RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy890
(131 letters)
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 138 bits (349), Expect = 3e-42
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 16/125 (12%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G I+ + VT DIN + + E AR + F
Sbjct: 41 SGKISLELASKG-------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFSHVNN 126
NA L S+ + + +V + + E +RVLKPG +EF +
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWH 147
Query: 127 SMLQW 131
L
Sbjct: 148 LKLYR 152
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 125 bits (315), Expect = 8e-37
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G +A F +V V D+ +L V + ++ +
Sbjct: 48 GGHVANAFAPFVK-------------KVVAFDLTEDILKVARAFIEGN-----GHQQVEY 89
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
++ +AE++P + + T + +SEAYRVLK GG+ L ++ S N
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF 149
Query: 130 QW 131
Sbjct: 150 DV 151
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 112 bits (282), Expect = 4e-32
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G A F YV D + M++V A++ V N +RF
Sbjct: 32 AGHTALAFSPYV-------------QECIGVDATKEMVEVASSFAQEK---GVEN--VRF 73
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ AE LP DS+ T + + + + KA+ E RVLK GRFL ++ + +L
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133
Query: 130 QW 131
Sbjct: 134 DE 135
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 107 bits (268), Expect = 3e-30
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G V + V D+ M++ ++ L + N +
Sbjct: 48 AGFYLPYLSKMVGE----------KGKVYAIDVQEEMVNYAWEKVNKL---GLKN--VEV 92
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
L++ ++P+ ++ +AF ++ K L E RV KP +++
Sbjct: 93 LKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 96.8 bits (241), Expect = 3e-26
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
PG ++ L++ + D ++ M ++ + D N R++
Sbjct: 54 PGALSIA------------LAKQSDFSIRALDFSKHMNEIALKNIADA----NLNDRIQI 97
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
++ + +PIE + + + A E YR+LK GG+
Sbjct: 98 VQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG 151
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 96.4 bits (240), Expect = 4e-26
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + AML VG +RA P ++ A E LP +S+ + +
Sbjct: 58 QKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGESFDVVLLFTTLEF 107
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V +++ L EA RVL+PGG +
Sbjct: 108 VEDVERVLLEARRVLRPGGALVVGVLEA 135
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 91.1 bits (226), Expect = 1e-23
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA-YTIAFGIR 94
V + D ++ ML+V ++ +EA AE+LP S ++ A + +
Sbjct: 78 EVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEAVLALGDVLS 126
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFS 122
V DKA SE RVL P G + +
Sbjct: 127 YVENKDKAFSEIRRVLVPDGLLIATVDN 154
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 88.4 bits (219), Expect = 1e-22
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+T DI+ L+ + ++FL+AN LP E S+ + F + +
Sbjct: 63 EITSIDISPESLEKARENTEKN-----GIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH 117
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++AL +VLKPGG +E H
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDH 145
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 86.0 bits (213), Expect = 6e-22
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T+ D++ ML++ + R R N +++++EA+ + E + Y A I +
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFE-EKYDMVVSALSIHH 121
Query: 96 VTRIDKA--LSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ DK +Y +LK G F+ + H + ++
Sbjct: 122 LEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN 159
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 81.9 bits (202), Expect = 3e-20
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
D + AML+V Q+ + + +++ ++A+A +P+ +S +
Sbjct: 63 RYIALDADAAMLEVFRQKIAGV------DRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V K L+EA RVLKPGG L
Sbjct: 117 VPDWPKVLAEAIRVLKPGGALLEGWDQA 144
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 81.1 bits (200), Expect = 5e-20
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
LS DI+ M+ G++R P L F++ + LP E++ + A
Sbjct: 71 LSRTGY-KAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSSLPFENEQFEAIM 121
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ +AL+E RVLK G
Sbjct: 122 AINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS 164
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 78.3 bits (193), Expect = 3e-19
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
+ + M ++ +R + L+ AE LP++ +S+ + I V
Sbjct: 68 KIGVEPSERMAEIARKRG------------VFVLKGTAENLPLKDESFDFALMVTTICFV 115
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSH 123
++AL EAYR+LK GG +
Sbjct: 116 DDPERALKEAYRILKKGGYLIVGIVDR 142
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 77.0 bits (190), Expect = 5e-19
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 26/119 (21%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G L + K + DIN L +++
Sbjct: 28 NGFYCKYLLEFATK-------------LYCIDINVIALKEVKEK-------------FDS 61
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ ++ I +S A ++ +SE R+LK GR + +++ N +
Sbjct: 62 VITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI 120
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 71.9 bits (176), Expect = 1e-16
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI+ M+ + A+ + F+ +A +L E ++ I +
Sbjct: 62 EVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
Query: 96 VTRID--KALSEAYRVLKPGGRFLCLEFSH 123
++ + E RVLKP G+F+
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 72.0 bits (176), Expect = 2e-16
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 36 HVTVADIN----RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIESDSYSAYTIA 90
HVT DI A L +G+ L + F +++L PI + +A
Sbjct: 70 HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLA 129
Query: 91 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ + + E+S ++ Q
Sbjct: 130 HSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQI 170
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 70.4 bits (172), Expect = 1e-15
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L T D +L + R L FLE +A E+ + D Y
Sbjct: 40 LMPLLPEGSKYTGIDSGETLLAEARELFRLL------PYDSEFLEGDATEIELN-DKYDI 92
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+ ++T + L + +K GG+ +C E ++N
Sbjct: 93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISN 132
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 69.2 bits (169), Expect = 2e-15
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + + M P++ + AE L + S I +
Sbjct: 58 FVYAVEPSIVMRQQAVVH-----------PQVEWFTGYAENLALPDKSVDGVISILAIHH 106
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++K+ E R+++ G L
Sbjct: 107 FSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 65.5 bits (159), Expect = 9e-14
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 36 HVTVADINRAMLDVGEQRAR---DLFKVPVPNPRLRFLEANAEEL------PIESDSYSA 86
V D+ L+V + + F +RFL+ E L + S
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDI 169
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121
T E +RVL+ GG +
Sbjct: 170 VISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV 204
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 63.7 bits (155), Expect = 2e-13
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ H VT D +D+ + AR + + N R+ + + ++LP ++
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNAR---QSGLQN-RVTGIVGSMDDLPFRNEELDLIW 119
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
I N+ ++ L+E + LK GG E S
Sbjct: 120 SEGAIYNIGF-ERGLNEWRKYLKKGGYLAVSECS 152
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 63.0 bits (153), Expect = 2e-13
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 16 RFLNYVDKLPPN---------------TLSEHCAPHVTVADINRAMLDVGEQRARDLFKV 60
RFL Y ++ + ++ +I+ L E +R+
Sbjct: 13 RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN--- 69
Query: 61 PVPNPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116
N +L + + +LP + +S YS TI +N + +A+ E RVLKPGG
Sbjct: 70 ---NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAIDEIKRVLKPGGLA 124
Query: 117 LCLEFSH 123
+
Sbjct: 125 CINFLTT 131
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 62.9 bits (153), Expect = 3e-13
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
EH A +V D++ ML D + + A+ ++L + DS+
Sbjct: 61 AHEHGASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLPQDSFDLAY 112
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + V + + ++ L PGG F+
Sbjct: 113 SSLALHYVEDVARLFRTVHQALSPGGHFVF 142
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 62.6 bits (152), Expect = 4e-13
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + +R M + +++ E + + S
Sbjct: 63 LLLAGR-TVYGIEPSREMRMIAKEKLPK---------EFSITEGDFLSFEVP-TSIDTIV 111
Query: 89 IAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ ++T +K A+++ ++L GG+ + + +
Sbjct: 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 62.2 bits (151), Expect = 6e-13
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
+EH A V D++ ML +++ P + + + E++ IE D+Y+
Sbjct: 62 AAEHGAKKVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAIEDIAIEPDAYNVVL 113
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + + D + Y LK G F+
Sbjct: 114 SSLALHYIASFDDICKKVYINLKSSGSFIF 143
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 59.9 bits (145), Expect = 6e-12
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+++ +T D+ +++ + A K + R++ + + + LP +++
Sbjct: 64 LADYVKGQITGIDLFPDFIEIFNENAV---KANCAD-RVKGITGSMDNLPFQNEELDLIW 119
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
I N+ ++ ++E + LK GG E S
Sbjct: 120 SEGAIYNIGF-ERGMNEWSKYLKKGGFIAVSEASW 153
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 57.4 bits (138), Expect = 3e-11
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + DI L + + + ++ E DSY
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGEE-----GKRVRNYFCCGLQDFTPEPDSYDVIW 151
Query: 89 IAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVNNSML 129
I + I ++T + L L+P G + + +L
Sbjct: 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 56.7 bits (137), Expect = 4e-11
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY----SAYTIAF 91
V D++ ++D +Q P R++ + I + SA
Sbjct: 70 DVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDLIVSAGN-VM 118
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
G + AL+ +R L GR + + F
Sbjct: 119 GFLAEDGREPALANIHRALGADGRAV-IGFGA 149
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 57.0 bits (137), Expect = 6e-11
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + + + ML+ ++ + P +F+ A+ E + ++Y
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYDLIV 163
Query: 89 IAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF 121
I + +T D K + L P G E
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G+I + L+ V P + V + + + ++ + N + +
Sbjct: 63 AGEIDLQILSKVQAQYPGVCI-----NNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAW 115
Query: 70 LEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + E E + + + V I L + +L + L + S
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 55.3 bits (133), Expect = 2e-10
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + L +Q A++ ++ +++N + I +D++ F
Sbjct: 53 EVTAVDQSSVGLAKAKQLAQE------KGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFS 122
+ + + Y+ LKPGG F+ F+
Sbjct: 107 SSLRQQLYPKVYQGLKPGGVFILEGFA 133
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 55.6 bits (134), Expect = 2e-10
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ VT I+R ++ RA + N R+ F A+A +LP E S+ A
Sbjct: 79 LATARDVRVTGISISRPQVNQANARAT---AAGLAN-RVTFSYADAMDLPFEDASFDAVW 134
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++ +AL E RVL+PGG +F
Sbjct: 135 ALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 54.4 bits (131), Expect = 5e-10
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
VT D++ ML++ +++A + N + F + EL + + A TI
Sbjct: 56 EVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVDAITILCDSLN 108
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
++ + + A R+L GG+ L
Sbjct: 109 YLQTEADVKQTFDSAARLLTDGGKLL 134
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 53.7 bits (129), Expect = 5e-10
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + ++++ Q P + F +L ++ + + +
Sbjct: 65 QIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114
Query: 96 VTRID--KALSEAYRVLKPGGRFLC 118
+ + AL ++ GG L
Sbjct: 115 MGPGELPDALVALRMAVEDGGGLLM 139
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 54.4 bits (131), Expect = 5e-10
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAY 87
++E H DI ++++ +R N ++ F + +++ Y
Sbjct: 73 INEKYGAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILTKEFPENNFDLIY 125
Query: 88 TI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125
+ A ++ +K + Y+ LKP G L ++
Sbjct: 126 SRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 54.4 bits (131), Expect = 6e-10
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
+++ A V D M++ Q P L F A+A ++ A
Sbjct: 75 IAQSGA-EVLGTDNAATMIEKARQNY----------PHLHFDVADARNFRVD-KPLDAVF 122
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ V + A++ ++ LK GGRF+ N +
Sbjct: 123 SNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 53.3 bits (128), Expect = 1e-09
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTI---AFG 92
V D++ ML V ++A++ N ++ FL+ + E+ + + + A T+
Sbjct: 65 EVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117
Query: 93 IRNVTRIDKALSEAYRVLKPGGRFL 117
+ + K S+ LKPGG F+
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFI 142
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 52.7 bits (126), Expect = 2e-09
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL------PIE 80
+++ P + +D++ M+ E P + F +++++ ++
Sbjct: 54 MAQELKPFEQIIGSDLSATMIKTAEVIKEG---SPDTYKNVSFKISSSDDFKFLGADSVD 110
Query: 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
T + +K AY L+ G ++
Sbjct: 111 KQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYADP 153
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 52.0 bits (124), Expect = 4e-09
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ D + LD + A ++ +A +L + Y T
Sbjct: 145 QLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIY 199
Query: 96 VT---RIDKALSEAYRVLKPGGRFLCLEFS 122
R+ + ++ LKPGG + +
Sbjct: 200 EPDDARVTELYRRFWQALKPGGALVTSFLT 229
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 50.7 bits (121), Expect = 9e-09
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + M+ + + F + + + + + A A + +
Sbjct: 70 RVTALDGSAEMIAEAGRHGL---------DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAH 119
Query: 96 VTR--IDKALSEAYRVLKPGGRFLCLEFSH 123
V + + PGG ++ +
Sbjct: 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 50.4 bits (120), Expect = 1e-08
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY---- 84
L P+VT D + ++ + P+LR+ + +L S S+
Sbjct: 60 LFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDVVL 112
Query: 85 -----------SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V +D+ LSE RVL PGGRF+ + +
Sbjct: 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 49.9 bits (119), Expect = 1e-08
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI + ++ DL + R+ ++ + + D + F +
Sbjct: 49 RVFGFDIQDKAIANTTKKLTDLNLID----RVTLIKDGHQNMDKYIDCPVK-AVMFNLGY 103
Query: 96 VTRIDK-----------ALSEAYRVLKPGGRFLCLEFS 122
+ D ALS+A +L GG + +
Sbjct: 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 50.7 bits (121), Expect = 1e-08
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG-IR 94
VT +++ ++L +R + R ++ + ++ + I+ G I
Sbjct: 106 EVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQGDMSAFALD-KRFGTVVISSGSIN 162
Query: 95 NVTRID--KALSEAYRVLKPGGRFL 117
+ D + L+PGG+FL
Sbjct: 163 ELDEADRRGLYASVREHLEPGGKFL 187
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 19/94 (20%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIESDS-YSA 86
A D + +L + A P E N ELP + +
Sbjct: 66 FGPQAA-RWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPFGL 114
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
G + + + P FL +
Sbjct: 115 IVSRRGPTS------VILRLPELAAPDAHFLYVG 142
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 50.2 bits (120), Expect = 2e-08
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAY 87
L + +I E+ + + + + + E+P E +SY +
Sbjct: 100 LVRKFGVSIDCLNIAPVQNKRNEEYNN---QAGLAD-NITVKYGSFLEIPCEDNSYDFIW 155
Query: 88 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + + K E RVLKP G +
Sbjct: 156 SQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMK 190
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 49.6 bits (118), Expect = 2e-08
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 26 PNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEANAEELP 78
P + A + + + D G + + + R + ++P
Sbjct: 51 PLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVP 110
Query: 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121
+E +S + T I L EA RVLKPGG E
Sbjct: 111 LEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEV 152
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 49.0 bits (117), Expect = 4e-08
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
+ D+++ ML E + R + R + L I + T
Sbjct: 61 NTWAVDLSQEMLSEAENKFRS------QGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFLC 118
I + + K LK GG F+
Sbjct: 114 YIIDSDDLKKYFKAVSNHLKEGGVFIF 140
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 46.4 bits (110), Expect = 3e-07
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
V +++ ML + +R P + + + +SA T F
Sbjct: 74 TVEGLELSADMLAIARRRN----------PDAVLHHGDMRDFSLG-RRFSAVTCMFSSIG 122
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
+ +D AL + P G +
Sbjct: 123 HLAGQAELDAALERFAAHVLPDGVVV 148
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 45.9 bits (109), Expect = 4e-07
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
+++ ML +R P + + + + +SA F
Sbjct: 64 DTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFRLG-RKFSAVVSMFSSVG 112
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
++ + A++ L+PGG +
Sbjct: 113 YLKTTEELGAAVASFAEHLEPGGVVV 138
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 44.8 bits (106), Expect = 1e-06
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAYTI-AFGI 93
V ++ A D G +RAR+L + + +R N + P + + +++ +
Sbjct: 142 RVEGVTLSAAQADFGNRRAREL---RIDD-HVRSRVCNMLDTPFDKGAVTASWNNESTMY 197
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + SE R LK GGR++ +
Sbjct: 198 VD---LHDLFSEHSRFLKVGGRYVTITGCW 224
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 44.4 bits (105), Expect = 2e-06
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY---- 84
L++ D +R ++D + + ++P+ Y
Sbjct: 70 LADRGI-EAVGVDGDRTLVDAARAAGAG------EVHLASYAQLAEAKVPVG-KDYDLIC 121
Query: 85 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + + I + LS +L PGG + + H
Sbjct: 122 ANFALLH-----QDIIELLSAMRTLLVPGGALVI-QTLH 154
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 44.0 bits (104), Expect = 2e-06
Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ HC +TV D+ + QR + + + + + ++ +
Sbjct: 69 LAPHCK-RLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFS-TAELFDLIV 119
Query: 89 IAFGI---RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+A + ++T++ A+ ++L PGG + F ++ +
Sbjct: 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV---FGSARDATCRR 162
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 43.0 bits (101), Expect = 5e-06
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 34 APHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
P +T D+++ + + A P++ F A++ LP S A +
Sbjct: 107 LPEITTFGLDVSKVAI----KAAAKR------YPQVTFCVASSHRLPFSDTSMDAIIRIY 156
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFL 117
E RV+KPGG +
Sbjct: 157 APCK-------AEELARVVKPGGWVI 175
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 41.9 bits (98), Expect = 1e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + ML + + + + EAN L + + + + N
Sbjct: 81 SVTSVDASDKMLKYALKERWNR-RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 96 V-----------TRIDKALSEAYRVLKPGGRFL 117
+ AL +++PGG +
Sbjct: 140 SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 41.6 bits (97), Expect = 2e-05
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 12/106 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA--EELPIESDSYSA 86
LS+ P V D++++ L++ + N R L+ + I S+ A
Sbjct: 74 LSQFF-PRVIGLDVSKSALEIAAKENTA------ANISYRLLDGLVPEQAAQIHSEIGDA 126
Query: 87 YTIAFGI---RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
V + + +L G +E
Sbjct: 127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFF 172
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 40.2 bits (94), Expect = 5e-05
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY--TIAFGI 93
V D N + E+ L + L + Y T+
Sbjct: 56 DVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNLTFD-RQYDFILSTVVLMF 109
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
I ++ R KPGG L +
Sbjct: 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 39.0 bits (90), Expect = 1e-04
Identities = 8/90 (8%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
LS V V +I + ++ + L + + + + +
Sbjct: 141 LSHVYGMRVNVVEIEPDIAELSRKVIEGL-----GVDGVNVITGDETVIDGLE-----FD 190
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + +R + R +
Sbjct: 191 VLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 39.0 bits (91), Expect = 1e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 28 TLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY 87
T + T D++ ++RA +L V R+ F+ +A ++
Sbjct: 53 TWARDHGITGTGIDMSSLFTAQAKRRAEEL---GVSE-RVHFIHNDAAGYV-ANEKCDV- 106
Query: 88 TIAFG-IRNVTRIDKALSEAYRVLKPGGRFL 117
G A + LKPGG L
Sbjct: 107 AACVGATWIAGGFAGAEELLAQSLKPGGIML 137
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 38.7 bits (90), Expect = 2e-04
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V D + + +R P + F + +A D+Y A + +
Sbjct: 67 DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAI------DAYDAVWAHACLLH 114
Query: 96 VTRID--KALSEAYRVLKPGGRFLC 118
V R + L +R LKPGG F
Sbjct: 115 VPRDELADVLKLIWRALKPGGLFYA 139
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 38.4 bits (89), Expect = 2e-04
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + +T D++ L++ ++R L RL+ ++ Y A T
Sbjct: 48 LKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107
Query: 89 IAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117
+ I ++ R+ + +P +
Sbjct: 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 38.6 bits (89), Expect = 2e-04
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS----- 83
DI ++ RAR++ + ++ F ++ ++
Sbjct: 82 YERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEFDVI 137
Query: 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
S ++ + +D A R L+PGG F+
Sbjct: 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 37.9 bits (87), Expect = 2e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 73 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127
N ++L + S++ + + L+E R+L+PGG E
Sbjct: 50 NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD 108
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 36.3 bits (84), Expect = 0.001
Identities = 7/93 (7%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 29 LSEHCA---PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYS 85
L V+ + + +++ + + ++P E + +
Sbjct: 46 LGAAIKENGTRVSGIEAFPEAAEQAKEKLDHV----------VLGDIETMDMPYEEEQFD 95
Query: 86 AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ ++ + + +K G L
Sbjct: 96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 36.3 bits (83), Expect = 0.001
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 41 DINRAMLDVGEQRARDLF-KVPVPNPRLRFLEANAEELPIE-SDSYSAYTIAF---GIRN 95
D + L ++ K + N + F+ A AE LP E + + +I F +
Sbjct: 55 DPVKENLFDISKKIIKKPSKGGLSN--VVFVIAAAESLPFELKNIADSISILFPWGTLLE 112
Query: 96 VTRIDKA--LSEAYRVLKPGGRF 116
LS + K F
Sbjct: 113 YVIKPNRDILSNVADLAKKEAHF 135
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 35.7 bits (82), Expect = 0.002
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 26/114 (22%)
Query: 14 AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN 73
A Y + P + TV +++ + + +R+ F +P PR++ +
Sbjct: 100 ACTMARYFADVYPQS-------RNTVVELDAELARL----SREWFDIP-RAPRVKIRVDD 147
Query: 74 A----EELPIES------DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117
A E S D ++ V +R L PGG ++
Sbjct: 148 ARMVAESFTPASRDVIIRDVFAGAITPQNFTTVE----FFEHCHRGLAPGGLYV 197
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 34.6 bits (80), Expect = 0.004
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF-- 91
T+ADINR + + ++ + + N +R + ++ E ++ Y+ I
Sbjct: 74 VKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE-NVKDRKYNK--IITNP 127
Query: 92 ----GIRNVTRIDKALSEAYRVLKPGGRFLC 118
G + RI + E +LK G
Sbjct: 128 PIRAGKEVLHRI---IEEGKELLKDNGEIWV 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.006
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 31/112 (27%)
Query: 16 RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75
RF D L T + H+++ + + + L L++L+ +
Sbjct: 273 RFKQVTDFLSAATTT-----HISLDHHSMTL---TPDEVKSLL--------LKYLDCRPQ 316
Query: 76 ELPIESDSYSAYTIA-FG--IR------------NVTRIDKALSEAYRVLKP 112
+LP E + + ++ IR N ++ + + VL+P
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Score = 34.1 bits (77), Expect = 0.010
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 42/146 (28%)
Query: 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLS-------EHCAPHVTVADINRAMLDVGEQR 53
M+ VFP +P LS + V ++++ +
Sbjct: 374 MFDRLS-VFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 54 AR----DL---FKVPVPN-PRL--RFLEA--------NAEELPIESDSYSAYTIAFGIRN 95
+ + KV + N L ++ + + +P D Y I ++N
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEF 121
+ ++ +R++ FL F
Sbjct: 484 IEHPERM--TLFRMV-----FLDFRF 502
Score = 29.1 bits (64), Expect = 0.47
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 31/134 (23%)
Query: 11 GDIAFRFL---------NYVDKLPPNTLSEHCAPHVTVA--DINRA------MLDVGEQR 53
DI F V +P + LS+ H+ ++ ++ +L E+
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 54 ARDLFKVPVPNPRLRFL-EANAEELPIESDSYSAYTIA----------FGIRNVTRIDK- 101
+ F V +FL E S Y F NV+R+
Sbjct: 79 VQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 102 -ALSEAYRVLKPGG 114
L +A L+P
Sbjct: 138 LKLRQALLELRPAK 151
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 33.8 bits (77), Expect = 0.008
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY--TIAFGI 93
VT D N + + N + + I+ ++Y T+ F
Sbjct: 144 DVTSWDHNENSIAFLNETKEKE------NLNISTALYDINAANIQ-ENYDFIVSTVVFMF 196
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEF 121
N R+ + GG L +
Sbjct: 197 LNRERVPSIIKNMKEHTNVGGYNLIVAA 224
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 33.7 bits (77), Expect = 0.008
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 17/97 (17%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
+ V D+ L QR DL + E L F +
Sbjct: 44 SKKVYAFDVQEQALGKTSQRLSDLGI-----ENTELILDGHENLDHYVRE-PIRAAIFNL 97
Query: 94 RNVTRIDK-----------ALSEAYRVLKPGGRFLCL 119
+ DK A+ + L+ GGR +
Sbjct: 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 31.8 bits (71), Expect = 0.044
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 12/106 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFK--VPVPNPRLRFLEANA------EELPIE 80
+ + DI + +QR D+ F+ A++ ++
Sbjct: 52 WKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111
Query: 81 SDSYSAYTIAFGI----RNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
+ + F + + D L A L PGG F+ +
Sbjct: 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 31.7 bits (72), Expect = 0.049
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 41 DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY--TIAFGIRNVTR 98
D++ L + + A +RFL A+A LP G+R +
Sbjct: 235 DLDEKRLGLAREAALAS-----GLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRK 289
Query: 99 ID------KALSEAYRVLKPGGRF 116
L A +L PGGR
Sbjct: 290 EGLFHLYWDFLRGALALLPPGGRV 313
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 31.4 bits (70), Expect = 0.072
Identities = 8/88 (9%), Positives = 20/88 (22%), Gaps = 3/88 (3%)
Query: 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNP-RLRFLEANAEELPIESDSYSAYTIAF 91
+ DI+ L + N + + E T
Sbjct: 745 SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLE 804
Query: 92 GIRNVT--RIDKALSEAYRVLKPGGRFL 117
I ++ + + + + P +
Sbjct: 805 VIEHMEEDQACEFGEKVLSLFHPKLLIV 832
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 30.8 bits (70), Expect = 0.10
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 103 LSEAYRVLKPGGRF 116
E +R+L PGGR
Sbjct: 80 WREVFRLLVPGGRL 93
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 30.8 bits (69), Expect = 0.10
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI-R 94
V DI+ + L + K F++ + + F
Sbjct: 90 FVVGLDISESALAKANETYGSSPK----AEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFS 122
Y +LKP G + L +
Sbjct: 146 EPEMRPAWAKSMYELLKPDGELITLMYP 173
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 30.4 bits (68), Expect = 0.12
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 46 MLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY------TIAFGIRNVTRI 99
M + + A K +PN L +L A AE LP S + ++ G+ +
Sbjct: 64 MEKISAKAAAKPAKGGLPN--LLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSSP- 120
Query: 100 DKALSEAYRVLKPGGRFL 117
+ L V +PG FL
Sbjct: 121 -EMLRGMAAVCRPGASFL 137
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 29.6 bits (67), Expect = 0.18
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 32 HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
V D N + E + + + +E +A E + +
Sbjct: 53 GRVRRVYAIDRNPEAISTTEMNLQR-HGLG---DNVTLMEGDAPEALCKIPDIDIAVVGG 108
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRF 116
+ I L LKPGGR
Sbjct: 109 SGGELQEI---LRIIKDKLKPGGRI 130
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 30.1 bits (67), Expect = 0.18
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + + + + P N R + ++ + + S + +
Sbjct: 126 QVISYEQRADHAEHARRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVL-----D 178
Query: 96 VTRIDKALSEAYRVLKPGGRFLCL 119
+ + L R+L GG +
Sbjct: 179 MLAPWEVLDAVSRLLVAGGVLMVY 202
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 29.8 bits (67), Expect = 0.21
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 103 LSEAYRVLKPGGRF 116
L+EA RVL P G
Sbjct: 89 LAEAERVLSPTGSI 102
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 69 FLEANAEELP---IESDSYSAYTIAFGIRNVTRIDK------ALSEAYRVLKPG 113
++ + + + Y I R+D AL E YR+++PG
Sbjct: 178 LSQSGHKRIETLFTNDLDHGPY-----ISETLRVDPTNDRLSALVEIYRMMRPG 226
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 29.0 bits (65), Expect = 0.34
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 103 LSEAYRVLKPGGRFLC 118
+ LKP G F+
Sbjct: 67 AKVVNKKLKPDGSFVV 82
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.9 bits (65), Expect = 0.47
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 52 QRARDLFKVPVPNPRLRFLEANA-EELPIESDSYSAYTIA-----FGIRNVTRIDKALSE 105
AR R+ F E N + E + + F R + +
Sbjct: 216 DAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREV---IGH 272
Query: 106 AYRVLKPGGRFLCLEF 121
A ++KPGG L L
Sbjct: 273 AAGLVKPGGALLILTM 288
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive
motor neuropathy, structural genomics; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 97
Score = 28.0 bits (62), Expect = 0.48
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 57 LFKVPVPNPRLRFLEANAEELPIESD 82
L KVPV L + + IE +
Sbjct: 45 LLKVPVSELLLSYESSKMPGREIELE 70
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 28.5 bits (63), Expect = 0.62
Identities = 7/103 (6%), Positives = 26/103 (25%), Gaps = 12/103 (11%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
+ +TV + + L + + + + + ++
Sbjct: 128 ILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDA----- 182
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
I ++ + + ++KPG + +
Sbjct: 183 -----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.69
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 36/112 (32%)
Query: 10 PGDIAFRFLNYV-DKLPPNTLSEHCA------------------PHVTVADI---NRAML 47
P ++ +FL YV + P+ + + H A + N L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 48 DVGEQ------RARDLFKVPVPNPRL-RFLEANAEELPIESDSYSAYTIAFG 92
++ AR + K P A + + I FG
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRA------VGEGNAQLVAI-FG 161
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 28.3 bits (64), Expect = 0.71
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 99 IDKALSEAYRVLKPGGR 115
I++AL + VL PGGR
Sbjct: 253 IEQALKSSLNVLAPGGR 269
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 28.1 bits (63), Expect = 0.83
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 103 LSEAYRVLKPGGRF 116
+ + L G
Sbjct: 57 IDKVLDKLDKDGSL 70
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 27.8 bits (63), Expect = 0.90
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 99 IDKALSEAYRVLKPGGR 115
+ + L +A VL PGGR
Sbjct: 212 LKEFLEQAAEVLAPGGR 228
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 27.1 bits (61), Expect = 1.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 99 IDKALSEAYRVLKPGGRF 116
+ + L +A +L PGGR
Sbjct: 224 LKEFLKKAEDLLNPGGRI 241
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 27.2 bits (60), Expect = 1.7
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 98 RIDKALSEAYRVLKPGGRFLC 118
R+ + LS Y +K +
Sbjct: 118 RLFELLSLCYSKMKYSSYIVI 138
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger,
ATP-binding, RNA-binding, nonsense-M mRNA decay,
nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Length = 97
Score = 26.2 bits (57), Expect = 2.1
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 40 ADINRA----MLDVGEQRARD-----LFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
D +A ML+ +QR+ + V +P L E ++ SA T+
Sbjct: 10 EDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMP 69
Query: 91 FGI 93
F +
Sbjct: 70 FVM 72
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 26.5 bits (59), Expect = 2.5
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 65 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119
F AE D +Y I R V R+ ++K G F+ L
Sbjct: 120 ENTTFCHDRAETFGQRKDVRESYDIVT-ARAVARLSVLSELCLPLVKKNGLFVAL 173
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 26.3 bits (58), Expect = 2.8
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
+ ++ ++ + + PR+R ++ A P F
Sbjct: 77 GGRAITIEPRADRIENIQKNIDT-YGLS---PRMRAVQGTA---PAALADLPLPEAVFI- 128
Query: 94 RNVTRIDKALSEAYRVLKPGGR 115
+ L PG R
Sbjct: 129 -GGGGSQALYDRLWEWLAPGTR 149
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 26.2 bits (58), Expect = 3.0
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 65 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119
R L AE L E+ AY A R V + L+ GG + +
Sbjct: 130 KGARALWGRAEVLAREAGHREAYARAVA-RAVAPLCVLSELLLPFLEVGGAAVAM 183
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 26.2 bits (58), Expect = 3.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 103 LSEAYRVLKPGGRFLCLEF 121
L + L G+ + +F
Sbjct: 254 LRKIKTALAVEGKVIVFDF 272
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 26.1 bits (57), Expect = 3.9
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 32 HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA-YT-- 88
V + + A + ++ + + L ++ +E E + T
Sbjct: 253 RMGAEVVGVEDDLASVLSLQKGLEAN------ALKAQALHSDVDEALTEEARFDIIVTNP 306
Query: 89 -IAFGIRNVTRIDKA-LSEAYRVLKPGGRFLC 118
G + + +A ++ A L+PGG F
Sbjct: 307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 25.8 bits (56), Expect = 5.2
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 2/94 (2%)
Query: 25 PPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY 84
T + H + + + + + RDL V + + +A
Sbjct: 87 ASGTTASHMSDIIGPRGRIYGV-EFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLV 145
Query: 85 SAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFL 117
+ + A L+ GG L
Sbjct: 146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML 179
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 25.8 bits (57), Expect = 5.7
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 98 RIDKALSEAYRVLKPGGRFLCLEF 121
+ L+ + + + +E
Sbjct: 265 EVISILTRVAQSIGKDSKVYIMET 288
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 25.6 bits (56), Expect = 5.9
Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
A + DIN +++ ++ + L K+ ++ + ++ E+ ++ + F
Sbjct: 216 AKKIYAIDINPHAIELLKKNIK-LNKL---EHKIIPILSDVREVDVKGNRVIMNLPKF-- 269
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
K + +A +++ GG + ++
Sbjct: 270 -----AHKFIDKALDIVEEGGVIHYYTIGKDFDKAIK 301
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 25.3 bits (56), Expect = 6.5
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 106 AYRVLKPGGRFL 117
Y + GR L
Sbjct: 169 FYNLTPDDGRML 180
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B
1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Length = 209
Score = 25.1 bits (56), Expect = 6.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 79 IESDSYSAYTIAFGIRNVTRIDKAL 103
+ +D Y A + G + R+ K
Sbjct: 40 LANDGYRAIQVTTGAKKANRVTKPE 64
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E
1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 25.2 bits (56), Expect = 6.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 80 ESDSYSAYTIAFGIRNVTRIDKAL 103
++D Y A I + + +++K +
Sbjct: 40 QTDGYEAVQIGYAPKAERKVNKPM 63
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 259
Score = 25.3 bits (56), Expect = 6.9
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 80 ESDSYSAYTIAFGIRNVTRIDKAL 103
+D Y+A + + ++ K
Sbjct: 84 ATDGYNAVQVGYRRVRDRKLTKPE 107
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 25.6 bits (55), Expect = 7.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 99 IDKALSEAYRVLKPGGRFLCLE 120
+D L E + +K GGR + +
Sbjct: 267 VDHQLKERFANMKEGGRIVSSK 288
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E
2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E
2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 25.2 bits (56), Expect = 7.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 80 ESDSYSAYTIAFGIRNVTRIDKAL 103
E D Y+A + F +N R+++ L
Sbjct: 40 EKDGYTAVQLGFLPQNPKRVNRPL 63
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 25.2 bits (56), Expect = 7.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 106 AYRVLKPGGRFL 117
A+R+L G L
Sbjct: 154 AHRLLPADGVML 165
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 25.3 bits (56), Expect = 7.9
Identities = 2/12 (16%), Positives = 5/12 (41%)
Query: 106 AYRVLKPGGRFL 117
+ ++ GR
Sbjct: 180 CFNIMPADGRMT 191
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 25.0 bits (54), Expect = 8.6
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V +I + + + +L+ + IE ++ I +
Sbjct: 120 RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-----GIEEENVDHV-----ILD 169
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLE 120
+ + ++ + A + LKPGG F+
Sbjct: 170 LPQPERVVEHAAKALKPGGFFVAYT 194
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 24.8 bits (55), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 102 ALSEAYRVLKPGGRFLC 118
LS +L+PGG FLC
Sbjct: 127 LLSVTPDILQPGGTFLC 143
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 24.9 bits (55), Expect = 9.8
Identities = 2/17 (11%), Positives = 6/17 (35%)
Query: 102 ALSEAYRVLKPGGRFLC 118
+ + GG ++
Sbjct: 136 ITHFMEQYINIGGTYIV 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.431
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,080,917
Number of extensions: 116839
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 125
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)