RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy890
(131 letters)
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 139 bits (354), Expect = 1e-42
Identities = 50/120 (41%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V K V D + ML VG ++ RDL + F+
Sbjct: 63 GDLAIALAKAVGK----------TGEVVGLDFSEGMLAVGREKLRDLGLSG----NVEFV 108
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
+ +AE LP +S+ A TIAFG+RNV IDKAL E YRVLKPGGR + LEFS N L+
Sbjct: 109 QGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLK 168
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 124 bits (313), Expect = 2e-36
Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V V DI+ +ML+V ++ + V F+
Sbjct: 63 GDMALLLAKSVGTG-----------EVVGLDISESMLEVAREKLKKKGVQNV-----EFV 106
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+AE LP +S+ A TI+FG+RNVT IDKAL E YRVLKPGGR L LEFS +N
Sbjct: 107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 122 bits (308), Expect = 5e-36
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A K P+ VT D + ML+V ++++ + F+
Sbjct: 51 GDLAIELA----KSAPDRGK------VTGVDFSSEMLEVAKKKSELPLNIE-------FI 93
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
+A+AE LP E +S+ A TIAFG+RNVT I KAL E YRVLKPGGR + LEFS N++L+
Sbjct: 94 QADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLK 153
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 119 bits (300), Expect = 1e-34
Identities = 49/119 (41%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD F + + V DIN ML GE++A++ K + FL
Sbjct: 59 GDWTFGLSDSAGS----------SGKVVGLDINENMLKEGEKKAKEEGKY-----NIEFL 103
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ NAEELP E DS+ TI+FG+RN K L EA+RVLKPGGR +CLEFS N +L
Sbjct: 104 QGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLL 162
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 71.8 bits (176), Expect = 3e-16
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L+E P HV D + ML VG Q+ +D + + NA ELP + +S+
Sbjct: 63 LAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELPFDDNSFDY 117
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
TI FG+RNV + L E YRV+KPGG+ +CLE S
Sbjct: 118 VTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 66.5 bits (163), Expect = 1e-15
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ VT D++ ML + +R +F+ +AE+LP +S+
Sbjct: 14 LARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAEDLPFPDESFDVVV 62
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + ++ ++AL E RVLKPGG+ +
Sbjct: 63 SSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 56.1 bits (135), Expect = 2e-10
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V D + L V R K N + ++E +A +LP + + A T+ +G+RNV
Sbjct: 101 VMGLDFSSEQLAVAASRQELKAKSCYKN--IEWIEGDATDLPFDDCYFDAITMGYGLRNV 158
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNN----SMLQW 131
KA+ E YRVLKPG R L+F+ SM +W
Sbjct: 159 VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEW 197
>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase.
Length = 160
Score = 54.7 bits (131), Expect = 2e-10
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 53 RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112
+AR +K + ++E +A +LP + + A T+ +G+RNV +A+ E YRVLKP
Sbjct: 20 KARSCYKC------IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73
Query: 113 GGRFLCLEFSHVNNSM 128
G R L+F+ N S+
Sbjct: 74 GSRVSILDFNKSNQSV 89
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 49.7 bits (119), Expect = 7e-09
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD-SYS-A 86
L+ VT DI+ L++ + A L + L+ +AEELP E+D S+
Sbjct: 16 LASGPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVI 70
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ V + + L EA R+LKPGG +
Sbjct: 71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 51.5 bits (124), Expect = 9e-09
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 41 DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 100
D + AML + ++RA L P + F+ +A+ LP S+ A ++++
Sbjct: 51 DRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPA 104
Query: 101 KALSEAYRVLKPGGRFLCLEF 121
+AL+E RVL+PGGR + L+
Sbjct: 105 RALAEIARVLRPGGRVVVLDT 125
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 49.7 bits (119), Expect = 2e-08
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
G + F +KL P V DI+ ++ ++ A+ L + F+
Sbjct: 15 GYLTFILA---EKLGPG-------AEVVGIDISEEAIEKAKENAKKLGY-----ENVEFI 59
Query: 71 EANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+ + EELP +E +S+ + ++ DK L E RVLKPGG + + ++
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSE 118
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 45.8 bits (109), Expect = 2e-07
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA---F 91
VT DI++ L++ ++R RD P++RF+ A+A +LP E S+ A
Sbjct: 21 SSVTGVDISKEALELAKERLRD------KGPKVRFVVADARDLPFEEGSFDLVICAGLSL 74
Query: 92 GIRNVTRIDKALSEAYRVLKPGG 114
+ ++ L EA R+L+PGG
Sbjct: 75 DYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 40.8 bits (96), Expect = 1e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T DI+ A L+ +R L + R+R +A +L S + + + +
Sbjct: 22 EYTGVDISPAALEAAAERLAAL--GLLDAVRVRLDVLDAIDLDPGS--FDVVVASNVLHH 77
Query: 96 VTRIDKALSEAYRVLKPGGRF 116
+ L R+LKPGG
Sbjct: 78 LADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 39.6 bits (93), Expect = 4e-05
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D++ ML++ + A+ PR+ F++ +A + + + A I G +
Sbjct: 27 RVTGVDLSPEMLELARENAKLAL-----GPRITFVQGDAPDALDLLEGFDAVFIGGGGGD 81
Query: 96 VTRIDKALSEAYRVLKPGGRFL 117
+ + L +LKPGGR +
Sbjct: 82 L---LELLDALASLLKPGGRLV 100
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 39.9 bits (94), Expect = 1e-04
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRF 116
F E LP+ +S I I N ++ EA+RVLKPGGRF
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRF 179
>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase.
Length = 340
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 68 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 115
+ +E +AE+LP +D Y A I + + EAYRVLK GG+
Sbjct: 163 KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 37.6 bits (84), Expect = 7e-04
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+V D++ ML + RA + +A LP E + I+ + +
Sbjct: 74 YVVGVDLSPEMLALARARAEGA---GLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ KAL E RVLKPGGR + + +
Sbjct: 131 LLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 35.0 bits (81), Expect = 0.005
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
DI+ ML + + + ++F+ +AE+LP+E S+ ++
Sbjct: 60 EFIANDISAGMLAQAKTKL---------SENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ +ALSE RVLKPGG F
Sbjct: 111 CDDLSQALSELARVLKPGGLLAFSTFGP 138
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 32.8 bits (75), Expect = 0.014
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IESDSYSA-------- 86
V +++ AR + PR+R + +A EL + S+
Sbjct: 26 RVVGVELDPEAAA----LARRRLALAGLAPRVRVVVGDARELLELPDGSFDLVLGNPPYG 81
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119
N D+ L+ A R+LKPGG + +
Sbjct: 82 PRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 33.2 bits (76), Expect = 0.021
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 36 HVTVADINRAMLDVGEQR-ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 94
VT D++ ML Q+ A D +L + E LP+ + ++ ++
Sbjct: 66 QVTALDLSPPMLAQARQKDAAD-----------HYLAGDIESLPLATATFDLAWSNLAVQ 114
Query: 95 NVTRIDKALSEAYRVLKPGGR 115
+ AL E YRV++PGG
Sbjct: 115 WCGNLSTALRELYRVVRPGGV 135
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 31.6 bits (72), Expect = 0.087
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 72 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 105
AN + LP+ S SY +T+A T I+KALS
Sbjct: 153 ANEKGLPVLSTSYDTFTVA------TMINKALSN 180
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 30.2 bits (68), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 95 NVTRIDKALSEAYRVLKPGGRFL 117
N I K L AY VLKPGGR +
Sbjct: 512 NHEVIKKGLQSAYEVLKPGGRII 534
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial. This
model describes bacterial (and mitochondrial and
chloroplast) class of ribosomal protein L3. A separate
model describes the archaeal form, where both belong to
Pfam family pfam00297. The name is phrased to meet the
needs of bacterial genome annotation. Organellar forms
typically will have transit peptides, N-terminal to the
region modeled here.
Length = 202
Score = 29.7 bits (68), Expect = 0.34
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 79 IESDSYSAYTIAFGIRNVTRIDKALS--------EAYRVLK 111
+E D YSA + FG + R++K + E R L+
Sbjct: 38 VEKDGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLR 78
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 28.5 bits (64), Expect = 0.82
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ DS Y + +++ L E RVLKPGG
Sbjct: 21 DKDSIEEY--------LEWLEEWLKEVRRVLKPGGSIFI 51
>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin
of TRX) subfamily; PICOT is a protein that interacts
with protein kinase C (PKC) theta, a calcium independent
PKC isoform selectively expressed in skeletal muscle and
T lymphocytes. PICOT contains an N-terminal TRX-like
domain, which does not contain the catalytic CXXC motif,
followed by one to three glutaredoxin domains. The
TRX-like domain is required for interaction with PKC
theta. PICOT inhibits the activation of c-Jun N-terminal
kinase and the transcription factors, AP-1 and NF-kB,
induced by PKC theta or T-cell activating stimuli.
Length = 97
Score = 27.6 bits (62), Expect = 0.84
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 45 AMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY---SAYTIAFGIRNVTRID 100
M V E+ A++ P + FL AEELP S+ + + T F RN T +D
Sbjct: 31 QMNQVFEELAKE------AFPSVLFLSIEAEELPEISEKFEITAVPTFVF-FRNGTIVD 82
>gnl|CDD|232905 TIGR00284, TIGR00284, dihydropteroate synthase-related protein.
This protein has been found so far only in the Archaea,
and in particular in those archaea that lack a
bacterial-type dihydropteroate synthase. The central
region of this protein shows considerable homology to
the amino-terminal half of dihydropteroate synthases,
while the carboxyl-terminal region shows homology to the
small, uncharacterized protein slr0651 of Synechocystis
PCC6803 [Unknown function, General].
Length = 499
Score = 28.7 bits (64), Expect = 1.0
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50
P DI R DK P E + V I +M G
Sbjct: 381 PKDIGTRLFVVKDKRRPPEPVEPPGERINVDYIEPSMDRTG 421
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype PREFRAN.
This family is the long protein of a novel CRISPR
subtype, PREFRAN, which is most common in Prevotella and
Francisella, although widely distributed. The PREFRAN
type has Cas1, Cas2, and Cas4, but lacks the helicase
Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 28.7 bits (64), Expect = 1.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 56 DLFKVPVPNPRLRFLEA-NAEELPIESDSYSAYTIAF-GIRNVTRIDKALSEAYRVLKPG 113
D PV N F ++ N +LP ++D+ AY IA G+ + +I + G
Sbjct: 1215 DYLISPVANDEGNFFDSRNDPKLPKDADANGAYNIAKKGLMLIRKIKQE--------YRG 1266
Query: 114 GRFLCLEFSH 123
+ L L S+
Sbjct: 1267 DKKLDLSISN 1276
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated.
Length = 210
Score = 27.8 bits (63), Expect = 1.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 79 IESDSYSAYTIAFGIRNVTRIDKAL--------SEAYRVLK 111
+E D Y+A + FG + R++K E R L+
Sbjct: 41 VEKDGYNAVQLGFGDKKEKRVNKPEAGHFAKAGVEPKRHLR 81
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 27.5 bits (61), Expect = 1.5
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 61 PVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
P P L F +A + + + Y T + ++ L + +LKPGG L
Sbjct: 52 PSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLIST 111
Query: 121 F 121
Sbjct: 112 P 112
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 27.7 bits (62), Expect = 1.7
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + ++V + A + V + + +A E+L + T + +
Sbjct: 83 SVTGIDASEKPIEVAKLHAL---ESGV---NIDYRQATVEDLASAGGQFDVVTCMEVLEH 136
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
V + L +++KPGG L S +N ++ +
Sbjct: 137 VPDPESFLRACAKLVKPGGI---LFLSTINRTLKAY 169
>gnl|CDD|226016 COG3485, PcaH, Protocatechuate 3,4-dioxygenase beta subunit
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 226
Score = 27.4 bits (61), Expect = 1.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 53 RARDLFKVPVPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111
R D PVP+ + +A+A+ DS A F R T D+ +R +K
Sbjct: 78 RVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIK 137
Query: 112 PG 113
PG
Sbjct: 138 PG 139
>gnl|CDD|216692 pfam01771, Herpes_alk_exo, Herpesvirus alkaline exonuclease. This
family includes various alkaline exonucleases from
members of the herpesviridae. Alkaline exonuclease
appears to have an important role in the replication of
herpes simplex virus.
Length = 458
Score = 27.3 bits (61), Expect = 2.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 114
K P P+P+ E PI+++ Y A +AFG+RN + K L A V
Sbjct: 124 YWAVKGPNPSPKW------FEPSPIKNNHYFASALAFGLRN-EPVVKTLVAALVVTPDLE 176
Query: 115 RF 116
Sbjct: 177 VV 178
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 27.2 bits (61), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 99 IDKALSEAYRVLKPGGRFLCL 119
ID+ L E R LKPGGR L L
Sbjct: 127 IDRFLDEVGRYLKPGGRILLL 147
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 26.7 bits (59), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 94 RNVTRIDKALSEAYRVLKPGGRFL 117
R++ ++ AL A VLKP G F+
Sbjct: 120 RSIDLVELALDIAKEVLKPKGNFV 143
>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 219
Score = 26.7 bits (59), Expect = 3.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 96 VTRIDKALSEAYRVLKPGG 114
T I L EA R+LK GG
Sbjct: 134 GTNIADFLKEANRILKNGG 152
>gnl|CDD|143641 cd07881, RHD-n_NFAT, N-terminal sub-domain of the Rel homology
domain (RHD) of nuclear factor of activated T-cells
(NFAT) proteins. Proteins containing the Rel homology
domain (RHD) are metazoan transcription factors. The RHD
is composed of two structural sub-domains; this model
characterizes the N-terminal RHD sub-domain of the NFAT
family of transcription factors. NFAT transcription
complexes are a target of calcineurin, a calcium
dependent phosphatase, and activate genes that are
mainly involved in cell-cell interaction. Upon
de-phosphorylation of the nuclear localization signal,
NFAT enters the nucleus and acts as a transcription
factor; its export from the nucleus is triggered by
phosphorylation via export kinases. NFATs play important
roles in mediating the immune response, and are found in
T cells, B Cells, NK cells, mast cells, and monocytes.
NFATs are also found in various non-hematopoietic cell
types, where they play roles in development.
Length = 175
Score = 26.3 bits (58), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 48 DVGEQ--RARDLFKVPVPNPRLRFLEANAEELPIE 80
D+G + R R +F+V +P P R L PIE
Sbjct: 137 DIGRKNTRVRLVFRVHIPQPSGRVLSLQVASNPIE 171
>gnl|CDD|239547 cd03464, 3,4-PCD_beta, Protocatechuate 3,4-dioxygenase (3,4-PCD)
, beta subunit. 3,4-PCD catalyzes the oxidative ring
cleavage of 3,4-dihydroxybenzoate to produce
beta-carboxy-cis,cis-muconate. 3,4-PCDs are large
aggregates of 12 protomers, each composed of an alpha-
and beta-subunit and an Fe3+ ion bound in the
beta-subunit at the alpha-subunit-beta-subunit
interface. 3,4-PCD is a member of the aromatic
dioxygenases which are non-heme iron intradiol-cleaving
enzymes that break the C1-C2 bond and utilize Fe3+.
Length = 220
Score = 26.5 bits (59), Expect = 3.9
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 26 PNTLSEHCAPHVTVADINRAMLD---------VGEQ-----RARDLFKVPVPNPRLRFLE 71
P+TLSE P D+ D +GE+ R D PVPN + +
Sbjct: 30 PHTLSELTGPVFGHDDLGPLDNDLTRNHNGEPIGERIIVHGRVLDEDGRPVPNTLVEIWQ 89
Query: 72 ANA 74
ANA
Sbjct: 90 ANA 92
>gnl|CDD|216706 pfam01795, Methyltransf_5, MraW methylase family. Members of this
family are probably SAM dependent methyltransferases
based on Escherichia coli rsmH. This family appears to
be related to pfam01596.
Length = 310
Score = 26.9 bits (60), Expect = 3.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEF 121
+ +AL +A +L PGGR + F
Sbjct: 218 ESLKEALEQAPDLLAPGGRLSVISF 242
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 26.6 bits (59), Expect = 3.9
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 52 QRARDLFKVPVPNPRLRFLEANAEELPIESDSY-------SAYTIAFGIRNVTRIDKA-- 102
RA L + ++ F A+A P E + S + DK
Sbjct: 155 ARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMP---------DKRKF 205
Query: 103 LSEAYRVLKPGGRFLCLEFSH 123
+ E RV PGGR + + + H
Sbjct: 206 VQELARVAAPGGRIIIVTWCH 226
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 26.4 bits (59), Expect = 4.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 40 ADINRAMLDVGEQRARDLFKVPVPNP 65
+DI +A+ +Q A DL K+PV
Sbjct: 224 SDIRKAIRIARKQAAPDLLKLPVSAA 249
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 26.3 bits (58), Expect = 4.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 100 DKALSEAYRVLKPGGRFLCLE 120
K + ++ LKPGG +L +
Sbjct: 146 AKVNAAVFKALKPGGVYLVED 166
>gnl|CDD|131475 TIGR02422, protocat_beta, protocatechuate 3,4-dioxygenase, beta
subunit. This model represents the beta chain of
protocatechuate 3,4-dioxygenase. The most closely
related family outside this family is that of the alpha
chain (TIGR02423), typically encoded in an adjacent
locus. This enzyme acts in the degradation of aromatic
compounds by way of p-hydroxybenzoate to succinate and
acetyl-CoA [Energy metabolism, Other].
Length = 220
Score = 26.5 bits (59), Expect = 4.3
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 26 PNTLSEHCAPHVTVADI---------NRAMLDVGEQ-----RARDLFKVPVPNPRLRFLE 71
P +LSE P D+ +GE+ R D PVPN + +
Sbjct: 25 PQSLSELTGPVFGHDDLGPIDNDLTLAHGGEPIGERIIVHGRVLDEDGRPVPNTLVEVWQ 84
Query: 72 ANA 74
ANA
Sbjct: 85 ANA 87
>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein. This family is
found exclusively in the Archaea [Hypothetical proteins,
Conserved].
Length = 329
Score = 26.2 bits (58), Expect = 5.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 72 ANAEELPIESDS---------YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116
+A +LP+ S+S Y T A G + +++L E + VLK G
Sbjct: 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWI 290
>gnl|CDD|234597 PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltranserfase;
Provisional.
Length = 296
Score = 26.2 bits (59), Expect = 5.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 99 IDKALSEAYRVLKPGGR 115
+++AL A +LKPGGR
Sbjct: 215 LERALEAALDLLKPGGR 231
>gnl|CDD|176774 cd08796, Death_IRAK-M, Death domain of Interleukin 1 Receptor
Associated Kinase-M. Death Domain (DD) of
Interleukin-1 Receptor-Associated Kinase M (IRAK-M).
IRAKs are essential components of innate immunity and
inflammation in mammals and other vertebrates. They are
involved in signal transduction pathways involving IL-1
and IL-18 receptors, Toll-like receptors(TLRs), nuclear
factor-kappaB (NF-kB), and mitogen-activated protein
kinases (MAPKs). IRAKs contain an N-terminal DD domain
and a C-terminal kinase domain. IRAK-M, also called
IRAK-3, is an inactive kinase present only in
macrophages in an inducible manner. It is a negative
regulator of TLR signaling and it contributes to the
attenuation of NF-kB activation. DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or
heterodimers by associating with other members of the
DD superfamily including CARD (Caspase activation and
recruitment domain), DED (Death Effector Domain), and
PYRIN. They serve as adaptors in signaling pathways and
can recruit other proteins into signaling complexes.
Length = 89
Score = 25.3 bits (55), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 TVADINRAMLDVGEQRARDLF 58
TV D+ + + ++G RA LF
Sbjct: 68 TVGDLLQVLDEMGHARAISLF 88
>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria. These basic
secretory proteins (BSPs) are believed to be part of the
plants defence mechanism against pathogens.
Length = 203
Score = 26.1 bits (58), Expect = 5.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 16 RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50
RFL+Y++ P V +N ML G
Sbjct: 158 RFLDYLEDRSPGF----------VRKLNDKMLRDG 182
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 26.5 bits (59), Expect = 5.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 103 LSEAYRVLKPGGRF 116
L+EA RVLKPGG
Sbjct: 218 LNEALRVLKPGGTL 231
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 25.6 bits (57), Expect = 6.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLC 118
++ + AL A VL+PGG F+
Sbjct: 108 ISLQLVLAALLLALEVLRPGGNFVV 132
>gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.
Length = 1112
Score = 26.2 bits (59), Expect = 7.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113
EAN E Y T+ + ++AL E YR L+PG
Sbjct: 252 LAEANDEITEELDGPYIRNTLE--KDPTSSREEALVEIYRRLRPG 294
>gnl|CDD|232778 TIGR00006, TIGR00006, 16S rRNA
(cytosine(1402)-N(4))-methyltransferase. This model
describes RsmH, a 16S rRNA methyltransferase.
Previously, this gene was designated MraW, known to be
essential in E. coli and widely conserved in bacteria
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 307
Score = 25.8 bits (57), Expect = 7.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEF 121
+++AL A +L PGGR + F
Sbjct: 215 EELEEALQFAPNLLAPGGRLSIISF 239
>gnl|CDD|216130 pfam00809, Pterin_bind, Pterin binding enzyme. This family
includes a variety of pterin binding enzymes that all
adopt a TIM barrel fold. The family includes
dihydropteroate synthase EC:2.5.1.15 as well as a group
methyltransferase enzymes including
methyltetrahydrofolate, corrinoid iron-sulfur protein
methyltransferase (MeTr) that catalyzes a key step in
the Wood-Ljungdahl pathway of carbon dioxide fixation.
It transfers the N5-methyl group from
methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide
centre in another protein, the corrinoid iron-sulfur
protein. MeTr is a member of a family of proteins that
includes methionine synthase and methanogenic enzymes
that activate the methyl group of
methyltetra-hydromethano(or -sarcino)pterin.
Length = 210
Score = 25.7 bits (57), Expect = 7.3
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 46 MLDVGEQRAR-DLFKVPVPN------PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 98
++D+G + R V P L L +++PI D+++A ++
Sbjct: 35 IIDIGGESTRPGAGMVSGEEELERLVPVLEALRDLYQDVPISIDTFNAEVAEAALKAGAD 94
Query: 99 I 99
I
Sbjct: 95 I 95
>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane].
Length = 314
Score = 25.6 bits (57), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 98 RIDKALSEAYRVLKPGGRFLCLEF 121
+++AL A +LKPGGR + F
Sbjct: 222 ELEEALEAALDLLKPGGRLAVISF 245
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 25.3 bits (56), Expect = 8.5
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 63 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119
+ + A AEE E Y T R V +++ A +LKPGG FL
Sbjct: 96 NLENVTIVHARAEEYQHEEQ-YDVITS----RAVASLNELTEWALPLLKPGGYFLAY 147
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 25.9 bits (57), Expect = 8.6
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 37 VTVADINR-AMLDVGEQRAR----DLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
VT+A NR +LD R+R FK+P RL LE A++ P+ D+ Y A
Sbjct: 256 VTIAATNRPELLDPA-IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAA 313
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 25.6 bits (57), Expect = 9.7
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 36 HVTVADINRAMLDVGEQR-ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 94
V V DI+ L+ + A D V + R E E +
Sbjct: 185 RVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGA---------DVVI--- 232
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFS 122
+ T ++ EA ++ GGR + + S
Sbjct: 233 DATGNPASMEEAVELVAHGGRVVLVGLS 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.431
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,936,272
Number of extensions: 624591
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 68
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)