999999999999999999999999999999988765
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.74 E-value=3.4e-17 Score=107.71 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-- 78 (131)
.|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++....+.. ++.++..|+ ..++
T Consensus 43 ~VLDiGcGtG~~~~~la~~~p-----------~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~ 106 (202)
T PRK00121 43 IHLEIGFGKGEFLVEMAKANP-----------DINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDM 106 (202)
T ss_pred eEEEEccCCCHHHHHHHHHCC-----------CccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHH
Confidence 699999999999999988754 568999999999999999988766543 799999998 6655
Q ss_pred CCCCCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.++||+|++++...+.. ....++.++.++|+|||++++..
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5667899999976554332 14678999999999999998864
No 41
>PRK06922 hypothetical protein; Provisional
Probab=99.73 E-value=5e-17 Score=120.53 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=88.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++..+ ..+++++|+|+.|++.++++....+ .++.++.+|..+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P-----------~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE-----------DKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSS 482 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccc
Confidence 3689999999999888887654 6799999999999999998765433 16788888987776
Q ss_pred CCCCCeeEEEEccccccc-------------cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRNV-------------TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-------------~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+++++||+|+++..+|++ .+...++.++.++|||||++++.+...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 677899999999888864 246789999999999999999988543
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.73 E-value=6e-17 Score=112.40 Aligned_cols=103 Identities=16% Similarity=-0.041 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++.. ....++|+|+|+.|+.++...-...... .++.+...++.+++..
T Consensus 124 ~VLDvGCG~G~~~~~~~~~------------g~~~v~GiDpS~~ml~q~~~~~~~~~~~----~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 124 TILDVGCGSGYHMWRMLGH------------GAKSLVGIDPTVLFLCQFEAVRKLLDND----KRAILEPLGIEQLHEL- 186 (314)
T ss_pred EEEEeccCCcHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHHHHHhccC----CCeEEEECCHHHCCCC-
Confidence 6899999999998877665 1347999999999988754322211111 1678888888887643
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+||+|+++.+++|.+++...+.++++.|+|||.+++.+.
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4799999999999999999999999999999999987543
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.72 E-value=1.4e-16 Score=108.92 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=84.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||.|..+..+++.. +.+|+++.+|+++...+++++...++.+ ++++...|..+++.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~------------g~~v~gitlS~~Q~~~a~~~~~~~gl~~----~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERY------------GCHVTGITLSEEQAEYARERIREAGLED----RVEVRLQDYRDLPG- 126 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--------------EEEEEES-HHHHHHHHHHHHCSTSSS----TEEEEES-GGG----
T ss_pred CEEEEeCCCccHHHHHHHHHc------------CcEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEEeeccccCC-
Confidence 479999999999999999986 4789999999999999999999988875 89999999887653
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+||.|++..++.++ .+...++.++.++|+|||++++-..+
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 89999999999988 47889999999999999999875444
No 44
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.71 E-value=1.9e-16 Score=101.58 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++++..++. +++++..|..+. .+.
T Consensus 34 ~vLDlG~G~G~i~~~la~~~~-----------~~~v~~vDi~~~a~~~a~~n~~~n~~~-----~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 34 RVLDLGCGSGVISLALAKRGP-----------DAKVTAVDINPDALELAKRNAERNGLE-----NVEVVQSDLFEA-LPD 96 (170)
T ss_dssp EEEEETSTTSHHHHHHHHTST-----------CEEEEEEESBHHHHHHHHHHHHHTTCT-----TEEEEESSTTTT-CCT
T ss_pred eEEEecCChHHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHHhcCcc-----cccccccccccc-ccc
Confidence 689999999999999988754 567999999999999999999988765 488888887653 346
Q ss_pred CCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++-.++.-.+ ...++.+..++|+|||.++++-
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 88999999877765543 5788999999999999997754
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.71 E-value=3.8e-17 Score=106.00 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=86.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|.|+|||+|..+..+++.++ ...++|+|.|++|++.|+++.. +++|..+|+..+. +.
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP-----------~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWP-----------DAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWK-PE 90 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCC-----------CCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcC-CC
Confidence 589999999999999999986 7899999999999999987763 7889999998874 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.|+++++.+++|+++-...+.++...|.|||.+-+
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 6799999999999999999999999999999999865
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.70 E-value=3.9e-16 Score=101.11 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|||.|+.+..+++. +..|+++|.|+..++.+++..+..++ .++....|++...++
T Consensus 33 ~~LDlgcG~GRNalyLA~~-------------G~~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~~~~~- 92 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQ-------------GFDVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLNDFDFP- 92 (192)
T ss_dssp EEEEES-TTSHHHHHHHHT-------------T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-T-
T ss_pred cEEEcCCCCcHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchhcccc-
Confidence 5899999999999999996 78999999999999999887766554 588889999887765
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.||+|++..++++++ .....+..+.+.++|||++++..+.
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 6799999987777765 5678899999999999998886543
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.70 E-value=2.7e-16 Score=101.23 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||+|||.|.++..|+.. +.+++++|+|+..++.++++..... +++|...++.+. .+.
T Consensus 46 ~alEvGCs~G~lT~~LA~r-------------Cd~LlavDis~~Al~~Ar~Rl~~~~-------~V~~~~~dvp~~-~P~ 104 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPR-------------CDRLLAVDISPRALARARERLAGLP-------HVEWIQADVPEF-WPE 104 (201)
T ss_dssp EEEEE--TTSHHHHHHGGG-------------EEEEEEEES-HHHHHHHHHHTTT-S-------SEEEEES-TTT----S
T ss_pred eeEecCCCccHHHHHHHHh-------------hCceEEEeCCHHHHHHHHHhcCCCC-------CeEEEECcCCCC-CCC
Confidence 5799999999999999887 5689999999999999999998754 899999998764 467
Q ss_pred CCeeEEEEccccccccC---HHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.||+|+++-+++++.+ +..++..+...|+|||.+++....
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 89999999999999964 567899999999999999997654
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=3.9e-16 Score=102.91 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.++ ...+++++|+++++++.+++++...+... +++++..|..+.....
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~----------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~----~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIE----------RRGKVYTVEIVKELAIYAAQNIERLGYWG----VVEVYHGDGKRGLEKH 140 (205)
T ss_pred EEEEECcCccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEECCcccCCccC
Confidence 699999999999988888764 24689999999999999999988766543 6899999987654345
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|++...+.+++ .++.+.|+|||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 6899999988776554 4678899999999774
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.70 E-value=1.2e-16 Score=108.91 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=82.1
Q ss_pred ceeeeecccchhhH----HHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh----ccCC-------------
Q psy890 2 YILFYLVFPGDIAF----RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD----LFKV------------- 60 (131)
Q Consensus 2 ~iLdig~G~G~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~----~~~~------------- 60 (131)
+|+|+|||+|..+. .+++..+... ....+++++|+|+.+++.|++..-. ...+
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~------~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAR------EPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcC------CCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 69999999997543 3444332100 0246899999999999999886421 0000
Q ss_pred -----CCCCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 61 -----PVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 61 -----~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.-..++.|...|+.+.+.+.++||+|+|.+++++++ +..+++.++.+.|+|||++++.
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0001268899999988776678899999999999996 4568999999999999999874
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=3e-16 Score=114.85 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=85.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 79 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++..... +++.++..|+.. .++
T Consensus 40 ~vLDlGcG~G~~~~~la~~-------------~~~v~giD~s~~~l~~a~~~~~~~-------~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKK-------------AGQVIALDFIESVIKKNESINGHY-------KNVKFMCADVTSPDLNI 99 (475)
T ss_pred EEEEeCCCcCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEecccccccCC
Confidence 6899999999999998876 458999999999998876533221 178899999863 456
Q ss_pred CCCCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 ESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+.++||+|++.++++++++ ...++.++.+.|+|||++++.|.....
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 7789999999999999876 578999999999999999998765443
No 51
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.70 E-value=4.7e-16 Score=108.13 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=88.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|||+|.++..+++..+ ..+++++|. +.+++.++++....+..+ +++++..|+.+.+++
T Consensus 152 ~vlDiG~G~G~~~~~~~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~gl~~----rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 152 KMIDVGGGIGDISAAMLKHFP-----------ELDSTILNL-PGAIDLVNENAAEKGVAD----RMRGIAVDIYKESYP- 214 (306)
T ss_pred EEEEeCCchhHHHHHHHHHCC-----------CCEEEEEec-HHHHHHHHHHHHhCCccc----eEEEEecCccCCCCC-
Confidence 689999999999999999865 678999997 789999999988877664 899999998765544
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+|+|++.+++|++++. ..+++++++.|+|||++++.|+..
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 36999999999988643 578999999999999999998743
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.69 E-value=4.5e-16 Score=102.47 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=81.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+.+..+ ..+++++|+|+++++.++++.+ ++.+..+|+.+ +++.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~-----------~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~ 103 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLP-----------FKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKD 103 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCC
Confidence 699999999999999887654 5789999999999999987642 56677788777 7778
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..++++++ +..+.+.++.+.+ ++++++.++..+
T Consensus 104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 104 NFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 8999999999998885 4578888888887 568888776543
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.69 E-value=3.4e-16 Score=102.38 Aligned_cols=103 Identities=19% Similarity=0.108 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||+|||+|.++..+++..+ ...++++|+++.++..++++....+.. +++++..|+.+.+
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p-----------~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNP-----------DKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKF 82 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCC-----------CCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhh
Confidence 589999999999999988754 678999999999999999988776654 8999999987643
Q ss_pred CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.+++|.|++++...|.... ..++.++.+.|||||.+++..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 445689999998765554322 578999999999999998754
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.69 E-value=1e-15 Score=92.96 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=80.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~ 79 (131)
.++||+|||+|..+..+++..+ ..+++++|+++.+++.++++....+.. ++.++..|... .+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVP-----------NGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALED 84 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccChh
Confidence 3689999999999999988764 578999999999999999988776543 67888787654 222
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..++||.|++..... ...+++..+.+.|+|||++++.
T Consensus 85 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 346899999976543 4468899999999999999874
No 55
>PLN03075 nicotianamine synthase; Provisional
Probab=99.68 E-value=8.3e-16 Score=105.35 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHH-hhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRF-LNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|+|||||.|-++..+ ++... +..+++++|.++++++.|++.+.. .++.+ +++|...|+.+...
T Consensus 126 ~VldIGcGpgpltaiilaa~~~----------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~----rV~F~~~Da~~~~~ 191 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHHL----------PTTSFHNFDIDPSANDVARRLVSSDPDLSK----RMFFHTADVMDVTE 191 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHhhhccCccC----CcEEEECchhhccc
Confidence 5899999988654444 33322 367999999999999999999854 55553 89999999887543
Q ss_pred CCCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+.||+|++. +++++ ++..+.+.++.+.|+|||++++-.
T Consensus 192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 34689999999 77777 688999999999999999998753
No 56
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.68 E-value=3.3e-16 Score=107.28 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=78.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+.. ....++++|+|+.++..+.++. . ++.+..+|..++|+++
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~--------~~~~v~giD~s~~~l~~A~~~~---~-------~~~~~~~d~~~lp~~~ 149 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEI--------TTMQLFGLDISKVAIKYAAKRY---P-------QVTFCVASSHRLPFAD 149 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccc--------cCCeEEEECCCHHHHHHHHHhC---C-------CCeEEEeecccCCCcC
Confidence 58999999999999988765410 1247999999999999997653 1 6888999999888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++.+.- ..+.++.++|||||+++++..+.
T Consensus 150 ~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 150 QSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred CceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 899999986541 23578999999999999876544
No 57
>PRK06202 hypothetical protein; Provisional
Probab=99.68 E-value=6.7e-16 Score=103.50 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=81.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++...... ...+++++|+|++|++.++++.... ++++...+...++..+
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDG-------LRLEVTAIDPDPRAVAFARANPRRP--------GVTFRQAVSDELVAEG 127 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCC-------CCcEEEEEcCCHHHHHHHHhccccC--------CCeEEEEecccccccC
Confidence 699999999999988877543110 2458999999999999998875432 4556666655555566
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++++++|++++. ..++.++.+.++ |.+++.++.++
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 789999999999999874 578999999988 66667776655
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=100.92 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=80.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++... ...+++++|+++++++.+++++...+.. +++++..|.......
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~----------~~~~V~~vE~~~~~~~~a~~~l~~~g~~-----~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG----------KSGKVVTIERIPELAEKAKKTLKKLGYD-----NVEVIVGDGTLGYEE 142 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEECCcccCCCc
Confidence 3699999999999988888754 3468999999999999999999877653 799999998765445
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||+|++.......+ ..+.+.|+|||++++..
T Consensus 143 ~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 57899999977654432 45677899999987753
No 59
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.65 E-value=3.1e-15 Score=99.67 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=87.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++. ..+++++|.++.++..+++++...... ++.+...|+.+.+..
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~ 108 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-------------GANVTGIDASEENIEVAKLHAKKDPLL-----KIEYRCTSVEDLAEK 108 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEeCCHHHhhcC
Confidence 36899999999998877664 346999999999999999888765422 578888887776543
Q ss_pred -CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 -SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...+++..++...+.++.+.|+|||++++....
T Consensus 109 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 109 GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 368999999999999999999999999999999999887643
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=5.4e-15 Score=98.12 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=78.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ...+++++|+++++++.+++++...+.. +++++..|........
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~----------~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVG----------RDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWEPL 144 (215)
T ss_pred EEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCccc
Confidence 689999999999998888754 2467999999999999999999887754 7999999987654344
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|++.....+.+ ..+.+.|+|||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 6899999876654433 4577889999998875
No 61
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.64 E-value=3.9e-15 Score=105.41 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=87.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
.+||||||+|..+..+++..+ ...++|+|+++.++..+.++....+.. ++.++.+|+..+ .+
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P-----------~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll~~~ 188 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNP-----------NKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLLELL 188 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCC-----------CCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhhhhC
Confidence 589999999999999999864 678999999999999999998877665 899999998764 36
Q ss_pred CCCCeeEEEEccccccccCH------HHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRI------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+++++|.|++++...|...+ ..++.++.++|+|||.+.+..
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 77899999998776665443 578999999999999998853
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=8.2e-15 Score=94.69 Aligned_cols=102 Identities=19% Similarity=0.111 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+. +++++..|..+.. .
T Consensus 22 ~vLdlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGK-------------GKCILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV--R 80 (179)
T ss_pred eEEEeCCChhHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--C
Confidence 5899999999999888775 33899999999999999999876542 5788888876543 3
Q ss_pred CCeeEEEEccccccccC---------------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR---------------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++..++..++ ...++.++.++|+|||.+++++....
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 58999999876654432 35679999999999999998876554
No 63
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=1.6e-15 Score=96.37 Aligned_cols=87 Identities=31% Similarity=0.500 Sum_probs=74.1
Q ss_pred EEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 38 ~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+|+|+|++|++.|+++.+...... ..+++++.+|+.++++++++||+|++.+++++++++...+.+++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~--~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC--YKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC--CCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 489999999999987765322100 026899999999999888899999999999999999999999999999999999
Q ss_pred EEeccCCCc
Q psy890 118 CLEFSHVNN 126 (131)
Q Consensus 118 ~~~~~~~~~ 126 (131)
+.|++.+..
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 999987654
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.63 E-value=5e-15 Score=104.16 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++++..+. ..+++..|.... ..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p-----------~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSP-----------KIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD--IK 259 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc--cC
Confidence 589999999999999988754 57899999999999999999887653 345666665442 24
Q ss_pred CCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++..+|+. .....++.++.++|+|||.++++.
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 689999999888763 245788999999999999998865
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.63 E-value=6.9e-15 Score=98.61 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.|||+|||+|..+..+++. ..+++++|+++.++..+++++..... ++.+...+..+.+ ..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 51 RVLDVGCGGGILSESMARL-------------GADVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAEH 111 (233)
T ss_pred eEEEeCCCCCHHHHHHHHc-------------CCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhhc
Confidence 6899999999998877664 45799999999999999988765432 4677777776654 33
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++.++....+..+.+.|+|||++++..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 478999999999999999999999999999999999887654
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=8.4e-15 Score=103.90 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|.|+.+++.++++++...... ..++++...|.... ...
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P-----------~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~~-~~~ 296 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNP-----------QAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSG-VEP 296 (378)
T ss_pred eEEEEeccccHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEcccccc-CCC
Confidence 599999999999999988754 6799999999999999999987654220 01578887776432 334
Q ss_pred CCeeEEEEcccccccc-----CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++..+|... ...+.+.++.++|+|||.++++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5899999987766442 24578899999999999998873
No 67
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.63 E-value=5.4e-15 Score=105.47 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=83.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++.. +.+++++|+|+++++.++++... . .+++...|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~------------g~~V~giDlS~~~l~~A~~~~~~-l-------~v~~~~~D~~~l--- 225 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHY------------GVSVVGVTISAEQQKLAQERCAG-L-------PVEIRLQDYRDL--- 225 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHhcc-C-------eEEEEECchhhc---
Confidence 369999999999998888763 46899999999999999988742 1 577777777654
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||.|++..+++++. ++..++.++.++|||||++++..++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 36799999998888874 467899999999999999998776543
No 68
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=4.4e-15 Score=89.48 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++.. ..+++++|+++..++.++++++.....+ +++++..|..+.. +
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~----~~~~~~~D~~~~~~~~ 66 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG------------AARVTGVDIDPEAVELARRNLPRNGLDD----RVEVIVGDARDLPEPL 66 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC------------TCEEEEEESSHHHHHHHHHHCHHCTTTT----TEEEEESHHHHHHHTC
T ss_pred EEEEcCcchHHHHHHHHHHC------------CCeEEEEEECHHHHHHHHHHHHHccCCc----eEEEEECchhhchhhc
Confidence 69999999999999998872 3789999999999999999999887654 8999999988764 6
Q ss_pred CCCCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|+++-...... ....++.++.++|+|||.++++-
T Consensus 67 ~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 678999999976654321 23678999999999999998753
No 69
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=7.3e-15 Score=97.24 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-C------CCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-K------VPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~d~ 74 (131)
+|||+|||.|+.+..+++. +..|+++|+|+.+++.+.+...... . .-.+..+++++++|+
T Consensus 37 rvLd~GCG~G~da~~LA~~-------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQ-------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred eEEEeCCCchhHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 6999999999999999875 7789999999999998643221100 0 000012689999999
Q ss_pred ccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 75 EELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 75 ~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+++.. ...||.|+-..++++++ .+...+..+.++|+|||++++..+..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 887532 35799999988888875 45778999999999999877765544
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=95.56 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.+||+|||+|.++..+++... ...+++++|.++.+++.++++.+..+..+ ++.++..|..+. +..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~----------~~~~v~avD~~~~~~~~a~~n~~~~g~~~----~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVG----------ETGKVYAVDKDEKAINLTRRNAEKFGVLN----NIVLIKGEAPEILFTI 108 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhCCCC----CeEEEEechhhhHhhc
Confidence 689999999999999887754 35689999999999999999988766433 788888887653 222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.||+|++.. ...++...+..+.+.|+|||++++
T Consensus 109 ~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 109 NEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence 36799999864 245678889999999999999976
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.62 E-value=1.4e-14 Score=94.27 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=79.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++....+.. +++++..|... ++ .
T Consensus 34 ~vLDiG~G~G~~~~~la~~~~-----------~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~~-~~-~ 95 (187)
T PRK08287 34 HLIDVGAGTGSVSIEAALQFP-----------SLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAPI-EL-P 95 (187)
T ss_pred EEEEECCcCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCchh-hc-C
Confidence 689999999999999988753 578999999999999999988766543 68888887642 22 3
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..... .....+..+.+.|+|||++++..
T Consensus 96 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEE
Confidence 5799999876543 45678889999999999998754
No 72
>KOG2361|consensus
Probab=99.61 E-value=2.3e-15 Score=99.16 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=91.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||.|.....+++..++ +...++++|.|+.+++..+++..... .++.....|+...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n---------~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN---------NRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCC---------CCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccC
Confidence 5899999999999999888652 35899999999999999987765432 1454444554432
Q ss_pred CCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCccccCC
Q psy890 78 PIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~~~ 131 (131)
+...+++|+|++.+++..++ .....+..+.++|||||.+++.|++.-....+|+
T Consensus 139 ~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 35568899999999998875 6789999999999999999999998876655553
No 73
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.61 E-value=7.3e-15 Score=98.21 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=87.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++... ..+++++|+++++.+.|+++++.+.+.+ +++++..|++++. .
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~-----------~a~I~~VEiq~~~a~~A~~nv~ln~l~~----ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTE-----------KAKIVGVEIQEEAAEMAQRNVALNPLEE----RIQVIEADIKEFLKAL 111 (248)
T ss_pred eEEEecCCcCHHHHHHhccCC-----------CCcEEEEEeCHHHHHHHHHHHHhCcchh----ceeEehhhHHHhhhcc
Confidence 689999999999999998864 5899999999999999999999988886 9999999999874 4
Q ss_pred CCCCeeEEEEcccccccc------------------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT------------------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+||+|+|+-...... +.+..+..+.++|||||.+.++-
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 445799999964432111 35888999999999999998863
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.60 E-value=1.5e-14 Score=96.18 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+++++|+|++++..++++.......+ ++.+...|+...+
T Consensus 58 ~vLDiGcG~G~~~~~la~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~~~--- 117 (219)
T TIGR02021 58 RVLDAGCGTGLLSIELAKR-------------GAIVKAVDISEQMVQMARNRAQGRDVAG----NVEFEVNDLLSLC--- 117 (219)
T ss_pred EEEEEeCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEECChhhCC---
Confidence 6899999999999988764 4589999999999999999987655432 7899999987764
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|++..++++++ +....+.++.+.+++++++.+
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6899999999887775 467889999999887766654
No 75
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.59 E-value=1.7e-14 Score=98.41 Aligned_cols=100 Identities=20% Similarity=0.104 Sum_probs=80.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||.|+.+..++.. +...|+|+|++.-.+.+..-.-.-.+.. ..+......+++++. .
T Consensus 118 ~VLDIGC~nGY~~frM~~~------------GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 118 RVLDIGCNNGYYSFRMLGR------------GAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDLPN-L 180 (315)
T ss_pred EEEEecCCCcHHHHHHhhc------------CCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhccc-c
Confidence 6999999999999988876 3467999999998877754322222211 145555567888776 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.||+|++..+++|..++...|.+++..|+|||.+++
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence 7899999999999999999999999999999999986
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=1.6e-14 Score=99.74 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=77.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+..+ ++.....+... ..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~-g-----------~~~V~avDid~~al~~a~~n~~~n~~~~----~~~~~~~~~~~--~~ 222 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKL-G-----------AAKVVGIDIDPLAVESARKNAELNQVSD----RLQVKLIYLEQ--PI 222 (288)
T ss_pred CEEEEeCCChhHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHcCCCc----ceEEEeccccc--cc
Confidence 37999999999998877653 2 4589999999999999999988776553 56666555322 23
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|+++.... .....+.++.+.|+|||++++....
T Consensus 223 ~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 223 EGKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 46899999976533 3457889999999999999987654
No 77
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.58 E-value=6.9e-14 Score=81.47 Aligned_cols=101 Identities=27% Similarity=0.369 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+++|+|||+|..+..+++. ...+++++|.++..+..+++....... .+++++..|..+... .
T Consensus 1 ~ildig~G~G~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASG------------PGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPPEA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcccc
Confidence 5899999999998888772 267999999999999988854333222 268888888877653 4
Q ss_pred CCCeeEEEEcccccc-ccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++...+++ .......+..+.+.++|+|++++.
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 578999999999988 778889999999999999999874
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.58 E-value=4e-14 Score=94.43 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
.+|||+|||+|.++..+++..+ ..+|+++|+++.|++.+.++..... ++.++..|....
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-----------~g~V~avD~~~~ml~~l~~~a~~~~-------nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-----------EGVVYAVEFAPRPMRELLEVAEERK-------NIIPILADARKPERY 135 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-----------CCeEEEEECCHHHHHHHHHHhhhcC-------CcEEEECCCCCcchh
Confidence 3699999999999999988753 4589999999999998877765432 788888887642
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++. ++||+|++.... ......++.++.++|||||.+++
T Consensus 136 ~~l~-~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 136 AHVV-EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hhcc-ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEE
Confidence 122 469999854221 01223458999999999999998
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.57 E-value=4.3e-14 Score=98.11 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=78.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.|||+|||+|..+..+++.+. ...+++++|+|++|++.+.+++...... -++.++.+|+.+. +..
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~----------~~~~~~~iDiS~~mL~~a~~~l~~~~p~----~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALR----------QPARYVPIDISADALKESAAALAADYPQ----LEVHGICADFTQPLALP 131 (301)
T ss_pred eEEecCCCcchhHHHHHHhhc----------cCCeEEEEECCHHHHHHHHHHHHhhCCC----ceEEEEEEcccchhhhh
Confidence 589999999999999998864 2478999999999999999887653211 1577788998763 333
Q ss_pred CC----CeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SD----SYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~----~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. ...++++...+++++ +...++.++++.|+|||.+++.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22 233444455677765 4668899999999999999873
No 80
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=8.3e-14 Score=95.95 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=80.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....++.+ +++++..|+.+. ++.
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~-----------~~~v~avDis~~al~~A~~n~~~~~~~~----~i~~~~~D~~~~-~~~ 187 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFP-----------EAEVDAVDISPDALAVAEINIERHGLED----RVTLIQSDLFAA-LPG 187 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECchhhc-cCC
Confidence 589999999999999988754 5789999999999999999998877653 799999997542 344
Q ss_pred CCeeEEEEcccc-------------cccc------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGI-------------RNVT------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l-------------~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+||+|+++-.. ++-+ ....++.++.++|+|||++++ |.+
T Consensus 188 ~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g 252 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG 252 (284)
T ss_pred CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 579999986211 1111 125678889999999999865 554
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.56 E-value=3.9e-14 Score=93.62 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++... ...+++++|+++ + ... +++.++.+|+...+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~----------~~~~V~aVDi~~-~----------~~~-----~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIG----------DKGRVIACDILP-M----------DPI-----VGVDFLQGDFRDELVLK 107 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcC----------CCceEEEEeccc-c----------cCC-----CCcEEEecCCCChHHHH
Confidence 689999999999999988764 356899999988 1 111 16889999988743
Q ss_pred -----CCCCCeeEEEEccccccccC-----------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----IESDSYSAYTIAFGIRNVTR-----------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+..++||+|++....++..+ ...++..+.++|+|||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 45678999999776554432 1467899999999999999876654
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.56 E-value=8.2e-14 Score=94.17 Aligned_cols=101 Identities=24% Similarity=0.247 Sum_probs=80.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+.. ++.++..|+.+ +++.
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~-----------~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERP-----------DARVTAVDISPEALAVARKNAARLGLD-----NVTFLQSDWFE-PLPG 152 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhc-cCcC
Confidence 689999999999999988754 568999999999999999998876653 68999999766 3456
Q ss_pred CCeeEEEEcccccccc--------------------------CHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVT--------------------------RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|+++....... ....++.++.+.|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7899999964332111 1246788999999999998774
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.56 E-value=9.6e-14 Score=91.93 Aligned_cols=97 Identities=10% Similarity=-0.026 Sum_probs=75.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++. ..+++++|++++++..+++++...+.. ++.+...|..+....
T Consensus 80 ~~VLeiG~GsG~~t~~la~~-------------~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHL-------------VRRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGWPA 141 (212)
T ss_pred CEEEEECCCccHHHHHHHHH-------------hCEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCCCc
Confidence 46999999999998866664 247999999999999999999876654 688888887553223
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++...++++ ...+.+.|+|||++++.-.
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 4689999998765544 3457889999999887543
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=5.8e-14 Score=97.59 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.++..++++....+..+ +++++..|+.+. .+.
T Consensus 136 ~VLDlG~GsG~iai~la~~~p-----------~~~V~avDis~~al~~A~~n~~~~~l~~----~i~~~~~D~~~~-l~~ 199 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFP-----------DAEVDAVDISPDALAVAEINIERHGLED----RVTLIESDLFAA-LPG 199 (307)
T ss_pred EEEEEechhhHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCCC----cEEEEECchhhh-CCC
Confidence 589999999999999988754 6789999999999999999998776553 799999997542 334
Q ss_pred CCeeEEEEcccc-------------cccc------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGI-------------RNVT------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l-------------~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++-.. ++.+ ....++.++.++|+|||++++ |.+.
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN 265 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 579999986211 1111 125778999999999999976 5443
No 85
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.55 E-value=4.1e-14 Score=93.27 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=76.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||||||+|+.+..++...+ ...+|+++|..+...+.+++++...+.. ++.++.+|.......
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg----------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-----nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG----------PVGRVVSVERDPELAERARRNLARLGID-----NVEVVVGDGSEGWPE 138 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS----------TTEEEEEEESBHHHHHHHHHHHHHHTTH-----SEEEEES-GGGTTGG
T ss_pred CEEEEecCCCcHHHHHHHHhcC----------ccceEEEECccHHHHHHHHHHHHHhccC-----ceeEEEcchhhcccc
Confidence 5799999999999999988875 3568999999999999999999987654 799999997654334
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||.|++.......+ ..+.+.|++||++++.-
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 56899999988776444 33677799999998743
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=1.1e-13 Score=91.90 Aligned_cols=106 Identities=8% Similarity=-0.055 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-------CCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-------VPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~ 74 (131)
+|||+|||.|..+..+++. +.+|+++|+|+.+++.+.+....... ....+.++++...|+
T Consensus 40 rvL~~gCG~G~da~~LA~~-------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQ-------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred eEEEeCCCChHhHHHHHhC-------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 6899999999999999875 67899999999999986432111000 000123788999998
Q ss_pred ccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+++.. ...||.|+-..++++++ .+...+..+.++|+|||+++++.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 887532 35799999988888886 56789999999999999755533
No 87
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-13 Score=89.67 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=81.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||+|+.+.-+++. ..+|+.+|..++..+.|+++++..+.. ++.++.+|-..---+
T Consensus 74 ~~VLEIGtGsGY~aAvla~l-------------~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~~ 135 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARL-------------VGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWPE 135 (209)
T ss_pred CeEEEECCCchHHHHHHHHH-------------hCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCCC
Confidence 47999999999999988887 348999999999999999999998876 799999997664334
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+||.|+........| ..+.+.|++||++++..-
T Consensus 136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 57899999988777666 336778999999988654
No 88
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.54 E-value=1.3e-13 Score=95.08 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.++..++++....+... ++.++..|+.+ +++.
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~-----------~~~v~avDis~~al~~a~~n~~~~~~~~----~v~~~~~d~~~-~~~~ 180 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFP-----------NAEVIAVDISPDALAVAEENAEKNQLEH----RVEFIQSNLFE-PLAG 180 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECchhc-cCcC
Confidence 589999999999999988754 5789999999999999999988776542 69999999765 2334
Q ss_pred CCeeEEEEccc-------------ccccc------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFG-------------IRNVT------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~-------------l~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||+|+++-. ..+.+ ....++.++.++|+|||++++ |++.
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~ 246 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN 246 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc
Confidence 47999998621 11111 245788899999999999865 5543
No 89
>PRK14967 putative methyltransferase; Provisional
Probab=99.54 E-value=1.7e-13 Score=91.40 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=77.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. + ..+++++|+++.++..++++....+. ++.++..|+.+. ++.
T Consensus 39 ~vLDlGcG~G~~~~~la~~-~-----------~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~-~~~ 99 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAA-G-----------AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARA-VEF 99 (223)
T ss_pred eEEEecCCHHHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhh-ccC
Confidence 6899999999998887764 1 35899999999999999998876542 577888887653 445
Q ss_pred CCeeEEEEcccccccc---------------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT---------------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++....... ....++.++.++|+|||+++++...
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 7899999974322110 1356788899999999999886433
No 90
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.53 E-value=2.6e-13 Score=88.90 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=77.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++++..+.. +++++..|+.+. +..
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~-----------~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCP-----------KGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQL 106 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhhC
Confidence 689999999999998876543 578999999999999999998876543 788888887542 211
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
...+|.++... ..+....+.++.+.|+|||++++....
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 23356665432 235678899999999999999887544
No 91
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.53 E-value=1.5e-13 Score=91.88 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+++++|+|+.++..++++....+..+ ++.+...|+.. ..
T Consensus 66 ~vLDvGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~---~~ 125 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARR-------------GAKVVASDISPQMVEEARERAPEAGLAG----NITFEVGDLES---LL 125 (230)
T ss_pred EEEEEeCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCCcc----CcEEEEcCchh---cc
Confidence 6899999999999888764 4569999999999999999887665432 78888888433 34
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++..++++++ +....+..+.+.+++++++.
T Consensus 126 ~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 6799999999997765 45677888887765544443
No 92
>KOG1271|consensus
Probab=99.53 E-value=6.4e-14 Score=88.98 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=87.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||.|.+...+++.-- ...++|+|+|+.+++.|+...+..++++ .++|.++|+....+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf-----------~~~L~GvDYs~~AV~LA~niAe~~~~~n----~I~f~q~DI~~~~~~~ 134 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGF-----------QSKLTGVDYSEKAVELAQNIAERDGFSN----EIRFQQLDITDPDFLS 134 (227)
T ss_pred ceeeccCCchHHHHHHHHhcC-----------CCCccccccCHHHHHHHHHHHHhcCCCc----ceeEEEeeccCCcccc
Confidence 689999999999998888632 3459999999999999999888888774 6999999998877777
Q ss_pred CCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+.||+|.--..+..+. .+...+..+.++|+|||++++..+.-.
T Consensus 135 ~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 135 GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 8899998765554332 235668888999999999999876643
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=99.53 E-value=1.9e-13 Score=88.59 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=79.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|.|+++++.+++++...+... ..+.++..|..+. +..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~-~~~ 88 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKN-------------GKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEVIRSDLFEP-FRG 88 (188)
T ss_pred EEEEEccccCHHHHHHHhh-------------cceEEEEECCHHHHHHHHHHHHHcCCCC---cceEEEecccccc-ccc
Confidence 5899999999999988875 4689999999999999999887765532 1278888886553 344
Q ss_pred CCeeEEEEccccccc---------------------cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNV---------------------TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~---------------------~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+||+|+++...... .....++.++.++|+|||.+++...+
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 589999986543221 12456799999999999998876543
No 94
>KOG3010|consensus
Probab=99.53 E-value=2.5e-14 Score=94.34 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=74.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|+|||+|..++.++.+. .+|+++|+|+.|++.+++..+..-... ..+....+..++--.+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-------------k~VIatD~s~~mL~~a~k~~~~~y~~t----~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-------------KEVIATDVSEAMLKVAKKHPPVTYCHT----PSTMSSDEMVDLLGGE 98 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-------------hhheeecCCHHHHHHhhcCCCcccccC----CccccccccccccCCC
Confidence 47899999998888888873 579999999999999988765432211 1222222233332236
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCc-EEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G-~l~~~~~~ 122 (131)
++.|+|++..++||+ ++++++++++|+||++| .+.+.-+.
T Consensus 99 ~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 899999999999988 67788999999998776 66554433
No 95
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.53 E-value=9.2e-14 Score=93.66 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=81.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|||+|+|.++..+++..+ ..+++.+|. ++.++.+++ . ++++++.+|+. .+++.
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P-----------~l~~~v~Dl-p~v~~~~~~-------~----~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYP-----------NLRATVFDL-PEVIEQAKE-------A----DRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHST-----------TSEEEEEE--HHHHCCHHH-------T----TTEEEEES-TT-TCCSS
T ss_pred EEEeccCcchHHHHHHHHHCC-----------CCcceeecc-Hhhhhcccc-------c----cccccccccHH-hhhcc
Confidence 589999999999999999875 789999998 778888777 2 29999999988 45655
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCC--cEEEEEeccCCCc
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG--GRFLCLEFSHVNN 126 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~--G~l~~~~~~~~~~ 126 (131)
+|+|++.+++|++++ -..+|+++++.|+|| |++++.|...+..
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 999999999999985 458899999999999 9999999875543
No 96
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=1.7e-13 Score=92.91 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=70.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+.+. + ..+++++|+|+.+++.++++....+..+ ++.+...+
T Consensus 122 ~VLDiGcGsG~l~i~~~~~-g-----------~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~-------- 177 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKL-G-----------AKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGD-------- 177 (250)
T ss_pred EEEEeCCcHHHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCC--------
Confidence 6899999999988766553 2 3469999999999999999988765432 33332222
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||+|+++... ......+.++.+.|+|||++++.....
T Consensus 178 ~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 178 LKADVIVANILA---NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 269999986532 234577899999999999999876543
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.7e-13 Score=91.93 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||.|.++..+++..+ ..+++.+|.|..+++.+++++..+..+ +..+...|... +..+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-----------~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~~-~v~~ 223 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-----------QAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLYE-PVEG 223 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-----------CCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEecccc-cccc
Confidence 589999999999999999865 789999999999999999999987765 33455555443 2233
Q ss_pred CCeeEEEEccccccccCH-----HHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRI-----DKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+||+|+++-.+|.-.+. .+.+.+..++|++||.|+++--
T Consensus 224 -kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 224 -KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 89999999998865532 4789999999999999998754
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.50 E-value=5e-13 Score=93.88 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.+...++.. +.+++++|+++.++..++++++..+.. ++.+...|+.+++...
T Consensus 185 ~vLDp~cGtG~~lieaa~~-------------~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLM-------------GAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLPLSS 246 (329)
T ss_pred EEEECCCCCCHHHHHHHHh-------------CCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCCccc
Confidence 6899999999987765543 568999999999999999999887754 5788899999888777
Q ss_pred CCeeEEEEccccc--c------c-cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIR--N------V-TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~--~------~-~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++.... . . .-...++.++.+.|+|||++++.-.+.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 8999999963321 1 1 114788999999999999988765443
No 99
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5e-13 Score=89.06 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=88.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|+|.|.|||.++..+++.+. +..+++.+|+-++.++.|++|++..++.+ ++.+...|+.+.-..
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg----------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d----~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVG----------PEGHVTTYEIREDFAKTARENLSEFGLGD----RVTLKLGDVREGIDE 161 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhC----------CCceEEEEEecHHHHHHHHHHHHHhcccc----ceEEEeccccccccc
Confidence 5799999999999999999876 57899999999999999999999988875 688888998876544
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .||.|+. .++++...+.++.+.|+|||.+.+..
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 3 8999977 68899999999999999999988753
No 100
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=2.6e-13 Score=94.67 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=77.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ....++++|.++++++.+++++...+.. ++.++..|.......
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~----------~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGVPE 146 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcccc
Confidence 3689999999999999988754 2357999999999999999998876653 788898887665444
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++..++.+.+ ..+.+.|+|||++++.
T Consensus 147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence 46799999987655443 3467889999998774
No 101
>PTZ00146 fibrillarin; Provisional
Probab=99.48 E-value=1.1e-12 Score=89.89 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=74.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|||+|||+|.++..+++.+. +..+|+++|+++.+.+...+...... ++.++..|+...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG----------~~G~VyAVD~s~r~~~dLl~~ak~r~-------NI~~I~~Da~~p~~y 196 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVG----------PEGVVYAVEFSHRSGRDLTNMAKKRP-------NIVPIIEDARYPQKY 196 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhcC-------CCEEEECCccChhhh
Confidence 4799999999999999999875 35689999999887665555544332 788888887542
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+++|+|++... ...+...++.++.++|||+|.+++.
T Consensus 197 ~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 197 RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 122357999998764 2233445667899999999999883
No 102
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.48 E-value=3.8e-13 Score=88.05 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=76.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+.||+|+|-|+.+..++... ..+|..+|+.+.+++.|++.+..... ....+++..++++....
T Consensus 58 ~alDcGAGIGRVTk~lLl~~------------f~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f~P~~ 120 (218)
T PF05891_consen 58 RALDCGAGIGRVTKGLLLPV------------FDEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDFTPEE 120 (218)
T ss_dssp EEEEET-TTTHHHHHTCCCC-------------SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG----T
T ss_pred eEEecccccchhHHHHHHHh------------cCEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhccCCC
Confidence 57999999999998776553 56899999999999999987765221 14678888988886555
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|++.|++.+++ +...+|++++..|+|+|++++-|
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 7899999999999997 56799999999999999998865
No 103
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.47 E-value=3.4e-13 Score=88.22 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=70.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~ 79 (131)
+|||+|||+|.++..+++.. ...++++|++++++..++++ +++++..|+.+ . ++
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~------------~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEK------------QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAF 71 (194)
T ss_pred EEEEeCCCCCHHHHHHHhcc------------CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhccccc
Confidence 68999999999988776542 45689999999999887531 45677777765 3 35
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
+.++||+|+++.++++++++...++++.+.+++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 567899999999999999999999998887664
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.47 E-value=1.8e-12 Score=83.00 Aligned_cols=99 Identities=23% Similarity=0.216 Sum_probs=82.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|||||||..+..++... +..+++++|.++++++..++|....+.+ ++.++.+++-+.-...
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~-----------p~~~v~AIe~~~~a~~~~~~N~~~fg~~-----n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAG-----------PSGRVIAIERDEEALELIERNAARFGVD-----NLEVVEGDAPEALPDL 100 (187)
T ss_pred EEEEeCCCccHHHHHHHHhC-----------CCceEEEEecCHHHHHHHHHHHHHhCCC-----cEEEEeccchHhhcCC
Confidence 58999999999999999443 4889999999999999999999998854 9999999976542222
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++|.|+...+ .+.+..++.+...|+|||++++.-
T Consensus 101 ~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 101 PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 37999999776 467788899999999999998743
No 105
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.3e-12 Score=94.78 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=85.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.++..+++++...+.. ++.++..|....+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMG----------DQGEIWAVDRSASRLKKLQENAQRLGLK-----SIKILAADSRNLLEL 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHHHHHcCCC-----eEEEEeCChhhcccc
Confidence 3699999999999999988764 2568999999999999999999887764 7899999987764
Q ss_pred --CCCCCeeEEEEccc------cccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 --IESDSYSAYTIAFG------IRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 --~~~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...++||.|++... ++.-++ ...+|.++.+.|||||+++...++-
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 33568999997432 222222 2577999999999999998776554
No 106
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.46 E-value=1.1e-12 Score=88.14 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=82.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..++..++ +..+++++|++++++..++++++..++.+ +++++.+|+.+. + +
T Consensus 71 ~vLEiGt~~G~s~l~la~~~~----------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~----~i~~~~gda~~~L~~l 136 (234)
T PLN02781 71 NTLEIGVFTGYSLLTTALALP----------EDGRITAIDIDKEAYEVGLEFIKKAGVDH----KINFIQSDALSALDQL 136 (234)
T ss_pred EEEEecCcccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHH
Confidence 589999999999998888765 36799999999999999999999988775 899999997653 1 1
Q ss_pred ----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.++||+|++... -+.....+..+.+.|+|||++++
T Consensus 137 ~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 1468999988532 24556788999999999999876
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=1.9e-12 Score=88.70 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.+++.++++.. .... .++.++..|+... ...
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~-----------~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i~~~~~d~~~~-~~~ 173 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERP-----------DAEVTAVDISPEALAVARRNAK-HGLG----ARVEFLQGDWFEP-LPG 173 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHH-hCCC----CcEEEEEccccCc-CCC
Confidence 689999999999999988764 5789999999999999999987 2222 2789999987542 234
Q ss_pred CCeeEEEEccccccc--------------------------cCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNV--------------------------TRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~--------------------------~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|+++...... .....++.++.++|+|||++++
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 689999985332110 1135678888899999999977
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.46 E-value=8.7e-13 Score=89.93 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.|||+|||+|.++..+++..+ ..+++++|+++++++.+++.+...... ++++++..|..+. ...
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~p-----------~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYLP-----------DTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAVH 133 (262)
T ss_pred EEEEECCCHhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHhC
Confidence 589999999999999988764 678999999999999999987654332 2899999997653 222
Q ss_pred CCCeeEEEEcccc-cccc---CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l-~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...- ...+ ....++.++.+.|+|||++++.-+.
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3679999985321 1122 2368999999999999999885433
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=1.3e-12 Score=91.04 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.|++.++++.+..........+++|...|+... .
T Consensus 147 ~VLDlGcGtG~~a~~la~~-------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~ 210 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALE-------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---S 210 (315)
T ss_pred EEEEecCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---C
Confidence 6999999999999988874 56899999999999999998765421100001578888887553 4
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++..+++++++. ...+..+.+ +.++|.++
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 679999999998887643 345555554 45655544
No 110
>PRK00811 spermidine synthase; Provisional
Probab=99.45 E-value=1e-12 Score=90.51 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=78.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc---CCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF---KVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~- 77 (131)
+||++|||+|..+..+++..+ ..+++++|+++.+++.+++.+.... ..+ ++++++..|....
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~~-----------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d---~rv~v~~~Da~~~l 144 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHPS-----------VEKITLVEIDERVVEVCRKYLPEIAGGAYDD---PRVELVIGDGIKFV 144 (283)
T ss_pred EEEEEecCchHHHHHHHcCCC-----------CCEEEEEeCCHHHHHHHHHHhHHhccccccC---CceEEEECchHHHH
Confidence 589999999999998887532 5689999999999999999876432 122 3899999997664
Q ss_pred CCCCCCeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||+|++...-...+. ...++..+++.|+|||++++
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 145 AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 234568999998643332221 26778999999999999876
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.45 E-value=1.7e-12 Score=88.66 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++++..+.. ++.++..|....+...
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMK----------NEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVFGAAV 138 (264)
T ss_pred EEEEECCCchHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHhhhhc
Confidence 699999999999999988764 2468999999999999999999887754 7888888877655444
Q ss_pred CCeeEEEEccccccc------c----------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNV------T----------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~------~----------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+.||.|++....... + ....+|..+.++|||||+++...++-
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 569999974322211 1 11358889999999999998776654
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.45 E-value=2.2e-12 Score=92.23 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....+ .+++++..|+.+... .
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p-----------~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERP-----------DAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFDTDMPS 316 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhcccccc
Confidence 589999999999998887643 6789999999999999999987654 178999999765432 2
Q ss_pred CCCeeEEEEccccccc---------------------c----CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNV---------------------T----RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~---------------------~----~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|+++-.-... . -..+++.++.++|+|||.+++ |++.
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~ 383 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF 383 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc
Confidence 3579999995432100 0 124677778889999999764 5544
No 113
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.7e-13 Score=90.46 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=73.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||+|||||-+++..++. +..+++++|+++.+++.++++...+++.. .++....+.... ..
T Consensus 164 ~~vlDvGcGSGILaIAa~kL------------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~~~~~~-~~ 226 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKL------------GAKKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGFLLLEV-PE 226 (300)
T ss_pred CEEEEecCChhHHHHHHHHc------------CCceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccccchhh-cc
Confidence 47999999999999987765 36779999999999999999999877652 122222222221 12
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|+++=. . .-......++.+.++|||++++.-
T Consensus 227 ~~~~DvIVANIL-A--~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANIL-A--EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehhh-H--HHHHHHHHHHHHHcCCCceEEEEe
Confidence 358999998642 2 123477889999999999998753
No 114
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=95.95 Aligned_cols=104 Identities=21% Similarity=0.184 Sum_probs=79.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....++.+ ++.++..|+.+. ...
T Consensus 141 ~VLDlG~GsG~iai~la~~~p-----------~~~v~avDis~~al~~A~~N~~~~~l~~----~v~~~~~D~~~~-~~~ 204 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELP-----------NANVIATDISLDAIEVAKSNAIKYEVTD----RIQIIHSNWFEN-IEK 204 (506)
T ss_pred EEEEccCchhHHHHHHHHHCC-----------CCeEEEEECCHHHHHHHHHHHHHcCCcc----ceeeeecchhhh-CcC
Confidence 589999999999998888754 6789999999999999999988776553 788998886542 334
Q ss_pred CCeeEEEEccccc--------------ccc------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIR--------------NVT------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~--------------~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++-... +.+ ....++.++.++|+|||.+++ |.+
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig 270 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG 270 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC
Confidence 6799999953211 101 124567888899999999875 544
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=2e-12 Score=93.67 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=85.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++++..+.. ++.+...|...++ ..
T Consensus 240 ~VLD~cagpGgkt~~la~~~~----------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMK----------DQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLTEYV 304 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhhhhh
Confidence 699999999999999988764 3578999999999999999999887754 6889999987764 34
Q ss_pred CCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||.|++...+... ++ ..++|.++.+.|+|||+++...++..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 5679999974332111 11 24668899999999999988777643
No 116
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.44 E-value=9e-13 Score=90.85 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=71.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||-+++..++. +..+++++|+++.+++.++++...+++.+ ++.+. ... ....
T Consensus 164 ~vLDvG~GSGILaiaA~kl------------GA~~v~a~DiDp~Av~~a~~N~~~N~~~~----~~~v~--~~~--~~~~ 223 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKL------------GAKKVVAIDIDPLAVEAARENAELNGVED----RIEVS--LSE--DLVE 223 (295)
T ss_dssp EEEEES-TTSHHHHHHHHT------------TBSEEEEEESSCHHHHHHHHHHHHTT-TT----CEEES--CTS--CTCC
T ss_pred EEEEeCCcHHHHHHHHHHc------------CCCeEEEecCCHHHHHHHHHHHHHcCCCe----eEEEE--Eec--cccc
Confidence 6899999999999877775 35689999999999999999999988774 55442 111 2234
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++-... -+...+..+.+.|+|||++++.-
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEcc
Confidence 7899999865322 34567788899999999998853
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=3.1e-12 Score=93.13 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=83.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|..+..+++... ...+++++|+++.+++.++++++..++. +++++..|....+ +.
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~----------~~~~V~avD~s~~~l~~~~~~~~~~g~~-----~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQ----------NRGQITAVDRYPQKLEKIRSHASALGIT-----IIETIEGDARSFS-PE 316 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhCCC-----eEEEEeCcccccc-cC
Confidence 699999999999998888764 2468999999999999999999887764 7899999987754 44
Q ss_pred CCeeEEEEccc------ccccc----------------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFG------IRNVT----------------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~------l~~~~----------------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+||+|++... +..-+ ....+|.++.++|+|||++++..++-.
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 67999996311 11011 123579999999999999998776653
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.43 E-value=3e-12 Score=92.80 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=81.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.++..++++++..+... ++.+..+|....+.
T Consensus 241 ~VLDlcag~G~kt~~la~~~~-----------~~~v~a~D~~~~~l~~~~~n~~r~g~~~----~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 241 TILDACAAPGGKTTHILELAP-----------QAQVVALDIHEHRLKRVYENLKRLGLTI----KAETKDGDGRGPSQWA 305 (426)
T ss_pred eEEEeCCCccHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeccccccccccc
Confidence 699999999999999988754 4689999999999999999998876532 45556666554432
Q ss_pred CCCCeeEEEEc------cccccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIA------FGIRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...+||.|++. ..++..++ ...+|.++.++|||||+++...++-
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 45679999963 22333332 2578999999999999999877765
No 119
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.42 E-value=3e-12 Score=83.77 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=81.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
.+||||||.|.+...++...+ ...++|+|+....+..+.++....++. |+.++..|+... .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-----------d~n~iGiE~~~~~v~~a~~~~~~~~l~-----Nv~~~~~da~~~l~~~ 83 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-----------DINFIGIEIRKKRVAKALRKAEKRGLK-----NVRFLRGDARELLRRL 83 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-----------TSEEEEEES-HHHHHHHHHHHHHHTTS-----SEEEEES-CTTHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHCC-----------CCCEEEEecchHHHHHHHHHHHhhccc-----ceEEEEccHHHHHhhc
Confidence 479999999999999999865 789999999999999999998887765 999999998773 2
Q ss_pred CCCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++++++|.|+.++.--|... -..++..+.+.|+|||.+.+..
T Consensus 84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 55689999999877665542 2688999999999999998853
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=5.2e-12 Score=91.55 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=81.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
..|||+|||+|..+..+++..+ ..+++++|.++.++..++++++..+. +++++..|..+.+
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-----------QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW 308 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-----------CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh
Confidence 3699999999999999988753 46899999999999999999987653 4678888887653
Q ss_pred CCCCCeeEEEEccccc------------cccC----------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIR------------NVTR----------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~------------~~~~----------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+..++||.|++..... +... ...++..+.+.|+|||++++..++-
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2356799999643221 1111 2367899999999999999876543
No 121
>KOG2940|consensus
Probab=99.41 E-value=9.1e-14 Score=91.38 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=89.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++||||+-|.....+... ...+++.+|.|..|++.++..- ... -.+.....|.+.+++.+
T Consensus 75 ~a~diGcs~G~v~rhl~~e------------~vekli~~DtS~~M~~s~~~~q-dp~------i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGE------------GVEKLIMMDTSYDMIKSCRDAQ-DPS------IETSYFVGDEEFLDFKE 135 (325)
T ss_pred ceeecccchhhhhHHHHhc------------chhheeeeecchHHHHHhhccC-CCc------eEEEEEecchhcccccc
Confidence 4789999999999888776 3568999999999999987542 222 15677888988899999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~ 128 (131)
+++|+|+++..+||.+++...+.+++..|||+|.++-.-++..+...
T Consensus 136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 99999999999999999999999999999999999876555554433
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.40 E-value=7.7e-12 Score=84.86 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=74.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....+ .+++..|+.+. + .
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~-----------~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALD-----------GIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDALPTA 149 (251)
T ss_pred EEEEecCchHHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhhcchh
Confidence 589999999999999987754 5689999999999999999987543 46777786543 1 1
Q ss_pred CCCCeeEEEEcccccc------cc----------------C----HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRN------VT----------------R----IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~------~~----------------~----~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..++||+|+++-.... .+ + ...++..+.++|+|||++++.
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1357999998643211 00 1 246777888999999999864
No 123
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.40 E-value=5.6e-12 Score=84.88 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||.|.|+|.++..+++.+. +..+|+.+|..++..+.|+++++..++.+ ++++...|+.+..+.
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v~----------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~----~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAVG----------PTGHVYTYEFREDRAEKARKNFERHGLDD----NVTVHHRDVCEEGFD 107 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHTTCCT----TEEEEES-GGCG--S
T ss_pred CEEEEecCCcHHHHHHHHHHhC----------CCeEEEccccCHHHHHHHHHHHHHcCCCC----CceeEecceeccccc
Confidence 4799999999999999999986 57899999999999999999999998875 899999998654332
Q ss_pred ---CCCeeEEEEccccccccCHHHHHHHHHHhc-cCCcEEEEE
Q psy890 81 ---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL-KPGGRFLCL 119 (131)
Q Consensus 81 ---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~p~G~l~~~ 119 (131)
+..+|.|+. .++++...+..+.+.| ++||++.+.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367999976 6788899999999999 899998764
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=1e-11 Score=90.49 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|..+..+++..+ +..+++++|+++.+++.++++++..+.. +++++..|..... +
T Consensus 253 ~VLDlgaG~G~~t~~la~~~~----------~~~~v~avDi~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 253 TVLDACAAPGGKTTHIAELLK----------NTGKVVALDIHEHKLKLIEENAKRLGLT-----NIETKALDARKVHEKF 317 (444)
T ss_pred EEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCCcccccchh
Confidence 689999999999999998763 2568999999999999999999887764 6899999987653 2
Q ss_pred CCCCeeEEEEccccccc------c---------C-------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNV------T---------R-------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~------~---------~-------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+ ++||+|++....... + + ...++..+.+.|||||.++...++
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 2 679999985432111 1 0 135789999999999999875544
No 125
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.38 E-value=1.9e-12 Score=83.33 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.+|||+|||.|.+...+.+.. +.+.+|+|++++.+..+.++ -+..++.|+++. .
T Consensus 15 srVLDLGCGdG~LL~~L~~~k------------~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK------------QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLAD 70 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc------------CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhh
Confidence 369999999999887776652 68899999999888777543 466888887764 3
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
+++++||.||++..+..+.+++..|.++.|+-+
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 889999999999999999999999999987733
No 126
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.38 E-value=5.7e-12 Score=82.90 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||||+++|+.+..+++.++ ...+++.+|.+++..+.|++.+...++.+ +++++.+|..+. +
T Consensus 48 ~vLEIGt~~GySal~la~~l~----------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~----~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALP----------EDGKITTIEIDPERAEIARENFRKAGLDD----RIEVIEGDALEVLPEL 113 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTST----------TTSEEEEEESSHHHHHHHHHHHHHTTGGG----GEEEEES-HHHHHHHH
T ss_pred eEEEeccccccHHHHHHHhhc----------ccceEEEecCcHHHHHHHHHHHHhcCCCC----cEEEEEeccHhhHHHH
Confidence 589999999999999999876 46899999999999999999999888765 899999997653 1
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++||+|+.-.. -.+....+..+.++|+|||.+++
T Consensus 114 ~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEE
Confidence 12358999988653 34667788889999999999976
No 127
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.38 E-value=3.4e-12 Score=83.12 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=68.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++... ...+++++|+|+.+ .. +++.++..|+.+..
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~----------~~~~v~~vDis~~~-----------~~-----~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVG----------GKGRVIAVDLQPMK-----------PI-----ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhC----------CCceEEEEeccccc-----------cC-----CCceEEEeeCCChhHHH
Confidence 689999999999998888753 25689999999853 11 16778888876532
Q ss_pred -----CCCCCeeEEEEccccc----c-cc------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 -----IESDSYSAYTIAFGIR----N-VT------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~----~-~~------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+.++||+|++....+ + .. .....+..+.+.|+|||++++..+
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3456799999854321 1 11 236789999999999999988543
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.36 E-value=1.4e-11 Score=83.74 Aligned_cols=97 Identities=9% Similarity=0.187 Sum_probs=75.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.... ..+++++|+++.+++.++++.. ++.++..|+.+.. ..
T Consensus 67 rVLDLGcGsGilsl~la~r~~-----------~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~-~~ 124 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCK-----------PEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE-SN 124 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-cc
Confidence 689999999999888877642 4689999999999999987641 6788999988754 34
Q ss_pred CCeeEEEEcccccccc--C------------------HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--R------------------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~------------------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++..+.+.+ + ..+.+.....+|+|+|.++++-
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 6799999976655432 1 2466777888999999887763
No 129
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=1.7e-11 Score=81.59 Aligned_cols=108 Identities=9% Similarity=-0.089 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-------cCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-------FKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~ 74 (131)
+||..|||.|.....|+.. +.+|+|+|+|+..++.+.+..... .....+..++++.++|+
T Consensus 46 rvLvPgCGkg~D~~~LA~~-------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~ 112 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSK-------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI 112 (226)
T ss_pred eEEEeCCCChHHHHHHHhC-------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC
Confidence 6899999999999999886 678999999999999986632100 00000112789999999
Q ss_pred ccCCCC---CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELPIE---SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~~~---~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+++.. .+.||.|+-...++.++ .+.+..+++.++|+|||.++++.+.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 987532 25799999999998886 4678999999999999998876554
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.9e-11 Score=84.07 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||||..+..++...+ ..+|+++|+|+.++..|+++....++. ++.++..|..+- ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-----------~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~-~~- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-----------DAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEP-LR- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-----------CCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccc-cC-
Confidence 489999999999999999864 579999999999999999999988762 666666665442 22
Q ss_pred CCeeEEEEcccc--cc----cc-------------------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGI--RN----VT-------------------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l--~~----~~-------------------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++-.- .. .+ -..+++.++.++|+|||.+++ +++..
T Consensus 175 ~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~ 241 (280)
T COG2890 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT 241 (280)
T ss_pred CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC
Confidence 389999996331 11 00 136778889999999888755 55533
No 131
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=1.5e-11 Score=81.27 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe-cccccC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE-ANAEEL-P- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~- 78 (131)
.|||+|++.|..+..++..++ ...+++.+|.++++.+.|+++++..++.+ ++..+. +|..+. .
T Consensus 62 ~iLEiGT~~GySal~mA~~l~----------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~----~i~~~~~gdal~~l~~ 127 (219)
T COG4122 62 RILEIGTAIGYSALWMALALP----------DDGRLTTIERDEERAEIARENLAEAGVDD----RIELLLGGDALDVLSR 127 (219)
T ss_pred eEEEeecccCHHHHHHHhhCC----------CCCeEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEEecCcHHHHHHh
Confidence 589999999999999999886 35699999999999999999999999886 787777 464442 2
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
...++||+|+.-. .-.+...++..+.++|+|||++++
T Consensus 128 ~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 128 LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 3468999998743 334667889999999999999987
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.34 E-value=9.7e-12 Score=79.68 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=70.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.... +++++..|+.+++++.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~-------------~~~v~~vE~~~~~~~~~~~~~~~~~-------~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 16 TVLEIGPGKGALTEELLER-------------AARVTAIEIDPRLAPRLREKFAAAD-------NLTVIHGDALKFDLPK 75 (169)
T ss_pred EEEEECCCccHHHHHHHhc-------------CCeEEEEECCHHHHHHHHHHhccCC-------CEEEEECchhcCCccc
Confidence 6899999999999999876 4589999999999999998886422 8999999999887766
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHh--ccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRV--LKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~p~G~l~~ 118 (131)
..||.|+++...+.. ...+..+.+. +.++|.+++
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 679999887655432 2334444433 335566543
No 133
>KOG2899|consensus
Probab=99.34 E-value=9.6e-12 Score=82.38 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=72.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC-------C----------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP-------N---------- 64 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~-------~---------- 64 (131)
.+|||||.+|.++..+++... ...+.|+|+++..++.|+++++...-..-. +
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~-----------~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~ 129 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFG-----------PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ 129 (288)
T ss_pred eeEeccCCcchhHHHHHHhhc-----------cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc
Confidence 479999999999999999986 567999999999999999987653200000 0
Q ss_pred -------------CceeEEecccc-c----CCCCCCCeeEEEEcccccccc------CHHHHHHHHHHhccCCcEEEE
Q psy890 65 -------------PRLRFLEANAE-E----LPIESDSYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 65 -------------~~~~~~~~d~~-~----~~~~~~~~D~i~~~~~l~~~~------~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.++.+...+.. + +......||+|+|...-.|+. .+.+++.++.++|.|||++++
T Consensus 130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 130 RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 01111100000 0 012345799999865544432 467899999999999999976
No 134
>PLN02476 O-methyltransferase
Probab=99.34 E-value=1.9e-11 Score=83.61 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|+++|..+..++..++ +..+++.+|.+++..+.|+++++..++.+ +++++.+|+.+. + +
T Consensus 121 ~VLEIGT~tGySal~lA~al~----------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~----~I~li~GdA~e~L~~l 186 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLP----------ESGCLVACERDSNSLEVAKRYYELAGVSH----KVNVKHGLAAESLKSM 186 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 689999999999999998765 35689999999999999999999998875 899999997653 2 1
Q ss_pred ----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+|+.-.. -.+....+..+.++|+|||.+++
T Consensus 187 ~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 1358999988543 34567888999999999999876
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.34 E-value=1.4e-11 Score=86.35 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=72.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC-C----CCceeEEecccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-P----NPRLRFLEANAE 75 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~d~~ 75 (131)
.+|||+|||-|......... ....++|+|++...++.|+++.....-... . .....++..|..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKA------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CeEEEecCCCchhHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 36999999977765555443 257899999999999999999932110000 0 013566777754
Q ss_pred cCC----CCC--CCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 76 ELP----IES--DSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 76 ~~~----~~~--~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
... +.. ..||+|-|.+++|+. . .....|..+.+.|+|||+++.+-..
T Consensus 132 ~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 132 SESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp CSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 321 233 489999999999875 3 3567899999999999999876543
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.32 E-value=2.8e-11 Score=80.67 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=87.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||||||.|.....+++..+ ...++|+|+....+..+.+.+...++. |+.+++.|+..+-
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP-----------~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNP-----------EKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYL 114 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCC-----------CCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhc
Confidence 479999999999999999865 678999999999999999999988865 8999999977752
Q ss_pred CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+++++.|-|..++.--|...+ ..+++.+.+.|+|||.+.+..
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 344599999998876666532 588999999999999998853
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.32 E-value=2.5e-11 Score=83.19 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||++|||+|..+..+++... ..+++++|+++++++.+++.+.... ..+ ++++++..|.... .
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~-----------~~~v~~veid~~vi~~a~~~~~~~~~~~~~---~~v~i~~~D~~~~l~ 140 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKS-----------VEKATLVDIDEKVIELSKKFLPSLAGSYDD---PRVDLQIDDGFKFLA 140 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCC-----------cceEEEEeCCHHHHHHHHHHhHhhcccccC---CceEEEECchHHHHH
Confidence 689999999999888877632 5689999999999999998875432 111 3688888775442 2
Q ss_pred CCCCCeeEEEEcccccccc--C--HHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVT--R--IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--~--~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++.......+ + ...+++.+++.|+|||++++.
T Consensus 141 ~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 141 DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2246899999865422222 2 367889999999999999875
No 138
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=88.27 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=80.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..++.. +..+++++|.|+.+++.+++++..+++.. .+++++..|+.+.- +
T Consensus 223 rVLDlfsgtG~~~l~aa~~------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMG------------GCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTY 287 (396)
T ss_pred eEEEeccCCCHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHH
Confidence 5899999999987765432 24589999999999999999999877641 16899999977642 1
Q ss_pred --CCCCeeEEEEccccc--cc-------cCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 --ESDSYSAYTIAFGIR--NV-------TRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~--~~-------~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...+||+|++.-.-- .- .+....+..+.++|+|||.++.+.++...
T Consensus 288 ~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 245799999863321 10 12445566778999999999987766443
No 139
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.31 E-value=2e-11 Score=81.92 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|+|.|..+..++... .+++++|.|..|....++ .+ .+.+ +..++...+
T Consensus 97 ~lLDlGAGdG~VT~~l~~~f-------------~~v~aTE~S~~Mr~rL~~----kg--------~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPLF-------------KEVYATEASPPMRWRLSK----KG--------FTVL--DIDDWQQTD 149 (265)
T ss_pred ceEEecCCCcHHHHHHHhhc-------------ceEEeecCCHHHHHHHHh----CC--------CeEE--ehhhhhccC
Confidence 58999999999999998864 579999999998666543 22 2222 222333334
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+||+|.|.+++....++...|.++++.|+|+|++++
T Consensus 150 ~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred CceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 6799999999999999999999999999999999886
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.30 E-value=2e-11 Score=81.09 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccCCC------CCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVP------VPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~d~ 74 (131)
+||..|||.|.....+++. +.+|+|+|+|+.+++.+.+.... ..... ....+++++++|+
T Consensus 40 rvLvPgCG~g~D~~~La~~-------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf 106 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQ-------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF 106 (218)
T ss_dssp EEEETTTTTSCHHHHHHHT-------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred eEEEeCCCChHHHHHHHHC-------------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence 5899999999999988886 67999999999999998443221 11000 0123678999999
Q ss_pred ccCCCCC-CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..++... ++||+|+=..+++.++ .+.+..+++.++|+|||.++++.+.
T Consensus 107 F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 107 FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 8875332 4799999998888876 6789999999999999995444333
No 141
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.29 E-value=2.5e-11 Score=92.69 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++..+++.. .+++++..|+.++- ..
T Consensus 541 rVLDlf~gtG~~sl~aa~~------------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~---~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALG------------GAKSTTTVDMSNTYLEWAERNFALNGLSG---RQHRLIQADCLAWLKEA 605 (702)
T ss_pred eEEEcCCCCCHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc---cceEEEEccHHHHHHHc
Confidence 6899999999999988874 24579999999999999999998877652 17899999976532 11
Q ss_pred CCCeeEEEEcccc-----------ccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGI-----------RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l-----------~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..+||+|++.-.- ....+....+..+.++|+|||.+++.....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4679999984321 112234667888899999999998765443
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=99.28 E-value=3.1e-11 Score=84.93 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=76.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-----hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-----RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
+||++|||+|.....+++.. +..+++++|+++++++.|++.. ....+.+ ++++++..|..+
T Consensus 153 rVLIIGgGdG~tlrelLk~~-----------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~D---pRV~vvi~Da~~ 218 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYE-----------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFD---NRVNVHVCDAKE 218 (374)
T ss_pred EEEEECCCHHHHHHHHHhcC-----------CCCeEEEEeCCHHHHHHHHhccccchhccccCCC---CceEEEECcHHH
Confidence 58999999999888887753 2578999999999999999621 1122222 489999999776
Q ss_pred C-CCCCCCeeEEEEccccccc---c--CHHHHHHHHHHhccCCcEEEEE
Q psy890 77 L-PIESDSYSAYTIAFGIRNV---T--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~---~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ....+.||+|++...-... . --..++..+++.|+|||++++-
T Consensus 219 fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 219 FLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 4 3345689999997431111 1 1256889999999999998764
No 143
>PLN02366 spermidine synthase
Probab=99.28 E-value=6.2e-11 Score=82.44 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||++|||.|..+..++++. +..+++.+|+++.+++.+++.+... .+.+ ++++++..|....-
T Consensus 94 rVLiIGgG~G~~~rellk~~-----------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d---pRv~vi~~Da~~~l~ 159 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHS-----------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDD---PRVNLHIGDGVEFLK 159 (308)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhhhhhccccCC---CceEEEEChHHHHHh
Confidence 58999999999999888762 2578999999999999999987643 2222 48999999965431
Q ss_pred -CCCCCeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++||+|++...-.+.+. -..++..+++.|+|||+++.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 23467999998544332221 24689999999999999864
No 144
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.26 E-value=2.1e-11 Score=83.87 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-------------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD------------------------- 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~------------------------- 56 (131)
+|...||+||.-...++-.+.+..+.. ....+++++|+|+.+++.|++..-.
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 688999999987666655543211100 0257899999999999999875211
Q ss_pred -ccCCCCCCCceeEEecccccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 57 -LFKVPVPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 57 -~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.+.-...+.|...|+.+.+++ .+.||+|+|.+++.++. ...+++..+.+.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 001111123578888888765433 57899999999998885 5779999999999999998763
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=99.25 E-value=6.5e-11 Score=78.90 Aligned_cols=95 Identities=9% Similarity=0.146 Sum_probs=69.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..... +..+++++|+++.++..++++.. ++.++..|+...++ .
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~--------~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~ 112 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYA--------KPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-D 112 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccC--------CCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-c
Confidence 69999999999999888764311 14689999999999999997742 57788889876544 4
Q ss_pred CCeeEEEEcccccccc--C----------HHHHHHHHHHhccCCcE
Q psy890 82 DSYSAYTIAFGIRNVT--R----------IDKALSEAYRVLKPGGR 115 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~----------~~~~l~~~~~~L~p~G~ 115 (131)
.+||+|+++-...... + ...++..+.+++++|+.
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5899999975543221 1 34577888885565554
No 146
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=5.8e-11 Score=80.15 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=82.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|+++|..+..++..++ +..+++.+|.+++....|++.+...++.+ +++++.++..+. + +
T Consensus 82 ~iLEiGT~~GySal~la~al~----------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~----~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 82 NTMEIGVYTGYSLLATALALP----------EDGKILAMDINRENYELGLPVIQKAGVAH----KIDFREGPALPVLDQM 147 (247)
T ss_pred EEEEEeChhhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCCCC----ceEEEeccHHHHHHHH
Confidence 689999999999999988765 46799999999999999999999988875 899999986653 2 1
Q ss_pred -----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 -----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+|+.-.. -......+..+.++|+|||++++
T Consensus 148 ~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEE
Confidence 1258999988643 33456778888999999999876
No 147
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.24 E-value=6e-11 Score=77.37 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEecccccC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~ 78 (131)
.|||||||||..+..+++.++ ...+.-.|.++..+..........+.+ ++ .-+..|+... +
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-----------~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-----------HLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVSAPPWP 91 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-----------CCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecCCCCCc
Confidence 389999999999999999986 688999999998877776666555443 32 2344555443 2
Q ss_pred C------CCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 I------ESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~------~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ...+||.|++.+++|-++ ..+..+....+.|++||.++++
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 2 346899999999999876 5678899999999999999885
No 148
>KOG1541|consensus
Probab=99.24 E-value=8.6e-11 Score=76.99 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=70.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc-cCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE-ELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 80 (131)
.|||||||+|-.+..+... +-.++|+|+|+.|++.+.++--. -.++..|+- .+|+.
T Consensus 53 ~iLDIGCGsGLSg~vL~~~-------------Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSDS-------------GHQWIGVDISPSMLEQAVERELE----------GDLILCDMGEGLPFR 109 (270)
T ss_pred EEEEeccCCCcchheeccC-------------CceEEeecCCHHHHHHHHHhhhh----------cCeeeeecCCCCCCC
Confidence 5899999999776655443 56799999999999999863221 234555544 46899
Q ss_pred CCCeeEEEEcccccccc-------C----HHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT-------R----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~-------~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
.++||-+|+...++|+= + +..++..++..|++|++.++
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 99999999977776652 1 34678889999999998765
No 149
>PRK03612 spermidine synthase; Provisional
Probab=99.24 E-value=6e-11 Score=87.92 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=77.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh--hh---ccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA--RD---LFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~d~~~ 76 (131)
+||++|||+|..+..++++ + ...+++++|+++++++.++++. .. ....+ ++++++..|..+
T Consensus 300 rVL~IG~G~G~~~~~ll~~-~----------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d---prv~vi~~Da~~ 365 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKY-P----------DVEQVTLVDLDPAMTELARTSPALRALNGGALDD---PRVTVVNDDAFN 365 (521)
T ss_pred eEEEEcCCccHHHHHHHhC-C----------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCC---CceEEEEChHHH
Confidence 6899999999999988875 2 2379999999999999999842 22 12222 389999999776
Q ss_pred C-CCCCCCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEEE
Q psy890 77 L-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ....++||+|++...-...+. ...+++.+++.|+|||++++.
T Consensus 366 ~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 366 WLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 4 223468999999754333221 245789999999999998763
No 150
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.24 E-value=5.5e-11 Score=77.76 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=70.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccC---------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFK--------------------- 59 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~--------------------- 59 (131)
+|...||++|.-+..++-.+.+..... .....+++++|+|+.+++.|++..-. ..+
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred EEEECCCCCChhHHHHHHHHHHHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 688899999987655554443200000 00257999999999999999773210 000
Q ss_pred -CCCCCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 60 -VPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 60 -~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+.-..+++|...|+.+.+...+.||+|+|.+++-++. ...+++..+.+.|+|||+|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00002357888888777333457899999999998886 4578999999999999999874
No 151
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.24 E-value=3.3e-12 Score=83.98 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=78.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
++||+|||||-....+... ..+++|+|+|++|+.++.++-- .-.+...+...+. .
T Consensus 128 ~~lDLGCGTGL~G~~lR~~-------------a~~ltGvDiS~nMl~kA~eKg~----------YD~L~~Aea~~Fl~~~ 184 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDM-------------ADRLTGVDISENMLAKAHEKGL----------YDTLYVAEAVLFLEDL 184 (287)
T ss_pred eeeecccCcCcccHhHHHH-------------HhhccCCchhHHHHHHHHhccc----------hHHHHHHHHHHHhhhc
Confidence 5899999999988888766 3579999999999999876421 2233344433221 4
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++.||+|.+.-++.++-+++.++.-....|+|||.+.|..-+.+.
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 5678999999999999999999999999999999999886444433
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.24 E-value=1.1e-10 Score=75.15 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~- 78 (131)
+|||+|||+|-.++.++...+ ..+|+.+|.++ .++..+.+++.+. .. .++.+...+..+..
T Consensus 48 ~VLELGaG~Gl~gi~~a~~~~-----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~----~~v~v~~L~Wg~~~~ 111 (173)
T PF10294_consen 48 RVLELGAGTGLPGIAAAKLFG-----------AARVVLTDYNE-VLELLRRNIELNGSLLD----GRVSVRPLDWGDELD 111 (173)
T ss_dssp EEEETT-TTSHHHHHHHHT-T------------SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HH
T ss_pred eEEEECCccchhHHHHHhccC-----------CceEEEeccch-hhHHHHHHHHhcccccc----ccccCcEEEecCccc
Confidence 689999999998888877633 67899999998 8998988887754 22 26777777754411
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
....+||+|+.+-++++-.....++.-+.++|+++|.+++....+
T Consensus 112 ~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 112 SDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 334689999999999988888899999999999998876654444
No 153
>KOG1499|consensus
Probab=99.22 E-value=6.4e-11 Score=82.20 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|-++...++. +..+++++|.|+ +.+.+.+.+..+++.+ .++++.+.+++..+|.
T Consensus 63 ~VlDVGcGtGILS~F~akA------------GA~~V~aVe~S~-ia~~a~~iv~~N~~~~----ii~vi~gkvEdi~LP~ 125 (346)
T KOG1499|consen 63 TVLDVGCGTGILSMFAAKA------------GARKVYAVEASS-IADFARKIVKDNGLED----VITVIKGKVEDIELPV 125 (346)
T ss_pred EEEEcCCCccHHHHHHHHh------------CcceEEEEechH-HHHHHHHHHHhcCccc----eEEEeecceEEEecCc
Confidence 5899999999999988776 467899999765 6699999999998885 7899999999887777
Q ss_pred CCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++.|+|++=|+=+++ .-++..|-.--+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 899999997664443 345677777778999999875
No 154
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.22 E-value=2.2e-10 Score=72.02 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+.|||+|+|||.++..++.+-- ....++.++.|++++....+.+. .+.++.+|+..+.
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv----------~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l~~~ 109 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGV----------RPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDLRTT 109 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCC----------CccceEEEEeCHHHHHHHHHhCC----------CccccccchhhHHHH
Confidence 3689999999999999988743 35689999999999999988774 4557778876653
Q ss_pred ---CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 ---IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+...||.|++...+.+++ ...++|+++...|.+||.++...++.
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4566799999998888887 45688999999999999999888773
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.20 E-value=1.2e-10 Score=84.63 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||+|-++...++...... ...+|++++.|+.++...++++...++.+ +++++..|+.++..+
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~-------~a~~VyAVEkn~~A~~~l~~~v~~n~w~~----~V~vi~~d~r~v~lp- 256 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAG-------GAVKVYAVEKNPNAVVTLQKRVNANGWGD----KVTVIHGDMREVELP- 256 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHC-------CESEEEEEESSTHHHHHHHHHHHHTTTTT----TEEEEES-TTTSCHS-
T ss_pred EEEEeCCCccHHHHHHHHHHHHhC-------CCeEEEEEcCCHhHHHHHHHHHHhcCCCC----eEEEEeCcccCCCCC-
Confidence 589999999999877766531000 25799999999998888888777777775 899999999998654
Q ss_pred CCeeEEEEccc--cccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
.++|+||+=.. +-.-+-....|....+.|||+|+++
T Consensus 257 ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 48999998322 2222234566888899999999875
No 156
>PLN02672 methionine S-methyltransferase
Probab=99.18 E-value=3.9e-10 Score=88.73 Aligned_cols=112 Identities=16% Similarity=0.033 Sum_probs=80.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-----------CCCCceeEE
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-----------VPNPRLRFL 70 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++...++..+ ....+++++
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~-----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWL-----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 589999999999999998864 5689999999999999999987653220 001268999
Q ss_pred ecccccCCCC-CCCeeEEEEcccc--c------------cc--------------------cC----HHHHHHHHHHhcc
Q psy890 71 EANAEELPIE-SDSYSAYTIAFGI--R------------NV--------------------TR----IDKALSEAYRVLK 111 (131)
Q Consensus 71 ~~d~~~~~~~-~~~~D~i~~~~~l--~------------~~--------------------~~----~~~~l~~~~~~L~ 111 (131)
..|+...... ..+||+|+++-.- . +- .+ ..+++.+..++|+
T Consensus 190 ~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~ 269 (1082)
T PLN02672 190 ESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK 269 (1082)
T ss_pred ECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc
Confidence 9997654211 1369999985320 0 00 00 2567888889999
Q ss_pred CCcEEEEEeccCCC
Q psy890 112 PGGRFLCLEFSHVN 125 (131)
Q Consensus 112 p~G~l~~~~~~~~~ 125 (131)
|||.++ .|++...
T Consensus 270 pgG~l~-lEiG~~q 282 (1082)
T PLN02672 270 PMGIMI-FNMGGRP 282 (1082)
T ss_pred CCCEEE-EEECccH
Confidence 999886 4666544
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=3.6e-10 Score=79.12 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=71.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|.++..++.. ..+++++|.++.+++.++++.+..+.. +++++..|+.++.. .
T Consensus 176 ~VLDl~cG~G~~sl~la~~-------------~~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~~ 237 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATP-------------GMQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATAQ 237 (315)
T ss_pred EEEEccCCCCHHHHHHHhc-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHhc
Confidence 6899999999999988874 568999999999999999999887763 79999999877532 2
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.||+|++.-.-. .....+.++...++|++++++
T Consensus 238 ~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 238 GEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred CCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEE
Confidence 34699999864311 122233344444677766655
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.16 E-value=7.4e-10 Score=72.69 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=72.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
++||+|||+|.++..++.. ...+++++|.++.+++.++++++..+.. +++++..|+.+. +..
T Consensus 56 ~vLDl~~GsG~l~l~~lsr------------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSR------------YAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQP 118 (199)
T ss_pred EEEEcCCCccHHHHHHHHc------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhhc
Confidence 5899999999999865443 2468999999999999999998877653 789999997653 222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~~~~~ 123 (131)
..+||+|++.-.... .-....+..+.. +|+|++++++ ++..
T Consensus 119 ~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~v-e~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYV-ESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEE-EecC
Confidence 346999999765321 112334444443 3788887765 5444
No 159
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.15 E-value=4.6e-10 Score=81.88 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.|||+|||+|.++..+++. ..+++++|+|+++++.++++....+.. +++++..|+.+.
T Consensus 300 ~VLDlgcGtG~~sl~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQ-------------AAEVVGVEGVEAMVERARENARRNGLD-----NVTFYHANLEEDFTDQ 361 (443)
T ss_pred EEEEEeccCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEeChHHhhhhh
Confidence 6899999999999988875 468999999999999999998877654 799999997653
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..++||+|++.-.-.. ....+..+.+ ++|++++++.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEE
Confidence 233467999988543222 2344554444 6888877664
No 160
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.13 E-value=5.8e-10 Score=82.46 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=84.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.+||||||.|.+...++...+ ...++|+|+....+..+.+.....++. |+.++..|+..+. +
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~p-----------~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMNP-----------DALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDLILNDL 413 (506)
T ss_pred eEEEECCCchHHHHHHHHhCC-----------CCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHHHHHhc
Confidence 479999999999999998865 688999999999999988887776665 8888888765432 6
Q ss_pred CCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+++|.|+.++.--|... -..++..+.+.|+|||.+.+.
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 7788999999888766653 267899999999999999875
No 161
>KOG2904|consensus
Probab=99.12 E-value=1.2e-09 Score=73.84 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (131)
.|||+|||+|..+..++..++ ...++++|.|+.++..+.+|.....+.. ++..+..+++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~-----------~~~v~AiD~S~~Ai~La~eN~qr~~l~g----~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP-----------QCTVTAIDVSKAAIKLAKENAQRLKLSG----RIEVIHNIMESDASDE 215 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC-----------CceEEEEeccHHHHHHHHHHHHHHhhcC----ceEEEecccccccccc
Confidence 489999999999999998875 6889999999999999999999887764 66666444332
Q ss_pred CCCCCCCeeEEEEcccc--c-cc-----------------------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGI--R-NV-----------------------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l--~-~~-----------------------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+...+++|+++++-.- + .+ ...-.+..-+.|+|+|||.+.+-
T Consensus 216 ~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 216 HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 23456789999986331 1 00 01244566677999999998763
No 162
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=3.7e-10 Score=73.64 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=57.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|-|+|||.+.++..+- ....|+.+|.-. . +-.+...|+.+.|+++
T Consensus 75 viaD~GCGdA~la~~~~--------------~~~~V~SfDLva-----------~---------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP--------------NKHKVHSFDLVA-----------P---------NPRVTACDIANVPLED 120 (219)
T ss_dssp -EEEES-TT-HHHHH----------------S---EEEEESS------------S---------STTEEES-TTS-S--T
T ss_pred EEEECCCchHHHHHhcc--------------cCceEEEeeccC-----------C---------CCCEEEecCccCcCCC
Confidence 68999999998774432 145799999743 1 3346779999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.|++++...|.. .++..++.+..|+|||||.++++|...
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 99999999877653 478889999999999999999998653
No 163
>KOG1975|consensus
Probab=99.09 E-value=6.3e-10 Score=76.66 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=76.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-CCCCceeEEecccccC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-VPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~--- 77 (131)
.++++|||-|......-+. +...++++|+++..+++|+++.+...... .....+.|+.+|-...
T Consensus 120 ~~~~LgCGKGGDLlKw~kA------------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~ 187 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKA------------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLM 187 (389)
T ss_pred ccceeccCCcccHhHhhhh------------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHH
Confidence 3688999998765544433 36789999999999999999987542111 0111367888874332
Q ss_pred ---CCCCCCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 ---PIESDSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++++.+||+|-|.+++|.. . ....+|.++.+.|+|||+++-+
T Consensus 188 d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 188 DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 2344459999999998763 3 4667899999999999999864
No 164
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=8.8e-10 Score=75.09 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=79.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-----ccCCCC--------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-----LFKVPV-------------- 62 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-----~~~~~~-------------- 62 (131)
+|.-.||+||.-...++-.+.+..+. ......+++++|+|..+++.|+...-. .+++..
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~--~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGK--LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhcc--ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 57889999998766665544322211 011258999999999999998763221 111100
Q ss_pred -----CCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 63 -----PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 63 -----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
-...+.|...|+...+...+.||+|+|.+++-.+. ...+++...+..|+|||++++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01235666666655443446799999999998886 4568899999999999999873
No 165
>KOG1500|consensus
Probab=99.04 E-value=1.4e-09 Score=75.56 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=75.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||+|||+|-++...+.. +..++++++. ++|.+.|++.++.+.+.+ ++..+.+.+++..++
T Consensus 180 iVlDVGaGSGILS~FAaqA------------GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~----rItVI~GKiEdieLP- 241 (517)
T KOG1500|consen 180 IVLDVGAGSGILSFFAAQA------------GAKKVYAVEA-SEMAQYARKLVASNNLAD----RITVIPGKIEDIELP- 241 (517)
T ss_pred EEEEecCCccHHHHHHHHh------------CcceEEEEeh-hHHHHHHHHHHhcCCccc----eEEEccCccccccCc-
Confidence 4799999999998877766 4678999996 559999999999887776 899999999988665
Q ss_pred CCeeEEEEccc---cccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++.|+||+--+ +-+-..+ ......++.|+|+|.++
T Consensus 242 Ek~DviISEPMG~mL~NERML-EsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERML-ESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhccEEEeccchhhhhhHHHH-HHHHHHHhhcCCCCccc
Confidence 67899998322 2222223 34456679999999875
No 166
>KOG1661|consensus
Probab=99.04 E-value=1.7e-09 Score=70.42 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC-----CCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-----PNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~ 76 (131)
.+||+|+|||+++..++..+.. ++...+|+|.-++.++.+++++......++ .+.+..++.+|-..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~---------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGA---------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcC---------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence 5899999999999999988751 244559999999999999998876542111 12357788888776
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-...+||.|.+..... ...+++...|+|||++++-
T Consensus 156 g~~e~a~YDaIhvGAaa~------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 156 GYAEQAPYDAIHVGAAAS------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCccCCcceEEEccCcc------ccHHHHHHhhccCCeEEEe
Confidence 655667899999975433 2335677788999999874
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.01 E-value=7.4e-09 Score=66.97 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=73.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||.-||+|.+.++.+.......+ ..... ..+++|.|+++.++..++++++..++.. .+.+...|+.++++..
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~----~i~~~~~D~~~l~~~~ 104 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPP-LNDIN-ELKIIGSDIDPKAVRGARENLKAAGVED----YIDFIQWDARELPLPD 104 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTST-TTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CG----GEEEEE--GGGGGGTT
T ss_pred EEeecCCCCCHHHHHHHHHhhCccc-ccccc-cccEEecCCCHHHHHHHHHHHHhcccCC----ceEEEecchhhccccc
Confidence 5899999999998887776542111 00000 1249999999999999999999888764 7899999999998777
Q ss_pred CCeeEEEEccccc--ccc--C----HHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIR--NVT--R----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~--~~~--~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
+++|.|+++...- .-. + ...++.++.+.+++..++++
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 8999999964432 111 1 24567888888888434433
No 168
>KOG3191|consensus
Probab=98.99 E-value=9.4e-09 Score=65.62 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=77.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
.+|||||+|..+..++..+. +...+.++|+|+.+++..++..+.++. .+..++.|+... +..+
T Consensus 47 ~lEIG~GSGvvstfL~~~i~----------~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~-l~~~ 109 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIG----------PQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSG-LRNE 109 (209)
T ss_pred EEEecCCcchHHHHHHHhcC----------CCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhh-hccC
Confidence 69999999999999988876 578899999999999998888876653 567778886653 2337
Q ss_pred CeeEEEEcccc--c-------------cc--c----CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 83 SYSAYTIAFGI--R-------------NV--T----RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 83 ~~D~i~~~~~l--~-------------~~--~----~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.|+++.+-.. . |. . -.++++.++-.+|+|.|.++++-..
T Consensus 110 ~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 78888774321 1 11 1 1467788888999999999886543
No 169
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.98 E-value=5.7e-09 Score=71.75 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=81.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.||-+|.|.|..++.++++.. ..+++.+|+++..++.+++.+........ .++++++..|..++- ..
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~-----------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLP-----------VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred eEEEECCCccHHHHHHHhcCC-----------cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhC
Confidence 589999999999999999864 67999999999999999998876541111 248999999977652 22
Q ss_pred CCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++||+|++-..-.--+ --..+++.+++.|+++|+++.-
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 34899999854433111 1268899999999999999764
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=3.2e-09 Score=72.41 Aligned_cols=71 Identities=8% Similarity=0.071 Sum_probs=59.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.... +++++.+|+.+.+++
T Consensus 32 ~VLEIG~G~G~lt~~L~~~-------------~~~v~~vEid~~~~~~l~~~~~~~~-------~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 32 PVLEIGPGKGALTDELAKR-------------AKKVYAIELDPRLAEFLRDDEIAAG-------NVEIIEGDALKVDLP- 90 (258)
T ss_pred eEEEEeCccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHhccCC-------CEEEEEeccccCCch-
Confidence 5899999999999999886 3589999999999999998875422 899999999887654
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
.||.|+++...+
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 479998876544
No 171
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=6.5e-09 Score=75.67 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=70.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. +++++..|+.+.
T Consensus 295 ~vLDl~cG~G~~sl~la~~-------------~~~V~~vE~~~~av~~a~~n~~~~~~~-----nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQ-------------AKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLAGTLETVLPKQ 356 (431)
T ss_pred EEEEcCCCcCHHHHHHHHh-------------CCEEEEEEcCHHHHHHHHHHHHHhCCC-----ceEEEeCCHHHHHHHH
Confidence 6899999999999998875 458999999999999999999877654 899999997653
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+....+||+|++.-.=.. -...++..+. .++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G--~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKG--CAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCC--CCHHHHHHHH-hcCCCEEEEE
Confidence 123457999987433111 1234444444 4788877665
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.2e-09 Score=67.66 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=57.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||||.++...+.. +..+|+++|+++++++.++++.+... .++.|+..|+.+..
T Consensus 48 ~V~DlG~GTG~La~ga~~l------------Ga~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv~~~~--- 106 (198)
T COG2263 48 TVLDLGAGTGILAIGAALL------------GASRVLAVDIDPEALEIARANAEELL------GDVEFVVADVSDFR--- 106 (198)
T ss_pred EEEEcCCCcCHHHHHHHhc------------CCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcchhhcC---
Confidence 5899999999998876554 35789999999999999999998732 27999999998865
Q ss_pred CCeeEEEEcccc
Q psy890 82 DSYSAYTIAFGI 93 (131)
Q Consensus 82 ~~~D~i~~~~~l 93 (131)
..+|.++++-.+
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 457788876444
No 173
>PLN02823 spermine synthase
Probab=98.97 E-value=8e-09 Score=72.74 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=76.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||.+|+|.|..+..+++... ..+++++|+++.+++.+++.+.... +.+ ++++++..|.... .
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~-----------~~~v~~VEiD~~vv~lar~~~~~~~~~~~d---prv~v~~~Da~~~L~ 171 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKT-----------VEKVVMCDIDQEVVDFCRKHLTVNREAFCD---KRLELIINDARAELE 171 (336)
T ss_pred EEEEECCCchHHHHHHHhCCC-----------CCeEEEEECCHHHHHHHHHhcccccccccC---CceEEEEChhHHHHh
Confidence 589999999999988887632 5689999999999999999876421 222 4899999996664 2
Q ss_pred CCCCCeeEEEEcccccc--c-c---CHHHHHH-HHHHhccCCcEEEE
Q psy890 79 IESDSYSAYTIAFGIRN--V-T---RIDKALS-EAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~--~-~---~~~~~l~-~~~~~L~p~G~l~~ 118 (131)
...++||+|++-..-.. . + --..++. .+++.|+|||++++
T Consensus 172 ~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 172 KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 33568999998632110 1 1 0245677 88999999999865
No 174
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=1.7e-08 Score=65.85 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=73.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
++||++||+|.++..++.. ...+++++|.++.+++.++++++..+..+ +++++..|+.+. . .
T Consensus 52 ~vLDLfaGsG~lglea~sr------------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~----~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSR------------GAKVAFLEEDDRKANQTLKENLALLKSGE----QAEVVRNSALRALKFL 115 (189)
T ss_pred EEEEecCCCcHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCcc----cEEEEehhHHHHHHHh
Confidence 5899999999999988886 24589999999999999999998876653 788999997543 1 1
Q ss_pred -C-CCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccC
Q psy890 80 -E-SDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 -~-~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~ 123 (131)
. ...||+|+..-.... ......+..+. .+|+++|.+ ++|+..
T Consensus 116 ~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~ii-v~E~~~ 161 (189)
T TIGR00095 116 AKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLI-VVEEDR 161 (189)
T ss_pred hccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEE-EEEecC
Confidence 1 234788888543322 22344444443 357777766 456554
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.96 E-value=9.4e-09 Score=71.86 Aligned_cols=80 Identities=10% Similarity=-0.112 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEe-cccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLE-ANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~~~~- 78 (131)
++||||||+|.+...++.... ..+++++|+++.+++.|++++... .+.. ++.+.. .+.....
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~-----------~~~~~atDId~~Al~~A~~Nv~~Np~l~~----~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEY-----------GWRFVGSDIDPQALASAQAIISANPGLNG----AIRLRLQKDSKAIFK 181 (321)
T ss_pred eEEEecCCccHHHHHHHhhCC-----------CCEEEEEeCCHHHHHHHHHHHHhccCCcC----cEEEEEccchhhhhh
Confidence 689999999988777766543 578999999999999999999987 5664 777753 3332221
Q ss_pred ---CCCCCeeEEEEccccccc
Q psy890 79 ---IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~ 96 (131)
.+.+.||+|+|+-.++.-
T Consensus 182 ~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 182 GIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred cccccCCceEEEEeCCCCcCc
Confidence 235689999998766543
No 176
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.96 E-value=2.5e-09 Score=73.91 Aligned_cols=76 Identities=11% Similarity=0.141 Sum_probs=59.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+++|.+||.|..+..+++..+ +..+|+++|.+++++..+++++.. . .+++++..++.++. .
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~----------~~g~VigiD~D~~al~~ak~~L~~---~----~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLG----------PKGRLIAIDRDPDAIAAAKDRLKP---F----GRFTLVHGNFSNLKEVL 84 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCC----------CCCEEEEEcCCHHHHHHHHHhhcc---C----CcEEEEeCCHHHHHHHH
Confidence 589999999999999999864 367899999999999999988755 1 28899999877653 1
Q ss_pred CC--CCeeEEEEccccc
Q psy890 80 ES--DSYSAYTIAFGIR 94 (131)
Q Consensus 80 ~~--~~~D~i~~~~~l~ 94 (131)
+. .++|.|++..++.
T Consensus 85 ~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 85 AEGLGKVDGILLDLGVS 101 (296)
T ss_pred HcCCCccCEEEECCCcc
Confidence 11 2688888755543
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.95 E-value=9.2e-09 Score=73.67 Aligned_cols=98 Identities=19% Similarity=0.133 Sum_probs=77.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||++||+|..+..++...+ ..+++++|+++.+++.++++++.++.. ++.+...|+...-...
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~-----------~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG-----------VEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHEE 123 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhhc
Confidence 689999999999999987643 458999999999999999999877654 5678888876542114
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.||+|++.-. .....++....+.++++|++++.
T Consensus 124 ~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 RKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 56999988532 23456777777888999999886
No 178
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.94 E-value=9.2e-09 Score=73.62 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
++||++||+|.++..++.. ..+++++|+++.+++.++++.+..+.. +++++..|+.+... .
T Consensus 236 ~vLDL~cG~G~~~l~la~~-------------~~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGP-------------DTQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATAQ 297 (374)
T ss_pred EEEEccCCccHHHHHHhhc-------------CCeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHhc
Confidence 5899999999999988753 568999999999999999999887653 79999999876421 1
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++.-.-.. -....+..+. .++|++++++.
T Consensus 298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEE
Confidence 245999988643211 1133344443 47888777663
No 179
>KOG1663|consensus
Probab=98.94 E-value=2.1e-08 Score=66.19 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=83.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+.||+|.=||..+..++..++ ...+++.+|++++.++.+.+..+..++.. +++++.++..+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp----------~dGrv~a~eid~~~~~~~~~~~k~agv~~----KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALP----------EDGRVVAIEIDADAYEIGLELVKLAGVDH----KITFIEGPALESLDEL 141 (237)
T ss_pred eEEEEecccCHHHHHHHHhcC----------CCceEEEEecChHHHHHhHHHHHhccccc----eeeeeecchhhhHHHH
Confidence 469999999999999999987 57899999999999999999998888876 899998886553
Q ss_pred --CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 --PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||.++.-. +-.+....+.++.+++++||++++
T Consensus 142 ~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEE
Confidence 13457899998743 333455788999999999999987
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.94 E-value=8.6e-09 Score=73.67 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+|++-|=||.++...+.. +..+++.+|.|...++.++++++.+++.. .+..|++.|..++-
T Consensus 220 rvLNlFsYTGgfSv~Aa~g------------GA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALG------------GASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVFKWLRKA 284 (393)
T ss_pred eEEEecccCcHHHHHHHhc------------CCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHHHHHHHH
Confidence 4899999999998877764 24499999999999999999999988765 36899999977652
Q ss_pred -CCCCCeeEEEEcc-ccc--------cccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 -IESDSYSAYTIAF-GIR--------NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 -~~~~~~D~i~~~~-~l~--------~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
-...+||+|++-- .+. -..+....+..+.++|+|||.+++...+..-
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 3346899999821 111 1225678889999999999999987766543
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.93 E-value=3.7e-09 Score=72.59 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=56.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. . +++++.+|+.+++++.
T Consensus 45 ~VLEiG~G~G~lt~~L~~~-------------~~~v~avE~d~~~~~~~~~~~~~-~-------~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLER-------------AAKVTAVEIDRDLAPILAETFAE-D-------NLTIIEGDALKVDLSE 103 (272)
T ss_pred eEEEeCCCccHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHhhcc-C-------ceEEEEChhhcCCHHH
Confidence 6899999999999999887 34899999999999999887643 2 8999999998876543
Q ss_pred CCeeEEEEccc
Q psy890 82 DSYSAYTIAFG 92 (131)
Q Consensus 82 ~~~D~i~~~~~ 92 (131)
-.++.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 22477777543
No 182
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.3e-08 Score=71.10 Aligned_cols=102 Identities=24% Similarity=0.251 Sum_probs=80.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEE-ecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL-EANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~ 80 (131)
.+||--||||.+.+.+... +.+++|.|++..|+..++.|++..+.+ ...+. ..|+..+|++
T Consensus 200 ~vlDPFcGTGgiLiEagl~-------------G~~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLM-------------GARVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKVLDATNLPLR 261 (347)
T ss_pred EeecCcCCccHHHHhhhhc-------------CceEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEecccccCCCC
Confidence 5899999999988776554 789999999999999999999988765 34444 4499999988
Q ss_pred CCCeeEEEEc--cccccc---cC----HHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIA--FGIRNV---TR----IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~--~~l~~~---~~----~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..++|.|++- ++-... .. ...+++.+.+.|++||++.++-.
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8889999983 332221 11 46789999999999999988654
No 183
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.92 E-value=1.5e-08 Score=66.53 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+.||-|.++..+++... ..+|+++|+++.+++.++++++.+++.. ++..+..|..++.. .
T Consensus 104 ~VlD~faGIG~f~l~~ak~~~-----------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~----~i~~~~~D~~~~~~-~ 167 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHGK-----------AKRVYAVDLNPDAVEYLKENIRLNKVEN----RIEVINGDAREFLP-E 167 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT------------SSEEEEEES-HHHHHHHHHHHHHTT-TT----TEEEEES-GGG----T
T ss_pred EEEEccCCccHHHHHHhhhcC-----------ccEEEEecCCHHHHHHHHHHHHHcCCCC----eEEEEcCCHHHhcC-c
Confidence 689999999999999988533 6789999999999999999999988875 78999999887754 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
..+|.|+++..- ....+|..+.+.+++||.+-
T Consensus 168 ~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence 789999886532 22356777889999998763
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=5.1e-09 Score=72.57 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+..+ +++++..|+.+.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~-------------~~~V~avEiD~~li~~l~~~~~~~~~~~----~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQL-------------AKKVIAIEIDPRMVAELKKRFQNSPLAS----KLEVIEGDALKTEF-- 99 (294)
T ss_pred EEEEecCchHHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHHHhcCCCC----cEEEEECCHhhhcc--
Confidence 5899999999999998875 4579999999999999999887654332 89999999887654
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
..||.|+++...+
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 3589888765443
No 185
>KOG3045|consensus
Probab=98.91 E-value=7.3e-09 Score=69.58 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=68.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|-|+|||.+.++. . ..-.|+.+|+-. .+-.++..|+.+.|.++
T Consensus 183 vIaD~GCGEakiA~----~------------~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS----S------------ERHKVHSFDLVA--------------------VNERVIACDMRNVPLED 226 (325)
T ss_pred EEEecccchhhhhh----c------------cccceeeeeeec--------------------CCCceeeccccCCcCcc
Confidence 58899999987654 1 134689999732 15567889999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.|++++...+. ..++..++.++.|+|++||.++++|...
T Consensus 227 ~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 227 ESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred CcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 9999999876654 3578889999999999999999998653
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=2.3e-08 Score=68.06 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=55.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ...++++|+++.++..++++..... +++++..|+.+.++.
T Consensus 32 ~VLEiG~G~G~lt~~L~~~-------------~~~v~~iE~d~~~~~~l~~~~~~~~-------~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 32 VVLEIGPGLGALTEPLLKR-------------AKKVTAIEIDPRLAEILRKLLSLYE-------RLEVIEGDALKVDLP- 90 (253)
T ss_pred EEEEeCCCCCHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHhCcCC-------cEEEEECchhcCChh-
Confidence 6899999999999999887 3469999999999999988775422 899999999887654
Q ss_pred CCee---EEEEcccc
Q psy890 82 DSYS---AYTIAFGI 93 (131)
Q Consensus 82 ~~~D---~i~~~~~l 93 (131)
.+| +|+++...
T Consensus 91 -~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -DFPKQLKVVSNLPY 104 (253)
T ss_pred -HcCCcceEEEcCCh
Confidence 455 66665443
No 187
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.89 E-value=8.9e-09 Score=66.79 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~- 78 (131)
.++||+-||||.++.+.+.+ +..+++.+|.++..+...+++++..+..+ +++.+..|.... .
T Consensus 44 ~~vLDLFaGSGalGlEALSR------------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~----~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSR------------GAKSVVFVEKNRKAIKIIKKNLEKLGLED----KIRVIKGDAFKFLLK 107 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHT-GG----GEEEEESSHHHHHHH
T ss_pred CeEEEcCCccCccHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHHhCCCc----ceeeeccCHHHHHHh
Confidence 36899999999999987766 45789999999999999999999877653 688888885432 1
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccCC
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~~ 124 (131)
....+||+|++--...........+..+. .+|+++|.+++ |+...
T Consensus 108 ~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~-E~~~~ 156 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII-EHSKK 156 (183)
T ss_dssp HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE-EEETT
T ss_pred hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE-EecCC
Confidence 24678999998533222111366666666 78898887754 66544
No 188
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.85 E-value=9.5e-08 Score=65.35 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=86.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~- 79 (131)
+||||.||.|+....++...+. ...++...|+|+.-++..++.++..++.+ -++|...|+.+.. +
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~---------~~~~i~LrDys~~Nv~~g~~li~~~gL~~----i~~f~~~dAfd~~~l~ 204 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPE---------RPDSILLRDYSPINVEKGRALIAERGLED----IARFEQGDAFDRDSLA 204 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCC---------CCceEEEEeCCHHHHHHHHHHHHHcCCcc----ceEEEecCCCCHhHhh
Confidence 6899999999998888877652 13689999999999999999999999884 5699999977642 1
Q ss_pred -CCCCeeEEEEccccccccCH---HHHHHHHHHhccCCcEEEEEe
Q psy890 80 -ESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~l~~~~ 120 (131)
-....++++++.....+++- ...+..+.+.+.|||+++.+-
T Consensus 205 ~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 205 ALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred ccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 13457999999998888863 456899999999999998753
No 189
>KOG3178|consensus
Probab=98.85 E-value=3.1e-08 Score=69.11 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
..+|+|.|.|+.+..++.+. .++-+++.+...+..+...+. . .+..+.+|..+. .|
T Consensus 180 ~avDvGgGiG~v~k~ll~~f-------------p~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~-~P- 235 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKY-------------PHIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQD-TP- 235 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhC-------------CCCceeecCHHHHHhhhhhhc-C--------Ccceeccccccc-CC-
Confidence 57999999999999998864 357777777777777766653 2 466677775554 22
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+-|+|++.|++|+++| ..++|+++...|+|||.++++|.--+
T Consensus 236 -~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 236 -KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 3479999999999985 56999999999999999999997444
No 190
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.84 E-value=1.5e-09 Score=78.67 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=64.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEE---eCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVA---DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
++||+|||+|.++..++++ +.....+ |..+.+++.|.++ +++ ..+-......+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-------------~V~t~s~a~~d~~~~qvqfaleR----Gvp------a~~~~~~s~rLP 176 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-------------NVTTMSFAPNDEHEAQVQFALER----GVP------AMIGVLGSQRLP 176 (506)
T ss_pred EEEeccceeehhHHHHhhC-------------CceEEEcccccCCchhhhhhhhc----Ccc------hhhhhhcccccc
Confidence 4799999999999888775 2222222 3334455555433 211 111122346778
Q ss_pred CCCCCeeEEEEccccccc-cCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..+||+|.|+.++..+ ++-...|-++.|+|+|||+++..
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence 999999999999987555 44456899999999999998763
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.83 E-value=7.6e-08 Score=70.58 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=82.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
.+|||+++++|.-+..++..++ ....+++.|+++.-+...+++++..+.. ++.+...|...+. .
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~----------~~g~lvA~D~~~~R~~~L~~nl~r~G~~-----nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMN----------NQGAIVANEYSASRVKVLHANISRCGVS-----NVALTHFDGRVFGAA 179 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCchhhhhhh
Confidence 3699999999999999999875 3568999999999999999999988765 7788888876553 2
Q ss_pred CCCCeeEEEEcccccc------ccC----------------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRN------VTR----------------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~------~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
....||.|++-..+.. -++ -.++|.+..++|||||+++...++
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2357999996333221 111 156788899999999999876555
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.83 E-value=2.2e-08 Score=67.88 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-+|.|.|..+..+++..+ ..+++++|+++.+++.+++-+.... ..+ ++++++..|....-
T Consensus 79 ~VLiiGgG~G~~~~ell~~~~-----------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d---~r~~i~~~Dg~~~l~ 144 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHPP-----------VESITVVEIDPEVVELARKYFPEFSEGLDD---PRVRIIIGDGRKFLK 144 (246)
T ss_dssp EEEEEESTTSHHHHHHTTSTT------------SEEEEEES-HHHHHHHHHHTHHHHTTGGS---TTEEEEESTHHHHHH
T ss_pred ceEEEcCCChhhhhhhhhcCC-----------cceEEEEecChHHHHHHHHhchhhccccCC---CceEEEEhhhHHHHH
Confidence 589999999999998887642 5789999999999999998776532 222 48999999966542
Q ss_pred CCCC-CeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESD-SYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~-~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+ +||+|+.-..-...+. -..+++.+++.|+|+|++++-.
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 2233 8999998433221111 2688999999999999998743
No 193
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=6e-08 Score=68.15 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=87.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+-+|-|.+++.++..- ..+|+++|+|+.+++..+++++.+++.. .+..+.+|........
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~g------------~~~V~A~diNP~A~~~L~eNi~LN~v~~----~v~~i~gD~rev~~~~ 254 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKKG------------RPKVYAIDINPDAVEYLKENIRLNKVEG----RVEPILGDAREVAPEL 254 (341)
T ss_pred EEEEccCCcccchhhhhhcC------------CceEEEEecCHHHHHHHHHHHHhcCccc----eeeEEeccHHHhhhcc
Confidence 68999999999999998872 4459999999999999999999988875 6899999998876555
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
..+|.|+++..- ....++....+.++++|.+.+.+......
T Consensus 255 ~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 255 GVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 789999987543 44667788888899999998877665443
No 194
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=2.6e-08 Score=66.62 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=55.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH-HHHHhhhccCCCCCCCce-eEEecccc----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV-GEQRARDLFKVPVPNPRL-RFLEANAE---- 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~d~~---- 75 (131)
++||+|||+|.++..+++. +..+++++|+++.++.. .+++. ++ .+...|+.
T Consensus 78 ~vlDiG~gtG~~t~~l~~~------------ga~~v~avD~~~~~l~~~l~~~~-----------~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQK------------GAKEVYGVDVGYNQLAEKLRQDE-----------RVKVLERTNIRYVTP 134 (228)
T ss_pred EEEEcccCCCHHHHHHHHc------------CCCEEEEEeCCHHHHHHHHhcCC-----------CeeEeecCCcccCCH
Confidence 6899999999999988886 25689999999988775 22221 21 12222222
Q ss_pred -cCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 76 -ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 76 -~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+....-..+|+++.+..+ .+..+.+.|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEE
Confidence 221122357877765443 37788888999 76654
No 195
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.81 E-value=2.8e-08 Score=68.43 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=76.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+||++-|=||.++...+.. +..+++.+|.|..+++.+++++..+++.. .+++++..|+.+. .
T Consensus 126 rvLnlFsYTGgfsv~Aa~g------------GA~~v~~VD~S~~al~~a~~N~~lNg~~~---~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 126 RVLNLFSYTGGFSVAAAAG------------GAKEVVSVDSSKRALEWAKENAALNGLDL---DRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp EEEEET-TTTHHHHHHHHT------------TESEEEEEES-HHHHHHHHHHHHHTT-CC---TCEEEEES-HHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCc---cceEEEecCHHHHHHHH
Confidence 6899999999998876653 34689999999999999999999887653 2789999997653 1
Q ss_pred CCCCCeeEEEEccc-c--cc---ccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 IESDSYSAYTIAFG-I--RN---VTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 ~~~~~~D~i~~~~~-l--~~---~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
-...+||+||+--. + .. ..+....+..+.++|+|||.++++..+...
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 12468999998211 1 11 125567888899999999999887766543
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.80 E-value=7.6e-09 Score=68.55 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
++||.+.|-|+.++..++. +..+|+-++.+++.++.+.-|.-+.++.+ ..++++.+|..+. .+
T Consensus 137 rVLDtC~GLGYtAi~a~~r------------GA~~VitvEkdp~VLeLa~lNPwSr~l~~---~~i~iilGD~~e~V~~~ 201 (287)
T COG2521 137 RVLDTCTGLGYTAIEALER------------GAIHVITVEKDPNVLELAKLNPWSRELFE---IAIKIILGDAYEVVKDF 201 (287)
T ss_pred EeeeeccCccHHHHHHHHc------------CCcEEEEEeeCCCeEEeeccCCCCccccc---cccEEecccHHHHHhcC
Confidence 5899999999999988886 34599999999999999987766555443 2678999997765 47
Q ss_pred CCCCeeEEEEc---cccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~---~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+++||.|+-- +++..----..+..+++|+|+|||+++..-
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 88999999642 111111123688999999999999998753
No 197
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.80 E-value=5.2e-08 Score=67.03 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=70.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|+|+|..+-.+...++ ...+++++|.|+.|++.++.......... ...+......+ ..+-
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~----------~~~~~~~vd~s~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~-~~~~ 100 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWP----------SLKEYTCVDRSPEMLELAKRLLRAGPNNR----NAEWRRVLYRD-FLPF 100 (274)
T ss_pred eEEEecCChHHHHHHHHHHhc----------CceeeeeecCCHHHHHHHHHHHhcccccc----cchhhhhhhcc-cccC
Confidence 699999999987776666665 25689999999999999988776543211 11111111111 1111
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...|+|+++++|..+++ +..++.++-+.+++ +++++|.+.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 23499999999988875 34555555555544 89999987654
No 198
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.80 E-value=1.2e-07 Score=66.45 Aligned_cols=107 Identities=12% Similarity=-0.053 Sum_probs=76.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.|+|+|||+|.-+..+++.+.... ....++.+|+|.++++.+.+++.....+. -.+.-+.+|+.+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~-------~~~~Y~plDIS~~~L~~a~~~L~~~~~p~---l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK-------KSVDYYALDVSRSELQRTLAELPLGNFSH---VRCAGLLGTYDDGLAWL 148 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC-------CCceEEEEECCHHHHHHHHHhhhhccCCC---eEEEEEEecHHHHHhhc
Confidence 589999999999999988875211 24689999999999999999987333321 0344577877553
Q ss_pred CC--CCCCeeEEEEcc-cccccc--CHHHHHHHHHH-hccCCcEEEE
Q psy890 78 PI--ESDSYSAYTIAF-GIRNVT--RIDKALSEAYR-VLKPGGRFLC 118 (131)
Q Consensus 78 ~~--~~~~~D~i~~~~-~l~~~~--~~~~~l~~~~~-~L~p~G~l~~ 118 (131)
+- ......+++... .+.+++ +...+|.++++ .|+||+.+++
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 123356666554 677876 44588999999 9999999877
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.78 E-value=1.6e-07 Score=60.97 Aligned_cols=98 Identities=24% Similarity=0.237 Sum_probs=77.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++|+|+|.|-=++.++-..+ ..+++.+|...--+...+......++. +++.+...+++ ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-----------~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~-~~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-----------DLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE-PEYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-----------TSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH-TTTT
T ss_pred eEEecCCCCCChhHHHHHhCC-----------CCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc-cccC
Confidence 589999999988887777664 788999999997777777777776765 89999999888 4456
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|++.. +......+.-+.+.+++||++++.-
T Consensus 114 ~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 114 ESFDVVTARA----VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp T-EEEEEEES----SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCccEEEeeh----hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 7899998865 4466778888999999999998864
No 200
>PRK00536 speE spermidine synthase; Provisional
Probab=98.78 E-value=9.7e-08 Score=65.06 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+||-+|.|.|...+.++++ + .+++.+|+++.+++.+++-++.. .+.+ ++++++.. +.+ .
T Consensus 75 ~VLIiGGGDGg~~REvLkh------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~D---pRv~l~~~-~~~--~ 135 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFKY------------D-THVDFVQADEKILDSFISFFPHFHEVKNN---KNFTHAKQ-LLD--L 135 (262)
T ss_pred eEEEEcCCchHHHHHHHCc------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcC---CCEEEeeh-hhh--c
Confidence 5899999999999999997 2 38999999999999999966542 3444 47777652 111 1
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+||+-.. ....+...+++.|+|||+++.
T Consensus 136 ~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 136 DIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 2367999998632 335778899999999999965
No 201
>KOG2915|consensus
Probab=98.74 E-value=1.9e-07 Score=63.29 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=82.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|-|.|+|.++-.+++.+. +-.+++-+|..+.-.+++.+.++..++.+ ++.+..-|+....+.
T Consensus 108 vV~EsGTGSGSlShaiaraV~----------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~----~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 108 VVLESGTGSGSLSHAIARAVA----------PTGHLYTFEFHETRAEKALEEFREHGIGD----NVTVTHRDVCGSGFLI 173 (314)
T ss_pred EEEecCCCcchHHHHHHHhhC----------cCcceEEEEecHHHHHHHHHHHHHhCCCc----ceEEEEeecccCCccc
Confidence 689999999999999999986 57899999999999999999999999886 999999998876543
Q ss_pred -CCCeeEEEEccccccccCHHHHHHHHHHhccCCcE
Q psy890 81 -SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~ 115 (131)
...+|.|+. .++.+..++..+.++||.+|.
T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 457888866 677888888999999998875
No 202
>KOG1269|consensus
Probab=98.72 E-value=3.1e-08 Score=70.32 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=88.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++++|||.|..+..+... ....++++|.++..+.++........+.. +..++..++.+.++++
T Consensus 113 ~~~~~~~g~~~~~~~i~~f------------~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~----k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVF------------KKAGVVGLDNNAYEAFRANELAKKAYLDN----KCNFVVADFGKMPFED 176 (364)
T ss_pred cccccCcCcCchhHHHHHh------------ccCCccCCCcCHHHHHHHHHHHHHHHhhh----hcceehhhhhcCCCCc
Confidence 3678999999888777555 35789999999988888877766655553 5566888999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..||.+.+.-+.++.++....++++.+.++|||+++..++.
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999999999876544
No 203
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.70 E-value=2.5e-07 Score=63.19 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-------------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD------------------------- 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~------------------------- 56 (131)
+||-.|||.|+++..++.. +..+.+.|.|--|+-...-.+..
T Consensus 59 ~VLVPGsGLGRLa~Eia~~-------------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dq 125 (270)
T PF07942_consen 59 RVLVPGSGLGRLAWEIAKL-------------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQ 125 (270)
T ss_pred EEEEcCCCcchHHHHHhhc-------------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHh
Confidence 5889999999999999886 67899999999886654332221
Q ss_pred ---ccCCC-------CCCCceeEEecccccCCCCC---CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 57 ---LFKVP-------VPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 57 ---~~~~~-------~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
...+| ....++....+|+.+...+. ++||.|++.+.+...++....+..+.++|||||+++
T Consensus 126 lr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 126 LRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 00000 00224555666666554333 689999999999988999999999999999999775
No 204
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.70 E-value=3e-07 Score=62.99 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=66.6
Q ss_pred ceeeeecccchhhHHHhhh-hcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-hccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNY-VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-DLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|+.||+|+=-+|..++.. .. .+..++++|++++..+.+++.+. ..++.. +++|+..|....+.
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~----------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~----~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHG----------PGARVHNIDIDPEANELARRLVASDLGLSK----RMSFITADVLDVTY 188 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HT----------T--EEEEEESSHHHHHHHHHHHH---HH-S----SEEEEES-GGGG-G
T ss_pred eEEEEcCCCcchHHHHHHHHhC----------CCCeEEEEeCCHHHHHHHHHHHhhcccccC----CeEEEecchhcccc
Confidence 5889999987666555443 22 25789999999999999998877 445543 89999999887655
Q ss_pred CCCCeeEEEEccccc-cccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~-~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.-..||+|+...... .-.+..+++.++.+.++||..+++-
T Consensus 189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 556899998876654 3347889999999999999998775
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.69 E-value=4.5e-07 Score=69.77 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=78.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC-------------------------------CCCCeEEEEeCCHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE-------------------------------HCAPHVTVADINRAMLDVG 50 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~-------------------------------~~~~~~~~~D~s~~~~~~~ 50 (131)
.++|.+||+|.+.+..+....+.+++.... ....+++|+|+++.++..+
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAA 272 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHH
Confidence 589999999999888776533222221110 0124799999999999999
Q ss_pred HHHhhhccCCCCCCCceeEEecccccCCCC--CCCeeEEEEccccc-cc---cCHHHHHHHHHHhcc---CCcEEEEEe
Q psy890 51 EQRARDLFKVPVPNPRLRFLEANAEELPIE--SDSYSAYTIAFGIR-NV---TRIDKALSEAYRVLK---PGGRFLCLE 120 (131)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~-~~---~~~~~~l~~~~~~L~---p~G~l~~~~ 120 (131)
++++...++.+ .+.+...|+.+++.+ .++||+|+++-..- .+ .+......++.+.++ +|+.+++..
T Consensus 273 ~~N~~~~g~~~----~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 273 RKNARRAGVAE----LITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHcCCCc----ceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99999988775 789999998887533 35799999974431 11 233344444444443 888776654
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.68 E-value=2e-07 Score=66.29 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=50.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.+||++||+|.++..+++. ..+++++|+++++++.++++....+.. +++++..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la~~-------------~~~v~~vE~~~~av~~a~~n~~~~~~~-----~v~~~~~d~~~~ 257 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN-------------FRRVLATEIAKPSVNAAQYNIAANNID-----NVQIIRMSAEEF 257 (353)
T ss_pred cEEEEeccccHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEEcCHHHH
Confidence 4899999999999988776 358999999999999999999887754 789999997663
No 207
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.68 E-value=1.3e-06 Score=53.99 Aligned_cols=105 Identities=28% Similarity=0.334 Sum_probs=71.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPIE 80 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~ 80 (131)
++|+|||+|... .+..... ....++++|.++.++...+..... .... .+.+...+... .++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------RGAYVVGVDLSPEMLALARARAEG-AGLG----LVDFVVADALGGVLPFE 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------CCceEEEEeCCHHHHHHHHhhhhh-cCCC----ceEEEEeccccCCCCCC
Confidence 799999999977 2323211 124788899999999885544433 2110 15777777665 5665
Q ss_pred C-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 S-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
. ..||++ ......+.......+.++.+.++|+|.+++......
T Consensus 116 ~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 116 DSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5 489999 544443333388899999999999999988766544
No 208
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.66 E-value=3.6e-07 Score=56.48 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=61.7
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCCCCeeEEEEccccccc------cC---HHHHHH
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV------TR---IDKALS 104 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~------~~---~~~~l~ 104 (131)
+|+++|+.+++++..++++...+..+ +++++..+-+.+. .+.+++|.++.+.+.--- .. -..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~----~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLED----RVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GS----GEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCC----cEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999999987764 8999998877764 333589999988663111 12 356788
Q ss_pred HHHHhccCCcEEEEEeccCCCc
Q psy890 105 EAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 105 ~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.+.+.|+|||++.++-+.+++.
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCH
T ss_pred HHHHhhccCCEEEEEEeCCCCC
Confidence 8899999999999988877664
No 209
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.66 E-value=2.6e-07 Score=65.96 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=49.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+||++||+|.++..+++. ..+++++|.++.+++.++++....+.. +++++..|+.+
T Consensus 209 ~vLDl~~G~G~~sl~la~~-------------~~~v~~vE~~~~ai~~a~~N~~~~~~~-----~v~~~~~d~~~ 265 (362)
T PRK05031 209 DLLELYCGNGNFTLALARN-------------FRRVLATEISKPSVAAAQYNIAANGID-----NVQIIRMSAEE 265 (362)
T ss_pred eEEEEeccccHHHHHHHhh-------------CCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEECCHHH
Confidence 5899999999999988775 458999999999999999999887654 79999999765
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.65 E-value=2.8e-07 Score=65.92 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=78.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+.||+|..++..+.... ...++++.|+++..++.++++++..+.. +++++..|+...- ..
T Consensus 47 ~vLD~faGsG~rgir~a~e~~----------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~~ 111 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIE----------GVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRYR 111 (374)
T ss_pred EEEECCCchhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHHh
Confidence 689999999999999988742 2468999999999999999999877643 5788888877642 22
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|...- . ..+..++..+.+.++++|.+.++
T Consensus 112 ~~~fDvIdlDP-f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 112 NRKFHVIDIDP-F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCCCEEEeCC-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 35699998743 1 24457888899999999999886
No 211
>KOG3420|consensus
Probab=98.63 E-value=6.5e-08 Score=59.80 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=60.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+.++|+|||.|.++...... ....+.|+|+++++++.+.++.+...+ ++.+.+.|+.+..+.
T Consensus 50 kkl~DLgcgcGmLs~a~sm~------------~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~ 111 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMP------------KNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK 111 (185)
T ss_pred cchhhhcCchhhhHHHhhcC------------CCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc
Confidence 46899999999998554433 256799999999999999999887654 678888998887666
Q ss_pred CCCeeEEEEcccc
Q psy890 81 SDSYSAYTIAFGI 93 (131)
Q Consensus 81 ~~~~D~i~~~~~l 93 (131)
.+.||.++.+..+
T Consensus 112 ~g~fDtaviNppF 124 (185)
T KOG3420|consen 112 GGIFDTAVINPPF 124 (185)
T ss_pred CCeEeeEEecCCC
Confidence 7889999886554
No 212
>PRK04148 hypothetical protein; Provisional
Probab=98.58 E-value=1.2e-06 Score=53.80 Aligned_cols=93 Identities=12% Similarity=-0.019 Sum_probs=63.3
Q ss_pred Cceeeeecccch-hhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+++||+|||+|. .+..+.+. +.+|+++|+++..++.++++ .+.++..|+.+.+.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~-------------G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKES-------------GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNL 72 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCH
Confidence 368999999996 66655543 67999999999988877654 35677888776543
Q ss_pred C-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 E-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. -+.+|+|.+.. -.+++...+.++.+... .-+++..++.
T Consensus 73 ~~y~~a~liysir---pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 73 EIYKNAKLIYSIR---PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred HHHhcCCEEEEeC---CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 2 35689998844 34466666666665543 4455554444
No 213
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.57 E-value=1.6e-07 Score=59.63 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=54.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|+|+.||.|..++.+++. ..+|+++|+++..+..++.+.+..++.+ ++.++.+|..+.. .
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-------------~~~Viaidid~~~~~~a~hNa~vYGv~~----~I~~i~gD~~~~~~~~ 64 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-------------FDRVIAIDIDPERLECAKHNAEVYGVAD----NIDFICGDFFELLKRL 64 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-------------T-EEEEEES-HHHHHHHHHHHHHTT-GG----GEEEEES-HHHHGGGB
T ss_pred EEEEeccCcCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEeCCHHHHHhhc
Confidence 6899999999999999997 4689999999999999999999998775 8999999977753 2
Q ss_pred CCCC-eeEEEEccc
Q psy890 80 ESDS-YSAYTIAFG 92 (131)
Q Consensus 80 ~~~~-~D~i~~~~~ 92 (131)
.... +|+|+++-.
T Consensus 65 ~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 65 KSNKIFDVVFLSPP 78 (163)
T ss_dssp ------SEEEE---
T ss_pred cccccccEEEECCC
Confidence 2222 899998543
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.8e-07 Score=62.49 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=58.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||+|.|.+|..+++. ..+|+++++++.++...++...... +++++..|+.+.+++.
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~~~~-------n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 33 NVLEIGPGLGALTEPLLER-------------AARVTAIEIDRRLAEVLKERFAPYD-------NLTVINGDALKFDFPS 92 (259)
T ss_pred eEEEECCCCCHHHHHHHhh-------------cCeEEEEEeCHHHHHHHHHhccccc-------ceEEEeCchhcCcchh
Confidence 6899999999999999997 5679999999999999998886433 8999999998887654
Q ss_pred C-CeeEEEEcc
Q psy890 82 D-SYSAYTIAF 91 (131)
Q Consensus 82 ~-~~D~i~~~~ 91 (131)
- .++.|+++.
T Consensus 93 l~~~~~vVaNl 103 (259)
T COG0030 93 LAQPYKVVANL 103 (259)
T ss_pred hcCCCEEEEcC
Confidence 2 467777653
No 215
>KOG0820|consensus
Probab=98.55 E-value=3.8e-07 Score=61.88 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|.|||.++..+++. +.+|+++++++.|+....++........ ..+++.+|+.+.+++
T Consensus 61 ~VLEvGPGTGnLT~~lLe~-------------~kkVvA~E~Dprmvael~krv~gtp~~~----kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 61 VVLEVGPGTGNLTVKLLEA-------------GKKVVAVEIDPRMVAELEKRVQGTPKSG----KLQVLHGDFLKTDLP- 122 (315)
T ss_pred EEEEeCCCCCHHHHHHHHh-------------cCeEEEEecCcHHHHHHHHHhcCCCccc----eeeEEecccccCCCc-
Confidence 6899999999999999997 6799999999999999999987655443 799999998876543
Q ss_pred CCeeEEEEcc
Q psy890 82 DSYSAYTIAF 91 (131)
Q Consensus 82 ~~~D~i~~~~ 91 (131)
.||.++++.
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 488888843
No 216
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.54 E-value=4.3e-08 Score=58.01 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=43.6
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CCCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PIES 81 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~ 81 (131)
||+|+..|..+..+++.++.. ...+++++|..+. .+..++.++..++.+ +++++..+..+. .++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~--------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~----~~~~~~g~s~~~l~~~~~ 67 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN--------GRGKLYSVDPFPG-DEQAQEIIKKAGLSD----RVEFIQGDSPDFLPSLPD 67 (106)
T ss_dssp ----------------------------------EEEESS-------------GGG-B----TEEEEES-THHHHHHHHH
T ss_pred Ccccccccccccccccccccc--------ccCCEEEEECCCc-ccccchhhhhcCCCC----eEEEEEcCcHHHHHHcCC
Confidence 699999999999988876511 1247999999885 333344444344433 799999987653 1334
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++|+++.-.. |..+.....+..+.+.|+|||++++-+
T Consensus 68 ~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 68 GPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 68999988652 334556677899999999999998744
No 217
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=8.9e-07 Score=57.37 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=68.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHH------HHhhhccCCCCCCCceeEEeccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE------QRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
++|+|+-.|.|++++.+...+. +...|+++-..+......+ ......... +.+.+..+.
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vg----------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-----N~e~~~~~~ 114 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVG----------PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-----NVEVIGKPL 114 (238)
T ss_pred CEEEEEecCCccHhhhhchhcC----------CceeEEEecchhhcccccchhhhhhhhhhhhhhh-----hhhhhCCcc
Confidence 5799999999999999999886 4567888776554221111 111111111 333333333
Q ss_pred ccCCCCCCCeeEEEEcccccccc-------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 75 EELPIESDSYSAYTIAFGIRNVT-------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 75 ~~~~~~~~~~D~i~~~~~l~~~~-------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
..+. ..+..|+++....-|.+. ...+...++.+.|||||++++.||....
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 3332 345567666644333322 4578889999999999999999987654
No 218
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.49 E-value=9.6e-07 Score=61.40 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=58.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.++|.-+|.|..+..+++.++ ..+++++|.++.++..+++++.... .++.++..++.++.
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~-----------~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLG-----------TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHL 85 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHH
Confidence 478999999999999998865 4789999999999999999876542 27888888877653
Q ss_pred --CCCCCeeEEEEccccc
Q psy890 79 --IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~ 94 (131)
....++|.|++..++.
T Consensus 86 ~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVS 103 (305)
T ss_pred HhcCCCcccEEEEeccCC
Confidence 1234678887655543
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=4e-06 Score=59.66 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=79.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCC----------------------------CCCCCeEEEEeCCHHHHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS----------------------------EHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~----------------------------~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
.++|.-||+|.+.+..+....+.+++... ..+...++|+|+++.+++.|+.|
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~N 273 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKAN 273 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHH
Confidence 47899999999988887765433321110 00111488999999999999999
Q ss_pred hhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccc--cccccC--H----HHHHHHHHHhccCCcEEEEEe
Q psy890 54 ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTR--I----DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~--l~~~~~--~----~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....++.+ .++|...|+..+..+.+.+|+||++-. ..--.. . ..+...+++.++.-++.+++.
T Consensus 274 A~~AGv~d----~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 274 ARAAGVGD----LIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCCc----eEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999987 899999999988644478999999633 322221 1 233344556666667776653
No 220
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=3.1e-06 Score=54.75 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=76.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
.+||+-+|||.++...+.. ...+++.+|.+...+...+++....+... +++.+..|.... ..
T Consensus 46 ~~LDlFAGSGaLGlEAlSR------------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~----~~~~~~~da~~~L~~~ 109 (187)
T COG0742 46 RVLDLFAGSGALGLEALSR------------GAARVVFVEKDRKAVKILKENLKALGLEG----EARVLRNDALRALKQL 109 (187)
T ss_pred EEEEecCCccHhHHHHHhC------------CCceEEEEecCHHHHHHHHHHHHHhCCcc----ceEEEeecHHHHHHhc
Confidence 5899999999999888776 46789999999999999999998877654 788888887643 11
Q ss_pred C-CCCeeEEEEccccc-cccCHHHHHHH--HHHhccCCcEEEEEeccC
Q psy890 80 E-SDSYSAYTIAFGIR-NVTRIDKALSE--AYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~-~~~~~~~~l~~--~~~~L~p~G~l~~~~~~~ 123 (131)
. .++||+|+.--..+ .+-+....+.. -..+|+|+|.+++ |+..
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~-E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV-EHDK 156 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE-EeCC
Confidence 2 23599999955444 22233333333 4577999999866 5443
No 221
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.47 E-value=1.3e-06 Score=61.14 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|+|.+||+|.+...+.+.+...... .....++|+|+++.++..++.++.-.+... ....+...|....+ ..
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~----~~~~~i~G~ei~~~~~~la~~nl~l~~~~~---~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNK----IKEINIYGIEIDPEAVALAKLNLLLHGIDN---SNINIIQGDSLENDKFI 121 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHH----HCCEEEEEEES-HHHHHHHHHHHHHTTHHC---BGCEEEES-TTTSHSCT
T ss_pred eeechhhhHHHHHHHHHHhhcccccc----cccceeEeecCcHHHHHHHHhhhhhhcccc---ccccccccccccccccc
Confidence 58999999999988887754100000 025789999999999999887765443221 12456667744333 22
Q ss_pred -CCCeeEEEEccccccc--c------------------C-HHHHHHHHHHhccCCcEEEEE
Q psy890 81 -SDSYSAYTIAFGIRNV--T------------------R-IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~--~------------------~-~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|+++-.+... . + -..++..+.+.|+++|++.++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 4689999996443222 1 0 125789999999999997654
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.45 E-value=3.1e-07 Score=59.40 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++||+||++|.|+..+++... ...+++++|+.+. .. . +.+.++..|+.+..
T Consensus 26 ~vlDlG~aPGGws~~~~~~~~----------~~~~v~avDl~~~---------~~--~-----~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 26 TVLDLGAAPGGWSQVLLQRGG----------PAGRVVAVDLGPM---------DP--L-----QNVSFIQGDITNPENIK 79 (181)
T ss_dssp EEEEET-TTSHHHHHHHTSTT----------TEEEEEEEESSST---------GS--------TTEEBTTGGGEEEEHSH
T ss_pred EEEEcCCcccceeeeeeeccc----------ccceEEEEecccc---------cc--c-----cceeeeecccchhhHHH
Confidence 689999999999999988852 2579999999874 00 0 14555555544321
Q ss_pred -----C--CCCCeeEEEEcccccccc-----------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----I--ESDSYSAYTIAFGIRNVT-----------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----~--~~~~~D~i~~~~~l~~~~-----------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. ....+|+|++-....... -....+.-+.+.|+|||.+++--+..
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1 126899999976322211 12344556667899999888765554
No 223
>KOG3987|consensus
Probab=98.45 E-value=2.9e-08 Score=64.82 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=68.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|+|.|..+..++... .++++.+.|..|..+.++.-- + .....++.-.+
T Consensus 115 ~lLDlGAGdGeit~~m~p~f-------------eevyATElS~tMr~rL~kk~y----------n----Vl~~~ew~~t~ 167 (288)
T KOG3987|consen 115 TLLDLGAGDGEITLRMAPTF-------------EEVYATELSWTMRDRLKKKNY----------N----VLTEIEWLQTD 167 (288)
T ss_pred eEEeccCCCcchhhhhcchH-------------HHHHHHHhhHHHHHHHhhcCC----------c----eeeehhhhhcC
Confidence 58999999999998887764 469999999999887764311 1 11222222223
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccC-CcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-~G~l~~ 118 (131)
-+||+|.|.+.+.-.-++-+.|+.+...|+| +|++++
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 3599999999988788899999999999999 898765
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.39 E-value=4.8e-06 Score=57.04 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=62.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|+|+|.+|..+++. ..+++++|+++.++...++++.... +++++..|+.++....
T Consensus 33 ~VlEiGpG~G~lT~~L~~~-------------~~~v~~vE~d~~~~~~L~~~~~~~~-------~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 33 TVLEIGPGPGALTRELLKR-------------GKRVIAVEIDPDLAKHLKERFASNP-------NVEVINGDFLKWDLYD 92 (262)
T ss_dssp EEEEESSTTSCCHHHHHHH-------------SSEEEEEESSHHHHHHHHHHCTTCS-------SEEEEES-TTTSCGGG
T ss_pred EEEEeCCCCccchhhHhcc-------------cCcceeecCcHhHHHHHHHHhhhcc-------cceeeecchhccccHH
Confidence 6899999999999999887 4789999999999999998877433 8999999998876443
Q ss_pred ---CCeeEEEEccccccccCHHHHHHHHHHh
Q psy890 82 ---DSYSAYTIAFGIRNVTRIDKALSEAYRV 109 (131)
Q Consensus 82 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~ 109 (131)
.....|+.+... .--..++.++...
T Consensus 93 ~~~~~~~~vv~NlPy---~is~~il~~ll~~ 120 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY---NISSPILRKLLEL 120 (262)
T ss_dssp HCSSSEEEEEEEETG---TGHHHHHHHHHHH
T ss_pred hhcCCceEEEEEecc---cchHHHHHHHhhc
Confidence 345566665332 1223455555553
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.39 E-value=1.2e-05 Score=53.40 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+||-+|+.+|.....+....+ +...|++++.|+..........+... |+--+..|+....
T Consensus 75 skVLYLGAasGTTVSHvSDIvg----------~~G~VYaVEfs~r~~rdL~~la~~R~-------NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVG----------PDGVVYAVEFSPRSMRDLLNLAKKRP-------NIIPILEDARHPEKY 137 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHST-------TEEEEES-TTSGGGG
T ss_pred CEEEEecccCCCccchhhhccC----------CCCcEEEEEecchhHHHHHHHhccCC-------ceeeeeccCCChHHh
Confidence 3689999999999999999886 47799999999988777766666554 8888888877542
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.--+..|+|++--. .-.+..-++.++...||+||.+++.
T Consensus 138 ~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 11247999987532 2234455677788899999998875
No 226
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.7e-05 Score=56.62 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=81.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
..|||+.+++|.=|..+++...+ .+..|+++|.++.-+...++++...+.. ++..+..|....+
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~---------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~ 223 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMEN---------EGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAEL 223 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCC---------CCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEeccccccccc
Confidence 36899999999999999988752 2355799999999999999999988865 6777777766543
Q ss_pred -CCCCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -IESDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...++||.|++-..+... ++ -.++|....++|||||+++...++.
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 222359999874333211 11 1577889999999999998876664
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=7.8e-06 Score=53.67 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=69.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+.|+|+|+.+|.|+..+++.+. ...+++++|+.+ +... +.+.++..|+..-+
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~----------~~~~ivavDi~p---------~~~~-------~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLG----------AGGKIVAVDILP---------MKPI-------PGVIFLQGDITDEDTL 100 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhC----------CCCcEEEEECcc---------cccC-------CCceEEeeeccCccHH
Confidence 5799999999999999999876 356699999966 1111 16888999877643
Q ss_pred ------CCCCCeeEEEEcccc-----cccc-----C-HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 ------IESDSYSAYTIAFGI-----RNVT-----R-IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l-----~~~~-----~-~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+...++|+|++-..- .... . -...+.-+...|+|||.+++-.+....
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 334568999974332 1111 1 135566677899999999886655443
No 228
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.3e-06 Score=60.93 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+++|+-||.|.++..+++. ..+|+|+|+++++++.|+++.+.++.. |++|...+.+++...
T Consensus 296 ~vlDlYCGvG~f~l~lA~~-------------~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKR-------------VKKVHGVEISPEAVEAAQENAAANGID-----NVEFIAGDAEEFTPAW 357 (432)
T ss_pred EEEEeccCCChhhhhhccc-------------CCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHHhhhc
Confidence 6899999999999999865 679999999999999999999998876 799999998887422
Q ss_pred --CCCeeEEEE
Q psy890 81 --SDSYSAYTI 89 (131)
Q Consensus 81 --~~~~D~i~~ 89 (131)
...+|.|+.
T Consensus 358 ~~~~~~d~Vvv 368 (432)
T COG2265 358 WEGYKPDVVVV 368 (432)
T ss_pred cccCCCCEEEE
Confidence 346899987
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=2.4e-06 Score=56.38 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=62.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-------hccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-------DLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~ 74 (131)
+++|+|||.|.....++...+ ..+.+|+++.+.....++...+ ..+... .++.+..+|+
T Consensus 45 vF~DlGSG~G~~v~~aal~~~-----------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~---~~v~l~~gdf 110 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTG-----------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP---GKVELIHGDF 110 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH-------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEEEECS-T
T ss_pred EEEECCCCCCHHHHHHHHHcC-----------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc---ccceeeccCc
Confidence 579999999999887776653 5679999999988877755332 222221 2677888887
Q ss_pred ccCCCC---CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 75 EELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 75 ~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++. -...|+|++++.+ .-++....|.+....||+|.+++-
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 654311 1347999998753 334566777888888999988765
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.34 E-value=2e-06 Score=56.65 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=42.6
Q ss_pred eEEecccccCCCC---CCCeeEEEEccccccccCH---HHHHHHHHHhccCCcE-----EEEE
Q psy890 68 RFLEANAEELPIE---SDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGR-----FLCL 119 (131)
Q Consensus 68 ~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~-----l~~~ 119 (131)
.+...|+.+.|.+ .+.||+|.++.++..+|++ -..+.++.+.|+|+|. ++++
T Consensus 86 ~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 86 GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 4566787777653 5689999999999999864 5779999999999999 7765
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.32 E-value=3.1e-06 Score=52.52 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=45.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
+++|+|||.|..+..+++..+ ..+++++|+++.++..++++++..+.. ++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-----------~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-----------EGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-----------CCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeeee
Confidence 589999999999998887643 458999999999999999998766543 4555554433
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.30 E-value=1.2e-05 Score=60.24 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=54.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||.+||+|.+...+++.+....... .....++++|+++..+..++.++...... ...+...|.....
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~~---~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYFK---EVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCcc---cceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 699999999999999988764211000 01368999999999999999887654311 2333433322111
Q ss_pred --CCCCCeeEEEEccc
Q psy890 79 --IESDSYSAYTIAFG 92 (131)
Q Consensus 79 --~~~~~~D~i~~~~~ 92 (131)
...+.||+|+.+-.
T Consensus 106 ~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 106 IESYLDLFDIVITNPP 121 (524)
T ss_pred cccccCcccEEEeCCC
Confidence 11257999999644
No 233
>KOG2730|consensus
Probab=98.27 E-value=1.4e-06 Score=57.50 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=70.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+|.-||.|..++..+.. +..|+++|+++.-+..|+.+.+..+.++ ++.|+++|+.++.
T Consensus 97 ~iidaf~g~gGntiqfa~~-------------~~~VisIdiDPikIa~AkhNaeiYGI~~----rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQ-------------GPYVIAIDIDPVKIACARHNAEVYGVPD----RITFICGDFLDLASKL 159 (263)
T ss_pred hhhhhhhcCCchHHHHHHh-------------CCeEEEEeccHHHHHHHhccceeecCCc----eeEEEechHHHHHHHH
Confidence 4678888888888888776 5689999999999999999999999986 9999999977652
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+....+|+|+.+..+....-....+-.+..+++|.
T Consensus 160 q~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 160 KADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred hhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchh
Confidence 33455788887666554443333344444444444
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=1.1e-05 Score=53.55 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=71.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++|||+|.|-=+.-++-..+ ..+++-+|...--+...++.....+++ +++++...+++.....
T Consensus 70 ~~~DIGSGaGfPGipLAI~~p-----------~~~vtLles~~Kk~~FL~~~~~eL~L~-----nv~i~~~RaE~~~~~~ 133 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAFP-----------DLKVTLLESLGKKIAFLREVKKELGLE-----NVEIVHGRAEEFGQEK 133 (215)
T ss_pred EEEEeCCCCCCchhhHHHhcc-----------CCcEEEEccCchHHHHHHHHHHHhCCC-----CeEEehhhHhhccccc
Confidence 689999999988887764433 667999998886666666666666665 7999999988864221
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..||+|.+.. +.++.....-+...+++||.+++
T Consensus 134 ~~~D~vtsRA----va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 134 KQYDVVTSRA----VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ccCcEEEeeh----ccchHHHHHHHHHhcccCCcchh
Confidence 1199998754 33455666778888999888754
No 235
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.24 E-value=1.8e-05 Score=53.99 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=66.5
Q ss_pred eeeeeccc--chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 3 ILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 3 iLdig~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.||+|||- -.+.-.+++... +..+|+.+|.++-.+..++..+....-. ++.++.+|+.+..
T Consensus 72 FLDlGsGlPT~~nvHevAq~~~----------P~aRVVYVD~DPvv~ah~ralL~~~~~g-----~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 72 FLDLGSGLPTAGNVHEVAQRVA----------PDARVVYVDNDPVVLAHARALLADNPRG-----RTAYVQADLRDPEAI 136 (267)
T ss_dssp EEEET--S--SS-HHHHHHHH-----------TT-EEEEEESSHHHHHCCHHHHTT-TTS-----EEEEEE--TT-HHHH
T ss_pred EEEcccCCCCCCCHhHHHHhhC----------CCceEEEECCCchHHHHHHhhhcCCCCc-----cEEEEeCCCCCHHHH
Confidence 69999983 234555656554 5899999999999999998887765410 3889999987642
Q ss_pred ---------CCCCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 ---------IESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ---------~~~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+.-+.-=.+++..++|+++ ++..++..++..|.||+++.+...+..
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1111222455667788886 578999999999999999998766543
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=7e-06 Score=53.32 Aligned_cols=101 Identities=17% Similarity=0.037 Sum_probs=74.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|+|+|-.++..++. ...+++..|+.+.......-+.+.+++ .+.+...|... ++
T Consensus 82 rVLd~gagsgLvaIAaa~a------------GA~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~ 140 (218)
T COG3897 82 RVLDLGAGSGLVAIAAARA------------GAAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SP 140 (218)
T ss_pred eeeecccccChHHHHHHHh------------hhHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CC
Confidence 6899999999888877665 357899999998777777777777663 57777777554 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCc-EEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G-~l~~~~~~~~ 124 (131)
..+|+++..-.+.+-+.-++.+. +...++..| .+++-+.+++
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 67999999988887777777777 555555555 4555565554
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.22 E-value=5.4e-06 Score=59.08 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=46.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.+||+-||.|.++..++.. ..+|+|+|.++++++.|+++...++.. +++|+..+.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-------------~~~V~gvE~~~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-------------AKKVIGVEIVEEAVEDARENAKLNGID-----NVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-------------SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-------------CCeEEEeeCCHHHHHHHHHHHHHcCCC-----cceEEEeeccch
Confidence 4899999999999999886 568999999999999999999988876 899998776543
No 238
>KOG2352|consensus
Probab=98.21 E-value=2.4e-05 Score=57.13 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=81.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++|.+|||.-.++..+.+. +...++.+|+|+-.+.....+..... +..++...|...+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~------------G~~dI~~iD~S~V~V~~m~~~~~~~~------~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN------------GFEDITNIDSSSVVVAAMQVRNAKER------PEMQMVEMDMDQLVFE 111 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc------------CCCCceeccccHHHHHHHHhccccCC------cceEEEEecchhccCC
Confidence 47899999998777766654 35679999999988888776654211 2789999999999999
Q ss_pred CCCeeEEEEcccccccc----------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVT----------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~----------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+++||+|+.-..++.+- .....+.++.+.++++|+++.+.+
T Consensus 112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999999988876653 124557889999999999887766
No 239
>KOG1331|consensus
Probab=98.20 E-value=2.1e-06 Score=58.56 Aligned_cols=96 Identities=24% Similarity=0.224 Sum_probs=72.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|+|||.|.... .. +...+.++|.+...+..+++. + ......+|+.+.|+..
T Consensus 48 v~~d~gCGngky~~-----~~----------p~~~~ig~D~c~~l~~~ak~~----~-------~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLG-----VN----------PLCLIIGCDLCTGLLGGAKRS----G-------GDNVCRADALKLPFRE 101 (293)
T ss_pred eeeecccCCcccCc-----CC----------CcceeeecchhhhhccccccC----C-------CceeehhhhhcCCCCC
Confidence 57999999985421 00 245789999888666655422 1 2256778999999999
Q ss_pred CCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||.+++..++||+. -...+++++.+.++|||..++.-+..
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999999999986 35789999999999999977765544
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=53.73 Aligned_cols=96 Identities=7% Similarity=-0.004 Sum_probs=72.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+..|+|+|+|-++...+.+ ..+|++++.++-....+.+++...+.. +++.+..|+....+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-------------A~rViAiE~dPk~a~~a~eN~~v~g~~-----n~evv~gDA~~y~f-- 94 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-------------AERVIAIEKDPKRARLAEENLHVPGDV-----NWEVVVGDARDYDF-- 94 (252)
T ss_pred ceeeccCCcchHHHHHHhh-------------hceEEEEecCcHHHHHhhhcCCCCCCc-----ceEEEecccccccc--
Confidence 4679999999998877766 458999999999999999998666644 89999999888766
Q ss_pred CCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+..|+|+|-+.=..+ ......+..+.+.|+..+.++
T Consensus 95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 568999885432111 233456777777888777664
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.19 E-value=2.2e-05 Score=55.74 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH--h---hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR--A---RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+|-+|.|.|-..+++++.-+ ..+++-+|.++.|++.++.+ . ......+ ++++.+..|+.+
T Consensus 292 ~vLvlGGGDGLAlRellkyP~-----------~~qI~lVdLDP~miela~~~~vlr~~N~~sf~d---pRv~Vv~dDAf~ 357 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYPQ-----------VEQITLVDLDPRMIELASHATVLRALNQGSFSD---PRVTVVNDDAFQ 357 (508)
T ss_pred eEEEEcCCchHHHHHHHhCCC-----------cceEEEEecCHHHHHHhhhhhHhhhhccCCccC---CeeEEEeccHHH
Confidence 478899999999888888732 67899999999999999833 2 2334444 489999999877
Q ss_pred CC-CCCCCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEE
Q psy890 77 LP-IESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 77 ~~-~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~ 118 (131)
+- -..+.||.||....=.+.+. -..+...+.+.|+++|.+++
T Consensus 358 wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 358 WLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred HHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 63 23458999998543222221 25677888999999999876
No 242
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.18 E-value=1.4e-05 Score=55.30 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=80.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||+++++|.-+..++.... ...++++.|++..-+...+++....+.. ++.....|..... .
T Consensus 88 ~VLD~CAapGgKt~~la~~~~----------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-----~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMG----------NKGEIVANDISPKRLKRLKENLKRLGVF-----NVIVINADARKLDPKK 152 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTT----------TTSEEEEEESSHHHHHHHHHHHHHTT-S-----SEEEEESHHHHHHHHH
T ss_pred cccccccCCCCceeeeeeccc----------chhHHHHhccCHHHHHHHHHHHHhcCCc-----eEEEEeeccccccccc
Confidence 589999999999999988875 3679999999999999999999887765 6777767766542 2
Q ss_pred CCCCeeEEEEccccccc------cC----------------HHHHHHHHHHhc----cCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVL----KPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L----~p~G~l~~~~~~ 122 (131)
....||.|++-...... ++ -.+.|..+.+.+ +|||+++...++
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 23469999984332211 11 157789999999 999999876555
No 243
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=98.17 E-value=2.2e-05 Score=56.34 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=70.9
Q ss_pred CceeeeecccchhhHHHhhhh----cCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC----CC-----CCCCc-
Q psy890 1 MYILFYLVFPGDIAFRFLNYV----DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK----VP-----VPNPR- 66 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~----~~-----~~~~~- 66 (131)
++|+|+|||+|.++..+...+ .+.........+..++..-|...+-....-+.+..... .+ .....
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~ 144 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSY 144 (386)
T ss_pred eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCce
Confidence 369999999998876654432 21111111112457888888766555544444332100 00 00001
Q ss_pred -eeEEecccccCCCCCCCeeEEEEccccccccC--------------------------------------HHHHHHHHH
Q psy890 67 -LRFLEANAEELPIESDSYSAYTIAFGIRNVTR--------------------------------------IDKALSEAY 107 (131)
Q Consensus 67 -~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~ 107 (131)
+..+.+++-.--++.++.+++++++.+||++. ...+|..=.
T Consensus 145 f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra 224 (386)
T PLN02668 145 FAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARA 224 (386)
T ss_pred EEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223344333478899999999999999863 122333344
Q ss_pred HhccCCcEEEEEeccCCC
Q psy890 108 RVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 108 ~~L~p~G~l~~~~~~~~~ 125 (131)
+-|.|||++++.-.+++.
T Consensus 225 ~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 225 QEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHhccCcEEEEEEecCCC
Confidence 568899999988766643
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=2e-05 Score=54.42 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=49.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
..+|.--|.|..+..+++.++ ...+++++|.++.++..++++..... .++.++..++.++
T Consensus 26 iyiD~TlG~GGHS~~iL~~l~----------~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F~~l 85 (314)
T COG0275 26 IYIDGTLGAGGHSRAILEKLP----------DLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNFANL 85 (314)
T ss_pred EEEEecCCCcHhHHHHHHhCC----------CCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcHHHH
Confidence 357888899999999999986 46789999999999999999887644 2788888876654
No 245
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.06 E-value=2.8e-05 Score=52.97 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=64.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-------------CCCC-----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-------------VPVP----- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-------------~~~~----- 63 (131)
++||||||+--.. ++...+ -..+++..|.++.-++..++-++..+. +...
T Consensus 59 ~llDiGsGPtiy~--~lsa~~----------~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e 126 (256)
T PF01234_consen 59 TLLDIGSGPTIYQ--LLSACE----------WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEE 126 (256)
T ss_dssp EEEEES-TT--GG--GTTGGG----------TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHH
T ss_pred EEEEeCCCcHHHh--hhhHHH----------hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhh
Confidence 5799999984332 222211 246799999998777654442222100 0000
Q ss_pred -----CCce-eEEecccccCC-CCC-----CCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 64 -----NPRL-RFLEANAEELP-IES-----DSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 64 -----~~~~-~~~~~d~~~~~-~~~-----~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...+ +++..|..+.+ +.. ..||+|++.+++.... ...+++.++.++|||||.|+++..-.
T Consensus 127 ~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 127 KEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0113 35667766643 322 3599999999986553 45688999999999999999876544
No 246
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.04 E-value=8.7e-05 Score=49.09 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=53.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIES 81 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~ 81 (131)
+.||||.=|.++..+++.-. ..+++++|+++.-++.|++++...++.+ ++.+..+|- ..++ +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-----------~~~~ia~DI~~gpL~~A~~~i~~~~l~~----~i~~rlgdGL~~l~-~~ 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-----------APKAIAVDINPGPLEKAKENIAKYGLED----RIEVRLGDGLEVLK-PG 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-----------EEEEEEEESSHHHHHHHHHHHHHTT-TT----TEEEEE-SGGGG---GG
T ss_pred CceeccchhHHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCcc----cEEEEECCcccccC-CC
Confidence 57999999999999988743 5689999999999999999999988876 899999984 4332 22
Q ss_pred CCeeEEEEcc
Q psy890 82 DSYSAYTIAF 91 (131)
Q Consensus 82 ~~~D~i~~~~ 91 (131)
+..|.|+...
T Consensus 65 e~~d~ivIAG 74 (205)
T PF04816_consen 65 EDVDTIVIAG 74 (205)
T ss_dssp G---EEEEEE
T ss_pred CCCCEEEEec
Confidence 3367777644
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.99 E-value=0.00012 Score=45.54 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=55.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 79 (131)
.|+|+|||.|+++..++..+.+.. ...+++++|.++..++.+.++..... +.. ++.+...+.....
T Consensus 28 ~vvD~GsG~GyLs~~La~~l~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~- 95 (141)
T PF13679_consen 28 TVVDLGSGKGYLSRALAHLLCNSS-------PNLRVLGIDCNESLVESAQKRAQKLGSDLEK----RLSFIQGDIADES- 95 (141)
T ss_pred EEEEeCCChhHHHHHHHHHHHhcC-------CCCeEEEEECCcHHHHHHHHHHHHhcchhhc----cchhhccchhhhc-
Confidence 689999999999999988554221 36899999999999999988877654 221 4555555544321
Q ss_pred CCCCeeEEEEccccc
Q psy890 80 ESDSYSAYTIAFGIR 94 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~ 94 (131)
.....++++..+...
T Consensus 96 ~~~~~~~~vgLHaCG 110 (141)
T PF13679_consen 96 SSDPPDILVGLHACG 110 (141)
T ss_pred ccCCCeEEEEeeccc
Confidence 134567776644433
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.99 E-value=1.4e-05 Score=55.71 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=53.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
..+|.--|.|-.+..+++.++ ..+++++|.+++++..+++++.... .++.++..++.++.
T Consensus 23 ~~vD~T~G~GGHS~aiL~~~~-----------~~~li~~DrD~~a~~~a~~~l~~~~------~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 23 IYVDCTFGGGGHSKAILEKLP-----------NGRLIGIDRDPEALERAKERLKKFD------DRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-----------T-EEEEEES-HHHHHHHHCCTCCCC------TTEEEEES-GGGHHHHH
T ss_pred eEEeecCCcHHHHHHHHHhCC-----------CCeEEEecCCHHHHHHHHHHHhhcc------ceEEEEeccHHHHHHHH
Confidence 468888899999999999886 5899999999999999998877542 38999999888763
Q ss_pred --C-CCCCeeEEEEcccc
Q psy890 79 --I-ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --~-~~~~~D~i~~~~~l 93 (131)
. ....+|-|+.-.++
T Consensus 86 ~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHTTTTS-EEEEEEE-S-
T ss_pred HHccCCCccCEEEEcccc
Confidence 2 33578888765444
No 249
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.95 E-value=3.9e-05 Score=54.37 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=65.9
Q ss_pred CceeeeecccchhhHHHhhhhc----CCC-CCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc----CCCCCCCc--eeE
Q psy890 1 MYILFYLVFPGDIAFRFLNYVD----KLP-PNTLSEHCAPHVTVADINRAMLDVGEQRARDLF----KVPVPNPR--LRF 69 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~----~~~-~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~----~~~~~~~~--~~~ 69 (131)
++|+|+||.+|..+..+...+- ... ..+....+..+++.-|.-.+-....-+.+.... .. .+ +..
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~----~~~f~~g 93 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF----RNYFVSG 93 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT----TSEEEEE
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC----ceEEEEe
Confidence 4799999999999887765431 110 000111245789999976655554433333220 00 03 334
Q ss_pred EecccccCCCCCCCeeEEEEccccccccC---------------------------------------HHHHHHHHHHhc
Q psy890 70 LEANAEELPIESDSYSAYTIAFGIRNVTR---------------------------------------IDKALSEAYRVL 110 (131)
Q Consensus 70 ~~~d~~~~~~~~~~~D~i~~~~~l~~~~~---------------------------------------~~~~l~~~~~~L 110 (131)
+.+++-.--++.++.|++++++.+||++. +..+|..=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45666554588899999999999998852 123444444668
Q ss_pred cCCcEEEEEeccCCC
Q psy890 111 KPGGRFLCLEFSHVN 125 (131)
Q Consensus 111 ~p~G~l~~~~~~~~~ 125 (131)
+|||++++.-.++..
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999988777665
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.91 E-value=9.7e-05 Score=52.18 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=52.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||+||++|.|+..+++. +.+|+++|..+ +- ..+... +++.....|.......
T Consensus 213 ~~vlDLGAsPGGWT~~L~~r-------------G~~V~AVD~g~-l~----~~L~~~-------~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRR-------------GMFVTAVDNGP-MA----QSLMDT-------GQVEHLRADGFKFRPP 267 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHc-------------CCEEEEEechh-cC----HhhhCC-------CCEEEEeccCcccCCC
Confidence 57899999999999999886 56999999544 21 112222 2788887775554222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
.+.+|.++|-... .+.+....+.+++.
T Consensus 268 ~~~vDwvVcDmve----~P~rva~lm~~Wl~ 294 (357)
T PRK11760 268 RKNVDWLVCDMVE----KPARVAELMAQWLV 294 (357)
T ss_pred CCCCCEEEEeccc----CHHHHHHHHHHHHh
Confidence 5678999875432 23344444444443
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00027 Score=46.37 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=71.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.||-+|+.+|.....+..-.+ ...+++++.|+..........+... |+--+..|+....
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~-----------~G~iYaVEfs~R~~reLl~~a~~R~-------Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVG-----------EGRIYAVEFSPRPMRELLDVAEKRP-------NIIPILEDARKPEKYR 140 (231)
T ss_pred EEEEeeccCCCcHhHHHhccC-----------CCcEEEEEecchhHHHHHHHHHhCC-------CceeeecccCCcHHhh
Confidence 589999999999998888765 5789999999988888777776655 7888888876532
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.--+..|+|+.--. .-.+..-+..++...|+++|+++++
T Consensus 141 ~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 141 HLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred hhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence 11245788876321 1223344567778889999987764
No 252
>KOG1122|consensus
Probab=97.84 E-value=0.0004 Score=50.14 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=80.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+.+.+|.-+..++.... ....+++.|.+.+-+...+.++...++. +......|..++|
T Consensus 244 RIlDmcAAPGGKTt~IAalMk----------n~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMK----------NTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKE 308 (460)
T ss_pred eecchhcCCCchHHHHHHHHc----------CCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccc
Confidence 699999999988888877765 3678999999999999999999988865 6777777776665
Q ss_pred CCCCCeeEEEEcccccc------------cc---------C-HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRN------------VT---------R-IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~------------~~---------~-~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++. +||.|..-..+.. .. . -.+.|.+....+++||+|+-..++-
T Consensus 309 ~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 309 FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 444 8999987444332 11 0 1466778888999999998765553
No 253
>KOG3201|consensus
Probab=97.82 E-value=3.5e-05 Score=48.77 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=67.9
Q ss_pred ceeeeecccchh-hHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 2 YILFYLVFPGDI-AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.|||+|.|--.+ +.+++.+.+ ...|+..|-++..+...++....+....- .++.....+.... .
T Consensus 32 ~ilelgggft~laglmia~~a~-----------~~~v~ltdgne~svrnv~ki~~~n~~s~~--tsc~vlrw~~~~aqsq 98 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAP-----------DSSVWLTDGNEESVRNVEKIRNSNMASSL--TSCCVLRWLIWGAQSQ 98 (201)
T ss_pred HHHHhcCchhhhhhhheeeecC-----------CceEEEecCCHHHHHHHHHHHhccccccc--ceehhhHHHHhhhHHH
Confidence 478999884444 454554443 67899999999999888776654321100 0222222222221 1
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....||+|++.-++-.-......+..+.++|+|.|.-++..
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 234689999998776544556777888999999999966643
No 254
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.77 E-value=0.00032 Score=48.87 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=47.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEeccccc-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEE-L-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~-~-- 77 (131)
+.||||+|...+--.|..... +-+++++|+++..++.|+++++.+ .+.. +++++...-.. +
T Consensus 105 ~glDIGTGAscIYpLLg~~~~-----------~W~fvaTdID~~sl~~A~~nv~~N~~L~~----~I~l~~~~~~~~i~~ 169 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLY-----------GWSFVATDIDPKSLESARENVERNPNLES----RIELRKQKNPDNIFD 169 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH-------------EEEEEES-HHHHHHHHHHHHHT-T-TT----TEEEEE--ST-SSTT
T ss_pred EeecCCccHHHHHHHHhhhhc-----------CCeEEEecCCHHHHHHHHHHHHhcccccc----ceEEEEcCCccccch
Confidence 579999998766444433332 578999999999999999999988 6664 78887554221 1
Q ss_pred --CCCCCCeeEEEEcccccccc
Q psy890 78 --PIESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~ 97 (131)
....+.||..+|+-.++...
T Consensus 170 ~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 170 GIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TSTT--S-EEEEEE-----SS-
T ss_pred hhhcccceeeEEecCCccccCh
Confidence 12346899999987776543
No 255
>KOG4589|consensus
Probab=97.76 E-value=0.00019 Score=46.52 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-ccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~- 78 (131)
.+|||+||.+|.|+.-..+..+ +...+.++|+-. +.... -+.++.+ |+.+..
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~----------p~g~v~gVDllh---------~~p~~-------Ga~~i~~~dvtdp~~ 124 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVN----------PNGMVLGVDLLH---------IEPPE-------GATIIQGNDVTDPET 124 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhC----------CCceEEEEeeee---------ccCCC-------CcccccccccCCHHH
Confidence 3799999999999998888765 478899999733 11111 3444444 554421
Q ss_pred -------CCCCCeeEEEEccccccc--c--CH-------HHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 79 -------IESDSYSAYTIAFGIRNV--T--RI-------DKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l~~~--~--~~-------~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.+....|+|++-+.-... . |- ..++.-....++|+|.+++--+.+.+.
T Consensus 125 ~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 125 YRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred HHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 456678999885432111 1 21 223344456778999998876665544
No 256
>KOG1709|consensus
Probab=97.70 E-value=0.00041 Score=46.02 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=71.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+||++|-|-|-....+-++ +..+-+.++..++.+++.++.-.... .++....+--++. .+
T Consensus 104 rvLnVGFGMgIidT~iQe~------------~p~~H~IiE~hp~V~krmr~~gw~ek------~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEA------------PPDEHWIIEAHPDVLKRMRDWGWREK------ENVIILEGRWEDVLNTL 165 (271)
T ss_pred eEEEeccchHHHHHHHhhc------------CCcceEEEecCHHHHHHHHhcccccc------cceEEEecchHhhhccc
Confidence 6899999998766655444 24678899999999988876533221 2677766655543 25
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+++.||-|.--..-....+...+.+.+.++|||+|++-+.
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 6778999977554445567777788999999999998764
No 257
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00019 Score=50.85 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=66.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 79 (131)
.|||+|.|+|.-..++-..+++ -..++.++.|+..-+...........+ ...+...|+.. +++
T Consensus 116 siLDvG~GPgtgl~A~n~i~Pd----------l~sa~ile~sp~lrkV~~tl~~nv~t~-----~td~r~s~vt~dRl~l 180 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWPD----------LKSAVILEASPALRKVGDTLAENVSTE-----KTDWRASDVTEDRLSL 180 (484)
T ss_pred hhhccCCCCchhhhhhcccCCC----------chhhhhhccCHHHHHHHHHHHhhcccc-----cCCCCCCccchhccCC
Confidence 5899999999876666555552 335667777775555444333322211 23333334332 223
Q ss_pred C-CCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 E-SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+ .+.|++++...-+-... .+...+..+-.++.|||.++++|.+.+.
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 2 34677777755543332 3445788899999999999999977654
No 258
>KOG2798|consensus
Probab=97.55 E-value=0.00046 Score=48.16 Aligned_cols=36 Identities=31% Similarity=0.584 Sum_probs=32.9
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+.||+|+..+.+....+....+..+.+.|+|||+++
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 469999999998888899999999999999999976
No 259
>KOG0822|consensus
Probab=97.52 E-value=0.00027 Score=52.41 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=75.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+=+|+|-|-+....++...... ++.++++++.+++++...+. .....+.. +++++..|+..++-+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-------RkVklyavEKNPNAivtL~~-~n~~~W~~----~Vtii~~DMR~w~ap~ 437 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETD-------RKVKLYAVEKNPNAIVTLQN-RNFECWDN----RVTIISSDMRKWNAPR 437 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhc-------CceEEEEEecCcchhhhhhh-hchhhhcC----eeEEEeccccccCCch
Confidence 467789999988777666543222 47899999999999888776 44445553 8999999999997555
Q ss_pred CCeeEEEEccccccccC---HHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p~G~l~~ 118 (131)
...|++++=. |..+.+ -..-|.-+.+.|||+|+.+=
T Consensus 438 eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 438 EQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 7899997632 222221 24678888999999988753
No 260
>KOG2187|consensus
Probab=97.52 E-value=9.4e-05 Score=54.45 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=50.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.++|+.||||.++..+++. ..+|+|++++++.+..|+++...++.+ +.+|+++-.++
T Consensus 386 ~llDv~CGTG~iglala~~-------------~~~ViGvEi~~~aV~dA~~nA~~Ngis-----Na~Fi~gqaE~ 442 (534)
T KOG2187|consen 386 TLLDVCCGTGTIGLALARG-------------VKRVIGVEISPDAVEDAEKNAQINGIS-----NATFIVGQAED 442 (534)
T ss_pred EEEEEeecCCceehhhhcc-------------ccceeeeecChhhcchhhhcchhcCcc-----ceeeeecchhh
Confidence 4799999999999988886 568999999999999999999988887 89999994444
No 261
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00088 Score=45.01 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=63.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-- 78 (131)
.+||+|+.||-++..+++. +..+|+++|....++..-.+.-+ ++ .+...++..+.
T Consensus 82 v~LDiGsSTGGFTd~lLq~------------gAk~VyavDVG~~Ql~~kLR~d~----------rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQR------------GAKHVYAVDVGYGQLHWKLRNDP----------RVIVLERTNVRYLTPE 139 (245)
T ss_pred EEEEecCCCccHHHHHHHc------------CCcEEEEEEccCCccCHhHhcCC----------cEEEEecCChhhCCHH
Confidence 5799999999999988886 46789999998866654332211 33 33344544432
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+. +..|++++--++- ....+|..+...++|++.++.
T Consensus 140 ~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred Hcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 22 2678888855433 567788889999999988765
No 262
>KOG2793|consensus
Probab=97.48 E-value=0.0016 Score=44.24 Aligned_cols=101 Identities=6% Similarity=-0.073 Sum_probs=62.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-----hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-----RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
+|||+|+|+|..+...+... ..++...|...-. ...+.+. ....+. ..+.....+-..
T Consensus 89 ~vlELGsGtglvG~~aa~~~------------~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g----~~v~v~~L~Wg~ 151 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLL------------GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLG----GSVIVAILVWGN 151 (248)
T ss_pred eEEEecCCccHHHHHHHHHh------------cceeccCCchhhH-HHHHHhhhhhhhhhhhcC----CceeEEEEecCC
Confidence 58999999997776666653 5788888865533 2222221 111111 033333333222
Q ss_pred C---CCCCCC-eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 L---PIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~---~~~~~~-~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. .+.... +|+|+++-++.........+.-++..|..++.+++.
T Consensus 152 ~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 152 ALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred cccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 2 122233 999999999988888888888888888888865553
No 263
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.41 E-value=0.0014 Score=47.33 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=73.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
++||.-+|+|-=++..+.++. ...+++.-|+|+++++..+++++.+++.+ ..++....|++.+ ...
T Consensus 52 ~~lDalaasGvR~iRy~~E~~----------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~~~ 118 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELA----------GVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLYSR 118 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-S----------SECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHCHS
T ss_pred eEEeccccccHHHHHHHHHcC----------CCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhhhc
Confidence 689999999988888888764 35789999999999999999998887764 1477778887664 224
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...||+|=. .-+-.+..+|..+.+.++.||++.++.
T Consensus 119 ~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 119 QERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp TT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 678999944 122356778999999999999998753
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.38 E-value=0.0017 Score=42.95 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|+|+|.-.|..+...+..+.... ...+|+++|++-..... +..+..... ++++++.+|..+..
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~-------~~~~VigiDIdir~~~~--~a~e~hp~~----~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLG-------GKGKVIGIDIDIRPHNR--KAIESHPMS----PRITFIQGDSIDPEIVD 101 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT----------EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHH
T ss_pred eEEEEecCCCchHHHHHHHHHHhC-------CCceEEEEeCCcchhch--HHHhhcccc----CceEEEECCCCCHHHHH
Confidence 689999988766665554432111 36799999996533322 222322222 28999999976542
Q ss_pred -CC----CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. .....+|+.- +-|...+..+.|.....++++|+++++-
T Consensus 102 ~v~~~~~~~~~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 102 QVRELASPPHPVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp TSGSS----SSEEEEES-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHhhccCCceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 11 1223344442 2344557778888899999999999773
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.32 E-value=0.00022 Score=52.51 Aligned_cols=96 Identities=16% Similarity=0.053 Sum_probs=60.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 80 (131)
+|+|..+|.|.++.++.+. .|+++..-+..-......+-..+ ..-...|..+ ++.=
T Consensus 368 NVMDMnAg~GGFAAAL~~~---------------~VWVMNVVP~~~~ntL~vIydRG--------LIG~yhDWCE~fsTY 424 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDD---------------PVWVMNVVPVSGPNTLPVIYDRG--------LIGVYHDWCEAFSTY 424 (506)
T ss_pred eeeeecccccHHHHHhccC---------------CceEEEecccCCCCcchhhhhcc--------cchhccchhhccCCC
Confidence 5899999999998887653 26666654421111111111111 1112223222 1222
Q ss_pred CCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||+|.+...+.... +...++.++-|+|+|+|.+++-|
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 47899999998887765 56889999999999999999855
No 266
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.30 E-value=0.0011 Score=46.29 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhc----CCCCCCCC-----CCCCCeEEEEeCCH--HHHHHHHHHhhhc------------c
Q psy890 2 YILFYLVFPGDIAFRFLNYVD----KLPPNTLS-----EHCAPHVTVADINR--AMLDVGEQRARDL------------F 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~----~~~~~~~~-----~~~~~~~~~~D~s~--~~~~~~~~~~~~~------------~ 58 (131)
+||+||.|.|.-...++..+. ....+... .++...++.+|+.. ..+......+... .
T Consensus 89 ~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~ 168 (315)
T PF11312_consen 89 RVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWP 168 (315)
T ss_pred eEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccc
Confidence 689999999887777776661 11111110 12456899999875 4455554444433 0
Q ss_pred CCCCCCCceeEEecccccCCCC-------CCCeeEEEEcccccc-----ccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 59 KVPVPNPRLRFLEANAEELPIE-------SDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 59 ~~~~~~~~~~~~~~d~~~~~~~-------~~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
..++..-+++|...|+..+..+ ....++|...|.+.- ...-.++|.++-..++||..++++|..+.
T Consensus 169 ~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 169 LIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 1111122467888887665421 124677777666542 23557889999999999999999986553
No 267
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.23 E-value=0.002 Score=42.84 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=60.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+.|+||.=+++...+.+..+ ...+++.|+++.-++.+.++++..++.+ +++...+|-...-..+
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~-----------~~~~va~eV~~gpl~~a~~~v~~~~l~~----~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNP-----------ASTAVAGEVVPGPLESAIRNVKKNNLSE----RIDVRLGDGLAVLELE 83 (226)
T ss_pred ceeeccCchhHhHHHHHhcCC-----------cceEEEeecccCHHHHHHHHHHhcCCcc----eEEEeccCCccccCcc
Confidence 378999999999998888753 7789999999999999999999988776 8888888864322334
Q ss_pred CCeeEEEEccc
Q psy890 82 DSYSAYTIAFG 92 (131)
Q Consensus 82 ~~~D~i~~~~~ 92 (131)
+.+|.|+...+
T Consensus 84 d~~d~ivIAGM 94 (226)
T COG2384 84 DEIDVIVIAGM 94 (226)
T ss_pred CCcCEEEEeCC
Confidence 57888876543
No 268
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=97.23 E-value=0.0013 Score=44.91 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=39.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+|+|+|+|+|.++..+++.+.+..+.- ....+++.+|+|+.+.+..++++...
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~---~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEV---YKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHH---HTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhh---hhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 689999999999999999886332100 02468999999999999888887653
No 269
>KOG1099|consensus
Probab=97.18 E-value=0.0025 Score=42.81 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=64.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+++|+.+.+|.|+.-+.+++-+...+.. +....++++|+.+ ....+ -+.-+.+|+....
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~~~--~~~~kIVaVDLQ~-----------MaPI~-----GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPSSG--ERDKKIVAVDLQP-----------MAPIE-----GVIQLQGDITSASTAE 105 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCCcc--hhhccEEEEeccc-----------CCccC-----ceEEeecccCCHhHHH
Confidence 4689999999999999888753211110 1223699999854 11111 4666778877643
Q ss_pred -----CCCCCeeEEEEccc-----cccccC------HHHHHHHHHHhccCCcEEEE
Q psy890 79 -----IESDSYSAYTIAFG-----IRNVTR------IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~-----l~~~~~------~~~~l~~~~~~L~p~G~l~~ 118 (131)
|..++.|+|+|-.. +|.+.+ +..+|.-...+|+|||.|+.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 55678999999543 555543 23445556678999999874
No 270
>PRK10742 putative methyltransferase; Provisional
Probab=97.17 E-value=0.0029 Score=43.02 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=56.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----CCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 77 (131)
+|||.-+|+|..++.++.. +.+|+++|.++......++++.......+. ..+++++..|....
T Consensus 91 ~VLD~TAGlG~Da~~las~-------------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred EEEECCCCccHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 6899999999999988875 567999999999988888877763111000 02678888886554
Q ss_pred -CCCCCCeeEEEEcccc
Q psy890 78 -PIESDSYSAYTIAFGI 93 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l 93 (131)
.-...+||+|++--+.
T Consensus 158 L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 158 LTDITPRPQVVYLDPMF 174 (250)
T ss_pred HhhCCCCCcEEEECCCC
Confidence 2123479999984433
No 271
>KOG3115|consensus
Probab=97.14 E-value=0.0025 Score=42.06 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=34.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+.|||||.|.+...++...+ ..-+.|+++--...+..++++...
T Consensus 64 faDIGCGyGGLlv~Lsp~fP-----------dtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFP-----------DTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred EEeeccCccchhhhccccCc-----------cceeeeehhhHHHHHHHHHHHHHH
Confidence 68999999999998888775 567888888777777666666543
No 272
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.00011 Score=46.14 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=42.5
Q ss_pred eeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 67 LRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 67 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.+++-...+..|.+++.|+|.+.+++.++. ....+++.+++.|||||++-++-
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 3344444445567889999999999998875 56788999999999999998753
No 273
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.94 E-value=0.0032 Score=42.75 Aligned_cols=78 Identities=6% Similarity=-0.121 Sum_probs=53.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||-=-++....... ++..|++.|++..+++.........++ +.+....|.... .+.
T Consensus 108 sVlDigCGlNPlalp~~~~~-----------~~a~Y~a~DID~~~ve~l~~~l~~l~~------~~~~~v~Dl~~~-~~~ 169 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEA-----------PGATYIAYDIDSQLVEFLNAFLAVLGV------PHDARVRDLLSD-PPK 169 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSS-----------TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTS-HTT
T ss_pred hhhhhhccCCceehhhcccC-----------CCcEEEEEeCCHHHHHHHHHHHHhhCC------CcceeEeeeecc-CCC
Confidence 69999999866655444332 367999999999999999888776653 556666675543 234
Q ss_pred CCeeEEEEcccccccc
Q psy890 82 DSYSAYTIAFGIRNVT 97 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~ 97 (131)
...|+.+..-.++.+.
T Consensus 170 ~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 170 EPADLALLLKTLPCLE 185 (251)
T ss_dssp SEESEEEEET-HHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 6689998887777665
No 274
>KOG1501|consensus
Probab=96.90 E-value=0.0027 Score=46.46 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
.+||||+|||-++.+..+.- .-.+++++.-..|...+++.....++++ +++.+.--..+... +
T Consensus 69 ~vLdigtGTGLLSmMAvrag------------aD~vtA~EvfkPM~d~arkI~~kng~Sd----kI~vInkrStev~vg~ 132 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG------------ADSVTACEVFKPMVDLARKIMHKNGMSD----KINVINKRSTEVKVGG 132 (636)
T ss_pred EEEEccCCccHHHHHHHHhc------------CCeEEeehhhchHHHHHHHHHhcCCCcc----ceeeeccccceeeecC
Confidence 47999999999999888873 4569999999999999999999999887 77776544333321 1
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhc-cCCcE
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVL-KPGGR 115 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L-~p~G~ 115 (131)
....|+++.--+...+ ......+++.+++| ++|..
T Consensus 133 ~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 133 SSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred cchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 2335666543322211 12334455666555 55543
No 275
>KOG4058|consensus
Probab=96.86 E-value=0.0086 Score=37.64 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+.+|+|+|.|++....++.- -..-++++.++=.+..++-..-..+... ++.|..-|+.+.++.
T Consensus 75 klvDlGSGDGRiVlaaar~g------------~~~a~GvELNpwLVaysrl~a~R~g~~k----~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCG------------LRPAVGVELNPWLVAYSRLHAWRAGCAK----STRFRRKDLWKVDLR- 137 (199)
T ss_pred cEEeccCCCceeehhhhhhC------------CCcCCceeccHHHHHHHHHHHHHHhccc----chhhhhhhhhhcccc-
Confidence 47899999999988887762 3568899999987777766655555554 788888888776553
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.|.-++.+..-.-+++++ .++..-|..|..++.+-+.-|+
T Consensus 138 -dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 -DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCCc
Confidence 355555544444455554 3344556778888877776665
No 276
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.84 E-value=0.00082 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=28.5
Q ss_pred CeeEEEEcccccccc------CHHHHHHHHHHhccCCcEEEE
Q psy890 83 SYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~------~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.||+|+|..+.-|+. .+..++..+.+.|+|||++++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 489999988766553 357889999999999999976
No 277
>KOG2539|consensus
Probab=96.75 E-value=0.017 Score=42.57 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPIE 80 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~ 80 (131)
+.|+|.|.|.-.-.+...+.. ....++.+|.|..|.....+..+...-.. .......-+.. +|..
T Consensus 204 ~~dfgsg~~~~~~a~~~lwr~---------t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g----~~~v~~~~~~r~~~pi~ 270 (491)
T KOG2539|consen 204 LRDFGSGAGNGGWAAVLLWRQ---------TKREYSLVDRSRAMLKQSEKNLRDGSHIG----EPIVRKLVFHRQRLPID 270 (491)
T ss_pred HHHHHhhcccchhhhhhhccc---------ccceeEeeccchHHHHHHHHhhcChhhcC----chhccccchhcccCCCC
Confidence 456666655443333333320 25689999999999999988877621000 11111111111 2333
Q ss_pred C-CCeeEEEEccccccccCH----HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 S-DSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. ..||+|++.+.++...+. ...-..+++..++|+.+++++-+...
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 3 459999999999887642 34455567778999999998876544
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.72 E-value=0.022 Score=39.46 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=50.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+++|+-||.|..+.-+... +...+.++|+++.+++..+.+++.. .+..|+.++...
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~------------G~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~ 57 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA------------GFEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEK 57 (275)
T ss_pred CcEEEEccCcchHHHHHHHc------------CCEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchh
Confidence 67999999999987766543 2346899999999998888776432 334455554321
Q ss_pred --CCCeeEEEEccccccc
Q psy890 81 --SDSYSAYTIAFGIRNV 96 (131)
Q Consensus 81 --~~~~D~i~~~~~l~~~ 96 (131)
...+|+++....+..+
T Consensus 58 ~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 58 DFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred hcCCCCCEEEeCCCChhh
Confidence 3468999987665543
No 279
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.051 Score=37.18 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=71.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+.+|+|+|+..-++.++..+.... .-.+++.+|+|...+....+.+......- .+.-+++|.+.. . .
T Consensus 81 ~lveLGsGns~Ktr~Llda~~~~~-------~~~ryvpiDv~a~iL~~ta~ai~~~y~~l----~v~~l~~~~~~~La~~ 149 (321)
T COG4301 81 TLVELGSGNSTKTRILLDALAHRG-------SLLRYVPIDVSASILRATATAILREYPGL----EVNALCGDYELALAEL 149 (321)
T ss_pred eEEEecCCccHHHHHHHHHhhhcC-------CcceeeeecccHHHHHHHHHHHHHhCCCC----eEeehhhhHHHHHhcc
Confidence 578999999999999988875111 24789999999988887655554332111 455666775532 1 2
Q ss_pred CCCCeeEE-EEcccccccc--CHHHHHHHHHHhccCCcEEEE-Eecc
Q psy890 80 ESDSYSAY-TIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC-LEFS 122 (131)
Q Consensus 80 ~~~~~D~i-~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~-~~~~ 122 (131)
+..+--++ +....+.++. +...++.++...|+||-++++ +|+-
T Consensus 150 ~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 150 PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 22222222 2233455654 557899999999999988876 3443
No 280
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.71 E-value=0.025 Score=38.32 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
..+++++|+++..++..++..+..++ +++.+..|+.+. | .-.++||++++.-. .......-++.+....||
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk 139 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALK 139 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhC
Confidence 57899999999999999998888774 588888887763 2 12478999988432 112355678888889998
Q ss_pred CCcEEEEEeccC
Q psy890 112 PGGRFLCLEFSH 123 (131)
Q Consensus 112 p~G~l~~~~~~~ 123 (131)
..|...+..++.
T Consensus 140 ~~g~~gy~~~~~ 151 (243)
T PF01861_consen 140 GEGCAGYFGFTH 151 (243)
T ss_dssp STT-EEEEEE-T
T ss_pred CCCceEEEEEec
Confidence 666333333333
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.014 Score=41.64 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=41.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 58 (131)
.++|+|+|+|.+...+++.+....++- ....++..+++|++....-+++++...
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~---~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPEL---YEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHH---HhcceEEEEecCHHHHHHHHHHHhccc
Confidence 589999999999999999875322110 025789999999999998888887643
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.38 E-value=0.032 Score=39.75 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=57.6
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCCCCCCe
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPIESDSY 84 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~ 84 (131)
+| |.|..+..+++.. +.+++++|.+++-.+.+++.=.. .++... ......-.+.+
T Consensus 175 ~G-GlGh~avQ~Aka~------------ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 175 AG-GLGHMAVQYAKAM------------GAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred Cc-HHHHHHHHHHHHc------------CCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhhC
Confidence 44 6778888888875 58999999999988888765322 222222 11111111238
Q ss_pred eEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 85 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 85 D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
|+|+..-. ...+....+.|+++|.++++-..
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 99977533 55678888999999999987554
No 283
>KOG1562|consensus
Probab=96.37 E-value=0.028 Score=39.24 Aligned_cols=104 Identities=8% Similarity=0.030 Sum_probs=74.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
.+|=||.|.|-..+..+++. ...+++.+|++...++..++-.+. .++++ +++.++.+|-..+
T Consensus 124 kvlVVgggDggvlrevikH~-----------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~---~~v~l~iGDG~~fl~ 189 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKHK-----------SVENILLCEIDENVIESSKQYLPTLACGYEG---KKVKLLIGDGFLFLE 189 (337)
T ss_pred eEEEEecCCccceeeeeccc-----------cccceeeehhhHHHHHHHHHHhHHHhcccCC---CceEEEeccHHHHHH
Confidence 46778888888877777762 357899999999999988887664 23443 3788888885443
Q ss_pred CCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.++||+|+.--.=.-.+ =...+...+.+.||++|++...
T Consensus 190 ~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 190 DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 24578899998843211111 1356788899999999998764
No 284
>KOG1253|consensus
Probab=96.20 E-value=0.008 Score=44.48 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=75.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||.-+++|--++..+..++ ...++++-|.+++.+...+++.+.++..+ .++....|+..+
T Consensus 112 ~vLealsAtGlrslRya~El~----------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~----ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELP----------GVRQVVANDLNENAVTSIQRNVELNGVED----IVEPHHSDANVLMYEH 177 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhc----------chhhhcccCCCHHHHHHHHhhhhhcCchh----hcccccchHHHHHHhc
Confidence 578888999988888888876 46789999999999999999998876554 566666665543
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+-....||+|-.- -+-....+|....+.++.||.+.++
T Consensus 178 ~~~~~~FDvIDLD----PyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 178 PMVAKFFDVIDLD----PYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cccccccceEecC----CCCCccHHHHHHHHHhhcCCEEEEE
Confidence 2224679999542 1223456788888888999999875
No 285
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.13 E-value=0.014 Score=39.46 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=45.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----CCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 77 (131)
+|||.-+|-|..+..++.. +.+|++++-|+-+....+..+.......+. ..+++++..|..+.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~-------------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL-------------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH-------------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred EEEECCCcchHHHHHHHcc-------------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 6999999999999988753 468999999997766555443322111100 12688888886663
Q ss_pred -CCCCCCeeEEEEccccc
Q psy890 78 -PIESDSYSAYTIAFGIR 94 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~ 94 (131)
..+..+||+|++--++.
T Consensus 145 L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 145 LRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp CCCHSS--SEEEE--S--
T ss_pred HhhcCCCCCEEEECCCCC
Confidence 44567899999855543
No 286
>KOG1596|consensus
Probab=96.04 E-value=0.058 Score=36.74 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++|-+|+++|.....+...+. +...||+++.|...=.......+... |+.-+.-|+....
T Consensus 159 KVLYLGAasGttVSHvSDiVG----------peG~VYAVEfs~rsGRdL~nmAkkRt-------NiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 159 KVLYLGAASGTTVSHVSDIVG----------PEGCVYAVEFSHRSGRDLINMAKKRT-------NIIPIIEDARHPAKYR 221 (317)
T ss_pred eEEEeeccCCceeehhhcccC----------CCceEEEEEecccchHHHHHHhhccC-------CceeeeccCCCchhee
Confidence 689999999999888888776 57789999998744333332222222 6665666655421
Q ss_pred CCCCCeeEEEEccccccccCH-HHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-.-.|+|++--. .++. .-...+....||++|-+++.
T Consensus 222 mlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 11123566655321 1222 23345566789999988764
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=96.01 E-value=0.016 Score=40.34 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=36.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
.|||.-+|+|.......+. +.+++|+|++++.++.+++++..
T Consensus 211 ~VLDPF~GSGTT~~AA~~l-------------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKAS-------------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred EEEECCCCCcHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999887766554 67899999999999999999864
No 288
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.97 E-value=0.039 Score=37.68 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=59.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH--------------------------HHHHHHHHHhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR--------------------------AMLDVGEQRAR 55 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~--------------------------~~~~~~~~~~~ 55 (131)
.|+|+||-.|..+..+...+.... ....+++++|.=+ ...+..++++.
T Consensus 77 divE~GV~rGgs~~~~~~~l~~~~------~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~ 150 (248)
T PF05711_consen 77 DIVECGVWRGGSSILMRAVLEAYG------NPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFA 150 (248)
T ss_dssp EEEEE--TTSHHHHHHHHHHHCTT------TTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCC
T ss_pred EEEEEeeCCCHHHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHH
Confidence 378999988877665544432110 0245677776321 13444555555
Q ss_pred hccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 56 DLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 56 ~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++.+ .++.++.+.+.+. | .+.+.+-++.. -..........|..++..|.|||++++=|+..
T Consensus 151 ~~gl~~---~~v~~vkG~F~dTLp~~p~~~IAll~l--D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 151 RYGLLD---DNVRFVKGWFPDTLPDAPIERIALLHL--DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTTTSS---TTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HcCCCc---ccEEEECCcchhhhccCCCccEEEEEE--eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 554433 3799998887653 2 22233322222 22233345678999999999999999866654
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.93 E-value=0.2 Score=37.65 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=71.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~- 79 (131)
+|+|..||+|..-....+.+.+.. ....++|.|++...+..++.+.--++..- .+.....|-..-| .
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~-------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i~~~dtl~~~~~~ 257 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQ-------DEIFIYGQEINDTTYRLAKMNLILHGIEG----DANIRHGDTLSNPKHD 257 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhc-------cceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccccccccccCCccc
Confidence 589999999999888877775221 03679999999999999999887665431 1233333322222 2
Q ss_pred ---CCCCeeEEEEccccc---ccc---------------------CH-HHHHHHHHHhccCCcEEEEE
Q psy890 80 ---ESDSYSAYTIAFGIR---NVT---------------------RI-DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ---~~~~~D~i~~~~~l~---~~~---------------------~~-~~~l~~~~~~L~p~G~l~~~ 119 (131)
....||.|+++-.+. |.. .. ..+++++...|+|+|+.-++
T Consensus 258 ~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 258 DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 235699988853331 110 12 67899999999998865543
No 290
>KOG2198|consensus
Probab=95.93 E-value=0.25 Score=35.57 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+.+.+|.-+..+++.+-..+ ....+++=|.+..-+........... . ++..+...++...+
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~-------~~g~vvaND~d~~R~~~L~~q~~~l~-~----~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDP-------TRGYVVANDVDPKRLNMLVHQLKRLP-S----PNLLVTNHDASLFPNIY 225 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCC-------CCCeeEecccCHHHHHHHHHHHhccC-C----cceeeecccceeccccc
Confidence 589999999999999999875322 12478888988877666665553221 1 14444444443332
Q ss_pred ------CCCCCeeEEEEccccc-------------c-c--------cCH-HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 ------IESDSYSAYTIAFGIR-------------N-V--------TRI-DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~-------------~-~--------~~~-~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.....||.|++--.+. . + +.+ ..+|.+-.++||+||.++-..++..
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1234699998732211 1 0 011 3678888899999999987666543
No 291
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.89 E-value=0.24 Score=31.74 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.7
Q ss_pred eEEecccccCC----CCCCCeeEEEEccccccc-----c--------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 68 RFLEANAEELP----IESDSYSAYTIAFGIRNV-----T--------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 68 ~~~~~d~~~~~----~~~~~~D~i~~~~~l~~~-----~--------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.....|+.++. .....||.|+.++..... . =+..++..+.++|+++|.+.++-...++
T Consensus 56 V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 56 VLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 34566777664 246789999998775441 1 1357789999999999999987666655
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.77 E-value=0.15 Score=36.86 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=61.0
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-ccc-C-
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEE-L- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~-~- 77 (131)
+||..|+|+ |..+..+++..+ ..++++++.+++..+.+++..... .+.+...+ ... +
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g-----------~~~vi~~~~~~~~~~~~~~~~~~~--------vi~~~~~~~~~~~l~ 247 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLG-----------AERVIAIDRVPERLEMARSHLGAE--------TINFEEVDDVVEALR 247 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcCCHHHHHHHHHcCCcE--------EEcCCcchHHHHHHH
Confidence 467778877 777777777753 346999999998888877652110 11111111 110 1
Q ss_pred CC-CCCCeeEEEEcccc---------------ccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PI-ESDSYSAYTIAFGI---------------RNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~-~~~~~D~i~~~~~l---------------~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. ....+|+|+-.-.- +...+....+.++.+.++++|.++.+.
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11 22358988774321 111334567888999999999998764
No 293
>PTZ00357 methyltransferase; Provisional
Probab=95.76 E-value=0.085 Score=41.19 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-hhccCCCC---CCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-RDLFKVPV---PNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~d~~~~ 77 (131)
+|+=+|+|-|-+....++...... ...++++++.++........+. ....|.+. ....++++..|+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~g-------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALG-------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcC-------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 478899999998776666543111 3679999999965433332222 22233210 012589999998887
Q ss_pred CCCC-----------CCeeEEEEccccccccC---HHHHHHHHHHhccC----CcE
Q psy890 78 PIES-----------DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKP----GGR 115 (131)
Q Consensus 78 ~~~~-----------~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p----~G~ 115 (131)
..+. +++|+||+=. |-.+-| -.+-|.-+.+.||+ +|+
T Consensus 776 ~~pe~~~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 776 ATAAENGSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 4221 3699998721 222211 13455556666665 665
No 294
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.092 Score=37.75 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=69.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
.|+|--+|||-=++..+...+ ..+++.-|+|+.+++.++++++.+... +...+..|.+.+-. .
T Consensus 55 ~v~DalsatGiRgIRya~E~~-----------~~~v~lNDisp~Avelik~Nv~~N~~~-----~~~v~n~DAN~lm~~~ 118 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETG-----------VVKVVLNDISPKAVELIKENVRLNSGE-----DAEVINKDANALLHEL 118 (380)
T ss_pred EEeecccccchhHhhhhhhcC-----------ccEEEEccCCHHHHHHHHHHHHhcCcc-----cceeecchHHHHHHhc
Confidence 578999999987777777754 458999999999999999999877333 34444466554321 1
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|=. .-+-.+..++....+.++.+|++-++
T Consensus 119 ~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 119 HRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 256888832 11224566788888888899998764
No 295
>KOG1227|consensus
Probab=95.67 E-value=0.014 Score=40.77 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=62.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|+|+-+|-|+++...+-.. +...|.++|.++..++..+++.+.+.+.+ +...+.+|-.. +-+.
T Consensus 197 viVDLYAGIGYFTlpflV~a-----------gAk~V~A~EwNp~svEaLrR~~~~N~V~~----r~~i~~gd~R~-~~~~ 260 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTA-----------GAKTVFACEWNPWSVEALRRNAEANNVMD----RCRITEGDNRN-PKPR 260 (351)
T ss_pred hhhhhhcccceEEeehhhcc-----------CccEEEEEecCHHHHHHHHHHHHhcchHH----HHHhhhccccc-cCcc
Confidence 57899999999988444433 25789999999999999999988776554 55555555433 2344
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcE-EEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR-FLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~-l~~ 118 (131)
...|.|.....-. -++...-+.++|+|.|- ++.
T Consensus 261 ~~AdrVnLGLlPS----se~~W~~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 261 LRADRVNLGLLPS----SEQGWPTAIKALKPEGGSILH 294 (351)
T ss_pred ccchheeeccccc----cccchHHHHHHhhhcCCcEEE
Confidence 5678886644322 22233334555665543 443
No 296
>PHA01634 hypothetical protein
Probab=95.44 E-value=0.14 Score=31.49 Aligned_cols=44 Identities=18% Similarity=0.020 Sum_probs=37.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+|+|+|++-|..++.++-. +..+|+++++++...+..+++++..
T Consensus 31 tV~dIGA~iGdSaiYF~l~------------GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLR------------GASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred EEEEecCCccchhhHHhhc------------CccEEEEeccCHHHHHHHHHHhhhh
Confidence 6899999999998877665 4678999999999999998877654
No 297
>PRK13699 putative methylase; Provisional
Probab=95.40 E-value=0.041 Score=37.05 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=36.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-||+|.......+. +.+++|+|++++..+.+.+++...
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~-------------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS-------------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc-------------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 5899999999887766554 678999999999999999988653
No 298
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.24 E-value=0.046 Score=36.53 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=30.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
++-|..||+|++..-+.-.... .-..+++.|+++++++.|++|+
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~---------~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRR---------RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGG---------GEEEEEEEES-HHHHHHHHHHH
T ss_pred eeeccCCCccHHHHHHHHhhhH---------HHHhHhcccCCHHHHHHHHHhh
Confidence 4679999999985544333221 2568999999999999887765
No 299
>KOG2920|consensus
Probab=94.98 E-value=0.0083 Score=41.40 Aligned_cols=105 Identities=13% Similarity=-0.045 Sum_probs=57.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHH-HHHhhhcc-CCCCCCCceeEEecccc---c
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-EQRARDLF-KVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~d~~---~ 76 (131)
++||+|||+|--.+.+... ....+...|.|...+... ..++.... ..........+....-. +
T Consensus 119 ~vLELgCg~~Lp~i~~~~~------------~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d 186 (282)
T KOG2920|consen 119 RVLELGCGAALPGIFAFVK------------GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD 186 (282)
T ss_pred eeEecCCcccccchhhhhh------------ccceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc
Confidence 5899999999777666554 236788888888776311 00000000 00000001111111111 1
Q ss_pred CC--CCC-CCeeEEEEccccccccCHHHH-HHHHHHhccCCcEEEE
Q psy890 77 LP--IES-DSYSAYTIAFGIRNVTRIDKA-LSEAYRVLKPGGRFLC 118 (131)
Q Consensus 77 ~~--~~~-~~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~p~G~l~~ 118 (131)
+. +.+ ..||+|.++-.+......... .......++++|++++
T Consensus 187 g~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 187 GVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 11 122 279999988887777766655 5555666788888775
No 300
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.84 E-value=0.18 Score=35.25 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=49.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+++|+-||-|-++.-+.+. +...+.++|+++.+.+.-+.++. .....|+.++.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~a------------g~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQA------------GFEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHT------------TEEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHH
T ss_pred CcEEEEccCccHHHHHHHhc------------CcEEEEEeecCHHHHHhhhhccc------------ccccccccccccc
Confidence 57899999999888877665 24579999999998888887774 34566666653
Q ss_pred -CCCCCeeEEEEcccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~ 97 (131)
++. .+|+++....+..++
T Consensus 57 ~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 57 DLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp HHHH-T-SEEEEE---TTTS
T ss_pred cccc-cceEEEeccCCceEe
Confidence 333 589998876665443
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.80 E-value=0.56 Score=33.66 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cc-cc-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NA-EE-L 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~-~~-~ 77 (131)
+++=+|||+ |-++..+++..+ ..+++++|.+++-++.|++....... ..... +. .. .
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-----------a~~Viv~d~~~~Rl~~A~~~~g~~~~--------~~~~~~~~~~~~~ 231 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-----------ASVVIVVDRSPERLELAKEAGGADVV--------VNPSEDDAGAEIL 231 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHHHHHhCCCeEe--------ecCccccHHHHHH
Confidence 356677775 444555566554 68899999999999999875433211 11001 10 00 0
Q ss_pred CCC-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 78 PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 78 ~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
... ...+|+++-.-+ ....+.++.++++|+|.+.++-.....
T Consensus 232 ~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 232 ELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred HHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 112 236899987665 334788899999999999887655443
No 302
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.56 E-value=0.3 Score=34.60 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=51.0
Q ss_pred eeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|=.|+| .|..+..+++..+ ..+++++|.+++-++.+++. +... -+.....++.+.....
T Consensus 173 VlV~G~G~vG~~aiqlak~~G-----------~~~Vi~~~~~~~~~~~a~~l----Ga~~----vi~~~~~~~~~~~~~~ 233 (343)
T PRK09880 173 VFVSGVGPIGCLIVAAVKTLG-----------AAEIVCADVSPRSLSLAREM----GADK----LVNPQNDDLDHYKAEK 233 (343)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CcEEEEEeCCHHHHHHHHHc----CCcE----EecCCcccHHHHhccC
Confidence 4445552 3444555555532 34689999998877777542 2110 0111111111111112
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+.+|+|+-.-+- ...+....+.|+++|.++.+-.
T Consensus 234 g~~D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 234 GYFDVSFEVSGH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 358988765431 2356778889999999988654
No 303
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.56 E-value=0.73 Score=34.93 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=60.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc----
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---- 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---- 76 (131)
+++=+|+|. |..+...++.+ +.+++++|.+++-++.+++. .. ++...+..+
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l------------GA~V~a~D~~~~rle~aesl-GA-----------~~v~i~~~e~~~~ 222 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL------------GAIVRAFDTRPEVAEQVESM-GA-----------EFLELDFEEEGGS 222 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc-CC-----------eEEEecccccccc
Confidence 567788875 44455556654 45899999999888887752 11 111111000
Q ss_pred -------CC----------CC--CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 77 -------LP----------IE--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 77 -------~~----------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.. +. ...+|+|+.......-+.+..+.+++.+.+||||+++.+-.
T Consensus 223 ~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 223 GDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 01 14589999977655444454446899999999999887644
No 304
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.54 E-value=0.21 Score=29.53 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=55.7
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.+ ...+++.+|.+++.++.+++. .+.++.+|..+.. ..-+
T Consensus 3 I~G~g~~~~~i~~~L~~---------~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~ 61 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKE---------GGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIE 61 (116)
T ss_dssp EES-SHHHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGG
T ss_pred EEcCCHHHHHHHHHHHh---------CCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCcc
Confidence 36778899999988862 245899999999887776543 3456777766542 2235
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++.+++... -......+....+-+.|...++..-
T Consensus 62 ~a~~vv~~~~---~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 62 KADAVVILTD---DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp CESEEEEESS---SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCEEEEccC---CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6787777432 1122233444556667777776543
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.20 E-value=0.16 Score=35.96 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+..|+.+|.|.+-+.+....+.. ++.....+...+...-.++|++|..-.+..-..+.-...++.+.||||
T Consensus 191 gA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 191 GADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred CCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCC
Confidence 68899999998777776655533 566666665544333356899988766666667777788999999999
Q ss_pred cEEE
Q psy890 114 GRFL 117 (131)
Q Consensus 114 G~l~ 117 (131)
++++
T Consensus 262 sViv 265 (371)
T COG0686 262 SVIV 265 (371)
T ss_pred cEEE
Confidence 9987
No 306
>PRK11524 putative methyltransferase; Provisional
Probab=94.20 E-value=0.089 Score=36.59 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=36.2
Q ss_pred ceeEEecccccC--CCCCCCeeEEEE--ccccc-c---c----------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFLEANAEEL--PIESDSYSAYTI--AFGIR-N---V----------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~~~d~~~~--~~~~~~~D~i~~--~~~l~-~---~----------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+-+++.+|..+. .++.++||+|++ ++... . . .-....+.++.++|||+|.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456777776553 356678999988 33220 0 0 01256889999999999999874
No 307
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.09 E-value=0.14 Score=34.72 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=49.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEecccccC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.+||||.|.--+ ..++..-. =+-+++|.|+++..++.|+..+..+ ++. ..+++....-..- +
T Consensus 81 ~~LDIGvGAnCI-YPliG~~e----------YgwrfvGseid~~sl~sA~~ii~~N~~l~----~~I~lr~qk~~~~if~ 145 (292)
T COG3129 81 RILDIGVGANCI-YPLIGVHE----------YGWRFVGSEIDSQSLSSAKAIISANPGLE----RAIRLRRQKDSDAIFN 145 (292)
T ss_pred EEEeeccCcccc-ccccccee----------ecceeecCccCHHHHHHHHHHHHcCcchh----hheeEEeccCcccccc
Confidence 578998876432 11211100 1458999999999999999988765 332 1455554332211 1
Q ss_pred ---CCCCCeeEEEEccccccc
Q psy890 79 ---IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~ 96 (131)
-..+.||...|+-.+|..
T Consensus 146 giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 146 GIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccceeeeEecCCCcchh
Confidence 225789999998887754
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.95 E-value=0.53 Score=36.68 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=63.5
Q ss_pred ceeeeecccchhhHHHhhhhcC---C-CCCCCCCCCCCeEEEEeCCH---HHHHHHHHHhhh---------ccCCCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDK---L-PPNTLSEHCAPHVTVADINR---AMLDVGEQRARD---------LFKVPV-P- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~D~s~---~~~~~~~~~~~~---------~~~~~~-~- 63 (131)
+|+|+|-|+|.+.....+.+.. . +..+ ....+++.+|..+ +.+..+...++. ..++.. +
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~---~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPAR---LKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCC---CceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 6999999999998888776621 1 1011 1246899999643 333333221110 000000 0
Q ss_pred -------CC--ceeEEecccccC-CCCCCCeeEEEEccc-cccccCH--HHHHHHHHHhccCCcEEEEE
Q psy890 64 -------NP--RLRFLEANAEEL-PIESDSYSAYTIAFG-IRNVTRI--DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 64 -------~~--~~~~~~~d~~~~-~~~~~~~D~i~~~~~-l~~~~~~--~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. ++++..+|+.+. +.-...+|+|+.-.. -..-+++ ..++.++.++++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 233455665442 211245899987532 2222222 57899999999999998754
No 309
>KOG2352|consensus
Probab=93.80 E-value=0.17 Score=37.64 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=67.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.+|-+|-|+|.+...+...++ ..+++++++++.+++.+...+.-..- .+...+..|-.+.
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~p-----------~~~i~~ve~dP~~l~va~q~f~f~q~-----~r~~V~i~dGl~~~~~~ 361 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSLP-----------KFQITAVEIDPEMLEVATQYFGFMQS-----DRNKVHIADGLDFLQRT 361 (482)
T ss_pred cEEEEecCCCccccceeeecC-----------ccceeEEEEChhHhhccHhhhchhhh-----hhhhhhHhhchHHHHHH
Confidence 467788888999888877765 78999999999999999887643220 1233333332111
Q ss_pred C---CCCCCeeEEEEcc---cccccc------CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 P---IESDSYSAYTIAF---GIRNVT------RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~---~~~~~~D~i~~~~---~l~~~~------~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. -.+..||+++.-- --|.+. -...++..++..|.|.|.+++-
T Consensus 362 ~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 362 AKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred hhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 1 1345689987621 122222 1357788999999999998763
No 310
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.73 E-value=0.24 Score=36.08 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=49.6
Q ss_pred ceeEEecccccCC--CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 66 RLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 66 ~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+++++..++.+.- .+.+++|.++.+-...|++ ...+.++++.+.++|||++++-....+.
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 8999999988752 5678999999998888886 4678899999999999999987655443
No 311
>KOG0024|consensus
Probab=93.66 E-value=0.5 Score=33.65 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|=+|+|+ |-.+...++..+ ..++..+|.+++-++.|++ +-..... +..-.. +...+
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~G-----------A~~VVi~d~~~~Rle~Ak~-~Ga~~~~-----~~~~~~-~~~~~~~~ 233 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMG-----------ASDVVITDLVANRLELAKK-FGATVTD-----PSSHKS-SPQELAEL 233 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-----------CCcEEEeecCHHHHHHHHH-hCCeEEe-----eccccc-cHHHHHHH
Confidence 577788875 555666677765 7899999999999999987 4321111 111000 11111
Q ss_pred ---CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 78 ---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
......+|+.+-..++ +..+......++++|.+.++.++.+.
T Consensus 234 v~~~~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 234 VEKALGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred HHhhccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 1223447888765443 34455667788999998888877654
No 312
>KOG2651|consensus
Probab=93.13 E-value=0.17 Score=36.79 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=32.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 52 (131)
.++|+|+|.|+++..+.-.+ +..|+++|-|....+.+++
T Consensus 156 ~vvD~GaG~G~LSr~lSl~y------------~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFLSLGY------------GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred eeEEcCCCchHHHHHHhhcc------------CceEEEeccchHHHHHHHH
Confidence 47899999999999887764 5789999999877776644
No 313
>KOG2671|consensus
Probab=93.09 E-value=0.1 Score=37.36 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=69.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH-------HHHHhhhccCCCCCCCceeEEecccc
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV-------GEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
|+|--.|||.+....+.- +.-++|.|++-.++.. .+.+++..+..+ +-+....+|..
T Consensus 212 vyDPFVGTGslLvsaa~F-------------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~---~fldvl~~D~s 275 (421)
T KOG2671|consen 212 VYDPFVGTGSLLVSAAHF-------------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS---QFLDVLTADFS 275 (421)
T ss_pred EecCccccCceeeehhhh-------------cceeeccccchheeecccCCCcchhHhHHHhCCcc---hhhheeeeccc
Confidence 677778888876655554 6889999999988872 356677776543 23567788887
Q ss_pred cCCC-CCCCeeEEEE--ccccc----------------------cccC---------HHHHHHHHHHhccCCcEEEEE
Q psy890 76 ELPI-ESDSYSAYTI--AFGIR----------------------NVTR---------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 76 ~~~~-~~~~~D~i~~--~~~l~----------------------~~~~---------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+. ....||.|+| ++++. +.+. ....|.-..+.|..||++++.
T Consensus 276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 7663 3457999998 33332 1110 134566677899999998874
No 314
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.56 E-value=0.12 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCeeEEEEcccccccc--------C---HHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT--------R---IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--------~---~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||.+.+...+.+.- + -.+.+.++.++|||||.+++.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 46799998877775542 1 2577889999999999998853
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.44 E-value=0.86 Score=30.57 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=51.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
+||-.|+|+ |.....+++.. +.++++++.+++..+.+++.-... -+.....+... . .
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~------------g~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~ 196 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAA------------GARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRL 196 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHH
Confidence 467777765 55555555543 578999999887666654321100 01100001000 0 1
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+++....- ...+..+.+.|+++|.++...
T Consensus 197 ~~~~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 197 TGGGGADVVIDAVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred hcCCCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 123568999865331 134666778889999988754
No 316
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.36 E-value=0.085 Score=31.30 Aligned_cols=28 Identities=7% Similarity=-0.253 Sum_probs=21.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (131)
..+|+|||.|-+...|... +-.=+|+|.
T Consensus 61 ~FVDlGCGNGLLV~IL~~E-------------Gy~G~GiD~ 88 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSE-------------GYPGWGIDA 88 (112)
T ss_pred ceEEccCCchHHHHHHHhC-------------CCCcccccc
Confidence 3689999999887766664 556677775
No 317
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.31 E-value=1.5 Score=26.22 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=55.3
Q ss_pred cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C-CCCCCeeE
Q psy890 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P-IESDSYSA 86 (131)
Q Consensus 10 ~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~ 86 (131)
-|..+..+++.. +.+++++|.++.-.+.+++.-... -+.....|+.+ + . .....+|+
T Consensus 2 vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~~~~~Ga~~--------~~~~~~~~~~~~i~~~~~~~~~d~ 61 (130)
T PF00107_consen 2 VGLMAIQLAKAM------------GAKVIATDRSEEKLELAKELGADH--------VIDYSDDDFVEQIRELTGGRGVDV 61 (130)
T ss_dssp HHHHHHHHHHHT------------TSEEEEEESSHHHHHHHHHTTESE--------EEETTTSSHHHHHHHHTTTSSEEE
T ss_pred hHHHHHHHHHHc------------CCEEEEEECCHHHHHHHHhhcccc--------cccccccccccccccccccccceE
Confidence 466777788774 489999999998887776432110 01111111111 1 1 22357999
Q ss_pred EEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 87 i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
|+-.-+ -...+....+.++++|.+.++-...
T Consensus 62 vid~~g------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 62 VIDCVG------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEESSS------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred EEEecC------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 987543 2457788899999999999875544
No 318
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.18 E-value=1.8 Score=30.88 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=49.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++++|+-||-|-+..-+... +...+.++|+++..+..-+.+.+. ..+...|.....
T Consensus 4 ~~~idLFsG~GG~~lGf~~a------------gf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~ 61 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA------------GFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGE 61 (328)
T ss_pred ceEEeeccCCchHHHHHHhc------------CCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChh
Confidence 57899999999887655443 245689999999888888777652 223344444332
Q ss_pred -CCCCCeeEEEEcccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~ 97 (131)
+....+|+++....+..++
T Consensus 62 ~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 62 ALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred hccccCCCEEEeCCCCcchh
Confidence 1111678888766665543
No 319
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.17 E-value=1.1 Score=33.15 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=65.9
Q ss_pred eeeeec-ccchh--hHHHhhhhcCCCCCCCCCCCCCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 3 ILFYLV-FPGDI--AFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 3 iLdig~-G~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
|+=+|- |+|-. +..++.++.+.. ...-++++|.- +.++++.+...... .+.|+..+....|
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~-------~kvllVaaD~~RpAA~eQL~~La~q~--------~v~~f~~~~~~~P 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKG-------KKVLLVAADTYRPAAIEQLKQLAEQV--------GVPFFGSGTEKDP 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcC-------CceEEEecccCChHHHHHHHHHHHHc--------CCceecCCCCCCH
Confidence 444544 55543 555666665321 24568888854 56677776665554 4555555433333
Q ss_pred ----------CCCCCeeEEEEccc--cccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 ----------IESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ----------~~~~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.....||+|+.--. +|.=..+-.-+.+++..++|.-.++++|-.
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 23467999998544 333345667789999999999999998754
No 320
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.01 E-value=2.5 Score=28.40 Aligned_cols=78 Identities=10% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc-cCCCCCCCeeEEEEccccccccCHHHHHHHHHHh--
Q psy890 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE-ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRV-- 109 (131)
Q Consensus 33 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~-- 109 (131)
.+.+++++-++++.+...++.+...+..+ .++|+.++.. +.-..-..+|.++.--- ..+.. .++.+.
T Consensus 68 TgGR~vCIvp~~~~~~~~~~~l~~~~~~~----~vEfvvg~~~e~~~~~~~~iDF~vVDc~---~~d~~---~~vl~~~~ 137 (218)
T PF07279_consen 68 TGGRHVCIVPDEQSLSEYKKALGEAGLSD----VVEFVVGEAPEEVMPGLKGIDFVVVDCK---REDFA---ARVLRAAK 137 (218)
T ss_pred cCCeEEEEcCChhhHHHHHHHHhhccccc----cceEEecCCHHHHHhhccCCCEEEEeCC---chhHH---HHHHHHhc
Confidence 47899999999988888888887766653 6788887743 22112245677765322 22333 233333
Q ss_pred ccCCcEEEEEe
Q psy890 110 LKPGGRFLCLE 120 (131)
Q Consensus 110 L~p~G~l~~~~ 120 (131)
+.|.|-+++..
T Consensus 138 ~~~~GaVVV~~ 148 (218)
T PF07279_consen 138 LSPRGAVVVCY 148 (218)
T ss_pred cCCCceEEEEe
Confidence 44667776654
No 321
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=92.01 E-value=1.3 Score=31.11 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeE----EecccccCC---
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF----LEANAEELP--- 78 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~~--- 78 (131)
+-.|+|.+...+++.+-.. ...+++.+|.++..+...+..+......+ ++++ +.+|+.+..
T Consensus 3 VTGa~GSIGseL~rql~~~--------~p~~lil~d~~E~~l~~l~~~l~~~~~~~----~v~~~~~~vigDvrd~~~l~ 70 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRY--------GPKKLILFDRDENKLYELERELRSRFPDP----KVRFEIVPVIGDVRDKERLN 70 (293)
T ss_dssp EETTTSHHHHHHHHHHHCC--------B-SEEEEEES-HHHHHHHHHHCHHHC--T----TCEEEEE--CTSCCHHHHHH
T ss_pred EEccccHHHHHHHHHHHhc--------CCCeEEEeCCChhHHHHHHHHHhhccccc----CcccccCceeecccCHHHHH
Confidence 4567889999998887522 13689999999999998888875332111 4443 477776542
Q ss_pred --CCCCCeeEEEEcccccccc
Q psy890 79 --IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~ 97 (131)
+.....|+|+-...+-|.+
T Consensus 71 ~~~~~~~pdiVfHaAA~KhVp 91 (293)
T PF02719_consen 71 RIFEEYKPDIVFHAAALKHVP 91 (293)
T ss_dssp HHTT--T-SEEEE------HH
T ss_pred HHHhhcCCCEEEEChhcCCCC
Confidence 4556799999888877665
No 322
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.92 E-value=0.84 Score=35.28 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=57.7
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|+.+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+.
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 406 VGFGRFGQVIGRLLMA---------NKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ecCchHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCcc
Confidence 7888899988887652 357899999999888877531 3456777876643 12346
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.|.+++... + ++....+.+..+.+.|+..++..-.+
T Consensus 465 A~~vv~~~~--d-~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 465 AEAIVITCN--E-PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred CCEEEEEeC--C-HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 787776421 1 11122344445667788887765433
No 323
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.81 E-value=1 Score=34.13 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=27.7
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..+|+|+..-.+..-+.+.-..+++.+.||||++++=
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 4699998877655555555567788899999999763
No 324
>KOG0821|consensus
Probab=91.71 E-value=0.28 Score=33.17 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=41.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+++||.|.|..+..+++. ...++..++++..++.-.+-..+... .++.++..|+..
T Consensus 53 ~v~eIgPgpggitR~il~a------------~~~RL~vVE~D~RFip~LQ~L~EAa~------~~~~IHh~D~LR 109 (326)
T KOG0821|consen 53 YVYEIGPGPGGITRSILNA------------DVARLLVVEKDTRFIPGLQMLSEAAP------GKLRIHHGDVLR 109 (326)
T ss_pred eeEEecCCCCchhHHHHhc------------chhheeeeeeccccChHHHHHhhcCC------cceEEeccccce
Confidence 5789999999999999886 35689999999887776654444322 156666666543
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.66 E-value=0.99 Score=31.54 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe-ccccc-C-
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE-ANAEE-L- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~-~- 77 (131)
.||..|+| .|..+..+++.. +.++++++.++...+.+++. +.. .+.... .+... .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~------------G~~V~~~~~s~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~ 226 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM------------GAAVIAVDIKEEKLELAKEL----GAD-----EVLNSLDDSPKDKKA 226 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHHh----CCC-----EEEcCCCcCHHHHHH
Confidence 35555654 355566666653 46799999998877766431 111 110000 00000 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+++..... ...+.++.+.|+++|.++...
T Consensus 227 ~~~~~~~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 227 AGLGGGFDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HhcCCCceEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 1234568988764321 345778889999999998754
No 326
>PRK13699 putative methylase; Provisional
Probab=91.61 E-value=0.3 Score=32.95 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=31.2
Q ss_pred eEEecccccC--CCCCCCeeEEEEc--ccc--cc-----c-----cC-HHHHHHHHHHhccCCcEEEE
Q psy890 68 RFLEANAEEL--PIESDSYSAYTIA--FGI--RN-----V-----TR-IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 68 ~~~~~d~~~~--~~~~~~~D~i~~~--~~l--~~-----~-----~~-~~~~l~~~~~~L~p~G~l~~ 118 (131)
+++.+|..+. .++++++|+|++. +.+ .. + .+ ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455554433 3566777877774 211 00 0 01 24778999999999998875
No 327
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.04 E-value=2 Score=30.17 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
||-.|+|. |..+..+++..+ ..++++++.++...+.+++. +... -+.....+........
T Consensus 169 VLI~g~g~vG~~~~~lak~~G-----------~~~v~~~~~s~~~~~~~~~~----g~~~----vi~~~~~~~~~~~~~~ 229 (339)
T cd08232 169 VLVTGAGPIGALVVAAARRAG-----------AAEIVATDLADAPLAVARAM----GADE----TVNLARDPLAAYAADK 229 (339)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CcEEEEECCCHHHHHHHHHc----CCCE----EEcCCchhhhhhhccC
Confidence 44455543 445555555532 22788998888777654432 1100 0100000111111112
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+++..... ...+.++.+.|+++|+++.+.
T Consensus 230 ~~vd~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 230 GDFDVVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCccEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 358999765331 234677889999999988653
No 328
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.78 E-value=1.1 Score=27.85 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=24.1
Q ss_pred eeecccc--hhhHHHhh-hhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy890 5 FYLVFPG--DIAFRFLN-YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 5 dig~G~G--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
|+|++.| ..+..++. ... +..+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~----------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG----------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS------------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHhHH
Confidence 7999999 44443332 222 367899999999999998888
No 329
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.68 E-value=3.7 Score=28.87 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=52.8
Q ss_pred Cceeeeeccc--chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH--hhhccCCCCCCCceeEEeccccc
Q psy890 1 MYILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR--ARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
|+|+-+|+|. |.++..|.+. +..|+.++-+.+.++..++. +...... ...........
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-------------G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g-----~~~~~~~~~~~ 64 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-------------GLPVRLILRDRQRLAAYQQAGGLTLVEQG-----QASLYAIPAET 64 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-------------CCCeEEEEechHHHHHHhhcCCeEEeeCC-----cceeeccCCCC
Confidence 6778888763 2333333332 45788999876555555432 1110000 11111111110
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+...+.||+|+..- -..+....+..+..++.++..++...-+
T Consensus 65 -~~~~~~~D~viv~v---K~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 65 -ADAAEPIHRLLLAC---KAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred -cccccccCEEEEEC---CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 11234789887632 1124567788899999999988776533
No 330
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.47 E-value=0.67 Score=33.62 Aligned_cols=76 Identities=20% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+.+++++|.+++..+.+...+.. .+.....+...+.-.-..+|+|+..-.+...+.+.-+-.+..+.++|+
T Consensus 190 Ga~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g 260 (370)
T TIGR00518 190 GATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPG 260 (370)
T ss_pred CCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCC
Confidence 45899999988665554433311 111111111111101135799997543322211211225555678999
Q ss_pred cEEEE
Q psy890 114 GRFLC 118 (131)
Q Consensus 114 G~l~~ 118 (131)
++++-
T Consensus 261 ~vIvD 265 (370)
T TIGR00518 261 AVIVD 265 (370)
T ss_pred CEEEE
Confidence 88764
No 331
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.28 E-value=0.55 Score=32.38 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=28.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
.++|+|||.|.++..+...+.... .....++.+|-..
T Consensus 21 ~~vEfGaGrg~LS~~v~~~~~~~~------~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 21 CFVEFGAGRGELSRWVAQALQEDK------PSNSRFVLIDRAS 57 (259)
T ss_pred EEEEECCCchHHHHHHHHHhhhcc------cCCccEEEEecCc
Confidence 479999999999999999875320 0257899999755
No 332
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.81 E-value=2.8 Score=25.36 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=54.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|+|.|-=......++. .+..++++|+++. +.+ + -++++..|+.+....
T Consensus 16 kVvEVGiG~~~~VA~~L~e------------~g~dv~atDI~~~-------~a~----~-----g~~~v~DDitnP~~~i 67 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAE------------RGFDVLATDINEK-------TAP----E-----GLRFVVDDITNPNISI 67 (129)
T ss_pred cEEEEccchHHHHHHHHHH------------cCCcEEEEecccc-------cCc----c-----cceEEEccCCCccHHH
Confidence 5788888764332222222 2578999999874 111 1 578888888775422
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
-...|+|.+ +...+++.+.+-.+.+.++- .+++...+.
T Consensus 68 Y~~A~lIYS---iRpppEl~~~ildva~aVga--~l~I~pL~G 105 (129)
T COG1255 68 YEGADLIYS---IRPPPELQSAILDVAKAVGA--PLYIKPLTG 105 (129)
T ss_pred hhCccceee---cCCCHHHHHHHHHHHHhhCC--CEEEEecCC
Confidence 134688876 55566777777777776654 344444443
No 333
>KOG0780|consensus
Probab=89.67 E-value=1.7 Score=31.92 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEe----cccccCC------CCCCCeeEEEEcccccccc--CHH
Q psy890 34 APHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLE----ANAEELP------IESDSYSAYTIAFGIRNVT--RID 100 (131)
Q Consensus 34 ~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~------~~~~~~D~i~~~~~l~~~~--~~~ 100 (131)
...+++.|.- ..+..+.+.+.... ++.|+. .|..... +..+.||+|++--.=+|-. .+-
T Consensus 131 K~~LvcaDTFRagAfDQLkqnA~k~--------~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 131 KVALVCADTFRAGAFDQLKQNATKA--------RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred ceeEEeecccccchHHHHHHHhHhh--------CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 4567888843 34555666555544 343433 2222221 5568899999966544433 455
Q ss_pred HHHHHHHHhccCCcEEEEEecc
Q psy890 101 KALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 101 ~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.-+.++.+.++|+-++++.|-+
T Consensus 203 eEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 203 EEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHHHhhcCCCeEEEEEecc
Confidence 6688899999999999998754
No 334
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=89.19 E-value=1.6 Score=36.52 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=54.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.+||+|.|.-. .++..++ ....++.+|.-+ -......|.. ...|+..|..... ..
T Consensus 825 ~~lDLGTGPE~---RiLsliP----------~~~pvtmvD~RP-------~ae~m~~w~t----~T~y~~~DYl~~~~~~ 880 (1289)
T PF06016_consen 825 HWLDLGTGPEC---RILSLIP----------PDTPVTMVDTRP-------FAEPMNCWNT----QTQYIQADYLSDAWWN 880 (1289)
T ss_dssp CEEEET--TT----CHHHCS-----------TTSEEEEEESS---------SSSCCCCST----TEEEEES-TTSCCGGC
T ss_pred eEEEccCCccc---eeeeccC----------CCCceEEEecCC-------cccccchhhh----cceeeeeccccceeEe
Confidence 47888888742 2334443 467899999855 1223344443 7899999987755 34
Q ss_pred CCCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcE
Q psy890 81 SDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~ 115 (131)
...+|.+.|.+.|..- -++...++++.+.+++.|.
T Consensus 881 ~~~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 881 GTPFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp C---SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred cCCCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 5679999998877432 2678889999999988875
No 335
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.09 E-value=2.4 Score=28.20 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+|+|.--|..+...+...-.. + ...+|.++|++-.....+... . +.+.++.++-.+..
T Consensus 72 lvIE~Gs~~GGSal~fA~~m~s~--G-----q~~kvl~vdIdi~~~~p~a~e-----~-----p~i~f~egss~dpai~e 134 (237)
T COG3510 72 LVIEFGSRHGGSALFFANMMISI--G-----QPFKVLGVDIDIKPLDPAARE-----V-----PDILFIEGSSTDPAIAE 134 (237)
T ss_pred eeEeeccccCchhhhhhHhHHhc--C-----CCceEEEEecccCcCChhhhc-----C-----CCeEEEeCCCCCHHHHH
Confidence 47899987776655555532100 0 247899999986544433222 1 27999998866543
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+.--+.++--.-|++....+.|+.+.++|..|.++++-|
T Consensus 135 qi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 135 QIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred HHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 122222334444445666666777888889999999987644
No 336
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.04 E-value=2.3 Score=32.55 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=54.1
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+
T Consensus 422 I~G~G~~G~~la~~L~~---------~g~~vvvId~d~~~~~~~~~~------------g~~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLA---------AGIPLVVIETSRTRVDELRER------------GIRAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred EECCChHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHC------------CCeEEEcCCCCHHHHHhcCcc
Confidence 37888899999998752 256899999999887777531 4566777876632 1224
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+|.++..-. + ++....+....+...|+-.++..
T Consensus 481 ~a~~viv~~~--~-~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIP--N-GYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcC--C-hHHHHHHHHHHHHHCCCCeEEEE
Confidence 6786655311 0 01112233344555677666553
No 337
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.94 E-value=2.4 Score=31.84 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=32.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
++++|+-||.|-++.-+-.. +...+.++|+++.+.+.-+.++
T Consensus 89 ~~~iDLFsGiGGl~lGfe~a------------G~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAI------------GGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHc------------CCEEEEEEechHHHHHHHHHHc
Confidence 47899999999888777443 2456889999998888777765
No 338
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.77 E-value=3.4 Score=28.91 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
|..+|+|+-+|.|+..+.+. +..|+++|-..
T Consensus 213 M~avDLGAcPGGWTyqLVkr-------------~m~V~aVDng~ 243 (358)
T COG2933 213 MWAVDLGACPGGWTYQLVKR-------------NMRVYAVDNGP 243 (358)
T ss_pred ceeeecccCCCccchhhhhc-------------ceEEEEeccch
Confidence 67899999999999999886 78999999644
No 339
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.59 E-value=2.3 Score=33.11 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=54.7
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|+.+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+.
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 406 AGFGRFGQIVGRLLLS---------SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred EecChHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCc
Confidence 6777788888877652 256899999999988877541 3456777876643 12346
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+|.+++... -++....+....+.+.|+-.++...
T Consensus 465 A~~vvv~~~---d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 465 AEVLINAID---DPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 787776421 1112223334455566776665533
No 340
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.05 E-value=1.9 Score=26.45 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=40.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++|=+|+ |..+..++..+... ...+++.++-+.+-.+...+.+... .+.+...+ +.....
T Consensus 14 ~vlviGa--Gg~ar~v~~~L~~~--------g~~~i~i~nRt~~ra~~l~~~~~~~--------~~~~~~~~--~~~~~~ 73 (135)
T PF01488_consen 14 RVLVIGA--GGAARAVAAALAAL--------GAKEITIVNRTPERAEALAEEFGGV--------NIEAIPLE--DLEEAL 73 (135)
T ss_dssp EEEEESS--SHHHHHHHHHHHHT--------TSSEEEEEESSHHHHHHHHHHHTGC--------SEEEEEGG--GHCHHH
T ss_pred EEEEECC--HHHHHHHHHHHHHc--------CCCEEEEEECCHHHHHHHHHHcCcc--------ccceeeHH--HHHHHH
Confidence 3555665 44555555544311 2456999999876655555555111 34444433 322112
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
..+|+|+..-...+.
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 469999987665443
No 341
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.93 E-value=5.8 Score=28.14 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=44.9
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-CC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-ES 81 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 81 (131)
++|+-||.|-++.-+.+. +...+.++|+++.+.+..+.++.. .....|+.++.. .-
T Consensus 1 vidLF~G~GG~~~Gl~~a------------G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~ 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------------GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDI 57 (315)
T ss_pred CEEEecCccHHHHHHHHc------------CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhC
Confidence 588999999888766543 233467899999998888877643 122345444421 11
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
..+|+++....+..+
T Consensus 58 ~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 58 PDFDILLGGFPCQPF 72 (315)
T ss_pred CCcCEEEecCCCccc
Confidence 247888776554433
No 342
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.92 E-value=4.6 Score=28.76 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+-.-+- ...+.+..+.|+++|.++++-.
T Consensus 237 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGV------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCC------HHHHHHHHHHccCCcEEEEEec
Confidence 458988775431 2356788899999999887654
No 343
>KOG1209|consensus
Probab=87.85 E-value=4 Score=27.76 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.||-.||.+|.+...++++... .+..|+++--+.+-.......+ .++...+|..+.
T Consensus 9 ~VlItgcs~GGIG~ala~ef~~---------~G~~V~AtaR~~e~M~~L~~~~-----------gl~~~kLDV~~~~~V~ 68 (289)
T KOG1209|consen 9 KVLITGCSSGGIGYALAKEFAR---------NGYLVYATARRLEPMAQLAIQF-----------GLKPYKLDVSKPEEVV 68 (289)
T ss_pred eEEEeecCCcchhHHHHHHHHh---------CCeEEEEEccccchHhhHHHhh-----------CCeeEEeccCChHHHH
Confidence 4788999999999999888641 3567777765443332222111 233444444332
Q ss_pred -------CCCCCCeeEEEEcccccc
Q psy890 78 -------PIESDSYSAYTIAFGIRN 95 (131)
Q Consensus 78 -------~~~~~~~D~i~~~~~l~~ 95 (131)
.++.++.|+.+.+.+..+
T Consensus 69 ~v~~evr~~~~Gkld~L~NNAG~~C 93 (289)
T KOG1209|consen 69 TVSGEVRANPDGKLDLLYNNAGQSC 93 (289)
T ss_pred HHHHHHhhCCCCceEEEEcCCCCCc
Confidence 146788999988776543
No 344
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.92 E-value=10 Score=27.96 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+-+|+ |..+..+++.+.. .+.+++++|.+++.++.+++.. .+.++.+|..+..
T Consensus 1 m~viIiG~--G~ig~~~a~~L~~---------~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l 58 (453)
T PRK09496 1 MKIIIVGA--GQVGYTLAENLSG---------ENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVL 58 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHH
Confidence 56666665 7788888887642 2568999999998766655321 4556666655421
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..-+.+|.|++...- .+....+....+.+.|.-.+++
T Consensus 59 ~~~~~~~a~~vi~~~~~---~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 59 REAGAEDADLLIAVTDS---DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred HHcCCCcCCEEEEecCC---hHHHHHHHHHHHHhcCCCeEEE
Confidence 123467888774321 1223334444555545444443
No 345
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.87 E-value=8.2 Score=27.42 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
..+++++|.+++-++.+++ .+ .. ... + +.. ....+|+|+-.-+- ......+.+..+.|+++
T Consensus 189 ~~~vi~~~~~~~k~~~a~~----~~-------~~-~~~-~--~~~-~~~g~d~viD~~G~---~~~~~~~~~~~~~l~~~ 249 (341)
T cd08237 189 ESKLVVFGKHQEKLDLFSF----AD-------ET-YLI-D--DIP-EDLAVDHAFECVGG---RGSQSAINQIIDYIRPQ 249 (341)
T ss_pred CCcEEEEeCcHhHHHHHhh----cC-------ce-eeh-h--hhh-hccCCcEEEECCCC---CccHHHHHHHHHhCcCC
Confidence 4679999998877766653 11 11 111 1 111 11147888764331 11245678888999999
Q ss_pred cEEEEEec
Q psy890 114 GRFLCLEF 121 (131)
Q Consensus 114 G~l~~~~~ 121 (131)
|+++++-.
T Consensus 250 G~iv~~G~ 257 (341)
T cd08237 250 GTIGLMGV 257 (341)
T ss_pred cEEEEEee
Confidence 99987654
No 346
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.84 E-value=5.9 Score=27.70 Aligned_cols=84 Identities=20% Similarity=0.103 Sum_probs=47.1
Q ss_pred eeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|=+|+| -|..+..+++..+ ...+.++|.+++.++.+.+. . -+ |..+. ..
T Consensus 148 vlV~G~G~vG~~a~q~ak~~G-----------~~~v~~~~~~~~rl~~a~~~----~-------~i-----~~~~~--~~ 198 (308)
T TIGR01202 148 DLIVGHGTLGRLLARLTKAAG-----------GSPPAVWETNPRRRDGATGY----E-------VL-----DPEKD--PR 198 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHhhhhc----c-------cc-----Chhhc--cC
Confidence 4445653 3445555555542 33477788877655544321 1 00 11110 12
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+-.-+- ...+.++.+.|+++|+++++-.
T Consensus 199 ~g~Dvvid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 199 RDYRAIYDASGD------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhhcCcEEEEEee
Confidence 458988775431 2356778889999999987643
No 347
>PRK05599 hypothetical protein; Provisional
Probab=86.62 E-value=6.9 Score=26.29 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=49.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|++|-.|+++| +...+++.+. .+.+++.++.+++-++...+.++..+.. .+.++..|+.+..
T Consensus 1 ~~vlItGas~G-IG~aia~~l~----------~g~~Vil~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~Dv~d~~~v 64 (246)
T PRK05599 1 MSILILGGTSD-IAGEIATLLC----------HGEDVVLAARRPEAAQGLASDLRQRGAT-----SVHVLSFDAQDLDTH 64 (246)
T ss_pred CeEEEEeCccH-HHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHHhccCC-----ceEEEEcccCCHHHH
Confidence 56777777654 5666666654 2567888888887777666666543311 4677788876642
Q ss_pred --------CCCCCeeEEEEcccc
Q psy890 79 --------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --------~~~~~~D~i~~~~~l 93 (131)
...+..|+++.+.+.
T Consensus 65 ~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 65 RELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred HHHHHHHHHhcCCCCEEEEecCc
Confidence 012568999886654
No 348
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.10 E-value=7.3 Score=30.09 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=59.9
Q ss_pred eeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C
Q psy890 5 FYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I 79 (131)
Q Consensus 5 dig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 79 (131)
=+-.|+|.+...+++.+-+.. ..++..+|.++..+......+...... .++.++.+|..+.. +
T Consensus 254 LVTGagGSiGsel~~qil~~~--------p~~i~l~~~~E~~~~~i~~el~~~~~~----~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 254 LVTGGGGSIGSELCRQILKFN--------PKEIILFSRDEYKLYLIDMELREKFPE----LKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred EEeCCCCcHHHHHHHHHHhcC--------CCEEEEecCchHHHHHHHHHHHhhCCC----cceEEEecccccHHHHHHHH
Confidence 356688899999988765322 468999999998888887777664212 17889999987753 4
Q ss_pred CCCCeeEEEEcccccccc
Q psy890 80 ESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~ 97 (131)
.+.+.|+|+-...+-|.|
T Consensus 322 ~~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 322 EGHKVDIVFHAAALKHVP 339 (588)
T ss_pred hcCCCceEEEhhhhccCc
Confidence 456789999888877776
No 349
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.94 E-value=7.8 Score=25.59 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+||-.|+ +|.+...+++.+.+ .+.+|++++.+++-.....+.....+ ++.++..|+.+..
T Consensus 7 ~vlItGa-~g~iG~~~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dl~~~~~~~ 69 (238)
T PRK05786 7 KVAIIGV-SEGLGYAVAYFALK---------EGAQVCINSRNENKLKRMKKTLSKYG-------NIHYVVGDVSSTESAR 69 (238)
T ss_pred EEEEECC-CchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEECCCCCHHHHH
Confidence 3555555 45566666665531 25689999988876655544443322 5677778766532
Q ss_pred --C-----CCCCeeEEEEcccccccc-----------------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 --I-----ESDSYSAYTIAFGIRNVT-----------------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 --~-----~~~~~D~i~~~~~l~~~~-----------------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+ .-+.+|.++.+....... .....++.+.+.++++|.++++..
T Consensus 70 ~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 70 NVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0 013468777665432111 112335556667777888777643
No 350
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.86 E-value=2.9 Score=25.66 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=45.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|+|.|.-......++.. +..++++|+.+. ..+ . .+.++..|+.+....
T Consensus 16 kiVEVGiG~~~~vA~~L~~~------------G~dV~~tDi~~~-------~a~--~-------g~~~v~DDif~P~l~i 67 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKER------------GFDVIATDINPR-------KAP--E-------GVNFVVDDIFNPNLEI 67 (127)
T ss_dssp EEEEET-TT--HHHHHHHHH------------S-EEEEE-SS-S--------------------STTEE---SSS--HHH
T ss_pred cEEEECcCCCHHHHHHHHHc------------CCcEEEEECccc-------ccc--c-------CcceeeecccCCCHHH
Confidence 58899998765544444442 589999999885 111 1 567788887764321
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
-...|+|.+.. -.++++..+.++.+.. |.-+++..++..
T Consensus 68 Y~~a~lIYSiR---PP~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 68 YEGADLIYSIR---PPPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp HTTEEEEEEES-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred hcCCcEEEEeC---CChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 14679988743 3456666666666554 345666555543
No 351
>KOG1201|consensus
Probab=85.82 E-value=9.1 Score=27.08 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=51.4
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|--|+|+| +.+.++..+.+ .+.++...|++++..+...+.++..+ ++..+..|..+..
T Consensus 41 vLITGgg~G-lGr~ialefa~---------rg~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 41 VLITGGGSG-LGRLIALEFAK---------RGAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYR 103 (300)
T ss_pred EEEeCCCch-HHHHHHHHHHH---------hCCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHH
Confidence 455566665 34444443321 36789999999988888877777655 6777888876542
Q ss_pred ------CCCCCeeEEEEccccccc
Q psy890 79 ------IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~ 96 (131)
..-+..|+++.+.++...
T Consensus 104 ~a~~Vk~e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 104 LAKKVKKEVGDVDILVNNAGIVTG 127 (300)
T ss_pred HHHHHHHhcCCceEEEeccccccC
Confidence 123578999998876543
No 352
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.52 E-value=12 Score=27.33 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=61.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC----CHHHHHHHHHHhhhccCCCCCCCceeEEec---cc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI----NRAMLDVGEQRARDLFKVPVPNPRLRFLEA---NA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~----s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~ 74 (131)
.|+|+|.|.|.-=..+++.+...+ ..++..++|+++. +...++...+++....-.- .-..+|... +.
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l--gv~fef~~v~~~~~ 186 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRP----GGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL--GVPFEFHPVVVESL 186 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc--CccEEEEecccCch
Confidence 589999999855444555554333 1125789999999 7777777776655421000 002344442 22
Q ss_pred ccCC-----CCCCCeeEEEEcccccccc-------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELP-----IESDSYSAYTIAFGIRNVT-------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~-----~~~~~~D~i~~~~~l~~~~-------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.+. ...+..=+|-+.+.+|++. ++...+-...+.|+|.-++ ++|..
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~e 245 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQE 245 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeec
Confidence 2221 2233333444556667764 2223344455678997444 44443
No 353
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=85.50 E-value=3.4 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCCCeeEEEEcccccccc------------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT------------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~------------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+..|+|++++++..+. ++++.+..+.++|+|...++...
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 445689999999987653 35666667777777777666543
No 354
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.78 E-value=5.2 Score=29.40 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
|+||=+|| |..+..++..+-.. ...+++..|.|.+.+.++...... +++....|+.+.+ .
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~--------~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~~vD~~d~~al 62 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN--------GDGEVTIADRSKEKCARIAELIGG---------KVEALQVDAADVDAL 62 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHhhccc---------cceeEEecccChHHH
Confidence 57888999 44555555553210 237999999998877777655422 6777888877653 1
Q ss_pred --CCCCeeEEEEcc
Q psy890 80 --ESDSYSAYTIAF 91 (131)
Q Consensus 80 --~~~~~D~i~~~~ 91 (131)
--..+|+|+...
T Consensus 63 ~~li~~~d~VIn~~ 76 (389)
T COG1748 63 VALIKDFDLVINAA 76 (389)
T ss_pred HHHHhcCCEEEEeC
Confidence 013358888743
No 355
>KOG2078|consensus
Probab=84.74 E-value=1 Score=33.38 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
.|-|+-||-|-++..++.+ +.+|++-|.++++++..+.+++.+...+ .++..+..|..
T Consensus 252 vv~D~FaGvGPfa~Pa~kK-------------~crV~aNDLNpesik~Lk~ni~lNkv~~---~~iei~Nmda~ 309 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKK-------------GCRVYANDLNPESIKWLKANIKLNKVDP---SAIEIFNMDAK 309 (495)
T ss_pred hhhhhhcCcCccccchhhc-------------CcEEEecCCCHHHHHHHHHhccccccch---hheeeecccHH
Confidence 4568889999888877775 5799999999999999999988776665 13677666644
No 356
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=84.37 E-value=5.3 Score=28.19 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC---CCCeeEEEEccccccccCHHHHHHHHHHhc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 110 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 110 (131)
..++.++|+++..+....+..+..++. ++..+..|+.+ |++ ...||+++.--. ..++....++.+=...|
T Consensus 175 pk~iaVvDIDERli~fi~k~aee~g~~-----~ie~~~~Dlr~-plpe~~~~kFDvfiTDPp-eTi~alk~FlgRGI~tL 247 (354)
T COG1568 175 PKRIAVVDIDERLIKFIEKVAEELGYN-----NIEAFVFDLRN-PLPEDLKRKFDVFITDPP-ETIKALKLFLGRGIATL 247 (354)
T ss_pred CceEEEEechHHHHHHHHHHHHHhCcc-----chhheeehhcc-cChHHHHhhCCeeecCch-hhHHHHHHHHhccHHHh
Confidence 368999999999999998888887765 68888888776 343 257999876321 11223444555555666
Q ss_pred cCC---cEEEEEe
Q psy890 111 KPG---GRFLCLE 120 (131)
Q Consensus 111 ~p~---G~l~~~~ 120 (131)
|.- |++.+.-
T Consensus 248 kg~~~aGyfgiT~ 260 (354)
T COG1568 248 KGEGCAGYFGITR 260 (354)
T ss_pred cCCCccceEeeee
Confidence 655 6666643
No 357
>PRK08324 short chain dehydrogenase; Validated
Probab=84.33 E-value=19 Score=28.51 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=59.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.. .+.+++.+|.++.......+.+.... ++.++..|+.+..
T Consensus 425 vLVTG-asggIG~~la~~L~~---------~Ga~Vvl~~r~~~~~~~~~~~l~~~~-------~v~~v~~Dvtd~~~v~~ 487 (681)
T PRK08324 425 ALVTG-AAGGIGKATAKRLAA---------EGACVVLADLDEEAAEAAAAELGGPD-------RALGVACDVTDEAAVQA 487 (681)
T ss_pred EEEec-CCCHHHHHHHHHHHH---------CcCEEEEEeCCHHHHHHHHHHHhccC-------cEEEEEecCCCHHHHHH
Confidence 44444 355666666665531 25689999999877666555443321 6777777765532
Q ss_pred -C-----CCCCeeEEEEccccccccC-------------------HHHHHHHHHHhccC---CcEEEEEe
Q psy890 79 -I-----ESDSYSAYTIAFGIRNVTR-------------------IDKALSEAYRVLKP---GGRFLCLE 120 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---~G~l~~~~ 120 (131)
+ ..+.+|+|+.+.+...... ....++.+.+.+++ +|.++++.
T Consensus 488 ~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 488 AFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1 1236899988766432110 23345566666665 57777654
No 358
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.85 E-value=11 Score=26.09 Aligned_cols=87 Identities=11% Similarity=-0.046 Sum_probs=46.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+|.-+|+ |.....++..+.. .+.+++++|.+++..+.+.+. + .+.....+...
T Consensus 1 m~I~IIG~--G~mG~sla~~L~~---------~g~~V~~~d~~~~~~~~a~~~----g-------~~~~~~~~~~~---- 54 (279)
T PRK07417 1 MKIGIVGL--GLIGGSLGLDLRS---------LGHTVYGVSRRESTCERAIER----G-------LVDEASTDLSL---- 54 (279)
T ss_pred CeEEEEee--cHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHC----C-------CcccccCCHhH----
Confidence 45666665 4455555554421 145899999998777766532 1 11111111110
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
-...|+|+..-... .....+.++...++++.++
T Consensus 55 ~~~aDlVilavp~~---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 55 LKDCDLVILALPIG---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred hcCCCEEEEcCCHH---HHHHHHHHHHHhCCCCcEE
Confidence 13468887754322 2234566777777766444
No 359
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.75 E-value=12 Score=25.73 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C----CC
Q psy890 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I----ES 81 (131)
Q Consensus 11 G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~ 81 (131)
|.+...+++.+. .+.+++.++.+++.++...+.+...+ .++.++..|+.+.. + ..
T Consensus 11 ~gIG~~la~~l~----------~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 11 GGIGQAIARRVG----------AGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred ChHHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 467777877764 25789999988776665555444322 15677777876532 1 12
Q ss_pred CCeeEEEEccccccc-cCH-----------HHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNV-TRI-----------DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~-~~~-----------~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+|+++.+.+.... .++ -..++.+.+.++++|.++++
T Consensus 75 g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 75 GPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred CCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 468999887765322 111 22345555666666655443
No 360
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.78 E-value=12 Score=25.17 Aligned_cols=73 Identities=14% Similarity=-0.034 Sum_probs=45.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.. .+.++..++.+++.++...+... . .++.++..|+.+..
T Consensus 4 vlItG-asg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~-~-------~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 4 IFITG-AASGIGRATALLFAA---------EGWRVGAYDINEAGLAALAAELG-A-------GNAWTGALDVTDRAAWDA 65 (260)
T ss_pred EEEeC-CCchHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHHhc-C-------CceEEEEecCCCHHHHHH
Confidence 44444 456667777666531 25689999988876666544433 1 16788888876532
Q ss_pred -CC------CCCeeEEEEcccc
Q psy890 79 -IE------SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~------~~~~D~i~~~~~l 93 (131)
+. .+++|+++.+.+.
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 66 ALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHcCCCCCEEEECCCC
Confidence 11 3468999887654
No 361
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.72 E-value=8.8 Score=27.03 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=49.5
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEeccccc-C
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEE-L 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~-~ 77 (131)
||=.|+ |.|..+..+++.. +. ++++++.+++-.+.+++.+.. . .+ .....++.+ +
T Consensus 158 VlI~ga~g~vG~~aiqlAk~~------------G~~~Vi~~~~s~~~~~~~~~~lGa---~-----~vi~~~~~~~~~~i 217 (345)
T cd08293 158 MVVSGAAGACGSLAGQIGRLL------------GCSRVVGICGSDEKCQLLKSELGF---D-----AAINYKTDNVAERL 217 (345)
T ss_pred EEEECCCcHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHhcCC---c-----EEEECCCCCHHHHH
Confidence 444443 4556666666664 44 799998888766665543321 1 11 111111111 0
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+ . ..+.+..+.|+++|+++.+-
T Consensus 218 ~~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 218 RELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 112246899976432 1 12467788899999988653
No 362
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=82.32 E-value=11 Score=25.14 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C-----CC-CCeeEEEEccccccc----c
Q psy890 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-----ES-DSYSAYTIAFGIRNV----T 97 (131)
Q Consensus 33 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~-~~~D~i~~~~~l~~~----~ 97 (131)
.+.+|+.++.+.+.+....+.+.... ...++..|+.+.. + .. +.+|+++.+...... .
T Consensus 19 ~Ga~V~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~ 91 (241)
T PF13561_consen 19 EGANVILTDRNEEKLADALEELAKEY-------GAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPPSNVEK 91 (241)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHT-------TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSS
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHHc-------CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccccccCCC
Confidence 37899999999988655555554432 2335788876432 0 12 779988875443222 1
Q ss_pred --------C-----------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 98 --------R-----------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 98 --------~-----------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+ .....+.+.+.|+++|.++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 92 PLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp SGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred ChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 0 234456666788888888776544
No 363
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.81 E-value=14 Score=26.38 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=50.8
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc-C-
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE-L- 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~- 77 (131)
||=.|+ +.|..+..+++.. +.++++++.+++-.+.+++.+ +... -+..... +..+ .
T Consensus 162 VlV~GaaG~vG~~aiqlAk~~------------G~~Vi~~~~~~~k~~~~~~~l---Ga~~----vi~~~~~~~~~~~i~ 222 (348)
T PLN03154 162 VFVSAASGAVGQLVGQLAKLH------------GCYVVGSAGSSQKVDLLKNKL---GFDE----AFNYKEEPDLDAALK 222 (348)
T ss_pred EEEecCccHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHHhc---CCCE----EEECCCcccHHHHHH
Confidence 444554 3556666666664 467889988887666554322 2110 1111101 1111 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+-.-+ ...+....+.|+++|+++++-
T Consensus 223 ~~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 223 RYFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred HHCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 111246899876433 135677888999999988753
No 364
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.74 E-value=14 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=23.7
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+|+..---. +....+..+...+++++.++...
T Consensus 71 ~~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 71 PPCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEec
Confidence 4689987742211 34556777788888888876643
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.57 E-value=7.4 Score=28.73 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=42.0
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|..+..+++.+.. .+..++.+|.+++.++..++... .+.++.+|..+.. ..-..
T Consensus 237 iG~G~~g~~l~~~L~~---------~~~~v~vid~~~~~~~~~~~~~~----------~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 237 VGGGNIGYYLAKLLEK---------EGYSVKLIERDPERAEELAEELP----------NTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred ECCCHHHHHHHHHHHh---------CCCeEEEEECCHHHHHHHHHHCC----------CCeEEECCCCCHHHHHhcCCcc
Confidence 5668898888888752 25689999999988877665431 4556666655431 12245
Q ss_pred eeEEEEc
Q psy890 84 YSAYTIA 90 (131)
Q Consensus 84 ~D~i~~~ 90 (131)
+|.|++.
T Consensus 298 a~~vi~~ 304 (453)
T PRK09496 298 ADAFIAL 304 (453)
T ss_pred CCEEEEC
Confidence 7777653
No 366
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=81.55 E-value=15 Score=25.38 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--- 78 (131)
|+.+|||-=.-...+- .+ ...+++=+|. ++.++.-++.++..+... ..+..++..|+.. +.
T Consensus 85 vV~LGaGlDTr~~Rl~--~~----------~~~~~~EvD~-P~v~~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 85 VVILGAGLDTRAYRLP--WP----------DGTRVFEVDQ-PAVLAFKEKVLAELGAEP--PAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred EEEeCCccccHHHhcC--CC----------CCCeEEECCC-hHHHHHHHHHHHHcCCCC--CCceEEeccCchhhHHHHH
Confidence 6788887633333221 11 1345555554 334444444555422111 1377888888762 11
Q ss_pred ----CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 79 ----IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+..+.--++++-.++.+++ ....++..+.+...||+.+++
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2223345666666677776 456788888888778888866
No 367
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=80.65 E-value=7.3 Score=27.78 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEE
Q psy890 42 INRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 42 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~ 117 (131)
..+..++.++.+.. ++.++.+|+.+.- -+.+..|.++..-+-.|++ ..+..+.++.+-+.+|..++
T Consensus 294 l~~~~YEsir~n~~----------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 294 LDEGVYESIRQNLR----------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred hchhhHHHHHhhhh----------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 45566666666553 6888888877753 3557899999988888887 46789999999999999998
Q ss_pred EE
Q psy890 118 CL 119 (131)
Q Consensus 118 ~~ 119 (131)
+-
T Consensus 364 fR 365 (414)
T COG5379 364 FR 365 (414)
T ss_pred Ee
Confidence 84
No 368
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.49 E-value=8.5 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=38.9
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
+++++|.++.-.+.+++. +... -+.....+..+ . . .....+|+|+-.-+ . ...+....+.+++
T Consensus 203 ~Vi~~~~~~~~~~~~~~~----Ga~~----~i~~~~~~~~~~i~~~~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~ 268 (358)
T TIGR03451 203 KIIAVDIDDRKLEWAREF----GATH----TVNSSGTDPVEAIRALTGGFGADVVIDAVG-----R-PETYKQAFYARDL 268 (358)
T ss_pred eEEEEcCCHHHHHHHHHc----CCce----EEcCCCcCHHHHHHHHhCCCCCCEEEECCC-----C-HHHHHHHHHHhcc
Confidence 599999888777766432 2110 01111111100 0 0 12235898876432 1 2346677788999
Q ss_pred CcEEEEEec
Q psy890 113 GGRFLCLEF 121 (131)
Q Consensus 113 ~G~l~~~~~ 121 (131)
+|+++++-.
T Consensus 269 ~G~iv~~G~ 277 (358)
T TIGR03451 269 AGTVVLVGV 277 (358)
T ss_pred CCEEEEECC
Confidence 999987643
No 369
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.38 E-value=4.8 Score=27.84 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=35.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-+|+|......... +..+.++|+++..++.+.+++...
T Consensus 225 iVlDpf~GsGtt~~aa~~~-------------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 225 IVLDPFAGSGTTGIAAKNL-------------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred EEeecCCCCChHHHHHHHc-------------CCceEEEecCHHHHHHHHHHHHhh
Confidence 6899999999877655443 678999999999999999998754
No 370
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=80.26 E-value=17 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+..- -..+.+..++.+.+.++++..+++..=
T Consensus 66 ~~~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 66 GPADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred CCCCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 4689998742 223678889999999999998877653
No 371
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.25 E-value=15 Score=24.78 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=42.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.+ .+.+|+.++.+++-.+...+.. + .++.++..|+.+..
T Consensus 9 vlItG-as~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~~~~~~~ 69 (261)
T PRK08265 9 AIVTG-GATLIGAAVARALVA---------AGARVAIVDIDADNGAAVAASL---G------ERARFIATDITDDAAIER 69 (261)
T ss_pred EEEEC-CCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHh---C------CeeEEEEecCCCHHHHHH
Confidence 34344 556677777666531 2568999998876544443332 1 15777888876542
Q ss_pred -CC-----CCCeeEEEEcccc
Q psy890 79 -IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l 93 (131)
+. .+..|+++.+.+.
T Consensus 70 ~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 70 AVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 11 1467988876553
No 372
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=80.20 E-value=24 Score=26.86 Aligned_cols=108 Identities=7% Similarity=-0.012 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPI- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~- 79 (131)
.+.|..||+|.......+... . + .....+++.+....+...++.+....+... +.......| +....+
T Consensus 220 ~~~Dp~~Gsg~~L~~~~~~~~--~--~---qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~---~t~~~~~~dtl~~~d~~ 289 (501)
T TIGR00497 220 DVYDMACGSGSLLLQVIKVLG--E--K---TSLVSYYGQEINHTTYNLCRMNMILHNIDY---ANFNIINADTLTTKEWE 289 (501)
T ss_pred cccccccchHHHHHHHHHHhc--c--c---ccceeEEEEeCchHHHHHHHHHHHHcCCCc---cccCcccCCcCCCcccc
Confidence 467888999987655443321 0 0 024679999999999999988754433211 011111222 111111
Q ss_pred CCCCeeEEEEcccc---------------------cccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGI---------------------RNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l---------------------~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+||.|+++-.. |.++ .-..++..+...|++||+..++
T Consensus 290 ~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 290 NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 22346666653211 1111 1246788899999999985544
No 373
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.25 E-value=11 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+|+++....- ...+....+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 568988764221 24677788899999998765
No 374
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=78.89 E-value=3.5 Score=26.11 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
-|||+|=|.|+.--.+.+.++ ..+++++|-.-.+-.. ..++ .-.++.+|+.+. +
T Consensus 31 ~VlElGLGNGRTydHLRe~~p-----------~R~I~vfDR~l~~hp~--------~~P~----~~~~ilGdi~~tl~~~ 87 (160)
T PF12692_consen 31 PVLELGLGNGRTYDHLREIFP-----------DRRIYVFDRALACHPS--------STPP----EEDLILGDIRETLPAL 87 (160)
T ss_dssp -EEEE--TTSHHHHHHHHH-------------SS-EEEEESS--S-GG--------G-------GGGEEES-HHHHHHHH
T ss_pred ceEEeccCCCccHHHHHHhCC-----------CCeEEEEeeecccCCC--------CCCc----hHheeeccHHHHhHHH
Confidence 389999999998887877775 7889999963311111 1111 345666776553 1
Q ss_pred -CCCCCeeEEEEccccccccCHH----HHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRID----KALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~----~~l~~~~~~L~p~G~l~~ 118 (131)
.-..+.-++..-.+.++-.+-. ..-.-+..+|.|||+++-
T Consensus 88 ~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 88 ARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1233455555554444332211 122335577899999864
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.67 E-value=18 Score=24.56 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=42.4
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C--
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-- 79 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 79 (131)
-.++|.+...+++.+.. .+.+|+.++.+++......+.+.... .++.++..|+.+.. +
T Consensus 15 tGasggIG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 15 VGGTSGINLGIAQAFAR---------AGANVAVASRSQEKVDAAVAQLQQAG------PEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred ECCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEECCCCCHHHHHHHHHH
Confidence 34566677766666531 25679999988776655544444322 15667777876432 1
Q ss_pred ---CCCCeeEEEEccc
Q psy890 80 ---ESDSYSAYTIAFG 92 (131)
Q Consensus 80 ---~~~~~D~i~~~~~ 92 (131)
....+|+++.+..
T Consensus 80 ~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 80 IADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1245799987543
No 376
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.51 E-value=15 Score=24.79 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|++|-.|+++| +...+++.+.+ .+.+++.++.+++.++...+.+...+ ++.++..|+.+..
T Consensus 1 m~vlItGas~g-IG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~Dv~d~~~~ 63 (259)
T PRK08340 1 MNVLVTASSRG-IGFNVARELLK---------KGARVVISSRNEENLEKALKELKEYG-------EVYAVKADLSDKDDL 63 (259)
T ss_pred CeEEEEcCCcH-HHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEcCCCCHHHH
Confidence 67777776554 55556555431 25789999998877776666554432 5667778866531
Q ss_pred ---C-----CCCCeeEEEEcccc
Q psy890 79 ---I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 ---~-----~~~~~D~i~~~~~l 93 (131)
+ ..+.+|+++.+.+.
T Consensus 64 ~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 64 KNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 12468999887654
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=78.00 E-value=13 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+|+|+..- -..+....+..+.+.+.+++.+++..
T Consensus 65 ~~~~D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 65 AGPYDLVIVAV---KAYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp HSTESEEEE-S---SGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred cCCCcEEEEEe---cccchHHHHHHHhhccCCCcEEEEEe
Confidence 46799998742 22355678888999999998877653
No 378
>PRK08655 prephenate dehydrogenase; Provisional
Probab=77.62 E-value=25 Score=26.28 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=22.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAML 47 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 47 (131)
|+|.-+| |.|.....++..+.. .+.+++++|.+++..
T Consensus 1 MkI~IIG-G~G~mG~slA~~L~~---------~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 1 MKISIIG-GTGGLGKWFARFLKE---------KGFEVIVTGRDPKKG 37 (437)
T ss_pred CEEEEEe-cCCHHHHHHHHHHHH---------CCCEEEEEECChHHH
Confidence 5677776 345555555555431 145789999887554
No 379
>KOG0023|consensus
Probab=77.56 E-value=17 Score=26.30 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=48.4
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEE-ecccccCC--CCCCCee
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL-EANAEELP--IESDSYS 85 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--~~~~~~D 85 (131)
|-|+.+..+++.. +.+|+++|-++.--+.+-+.+-... -+.+. ..|..+-. ..+.-.|
T Consensus 192 GLGh~aVq~AKAM------------G~rV~vis~~~~kkeea~~~LGAd~-------fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 192 GLGHMAVQYAKAM------------GMRVTVISTSSKKKEEAIKSLGADV-------FVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred ccchHHHHHHHHh------------CcEEEEEeCCchhHHHHHHhcCcce-------eEEecCCHHHHHHHHHhhcCcce
Confidence 4788888888886 5899999988755555444332111 01111 11111100 1122234
Q ss_pred EEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 86 AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 86 ~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
-+... ....+..+.++||++|.++++-..
T Consensus 253 ~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 253 TVSNL--------AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred eeeec--------cccchHHHHHHhhcCCEEEEEeCc
Confidence 44322 233467788999999999986543
No 380
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.39 E-value=14 Score=25.97 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=49.2
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-- 77 (131)
.||-.|+|. |.....+++.. +.+++++..+++..+.+++. +... -+.....+..+ +
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~------------g~~v~~~~~s~~~~~~~~~~----g~~~----v~~~~~~~~~~~l~~ 221 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKAR------------GARVIVVDIDDERLEFAREL----GADD----TINVGDEDVAARLRE 221 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEECCCHHHHHHHHHh----CCCE----EecCcccCHHHHHHH
Confidence 355556542 45555555553 56788887777766655332 1110 11111111101 1
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+...+|+++....- ...+..+.+.|+++|.++...
T Consensus 222 ~~~~~~vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 222 LTDGEGADVVIDATGN------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred HhCCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 0123458999765321 234677888899999987653
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.18 E-value=18 Score=23.93 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=46.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.| ++|.+...+++.+.. .+.++++++.+++......+.+...+ .++.++..|+.+..
T Consensus 10 vlItG-a~g~iG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 10 ALVTG-AARGLGAAFAEALAE---------AGATVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQR 73 (250)
T ss_pred EEEeC-CCChHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHH
Confidence 44344 466677777766531 25678888888776666555554322 16788888876532
Q ss_pred -CC-----CCCeeEEEEcccc
Q psy890 79 -IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l 93 (131)
+. -...|.++.+.+.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 11 1468998876654
No 382
>KOG2912|consensus
Probab=76.38 E-value=4.9 Score=28.90 Aligned_cols=55 Identities=4% Similarity=-0.036 Sum_probs=38.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-------CCCCCeeEEEEccc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-------IESDSYSAYTIAFG 92 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D~i~~~~~ 92 (131)
+-.+.++|++.-.+..+.++++..+.+. .+..+.....+.- .++..||.+.|+-.
T Consensus 126 n~~f~~teidd~s~~~a~snV~qn~lss----~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 126 NWYFLATEIDDMSFNYAKSNVEQNNLSS----LIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred cceeeeeeccccccchhhcccccccccc----ceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence 4568999999999999999998887764 6666655432211 22345888888543
No 383
>PRK09072 short chain dehydrogenase; Provisional
Probab=75.57 E-value=22 Score=23.98 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=45.3
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.| |+|.+...+++.+.+ .+.+|++++.+++......+.+... .++.++..|+.+..
T Consensus 8 vlItG-~s~~iG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~ 70 (263)
T PRK09072 8 VLLTG-ASGGIGQALAEALAA---------AGARLLLVGRNAEKLEALAARLPYP-------GRHRWVVADLTSEAGREA 70 (263)
T ss_pred EEEEC-CCchHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHhcC-------CceEEEEccCCCHHHHHH
Confidence 33344 455666666666531 2578999998887766655544221 16788888876542
Q ss_pred -C----CCCCeeEEEEcccc
Q psy890 79 -I----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~----~~~~~D~i~~~~~l 93 (131)
+ .....|.++.+.+.
T Consensus 71 ~~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 71 VLARAREMGGINVLINNAGV 90 (263)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 0 12457999887654
No 384
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=75.02 E-value=21 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=22.5
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+|+|+-..+ ....+.+..+.++++|.++.+-
T Consensus 247 ~~D~vid~~g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 247 TMDYIIDTVS------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhcCCcEEEEeC
Confidence 4788876433 1235677888999999988764
No 385
>KOG1098|consensus
Probab=74.82 E-value=3 Score=32.51 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=27.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
.+||+||.+|.|..-.++.++ .+.-++|+|+-+
T Consensus 47 ~vlDLcaAPG~W~QVA~q~~p----------v~slivGvDl~p 79 (780)
T KOG1098|consen 47 VVLDLCAAPGGWLQVASQSMP----------VGSLIVGVDLVP 79 (780)
T ss_pred hheeeccCCcHHHHHHHHhCC----------CCceEEEeeeee
Confidence 579999999999988888876 467799999855
No 386
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=74.65 E-value=13 Score=21.06 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=46.0
Q ss_pred EEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCc
Q psy890 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 114 (131)
Q Consensus 37 ~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G 114 (131)
+..+|-++......++.+...+.. .+. ...+..+. ......+|+|++...+.. .+....++++++.- ++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-----~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~-~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-----EVT-TASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQIN-PSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-----EEE-EESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHT-TTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-----EEE-EECCHHHHHHHhcccCceEEEEEeeecc-cccccccccccccc-ccc
Confidence 456788888888888887754421 111 22222221 123456999999876665 35567777776665 777
Q ss_pred EEEEEe
Q psy890 115 RFLCLE 120 (131)
Q Consensus 115 ~l~~~~ 120 (131)
.++++.
T Consensus 73 ~ii~~t 78 (112)
T PF00072_consen 73 PIIVVT 78 (112)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 666654
No 387
>PLN00203 glutamyl-tRNA reductase
Probab=74.04 E-value=30 Score=26.63 Aligned_cols=103 Identities=8% Similarity=0.040 Sum_probs=50.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
|+=+|+ |..+..+++.+... +..++++++.+.+-.....+.+. +. .+.+...+ +....-.
T Consensus 269 VlVIGA--G~mG~~~a~~L~~~--------G~~~V~V~nRs~era~~La~~~~--g~------~i~~~~~~--dl~~al~ 328 (519)
T PLN00203 269 VLVIGA--GKMGKLLVKHLVSK--------GCTKMVVVNRSEERVAALREEFP--DV------EIIYKPLD--EMLACAA 328 (519)
T ss_pred EEEEeC--HHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHhC--CC------ceEeecHh--hHHHHHh
Confidence 455555 66777776665411 23579999998866655554432 10 22222221 1111124
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccC-CcEEEEEeccCCC
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLCLEFSHVN 125 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-~G~l~~~~~~~~~ 125 (131)
..|+|++.-.-...--....++.+.+.-+. +..++++|...|-
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 579998864322211122333333221111 2346777888764
No 388
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.03 E-value=23 Score=24.82 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=43.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|.-||+ |.....++..+.... ...+++++|.+++..+.+++ .+.. .. ...+..+. -
T Consensus 8 ~I~IIG~--G~mG~sla~~l~~~g-------~~~~V~~~dr~~~~~~~a~~----~g~~------~~-~~~~~~~~---~ 64 (307)
T PRK07502 8 RVALIGI--GLIGSSLARAIRRLG-------LAGEIVGADRSAETRARARE----LGLG------DR-VTTSAAEA---V 64 (307)
T ss_pred EEEEEee--CHHHHHHHHHHHhcC-------CCcEEEEEECCHHHHHHHHh----CCCC------ce-ecCCHHHH---h
Confidence 4555665 445555555443100 12479999999877665543 1211 11 11111111 1
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
...|+|+..-... .....+.++...++++..++
T Consensus 65 ~~aDvViiavp~~---~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 65 KGADLVILCVPVG---ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred cCCCEEEECCCHH---HHHHHHHHHHhhCCCCCEEE
Confidence 3468887654322 12344555666667766543
No 389
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.39 E-value=30 Score=24.07 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=46.6
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEeccccc-C-CCCCCCee
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEE-L-PIESDSYS 85 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~-~-~~~~~~~D 85 (131)
+.|.....+++.. +.++++++.+++-.+.+++ + +.. .+ .....+..+ . ......+|
T Consensus 155 ~vG~~aiqlA~~~------------G~~vi~~~~s~~~~~~l~~-~---Ga~-----~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 155 AVGSLVGQIAKIK------------GCKVIGCAGSDDKVAWLKE-L---GFD-----AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred HHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHH-c---CCC-----EEEeCCCccHHHHHHHHCCCCcE
Confidence 4555566666663 4678888888876666654 2 211 11 111111110 0 11224689
Q ss_pred EEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 86 AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 86 ~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+|+-..+ ...+....+.|+++|.++.+
T Consensus 214 ~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 8876432 13467788889999998765
No 390
>PRK06223 malate dehydrogenase; Reviewed
Probab=71.74 E-value=32 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=21.4
Q ss_pred Cceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHH
Q psy890 1 MYILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD 48 (131)
Q Consensus 1 ~~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 48 (131)
|+|--+|+|. |......+...+ .. +++.+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~----------~~-ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE----------LG-DVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----------Ce-EEEEEECCCchhH
Confidence 4566778765 444333322211 13 8999999887653
No 391
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.72 E-value=28 Score=23.52 Aligned_cols=75 Identities=16% Similarity=0.036 Sum_probs=40.6
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|-.|+++ +.+...+++.+-+ .+.+++.++.++...+...+...... ...++..|+.+..
T Consensus 13 ~lItGas~g~GIG~a~a~~la~---------~G~~v~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~ 76 (258)
T PRK07533 13 GLVVGIANEQSIAWGCARAFRA---------LGAELAVTYLNDKARPYVEPLAEELD-------APIFLPLDVREPGQLE 76 (258)
T ss_pred EEEECCCCCCcHHHHHHHHHHH---------cCCEEEEEeCChhhHHHHHHHHHhhc-------cceEEecCcCCHHHHH
Confidence 45566655 2566666665531 25678888877543332222222211 3345667766532
Q ss_pred -------CCCCCeeEEEEcccc
Q psy890 79 -------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l 93 (131)
...+..|+++.+.+.
T Consensus 77 ~~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 77 AVFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHHcCCCCEEEEcCcc
Confidence 012468999987654
No 392
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.63 E-value=31 Score=24.02 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=47.6
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEecccccCCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~ 79 (131)
.||-.|+| -|..+..+++.. +.++++++.+++..+.+++ .. .. .+ .....+... .
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~------------G~~v~~~~~~~~~~~~~~~-~g---~~-----~~~~~~~~~~~~-~- 221 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAM------------GFETVAITRSPDKRELARK-LG---AD-----EVVDSGAELDEQ-A- 221 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH-hC---Cc-----EEeccCCcchHH-h-
Confidence 35555664 444444444442 4678999988877766633 21 10 11 100000000 0
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+|+++....- ...+..+.+.|+++|.++.+.
T Consensus 222 ~~~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 222 AAGGADVILVTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ccCCCCEEEECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 12358888764221 235677788899999887653
No 393
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=71.54 E-value=25 Score=23.70 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=42.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH-HhhhccCCCCCCCceeEEecccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ-RARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
|.++=+|| |.+...+++.+.+ .+-.++.+|.+++.++.... .. ....+.+|..+..
T Consensus 1 m~iiIiG~--G~vG~~va~~L~~---------~g~~Vv~Id~d~~~~~~~~~~~~-----------~~~~v~gd~t~~~~ 58 (225)
T COG0569 1 MKIIIIGA--GRVGRSVARELSE---------EGHNVVLIDRDEERVEEFLADEL-----------DTHVVIGDATDEDV 58 (225)
T ss_pred CEEEEECC--cHHHHHHHHHHHh---------CCCceEEEEcCHHHHHHHhhhhc-----------ceEEEEecCCCHHH
Confidence 55666666 5588888887752 24689999999977766332 22 3555666655432
Q ss_pred ---CCCCCeeEEEEc
Q psy890 79 ---IESDSYSAYTIA 90 (131)
Q Consensus 79 ---~~~~~~D~i~~~ 90 (131)
..-..+|++++.
T Consensus 59 L~~agi~~aD~vva~ 73 (225)
T COG0569 59 LEEAGIDDADAVVAA 73 (225)
T ss_pred HHhcCCCcCCEEEEe
Confidence 223467887763
No 394
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.47 E-value=28 Score=24.61 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q psy890 101 KALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 101 ~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+.+..+.|+++|.++++-.
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 467788899999999988643
No 395
>KOG2811|consensus
Probab=71.39 E-value=6.9 Score=28.62 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=18.8
Q ss_pred ceeeeecccchhhHHHhhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVD 22 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~ 22 (131)
..+|+|||-|.++..+...++
T Consensus 185 ~~vEFGAGrg~Ls~~vs~~l~ 205 (420)
T KOG2811|consen 185 CFVEFGAGRGELSRWVSDCLQ 205 (420)
T ss_pred eEEEecCCchHHHHHHHHHhc
Confidence 368999999999999999886
No 396
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=71.25 E-value=32 Score=26.10 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=46.8
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEE
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 88 (131)
|.|.....++..+.+ .+.+|++.|.+++..+...+.....+. .+. ...+..+....-...|+|+
T Consensus 8 GLG~MG~~lA~nL~~---------~G~~V~v~dr~~~~~~~l~~~~~~~g~------~i~-~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 8 GLAVMGQNLALNIAS---------RGFKISVYNRTYEKTEEFVKKAKEGNT------RVK-GYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred eEhHHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHhhhhcCC------cce-ecCCHHHHHhcCCCCCEEE
Confidence 455566666555431 256899999999888777654222121 111 1122222211111346665
Q ss_pred EccccccccCHHHHHHHHHHhccCCcEE
Q psy890 89 IAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 89 ~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
.. +..-...+..+.++...|++|-++
T Consensus 72 l~--v~~~~~v~~vi~~l~~~L~~g~iI 97 (470)
T PTZ00142 72 LL--IKAGEAVDETIDNLLPLLEKGDII 97 (470)
T ss_pred EE--eCChHHHHHHHHHHHhhCCCCCEE
Confidence 53 112223456667777888877654
No 397
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.93 E-value=22 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=23.9
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+++-.-+ -...+.+..+.++++|+++++-.
T Consensus 186 ~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 35898876432 13456778899999999987653
No 398
>PRK07326 short chain dehydrogenase; Provisional
Probab=70.88 E-value=27 Score=22.97 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=46.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++|-.| |+|.+...+++.+.+ .+.++++++.++.......+.+.... ++.++..|+.+..
T Consensus 8 ~ilItG-atg~iG~~la~~l~~---------~g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~ 70 (237)
T PRK07326 8 VALITG-GSKGIGFAIAEALLA---------EGYKVAITARDQKELEEAAAELNNKG-------NVLGLAADVRDEADVQ 70 (237)
T ss_pred EEEEEC-CCCcHHHHHHHHHHH---------CCCEEEEeeCCHHHHHHHHHHHhccC-------cEEEEEccCCCHHHHH
Confidence 355555 577788878777642 25679999988766655544443222 6777888866531
Q ss_pred --CC-----CCCeeEEEEcccc
Q psy890 79 --IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 --~~-----~~~~D~i~~~~~l 93 (131)
+. ...+|.|+.+...
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 71 RAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 11 1367888876543
No 399
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=70.76 E-value=26 Score=27.45 Aligned_cols=26 Identities=0% Similarity=-0.075 Sum_probs=14.7
Q ss_pred eeEEecccccCCCCCCCeeEEEEccc
Q psy890 67 LRFLEANAEELPIESDSYSAYTIAFG 92 (131)
Q Consensus 67 ~~~~~~d~~~~~~~~~~~D~i~~~~~ 92 (131)
++....+..+.+-..+.+|+|++...
T Consensus 538 veV~~~~Vsev~s~~~~aDIIVtt~~ 563 (602)
T PRK09548 538 IIMDSCAVNDYKGKLETIDIIVCSKH 563 (602)
T ss_pred eEEEEechHhCcccCCCCCEEEEccc
Confidence 44555666555433445777777543
No 400
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.46 E-value=29 Score=23.20 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=46.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.| |+|.+...+++.+.+ .+.+|+.++.+++..+...+.++..+ .++.++..|+.+..
T Consensus 13 vlItG-a~g~iG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 13 ALVTG-SSQGIGYALAEGLAQ---------AGAEVILNGRDPAKLAAAAESLKGQG------LSAHALAFDVTDHDAVRA 76 (255)
T ss_pred EEEEC-CcchHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHHhcC------ceEEEEEccCCCHHHHHH
Confidence 34344 567777777776542 25689999988877666555554432 15777777876532
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ .....|.++.+.+.
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1 12457888887654
No 401
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=70.37 E-value=35 Score=25.47 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=21.4
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
..+|+|+++-+-.+.-=. -..+.+.+++.-.++++|...|-
T Consensus 237 ~~~DvVissTsa~~~ii~---~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 237 AEADVVISSTSAPHPIIT---REMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred hhCCEEEEecCCCccccC---HHHHHHHHhcccCeEEEEecCCC
Confidence 468999997543222111 12233333332227788888764
No 402
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.30 E-value=37 Score=24.36 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=39.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc-cC-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE-EL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+++++|.+++-.+.+++. +... -+.....+.. .. ....+.+|+|+-.-+- ...+....+.++++
T Consensus 218 ~Vi~~~~~~~r~~~a~~~----Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid~~G~------~~~~~~~~~~l~~~ 283 (371)
T cd08281 218 QVVAVDLNEDKLALAREL----GATA----TVNAGDPNAVEQVRELTGGGVDYAFEMAGS------VPALETAYEITRRG 283 (371)
T ss_pred cEEEEcCCHHHHHHHHHc----CCce----EeCCCchhHHHHHHHHhCCCCCEEEECCCC------hHHHHHHHHHHhcC
Confidence 699999988877766532 2110 0111111110 01 0112368988764321 23567778889999
Q ss_pred cEEEEEec
Q psy890 114 GRFLCLEF 121 (131)
Q Consensus 114 G~l~~~~~ 121 (131)
|.++.+-.
T Consensus 284 G~iv~~G~ 291 (371)
T cd08281 284 GTTVTAGL 291 (371)
T ss_pred CEEEEEcc
Confidence 99887643
No 403
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.05 E-value=3.4 Score=27.11 Aligned_cols=21 Identities=48% Similarity=0.929 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhccCCcEEEEE
Q psy890 99 IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 99 ~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+.++.++|||+|.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 567899999999999998764
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=69.80 E-value=43 Score=25.17 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCeeEEEEcccc-ccc-cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGI-RNV-TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l-~~~-~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..||+|+.-..- .+. ......+..+.+.++|..++++++..
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 569999885443 222 24456678888888999998887743
No 405
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=69.58 E-value=31 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+++.... ....+..+.+.|+++|.++.+.
T Consensus 226 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 226 RGADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 35899976421 1335677788899999987653
No 406
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.96 E-value=36 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|+++.... ....+....+.|+++|+++.+.
T Consensus 224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 356899986422 1245677788899999987654
No 407
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=68.95 E-value=5 Score=23.28 Aligned_cols=17 Identities=6% Similarity=-0.217 Sum_probs=12.2
Q ss_pred eeeecccchhhHHHhhh
Q psy890 4 LFYLVFPGDIAFRFLNY 20 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~ 20 (131)
+|||||.|..-....+.
T Consensus 7 IDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRS 23 (124)
T ss_pred cccccCCCcchhhhhhc
Confidence 69999999765444443
No 408
>PRK07109 short chain dehydrogenase; Provisional
Probab=68.87 E-value=39 Score=24.04 Aligned_cols=75 Identities=7% Similarity=-0.018 Sum_probs=46.2
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C--
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
+|=.| |+|.+...+++.+-. .+.+++.++.+++.++...+.+...+ .++.++..|+.+.. .
T Consensus 11 vlITG-as~gIG~~la~~la~---------~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 11 VVITG-ASAGVGRATARAFAR---------RGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVADAEAVQA 74 (334)
T ss_pred EEEEC-CCCHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCCHHHHHH
Confidence 44444 455566666665431 25689999988877776666555433 16777888876532 0
Q ss_pred -------CCCCeeEEEEcccc
Q psy890 80 -------ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 -------~~~~~D~i~~~~~l 93 (131)
.-+.+|+++.+.+.
T Consensus 75 ~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 75 AADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHCCCCCEEEECCCc
Confidence 12468999887654
No 409
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.76 E-value=36 Score=23.61 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+|+|+..-- .......+.++...+.++..++..
T Consensus 67 ~~~d~vilavk---~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 67 GPFDLVILAVK---AYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred CCCCEEEEEec---ccCHHHHHHHHHhhcCCCCEEEEe
Confidence 56888876432 224567778888888887776654
No 410
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=68.70 E-value=16 Score=21.16 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=28.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (131)
.||-+|||..+....-+...+..... ...+++..|.+++.+.+
T Consensus 26 ~iLl~G~gD~Rhvl~Tl~~~~~~~~~-----~~l~~~l~D~~~~vlAR 68 (100)
T PF14737_consen 26 NILLLGCGDLRHVLKTLASLPRSYDG-----RKLHFTLNDINPEVLAR 68 (100)
T ss_pred eEEEecCccHHHHHHHHHhcccCccc-----ceeEEEEecCcHHHHHH
Confidence 57888998887755554444322211 25789999998866554
No 411
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=68.56 E-value=31 Score=24.66 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=51.5
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
||=.|+ |-|..+..+++.++ .+++++--+++-.+.+++.-... -+.+...|+.+. .
T Consensus 146 VLV~gaaGgVG~~aiQlAk~~G------------~~~v~~~~s~~k~~~~~~lGAd~--------vi~y~~~~~~~~v~~ 205 (326)
T COG0604 146 VLVHGAAGGVGSAAIQLAKALG------------ATVVAVVSSSEKLELLKELGADH--------VINYREEDFVEQVRE 205 (326)
T ss_pred EEEecCCchHHHHHHHHHHHcC------------CcEEEEecCHHHHHHHHhcCCCE--------EEcCCcccHHHHHHH
Confidence 444554 45566777788753 36666666665444333322111 123333332221 1
Q ss_pred C-CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 I-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. ....+|+|+..-+ ...+.+....|+++|.++.+-.
T Consensus 206 ~t~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 206 LTGGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HcCCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 2 2346999988654 3455667888999999887644
No 412
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=68.19 E-value=40 Score=23.85 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+.++++++.+++-.+.+++ .+.. .+ + +..+ ...+.+|+++..-.. ...+....+.|+++
T Consensus 189 G~~vi~~~~~~~~~~~a~~----~Ga~-----~v--i--~~~~--~~~~~~d~~i~~~~~------~~~~~~~~~~l~~~ 247 (329)
T TIGR02822 189 GATVHVMTRGAAARRLALA----LGAA-----SA--G--GAYD--TPPEPLDAAILFAPA------GGLVPPALEALDRG 247 (329)
T ss_pred CCeEEEEeCChHHHHHHHH----hCCc-----ee--c--cccc--cCcccceEEEECCCc------HHHHHHHHHhhCCC
Confidence 4578899988876666544 2211 11 1 1111 012347766543221 23678888999999
Q ss_pred cEEEEEec
Q psy890 114 GRFLCLEF 121 (131)
Q Consensus 114 G~l~~~~~ 121 (131)
|+++++-.
T Consensus 248 G~~v~~G~ 255 (329)
T TIGR02822 248 GVLAVAGI 255 (329)
T ss_pred cEEEEEec
Confidence 99987654
No 413
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=67.22 E-value=20 Score=20.21 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=30.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|+|.=+|||+....+.+.++ ...-+...-+++-.+..+++.....
T Consensus 4 LiiD~PPGTgD~~l~~~~~~~----------~~g~ivVTTPq~la~~dv~r~~~~~ 49 (81)
T PF10609_consen 4 LIIDLPPGTGDEHLTLMQYLP----------IDGAIVVTTPQELALADVRRAIDMF 49 (81)
T ss_dssp EEEE--SCSSSHHHHHHHHH------------SEEEEEE-CCC--HHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHhCC----------CCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 378999999999999999986 3456777777777777777665543
No 414
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.92 E-value=32 Score=24.17 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCe-EEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhc
Q psy890 34 APH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 110 (131)
Q Consensus 34 ~~~-~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 110 (131)
+.+ +++++.+++-.+.+++. +... -+.....+.... . .....+|+|+-..+ ....+....+.|
T Consensus 187 G~~~vi~~~~~~~~~~~~~~~----ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid~~g------~~~~~~~~~~~l 252 (339)
T cd08239 187 GAEDVIGVDPSPERLELAKAL----GADF----VINSGQDDVQEIRELTSGAGADVAIECSG------NTAARRLALEAV 252 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHh----CCCE----EEcCCcchHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHh
Confidence 345 89999888776666432 1110 011111111111 1 12236899975432 123456677889
Q ss_pred cCCcEEEEEe
Q psy890 111 KPGGRFLCLE 120 (131)
Q Consensus 111 ~p~G~l~~~~ 120 (131)
+++|.++++-
T Consensus 253 ~~~G~~v~~g 262 (339)
T cd08239 253 RPWGRLVLVG 262 (339)
T ss_pred hcCCEEEEEc
Confidence 9999998754
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=66.69 E-value=40 Score=23.33 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=51.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+|.-+|+|. ....++..+.. .+.+|+.++.+++.++..++. +.... .........-..+.. .
T Consensus 1 m~I~IiG~G~--~G~~~a~~L~~---------~g~~V~~~~r~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~~~~-~ 63 (304)
T PRK06522 1 MKIAILGAGA--IGGLFGAALAQ---------AGHDVTLVARRGAHLDALNEN----GLRLE-DGEITVPVLAADDPA-E 63 (304)
T ss_pred CEEEEECCCH--HHHHHHHHHHh---------CCCeEEEEECChHHHHHHHHc----CCccc-CCceeecccCCCChh-H
Confidence 6777787753 44444444321 145799999876665554432 11000 001110000001111 1
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+|+|+..--- .+....+.++...+.++..++...
T Consensus 64 ~~~~d~vila~k~---~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 64 LGPQDLVILAVKA---YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred cCCCCEEEEeccc---ccHHHHHHHHhhhcCCCCEEEEec
Confidence 1568988875332 245677888888888777766543
No 416
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.13 E-value=44 Score=23.63 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=48.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHH-HHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD-VGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
|+|.-+|+|. ....++..+-... ...++..+|.+++... .+........... .......|...
T Consensus 1 mkI~IIGaG~--VG~~~a~~l~~~g-------~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~----~~~i~~~d~~~--- 64 (308)
T cd05292 1 MKVAIVGAGF--VGSTTAYALLLRG-------LASEIVLVDINKAKAEGEAMDLAHGTPFVK----PVRIYAGDYAD--- 64 (308)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcC-------CCCEEEEEECCchhhhhHHHHHHccccccC----CeEEeeCCHHH---
Confidence 5677788754 4333333221000 1358999999886554 2222221111111 22333334322
Q ss_pred CCCCeeEEEEcccccccc--C-----------HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVT--R-----------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~--~-----------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....|+|+.......-+ + .....+++.+ ..|+|.++++
T Consensus 65 -l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~ 115 (308)
T cd05292 65 -CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVV 115 (308)
T ss_pred -hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 23468888865543222 1 1233333333 4588888775
No 417
>PRK08618 ornithine cyclodeaminase; Validated
Probab=66.07 E-value=36 Score=24.28 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEE-ecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL-EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
..++..++.+++..+...+.+.... .+.+. ..|.++. -...|+|++.-.-. +..+. +.++|
T Consensus 152 ~~~v~v~~r~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~aDiVi~aT~s~-----~p~i~---~~l~~ 213 (325)
T PRK08618 152 IERVRVYSRTFEKAYAFAQEIQSKF-------NTEIYVVNSADEA---IEEADIIVTVTNAK-----TPVFS---EKLKK 213 (325)
T ss_pred ccEEEEECCCHHHHHHHHHHHHHhc-------CCcEEEeCCHHHH---HhcCCEEEEccCCC-----CcchH---HhcCC
Confidence 5689999999877776666554321 12222 2222221 13479998754322 22222 56778
Q ss_pred CcEEEEE
Q psy890 113 GGRFLCL 119 (131)
Q Consensus 113 ~G~l~~~ 119 (131)
|--+..+
T Consensus 214 G~hV~~i 220 (325)
T PRK08618 214 GVHINAV 220 (325)
T ss_pred CcEEEec
Confidence 6665444
No 418
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=66.05 E-value=37 Score=23.31 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
..++++.|.++.....+.+. +.. ... ..+.... ..+|+|+..-... .....+.++.+.+++|
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~----g~~------~~~-~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALEL----GII------DEA-STDIEAV----EDADLVVLAVPVS---AIEDVLEEIAPYLKPG 72 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHT----TSS------SEE-ESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHHCGS-TT
T ss_pred CeEEEEEeCCHHHHHHHHHC----CCe------eec-cCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhhhhcCCC
Confidence 58999999999888777532 211 111 1111111 2359998865433 3556677777777777
Q ss_pred cEEE
Q psy890 114 GRFL 117 (131)
Q Consensus 114 G~l~ 117 (131)
+.+.
T Consensus 73 ~iv~ 76 (258)
T PF02153_consen 73 AIVT 76 (258)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6654
No 419
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.98 E-value=44 Score=23.54 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=49.8
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc-C-
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE-L- 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~- 77 (131)
||=.|+ +-|.....+++.. +.++++++.+++-.+.+++.+.. .. -+..... +..+ .
T Consensus 155 VlI~Ga~G~vG~~aiqlAk~~------------G~~Vi~~~~~~~~~~~~~~~lGa---~~----vi~~~~~~~~~~~i~ 215 (338)
T cd08295 155 VFVSAASGAVGQLVGQLAKLK------------GCYVVGSAGSDEKVDLLKNKLGF---DD----AFNYKEEPDLDAALK 215 (338)
T ss_pred EEEecCccHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHhcCC---ce----eEEcCCcccHHHHHH
Confidence 344443 4455555566653 46788888888766666543211 10 1111110 1111 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+-..+ ...+....+.|+++|.++.+-
T Consensus 216 ~~~~~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFPNGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCCCCcEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 111246898876433 245677889999999988653
No 420
>PRK05855 short chain dehydrogenase; Validated
Probab=65.72 E-value=57 Score=24.73 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=48.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=+| |+|.+...+++.+.. .+.+++.++.+.+..+...+.+...+ .++.++..|+.+..
T Consensus 318 ~lv~G-~s~giG~~~a~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~ 381 (582)
T PRK05855 318 VVVTG-AGSGIGRETALAFAR---------EGAEVVASDIDEAAAERTAELIRAAG------AVAHAYRVDVSDADAMEA 381 (582)
T ss_pred EEEEC-CcCHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHHH
Confidence 44444 456667777666541 25679999998877666655554433 16778888877642
Q ss_pred -C-----CCCCeeEEEEccccc
Q psy890 79 -I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~ 94 (131)
+ ..+.+|+++.+.+..
T Consensus 382 ~~~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 382 FAEWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred HHHHHHHhcCCCcEEEECCccC
Confidence 1 124689999877653
No 421
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=65.47 E-value=28 Score=24.91 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|+|+-.-+- ...+..+.+.++++|.++.+.
T Consensus 252 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 GGGVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 3468988764321 234677788899999988653
No 422
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.39 E-value=41 Score=22.96 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=39.7
Q ss_pred ceeeeecccc-hhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|-.|+++| .+...+++.+-. .+.+++..+.+....+.+. .+.... . ...++..|+.+..
T Consensus 8 ~~lITGas~~~GIG~aia~~la~---------~G~~vil~~r~~~~~~~~~-~~~~~~-~-----~~~~~~~Dl~~~~~v 71 (262)
T PRK07984 8 RILVTGVASKLSIAYGIAQAMHR---------EGAELAFTYQNDKLKGRVE-EFAAQL-G-----SDIVLPCDVAEDASI 71 (262)
T ss_pred EEEEeCCCCCccHHHHHHHHHHH---------CCCEEEEEecchhHHHHHH-HHHhcc-C-----CceEeecCCCCHHHH
Confidence 3555666542 555666555531 2567877776532222222 222211 1 4556677876532
Q ss_pred --------CCCCCeeEEEEcccc
Q psy890 79 --------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --------~~~~~~D~i~~~~~l 93 (131)
...+.+|+++.+.+.
T Consensus 72 ~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 72 DAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHHHhhcCCCCEEEECCcc
Confidence 012468999987764
No 423
>KOG3924|consensus
Probab=65.37 E-value=23 Score=26.22 Aligned_cols=104 Identities=9% Similarity=0.039 Sum_probs=58.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC---CHHHHHHHHHH----hhhccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI---NRAMLDVGEQR----ARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~---s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~ 74 (131)
...|+|+|-|.....++.... ...-.|+++ ..++-....+. .+..+... ..+..+.+++
T Consensus 195 ~F~DLGSGVGqlv~~~aa~a~-----------~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~---~~~~~i~gsf 260 (419)
T KOG3924|consen 195 VFMDLGSGVGQLVCFVAAYAG-----------CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP---NKIETIHGSF 260 (419)
T ss_pred cccCCCcccchhhHHHHHhhc-----------cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc---Cceeeccccc
Confidence 357999999998887777654 233344443 23333322222 22223211 1466677766
Q ss_pred ccCC---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.... .-....++|+++++.- -+++..-+.++..-+++|.+++-.+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEeccc
Confidence 5432 1134567887776533 3444444568888899999987543
No 424
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.72 E-value=35 Score=21.90 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=24.5
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++||+|++--.+-.-+-..+....++-++++++.+++.
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 468999999555422223344555555666888887764
No 425
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=64.69 E-value=41 Score=22.75 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=46.4
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCe-EEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- ..+ .+.....+ ...
T Consensus 101 vlI~g~g~vg~~~i~~a~~~------------g~~~vi~~~~~~~~~~~~~~~g----~~~----~~~~~~~~----~~~ 156 (277)
T cd08255 101 VAVVGLGLVGLLAAQLAKAA------------GAREVVGVDPDAARRELAEALG----PAD----PVAADTAD----EIG 156 (277)
T ss_pred EEEECCCHHHHHHHHHHHHc------------CCCcEEEECCCHHHHHHHHHcC----CCc----cccccchh----hhc
Confidence 44445533 44445555553 344 889998887766554321 000 11100000 012
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|+|+....- ...+....+.|+++|.++.+.
T Consensus 157 ~~~~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 157 GRGADVVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCCCCEEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 3458888753211 235667788899999987653
No 426
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.08 E-value=39 Score=23.83 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=44.4
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
++=+|. |..+..++..+.. .+.+++++|.++.....+.. .+ .++.. ...+...-.
T Consensus 155 vlViG~--G~iG~~~a~~L~~---------~Ga~V~v~~r~~~~~~~~~~----~G--------~~~~~--~~~l~~~l~ 209 (296)
T PRK08306 155 VLVLGF--GRTGMTLARTLKA---------LGANVTVGARKSAHLARITE----MG--------LSPFH--LSELAEEVG 209 (296)
T ss_pred EEEECC--cHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHH----cC--------Ceeec--HHHHHHHhC
Confidence 444555 4566656555431 25689999998765444332 12 12211 111111113
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+|+|+..-.. ...-.+..+.++|+++++-
T Consensus 210 ~aDiVI~t~p~------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 210 KIDIIFNTIPA------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred CCCEEEECCCh------hhhhHHHHHcCCCCcEEEE
Confidence 58999885321 1123455677889887763
No 427
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.05 E-value=49 Score=23.41 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+++.... ....+..+.+.|+++|+++.+.
T Consensus 234 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEec
Confidence 46898875332 1245678888899999987653
No 428
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.04 E-value=53 Score=23.83 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCCeeEEEE--ccccccccCHHHHHHHHHHhccCCc------EEEEEecc
Q psy890 81 SDSYSAYTI--AFGIRNVTRIDKALSEAYRVLKPGG------RFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~--~~~l~~~~~~~~~l~~~~~~L~p~G------~l~~~~~~ 122 (131)
...||+|++ ..-+|+-.++..-|+.+.|+++|.= .+++.|-+
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 467999998 4557888888889999999998764 55554544
No 429
>PLN02427 UDP-apiose/xylose synthase
Probab=63.98 E-value=24 Score=25.53 Aligned_cols=78 Identities=10% Similarity=-0.035 Sum_probs=43.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
|+|| |-.|+|.+...+++.+... .+.+|+++|.+........... ...+. .+++++.+|+.+.. +
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~--------~g~~V~~l~r~~~~~~~l~~~~-~~~~~----~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTE--------TPHKVLALDVYNDKIKHLLEPD-TVPWS----GRIQFHRINIKHDSRL 80 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhc--------CCCEEEEEecCchhhhhhhccc-cccCC----CCeEEEEcCCCChHHH
Confidence 4455 5567899999998887521 1357999997654332221110 00111 26888888876542 1
Q ss_pred --CCCCeeEEEEccc
Q psy890 80 --ESDSYSAYTIAFG 92 (131)
Q Consensus 80 --~~~~~D~i~~~~~ 92 (131)
.-..+|.|+-...
T Consensus 81 ~~~~~~~d~ViHlAa 95 (386)
T PLN02427 81 EGLIKMADLTINLAA 95 (386)
T ss_pred HHHhhcCCEEEEccc
Confidence 1124788776443
No 430
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=63.47 E-value=48 Score=23.15 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=49.8
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc-C-
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE-L- 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~- 77 (131)
||=.|+ +.|..+..+++.. +.++++++.+++-.+.+++ + +... -+..... +..+ .
T Consensus 142 VLI~ga~g~vG~~aiqlAk~~------------G~~Vi~~~~s~~~~~~~~~-l---Ga~~----vi~~~~~~~~~~~~~ 201 (325)
T TIGR02825 142 VMVNAAAGAVGSVVGQIAKLK------------GCKVVGAAGSDEKVAYLKK-L---GFDV----AFNYKTVKSLEETLK 201 (325)
T ss_pred EEEeCCccHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHH-c---CCCE----EEeccccccHHHHHH
Confidence 444553 4556666666653 4678889888876666643 2 2110 0111110 1111 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+-..+ ...+....+.|+++|+++.+-
T Consensus 202 ~~~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 202 KASPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HhCCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEec
Confidence 112246899976432 123567788999999998753
No 431
>PRK05854 short chain dehydrogenase; Provisional
Probab=62.71 E-value=51 Score=23.14 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ ++.+...+++.+-. .+.+|+.+..+.+-.+.+.+.+...... .++.++..|+.+..
T Consensus 17 ~lITGa-s~GIG~~~a~~La~---------~G~~Vil~~R~~~~~~~~~~~l~~~~~~----~~v~~~~~Dl~d~~sv~~ 82 (313)
T PRK05854 17 AVVTGA-SDGLGLGLARRLAA---------AGAEVILPVRNRAKGEAAVAAIRTAVPD----AKLSLRALDLSSLASVAA 82 (313)
T ss_pred EEEeCC-CChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhCCC----CceEEEEecCCCHHHHHH
Confidence 344454 44556666665431 2578999988887666665555432211 15788888877642
Q ss_pred ------CCCCCeeEEEEcccc
Q psy890 79 ------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l 93 (131)
...+..|+++.+.+.
T Consensus 83 ~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 83 LGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHhCCCccEEEECCcc
Confidence 112468999987664
No 432
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=62.59 E-value=32 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=14.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHh
Q psy890 34 APHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~ 54 (131)
..+++.+|.+.+-.+...+.+
T Consensus 151 ~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 151 VERLTIFDVDPARAAALADEL 171 (284)
T ss_pred CCEEEEECCCHHHHHHHHHHH
Confidence 457999999886666555544
No 433
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=62.54 E-value=41 Score=23.59 Aligned_cols=89 Identities=12% Similarity=-0.030 Sum_probs=46.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe-cccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE-ANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~ 80 (131)
+|+-+| .|.....+++.+.+.. ...++++.|.+...+..+.+. + +.... .+.. ...
T Consensus 5 ~v~IvG--~GliG~s~a~~l~~~g-------~~v~i~g~d~~~~~~~~a~~l----g--------v~d~~~~~~~--~~~ 61 (279)
T COG0287 5 KVGIVG--LGLMGGSLARALKEAG-------LVVRIIGRDRSAATLKAALEL----G--------VIDELTVAGL--AEA 61 (279)
T ss_pred EEEEEC--CchHHHHHHHHHHHcC-------CeEEEEeecCcHHHHHHHhhc----C--------cccccccchh--hhh
Confidence 344444 4555555555544211 356689999888666665422 1 11111 0100 011
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
....|+|+.+-... .....++++...|++|..+
T Consensus 62 ~~~aD~VivavPi~---~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 62 AAEADLVIVAVPIE---ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred cccCCEEEEeccHH---HHHHHHHHhcccCCCCCEE
Confidence 23468888754332 4456677777777776654
No 434
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=62.48 E-value=39 Score=26.48 Aligned_cols=78 Identities=6% Similarity=0.127 Sum_probs=48.4
Q ss_pred CCeEE-EEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---cCC-CCCCCee-EEEEccccccccCHHHHHHHHH
Q psy890 34 APHVT-VADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---ELP-IESDSYS-AYTIAFGIRNVTRIDKALSEAY 107 (131)
Q Consensus 34 ~~~~~-~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~-~~~~~~D-~i~~~~~l~~~~~~~~~l~~~~ 107 (131)
..++. ..|.+.+....++.+++...-. .++.+...|+. ... ....+|+ +|++...+..+.+ .++.
T Consensus 53 ~~~l~~l~d~~~~~s~~~~~n~~kil~~----~K~~~~~id~~~~~~~~~p~l~~Y~~vII~~~~l~~l~~-----~~i~ 123 (585)
T PF09960_consen 53 KEKLLILYDSNGELSMDIKENFKKILEY----MKIPYDTIDIAEFIKSSIPSLSDYRGVIILTTDLDPLGN-----EAIM 123 (585)
T ss_pred cceEEEEECCCChHHHHHHHHHHHHHHH----hccccEeeeccccccccCCcccceeEEEEEeccccccCh-----HHHH
Confidence 34555 9999998888888877654211 14555545533 112 2224677 6665554544444 6678
Q ss_pred HhccCCcEEEEEe
Q psy890 108 RVLKPGGRFLCLE 120 (131)
Q Consensus 108 ~~L~p~G~l~~~~ 120 (131)
+..+.||.+++..
T Consensus 124 ~yV~~GG~vif~~ 136 (585)
T PF09960_consen 124 NYVENGGTVIFAT 136 (585)
T ss_pred HHHHcCCeEEEEe
Confidence 8899999988864
No 435
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=62.28 E-value=3 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=13.8
Q ss_pred CCeEEEEeCCHHHHHHHHH
Q psy890 34 APHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~ 52 (131)
+.+++..|...........
T Consensus 43 Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 43 GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp T-EEEEEESSHHHHHHHHH
T ss_pred CCEEEeccCCHHHHHhhhc
Confidence 5789999998876666544
No 436
>PRK05872 short chain dehydrogenase; Provisional
Probab=61.72 E-value=51 Score=22.84 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=44.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.. .+.+++.++.+++.++...+.+.... .+..+..|+.+..
T Consensus 12 vlItG-as~gIG~~ia~~l~~---------~G~~V~~~~r~~~~l~~~~~~l~~~~-------~~~~~~~Dv~d~~~v~~ 74 (296)
T PRK05872 12 VVVTG-AARGIGAELARRLHA---------RGAKLALVDLEEAELAALAAELGGDD-------RVLTVVADVTDLAAMQA 74 (296)
T ss_pred EEEEC-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHhcCCC-------cEEEEEecCCCHHHHHH
Confidence 44444 445566666666531 25689999998877666555443211 4555557766531
Q ss_pred -C-----CCCCeeEEEEccccc
Q psy890 79 -I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~ 94 (131)
. ..+.+|+++.+.+..
T Consensus 75 ~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 75 AAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHHHHcCCCCEEEECCCcC
Confidence 0 124689999877653
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.66 E-value=44 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=17.7
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN 43 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s 43 (131)
+|+=+|||. |......+... +..+++.+|.+
T Consensus 23 ~VlviG~GglGs~ia~~La~~-----------Gv~~i~lvD~d 54 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGA-----------GVGTIVIVDDD 54 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----------CCCeEEEecCC
Confidence 577788863 43333222222 24678888876
No 438
>PRK06701 short chain dehydrogenase; Provisional
Probab=61.07 E-value=52 Score=22.76 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=54.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHH-HHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA-MLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|-.| ++|.+...+++.+.+ .+.+++.++.++. ......+.+...+ .++.++..|+.+..
T Consensus 48 ~iLItG-asggIG~~la~~l~~---------~G~~V~l~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~ 111 (290)
T PRK06701 48 VALITG-GDSGIGRAVAVLFAK---------EGADIAIVYLDEHEDANETKQRVEKEG------VKCLLIPGDVSDEAFC 111 (290)
T ss_pred EEEEeC-CCcHHHHHHHHHHHH---------CCCEEEEEeCCcchHHHHHHHHHHhcC------CeEEEEEccCCCHHHH
Confidence 345455 455566666665531 2567888876642 2333333333222 15777888876532
Q ss_pred ---CC-----CCCeeEEEEcccccc----cc----------------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ---IE-----SDSYSAYTIAFGIRN----VT----------------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ---~~-----~~~~D~i~~~~~l~~----~~----------------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+. ....|.++.+.+... +. .....++.+.+.++++|.++++.
T Consensus 112 ~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 112 KDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 11 135788887654321 10 12334455566667778777654
No 439
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=60.89 E-value=55 Score=22.95 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=46.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+|--||+ |.....++..+.+ .+.++.+.|.+++..+.+.+. +.. .. .+..+....
T Consensus 1 M~Ig~IGl--G~mG~~la~~L~~---------~g~~V~~~dr~~~~~~~l~~~----g~~-----~~----~s~~~~~~~ 56 (298)
T TIGR00872 1 MQLGLIGL--GRMGANIVRRLAK---------RGHDCVGYDHDQDAVKAMKED----RTT-----GV----ANLRELSQR 56 (298)
T ss_pred CEEEEEcc--hHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHc----CCc-----cc----CCHHHHHhh
Confidence 45556665 5565556555431 256789999999776665532 110 00 111111101
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
....|+|++.-.-. .....+.++...+++|-++
T Consensus 57 ~~~~dvIi~~vp~~---~~~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 57 LSAPRVVWVMVPHG---IVDAVLEELAPTLEKGDIV 89 (298)
T ss_pred cCCCCEEEEEcCch---HHHHHHHHHHhhCCCCCEE
Confidence 12357777642211 3455667777777776544
No 440
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=60.62 E-value=65 Score=23.72 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=24.0
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
|.|.....++..+. .+.+|+++|.+++.++..++.
T Consensus 7 GlGyvGl~~A~~lA----------~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 7 GTGYVGLSNGLLIA----------QNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred CCCHHHHHHHHHHH----------hCCcEEEEECCHHHHHHHHcC
Confidence 55656555554332 146799999999998887764
No 441
>PRK06500 short chain dehydrogenase; Provisional
Probab=60.19 E-value=47 Score=21.95 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=40.3
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-------
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP------- 78 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 78 (131)
|-.++|.+...+++.+.. .+.++++++.+++.+....+... . ++.++..|..+..
T Consensus 11 ItGasg~iG~~la~~l~~---------~g~~v~~~~r~~~~~~~~~~~~~--~-------~~~~~~~D~~~~~~~~~~~~ 72 (249)
T PRK06500 11 ITGGTSGIGLETARQFLA---------EGARVAITGRDPASLEAARAELG--E-------SALVIRADAGDVAAQKALAQ 72 (249)
T ss_pred EeCCCchHHHHHHHHHHH---------CCCEEEEecCCHHHHHHHHHHhC--C-------ceEEEEecCCCHHHHHHHHH
Confidence 344556677777666542 25688999887765554433331 1 5666777765431
Q ss_pred -C--CCCCeeEEEEcccc
Q psy890 79 -I--ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~--~~~~~D~i~~~~~l 93 (131)
. ....+|.++.+.+.
T Consensus 73 ~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 73 ALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 0 12467988876543
No 442
>PRK06181 short chain dehydrogenase; Provisional
Probab=59.89 E-value=50 Score=22.15 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=44.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+| |..|+|.+...+++.+.. .+.+|+.++.++.-.+...+.+...+ .++.++..|+.+..
T Consensus 4 vl-VtGasg~iG~~la~~l~~---------~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~ 67 (263)
T PRK06181 4 VI-ITGASEGIGRALAVRLAR---------AGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACER 67 (263)
T ss_pred EE-EecCCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHH
Confidence 44 344556677777666531 25689999988766555544443322 15777788876532
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ .....|.|+.+.+.
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 0 11357888876543
No 443
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.61 E-value=59 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|+|+-...- ...+....+.|+++|+++.+.
T Consensus 232 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3458999864331 225677888999999987653
No 444
>PRK10537 voltage-gated potassium channel; Provisional
Probab=59.35 E-value=40 Score=24.94 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=48.2
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.+ .+..++.+|.+.. .+..+ ....++.+|..+.. ..-+
T Consensus 245 I~G~g~lg~~v~~~L~~---------~g~~vvVId~d~~-----~~~~~---------~g~~vI~GD~td~e~L~~AgI~ 301 (393)
T PRK10537 245 ICGHSPLAINTYLGLRQ---------RGQAVTVIVPLGL-----EHRLP---------DDADLIPGDSSDSAVLKKAGAA 301 (393)
T ss_pred EECCChHHHHHHHHHHH---------CCCCEEEEECchh-----hhhcc---------CCCcEEEeCCCCHHHHHhcCcc
Confidence 47888888888887642 2457888886521 11111 14557777766532 1223
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.|++... -...........+.+.|+..++..
T Consensus 302 ~A~aVI~~t~---dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 302 RARAILALRD---NDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred cCCEEEEcCC---ChHHHHHHHHHHHHhCCCCcEEEE
Confidence 5666665321 111223344456777888877654
No 445
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=58.43 E-value=66 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+|+++-.-+ ....+..+.+.++++|+++.+-.
T Consensus 244 ~~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 244 SLDYIIDTVP------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCcEEEECCC------chHHHHHHHHHhccCCEEEEECC
Confidence 4788875432 12356777888999999887543
No 446
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=58.33 E-value=34 Score=21.71 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=23.8
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|++++.. . ..+......|+|||++++-.
T Consensus 55 ~~~~Dilv~l~-------~-~~~~~~~~~l~~~g~vi~ns 86 (173)
T PF01558_consen 55 VGEADILVALD-------P-EALERHLKGLKPGGVVIINS 86 (173)
T ss_dssp TSSESEEEESS-------H-HHHHHCGTTCETTEEEEEET
T ss_pred cCCCCEEEEcC-------H-HHHHHHhcCcCcCeEEEEEC
Confidence 37899999863 2 34457788899999997743
No 447
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=58.14 E-value=48 Score=21.33 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEcc---ccccccCHHHHHHHHHHh
Q psy890 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKALSEAYRV 109 (131)
Q Consensus 33 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~ 109 (131)
++.+++.+|.+.+.+++..+.+.....-+ .+.++... +-..+.... ...++......+.++...
T Consensus 21 ~~~~v~~ld~~~d~~~qI~~~L~~~~~i~----~lhivsHG---------~~G~l~LG~~~l~~~~L~~~~~~l~~w~~~ 87 (165)
T PF14252_consen 21 PGVEVVILDPSRDGLEQIAQALAGYQNID----ALHIVSHG---------SPGALQLGNTWLSAETLEQYADELAQWGQA 87 (165)
T ss_pred CCCEEEEEeCCCchHHHHHHHHhcCCCCc----eEEEEcCC---------CcceEEECCceeCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988887654111 34443222 111122211 123444566778999999
Q ss_pred ccCCcEEEEEecc
Q psy890 110 LKPGGRFLCLEFS 122 (131)
Q Consensus 110 L~p~G~l~~~~~~ 122 (131)
|.++|-+++.-+.
T Consensus 88 L~~~~~IlLyGC~ 100 (165)
T PF14252_consen 88 LADDGDILLYGCN 100 (165)
T ss_pred hCCCCcEEEEcCc
Confidence 9999988886443
No 448
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=57.97 E-value=34 Score=25.70 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=32.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 52 (131)
|+|.-||+||. ++..+.+-+-.... ..+..+++.+|++++-++...+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~----~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKE----DFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcc----cCCCCEEEEECCCHHHHHHHHH
Confidence 68889999996 77666665431110 0136899999999977776433
No 449
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=57.57 E-value=63 Score=22.58 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=53.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|--|+.+| +...+++.+-+ .+.+++.+--+++-++...+.++...-- .+.++..|+.+..
T Consensus 9 ~lITGASsG-IG~~~A~~lA~---------~g~~liLvaR~~~kL~~la~~l~~~~~v-----~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 9 ALITGASSG-IGAELAKQLAR---------RGYNLILVARREDKLEALAKELEDKTGV-----EVEVIPADLSDPEALER 73 (265)
T ss_pred EEEECCCch-HHHHHHHHHHH---------CCCEEEEEeCcHHHHHHHHHHHHHhhCc-----eEEEEECcCCChhHHHH
Confidence 444455444 55555555431 3678999999999999988888764311 6788999987753
Q ss_pred ----CCC--CCeeEEEEccccccc
Q psy890 79 ----IES--DSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ----~~~--~~~D~i~~~~~l~~~ 96 (131)
... ..+|+.+.+.++...
T Consensus 74 l~~~l~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 74 LEDELKERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred HHHHHHhcCCcccEEEECCCcCCc
Confidence 112 379999998776544
No 450
>KOG2782|consensus
Probab=57.12 E-value=5.9 Score=26.96 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=31.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
.+|.--|.|..+..+++..+ ..+++++|.++-+.+.+.-..
T Consensus 47 f~DmTfGagGHt~~ilqk~s-----------e~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 47 FVDMTFGAGGHTSSILQKHS-----------ELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred EEEEeccCCcchHHHHHhCc-----------HhhhhhhccChHHHHHHHHhh
Confidence 46777788888888888754 678999999998877765544
No 451
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=57.09 E-value=69 Score=22.89 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=47.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CCCCCeeEEEEcccc-ccc----cCHHHHHHHHH
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IESDSYSAYTIAFGI-RNV----TRIDKALSEAY 107 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~l-~~~----~~~~~~l~~~~ 107 (131)
..+.+.+-.|.+....+++-+..-+.. ++........+.. ...-+.+++++.+.. ... .....-+.++.
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-----~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-----NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-----cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 345777888999999999888876543 3333333322111 111234666665442 111 12345566677
Q ss_pred Hhc--cCCcEEEEEeccC
Q psy890 108 RVL--KPGGRFLCLEFSH 123 (131)
Q Consensus 108 ~~L--~p~G~l~~~~~~~ 123 (131)
+++ ..+|++++=|.+.
T Consensus 166 ~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHhcCCCceEEeccchh
Confidence 776 3568888766654
No 452
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=57.00 E-value=15 Score=23.96 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=21.4
Q ss_pred CCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..||+||....-...- .....++.+.+..+.||-++++
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmi 107 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMI 107 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 5799999876532211 1345567777777778777664
No 453
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=56.62 E-value=75 Score=24.14 Aligned_cols=35 Identities=9% Similarity=-0.175 Sum_probs=24.7
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 52 (131)
|.|.....++..+.+ .+.+|++.|.+++..+.+.+
T Consensus 6 GLG~MG~~mA~nL~~---------~G~~V~v~drt~~~~~~l~~ 40 (467)
T TIGR00873 6 GLAVMGSNLALNMAD---------HGFTVSVYNRTPEKTDEFLA 40 (467)
T ss_pred eeHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHh
Confidence 566677777666531 25689999999988776654
No 454
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=56.26 E-value=51 Score=21.64 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=30.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 52 (131)
+|--||+||-.++..+..-+..... ....++..+|++++-++...+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~-----l~~~ei~L~Did~~RL~~~~~ 46 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEE-----LSGSEIVLMDIDEERLEIVER 46 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTT-----STEEEEEEE-SCHHHHHHHHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCcc-----CCCcEEEEEcCCHHHHHHHHH
Confidence 3567899999988777665431111 135799999999987775443
No 455
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=56.19 E-value=48 Score=22.90 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+++....- ..+..+.+.++++|.++.+.
T Consensus 234 ~~~d~~i~~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 234 RGVDVVVEHVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCcEEEECCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 468988875442 24566778889999987653
No 456
>PTZ00117 malate dehydrogenase; Provisional
Probab=56.18 E-value=71 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=21.6
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHH
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD 48 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 48 (131)
+|.-+|+|+ |.....++...+ ..++..+|++++..+
T Consensus 7 KI~IIGaG~vG~~ia~~l~~~~-----------~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 7 KISMIGAGQIGSTVALLILQKN-----------LGDVVLYDVIKGVPQ 43 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-----------CCeEEEEECCCccch
Confidence 566788866 544333333211 257999999886543
No 457
>PRK08177 short chain dehydrogenase; Provisional
Probab=55.51 E-value=56 Score=21.39 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=38.3
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-------
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP------- 78 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 78 (131)
+-.|+|.+...+++.+.. .+.++++++.++.-.....+ .. ++.+...|+.+..
T Consensus 6 ItG~sg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~----~~-------~~~~~~~D~~d~~~~~~~~~ 65 (225)
T PRK08177 6 IIGASRGLGLGLVDRLLE---------RGWQVTATVRGPQQDTALQA----LP-------GVHIEKLDMNDPASLDQLLQ 65 (225)
T ss_pred EeCCCchHHHHHHHHHHh---------CCCEEEEEeCCCcchHHHHh----cc-------ccceEEcCCCCHHHHHHHHH
Confidence 444566677777666542 25689999877654433221 11 4555566655431
Q ss_pred -CCCCCeeEEEEcccc
Q psy890 79 -IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l 93 (131)
+....+|+|+.+.+.
T Consensus 66 ~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 66 RLQGQRFDLLFVNAGI 81 (225)
T ss_pred HhhcCCCCEEEEcCcc
Confidence 223468988876543
No 458
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=55.27 E-value=25 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=27.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
+++|.-||+|.++..+... ..+++.-|+++..+...+..+
T Consensus 23 ~~vepF~G~g~V~~~~~~~-------------~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 23 TYVEPFAGGGSVFLNLKQP-------------GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp EEEETT-TTSHHHHCC----------------SSEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEecchhHHHHHhccc-------------ccceeeeechHHHHHHHHHHH
Confidence 5789999999988777552 568999999997776655333
No 459
>PRK06914 short chain dehydrogenase; Provisional
Probab=55.06 E-value=64 Score=21.90 Aligned_cols=77 Identities=10% Similarity=-0.044 Sum_probs=44.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C--
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
+|-.| |+|.+...+++.+.+ .+.++++++-+++..+...+.....+.. .++.++..|+.+.. .
T Consensus 6 ~lItG-asg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~~~~~~ 71 (280)
T PRK06914 6 AIVTG-ASSGFGLLTTLELAK---------KGYLVIATMRNPEKQENLLSQATQLNLQ----QNIKVQQLDVTDQNSIHN 71 (280)
T ss_pred EEEEC-CCchHHHHHHHHHHh---------CCCEEEEEeCCHHHHHHHHHHHHhcCCC----CceeEEecCCCCHHHHHH
Confidence 34444 455666666665531 2568899988776665554444332221 16778888876532 1
Q ss_pred ------CCCCeeEEEEcccc
Q psy890 80 ------ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 ------~~~~~D~i~~~~~l 93 (131)
.-+..|.|+.+.+.
T Consensus 72 ~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 72 FQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHHHHHhcCCeeEEEECCcc
Confidence 11457888876554
No 460
>COG4889 Predicted helicase [General function prediction only]
Probab=55.05 E-value=1.3e+02 Score=25.50 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=57.5
Q ss_pred eeeecccchh--hHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 4 LFYLVFPGDI--AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 4 Ldig~G~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
|-..||||-. +..+.+.+. ..++..+=+|-..+.+..+.+....-.+ -+...++.|-....
T Consensus 185 LIMAcGTGKTfTsLkisEala-----------~~~iL~LvPSIsLLsQTlrew~~~~~l~---~~a~aVcSD~kvsr--- 247 (1518)
T COG4889 185 LIMACGTGKTFTSLKISEALA-----------AARILFLVPSISLLSQTLREWTAQKELD---FRASAVCSDDKVSR--- 247 (1518)
T ss_pred EEEecCCCccchHHHHHHHHh-----------hhheEeecchHHHHHHHHHHHhhccCcc---ceeEEEecCccccc---
Confidence 4567888854 666666664 4667777788777777766665443211 12344455432211
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.=|+-..-..+.-..+...++.++...-|++|.+++.
T Consensus 248 s~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 248 SAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred cccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 11233333333333457788888888888999987653
No 461
>PLN02494 adenosylhomocysteinase
Probab=55.02 E-value=46 Score=25.37 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=44.1
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEE
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 88 (131)
|.|.....+++.+.. .+.+|+++|.++.....+... + .... +..+. . ...|+|+
T Consensus 261 GyG~IGr~vA~~aka---------~Ga~VIV~e~dp~r~~eA~~~----G--------~~vv--~leEa-l--~~ADVVI 314 (477)
T PLN02494 261 GYGDVGKGCAAAMKA---------AGARVIVTEIDPICALQALME----G--------YQVL--TLEDV-V--SEADIFV 314 (477)
T ss_pred CCCHHHHHHHHHHHH---------CCCEEEEEeCCchhhHHHHhc----C--------Ceec--cHHHH-H--hhCCEEE
Confidence 445566666665431 256899999887443332211 1 1111 22111 1 2468888
Q ss_pred EccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 89 ~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..-. ....+..+....||+|++++-+-+
T Consensus 315 ~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 7322 222233667788999999987654
No 462
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=54.99 E-value=1e+02 Score=24.23 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=45.0
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC---CCCCCCceeEEecccccCC-C--
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK---VPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
|-.|+|.++..+++.+.. .+.+|.+++.+.+-.....+.+..... ......++.++.+|+.+.. +
T Consensus 85 VTGATGgIG~aLAr~LLk---------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 85 VAGATGKVGSRTVRELLK---------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred EECCCCHHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 445567787777776631 256888888887666544433322100 0000015788888887642 1
Q ss_pred CCCCeeEEEEcccc
Q psy890 80 ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 ~~~~~D~i~~~~~l 93 (131)
.-+..|+||++.+.
T Consensus 156 aLggiDiVVn~AG~ 169 (576)
T PLN03209 156 ALGNASVVICCIGA 169 (576)
T ss_pred HhcCCCEEEEcccc
Confidence 12457988887554
No 463
>PRK07454 short chain dehydrogenase; Provisional
Probab=54.98 E-value=59 Score=21.46 Aligned_cols=75 Identities=9% Similarity=-0.048 Sum_probs=46.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.+ .+.+|++++.++.-.....+..+... .++.++..|+.+..
T Consensus 9 vlItG-~sg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 9 ALITG-ASSGIGKATALAFAK---------AGWDLALVARSQDALEALAAELRSTG------VKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred EEEeC-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhCC------CcEEEEEccCCCHHHHHH
Confidence 34444 567777777776642 25689999988866555544443322 16778888877642
Q ss_pred -CC-----CCCeeEEEEcccc
Q psy890 79 -IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l 93 (131)
+. ....|.++.+.+.
T Consensus 73 ~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 11 1357999886654
No 464
>KOG2360|consensus
Probab=54.78 E-value=51 Score=24.49 Aligned_cols=61 Identities=5% Similarity=-0.076 Sum_probs=48.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.++|..|..|.-+..++.... ...+++++|.+..-....++.+...+.. .+.....|+...
T Consensus 216 ~v~d~caapg~KTsH~a~i~~----------n~gki~afe~d~~r~~tl~~~l~~ag~~-----~~~~~~~df~~t 276 (413)
T KOG2360|consen 216 RVIDTCAAPGNKTSHLAAIMR----------NQGKIYAFERDAKRAATLRKLLKIAGVS-----IVESVEGDFLNT 276 (413)
T ss_pred ceeeeccccccchhhHHHHhh----------ccCCcchhhhhhHHHHHHHHHHHHcCCC-----ccccccccccCC
Confidence 478888999988888888776 3678999999998888888888777654 566667777664
No 465
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=54.04 E-value=21 Score=25.38 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=25.2
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
+=.|+|||-...-+.+++.+.. +..+++++|+..
T Consensus 173 fVagvGTGGTitGvar~Lk~~~-------p~i~iv~vdP~~ 206 (300)
T COG0031 173 FVAGVGTGGTITGVARYLKERN-------PNVRIVAVDPEG 206 (300)
T ss_pred EEEeCCcchhHHHHHHHHHhhC-------CCcEEEEECCCC
Confidence 4468899888777777776443 478999999865
No 466
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=53.91 E-value=17 Score=25.63 Aligned_cols=32 Identities=6% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.||+|+.+....++-.+. +.++++|++.+++
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~Lvv 252 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVV 252 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEE
Confidence 5699999876644333332 6678899998854
No 467
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.82 E-value=89 Score=23.15 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=50.2
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-CCCCCCceeEEecccccCC--CC--
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-VPVPNPRLRFLEANAEELP--IE-- 80 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~--~~-- 80 (131)
+-.+||.+...++..+...... ...+++-.+-.+....+.++.+..... ...-..+++.+.+|+.+.. ++
T Consensus 5 LTGATGFLG~yLl~eLL~~~~~-----kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 5 LTGATGFLGAYLLLELLDRSDA-----KVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred EecCchHhHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 4567899987776665422210 123444455556677777776662111 1111238999999988643 22
Q ss_pred -----CCCeeEEEEcccccc
Q psy890 81 -----SDSYSAYTIAFGIRN 95 (131)
Q Consensus 81 -----~~~~D~i~~~~~l~~ 95 (131)
.+..|.|+-+..+.+
T Consensus 80 ~~~~La~~vD~I~H~gA~Vn 99 (382)
T COG3320 80 TWQELAENVDLIIHNAALVN 99 (382)
T ss_pred HHHHHhhhcceEEecchhhc
Confidence 356899998777644
No 468
>PRK07774 short chain dehydrogenase; Provisional
Probab=53.34 E-value=64 Score=21.37 Aligned_cols=75 Identities=12% Similarity=0.013 Sum_probs=45.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C--
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
+|=.| |+|.+...+++.+.. .+.+++.++.++.......+.+.... .+..++..|+.+.. .
T Consensus 9 vlItG-asg~iG~~la~~l~~---------~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 9 AIVTG-AAGGIGQAYAEALAR---------EGASVVVADINAEGAERVAKQIVADG------GTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred EEEEC-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHH
Confidence 34334 566777777776642 25689999988765555544443221 15667777876542 0
Q ss_pred -------CCCCeeEEEEcccc
Q psy890 80 -------ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 -------~~~~~D~i~~~~~l 93 (131)
..+.+|+|+.+.+.
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 73 MADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 11358999987664
No 469
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=53.21 E-value=25 Score=25.32 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=30.7
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
..+|+||....+..-+.+.-.-.++...||||.+++
T Consensus 243 ~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViV 278 (356)
T COG3288 243 KEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIV 278 (356)
T ss_pred cCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEE
Confidence 468999998887777777778889999999999876
No 470
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=52.87 E-value=77 Score=22.18 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=51.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-CCCC-CCCceeEEecccccCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-KVPV-PNPRLRFLEANAEELP 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~ 78 (131)
|+|.-+|+ |.....++..+.. .+.+++.+|.++..++..++.-.... .... ....+.. ..+..+
T Consensus 2 mkI~iiG~--G~mG~~~a~~L~~---------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 67 (325)
T PRK00094 2 MKIAVLGA--GSWGTALAIVLAR---------NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE-- 67 (325)
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH--
Confidence 45666665 5566666555431 24579999998877766554311100 0000 0001111 111111
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.....|+|+..-.- ......+..+...++++.+++..
T Consensus 68 -~~~~~D~vi~~v~~---~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 68 -ALADADLILVAVPS---QALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred -HHhCCCEEEEeCCH---HHHHHHHHHHHhhcCCCCEEEEE
Confidence 11346888775432 24556677777888887766544
No 471
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=52.86 E-value=80 Score=22.33 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=40.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEcccccccc--C-----------HH
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--R-----------ID 100 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~-----------~~ 100 (131)
..++..+|++++..+....-+....... ..++++...|...+ ...|+|+...+....+ + ..
T Consensus 21 ~~el~L~Di~~~~~~g~a~Dl~~~~~~~--~~~~~i~~~~~~~~----~daDivVitag~~rk~g~~R~dll~~N~~i~~ 94 (299)
T TIGR01771 21 ADEIVLIDINKDKAEGEAMDLQHAASFL--PTPKKIRSGDYSDC----KDADLVVITAGAPQKPGETRLELVGRNVRIMK 94 (299)
T ss_pred CCEEEEEeCCCChhhHHHHHHHHhhccc--CCCeEEecCCHHHH----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4589999998765444333332211000 01344443333322 3469999877664332 1 12
Q ss_pred HHHHHHHHhccCCcEEEEE
Q psy890 101 KALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 101 ~~l~~~~~~L~p~G~l~~~ 119 (131)
.....+.+ ..|+|+++++
T Consensus 95 ~~~~~i~~-~~p~~~vivv 112 (299)
T TIGR01771 95 SIVPEVVK-SGFDGIFLVA 112 (299)
T ss_pred HHHHHHHH-hCCCeEEEEe
Confidence 33444444 3688988774
No 472
>PLN02688 pyrroline-5-carboxylate reductase
Probab=52.74 E-value=71 Score=21.74 Aligned_cols=91 Identities=18% Similarity=0.102 Sum_probs=44.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEE-eCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVA-DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
|+|.-||+| .....+++.+.+.. .. ...+++++ |.+++..+.+.+ .+ +.. ..+..+.
T Consensus 1 ~kI~~IG~G--~mG~a~a~~L~~~g--~~---~~~~i~v~~~r~~~~~~~~~~----~g--------~~~-~~~~~e~-- 58 (266)
T PLN02688 1 FRVGFIGAG--KMAEAIARGLVASG--VV---PPSRISTADDSNPARRDVFQS----LG--------VKT-AASNTEV-- 58 (266)
T ss_pred CeEEEECCc--HHHHHHHHHHHHCC--CC---CcceEEEEeCCCHHHHHHHHH----cC--------CEE-eCChHHH--
Confidence 667777765 46555555543100 00 12368888 887765544321 12 211 1121111
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
....|+|+..-- .......+..+...++++..++
T Consensus 59 -~~~aDvVil~v~---~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 59 -VKSSDVIILAVK---PQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred -HhcCCEEEEEEC---cHHHHHHHHHHHhhcCCCCEEE
Confidence 123588877541 2244566666666677766554
No 473
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=52.20 E-value=46 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=18.2
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN 43 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s 43 (131)
+|+=+||| .|......+... +..+++.+|.+
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~-----------Gvg~i~lvD~d 168 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAA-----------GVGTLGIVDHD 168 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHc-----------CCCeEEEEeCC
Confidence 56778886 344433333332 25678888876
No 474
>PRK06153 hypothetical protein; Provisional
Probab=52.03 E-value=21 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=21.4
Q ss_pred ceeeeec-ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC
Q psy890 2 YILFYLV-FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN 43 (131)
Q Consensus 2 ~iLdig~-G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s 43 (131)
+|+=+|| |+|......+.+.+ ..+++.+|.+
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~G-----------VgeI~LVD~D 209 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTP-----------VREIHLFDGD 209 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcC-----------CCEEEEECCC
Confidence 5788899 57776666655543 5678877765
No 475
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=51.97 E-value=69 Score=21.34 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=43.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|++|=.|+ +|.+...+++.+.. .+.++++++.+++-++...+... . ++.++..|+.+..
T Consensus 1 ~~vlItGa-sg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~--~-------~~~~~~~Dl~~~~~i 61 (248)
T PRK10538 1 MIVLVTGA-TAGFGECITRRFIQ---------QGHKVIATGRRQERLQELKDELG--D-------NLYIAQLDVRNRAAI 61 (248)
T ss_pred CEEEEECC-CchHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHhc--c-------ceEEEEecCCCHHHH
Confidence 55665554 44566666666531 25689999988765544433321 1 5677777776531
Q ss_pred ---C-----CCCCeeEEEEcccc
Q psy890 79 ---I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 ---~-----~~~~~D~i~~~~~l 93 (131)
+ ..+..|.++.+.+.
T Consensus 62 ~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 62 EEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 11358998876543
No 476
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=51.89 E-value=85 Score=22.37 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=50.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|.=+|+ |.....++-.+.... ...++..+|++++.++....-+....... .++.....+.+.+
T Consensus 8 ki~iiGa--G~vG~~~a~~l~~~~-------~~~el~L~D~~~~~~~g~~~Dl~~~~~~~---~~~~i~~~~~~~~---- 71 (315)
T PRK00066 8 KVVLVGD--GAVGSSYAYALVNQG-------IADELVIIDINKEKAEGDAMDLSHAVPFT---SPTKIYAGDYSDC---- 71 (315)
T ss_pred EEEEECC--CHHHHHHHHHHHhcC-------CCCEEEEEeCCCchhHHHHHHHHhhcccc---CCeEEEeCCHHHh----
Confidence 4666777 444443333321100 23489999998876554433333221100 1344444443332
Q ss_pred CCeeEEEEcccccccc--CH-------HHHHHHHHHhc---cCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVT--RI-------DKALSEAYRVL---KPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~-------~~~l~~~~~~L---~p~G~l~~~ 119 (131)
...|+|+...+...-+ ++ ...+.++...+ .|+|.++++
T Consensus 72 ~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv 121 (315)
T PRK00066 72 KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA 121 (315)
T ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 4579999877664332 11 23334433333 378887764
No 477
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.63 E-value=72 Score=21.44 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=40.2
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|-.|+++ +.+...+++.+-+ .+.+|+..+.+....+...+ ... .++.++..|+.+..
T Consensus 10 ~lItGas~~~gIG~a~a~~la~---------~G~~Vi~~~r~~~~~~~~~~-~~~--------~~~~~~~~Dl~~~~~v~ 71 (252)
T PRK06079 10 IVVMGVANKRSIAWGCAQAIKD---------QGATVIYTYQNDRMKKSLQK-LVD--------EEDLLVECDVASDESIE 71 (252)
T ss_pred EEEeCCCCCCchHHHHHHHHHH---------CCCEEEEecCchHHHHHHHh-hcc--------CceeEEeCCCCCHHHHH
Confidence 45555543 4566666666531 35678888766432222221 111 15677778876532
Q ss_pred --C-----CCCCeeEEEEcccc
Q psy890 79 --I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --~-----~~~~~D~i~~~~~l 93 (131)
+ .-+.+|+++.+.+.
T Consensus 72 ~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 72 RAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHHHHHHhCCCCEEEEcccc
Confidence 0 12568999887664
No 478
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=51.58 E-value=78 Score=21.85 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-----CCCCCCCeeEEEEccccccccCHHHHHHHHHH
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-----LPIESDSYSAYTIAFGIRNVTRIDKALSEAYR 108 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~ 108 (131)
.-+++.+|+-++-.+..++++.... +++++..|-.+ +| +...--+|+.--....-.+..+....+.+
T Consensus 79 qDrl~l~ELHp~d~~~L~~~~~~~~-------~v~v~~~DG~~~l~allP-P~~rRglVLIDPpYE~~~dy~~v~~~l~~ 150 (245)
T PF04378_consen 79 QDRLVLFELHPQDFEALKKNFRRDR-------RVRVHHRDGYEGLKALLP-PPERRGLVLIDPPYEQKDDYQRVVDALAK 150 (245)
T ss_dssp TSEEEEE--SHHHHHHHTTS--TTS--------EEEE-S-HHHHHHHH-S--TTS-EEEEE-----STTHHHHHHHHHHH
T ss_pred cceEEEEecCchHHHHHHHHhccCC-------ccEEEeCchhhhhhhhCC-CCCCCeEEEECCCCCCchHHHHHHHHHHH
Confidence 5689999999999998888876543 78888888433 12 22234455543333333344444444444
Q ss_pred hcc--CCcEEEE
Q psy890 109 VLK--PGGRFLC 118 (131)
Q Consensus 109 ~L~--p~G~l~~ 118 (131)
.+| +.|.+++
T Consensus 151 a~kR~~~G~~~i 162 (245)
T PF04378_consen 151 ALKRWPTGVYAI 162 (245)
T ss_dssp HHHH-TTSEEEE
T ss_pred HHHhcCCcEEEE
Confidence 443 4555444
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=51.49 E-value=1e+02 Score=23.18 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=46.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
++=+|+ |.....++..+.. .+.+|+++|.++.....+.. . + .... ++.+. -.
T Consensus 215 VlViG~--G~IG~~vA~~lr~---------~Ga~ViV~d~dp~ra~~A~~---~-G--------~~v~--~l~ea---l~ 266 (425)
T PRK05476 215 VVVAGY--GDVGKGCAQRLRG---------LGARVIVTEVDPICALQAAM---D-G--------FRVM--TMEEA---AE 266 (425)
T ss_pred EEEECC--CHHHHHHHHHHHh---------CCCEEEEEcCCchhhHHHHh---c-C--------CEec--CHHHH---Hh
Confidence 344444 4566655555431 25689999988754333221 1 1 1111 22221 12
Q ss_pred CeeEEEEccccccccCHHHHHH-HHHHhccCCcEEEEEeccC
Q psy890 83 SYSAYTIAFGIRNVTRIDKALS-EAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~-~~~~~L~p~G~l~~~~~~~ 123 (131)
.+|+|+..-+ ... .+. .....||+|++++.+-+..
T Consensus 267 ~aDVVI~aTG-----~~~-vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 267 LGDIFVTATG-----NKD-VITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCCEEEECCC-----CHH-HHHHHHHhcCCCCCEEEEcCCCC
Confidence 5799987432 222 343 5778899999987754433
No 480
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=51.42 E-value=55 Score=23.63 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=18.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
+||=+|||. +...+++.+-.. +..+++.+|.+.
T Consensus 26 ~VlIiG~Gg--lGs~va~~La~a--------Gvg~i~lvD~D~ 58 (338)
T PRK12475 26 HVLIVGAGA--LGAANAEALVRA--------GIGKLTIADRDY 58 (338)
T ss_pred cEEEECCCH--HHHHHHHHHHHc--------CCCEEEEEcCCc
Confidence 577888863 333343333200 245888888764
No 481
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=51.20 E-value=38 Score=22.05 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=21.9
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+..|++++.... . +.+....|+|||++++-
T Consensus 65 ~~~~D~lva~d~~-------~-~~~~~~~l~~gg~ii~n 95 (197)
T PRK06274 65 EGQADLLLALEPA-------E-VARNLHFLKKGGKIIVN 95 (197)
T ss_pred CCCCCEEEEcCHH-------H-HHHHHhhcCCCcEEEEE
Confidence 5678999986432 2 34556779999988764
No 482
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=51.15 E-value=86 Score=22.20 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=23.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (131)
+|+-+|+ |..+..+++.+... ...+++.+|.+++-...
T Consensus 180 ~V~ViGa--G~iG~~~a~~L~~~--------g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 180 KVLVIGA--GEMGELAAKHLAAK--------GVAEITIANRTYERAEE 217 (311)
T ss_pred EEEEECc--HHHHHHHHHHHHHc--------CCCEEEEEeCCHHHHHH
Confidence 4566665 55666666655310 24679999998754433
No 483
>PRK06194 hypothetical protein; Provisional
Probab=50.90 E-value=77 Score=21.59 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=46.9
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C--
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
+| |-.|+|.+...+++.+.. .+.+++.+|.+.+.++...+.+...+ .++.++..|+.+.. .
T Consensus 9 vl-VtGasggIG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~d~~~~~~ 72 (287)
T PRK06194 9 AV-ITGAASGFGLAFARIGAA---------LGMKLVLADVQQDALDRAVAELRAQG------AEVLGVRTDVSDAAQVEA 72 (287)
T ss_pred EE-EeCCccHHHHHHHHHHHH---------CCCEEEEEeCChHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHH
Confidence 44 444556677777666541 25689999988776665555444322 16777888876532 1
Q ss_pred -------CCCCeeEEEEccccc
Q psy890 80 -------ESDSYSAYTIAFGIR 94 (131)
Q Consensus 80 -------~~~~~D~i~~~~~l~ 94 (131)
..+..|+++.+.+..
T Consensus 73 ~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 73 LADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 113579998877653
No 484
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.84 E-value=60 Score=20.31 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=48.5
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-C-CCCceeEEecccccCCCCCCCeeE
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-V-PNPRLRFLEANAEELPIESDSYSA 86 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~D~ 86 (131)
|.|.++..++..+.. .+-+|+....+++.++..++.-......+ . ...++.. ..|+.+. -+..|+
T Consensus 6 GaG~~G~AlA~~la~---------~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~~~ad~ 72 (157)
T PF01210_consen 6 GAGNWGTALAALLAD---------NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---LEDADI 72 (157)
T ss_dssp SSSHHHHHHHHHHHH---------CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---HTT-SE
T ss_pred CcCHHHHHHHHHHHH---------cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---hCcccE
Confidence 555566666555431 25689999999987777765433211110 0 0002222 2232221 134688
Q ss_pred EEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 87 i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
|+..-.-. .....++++..+++++-.+++
T Consensus 73 IiiavPs~---~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 73 IIIAVPSQ---AHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp EEE-S-GG---GHHHHHHHHTTTSHTT-EEEE
T ss_pred EEecccHH---HHHHHHHHHhhccCCCCEEEE
Confidence 87643222 346778888888877766665
No 485
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=50.77 E-value=42 Score=20.78 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=27.3
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..|++|+.+...... ....+.+.+..+.||.+++.-.
T Consensus 52 ~~y~~vi~P~~~~~~---~~~~~~l~~~v~~GG~li~~~~ 88 (154)
T cd03143 52 SGYKLVVLPDLYLLS---DATAAALRAYVENGGTLVAGPR 88 (154)
T ss_pred ccCCEEEECchhcCC---HHHHHHHHHHHHCCCEEEEecC
Confidence 469999998775533 4566778888899998876433
No 486
>PRK07024 short chain dehydrogenase; Provisional
Probab=50.54 E-value=75 Score=21.31 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=45.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~- 79 (131)
++|=.|+ +|.+...+++.+.. .+.+++.++.+.+.+....+...... ++.++..|+.+.. .
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dl~~~~~i~ 66 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYAR---------QGATLGLVARRTDALQAFAARLPKAA-------RVSVYAADVRDADALA 66 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHhcccCC-------eeEEEEcCCCCHHHHH
Confidence 3444454 56677777666541 25689999988776655544433211 5777888876532 0
Q ss_pred --------CCCCeeEEEEcccc
Q psy890 80 --------ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 --------~~~~~D~i~~~~~l 93 (131)
..+..|+++.+.+.
T Consensus 67 ~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 67 AAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHhCCCCCEEEECCCc
Confidence 12357999987654
No 487
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=50.51 E-value=86 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+...+ ....+..+.+.|+++|.++....
T Consensus 231 ~~~d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 231 EGFDVGLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 46888876322 13456778889999999887653
No 488
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=50.50 E-value=54 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=17.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN 43 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s 43 (131)
+|+=+|||. +...++..+-.. +..+++.+|.+
T Consensus 26 ~VlVvG~Gg--lGs~va~~La~a--------Gvg~i~lvD~D 57 (339)
T PRK07688 26 HVLIIGAGA--LGTANAEMLVRA--------GVGKVTIVDRD 57 (339)
T ss_pred cEEEECCCH--HHHHHHHHHHHc--------CCCeEEEEeCC
Confidence 577888863 333333332100 24589999976
No 489
>PRK07904 short chain dehydrogenase; Provisional
Probab=50.06 E-value=77 Score=21.36 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHH-HHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAM-LDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|-.|+ +|.+...+++.+-.. .+.+|+.++.+++- ++...+.+...+. .++.++..|+.+..
T Consensus 10 ~vlItGa-s~giG~~la~~l~~~--------gg~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 10 TILLLGG-TSEIGLAICERYLKN--------APARVVLAALPDDPRRDAAVAQMKAAGA-----SSVEVIDFDALDTDSH 75 (253)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhc--------CCCeEEEEeCCcchhHHHHHHHHHhcCC-----CceEEEEecCCChHHH
Confidence 3555565 455666676664310 13688888877653 5554444444321 16788888876532
Q ss_pred -------CCCCCeeEEEEcccc
Q psy890 79 -------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l 93 (131)
...+..|+++.+.+.
T Consensus 76 ~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeeec
Confidence 112468988876544
No 490
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=49.78 E-value=45 Score=24.57 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=15.5
Q ss_pred CCeEEEEeCCHHHHHHHHHH
Q psy890 34 APHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~ 53 (131)
-.+|+++|.|+......+=+
T Consensus 57 P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 57 PKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CceEEEEeCCHHHHHHHHHH
Confidence 47899999999887765433
No 491
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=49.76 E-value=74 Score=21.02 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=18.1
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
..+|+|+.. ..+.......+..+.+.+++
T Consensus 109 ~~~DlVi~a--~Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 109 KDADIVCEA--FDNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred cCCCEEEEC--CCCHHHHHHHHHHHHHHcCC
Confidence 458999876 34444455556666666554
No 492
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=49.38 E-value=68 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=20.3
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...|++++... ..+......|+|||++++-
T Consensus 66 ~~~D~lval~~--------~~~~~~~~~l~~~g~vi~n 95 (177)
T PRK08537 66 ISPDILVAMSQ--------EAYDKYLDDLKEGGTVIVD 95 (177)
T ss_pred CCCCEEEEeCH--------HHHHHHHhccCCCeEEEEE
Confidence 45798887532 1234556789999998764
No 493
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=49.21 E-value=85 Score=21.61 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=36.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++=+|+| ..+..++..+.. .+.+++.++.+++-.+...+.+...+ .......+ +. ..
T Consensus 119 ~vliiGaG--g~g~aia~~L~~---------~g~~v~v~~R~~~~~~~la~~~~~~~-------~~~~~~~~--~~--~~ 176 (270)
T TIGR00507 119 RVLIIGAG--GAARAVALPLLK---------ADCNVIIANRTVSKAEELAERFQRYG-------EIQAFSMD--EL--PL 176 (270)
T ss_pred EEEEEcCc--HHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHhhcC-------ceEEechh--hh--cc
Confidence 35556664 455555444421 24588999988765555444443222 22222111 11 12
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
..+|+|+..-...
T Consensus 177 ~~~DivInatp~g 189 (270)
T TIGR00507 177 HRVDLIINATSAG 189 (270)
T ss_pred cCccEEEECCCCC
Confidence 3589998876654
No 494
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=48.99 E-value=60 Score=22.74 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=10.0
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
..+|+|+.+-.+...
T Consensus 198 ~~~DilINaTp~Gm~ 212 (289)
T PRK12548 198 ASSDILVNATLVGMK 212 (289)
T ss_pred ccCCEEEEeCCCCCC
Confidence 356999887665543
No 495
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.78 E-value=93 Score=21.90 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.+|+|+..-. -...+.++.+.|+++|.++.+.
T Consensus 230 ~~vd~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 230 TGVDVVLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 46899976432 1234567788899999987653
No 496
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=48.72 E-value=56 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=20.8
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (131)
|.|..+..+++.+.. .+.++++++.++.....
T Consensus 158 G~G~iG~avA~~L~~---------~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 158 GFGRTGMTIARTFSA---------LGARVFVGARSSADLAR 189 (287)
T ss_pred cChHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHH
Confidence 446677777776541 24689999988764433
No 497
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=48.52 E-value=56 Score=24.44 Aligned_cols=45 Identities=22% Similarity=0.129 Sum_probs=30.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 50 (131)
|+|.-||+||. ++..+.+-+-..+- ..+..+++.+|++++-++..
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~----~l~~~ei~L~Did~~Rl~~v 45 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPE----ELPISEVTLYDIDEERLDII 45 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChh----hCCCCEEEEEcCCHHHHHHH
Confidence 67888999996 77666665431110 01368999999999777653
No 498
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=48.43 E-value=90 Score=22.66 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=40.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC-
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE- 80 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~- 80 (131)
|+=+|+ |.....+++.+.... ...+++..|.+.+..+...+.+. . .++.+...|..+.. +.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~-------~~~~v~va~r~~~~~~~~~~~~~-~-------~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRG-------PFEEVTVADRNPEKAERLAEKLL-G-------DRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTT-------CE-EEEEEESSHHHHHHHHT--T-T-------TTEEEEE--TTTHHHHHH
T ss_pred CEEEcC--cHHHHHHHHHHhcCC-------CCCcEEEEECCHHHHHHHHhhcc-c-------cceeEEEEecCCHHHHHH
Confidence 455677 777777777665222 12289999999977766655431 1 27888888877642 11
Q ss_pred -CCCeeEEEEcc
Q psy890 81 -SDSYSAYTIAF 91 (131)
Q Consensus 81 -~~~~D~i~~~~ 91 (131)
-...|+|+...
T Consensus 64 ~~~~~dvVin~~ 75 (386)
T PF03435_consen 64 LLRGCDVVINCA 75 (386)
T ss_dssp HHTTSSEEEE-S
T ss_pred HHhcCCEEEECC
Confidence 13459998743
No 499
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=48.26 E-value=44 Score=21.83 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=21.5
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+|++++... .. +......|+|||++++-
T Consensus 67 ~~~D~lva~d~-------~~-~~~~~~~lk~gg~ii~n 96 (197)
T PRK06853 67 GKADLLLAFEP-------LE-ALRYLPYLKKGGKVVVN 96 (197)
T ss_pred CCCCEEEEeCH-------HH-HHHHHHhcCCCcEEEEE
Confidence 47899998653 22 34556778999999765
No 500
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.13 E-value=84 Score=21.20 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=55.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH--HHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR--AMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
++|-.|++ ++.+...+++.+.. .+.+++.++.+. +..+...+.+.. ++.++..|+.+..
T Consensus 9 ~~lItGa~~s~GIG~a~a~~la~---------~G~~v~l~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~ 70 (256)
T PRK07889 9 RILVTGVITDSSIAFHVARVAQE---------QGAEVVLTGFGRALRLTERIAKRLPE---------PAPVLELDVTNEE 70 (256)
T ss_pred EEEEeCCCCcchHHHHHHHHHHH---------CCCEEEEecCccchhHHHHHHHhcCC---------CCcEEeCCCCCHH
Confidence 35556663 45666667666531 256788887653 333333222211 4556777766532
Q ss_pred ----------CCCCCeeEEEEcccccc-------cc--CH--------------HHHHHHHHHhccCCcEEEEEec
Q psy890 79 ----------IESDSYSAYTIAFGIRN-------VT--RI--------------DKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ----------~~~~~~D~i~~~~~l~~-------~~--~~--------------~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
...+.+|+++.+.+... +. +. -.....+.+.|+++|.++.+..
T Consensus 71 ~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 71 HLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 01256899988766431 11 11 1233456677777888776543
Done!