RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy890
         (131 letters)



>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 328

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 5/95 (5%)

Query: 31  EHCAPHVTVADINRAMLDVGEQRARDLFKV----PVPNPRLRFLEANAEELPIESDSYSA 86
                H    +         E   R+  K        +        +           + 
Sbjct: 172 ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT 231

Query: 87  YTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
             I          +D  L E +  +K GGR +  +
Sbjct: 232 SVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 7/97 (7%)

Query: 31  EHCAPHVTVADINRAMLDVGEQRARDL-----FKVPVPNPRLRFLEANAEELPIESDSYS 85
           E         +I     D+   +  +L           N     L+ +  +    ++   
Sbjct: 237 ECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP 296

Query: 86  AYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
              +           ++K + +  +  K G + + L+
Sbjct: 297 QCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333


>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 234

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 84  YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
           +   T  +   + + + KA+ E  RVLK  GRFL ++     + +L  
Sbjct: 83  FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130


>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 280

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 8/94 (8%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 36  HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA----NAEELPIESDSYSAYTIAF 91
           +  V + +   +   ++    +  +           +    +      E   +    +  
Sbjct: 72  NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ 131

Query: 92  GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125
            +  V  I   L   + +L    + L +  S  +
Sbjct: 132 MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165


>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
           cereus [TaxId: 1396]}
          Length = 281

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 82  DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
           D Y        + ++T  +  L +    +K GG+ +C E
Sbjct: 93  DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131


>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 264

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 36  HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
            V   +      +   +     +  P  N   R + ++  +  +   S     +     +
Sbjct: 123 QVISYEQRADHAEHARRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVL-----D 175

Query: 96  VTRIDKALSEAYRVLKPGGRFLC 118
           +    + L    R+L  GG  + 
Sbjct: 176 MLAPWEVLDAVSRLLVAGGVLMV 198


>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 224

 Score = 36.4 bits (83), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 32  HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
            C   V   D  + ++D      R      + + R++ +  +      E   Y A  +  
Sbjct: 99  GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGA 158

Query: 92  GIRNVTRIDKALSEAYRVLKPGGRFLC 118
               V +           LKPGGR + 
Sbjct: 159 AAPVVPQ------ALIDQLKPGGRLIL 179


>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 231

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 34  APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
              V   D+   +L V            V   +        E++P   + +   T     
Sbjct: 37  VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-----EQMPFTDERFHIVTCRIAA 91

Query: 94  RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
            +       +SEAYRVLK GG+ L ++ S   N     
Sbjct: 92  HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 129


>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 35.8 bits (81), Expect = 6e-04
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 29  LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN-PRLRFLEANAEELPIESDSYSAY 87
           + E       + + N  +       A       +P       +     +   +   Y  Y
Sbjct: 71  VQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130

Query: 88  TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
            ++    +  + +   + A+R+LKPGG       + 
Sbjct: 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 166


>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 266

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 12/94 (12%)

Query: 29  LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
           L+        V   +       + E        +     ++R +           + +  
Sbjct: 121 LARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS----------EGFDE 170

Query: 87  YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
             +     +V      + + +  LK GGRF  + 
Sbjct: 171 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC 204


>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein  FLJ20628 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 29  LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPN------PRLRFLEANAEELPIE 80
           LS+       V   ++ +   D+ ++  +        +        + F+  +      +
Sbjct: 116 LSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175

Query: 81  SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
             S +   +A  + N       L   Y  LK GG    
Sbjct: 176 IKSLTFDAVALDMLNP---HVTLPVFYPHLKHGGVCAV 210


>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 192

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 83  SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
             S Y +    R +  + + L +A  +L PGGR + + F  + + +++ 
Sbjct: 104 GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKE 152


>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 292

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 94  RNVTRIDKALSEAYRVLKPGGRFLC 118
            + +    AL     +++PGG  + 
Sbjct: 148 GDQSEHRLALKNIASMVRPGGLLVI 172


>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 198

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 88  TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
           T+         I   ++   R  KPGG  L +    
Sbjct: 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137


>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
           [TaxId: 562]}
          Length = 245

 Score = 33.4 bits (75), Expect = 0.005
 Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 5/95 (5%)

Query: 29  LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
            +       T  D++       ++RA +L      +              + ++      
Sbjct: 51  WARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----VANEKCDVAA 105

Query: 89  IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
                        A     + LKPGG  L  E   
Sbjct: 106 CVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW 140


>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 250

 Score = 32.3 bits (73), Expect = 0.011
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 29  LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
           +         +TV + +   L    ++A D          +R   ++  +   +      
Sbjct: 103 ILYALNGKGTLTVVERDEDNL----KKAMDNLSEFYDIGNVRTSRSDIADFISD------ 152

Query: 87  YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
                 I ++      + +   ++KPG     
Sbjct: 153 QMYDAVIADIPDPWNHVQKIASMMKPGSVATF 184


>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389
           {Thermotoga maritima [TaxId: 2336]}
          Length = 246

 Score = 31.7 bits (70), Expect = 0.018
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 84  YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
            +   +   +  V   DKA SE  RVL P G  + 
Sbjct: 104 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138


>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 251

 Score = 31.2 bits (69), Expect = 0.024
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 82  DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117
           D+ + +       +   + K  S+    LKPGG F+
Sbjct: 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142


>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 226

 Score = 30.5 bits (67), Expect = 0.038
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 77  LPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
           L  E  ++        I +   ++  +   E  RVLKP G+F+ + F+ +   + + 
Sbjct: 96  LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI-MYFTDLRELLPRL 151


>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
           O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
          Length = 213

 Score = 30.3 bits (67), Expect = 0.054
 Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 6/47 (12%)

Query: 72  ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
            +      E   Y    +  G+  V          +  LK GGR + 
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIV 173


>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
           N-methyltransferase, PNMTase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 263

 Score = 29.4 bits (65), Expect = 0.11
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 32  HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
             + H  + +         E++ R   K  +P    +                 A   AF
Sbjct: 108 MYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQ--PQPLGAGSPAPLPADALVSAF 165

Query: 92  GI----RNVTRIDKALSEAYRVLKPGGRFLCLE 120
            +     ++    +AL     +L+PGG  L + 
Sbjct: 166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198


>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 246

 Score = 27.3 bits (59), Expect = 0.55
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 84  YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
                    I +   + K        LK GG F+ 
Sbjct: 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
           coli [TaxId: 562]}
          Length = 268

 Score = 27.2 bits (59), Expect = 0.61
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 73  NAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
           ++  LP    S  A    +             E  RV+KPGG  + 
Sbjct: 137 SSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVIT 175


>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
           INMT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 257

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 12  DIAFRFLNYVDK----LPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL 67
           D   R    ++K     P               + N    +  E++ R   K  +     
Sbjct: 81  DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKC--- 137

Query: 68  RFLEANAEELPIESDSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSH 123
             +       P              +            AL     +LKPGG  +      
Sbjct: 138 -DVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196

Query: 124 VNNSMLQW 131
           + + M+  
Sbjct: 197 LPSYMVGK 204


>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
           methyltransferase {Red algae (Galdieria sulphuraria)
           [TaxId: 130081]}
          Length = 282

 Score = 26.3 bits (56), Expect = 1.4
 Identities = 9/43 (20%), Positives = 12/43 (27%)

Query: 84  YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
           Y          +     K   E  RVLKP G     +    + 
Sbjct: 136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDG 178


>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 25.6 bits (55), Expect = 1.9
 Identities = 6/23 (26%), Positives = 6/23 (26%)

Query: 99  IDKALSEAYRVLKPGGRFLCLEF 121
                      L PGGR L    
Sbjct: 197 HAALAPRYREALVPGGRALLTGI 219


>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 182

 Score = 24.3 bits (52), Expect = 4.6
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 84  YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
            S++ +      +  + + L +A  VL PGGR + + F  + + +++ 
Sbjct: 95  VSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR 142


>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
           {Haemophilus influenzae [TaxId: 727]}
          Length = 225

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 6/41 (14%), Positives = 12/41 (29%)

Query: 91  FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
                       L++ Y  L P G  +  E     ++ +  
Sbjct: 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 158


>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
           and C-terminal domains {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 324

 Score = 24.5 bits (52), Expect = 5.6
 Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 9/104 (8%)

Query: 29  LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
            +   A  V   D +   ++  ++ A+           +       E+L  + + +    
Sbjct: 163 AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222

Query: 89  IAFGIRNVTRIDKA---------LSEAYRVLKPGGRFLCLEFSH 123
           +          D                 ++K GG  +    S 
Sbjct: 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266


>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 24.2 bits (51), Expect = 7.1
 Identities = 9/112 (8%), Positives = 23/112 (20%), Gaps = 15/112 (13%)

Query: 32  HCAPHVTVADINRAMLDVGEQRARDLFKV------------PVPNPRLRFLEANAEELPI 79
                V   +I+   +          +                 +  +     +  +LP 
Sbjct: 65  DRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124

Query: 80  ESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
            +           A    N           + +L    ++L    S+     
Sbjct: 125 TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH 176


>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
           {Escherichia coli [TaxId: 562]}
          Length = 207

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 94  RNVTRIDKALSEAYRVLKPGGRFLCL 119
           R    ++  +S  + +    GRF  L
Sbjct: 139 RAFASLNDMVSWCHHLPGEQGRFYAL 164


>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 413

 Score = 23.9 bits (51), Expect = 9.2
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 93  IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
           I N  RI  A+      L  G + + L  SH+
Sbjct: 30  ITNNARIKAAVPSIKFCLDDGAKSVVL-MSHL 60


>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 415

 Score = 23.6 bits (50), Expect = 10.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 93  IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
           I N  RI  AL    +VL  GG  + +  SH+
Sbjct: 30  ITNDYRIRSALPTLKKVLTEGGSCVLM--SHL 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,182
Number of extensions: 21874
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 37
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)