Query psy8906
Match_columns 180
No_of_seqs 127 out of 530
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 22:31:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00784 MyTH4: MyTH4 domain; 100.0 4.8E-36 1E-40 222.3 2.8 103 1-106 10-114 (114)
2 smart00139 MyTH4 Domain in Myo 100.0 3.1E-33 6.6E-38 215.4 7.8 93 1-106 52-144 (144)
3 KOG0248|consensus 99.7 2.6E-17 5.6E-22 149.9 8.7 106 7-130 535-646 (936)
4 smart00295 B41 Band 4.1 homolo 98.7 5.7E-08 1.2E-12 77.1 7.9 55 109-164 2-56 (207)
5 PF09379 FERM_N: FERM N-termin 98.7 6.2E-08 1.3E-12 66.6 6.5 51 115-166 1-52 (80)
6 cd01787 GRB7_RA RA (RAS-associ 98.4 1.5E-06 3.3E-11 61.1 7.1 52 110-162 2-53 (85)
7 PF00788 RA: Ras association ( 98.3 7.1E-06 1.5E-10 57.3 8.7 63 111-173 3-69 (93)
8 cd01768 RA RA (Ras-associating 98.2 1.2E-05 2.5E-10 56.2 8.3 52 113-164 2-56 (87)
9 cd01778 RASSF1_RA Ubiquitin-li 98.2 9.3E-06 2E-10 58.3 7.0 48 112-159 8-55 (96)
10 smart00314 RA Ras association 98.1 1.6E-05 3.5E-10 55.9 8.1 50 111-160 3-55 (90)
11 cd01777 SNX27_RA Ubiquitin dom 98.1 7.4E-06 1.6E-10 57.8 5.9 54 110-163 1-55 (87)
12 cd01784 rasfadin_RA Ubiquitin- 98.0 2.2E-05 4.9E-10 55.2 6.1 51 113-163 4-55 (87)
13 cd01760 RBD Ubiquitin-like dom 97.6 0.0002 4.3E-09 49.0 6.1 48 113-162 2-49 (72)
14 KOG4239|consensus 97.6 0.00016 3.5E-09 61.8 6.0 72 93-165 180-258 (348)
15 cd01785 PDZ_GEF_RA Ubiquitin-l 97.1 0.0024 5.3E-08 44.2 6.8 53 112-164 4-57 (85)
16 cd01817 RGS12_RBD Ubiquitin do 97.1 0.0018 4E-08 44.3 5.9 47 113-161 2-48 (73)
17 smart00455 RBD Raf-like Ras-bi 97.0 0.0022 4.7E-08 43.5 5.7 44 113-158 2-45 (70)
18 PF02196 RBD: Raf-like Ras-bin 96.9 0.0045 9.7E-08 42.0 6.2 46 112-159 2-47 (71)
19 cd01776 Rin1_RA Ubiquitin doma 96.8 0.0038 8.3E-08 43.6 5.5 54 118-172 11-64 (87)
20 cd01782 AF6_RA_repeat1 Ubiquit 96.8 0.0098 2.1E-07 43.6 7.8 50 113-163 24-81 (112)
21 PF14847 Ras_bdg_2: Ras-bindin 96.1 0.017 3.7E-07 42.2 5.8 48 113-160 3-50 (105)
22 cd01775 CYR1_RA Ubiquitin doma 96.1 0.05 1.1E-06 39.2 7.9 64 110-174 2-65 (97)
23 cd01783 DAGK_delta_RA Ubiquiti 95.9 0.039 8.4E-07 39.8 6.7 47 118-164 14-61 (97)
24 cd01818 TIAM1_RBD Ubiquitin do 95.8 0.018 4E-07 39.6 4.4 42 114-157 3-44 (77)
25 KOG3784|consensus 95.8 0.059 1.3E-06 47.7 8.4 51 111-161 108-159 (407)
26 cd01779 Myosin_IXb_RA ubitquit 95.4 0.07 1.5E-06 38.3 6.1 55 122-177 26-80 (105)
27 PF11543 UN_NPL4: Nuclear pore 95.3 0.029 6.2E-07 39.0 4.0 50 109-161 3-52 (80)
28 cd00196 UBQ Ubiquitin-like pro 95.3 0.051 1.1E-06 32.8 4.8 42 115-158 2-43 (69)
29 PF11470 TUG-UBL1: GLUT4 regul 95.2 0.043 9.3E-07 36.7 4.4 39 116-156 2-40 (65)
30 cd01807 GDX_N ubiquitin-like d 94.2 0.16 3.5E-06 34.1 5.5 45 111-157 1-45 (74)
31 KOG3751|consensus 94.2 0.1 2.2E-06 48.0 5.6 52 109-161 187-238 (622)
32 cd01781 AF6_RA_repeat2 Ubiquit 93.7 0.25 5.5E-06 35.8 5.9 44 118-161 13-57 (100)
33 cd01816 Raf_RBD Ubiquitin doma 93.4 0.33 7.2E-06 33.2 5.7 45 113-159 2-46 (74)
34 KOG2378|consensus 93.1 0.28 6E-06 44.5 6.3 53 110-165 235-287 (573)
35 smart00666 PB1 PB1 domain. Pho 92.6 1 2.2E-05 30.4 7.5 52 111-165 2-53 (81)
36 cd01806 Nedd8 Nebb8-like ubiq 92.0 0.67 1.5E-05 30.6 5.9 44 111-156 1-44 (76)
37 PTZ00044 ubiquitin; Provisiona 92.0 0.5 1.1E-05 31.5 5.2 44 111-156 1-44 (76)
38 cd01809 Scythe_N Ubiquitin-lik 91.2 0.71 1.5E-05 30.2 5.3 45 111-157 1-45 (72)
39 cd01804 midnolin_N Ubiquitin-l 91.2 0.7 1.5E-05 31.5 5.3 39 110-148 1-39 (78)
40 cd01803 Ubiquitin Ubiquitin. U 91.2 0.66 1.4E-05 30.7 5.1 44 111-156 1-44 (76)
41 cd01794 DC_UbP_C dendritic cel 91.1 0.54 1.2E-05 31.5 4.6 42 114-157 2-43 (70)
42 PF00789 UBX: UBX domain; Int 91.0 1 2.2E-05 30.6 6.0 49 109-158 5-53 (82)
43 cd01805 RAD23_N Ubiquitin-like 90.9 0.73 1.6E-05 30.8 5.1 46 111-156 1-46 (77)
44 smart00213 UBQ Ubiquitin homol 90.7 0.81 1.8E-05 28.9 5.0 43 111-156 1-43 (64)
45 cd06407 PB1_NLP A PB1 domain i 90.0 2.6 5.6E-05 29.3 7.4 52 112-165 2-53 (82)
46 cd01796 DDI1_N DNA damage indu 89.9 0.92 2E-05 30.2 4.9 41 114-156 2-43 (71)
47 PF00794 PI3K_rbd: PI3-kinase 89.8 0.82 1.8E-05 32.9 5.0 76 100-178 6-86 (106)
48 PF11976 Rad60-SLD: Ubiquitin- 89.5 1.4 3.1E-05 28.9 5.6 46 111-157 1-46 (72)
49 cd01763 Sumo Small ubiquitin-r 89.2 1.2 2.6E-05 31.0 5.2 47 109-157 10-56 (87)
50 cd01792 ISG15_repeat1 ISG15 ub 88.8 1.3 2.8E-05 30.1 5.1 43 111-155 3-45 (80)
51 smart00166 UBX Domain present 88.8 2.2 4.8E-05 29.0 6.3 47 110-158 4-50 (80)
52 cd01798 parkin_N amino-termina 88.7 1.1 2.5E-05 29.5 4.7 40 115-156 3-42 (70)
53 cd01810 ISG15_repeat2 ISG15 ub 88.1 1.5 3.2E-05 29.3 5.0 42 114-157 2-43 (74)
54 cd01802 AN1_N ubiquitin-like d 88.1 2.2 4.7E-05 30.9 6.1 46 109-156 26-71 (103)
55 KOG3529|consensus 87.9 0.25 5.4E-06 46.3 1.3 62 109-172 12-73 (596)
56 KOG3552|consensus 87.9 0.085 1.8E-06 51.4 -1.8 66 87-157 164-229 (1298)
57 cd06409 PB1_MUG70 The MUG70 pr 87.4 3.6 7.8E-05 29.0 6.7 52 114-165 4-56 (86)
58 PF02824 TGS: TGS domain; Int 87.2 0.74 1.6E-05 29.9 2.9 32 113-146 1-32 (60)
59 cd01767 UBX UBX (ubiquitin reg 85.9 3.8 8.2E-05 27.5 6.1 45 111-158 3-47 (77)
60 cd01770 p47_UBX p47-like ubiqu 85.8 4.3 9.4E-05 27.8 6.4 46 111-157 5-50 (79)
61 KOG3530|consensus 85.8 1.5 3.2E-05 41.0 5.0 58 108-166 8-65 (616)
62 PF00240 ubiquitin: Ubiquitin 85.6 1.5 3.3E-05 28.4 3.9 38 117-156 2-39 (69)
63 PF00564 PB1: PB1 domain; Int 83.6 7.7 0.00017 26.0 6.9 53 111-165 2-54 (84)
64 cd01772 SAKS1_UBX SAKS1-like U 83.5 5.1 0.00011 27.3 5.9 45 111-158 5-49 (79)
65 cd01812 BAG1_N Ubiquitin-like 83.1 3.6 7.7E-05 26.8 4.8 43 112-157 2-44 (71)
66 cd06406 PB1_P67 A PB1 domain i 82.5 6.4 0.00014 27.4 6.0 60 110-173 2-61 (80)
67 PF13881 Rad60-SLD_2: Ubiquiti 82.2 3.3 7.2E-05 30.4 4.8 35 110-144 2-37 (111)
68 cd01790 Herp_N Homocysteine-re 81.9 4.2 9.1E-05 28.1 4.9 36 110-145 1-38 (79)
69 cd01793 Fubi Fubi ubiquitin-li 81.6 4.6 0.0001 26.8 5.0 40 115-156 3-42 (74)
70 cd01774 Faf1_like2_UBX Faf1 ik 81.4 7 0.00015 27.2 6.0 46 109-157 3-48 (85)
71 cd01769 UBL Ubiquitin-like dom 80.5 4.4 9.4E-05 25.7 4.5 39 115-155 2-40 (69)
72 cd01791 Ubl5 UBL5 ubiquitin-li 80.5 5.9 0.00013 26.7 5.2 38 111-148 2-39 (73)
73 KOG3542|consensus 79.6 1.9 4.1E-05 41.3 3.3 47 113-159 761-807 (1283)
74 cd01808 hPLIC_N Ubiquitin-like 79.5 5.6 0.00012 26.2 4.8 41 113-156 3-43 (71)
75 cd05992 PB1 The PB1 domain is 77.7 18 0.00038 24.0 7.4 51 112-165 2-53 (81)
76 cd06408 PB1_NoxR The PB1 domai 77.7 17 0.00036 25.6 6.9 46 110-159 2-47 (86)
77 KOG4229|consensus 75.0 1 2.2E-05 44.9 0.2 131 4-136 136-290 (1062)
78 cd01797 NIRF_N amino-terminal 74.4 8.9 0.00019 26.0 4.8 45 111-157 1-47 (78)
79 cd01800 SF3a120_C Ubiquitin-li 73.9 6.4 0.00014 26.4 4.0 37 118-156 5-41 (76)
80 cd01773 Faf1_like1_UBX Faf1 ik 73.9 20 0.00043 24.9 6.5 47 109-158 4-50 (82)
81 cd06404 PB1_aPKC PB1 domain is 73.2 27 0.00058 24.5 6.9 51 113-165 3-53 (83)
82 cd01771 Faf1_UBX Faf1 UBX doma 72.4 18 0.00038 24.9 5.9 46 110-158 4-49 (80)
83 PF13019 Telomere_Sde2: Telome 71.3 14 0.00031 29.0 5.8 46 112-158 2-51 (162)
84 PF08817 YukD: WXG100 protein 70.3 11 0.00024 25.4 4.6 45 112-156 4-52 (79)
85 smart00144 PI3K_rbd PI3-kinase 70.3 33 0.00072 24.7 7.3 51 109-159 16-72 (108)
86 cd01799 Hoil1_N Ubiquitin-like 68.7 10 0.00022 25.6 4.0 38 117-156 9-46 (75)
87 cd01813 UBP_N UBP ubiquitin pr 68.6 9.9 0.00021 25.5 3.9 35 113-148 3-37 (74)
88 cd01780 PLC_epsilon_RA Ubiquit 68.1 21 0.00046 25.5 5.6 44 117-160 9-53 (93)
89 PF04921 XAP5: XAP5, circadian 67.0 29 0.00064 29.0 7.1 71 102-179 90-168 (239)
90 cd00153 RalGDS_RA Ubiquitin do 64.5 47 0.001 23.4 7.1 42 121-162 17-59 (87)
91 PF14904 FAM86: Family of unkn 64.5 15 0.00033 26.6 4.4 42 9-66 41-82 (100)
92 KOG1117|consensus 64.4 25 0.00054 34.8 6.9 53 111-163 927-983 (1186)
93 PF08825 E2_bind: E2 binding d 62.6 11 0.00025 26.2 3.4 34 125-158 1-39 (84)
94 PF05422 SIN1: Stress-activate 61.0 2.7 6E-05 38.9 0.0 65 110-174 205-280 (523)
95 cd06398 PB1_Joka2 The PB1 doma 60.5 57 0.0012 23.0 7.5 51 113-165 3-58 (91)
96 TIGR00601 rad23 UV excision re 56.8 23 0.0005 31.5 5.1 45 111-157 1-48 (378)
97 PF06453 LT-IIB: Type II heat- 56.7 12 0.00027 27.3 2.8 25 150-174 55-79 (122)
98 TIGR02281 clan_AA_DTGA clan AA 55.3 45 0.00097 24.4 5.7 56 109-165 10-65 (121)
99 KOG0005|consensus 54.1 35 0.00075 22.6 4.3 39 111-149 1-39 (70)
100 KOG1574|consensus 52.9 35 0.00075 30.3 5.4 46 110-158 5-50 (375)
101 KOG4229|consensus 52.8 9.3 0.0002 38.4 2.1 75 80-157 580-654 (1062)
102 cd01786 STE50_RA Ubiquitin-lik 52.8 38 0.00082 24.3 4.6 44 122-165 26-70 (98)
103 KOG1892|consensus 50.6 33 0.00071 34.6 5.3 50 113-163 43-100 (1629)
104 KOG0792|consensus 50.0 25 0.00054 35.3 4.5 45 109-154 21-65 (1144)
105 PF14533 USP7_C2: Ubiquitin-sp 49.9 1.2E+02 0.0026 24.5 7.9 53 122-176 35-88 (213)
106 KOG3527|consensus 47.9 23 0.00049 34.9 3.8 52 109-161 30-81 (975)
107 KOG4261|consensus 47.1 16 0.00034 35.6 2.6 44 113-157 87-130 (1003)
108 cd01668 TGS_RelA_SpoT TGS_RelA 46.4 29 0.00063 21.3 3.1 25 114-140 2-26 (60)
109 cd06410 PB1_UP2 Uncharacterize 45.2 76 0.0016 22.6 5.4 40 115-157 17-56 (97)
110 cd06396 PB1_NBR1 The PB1 domai 43.3 1.1E+02 0.0024 21.2 6.0 41 118-162 7-49 (81)
111 KOG3531|consensus 42.9 68 0.0015 31.8 6.1 57 108-165 37-93 (1036)
112 cd01814 NTGP5 Ubiquitin-like N 41.2 30 0.00064 25.7 2.7 37 109-145 3-40 (113)
113 PLN02560 enoyl-CoA reductase 39.6 55 0.0012 28.3 4.6 35 112-146 2-39 (308)
114 cd01201 Neurobeachin Neurobeac 39.3 50 0.0011 24.3 3.7 41 99-139 60-104 (108)
115 PF10264 Stork_head: Winged he 39.1 1.3E+02 0.0028 20.9 5.5 52 13-65 14-65 (80)
116 cd02639 R3H_RRM R3H domain of 38.9 92 0.002 20.3 4.6 31 119-149 14-46 (60)
117 cd00390 Urease_gamma Urease ga 38.0 1.2E+02 0.0025 21.9 5.3 30 92-127 63-92 (96)
118 PRK13241 ureA urease subunit g 37.6 1.2E+02 0.0026 22.0 5.3 30 93-128 67-96 (100)
119 KOG4261|consensus 34.6 97 0.0021 30.5 5.7 63 112-175 5-71 (1003)
120 PTZ00380 microtubule-associate 34.6 1.7E+02 0.0038 21.8 6.0 30 126-157 46-75 (121)
121 cd01611 GABARAP Ubiquitin doma 33.5 1.9E+02 0.0041 21.1 7.0 37 122-161 42-78 (112)
122 TIGR00193 urease_gam urease, g 33.3 1.5E+02 0.0033 21.5 5.3 30 93-128 67-96 (102)
123 PF12348 CLASP_N: CLASP N term 33.2 1.4E+02 0.003 23.6 5.8 75 12-88 129-208 (228)
124 PF08008 Viral_cys_rich: Viral 32.5 15 0.00032 25.9 0.0 24 13-38 56-79 (85)
125 cd06007 R3H_DEXH_helicase R3H 31.2 57 0.0012 21.1 2.6 27 122-148 16-44 (59)
126 PLN02799 Molybdopterin synthas 30.8 1.1E+02 0.0023 20.5 4.1 24 121-144 19-42 (82)
127 KOG4631|consensus 30.4 22 0.00047 25.4 0.6 16 2-17 34-49 (100)
128 cd02640 R3H_NRF R3H domain of 30.2 53 0.0011 21.3 2.3 28 121-148 16-45 (60)
129 PF14560 Ubiquitin_2: Ubiquiti 29.9 1.8E+02 0.0039 19.6 8.4 55 112-168 3-60 (87)
130 PF00530 SRCR: Scavenger recep 28.6 86 0.0019 21.1 3.4 34 112-147 10-43 (99)
131 PRK13242 ureA urease subunit g 28.4 2.3E+02 0.005 20.5 5.7 30 93-128 67-96 (100)
132 PF14039 YusW: YusW-like prote 28.4 1.1E+02 0.0024 21.6 4.0 32 124-155 55-86 (92)
133 KOG3739|consensus 27.9 1.2E+02 0.0026 28.8 4.9 64 110-173 265-341 (634)
134 PF15599 Imm38: Immunity prote 27.2 92 0.002 23.0 3.5 41 133-175 3-46 (124)
135 PF14782 BBS2_C: Ciliary BBSom 27.0 92 0.002 28.3 4.1 43 104-148 253-295 (431)
136 cd02641 R3H_Smubp-2_like R3H d 26.1 57 0.0012 21.0 2.0 27 123-149 18-46 (60)
137 COG3492 Uncharacterized protei 25.6 87 0.0019 22.4 2.9 32 56-87 20-51 (104)
138 PF09715 Plasmod_dom_1: Plasmo 25.2 2.2E+02 0.0047 19.1 4.6 49 11-60 13-62 (67)
139 PF08465 Herpes_TK_C: Thymidin 25.1 53 0.0012 19.0 1.4 14 7-20 6-19 (33)
140 cd01795 USP48_C USP ubiquitin- 25.0 1E+02 0.0022 22.5 3.2 28 122-149 16-43 (107)
141 PF14732 UAE_UbL: Ubiquitin/SU 24.5 47 0.001 23.1 1.4 36 130-172 8-44 (87)
142 PF08783 DWNN: DWNN domain; I 24.4 2.3E+02 0.0051 19.2 5.6 45 122-167 11-56 (74)
143 KOG2689|consensus 24.4 1.5E+02 0.0032 25.5 4.6 38 111-148 211-248 (290)
144 PF02991 Atg8: Autophagy prote 23.2 2.9E+02 0.0064 19.9 6.0 59 100-161 4-70 (104)
145 COG3577 Predicted aspartyl pro 23.1 97 0.0021 25.5 3.1 49 117-165 111-159 (215)
146 cd00754 MoaD Ubiquitin domain 23.1 1.4E+02 0.003 19.4 3.5 25 121-145 16-40 (80)
147 KOG0010|consensus 22.7 1.2E+02 0.0026 28.0 4.0 38 109-147 14-51 (493)
148 PF12436 USP7_ICP0_bdg: ICP0-b 22.4 1.1E+02 0.0024 25.3 3.5 48 113-161 73-124 (249)
149 PF14804 Jag_N: Jag N-terminus 22.2 1.1E+02 0.0024 19.2 2.7 19 130-148 4-22 (52)
150 cd03035 ArsC_Yffb Arsenate Red 22.1 34 0.00073 24.5 0.3 14 94-107 33-46 (105)
151 PF13793 Pribosyltran_N: N-ter 22.0 2.9E+02 0.0063 20.1 5.3 42 126-170 2-43 (116)
152 KOG4257|consensus 21.3 23 0.0005 34.2 -0.9 45 113-159 5-49 (974)
153 PF13778 DUF4174: Domain of un 21.1 3.3E+02 0.0072 19.7 5.8 35 130-166 59-93 (118)
154 TIGR01687 moaD_arch MoaD famil 21.1 1.4E+02 0.0031 20.0 3.3 24 121-145 16-39 (88)
No 1
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=100.00 E-value=4.8e-36 Score=222.30 Aligned_cols=103 Identities=37% Similarity=0.639 Sum_probs=82.2
Q ss_pred CcccccCCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhccCC--CCCchHHHHH
Q psy8906 1 MERAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCSSD--CVSEEGKYAR 78 (180)
Q Consensus 1 l~~~l~~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~~~--~~~~~~~~a~ 78 (180)
|+.|+++|+||||||||||||||+||+++| +.|||+||++|+++|+||. .|.+||..|+++++.+ .+++.+++|.
T Consensus 10 l~~~l~~~~LrDEiy~QliKQtt~np~~~s--~~r~W~Ll~~~~~~f~PS~-~l~~yL~~fl~~~~~~~~~~~~~~~~a~ 86 (114)
T PF00784_consen 10 LQKGLENPELRDEIYCQLIKQTTNNPSPDS--CIRGWQLLALCCSCFPPSK-DLLPYLRNFLNRHADSQESDPEVGKYAQ 86 (114)
T ss_dssp HHHHHH-CCHHHHHHHHHHHHTSS-SSCHH--HHHHHHHHHHHCCC----C-CCHHHHHHHHHCCHCHHSTTSHHHCCHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHCCCchhh--HHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHHcCcccCCCchHHHHHH
Confidence 467999999999999999999999999777 5999999999999999997 6999999999999752 2455788999
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHhh
Q psy8906 79 FAEKCVLKTQGTRRRQWPPSREEILCTI 106 (180)
Q Consensus 79 ~c~~~L~r~~~~g~R~~~PS~~Ei~a~~ 106 (180)
+|+++|+++.+.|+|+++||..||+|++
T Consensus 87 ~c~~~L~~~~~~g~R~~~Ps~~Ei~a~~ 114 (114)
T PF00784_consen 87 YCLRRLKRTKKNGPRKFPPSRLEIEAIK 114 (114)
T ss_dssp HHHHHHCCHHHH---SS---HHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCcCHHHHHhhC
Confidence 9999999999999999999999999974
No 2
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=100.00 E-value=3.1e-33 Score=215.38 Aligned_cols=93 Identities=33% Similarity=0.525 Sum_probs=84.6
Q ss_pred CcccccCCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhccCCCCCchHHHHHHH
Q psy8906 1 MERAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCSSDCVSEEGKYARFA 80 (180)
Q Consensus 1 l~~~l~~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~~~~~~~~~~~a~~c 80 (180)
++.|+++++||||||||||||||+||+++| ..|||+||++|+++|+||. .|.+||..||++++.+.. .+++|.+|
T Consensus 52 ~~~~~~~~~LrDEiy~QLiKQtt~Np~~~s--~~rgW~Ll~l~~~~FpPS~-~l~~yL~~~l~~~~~~~~--~~~~a~~c 126 (144)
T smart00139 52 LQKGLAHPELRDEIYCQLIKQLTDNPSRQS--EERGWELLYLCTSLFPPSE-RLLPYLLQFLSRRADQPS--EQGLAKYC 126 (144)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHHHhHcCChH-HHHHHHHHHHHhcCCCcc--HHHHHHHH
Confidence 357999999999999999999999999988 5999999999999999986 799999999999985432 58899999
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHhh
Q psy8906 81 EKCVLKTQGTRRRQWPPSREEILCTI 106 (180)
Q Consensus 81 ~~~L~r~~~~g~R~~~PS~~Ei~a~~ 106 (180)
++ |+|+++||..||+|++
T Consensus 127 ~~--------g~R~~~Ps~~Ei~Ai~ 144 (144)
T smart00139 127 LY--------GARKQPPSRLELEAIL 144 (144)
T ss_pred Hh--------CCCCCCCCHHHHHHhC
Confidence 97 9999999999999974
No 3
>KOG0248|consensus
Probab=99.71 E-value=2.6e-17 Score=149.91 Aligned_cols=106 Identities=22% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHh
Q psy8906 7 KDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCSSDCVSEEGKYARFAEKCVLK 86 (180)
Q Consensus 7 ~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~~~~~~~~~~~a~~c~~~L~r 86 (180)
+++|--|+||||++|+..- .+||+|+++|++.|.|.. .|.+||+.+ ++.++||.||+++++|
T Consensus 535 ~~~l~~~~~cql~~~~~~r--------~Q~wQllalca~lfLp~h-~flwylr~~---------se~g~yAiyCqraveR 596 (936)
T KOG0248|consen 535 KKTLEIARACQLFVSVLMR--------AQATQYHIDLAQNILSTA-VQQEYLRNE---------SDETRMAIFCESALDR 596 (936)
T ss_pred cHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccch-HHHHHHHhc---------ccchhHHHHHHHHHHH
Confidence 5677778888888887643 799999999999999986 799999875 3478999999999999
Q ss_pred hccCCCCCCCCCHHHHHHhhcCCCee------eEEEeeCCCEEEEEeccc
Q psy8906 87 TQGTRRRQWPPSREEILCTINRRPIY------ARFYFMDGSYHAVEFHPS 130 (180)
Q Consensus 87 ~~~~g~R~~~PS~~Ei~a~~~~~~i~------~~i~~~dg~~~~v~vds~ 130 (180)
|+++|.|+..||..||.+++.|.+.+ ++|+|+||.++.|++|.+
T Consensus 597 tlr~G~RearPSRmEv~S~LlRnp~hhslPfSIpVhf~Ng~YqvVgFDgs 646 (936)
T KOG0248|consen 597 CLRVGGRQEGPSRLEVTSVLTRDVTRTKFPHSISVKLPNSEYQIVEFDGK 646 (936)
T ss_pred HHhccccccCCchheehhhhhcCcccccCCcceeeeccCCeeEEEeecch
Confidence 99999999999999999999987654 689999999999999998
No 4
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=98.71 E-value=5.7e-08 Score=77.09 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=50.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCee
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYT 164 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~ 164 (180)
.++.++|+++||+...+.++++||++|+++.+|+++||.. ..+||||+..+++..
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~-~~~F~L~~~~~~~~~ 56 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE-SEYFGLQFEDPDEDL 56 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc-cceeEEEEEcCCCCc
Confidence 5788999999999999999999999999999999999975 899999999876544
No 5
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=98.69 E-value=6.2e-08 Score=66.55 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=46.1
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE-EecCCeeEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE-VGTLGYTIY 166 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~-~~~~~~~~~ 166 (180)
|.++||+...+.||+.+|++|+++.||.++||.+ .++|||+. ..++|..+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e-~~~FgL~~~~~~~~~~~w 52 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKE-KEYFGLQYQVDKDGEHHW 52 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSS-GGGEEEEE-EBTTSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCC-ccEEEEEEeecCCCccee
Confidence 7899999999999999999999999999999996 89999999 666665554
No 6
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=98.39 E-value=1.5e-06 Score=61.11 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=47.9
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLG 162 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~ 162 (180)
...++||+.||+++++.|++.+||.||+..++.+-++.+ ..+|+||+...+-
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~-~~~W~LvE~~P~l 53 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQD-DSSWTLVEHLPHL 53 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCC-CCCeEEEEecchh
Confidence 456899999999999999999999999999999999997 7999999997664
No 7
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=98.28 E-value=7.1e-06 Score=57.34 Aligned_cols=63 Identities=27% Similarity=0.356 Sum_probs=51.5
Q ss_pred eeeEEEeeCCC----EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCccc
Q psy8906 111 IYARFYFMDGS----YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALGY 173 (180)
Q Consensus 111 i~~~i~~~dg~----~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~ 173 (180)
-.++||..+++ ++.+.|++.||++||+..+++++|+.++...|+|++....+..--.+.+..+
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 36789999999 9999999999999999999999999555899999865555555445555543
No 8
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=98.20 E-value=1.2e-05 Score=56.17 Aligned_cols=52 Identities=33% Similarity=0.458 Sum_probs=46.9
Q ss_pred eEEEeeC---CCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCee
Q psy8906 113 ARFYFMD---GSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYT 164 (180)
Q Consensus 113 ~~i~~~d---g~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~ 164 (180)
++||..| ++++.+.|++.+|+.||+..++++.|+.++.+.|+||++..++..
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~ 56 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGL 56 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceE
Confidence 5788888 999999999999999999999999999966899999999888533
No 9
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=98.16 E-value=9.3e-06 Score=58.31 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=44.0
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
...+|+|-|+...|.|.|.||+.||++.+.++..+.++++.||||+..
T Consensus 8 ~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~ 55 (96)
T cd01778 8 STSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALFERE 55 (96)
T ss_pred EEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEEE
Confidence 345888899999999999999999999999999999989999999763
No 10
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=98.15 E-value=1.6e-05 Score=55.86 Aligned_cols=50 Identities=30% Similarity=0.473 Sum_probs=45.0
Q ss_pred eeeEEEeeC---CCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 111 IYARFYFMD---GSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 111 i~~~i~~~d---g~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
-.++||..| ++++.+.|.+.||+.||+..++++.|+.+..+.|+||++..
T Consensus 3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~ 55 (90)
T smart00314 3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLP 55 (90)
T ss_pred eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeC
Confidence 356788877 99999999999999999999999999986579999999973
No 11
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=98.13 E-value=7.4e-06 Score=57.75 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=48.6
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCe
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGY 163 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~ 163 (180)
+..++|++|||+...|.+..+.++.+|.+.+++++||++. ...|+||+..+.++
T Consensus 1 ~V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~~f 55 (87)
T cd01777 1 DVELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINHSF 55 (87)
T ss_pred CeEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecceE
Confidence 3567899999999999999999999999999999999975 79999999976544
No 12
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=97.99 E-value=2.2e-05 Score=55.18 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=47.4
Q ss_pred eEEEeeC-CCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCe
Q psy8906 113 ARFYFMD-GSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGY 163 (180)
Q Consensus 113 ~~i~~~d-g~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~ 163 (180)
..||+|- |+...|.|.|.+|+.||++.+.++..+.++++.||||++..+|+
T Consensus 4 TS~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge 55 (87)
T cd01784 4 TSVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVHTSGE 55 (87)
T ss_pred ccEeCCCCCceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCCC
Confidence 3589998 99999999999999999999999999998899999999987775
No 13
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=97.63 E-value=0.0002 Score=48.98 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=44.2
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCC
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLG 162 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~ 162 (180)
++|++|||+...|.|.+.+|+.|+++.+|++.|+. ...+.||...+++
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~~~~ 49 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLGLDE 49 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEecCCC
Confidence 57999999999999999999999999999999997 5899999986654
No 14
>KOG4239|consensus
Probab=97.57 E-value=0.00016 Score=61.75 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHhhcCCCee-------eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 93 RQWPPSREEILCTINRRPIY-------ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 93 R~~~PS~~Ei~a~~~~~~i~-------~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+..|||.....- .++.++. ..||+|-.+...|.|+|.||+.||+..++++..+.++++.||||++-..|+++
T Consensus 180 g~~p~~~~d~~~-~~r~singhfynh~TSfflPa~svk~vrInStttt~eVI~~LLkKF~Ved~P~kFALy~~~~~geqv 258 (348)
T KOG4239|consen 180 GKKPPSVYDARI-RHRFSINGHFYNHRTSFFLPADSVKNVRINSTTTTREVIKLLLKKFRVEDNPQKFALYERHESGEQV 258 (348)
T ss_pred CCCCCcHHHHHH-hhcccccceeeccceeeecccccceeEEecccccHHHHHHHHHHHHeecCCHhheeeeEEeecCchh
Confidence 445666654442 4443332 25999988999999999999999999999999999999999999987666653
No 15
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=97.15 E-value=0.0024 Score=44.21 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=46.4
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCee
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG-TLGYT 164 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~-~~~~~ 164 (180)
.++||-.|.+++-+.|.-.||+.||+....++.||......|+|+++. +.|+.
T Consensus 4 VlkvykaDQt~kyili~K~Tta~evv~lal~eFgi~~~s~~~sLceVtV~~~g~ 57 (85)
T cd01785 4 VLKVYKADQTCKYLLIYKETTAHEVVMLALQEFGITAPSSNFSLCEVSVTPGGV 57 (85)
T ss_pred eEEEEecCcceeEEEEeccccHHHHHHHHHHHhCCCCCccceEEEEEEecCCce
Confidence 468999999999999999999999999999999999888999999863 44433
No 16
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=97.11 E-value=0.0018 Score=44.27 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=42.8
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
++||+|||+.-.|.+.+-.|++|++..+|++.||. .....+|...++
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~--~~~~~vf~~g~~ 48 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN--YAAVDLFLVGGD 48 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC--hhHEEEEEecCC
Confidence 68999999999999999999999999999999997 488899988443
No 17
>smart00455 RBD Raf-like Ras-binding domain.
Probab=97.03 E-value=0.0022 Score=43.49 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=41.0
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
+.|++|||+...|.+.+..|+.|+++.+|++.|+. .....||..
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~ 45 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLR 45 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEc
Confidence 57999999999999999999999999999999996 588899886
No 18
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=96.87 E-value=0.0045 Score=42.02 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=39.0
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
.+.|++|||+.-.+.+.+..|+.|+++.+|++.||. .....+|.+.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~--~~~~~V~~~~ 47 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLN--PECCDVRLVG 47 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT----CCCEEEEEEE
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 368999999999999999999999999999999997 4788888664
No 19
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=96.81 E-value=0.0038 Score=43.59 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=44.9
Q ss_pred eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCcc
Q psy8906 118 MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALG 172 (180)
Q Consensus 118 ~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~ 172 (180)
++-+.+++.|.+.+|++||+..+++++++.+ ++.||||...+.+.+--....+-
T Consensus 11 sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~q-Pe~y~LFl~vdg~~~qLadd~~P 64 (87)
T cd01776 11 SGCTGKTLLVRPYITTEDVCQLCAEKFKVTQ-PEEYSLFLFVEETWQQLAPDTYP 64 (87)
T ss_pred CCceeeeeecCCCCcHHHHHHHHHHHhccCC-hhheeEEEEECCcEEEcCccccc
Confidence 3457899999999999999999999999997 79999999887776654444443
No 20
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=96.80 E-value=0.0098 Score=43.63 Aligned_cols=50 Identities=32% Similarity=0.563 Sum_probs=41.8
Q ss_pred eEEEeeCCC----EEEEEecccCCHHHHHHHHHHHcCCC----CCCCceEEEEEecCCe
Q psy8906 113 ARFYFMDGS----YHAVEFHPSATARDAVALIRAKLGLR----DGALGYAIYEVGTLGY 163 (180)
Q Consensus 113 ~~i~~~dg~----~~~v~vds~tt~~ev~~~i~~~lgl~----~~~~gfaL~~~~~~~~ 163 (180)
.++||-|+. ++.|.|.|.+|+.||++.+.++..+. + ...||||+...+|.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s-~p~FALYevh~nGe 81 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLS-NPTYSLYEVHENGE 81 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccC-CcceEEEEEecCCc
Confidence 478888874 57899999999999999999998833 3 46999999977765
No 21
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=96.15 E-value=0.017 Score=42.24 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=37.6
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
+.|-.-||+++.|.|..++++.|+...+++++|+.+....|..|+..+
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 457778999999999999999999999999999997678999998876
No 22
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=96.13 E-value=0.05 Score=39.16 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=54.0
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCcccc
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
+..++||=.||++.++.....||++|++..+.++..+.+ ...|-|++..++-..+-++...--.
T Consensus 2 ~y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~-~~ny~l~l~~~~l~RvL~p~ErPl~ 65 (97)
T cd01775 2 SYCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS-GGNYQLSLKKHDLSRVLRPTEKPLL 65 (97)
T ss_pred ceEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC-CCCeEEEEEECCeeeecCCcCCcHH
Confidence 456899999999999999999999999999999999997 4899999988776666655544333
No 23
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=95.94 E-value=0.039 Score=39.80 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=40.0
Q ss_pred eCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCee
Q psy8906 118 MDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYT 164 (180)
Q Consensus 118 ~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~ 164 (180)
+...+..+.|+..||++|++.++..++|+.+. ++.|.|.++.-+...
T Consensus 14 ~~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv 61 (97)
T cd01783 14 VGVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGV 61 (97)
T ss_pred cCcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCe
Confidence 34567899999999999999999999999975 789999998755443
No 24
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=95.84 E-value=0.018 Score=39.59 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=36.8
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
-|.+|||....+.|.+++|+.|+.+.+|++-|+.+ ..+.|=.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp--~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDP--MEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCCh--hHheeEE
Confidence 48899999999999999999999999999999975 5555543
No 25
>KOG3784|consensus
Probab=95.76 E-value=0.059 Score=47.71 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=46.4
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTL 161 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~ 161 (180)
..+.|.+|||....|.+-.+.|+.++...+|+++|+.+. ...||||+.++.
T Consensus 108 v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~ 159 (407)
T KOG3784|consen 108 VELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDN 159 (407)
T ss_pred eEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEecc
Confidence 456799999999999999999999999999999999975 789999998766
No 26
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=95.36 E-value=0.07 Score=38.35 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=47.6
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCcccchhh
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALGYAIYE 177 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~~~~~ 177 (180)
+..|.+...+|++||++.+...|||.. ...|-|.++...|+..|-+.+.|--.-|
T Consensus 26 ~C~v~a~k~sTAa~VI~~~i~~L~Ld~-tk~YvLaEVkEsGgEEwvL~p~D~pvqR 80 (105)
T cd01779 26 SCRVTATKDSTAADVIDDVIASLQLDG-TKCYVLAEVKESGGEEWVLDPTDSPVQR 80 (105)
T ss_pred EeEeEeccCCcHHHHHHHHHHHhCcCc-cccEEEEEeeccCCeeeecCcccCceee
Confidence 678999999999999999999999986 7899999999999888877777654443
No 27
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=95.29 E-value=0.029 Score=38.96 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
..|.++|.-+||.. .|++++..|++++.+.|.+.+++.. .+|+||...+.
T Consensus 3 ~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~--~~~~L~~~~~~ 52 (80)
T PF11543_consen 3 SSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPD--SSQSLSKDRNN 52 (80)
T ss_dssp ---EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---T--TT---BSSGGG
T ss_pred ccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCC--cceEEEecCCC
Confidence 46789999999995 4589999999999999999999985 58999866443
No 28
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=95.26 E-value=0.051 Score=32.81 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=37.1
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
|+++||....+.+.+.+|++++...++++.|+. .+.|.|+..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~ 43 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVN 43 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEEC
Confidence 566799999999999999999999999999954 688999865
No 29
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.19 E-value=0.043 Score=36.71 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.0
Q ss_pred EeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 116 YFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 116 ~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
-.++++...|+|.+.++..||+++.|++.|+.+ +.|.|.
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~--~~~~L~ 40 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDP--SSYDLK 40 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--G--GG-EEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCc--cceEEE
Confidence 458999999999999999999999999999975 588885
No 30
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.22 E-value=0.16 Score=34.06 Aligned_cols=45 Identities=7% Similarity=0.151 Sum_probs=38.5
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.|..++|....++|++.+|++++-+.|+++.|+. .+...|+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~ 45 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLF 45 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEE
Confidence 3566788899999999999999999999999999996 46677763
No 31
>KOG3751|consensus
Probab=94.19 E-value=0.1 Score=47.96 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
+.++++||.-||+.+.+.||.-.||.||++.++.+--... ...|+|||...+
T Consensus 187 rklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~-d~~W~LvEh~P~ 238 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCAD-DEDWCLVEHYPH 238 (622)
T ss_pred cceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhc-ccceeeeeecch
Confidence 5788999999999999999999999999999999987775 699999998554
No 32
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=93.71 E-value=0.25 Score=35.80 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=39.9
Q ss_pred eCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecC
Q psy8906 118 MDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTL 161 (180)
Q Consensus 118 ~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~ 161 (180)
++-.+++|.|.+.+|+.+++.+.+.+.||... ++.|.|.++..+
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~ 57 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSND 57 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecc
Confidence 66678999999999999999999999999875 789999998766
No 33
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=93.40 E-value=0.33 Score=33.24 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=41.3
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
+++|+||...-.|+|-+-.|+.|++..+++..||. ++..++|...
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~--pe~C~V~~~~ 46 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQ--PECCAVFRLG 46 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC--hhHeEEEEcC
Confidence 68999999999999999999999999999999998 4888888874
No 34
>KOG2378|consensus
Probab=93.08 E-value=0.28 Score=44.50 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=46.6
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
.+.+.||+||-++.++.+..+++|+|+++.+++++|-+ .|-.|..+.+.|.++
T Consensus 235 ev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~s---eel~LV~v~s~GEkv 287 (573)
T KOG2378|consen 235 EVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYS---EELILVKVSSSGEKV 287 (573)
T ss_pred eeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccc---cceeEEEEccCCcee
Confidence 35568999999999999999999999999999999986 568888888888776
No 35
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.61 E-value=1 Score=30.37 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=43.1
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+.+++++ +|..+.+.+.+..|-+|+.+.|.+++++.. ..|.|-....+|..+
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~--~~~~l~Y~Dedgd~v 53 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN--QSFTLKYQDEDGDLV 53 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC--CCeEEEEECCCCCEE
Confidence 4567776 778999999999999999999999999863 788887776666544
No 36
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=92.01 E-value=0.67 Score=30.64 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=37.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.|+..+|++++-+.|+.+.|++. +..-|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~--~~qrL~ 44 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP--QQQRLI 44 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCCh--hhEEEE
Confidence 45678889999999999999999999999999999874 556665
No 37
>PTZ00044 ubiquitin; Provisional
Probab=92.00 E-value=0.5 Score=31.53 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=37.3
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+-|..++|....+.|++.+|++++-+.|..+.|++ ++..-|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~ 44 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLI 44 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEE
Confidence 3456778899999999999999999999999999996 3556665
No 38
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=91.23 E-value=0.71 Score=30.18 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.|..++|....+.+++..|++++-++|.+..|++ ++..-|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~ 45 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIY 45 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEE
Confidence 4567788999999999999999999999999999986 35555554
No 39
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=91.20 E-value=0.7 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=35.1
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+|.+.|....|....+++++..|++|+-+.|.++.|+..
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~ 39 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPK 39 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCCh
Confidence 467788888999999999999999999999999999864
No 40
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=91.18 E-value=0.66 Score=30.69 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=36.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.+++..|++++-+.|.++.|++. +..-|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~--~~q~L~ 44 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 44 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCH--HHeEEE
Confidence 35667888999999999999999999999999999863 445555
No 41
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=91.15 E-value=0.54 Score=31.50 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=36.3
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.|..++|....++|+++.|++|+-+.|.++-|++ +....|+.
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~ 43 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFF 43 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEE
Confidence 5788999999999999999999999999999986 35566653
No 42
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.03 E-value=1 Score=30.57 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
....++|.||||+...-.+.+..|++++.+.+...++... ...|.|+..
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~-~~~f~L~~~ 53 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPE-ESDFELITA 53 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTT-TSSEEEEES
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCC-CccEEEEeC
Confidence 3456789999999999999999999999999999988764 345888643
No 43
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=90.86 E-value=0.73 Score=30.75 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.+++.+|++++-+.|..+.|+..+.+..-|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~ 46 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI 46 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE
Confidence 4567888999999999999999999999999999983123444444
No 44
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=90.66 E-value=0.81 Score=28.87 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=35.0
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++ ....+.|++.+|++++-+.|....|+.. ....|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~--~~~~L~ 43 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPV--EQQRLI 43 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCH--HHEEEE
Confidence 356777888 6788999999999999999999999963 445554
No 45
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=90.00 E-value=2.6 Score=29.29 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=42.6
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
.+++.+ +|....+.+.+..+..|+.+.|++++++.+ ..+|+|-....+|..+
T Consensus 2 ~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~-~~~f~LkY~Ddegd~v 53 (82)
T cd06407 2 RVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDD-MSAFDLKYLDDDEEWV 53 (82)
T ss_pred EEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCC-CCeeEEEEECCCCCeE
Confidence 355554 667899999999999999999999999964 4899998887776544
No 46
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=89.93 E-value=0.92 Score=30.25 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=35.4
Q ss_pred EEEee-CCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 114 RFYFM-DGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 114 ~i~~~-dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.|..+ +|....++|+++.|++++-+.|..+-|++ .+..-|+
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li 43 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLI 43 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEE
Confidence 57788 89999999999999999999999999996 3555665
No 47
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=89.84 E-value=0.82 Score=32.88 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCeeeEEEee-CCCEEEEEecccCCHHHHHHHHHHH----cCCCCCCCceEEEEEecCCeeEEeecCcccc
Q psy8906 100 EEILCTINRRPIYARFYFM-DGSYHAVEFHPSATARDAVALIRAK----LGLRDGALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 100 ~Ei~a~~~~~~i~~~i~~~-dg~~~~v~vds~tt~~ev~~~i~~~----lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
.-+.+-.....+.+.|++. ++....+.++..+|+.+++.++.++ ++..+..+.|.|=++.- .-|=.|++..-
T Consensus 6 ~~l~~k~~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~---~EyL~g~~~L~ 82 (106)
T PF00794_consen 6 EHLKSKLQNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGR---EEYLLGDHPLS 82 (106)
T ss_dssp HHHHTTSSSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTS---SEEE-SSS-GG
T ss_pred hhHHhhCCCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCc---eEEeeCCeeee
Confidence 3455445567899999999 5568999999999999999999988 23322133787755533 34444665544
Q ss_pred hhhc
Q psy8906 175 IYEF 178 (180)
Q Consensus 175 ~~~~ 178 (180)
=|++
T Consensus 83 ~y~y 86 (106)
T PF00794_consen 83 QYEY 86 (106)
T ss_dssp GBHH
T ss_pred ccHH
Confidence 4443
No 48
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=89.47 E-value=1.4 Score=28.95 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.|...+|....+.|...++++.+.+..|++.|+.. ...+-|+.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~-~~~~~l~f 46 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP-EESIRLIF 46 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT--TTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc-cceEEEEE
Confidence 45678888999999999999999999999999999975 26666654
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.16 E-value=1.2 Score=30.95 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
..|.+.|..++|....+.|.+.+|++.|.+.++++.|+.. +...|+.
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~--~~~rf~f 56 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM--NSVRFLF 56 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc--cceEEEE
Confidence 5677889999999999999999999999999999999974 4555543
No 50
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=88.83 E-value=1.3 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=36.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAI 155 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL 155 (180)
|.+.|...+|....++|++..|++|+-++|.+..|+.. +-.-|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~--~~qrL 45 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPA--FQQRL 45 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCH--HHEEE
Confidence 56778888999999999999999999999999999863 44445
No 51
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=88.78 E-value=2.2 Score=28.97 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=38.1
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
...++|.+|||+.....+.+..|++||-+.+....+.. ...|.|+..
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~ 50 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSP 50 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeC
Confidence 45678999999999999999999999999995555443 366888654
No 52
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=88.70 E-value=1.1 Score=29.46 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=34.5
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|..++|....+++++..|++++-+.|+++.|+.. +...|+
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~--~~q~Li 42 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPP--DQLRVI 42 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCH--HHeEEE
Confidence 5677999999999999999999999999999963 555664
No 53
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=88.11 E-value=1.5 Score=29.32 Aligned_cols=42 Identities=10% Similarity=-0.038 Sum_probs=36.0
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
-|..++|....++|+++.|++++-++|...-|+. .+.+.|+.
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~ 43 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSF 43 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEE
Confidence 3567899999999999999999999999999986 46677753
No 54
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=88.07 E-value=2.2 Score=30.86 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=39.9
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|..++|....++|++..|++++-+.|..+-|+. .+...|+
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi 71 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLI 71 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEE
Confidence 357788889999999999999999999999999999986 4666665
No 55
>KOG3529|consensus
Probab=87.89 E-value=0.25 Score=46.35 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=55.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCcc
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALG 172 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~ 172 (180)
.++.++|..+|..-. +-+++++|++|+...+|+.+||++ .-.|||-.+.+.|...|..++.+
T Consensus 12 ~~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glre-~~yfgl~~~d~~~~~~wl~~d~~ 73 (596)
T KOG3529|consen 12 KPINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLRE-SWYFGLQYTDSKGEPTWLKLDKK 73 (596)
T ss_pred CCcceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCch-hhhcccccccCCCCcchhhccch
Confidence 578899999998877 999999999999999999999997 79999988888888888777654
No 56
>KOG3552|consensus
Probab=87.86 E-value=0.085 Score=51.37 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=51.7
Q ss_pred hccCCCCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 87 TQGTRRRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 87 ~~~~g~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
++-+|.=.++||..-... =|-+++||+-||.++.+++|..||++||+..+.++|-|.- -.-|+|..
T Consensus 164 V~InG~~~~~~salgllc----mPNVLKvyLENGQTKsFkfdatTtVkDVIltl~eKLsi~~-iE~FsL~L 229 (1298)
T KOG3552|consen 164 VCINGAPLFPPSALGLLC----MPNVLKVYLENGQTKSFKFDATTTVKDVILTLLEKLSICC-IELFSLVL 229 (1298)
T ss_pred heecCcccCCccccccee----chhHHHHHHhcCccceeeecccccHHHHHHHHHHHHhhhh-HHHHHHHH
Confidence 345677777887632222 1356689999999999999999999999999999999974 67788763
No 57
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=87.38 E-value=3.6 Score=28.97 Aligned_cols=52 Identities=27% Similarity=0.331 Sum_probs=44.1
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCeeE
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYTI 165 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~~ 165 (180)
.+-=|.|..+.+.+.++....|+.+.|++++|+.+. ..+|.|-...++|..+
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~V 56 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIV 56 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEE
Confidence 344578999999999888999999999999999862 4799998888888765
No 58
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=87.16 E-value=0.74 Score=29.88 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=26.2
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCC
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGL 146 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl 146 (180)
+.|++|||.... +...+|+.|++..|-..++=
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~ 32 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAK 32 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHH
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHh
Confidence 468999999776 77888999999998877643
No 59
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.87 E-value=3.8 Score=27.54 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=37.1
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
..++|.||||+...-.+.+..|++||-+.+-....- ...|.|...
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~ 47 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTS 47 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeC
Confidence 357899999999999999999999999999776543 467888754
No 60
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.81 E-value=4.3 Score=27.81 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=37.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
..++|-+|||+...-.+.+..|++||-+.+....+-.. ...|.|..
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~-~~~f~L~t 50 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFA-ARPFTLMT 50 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCC-CCCEEEec
Confidence 45789999999999999999999999999998765432 46687754
No 61
>KOG3530|consensus
Probab=85.80 E-value=1.5 Score=40.99 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
...+.|+|.|+||+...+.+.......++.+.+|..+.|.. .+.|||=........||
T Consensus 8 k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E-~DYFGLry~D~~~~~hW 65 (616)
T KOG3530|consen 8 KKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIE-KDYFGLRYQDSSKVRHW 65 (616)
T ss_pred CcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceee-eeccceeeechhhccee
Confidence 45678999999999999999999999999999999999997 89999987777777776
No 62
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=85.59 E-value=1.5 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=32.7
Q ss_pred eeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 117 FMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 117 ~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.++|....+.|++++|+.++-+.|+.+.|++. +..-|+
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~--~~~~L~ 39 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPP--EQQRLI 39 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTG--GGEEEE
T ss_pred CCCCcEEEEEECCCCCHHHhhhhccccccccc--ccceee
Confidence 46899999999999999999999999999874 555554
No 63
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=83.65 E-value=7.7 Score=26.00 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=43.4
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+.+++++-++....+.+.+..+..++...|.+.+|+. ...|.|.....+|..+
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~D~dgD~V 54 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYKDEDGDLV 54 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEEETTSSEE
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC--CccEEEEeeCCCCCEE
Confidence 4566776666655699999999999999999999997 4889998888887554
No 64
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.53 E-value=5.1 Score=27.29 Aligned_cols=45 Identities=9% Similarity=0.151 Sum_probs=36.5
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
..++|.||||......+.+.+|.+||.+.+....+- ...|.|.-.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~ 49 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTP 49 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeC
Confidence 467899999999999999999999999999876432 256777543
No 65
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=83.06 E-value=3.6 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=34.2
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.+.|... |....+.+++..|++++-+.|...-|++. +...|+.
T Consensus 2 ~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~~ 44 (71)
T cd01812 2 RVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEP--RDQKLIF 44 (71)
T ss_pred EEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCCh--HHeEEee
Confidence 4556654 78889999999999999999999999964 5555553
No 66
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.45 E-value=6.4 Score=27.39 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=43.4
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCccc
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALGY 173 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~ 173 (180)
+..++|+|-+ ..+|.|.+....+++.+.|+++|++.. +.=.|.....+......+++.||
T Consensus 2 ~~vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~--e~i~LsYkde~s~~~v~l~d~dl 61 (80)
T cd06406 2 SYVVKVHFKY--TVAIQVARGLSYATLLQKISSKLELPA--EHITLSYKSEASGEDVILSDTNM 61 (80)
T ss_pred CeEEEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCc--hhcEEEeccCCCCCccCcChHHH
Confidence 4567888876 899999999999999999999999963 44444444333334455555554
No 67
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=82.19 E-value=3.3 Score=30.42 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=29.6
Q ss_pred CeeeEEEeeCCC-EEEEEecccCCHHHHHHHHHHHc
Q psy8906 110 PIYARFYFMDGS-YHAVEFHPSATARDAVALIRAKL 144 (180)
Q Consensus 110 ~i~~~i~~~dg~-~~~v~vds~tt~~ev~~~i~~~l 144 (180)
.+.+++.+.||. ...+.+++.+||++|-+.|...-
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~W 37 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEW 37 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSS
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHC
Confidence 567899999999 89999999999999999999753
No 68
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=81.88 E-value=4.2 Score=28.14 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=30.6
Q ss_pred CeeeEEEeeCCCEEEEEe--cccCCHHHHHHHHHHHcC
Q psy8906 110 PIYARFYFMDGSYHAVEF--HPSATARDAVALIRAKLG 145 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~v--ds~tt~~ev~~~i~~~lg 145 (180)
++.+.|..++|....+.+ ++..|++|+=+.|....+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~ 38 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP 38 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC
Confidence 567889999999855555 899999999999999875
No 69
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=81.64 E-value=4.6 Score=26.84 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.9
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|++-++....++|+++.|++|+-+.|..+-|++. +...|+
T Consensus 3 i~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~Li 42 (74)
T cd01793 3 LFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDV--EDQVLL 42 (74)
T ss_pred EEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCH--HHEEEE
Confidence 4444567889999999999999999999999863 455554
No 70
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.40 E-value=7 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
..+.+.|.||||+...-.+.+..|++++-..+-. .+- ....|.|.-
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~--~~~~f~L~t 48 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKE--TPEKFQIVT 48 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCC--CCCcEEEec
Confidence 3567889999999999999999999999999953 333 246777743
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=80.54 E-value=4.4 Score=25.72 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=32.4
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAI 155 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL 155 (180)
|...+|....+.+++.+|++++-+.|.+..|+.. +-..|
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~--~~~~l 40 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPP--EQQRL 40 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcCh--HHEEE
Confidence 4556889999999999999999999999999864 34444
No 72
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=80.47 E-value=5.9 Score=26.68 Aligned_cols=38 Identities=29% Similarity=0.205 Sum_probs=32.3
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|.-..|....+.+++..|++|+-+.|.++-|+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~ 39 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRP 39 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 34556666789999999999999999999999999874
No 73
>KOG3542|consensus
Probab=79.56 E-value=1.9 Score=41.27 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=42.6
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
++||--|..++-+.|.-.||++||+.....+.+++-..+.|+|.++.
T Consensus 761 lrvfk~DQqs~Yi~isKdTtAkeVV~~A~~EF~~Ta~sd~ySLCEvs 807 (1283)
T KOG3542|consen 761 LRVFKNDQQSKYIPISKDTTAKEVVQLALQEFNMTAGSDEYSLCEVS 807 (1283)
T ss_pred HHHhhccccceeEEEeccccHHHHHHHHHHHhccccCCCceeeEEEE
Confidence 36788888999999999999999999999999999768999999863
No 74
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=79.55 E-value=5.6 Score=26.18 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=32.8
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
+.|..++|. ..+.+++..|++++-+.|+++.|+. .+.+.|.
T Consensus 3 i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li 43 (71)
T cd01808 3 VTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLI 43 (71)
T ss_pred EEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEE
Confidence 455667886 4899999999999999999999975 4555554
No 75
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=77.72 E-value=18 Score=24.00 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=39.6
Q ss_pred eeEEEeeCCCEEEEEec-ccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 112 YARFYFMDGSYHAVEFH-PSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vd-s~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
.+++++.+ ..+.+.+. ..++..++.+.|++++++.. ..|.+.....+|..+
T Consensus 2 ~vK~~~~~-~~~~~~~~~~~~s~~~L~~~i~~~~~~~~--~~~~l~y~D~e~d~v 53 (81)
T cd05992 2 RVKVKYGG-EIRRFVVVSRSISFEDLRSKIAEKFGLDA--VSFKLKYPDEDGDLV 53 (81)
T ss_pred cEEEEecC-CCEEEEEecCCCCHHHHHHHHHHHhCCCC--CcEEEEeeCCCCCEE
Confidence 45667664 45777777 99999999999999999964 778888777776443
No 76
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.67 E-value=17 Score=25.63 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=38.2
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
.+.+++++ +|....+.|.+..+-+|+.+.|..++|+. +.|.|-...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~iKykD 47 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKIKMKD 47 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEEEEEc
Confidence 46778885 55589999999999999999999999995 578876543
No 77
>KOG4229|consensus
Probab=74.95 E-value=1 Score=44.92 Aligned_cols=131 Identities=12% Similarity=0.016 Sum_probs=76.4
Q ss_pred cccCCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHh-cccCCCchHHHHH----HHHHhhhccCCCCCc------
Q psy8906 4 AMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLAC-SVVLPAHRLVRKY----LVAHLKRCSSDCVSE------ 72 (180)
Q Consensus 4 ~l~~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~-~~f~Ps~k~l~~y----L~~fl~~~~~~~~~~------ 72 (180)
++....++++-++|.|.+...|-+....++...|++|+++. +.+.|... .... |..|-+... ..+..
T Consensus 136 d~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~-~il~a~~llEafgnA~t-~~ndnssrfgk 213 (1062)
T KOG4229|consen 136 DLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQ-LILSANPLLEAFGNAKT-PRNDNSSRFGK 213 (1062)
T ss_pred hhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhh-hhhcchHHHHHhcccCC-cccCchhhhhh
Confidence 34556677777777777777666666555899999999988 66666543 3333 333333222 11111
Q ss_pred -------------hHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHH
Q psy8906 73 -------------EGKYARFAEKCVLKTQGTRRRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDA 136 (180)
Q Consensus 73 -------------~~~~a~~c~~~L~r~~~~g~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev 136 (180)
-++...+-+++.......++|+..|--.++.+..+.+....-++.-+..++-+..+...+++|-
T Consensus 214 ~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~ 290 (1062)
T KOG4229|consen 214 YIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDG 290 (1062)
T ss_pred eEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccch
Confidence 2334445555444444556666677777777776664444445555555666666666666333
No 78
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=74.38 E-value=8.9 Score=26.03 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=35.7
Q ss_pred eeeEEEeeCCCE-EEEE-ecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSY-HAVE-FHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~-~~v~-vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.|..++|.. ..+. +++..|++++-+.|..+-|+. .+...|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~ 47 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFY 47 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEe
Confidence 456678888986 5784 899999999999999999986 35556653
No 79
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=73.93 E-value=6.4 Score=26.37 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=31.0
Q ss_pred eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 118 MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 118 ~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.+|....++|++..|++++-+.|...-|++. +..-|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~--~~q~L~ 41 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPA--GKQKLQ 41 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCH--HHEEEE
Confidence 4788899999999999999999999999863 444554
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=73.86 E-value=20 Score=24.94 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
....+.|.||||+...-.++...+.++|..-+-. .|.. ...|.|.-.
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~--~~~f~L~t~ 50 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYP--NERFELLTN 50 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCC--CCCEEEecC
Confidence 3445789999999999999999999999988877 3543 477887643
No 81
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=73.19 E-value=27 Score=24.48 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=41.8
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
++++ ++|......++.++|.+++++.+.....+.+ .+.|+++-...+|.-+
T Consensus 3 ~K~~-y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~-~q~ft~kw~DEEGDp~ 53 (83)
T cd06404 3 VKAA-YNGDIMITSIDPSISLEELCNEVRDMCRFHN-DQPFTLKWIDEEGDPC 53 (83)
T ss_pred EEEE-ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC-CCcEEEEEECCCCCce
Confidence 3444 5778899999999999999999999999976 6899999876666543
No 82
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=72.44 E-value=18 Score=24.85 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=37.3
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
-+.+.|-+|||+...-.+.+..+.++|..-+..+ |-. ...|.|.-.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~ 49 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSS 49 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecC
Confidence 3567899999999999999999999999998764 443 468888643
No 83
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=71.28 E-value=14 Score=29.01 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred eeEEEeeCC----CEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 112 YARFYFMDG----SYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 112 ~~~i~~~dg----~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
.+=|..+|| .+..+.+.+.+|+.|+...|...++.... ..+-|+..
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~-~~~~L~~~ 51 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSS-SQLYLTTN 51 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCcc-ceeEEEEe
Confidence 344677888 58999999999999999999999999853 33555544
No 84
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=70.29 E-value=11 Score=25.41 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=30.0
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CC---ceEEE
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-AL---GYAIY 156 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~---gfaL~ 156 (180)
.+.|.+.+|+...+.+....++++++..+.+.+++... .. +|.|.
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~ 52 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA 52 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE
Confidence 45566666789999999999999999999999998642 22 47765
No 85
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=70.25 E-value=33 Score=24.74 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCeeeEEEeeCC-CEEEEEecccCCHHHHHHHHHHHc----CCCCCCC-ceEEEEEe
Q psy8906 109 RPIYARFYFMDG-SYHAVEFHPSATARDAVALIRAKL----GLRDGAL-GYAIYEVG 159 (180)
Q Consensus 109 ~~i~~~i~~~dg-~~~~v~vds~tt~~ev~~~i~~~l----gl~~~~~-gfaL~~~~ 159 (180)
..+.+.|++.+. ....+.++...|+.++++.+..++ +..+..+ .|.|=++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G 72 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCG 72 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecC
Confidence 467788888764 478999999999999999999884 1111133 67776553
No 86
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=68.67 E-value=10 Score=25.61 Aligned_cols=38 Identities=8% Similarity=-0.080 Sum_probs=31.2
Q ss_pred eeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 117 FMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 117 ~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
...|....+.|+++.|++++-+.|..+-|++. +..-||
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~--~~QrL~ 46 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPP--AVQRWV 46 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCH--HHEEEE
Confidence 34577789999999999999999999999974 444554
No 87
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=68.63 E-value=9.9 Score=25.53 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.4
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.|. .+|....++|++..|++|+-+.|.+..|+..
T Consensus 3 i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~ 37 (74)
T cd01813 3 VIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLP 37 (74)
T ss_pred EEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCH
Confidence 3344 3677788999999999999999999999974
No 88
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=68.08 E-value=21 Score=25.50 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=37.3
Q ss_pred eeCCCEEEEEecccCCHHHHHHHHHHHcCCCC-CCCceEEEEEec
Q psy8906 117 FMDGSYHAVEFHPSATARDAVALIRAKLGLRD-GALGYAIYEVGT 160 (180)
Q Consensus 117 ~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~-~~~gfaL~~~~~ 160 (180)
.+|.-+..+.++..+|++|++.+...+.+=++ ....|=|.|..-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~ 53 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSDFVLVEEVC 53 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCccceEEEEEee
Confidence 67888999999999999999999999987743 378999987643
No 89
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=67.04 E-value=29 Score=28.99 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=49.7
Q ss_pred HHHhhcCCCeeeEEEeeCCCE--EEEEecccCCHHHHHHHHHHHcCCCCCCCce------EEEEEecCCeeEEeecCccc
Q psy8906 102 ILCTINRRPIYARFYFMDGSY--HAVEFHPSATARDAVALIRAKLGLRDGALGY------AIYEVGTLGYTIYEVGALGY 173 (180)
Q Consensus 102 i~a~~~~~~i~~~i~~~dg~~--~~v~vds~tt~~ev~~~i~~~lgl~~~~~gf------aL~~~~~~~~~~~~~~~~~~ 173 (180)
.+.......|.+++.+.||+. ..|.|.--.|+.+.++.+.+.+- .+ ...| .|..+.++ =+-+|.|
T Consensus 90 ~Qe~vK~eeI~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~-~~-f~el~~vsvd~LM~Vked-----lIiPHhy 162 (239)
T PF04921_consen 90 KQEAVKAEEIEIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLA-KE-FRELRRVSVDDLMYVKED-----LIIPHHY 162 (239)
T ss_pred HHHHHhCCeeEEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHH-HH-hHHHHhcCHhheeeeccc-----eeccCCc
Confidence 444445689999999999984 58999999999999998777643 11 1111 13333333 3568999
Q ss_pred chhhcc
Q psy8906 174 AIYEFI 179 (180)
Q Consensus 174 ~~~~~~ 179 (180)
..|.||
T Consensus 163 ~FY~fI 168 (239)
T PF04921_consen 163 TFYDFI 168 (239)
T ss_pred eeeeee
Confidence 999998
No 90
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=64.49 E-value=47 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=37.7
Q ss_pred CEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCC
Q psy8906 121 SYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLG 162 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~ 162 (180)
-++.|-+.|.-.+-.|+.+...+.++... ++.|.|+....++
T Consensus 17 ~YKSIlltsqDktP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp~d 59 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYELVQVLPGD 59 (87)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHhCCCcCCccceEEEEEcCCC
Confidence 38999999999999999999999999976 8999999987643
No 91
>PF14904 FAM86: Family of unknown function
Probab=64.46 E-value=15 Score=26.58 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhcc
Q psy8906 9 SLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCS 66 (180)
Q Consensus 9 ~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~ 66 (180)
..-.|+.-||+++|-++|. |--||||.+.-.-||+..|+++-
T Consensus 41 s~~sel~~~IL~~Tv~HPl----------------c~k~Pps~kY~~~FLk~lI~k~E 82 (100)
T PF14904_consen 41 SSDSELQLDILQKTVKHPL----------------CVKYPPSVKYRRCFLKELIKKHE 82 (100)
T ss_pred CCcHHHHHHHHHHHhcCcc----------------hhhCCCchhHHHHHHHHHHHHHH
Confidence 3446899999999988875 44589998877777777777765
No 92
>KOG1117|consensus
Probab=64.43 E-value=25 Score=34.79 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=43.3
Q ss_pred eeeEEEeeCC---CEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCe
Q psy8906 111 IYARFYFMDG---SYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGY 163 (180)
Q Consensus 111 i~~~i~~~dg---~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~ 163 (180)
+.+.||.--- ..+.+.|.+++|++|+..+|..+.|+... .+-|+.|+++..|.
T Consensus 927 fi~eVyveeKepd~~~~ikVs~sm~aEEltneila~r~~~~~~~d~watFEv~e~~e 983 (1186)
T KOG1117|consen 927 FIIEVYVEEKEPDCSIIIKVSPSMTAEELTNEILAIRNIIPTKGDIWATFEVIENEE 983 (1186)
T ss_pred EEEEEEEeecCCCcceeEecCccccHHHHHHHHHHhcCCCCCCCCceEEEEEccCcc
Confidence 4456776533 37899999999999999999999999864 68999999976653
No 93
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=62.57 E-value=11 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEecccCCHHHHHHHHHHH--cCCCCC---CCceEEEEE
Q psy8906 125 VEFHPSATARDAVALIRAK--LGLRDG---ALGYAIYEV 158 (180)
Q Consensus 125 v~vds~tt~~ev~~~i~~~--lgl~~~---~~gfaL~~~ 158 (180)
|+|++++|.+|+++.++++ +.++++ ..+=.||+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~ 39 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQ 39 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEES
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEe
Confidence 6799999999999999999 788764 455566653
No 94
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=61.05 E-value=2.7 Score=38.90 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred CeeeEEEeeCCCE----EEEEecccCCHHHHHHHHHHHc-------CCCCCCCceEEEEEecCCeeEEeecCcccc
Q psy8906 110 PIYARFYFMDGSY----HAVEFHPSATARDAVALIRAKL-------GLRDGALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 110 ~i~~~i~~~dg~~----~~v~vds~tt~~ev~~~i~~~l-------gl~~~~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
++.+.||+|.-.. ..|.|....||.|++.-+|=+. .|..+.+.|+|+++-.+|..=++.++||..
T Consensus 205 ~~~i~Iy~p~s~~~~kPl~v~v~~~atV~e~IGl~L~~Y~~e~~~p~L~~~v~~~~Lrm~EdDGEvD~DFP~Ldr~ 280 (523)
T PF05422_consen 205 SRKIKIYFPFSSEPEKPLKVCVRATATVEEVIGLILWQYSEEGREPPLKENVNRYCLRMVEDDGEVDDDFPPLDRN 280 (523)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEEeCCCCCCCCEEEEecCCcCHHHHHHHHHHHHHHhccCCCccCChhhEEEEEeccCCCcCCCCCCCCCC
Confidence 4556677765442 4666777889999999877643 233237899999998888877898888753
No 95
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=60.46 E-value=57 Score=22.98 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=40.4
Q ss_pred eEEEeeCCCEEEEEecc-----cCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 113 ARFYFMDGSYHAVEFHP-----SATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds-----~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+++.+ +|..+.+.+.. ..+..++.+.|.+.+++.+ ..+|.|.....+|..+
T Consensus 3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~-~~~~~l~Y~Dedgd~V 58 (91)
T cd06398 3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSP-DADLSLTYTDEDGDVV 58 (91)
T ss_pred EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCC-CCcEEEEEECCCCCEE
Confidence 45554 77788888886 5899999999999999975 5899997776666544
No 96
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.81 E-value=23 Score=31.51 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=36.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcC---CCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLG---LRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lg---l~~~~~gfaL~~ 157 (180)
|.+.|..++|....+.|+...||.++-+.|...-| +. .+..-|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy 48 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIY 48 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEE
Confidence 46778889999999999999999999999999988 54 34455543
No 97
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=56.66 E-value=12 Score=27.33 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.7
Q ss_pred CCceEEEEEecCCeeEEeecCcccc
Q psy8906 150 ALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 150 ~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
.+.=|+|++.++|.+|+=+||.+|-
T Consensus 55 ~~t~GiYv~sstG~~w~Ipgg~~YP 79 (122)
T PF06453_consen 55 KNTKGIYVVSSTGGVWFIPGGQDYP 79 (122)
T ss_dssp TTT-EEEEEETTS-EEEE---SSTT
T ss_pred CCCCcEEEEeCCCCeEEccCCCcCc
Confidence 5677899999999999999999984
No 98
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=55.26 E-value=45 Score=24.42 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
..+.+++.+ ||....+-||+-.+.-=+..++++++|+.....++..-....+|.+.
T Consensus 10 g~~~v~~~I-nG~~~~flVDTGAs~t~is~~~A~~Lgl~~~~~~~~~~~~ta~G~~~ 65 (121)
T TIGR02281 10 GHFYATGRV-NGRNVRFLVDTGATSVALNEEDAQRLGLDLNRLGYTVTVSTANGQIK 65 (121)
T ss_pred CeEEEEEEE-CCEEEEEEEECCCCcEEcCHHHHHHcCCCcccCCceEEEEeCCCcEE
Confidence 345666665 78899999999888888889999999998644466665555566543
No 99
>KOG0005|consensus
Probab=54.13 E-value=35 Score=22.59 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=34.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
|.+.|.++.|....+.+++..+++.+-+++-++-|+++.
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~ 39 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCch
Confidence 346788899999999999999999999999999999863
No 100
>KOG1574|consensus
Probab=52.95 E-value=35 Score=30.33 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=36.1
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
.|.+.|..-+....+..|+..|||+|||-.+++.+|=+- -|+|.+.
T Consensus 5 ~melkVWVdgeer~VcGvt~~TTCqdVV~ALa~aigq~G---rf~iVEK 50 (375)
T KOG1574|consen 5 EMELKVWVDGEERIVCGVTERTTCQDVVIALAQAIGQKG---RFTIVEK 50 (375)
T ss_pred hceEEEEeccceeeeecccCCccHHHHHHHHHHHhCCCC---ceEEeeh
Confidence 455667755556778899999999999999999888762 2888775
No 101
>KOG4229|consensus
Probab=52.77 E-value=9.3 Score=38.39 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=63.1
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 80 AEKCVLKTQGTRRRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 80 c~~~L~r~~~~g~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|-..+.++...+++..+|+..+.++.....+....+.+.+|......-++++++.|......+..+..+.. ++|.
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~ 654 (1062)
T KOG4229|consen 580 SDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRP---SLFE 654 (1062)
T ss_pred ccchhhcccCCCCCccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCCh---hhhc
Confidence 44555666778899999999999999977888889999999999999999999999999988888877544 5544
No 102
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=52.76 E-value=38 Score=24.32 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=37.0
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCeeE
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYTI 165 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~~ 165 (180)
.+.+.|.....+..|+....++-+|.+. ...|+||++.|+....
T Consensus 26 ~K~~rvs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~YgdqER~ 70 (98)
T cd01786 26 LKQLRASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYGDQERI 70 (98)
T ss_pred chheeeeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeCCeeee
Confidence 5667777778899999999999999873 8999999999985443
No 103
>KOG1892|consensus
Probab=50.56 E-value=33 Score=34.58 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=40.2
Q ss_pred eEEEeeCCC----EEEEEecccCCHHHHHHHHHHHcC----CCCCCCceEEEEEecCCe
Q psy8906 113 ARFYFMDGS----YHAVEFHPSATARDAVALIRAKLG----LRDGALGYAIYEVGTLGY 163 (180)
Q Consensus 113 ~~i~~~dg~----~~~v~vds~tt~~ev~~~i~~~lg----l~~~~~gfaL~~~~~~~~ 163 (180)
.+|||-|+. ++-|-|.|..|+.||++.++++.. +-. ...|+||++--+|.
T Consensus 43 MRFYFQDag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrMLS-~p~YsLyEVH~nGE 100 (1629)
T KOG1892|consen 43 MRFYFQDAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRMLS-SPKYSLYEVHVNGE 100 (1629)
T ss_pred EEEEeecccchhhhheeEecccccHHHHHHHHHHHhCcchhhhc-CCCceeeeeecCcc
Confidence 479999875 457889999999999999999953 222 58899999866665
No 104
>KOG0792|consensus
Probab=49.97 E-value=25 Score=35.33 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYA 154 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfa 154 (180)
..+.++|.|.|+....+.+.+.+|-.+..+.++.+|++.. ...|+
T Consensus 21 s~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e-~~yFg 65 (1144)
T KOG0792|consen 21 SCVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELRE-KEYFG 65 (1144)
T ss_pred ceEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccc-ccccc
Confidence 5778899999999999999999999999999999999997 78888
No 105
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=49.86 E-value=1.2e+02 Score=24.45 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=27.9
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCeeEEeecCcccchh
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYTIYEVGALGYAIY 176 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~~~~~~~~~~~~~ 176 (180)
...+-|....|++|+++.+.+++++.+. ..-.=|++..+. .++.+-..+-.|.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~--ki~~~~~~d~~i~ 88 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNH--KIYKILSEDEPIS 88 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETT--EEEEEE-TTSBGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECC--EEEeecCCCCchh
Confidence 3578888999999999999999999753 334445544222 5555554554443
No 106
>KOG3527|consensus
Probab=47.90 E-value=23 Score=34.93 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
+++.++|.++||+...+.|+-.....+++..+|+.|+|-. .+.|+|-....+
T Consensus 30 k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliE-kdyfgl~~~~~~ 81 (975)
T KOG3527|consen 30 KDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLE-KDYFGLTYLTSS 81 (975)
T ss_pred CCccceEEEeeCCcceeeeecccccchhHHHHhhccchhh-hhhceeEEecCC
Confidence 7889999999999999999999999999999999999876 799998765433
No 107
>KOG4261|consensus
Probab=47.10 E-value=16 Score=35.64 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=40.3
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.+|-++||....+.||-+-++.++.-.||.++||.+ ...|+|.-
T Consensus 87 lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItn-yeeyslvr 130 (1003)
T KOG4261|consen 87 LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN-YEEYSLVR 130 (1003)
T ss_pred ceeeecccccceeeecccccHHHHHHHHHhccCccc-hhhhhhhH
Confidence 468899999999999999999999999999999997 79999853
No 108
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=46.41 E-value=29 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=19.2
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHH
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALI 140 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i 140 (180)
-|+++||.. ..+...+|+.|+++.+
T Consensus 2 ~~~~~~g~~--~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 2 YVFTPKGEI--IELPAGATVLDFAYAI 26 (60)
T ss_pred EEECCCCCE--EEcCCCCCHHHHHHHH
Confidence 378899884 5577888999988755
No 109
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.21 E-value=76 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
+...+|..+.+.|+-.++-.|+...+++.++... . +.|..
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~--~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGV--V-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCC--c-eEEEE
Confidence 5678999999999999999999999999999875 2 66544
No 110
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=43.33 E-value=1.1e+02 Score=21.22 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred eCCCEEEEEecc--cCCHHHHHHHHHHHcCCCCCCCceEEEEEecCC
Q psy8906 118 MDGSYHAVEFHP--SATARDAVALIRAKLGLRDGALGYAIYEVGTLG 162 (180)
Q Consensus 118 ~dg~~~~v~vds--~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~ 162 (180)
++|....+.+++ .++..|+.+++.+..++. .|.|=-...+|
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~----~f~lKYlDde~ 49 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN----DIQIKYVDEEN 49 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC----cceeEEEcCCC
Confidence 567778888888 779999999999999986 56654444443
No 111
>KOG3531|consensus
Probab=42.86 E-value=68 Score=31.75 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=46.6
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+.-..+.|.+.|++...+.|..-.-.+-+..++|++|+|-. .+.|||=...-++.+.
T Consensus 37 gk~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e-~dyfglef~~~~~~~~ 93 (1036)
T KOG3531|consen 37 GKICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVE-CDYFGLEFQDINGNHC 93 (1036)
T ss_pred CceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceee-ccccceeeccccCceE
Confidence 44566788899999999999999999999999999999997 6999996554444433
No 112
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=41.16 E-value=30 Score=25.66 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=31.0
Q ss_pred CCeeeEEEeeCCCEE-EEEecccCCHHHHHHHHHHHcC
Q psy8906 109 RPIYARFYFMDGSYH-AVEFHPSATARDAVALIRAKLG 145 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~-~v~vds~tt~~ev~~~i~~~lg 145 (180)
..+.++|.++||+.. ...+.+++||+++-+.|...-+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p 40 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWP 40 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcc
Confidence 457789999999754 6788899999999999986654
No 113
>PLN02560 enoyl-CoA reductase
Probab=39.65 E-value=55 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=29.0
Q ss_pred eeEEEeeCCCEE---EEEecccCCHHHHHHHHHHHcCC
Q psy8906 112 YARFYFMDGSYH---AVEFHPSATARDAVALIRAKLGL 146 (180)
Q Consensus 112 ~~~i~~~dg~~~---~v~vds~tt~~ev~~~i~~~lgl 146 (180)
.+.|...+|... .+++++.+|++|+-+.|.++-+.
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~ 39 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK 39 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC
Confidence 456666677765 79999999999999999999876
No 114
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=39.30 E-value=50 Score=24.26 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHhhcC----CCeeeEEEeeCCCEEEEEecccCCHHHHHHH
Q psy8906 99 REEILCTINR----RPIYARFYFMDGSYHAVEFHPSATARDAVAL 139 (180)
Q Consensus 99 ~~Ei~a~~~~----~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~ 139 (180)
..+|.++..+ +...+.|++.|++..-+.+++--|++.++..
T Consensus 60 ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 60 FSEIRAIFSRRYLLQNTALELFLASRTSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred HHHHHHHHHHhhhcccceEEEEEeCCceEEEEeCcHHHHHHHHhh
Confidence 5678888776 4677899999999999999999999988864
No 115
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=39.15 E-value=1.3e+02 Score=20.92 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhc
Q psy8906 13 ELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRC 65 (180)
Q Consensus 13 Eiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~ 65 (180)
|+.|+.|-++|....+-+....+.|. ..-+=+.-.||.+.++.-|-..++..
T Consensus 14 EvlC~~I~dln~~~~~at~E~l~~~L-~~~yp~i~~Ps~e~l~~~L~~Li~er 65 (80)
T PF10264_consen 14 EVLCWVISDLNAAGQPATQETLREHL-RKHYPGIAIPSQEVLYNTLGTLIKER 65 (80)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHH-HHhCCCCCCCCHHHHHHHHHHHHHcC
Confidence 78888888888877655543344432 22224444577666666666655544
No 116
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.90 E-value=92 Score=20.26 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCCEEEEEecccCCHHH--HHHHHHHHcCCCCC
Q psy8906 119 DGSYHAVEFHPSATARD--AVALIRAKLGLRDG 149 (180)
Q Consensus 119 dg~~~~v~vds~tt~~e--v~~~i~~~lgl~~~ 149 (180)
|.....+.+.+..|..| ++..+|+.|||...
T Consensus 14 d~~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 14 DRMRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 44567788888777776 89999999999863
No 117
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=38.03 E-value=1.2e+02 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEe
Q psy8906 92 RRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEF 127 (180)
Q Consensus 92 ~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~v 127 (180)
.+...|...|+- ..+.+.-.||||+. -|.|
T Consensus 63 ~d~Vm~GV~emi-----~~vqVEatFpDGTk-LVtv 92 (96)
T cd00390 63 RDDVMEGVPEML-----HDVQVEATFPDGTK-LVTV 92 (96)
T ss_pred HHhcccCHHHhh-----cceeEEEEeCCCCE-EEEc
Confidence 344555555443 35678899999994 4444
No 118
>PRK13241 ureA urease subunit gamma; Provisional
Probab=37.58 E-value=1.2e+02 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEec
Q psy8906 93 RQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFH 128 (180)
Q Consensus 93 R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vd 128 (180)
+...|...|.- ..+.+.-.||||+. -|.|+
T Consensus 67 ddVm~GV~emi-----~~vqVEatFpDGTk-LVTvh 96 (100)
T PRK13241 67 DDVMEGVPEMI-----PDVQVEATFPDGTK-LVTVH 96 (100)
T ss_pred HhcccCHHHhh-----cceeEEEEcCCCCE-EEEec
Confidence 44455554443 35678899999994 44443
No 119
>KOG4261|consensus
Probab=34.64 E-value=97 Score=30.50 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=46.7
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEec--CCeeEEeecC-cccch
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGT--LGYTIYEVGA-LGYAI 175 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~--~~~~~~~~~~-~~~~~ 175 (180)
.++|..- +-.+.+.++++|++=|.+.-|-+++...+. +..|+||.... ....|.|.|- ++|.+
T Consensus 5 sl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~ 71 (1003)
T KOG4261|consen 5 SLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYM 71 (1003)
T ss_pred EEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHH
Confidence 4455544 678999999999999999999999877654 79999998743 3445667663 44443
No 120
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=34.61 E-value=1.7e+02 Score=21.82 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=25.2
Q ss_pred EecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 126 EFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 126 ~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
-|.+..|+++++..|-++|+|.. .+ .-||+
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~-~k-~flfV 75 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSA-KK-VTLAI 75 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCCh-hH-EEEEE
Confidence 68899999999999999999985 45 55555
No 121
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=33.51 E-value=1.9e+02 Score=21.10 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.8
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
...+-|....|+++++..|-++|+|.. .+ |||.-.++
T Consensus 42 k~KflVp~~~tv~~f~~~irk~l~l~~-~~--slfl~Vn~ 78 (112)
T cd01611 42 KKKYLVPSDLTVGQFVYIIRKRIQLRP-EK--ALFLFVNN 78 (112)
T ss_pred CceEEecCCCCHHHHHHHHHHHhCCCc-cc--eEEEEECC
Confidence 456679999999999999999999875 33 45544333
No 122
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=33.25 E-value=1.5e+02 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEec
Q psy8906 93 RQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFH 128 (180)
Q Consensus 93 R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vd 128 (180)
+...|...|.. ..+.+.-.||||+. -|.|+
T Consensus 67 ~dVm~GV~~mi-----~~vqVEatFpDGTK-LVTvh 96 (102)
T TIGR00193 67 DDVMEGVAEML-----HEVQIEATFPDGTK-LVTVH 96 (102)
T ss_pred HhcccCHHHhh-----cceeEEEEcCCCCE-EEEeC
Confidence 34455544443 35678899999994 44443
No 123
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=33.22 E-value=1.4e+02 Score=23.59 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHH-----HHHHHHHhhhccCCCCCchHHHHHHHHHHHHh
Q psy8906 12 TELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLV-----RKYLVAHLKRCSSDCVSEEGKYARFAEKCVLK 86 (180)
Q Consensus 12 DEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l-----~~yL~~fl~~~~~~~~~~~~~~a~~c~~~L~r 86 (180)
..+...++.+..++.++..+ ....+++..++..++++...+ .+-+..-+.....|.+.++...|..|...+.+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR--~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVR--EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHH--HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788888888887664 788899999888887211122 23455566666667777788899999998876
Q ss_pred hc
Q psy8906 87 TQ 88 (180)
Q Consensus 87 ~~ 88 (180)
..
T Consensus 207 ~~ 208 (228)
T PF12348_consen 207 HF 208 (228)
T ss_dssp HH
T ss_pred HC
Confidence 53
No 124
>PF08008 Viral_cys_rich: Viral cysteine rich; InterPro: IPR012641 Members of this family are polydna viral proteins that contain a cysteine rich motif []. Some members of this family have multiple copies of this domain.; PDB: 1XJ1_A 1XI7_A.
Probab=32.52 E-value=15 Score=25.86 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHH
Q psy8906 13 ELYLQLIKQTTDHPDPNSRVNLRHWA 38 (180)
Q Consensus 13 Eiy~QliKQtt~Np~~~s~~~~rgW~ 38 (180)
|.|.||+||++.+.=.+-. .++|.
T Consensus 56 ~~y~~Li~~lN~tNf~eL~--~~Y~~ 79 (85)
T PF08008_consen 56 ELYLELIKQLNETNFEELR--RQYWK 79 (85)
T ss_dssp --------------------------
T ss_pred ccccccccccccccccccc--ccccc
Confidence 6899999999988765542 56665
No 125
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=31.18 E-value=57 Score=21.12 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEecccCCHHH--HHHHHHHHcCCCC
Q psy8906 122 YHAVEFHPSATARD--AVALIRAKLGLRD 148 (180)
Q Consensus 122 ~~~v~vds~tt~~e--v~~~i~~~lgl~~ 148 (180)
...+.+.|..|..| ++..+|+++||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 56777777556554 8999999999985
No 126
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=30.82 E-value=1.1e+02 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.0
Q ss_pred CEEEEEecccCCHHHHHHHHHHHc
Q psy8906 121 SYHAVEFHPSATARDAVALIRAKL 144 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~~l 144 (180)
....+++...+|++|+++.+..+-
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~ 42 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKF 42 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHC
Confidence 567888888899999999997764
No 127
>KOG4631|consensus
Probab=30.44 E-value=22 Score=25.41 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=13.8
Q ss_pred cccccCCCChhHHHHH
Q psy8906 2 ERAMRKDSLLTELYLQ 17 (180)
Q Consensus 2 ~~~l~~~~LRDEiy~Q 17 (180)
+++|+.|-+|||+|.-
T Consensus 34 ~~GLkDPW~RNevwrY 49 (100)
T KOG4631|consen 34 AKGLKDPWGRNEVWRY 49 (100)
T ss_pred HccccCchhcchhhhc
Confidence 4789999999999864
No 128
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.17 E-value=53 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.2
Q ss_pred CEEEEEecccCCHHH--HHHHHHHHcCCCC
Q psy8906 121 SYHAVEFHPSATARD--AVALIRAKLGLRD 148 (180)
Q Consensus 121 ~~~~v~vds~tt~~e--v~~~i~~~lgl~~ 148 (180)
....+.+.+..|..| ++.++|+.+||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 367778888666655 8999999999985
No 129
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=29.90 E-value=1.8e+02 Score=19.64 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=40.0
Q ss_pred eeEEEeeCC--CEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE-ecCCeeEEee
Q psy8906 112 YARFYFMDG--SYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV-GTLGYTIYEV 168 (180)
Q Consensus 112 ~~~i~~~dg--~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~-~~~~~~~~~~ 168 (180)
.+.|...+. ......++...|++|+-..|-...|+. ++..-|+.. ..++..+.+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~ 60 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEEL 60 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEES
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCcccccc
Confidence 445665555 378899999999999999999999997 477778776 3444444333
No 130
>PF00530 SRCR: Scavenger receptor cysteine-rich domain; InterPro: IPR001190 The egg peptide speract receptor is a transmembrane glycoprotein []. Other members of this family include the macrophage scavenger receptor type I (a membrane glycoprotein implicated in the pathologic deposition of cholesterol in arterial walls during artherogenesis), an enteropeptidase and T-cell surface glycoprotein CD5 (may act as a receptor in regulating T-cell proliferation).; GO: 0005044 scavenger receptor activity, 0016020 membrane; PDB: 2XRC_D 2JP0_A 2JOP_A 2OYA_A 2OY3_A 1BY2_A 2OTT_Y 2JA4_A.
Probab=28.65 E-value=86 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.3
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCC
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLR 147 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~ 147 (180)
.+.|++.+|....|--+.|+. +.+.-+|++||..
T Consensus 10 ~vev~~~~~~W~~vC~~~w~~--~~a~vvCrqLG~~ 43 (99)
T PF00530_consen 10 RVEVCFYNGSWGTVCDDGWSM--NEANVVCRQLGYG 43 (99)
T ss_dssp EEEEEEETTEEEEEBTTT-SH--HHHHHHHHHTTSS
T ss_pred EEEEEEECCEEEeEECCCcch--hHHHHHhhhhhcc
Confidence 367877799999888887654 3778899999985
No 131
>PRK13242 ureA urease subunit gamma; Provisional
Probab=28.44 E-value=2.3e+02 Score=20.49 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEec
Q psy8906 93 RQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFH 128 (180)
Q Consensus 93 R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vd 128 (180)
+...|...|.. ..+.+.-.||||+. -|.|+
T Consensus 67 ~dVm~GV~~mi-----~~vqVEatFpDGTk-LVTvh 96 (100)
T PRK13242 67 DDVMDGVPDLL-----PLIQVEAVFSDGSR-LVSLH 96 (100)
T ss_pred HhcccCHHHhh-----cceeEEEEcCCCCE-EEEec
Confidence 44455554443 35678899999994 44443
No 132
>PF14039 YusW: YusW-like protein
Probab=28.43 E-value=1.1e+02 Score=21.59 Aligned_cols=32 Identities=6% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEecccCCHHHHHHHHHHHcCCCCCCCceEE
Q psy8906 124 AVEFHPSATARDAVALIRAKLGLRDGALGYAI 155 (180)
Q Consensus 124 ~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL 155 (180)
.+.+++.|+-.+|+.++.+.++|.+....|-|
T Consensus 55 ~L~~~~~t~~~evi~~Vl~~f~Ld~dy~~fel 86 (92)
T PF14039_consen 55 ELSFDSDTSEEEVIDQVLKAFNLDPDYQEFEL 86 (92)
T ss_pred hCCCCCCCChHHHHHHHHHHhCCCccceEEEE
Confidence 46788999999999999999999865666655
No 133
>KOG3739|consensus
Probab=27.86 E-value=1.2e+02 Score=28.78 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=49.5
Q ss_pred CeeeEEEeeCCC------EEEEEecccCCHHHHHHHHHHHcCCC-------CCCCceEEEEEecCCeeEEeecCccc
Q psy8906 110 PIYARFYFMDGS------YHAVEFHPSATARDAVALIRAKLGLR-------DGALGYAIYEVGTLGYTIYEVGALGY 173 (180)
Q Consensus 110 ~i~~~i~~~dg~------~~~v~vds~tt~~ev~~~i~~~lgl~-------~~~~gfaL~~~~~~~~~~~~~~~~~~ 173 (180)
.+.+.||+|=-. ...++|-...++.||+.-+|=+--+. +..+.|+||++-.||....|.++||=
T Consensus 265 s~rieIyip~s~~~~rn~pl~i~v~kta~I~EvIGyil~qYs~e~~~~~~ee~~n~y~L~ivEdDGe~eedFPpLDr 341 (634)
T KOG3739|consen 265 SKRIEIYIPMSCSPDRNFPLKIEVRKTARIQEVIGYILLQYSLEFDSPPLEEDPNDYQLYIVEDDGEIEEDFPPLDR 341 (634)
T ss_pred ceeEEEEEecCcccccCCCeEEEEeechhHHHHHHHHHHHHhhcCCCCCcccCchhheEEEeccCCcccccCCCccc
Confidence 445678876321 45788888999999999999885443 22688999999999988899999873
No 134
>PF15599 Imm38: Immunity protein 38
Probab=27.18 E-value=92 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEEe---cCCeeEEeecCcccch
Q psy8906 133 ARDAVALIRAKLGLRDGALGYAIYEVG---TLGYTIYEVGALGYAI 175 (180)
Q Consensus 133 ~~ev~~~i~~~lgl~~~~~gfaL~~~~---~~~~~~~~~~~~~~~~ 175 (180)
.++.+.+++.++|+.+ .-|.+|... ++|....++++-+|..
T Consensus 3 lk~~i~~l~~k~g~~~--~~~~~~~~~~~~~dg~~~i~~~~~~Y~~ 46 (124)
T PF15599_consen 3 LKAEIDELARKIGAPD--NEYPLFFRDDPFGDGSPYIEIDNDGYHY 46 (124)
T ss_pred HHHHHHHHHHHhCCCc--ccccccccCCCCCCCceEEEEeCCEEEE
Confidence 3567888999999986 666677665 7788877777777653
No 135
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=27.01 E-value=92 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=31.4
Q ss_pred HhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 104 CTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 104 a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+++.+.+ +.|.+-+.....|.-|.-.+|+|+++.+|..+++.+
T Consensus 253 ~lr~~~~--L~i~~~~~g~v~I~tD~melagdlVQsla~fl~i~~ 295 (431)
T PF14782_consen 253 SLRDGSP--LCISINNSGEVTIRTDDMELAGDLVQSLASFLNITE 295 (431)
T ss_pred eccCCCc--EEEEecCCceEEEEeCcHHHHHHHHHHHHHHhCCcc
Confidence 3443444 334433333788888899999999999999999986
No 136
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=26.12 E-value=57 Score=21.05 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEecccCCHHH--HHHHHHHHcCCCCC
Q psy8906 123 HAVEFHPSATARD--AVALIRAKLGLRDG 149 (180)
Q Consensus 123 ~~v~vds~tt~~e--v~~~i~~~lgl~~~ 149 (180)
..+.+.+..|..| ++..+|+.+||...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 6677777566554 89999999999853
No 137
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=87 Score=22.43 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHhhhccCCCCCchHHHHHHHHHHHHhh
Q psy8906 56 KYLVAHLKRCSSDCVSEEGKYARFAEKCVLKT 87 (180)
Q Consensus 56 ~yL~~fl~~~~~~~~~~~~~~a~~c~~~L~r~ 87 (180)
.-|..||..+..-.+...-.+|-||.+||.+-
T Consensus 20 RrLv~HL~~rsdvQNIDLMnLAgFCRNCLs~W 51 (104)
T COG3492 20 RRLVEHLQERSDVQNIDLMNLAGFCRNCLSNW 51 (104)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 34666777776322323456889999999753
No 138
>PF09715 Plasmod_dom_1: Plasmodium protein of unknown function (Plasmod_dom_1); InterPro: IPR006410 These sequences represent an uncharacterised family consisting of a small number of hypothetical proteins of the malaria parasite Plasmodium falciparum (isolate 3D7).
Probab=25.23 E-value=2.2e+02 Score=19.10 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=28.7
Q ss_pred hhHHHHHH-HHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHH
Q psy8906 11 LTELYLQL-IKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVA 60 (180)
Q Consensus 11 RDEiy~Ql-iKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~ 60 (180)
=|+||.+. +.+--.|.+..+. ..--=-+++++.+++||..-...+|+.+
T Consensus 13 fDnifidklId~~i~nk~s~~~-e~v~~n~l~~~~a~~p~~~i~~~~Yi~~ 62 (67)
T PF09715_consen 13 FDNIFIDKLIDNNIQNKSSFIP-EDVPENSLSLMTAAIPFFAIPIFPYIVK 62 (67)
T ss_pred HHHHHHHHHHccccccCCCCcH-HHhHHHHHHHHHHhccchhhHHHHHHHH
Confidence 37788774 3333344443442 1233446778788877676667788754
No 139
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=25.15 E-value=53 Score=18.96 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=11.5
Q ss_pred CCCChhHHHHHHHH
Q psy8906 7 KDSLLTELYLQLIK 20 (180)
Q Consensus 7 ~~~LRDEiy~QliK 20 (180)
-|.|=-|||.|++|
T Consensus 6 vpGlW~~IY~qi~k 19 (33)
T PF08465_consen 6 VPGLWTEIYTQILK 19 (33)
T ss_pred cccHHHHHHHHHHh
Confidence 46777899999987
No 140
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=25.00 E-value=1e+02 Score=22.54 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=25.0
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
...+.|.+.+|+.++-..|..++|+.+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~ 43 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPF 43 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcc
Confidence 3678899999999999999999999863
No 141
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=24.45 E-value=47 Score=23.07 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHH-HcCCCCCCCceEEEEEecCCeeEEeecCcc
Q psy8906 130 SATARDAVALIRA-KLGLRDGALGYAIYEVGTLGYTIYEVGALG 172 (180)
Q Consensus 130 ~tt~~ev~~~i~~-~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~ 172 (180)
-+|.+++++.+++ +||+.. ..+.+ .+..+|+++...
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~--P~v~~-----~~~ilyd~de~~ 44 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNE--PDVSV-----GGTILYDSDEEE 44 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SS--EEEEE-----S-EEEE-SSSSS
T ss_pred hCcHHHHHHHHHHhccCCCC--CEEEe-----CCCEEEcCCcch
Confidence 4699999999876 788864 22322 677789988733
No 142
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=24.43 E-value=2.3e+02 Score=19.19 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEEEecc-cCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEe
Q psy8906 122 YHAVEFHP-SATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYE 167 (180)
Q Consensus 122 ~~~v~vds-~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~ 167 (180)
+..|.+|. ..++.|+-..|+.+-+|.. ...|-|-+...+....|.
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~-~~dfdL~i~na~t~eeY~ 56 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGK-GTDFDLVIYNAQTGEEYK 56 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT----TTTEEEEEEESSS--EE-
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCc-CCcCCEEEECCCCCCccC
Confidence 45556653 5689999999999999976 466999888777666554
No 143
>KOG2689|consensus
Probab=24.36 E-value=1.5e+02 Score=25.49 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=34.3
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
-.++|.++||.+....|.+..|-.+|..++--..|...
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~ 248 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGL 248 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCC
Confidence 34679999999999999999999999999999988875
No 144
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.20 E-value=2.9e+02 Score=19.87 Aligned_cols=59 Identities=19% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHhhcCCCeeeEEEee--------CCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 100 EEILCTINRRPIYARFYFM--------DGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 100 ~Ei~a~~~~~~i~~~i~~~--------dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
.|.+.++.+.|-.++|-+- +=....+-|....|+++++..|-++|.|.. . -|||.-.++
T Consensus 4 ~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~-~--~alfl~Vn~ 70 (104)
T PF02991_consen 4 EESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSP-E--QALFLFVNN 70 (104)
T ss_dssp HHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--T-T--S-EEEEBTT
T ss_pred HHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCC-C--ceEEEEEcC
Confidence 4677777777766664322 111234457789999999999999999974 3 445544343
No 145
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=23.10 E-value=97 Score=25.48 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=42.4
Q ss_pred eeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 117 FMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 117 ~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
..||....+-||.-.|.=-+.+.-++++|+..+..+|..-+.+-+|.+-
T Consensus 111 ~VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~l~y~~~v~TANG~~~ 159 (215)
T COG3577 111 RVNGKKVDFLVDTGATSVALNEEDARRLGIDLNSLDYTITVSTANGRAR 159 (215)
T ss_pred EECCEEEEEEEecCcceeecCHHHHHHhCCCccccCCceEEEccCCccc
Confidence 4699999999999888888999999999998778899998887777654
No 146
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=23.06 E-value=1.4e+02 Score=19.42 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.3
Q ss_pred CEEEEEecccCCHHHHHHHHHHHcC
Q psy8906 121 SYHAVEFHPSATARDAVALIRAKLG 145 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~~lg 145 (180)
....+.++..+|++|+++.+..+.+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~ 40 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYP 40 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCc
Confidence 3467777778999999999998754
No 147
>KOG0010|consensus
Probab=22.72 E-value=1.2e+02 Score=28.00 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLR 147 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~ 147 (180)
..+.++|..+++ ...|.|....||.++-+.|+.+.+..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~ 51 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP 51 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC
Confidence 457889999999 89999999999999999999987664
No 148
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=22.43 E-value=1.1e+02 Score=25.29 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=32.5
Q ss_pred eEEEeeCCCE----EEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 113 ARFYFMDGSY----HAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 113 ~~i~~~dg~~----~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
++.|-+.... =.+.|+...++++++..|++.+|+.. ....-+|+..+-
T Consensus 73 lK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~-~t~l~lyEEi~~ 124 (249)
T PF12436_consen 73 LKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPP-DTPLLLYEEIKP 124 (249)
T ss_dssp EEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--T-T--EEEEEEEET
T ss_pred EEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCC-CCceEEEEEecc
Confidence 4555554433 26778899999999999999999975 578899987554
No 149
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=22.24 E-value=1.1e+02 Score=19.20 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHHcCCCC
Q psy8906 130 SATARDAVALIRAKLGLRD 148 (180)
Q Consensus 130 ~tt~~ev~~~i~~~lgl~~ 148 (180)
..|++|+++..+.+||++.
T Consensus 4 gkt~eeAi~~A~~~l~~~~ 22 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGVPR 22 (52)
T ss_dssp ESSHHHHHHHHHHHTT--G
T ss_pred ECCHHHHHHHHHHHhCCCh
Confidence 4699999999999999985
No 150
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.09 E-value=34 Score=24.50 Aligned_cols=14 Identities=0% Similarity=-0.258 Sum_probs=7.5
Q ss_pred CCCCCHHHHHHhhc
Q psy8906 94 QWPPSREEILCTIN 107 (180)
Q Consensus 94 ~~~PS~~Ei~a~~~ 107 (180)
+.|||..|+.++..
T Consensus 33 ~~p~s~~eL~~~l~ 46 (105)
T cd03035 33 KDGLDAATLERWLA 46 (105)
T ss_pred cCCCCHHHHHHHHH
Confidence 44555555555554
No 151
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=22.03 E-value=2.9e+02 Score=20.07 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=27.1
Q ss_pred EecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecC
Q psy8906 126 EFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGA 170 (180)
Q Consensus 126 ~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~ 170 (180)
.|-+.++..++.+.|++.||+.. +-.-+-...||++.-.+.+
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~---~~~~~~~F~dGE~~v~i~~ 43 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPL---GKVETKRFPDGETYVRIPE 43 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-E---E-EEEEE-TTS-EEEEESS
T ss_pred EEEECCCCHHHHHHHHHHhCCce---eeeEEEEcCCCCEEEEecc
Confidence 45567889999999999999963 2233345567776655543
No 152
>KOG4257|consensus
Probab=21.32 E-value=23 Score=34.20 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=39.4
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
.+|++|+|.+++|.+|.-+|+.-|+..++..+|+. ...|+.|.++
T Consensus 5 ~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~~--~~~~~~~acr 49 (974)
T KOG4257|consen 5 ARVFLPGGASKAVRYDVQTTIERVIHVVARGIGIS--QVAVAHFACR 49 (974)
T ss_pred cccccCCCcceeeeecchhheeeeeeeeeeccCCC--chhhhheeee
Confidence 56899999999999999999999999999999997 4667777664
No 153
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=21.09 E-value=3.3e+02 Score=19.71 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 130 SATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 130 ~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
++.-.+.+..+.+++++. ..+|+++..-+||..--
T Consensus 59 ~~~~~~~~~~lr~~l~~~--~~~f~~vLiGKDG~vK~ 93 (118)
T PF13778_consen 59 KPLSPEDIQALRKRLRIP--PGGFTVVLIGKDGGVKL 93 (118)
T ss_pred CcCCHHHHHHHHHHhCCC--CCceEEEEEeCCCcEEE
Confidence 566678899999999998 48899999999987653
No 154
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=21.07 E-value=1.4e+02 Score=20.03 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.3
Q ss_pred CEEEEEecccCCHHHHHHHHHHHcC
Q psy8906 121 SYHAVEFHPSATARDAVALIRAKLG 145 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~~lg 145 (180)
....+.++ .+|++|+++.+.++.+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p 39 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYP 39 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCc
Confidence 44567776 8999999999998864
Done!