Query psy8906
Match_columns 180
No_of_seqs 127 out of 530
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:32:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3au4_A Myosin-X; protein-prote 100.0 2.2E-41 7.5E-46 306.5 17.1 158 1-162 110-268 (555)
2 3pvl_A Myosin VIIA isoform 1; 100.0 8.3E-42 2.8E-46 315.1 13.2 150 2-162 165-314 (655)
3 3qij_A Protein 4.1; cytoskelet 98.6 6.8E-08 2.3E-12 80.9 7.4 58 108-166 15-72 (296)
4 1h4r_A Merlin; FERM, neurofibr 98.6 7.6E-08 2.6E-12 80.8 7.6 69 95-166 5-75 (314)
5 1ef1_A Moesin; membrane, FERM 98.5 1.6E-07 5.4E-12 77.9 7.6 55 110-166 1-55 (294)
6 1wgr_A Growth factor receptor- 98.5 6E-07 2E-11 64.1 8.0 67 108-175 7-73 (100)
7 3ivf_A Talin-1; FERM domain, c 98.3 3.6E-07 1.2E-11 78.4 5.0 67 93-160 68-134 (371)
8 2i1j_A Moesin; FERM, coiled-co 98.3 9.5E-07 3.2E-11 80.4 7.8 57 108-166 2-58 (575)
9 2al6_A Focal adhesion kinase 1 98.1 4.5E-06 1.5E-10 71.9 6.4 52 112-164 9-65 (375)
10 4dxa_B KREV interaction trappe 98.0 8.7E-06 3E-10 68.6 5.8 50 110-163 5-57 (322)
11 4gmv_A RAS-associated and plec 97.8 5.8E-05 2E-09 63.0 8.5 56 109-165 30-85 (281)
12 3ddc_B RAS association domain- 97.7 5.6E-05 1.9E-09 58.1 6.1 51 113-163 79-130 (163)
13 3tca_A Amyloid beta A4 precurs 97.5 0.00033 1.1E-08 57.1 8.7 62 109-171 33-94 (291)
14 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00044 1.5E-08 51.3 7.1 48 112-160 13-60 (128)
15 3hk0_A Growth factor receptor- 97.2 0.00046 1.6E-08 56.8 6.1 55 109-164 7-61 (256)
16 4eku_A Protein-tyrosine kinase 97.0 0.0011 3.9E-08 57.4 6.8 63 101-166 15-87 (392)
17 2al3_A TUG long isoform; TUG U 96.6 0.0026 8.9E-08 44.3 4.7 47 108-156 7-53 (90)
18 1wgy_A RAP guanine nucleotide 96.4 0.0052 1.8E-07 43.8 5.5 55 109-165 8-62 (104)
19 2j0j_A Focal adhesion kinase 1 96.4 0.0053 1.8E-07 56.1 6.4 53 113-166 10-67 (656)
20 2dhz_A RAP guanine nucleotide 96.3 0.0086 3E-07 43.7 5.8 57 109-165 8-68 (120)
21 3dbh_I NEDD8; cell cycle, acti 95.1 0.067 2.3E-06 35.5 6.5 41 108-148 10-50 (88)
22 1wxa_A Afadin, AF-6 protein; R 94.8 0.095 3.3E-06 37.8 7.0 48 112-159 11-63 (116)
23 1c1y_B Proto-onkogene serine/t 94.4 0.12 4.2E-06 34.7 6.1 46 112-159 3-48 (77)
24 2l05_A Serine/threonine-protei 94.3 0.15 5.1E-06 35.5 6.6 48 110-159 17-64 (95)
25 3mtn_B UBA80, ubcep1, ubiquiti 94.1 0.1 3.5E-06 34.2 5.4 46 109-156 2-47 (85)
26 2c5l_C Phosphoinositide-specif 94.1 0.18 6.3E-06 36.5 7.0 52 109-160 6-65 (117)
27 1wxm_A A-RAF proto-oncogene se 94.1 0.14 4.8E-06 35.1 6.0 47 111-159 8-54 (86)
28 2cs4_A Protein C12ORF2; GTP bi 93.9 0.054 1.9E-06 37.9 3.7 50 109-161 6-55 (95)
29 2pjh_A Protein NPL4, nuclear p 93.7 0.024 8.3E-07 38.1 1.6 49 109-160 3-51 (80)
30 3a9j_A Ubiquitin; protein comp 93.6 0.13 4.5E-06 32.8 5.1 45 111-157 1-45 (76)
31 3ivf_A Talin-1; FERM domain, c 93.6 0.094 3.2E-06 44.4 5.5 49 110-160 3-54 (371)
32 3phx_B Ubiquitin-like protein 93.5 0.17 5.7E-06 33.0 5.5 46 109-156 3-48 (79)
33 1wyw_B Ubiquitin-like protein 93.5 0.12 4E-06 35.6 4.9 52 104-157 15-66 (97)
34 3n3k_B Ubiquitin; hydrolase, p 93.4 0.11 3.7E-06 34.2 4.5 47 109-157 2-48 (85)
35 1ndd_A NEDD8, protein (ubiquit 93.4 0.14 4.7E-06 32.7 4.9 44 111-156 1-44 (76)
36 3cf6_E RAP guanine nucleotide 93.1 0.24 8.1E-06 45.7 7.6 53 110-165 352-404 (694)
37 2uwq_A Apoptosis-stimulating o 92.9 0.12 4.2E-06 35.4 4.1 49 108-161 4-54 (86)
38 3ny5_A Serine/threonine-protei 92.7 0.31 1E-05 34.1 6.0 49 109-159 12-60 (96)
39 2dzi_A Ubiquitin-like protein 92.6 0.32 1.1E-05 31.5 5.9 40 109-148 6-45 (81)
40 1rrb_A RAF-1 RBD, RAF proto-on 92.3 0.3 1E-05 34.7 5.7 46 112-159 20-65 (107)
41 3v6c_B Ubiquitin; structural g 92.3 0.32 1.1E-05 32.7 5.7 41 108-148 15-55 (91)
42 4eew_A Large proline-rich prot 92.1 0.32 1.1E-05 32.3 5.5 41 108-148 15-55 (88)
43 1yx5_B Ubiquitin; proteasome, 92.1 0.26 9E-06 33.6 5.2 44 111-156 1-44 (98)
44 2uyz_B Small ubiquitin-related 92.1 0.26 8.9E-06 32.0 4.9 45 110-156 3-47 (79)
45 4hcn_B Polyubiquitin, ubiquiti 92.0 0.28 9.7E-06 33.6 5.2 41 108-148 20-60 (98)
46 3k9o_B Ubiquitin, UBB+1; E2-25 91.9 0.28 9.7E-06 33.1 5.1 44 111-156 2-45 (96)
47 1wh3_A 59 kDa 2'-5'-oligoadeny 91.9 0.41 1.4E-05 31.6 5.8 46 109-156 6-51 (87)
48 4dwf_A HLA-B-associated transc 91.9 0.35 1.2E-05 32.2 5.5 40 109-148 4-43 (90)
49 1we6_A Splicing factor, putati 91.8 0.5 1.7E-05 33.1 6.5 52 95-148 14-69 (111)
50 4fbj_B NEDD8; effector-HOST ta 91.6 0.33 1.1E-05 32.6 5.1 38 111-148 1-38 (88)
51 2kzr_A Ubiquitin thioesterase 90.9 0.27 9.3E-06 32.9 4.1 37 111-148 1-38 (86)
52 3plu_A Ubiquitin-like modifier 90.7 0.48 1.6E-05 32.9 5.2 39 110-148 21-59 (93)
53 2hj8_A Interferon-induced 17 k 90.7 0.57 2E-05 31.3 5.6 39 110-148 4-42 (88)
54 1we7_A SF3A1 protein; structur 90.7 0.73 2.5E-05 32.5 6.4 51 96-148 13-73 (115)
55 2kk8_A Uncharacterized protein 89.9 0.7 2.4E-05 30.8 5.5 46 109-156 9-54 (84)
56 1wju_A NEDD8 ultimate buster-1 89.9 0.64 2.2E-05 32.6 5.4 37 112-148 17-57 (100)
57 2bwf_A Ubiquitin-like protein 89.8 0.74 2.5E-05 29.3 5.4 43 111-156 5-47 (77)
58 1sif_A Ubiquitin; hydrophobic 89.8 0.6 2.1E-05 31.2 5.1 40 109-148 8-47 (88)
59 3vdz_A Ubiquitin-40S ribosomal 89.7 0.69 2.3E-05 32.5 5.5 45 110-156 35-79 (111)
60 2bye_A Phospholipase C, epsilo 89.6 0.57 1.9E-05 33.5 5.0 50 109-158 8-60 (110)
61 2ojr_A Ubiquitin; lanthide-bin 89.6 0.75 2.6E-05 32.2 5.6 40 109-148 34-73 (111)
62 3u30_A Ubiquitin, linear DI-ub 89.4 0.64 2.2E-05 34.9 5.5 45 104-148 14-58 (172)
63 1wy8_A NP95-like ring finger p 89.2 1 3.4E-05 29.8 5.8 46 109-156 6-53 (89)
64 2faz_A Ubiquitin-like containi 88.9 0.88 3E-05 29.2 5.3 45 110-156 2-48 (78)
65 1ttn_A DC-UBP, dendritic cell- 88.5 1 3.4E-05 31.3 5.6 42 107-148 20-61 (106)
66 2klc_A Ubiquilin-1; ubiquitin- 88.3 1.1 3.8E-05 30.8 5.8 43 105-148 20-62 (101)
67 1wf9_A NPL4 family protein; be 88.1 1.2 4E-05 31.0 5.8 39 109-148 6-45 (107)
68 1v2y_A 3300001G02RIK protein; 87.8 0.67 2.3E-05 32.7 4.3 41 108-148 5-45 (105)
69 1wm3_A Ubiquitin-like protein 87.4 1.5 5.2E-05 28.2 5.6 38 111-148 2-39 (72)
70 2dzk_A UBX domain-containing p 87.4 2 6.9E-05 30.2 6.7 46 110-157 13-58 (109)
71 3a4r_A Nfatc2-interacting prot 87.3 2.5 8.4E-05 27.8 6.7 41 108-148 5-46 (79)
72 1vd2_A Protein kinase C, IOTA 87.2 3.5 0.00012 28.2 7.6 54 109-164 5-58 (89)
73 2wyq_A HHR23A, UV excision rep 87.1 1.6 5.3E-05 28.4 5.7 46 109-156 4-52 (85)
74 3b08_A Polyubiquitin-C, ubiqui 86.8 1 3.5E-05 32.5 5.1 38 111-148 1-38 (152)
75 2io0_B Small ubiquitin-related 85.9 1.5 5.2E-05 29.9 5.2 46 109-156 4-49 (91)
76 1uh6_A Ubiquitin-like 5; beta- 85.8 1.4 4.8E-05 30.8 5.1 38 111-148 29-66 (100)
77 3m62_B UV excision repair prot 85.8 0.87 3E-05 31.7 4.0 38 111-148 2-39 (106)
78 1v5o_A 1700011N24RIK protein; 84.7 2.3 8E-05 29.1 5.8 39 110-148 7-49 (102)
79 1uel_A HHR23B, UV excision rep 84.3 2 6.8E-05 29.0 5.2 37 111-147 1-40 (95)
80 1wz0_A Ubiquitin-like protein 84.0 3.8 0.00013 28.6 6.7 41 108-148 22-62 (104)
81 3b1l_X E3 ubiquitin-protein li 84.4 0.21 7.1E-06 32.2 0.0 38 111-148 1-38 (76)
82 3rt3_B Ubiquitin-like protein 83.9 1.9 6.4E-05 31.7 5.3 38 111-148 3-40 (159)
83 2kan_A Uncharacterized protein 83.7 2.7 9.2E-05 28.5 5.7 39 109-148 14-52 (94)
84 3b08_A Polyubiquitin-C, ubiqui 83.6 2.6 9E-05 30.2 6.0 45 110-156 76-120 (152)
85 3rt3_B Ubiquitin-like protein 83.1 2.4 8.3E-05 31.0 5.7 46 109-156 80-125 (159)
86 1wgd_A Homocysteine-responsive 83.0 3 0.0001 27.8 5.7 40 109-148 6-49 (93)
87 1wx8_A Riken cDNA 4931431F19; 82.9 2.7 9.1E-05 28.2 5.4 40 109-149 16-55 (96)
88 2io1_B Small ubiquitin-related 82.8 2 6.8E-05 29.4 4.7 40 109-148 6-45 (94)
89 2kdi_A Ubiquitin, vacuolar pro 82.7 2.2 7.6E-05 30.0 5.1 39 110-148 9-47 (114)
90 3l0w_B Monoubiquitinated proli 82.7 2.1 7.1E-05 32.4 5.3 38 111-148 1-38 (169)
91 3qx1_A FAS-associated factor 1 82.5 4.5 0.00015 26.7 6.4 45 110-157 7-51 (84)
92 1v86_A DNA segment, CHR 7, way 82.4 3.6 0.00012 27.8 5.9 38 110-148 17-54 (95)
93 2k8h_A Small ubiquitin protein 82.2 4 0.00014 28.8 6.3 41 108-148 24-64 (110)
94 3q3f_A Ribonuclease/ubiquitin 82.0 2.2 7.6E-05 33.1 5.3 38 111-148 106-143 (189)
95 4dbg_A Ranbp-type and C3HC4-ty 82.0 2.4 8.2E-05 29.9 5.0 43 109-151 21-67 (105)
96 1wj4_A KIAA0794 protein; UBX d 81.2 3.6 0.00012 29.6 5.9 46 109-157 42-87 (124)
97 1v5t_A 8430435I17RIK protein; 81.1 3.1 0.00011 27.8 5.2 39 110-149 7-46 (90)
98 1yqb_A Ubiquilin 3; structural 80.8 2.6 9E-05 28.8 4.8 39 109-148 21-59 (100)
99 1wx7_A Ubiquilin 3; ubiquitin- 79.7 3.2 0.00011 28.5 5.0 39 109-148 16-54 (106)
100 2d07_B Ubiquitin-like protein 79.6 4 0.00014 27.7 5.4 41 108-148 15-55 (93)
101 2daf_A FLJ35834 protein; hypot 79.4 3.2 0.00011 30.0 4.9 40 109-148 14-54 (118)
102 1j8c_A Ubiquitin-like protein 79.2 4.5 0.00016 28.9 5.8 39 109-148 31-69 (125)
103 1lfd_A Ralgds; RAL, effector i 78.5 9 0.00031 26.1 6.7 46 119-164 14-61 (87)
104 2kd0_A LRR repeats and ubiquit 77.7 5.1 0.00017 26.4 5.4 34 115-148 16-49 (85)
105 2kdb_A Homocysteine-responsive 77.3 4.6 0.00016 27.8 5.2 39 109-147 22-63 (99)
106 2l7r_A Ubiquitin-like protein 77.1 4.2 0.00014 27.3 4.9 42 111-156 20-61 (93)
107 3u5e_m 60S ribosomal protein L 76.6 0.51 1.8E-05 34.0 0.0 38 111-148 1-38 (128)
108 1wgg_A Ubiquitin carboxyl-term 76.1 7.9 0.00027 26.2 6.1 39 110-149 7-46 (96)
109 2dzm_A FAS-associated factor 1 75.8 10 0.00035 26.2 6.6 37 113-150 12-48 (100)
110 1k8r_B Protein kinase BYR2; si 75.8 10 0.00036 26.3 6.5 49 114-165 4-52 (110)
111 3m63_B Ubiquitin domain-contai 75.1 2.3 7.7E-05 29.3 3.0 37 111-148 29-65 (101)
112 1wgh_A Ubiquitin-like 3, HCG-1 74.7 6 0.00021 28.2 5.3 35 109-143 15-49 (116)
113 3kyd_D Small ubiquitin-related 73.6 6.1 0.00021 28.2 5.1 47 108-156 38-84 (115)
114 2gow_A HCG-1 protein, ubiquiti 73.4 5.2 0.00018 28.9 4.7 35 109-143 16-50 (125)
115 3u30_A Ubiquitin, linear DI-ub 73.0 7.3 0.00025 28.9 5.7 39 110-148 96-134 (172)
116 1wxv_A BAG-family molecular ch 72.6 13 0.00043 24.5 6.3 38 110-148 7-49 (92)
117 2kmm_A Guanosine-3',5'-BIS(dip 72.0 4.4 0.00015 25.5 3.7 29 111-141 1-29 (73)
118 2kjr_A CG11242; UBL, ubiquitin 71.7 11 0.00036 25.7 5.8 40 109-148 14-55 (95)
119 1s3s_G P47 protein; AAA ATPase 71.6 9.2 0.00031 27.4 5.8 46 110-157 52-98 (127)
120 2lxa_A Ubiquitin-like protein 71.3 4 0.00014 27.4 3.5 44 111-156 2-48 (87)
121 1rax_A Protein (RA-domain of R 69.9 20 0.00068 25.6 7.0 53 112-164 30-86 (115)
122 2eke_C Ubiquitin-like protein 69.4 7 0.00024 27.4 4.6 45 109-156 30-74 (106)
123 1wia_A Hypothetical ubiquitin- 68.6 9.1 0.00031 25.4 4.9 36 109-144 6-41 (95)
124 3u5c_f 40S ribosomal protein S 68.4 1 3.6E-05 33.7 0.0 38 111-148 1-38 (152)
125 1se9_A Ubiquitin family; ubiqu 67.8 11 0.00039 27.2 5.5 36 109-144 15-51 (126)
126 1wjn_A Tubulin-folding protein 65.6 18 0.00062 24.1 6.0 47 110-158 9-58 (97)
127 2cr5_A Reproduction 8; UBX dom 65.6 17 0.00058 25.2 6.0 46 109-157 22-67 (109)
128 3kh0_A Ralgds, ralgef, RAL gua 65.3 33 0.0011 25.3 7.5 52 113-164 28-83 (140)
129 1oey_A P67-PHOX, neutrophil cy 65.1 18 0.0006 24.3 5.7 37 109-147 4-40 (83)
130 3ai5_A Yeast enhanced green fl 64.8 11 0.00039 31.2 5.7 40 109-148 232-271 (307)
131 4a20_A Ubiquitin-like protein 64.2 13 0.00043 25.5 5.0 41 108-148 17-60 (98)
132 2xzm_9 RPS31E; ribosome, trans 62.9 1.5 5.3E-05 34.1 0.0 38 111-148 1-38 (189)
133 2bps_A YUKD protein; ubiquitin 62.9 17 0.00058 24.2 5.3 49 111-159 5-56 (81)
134 1x1m_A Ubiquitin-like protein 62.5 12 0.0004 25.7 4.6 40 109-148 11-64 (107)
135 4fp5_D LT-IIB, heat-labIle ent 62.1 6.6 0.00023 26.4 3.0 25 150-174 32-56 (98)
136 1qb5_D Protein (heat labIle en 61.7 6.8 0.00023 26.4 3.0 25 150-174 32-56 (99)
137 1rlf_A RLF, RLF-RBD; signal tr 61.3 10 0.00035 25.9 3.9 44 121-164 20-64 (90)
138 1v6e_A Cytoskeleton-associated 60.4 28 0.00097 23.1 6.2 39 110-148 7-46 (95)
139 1ip9_A BEM1 protein; ubiquitin 57.4 20 0.00068 24.2 4.8 45 109-158 11-55 (85)
140 2v1y_A Phosphatidylinositol-4, 55.9 50 0.0017 23.2 7.0 69 100-170 8-84 (108)
141 1q1o_A Cell division control p 55.8 30 0.001 23.9 5.6 54 110-163 5-68 (98)
142 3shq_A UBLCP1; phosphatase, hy 55.1 18 0.00062 30.0 5.3 39 109-148 4-42 (320)
143 2kj6_A Tubulin folding cofacto 55.0 28 0.00094 23.6 5.4 47 110-158 14-62 (97)
144 3ec8_A Putative uncharacterize 54.8 22 0.00074 27.0 5.1 63 98-161 24-91 (166)
145 2l32_A Small archaeal modifier 54.7 11 0.00039 24.4 3.2 43 111-160 1-43 (74)
146 2fnj_B Transcription elongatio 50.4 29 0.001 24.7 5.1 40 115-156 5-45 (118)
147 1ef5_A RGL; RAS-binding domain 50.1 13 0.00046 26.0 3.1 43 122-164 33-76 (103)
148 3h9d_A ATG8, microtubule-assoc 47.9 61 0.0021 23.0 6.5 57 100-157 19-83 (119)
149 3rui_B Autophagy-related prote 45.5 76 0.0026 22.4 6.6 57 100-157 18-82 (118)
150 3rpf_C Molybdopterin convertin 45.2 41 0.0014 21.2 4.8 37 111-148 1-38 (74)
151 1oqy_A HHR23A, UV excision rep 44.3 21 0.00071 30.4 4.0 37 109-145 6-42 (368)
152 3m95_A Autophagy related prote 44.0 70 0.0024 22.9 6.3 57 100-157 24-88 (125)
153 1y8x_B Ubiquitin-activating en 43.5 14 0.00049 25.5 2.4 29 121-149 5-35 (98)
154 2dzj_A Synaptic glycoprotein S 43.2 37 0.0013 22.3 4.5 42 111-152 11-56 (88)
155 4efo_A Serine/threonine-protei 42.8 26 0.00088 24.0 3.6 48 101-149 5-52 (94)
156 3hvz_A Uncharacterized protein 40.0 19 0.00066 23.6 2.5 33 112-146 7-39 (78)
157 2y3a_A Phosphatidylinositol-4, 39.4 96 0.0033 30.2 8.2 78 92-171 26-117 (1092)
158 2jxx_A Nfatc2-interacting prot 36.8 97 0.0033 21.0 6.5 41 108-148 23-64 (97)
159 1wwt_A Threonyl-tRNA synthetas 33.6 26 0.00089 22.8 2.4 30 111-141 10-39 (88)
160 2r2q_A Gamma-aminobutyric acid 33.5 91 0.0031 21.5 5.4 26 123-148 46-71 (110)
161 3tix_A Ubiquitin-like protein 32.1 70 0.0024 25.0 4.9 40 108-148 55-94 (207)
162 3pge_A SUMO-modified prolifera 31.5 68 0.0023 24.8 4.8 40 108-148 27-66 (200)
163 2ylm_A Ubiquitin carboxyl-term 31.1 2E+02 0.0068 25.3 8.4 52 122-175 353-405 (530)
164 3hhm_A Phosphatidylinositol-4, 29.5 97 0.0033 30.2 6.4 66 98-164 29-102 (1091)
165 2zjd_A Microtubule-associated 29.0 1.6E+02 0.0055 21.1 6.8 54 101-157 24-86 (130)
166 2l76_A Nfatc2-interacting prot 27.7 1.5E+02 0.005 20.2 5.6 40 108-148 19-58 (95)
167 3txs_A Terminase DNA packaging 26.7 16 0.00055 25.1 0.4 14 13-26 61-74 (94)
168 2lqo_A Putative glutaredoxin R 26.4 1.4E+02 0.0048 19.6 5.7 30 114-148 58-87 (92)
169 1e7u_A Phosphatidylinositol 3- 25.7 2.2E+02 0.0076 27.2 8.1 52 109-161 77-137 (961)
170 1t0y_A Tubulin folding cofacto 24.8 1.7E+02 0.0059 20.1 9.0 38 111-148 7-45 (122)
171 1eo6_A GATE-16, golgi-associat 24.5 1.8E+02 0.0062 20.2 6.2 27 122-148 46-72 (117)
172 4eut_A Serine/threonine-protei 23.9 2.9E+02 0.0099 22.3 8.9 75 74-149 273-350 (396)
173 4ajy_B Transcription elongatio 23.7 90 0.0031 22.1 3.9 30 119-148 10-39 (118)
174 3fyb_A Protein of unknown func 20.3 25 0.00086 24.5 0.3 31 57-87 20-50 (104)
No 1
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=100.00 E-value=2.2e-41 Score=306.55 Aligned_cols=158 Identities=32% Similarity=0.434 Sum_probs=144.3
Q ss_pred CcccccCCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhccC-CCCCchHHHHHH
Q psy8906 1 MERAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCSS-DCVSEEGKYARF 79 (180)
Q Consensus 1 l~~~l~~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~~-~~~~~~~~~a~~ 79 (180)
++.|+++|+||||||||||||||+||+++|..+.|||+||++|+++|+||. .|.+||..||++++. .++++.++||.+
T Consensus 110 ~~~~~~~~~LrdEiy~Ql~kQ~t~n~~~~s~~~~r~W~Ll~~~~~~f~Ps~-~~~~~l~~~l~~~~~~~~~~~~~~~a~~ 188 (555)
T 3au4_A 110 LQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSR-GILKYLKFHLKRIREQFPGTEMEKYALF 188 (555)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHTSSCSSTTCHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHhccchhhhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 367999999999999999999999999999656899999999999999986 699999999998763 234557899999
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 80 AEKCVLKTQGTRRRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 80 c~~~L~r~~~~g~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
|+++|+|+ |+|+++||..||+|+.+++++.++|+|+||+...+.|+++||++|+++.+|+++||.+..++||||+..
T Consensus 189 c~~~L~rt---g~R~~~Ps~~Ei~a~~~~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~ 265 (555)
T 3au4_A 189 TYESLKKT---KCREFVPSRDEIEALIHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN 265 (555)
T ss_dssp HHHHHTTC---CCCSSCCCHHHHHHHHTTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES
T ss_pred HHHHHHhc---CCCCCCCCHHHHHHHHhCCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe
Confidence 99999995 999999999999999999999999999999999999999999999999999999998657899999986
Q ss_pred cCC
Q psy8906 160 TLG 162 (180)
Q Consensus 160 ~~~ 162 (180)
++.
T Consensus 266 ~~~ 268 (555)
T 3au4_A 266 GHV 268 (555)
T ss_dssp SSC
T ss_pred CCe
Confidence 543
No 2
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=100.00 E-value=8.3e-42 Score=315.12 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=141.5
Q ss_pred cccccCCCChhHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHhcccCCCchHHHHHHHHHhhhccCCCCCchHHHHHHHH
Q psy8906 2 ERAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCSSDCVSEEGKYARFAE 81 (180)
Q Consensus 2 ~~~l~~~~LRDEiy~QliKQtt~Np~~~s~~~~rgW~LLal~~~~f~Ps~k~l~~yL~~fl~~~~~~~~~~~~~~a~~c~ 81 (180)
+.|+.+|+||||||||||||||+||+++| +.|||+||++|+++|+||. .|.+||..||++.. .+||.+|+
T Consensus 165 ~~~~~~~~LrDEiycQl~kQ~t~np~~~s--~~rgW~Ll~l~~~~f~Ps~-~~~~yl~~~l~~~~-------~~~a~~c~ 234 (655)
T 3pvl_A 165 GNGILRPALRDEIYCQISKQLTHNPSKSS--YARGWILVSLCVGCFAPSE-KFVKYLRNFIHGGP-------PGYAPYCE 234 (655)
T ss_dssp HHHHHCGGGHHHHHHHHHHHTSSCCCHHH--HHHHHHHHHHHHHHCCCCT-TTHHHHHHHHHTSC-------TTTHHHHH
T ss_pred HHHhcChhhhhHHHHHHHHHhhcCCChHH--HHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHcCc-------HHHHHHHH
Confidence 57899999999999999999999999877 6999999999999999997 59999999998843 37999999
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 82 KCVLKTQGTRRRQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 82 ~~L~r~~~~g~R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
++|+|+.++|+|+++||..||+|+++++++.++|+|+||+...+.||++||++|+++.+|+++||.+ ..|||||....+
T Consensus 235 ~~L~rt~~~g~R~~~Ps~~Ei~Ai~~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e-~~~FgL~~~~~d 313 (655)
T 3pvl_A 235 ERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD-RFGFSLYIALFD 313 (655)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS-CTTEEEEEEETT
T ss_pred HHHHHhhcCCCCCcCCCHHHHHHHHcCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc-cccceeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 799999998665
Q ss_pred C
Q psy8906 162 G 162 (180)
Q Consensus 162 ~ 162 (180)
+
T Consensus 314 k 314 (655)
T 3pvl_A 314 K 314 (655)
T ss_dssp E
T ss_pred c
Confidence 4
No 3
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=98.61 E-value=6.8e-08 Score=80.86 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=52.2
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
++++.++|+|+||+...+.||+.||++|+++.+|++|||.+ .++|||+...++|..+|
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~~w 72 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE-EDYFGLAIWDNATSKTW 72 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS-GGGEEEEEEEETTEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC-cceeEEEEEcCCCccch
Confidence 36789999999999999999999999999999999999997 89999999988776654
No 4
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=98.61 E-value=7.6e-08 Score=80.75 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCCCHHHHHHhhc--CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 95 WPPSREEILCTIN--RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 95 ~~PS~~Ei~a~~~--~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
..||..|+....+ ++++.++|+++|| ...+.|++.||++|+++.||+++||.+ .++|||+.. .+|..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e-~~~FgL~~~-~~~~~~w 75 (314)
T 1h4r_A 5 AIASRMSFSSLKRKQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE-TWFFGLQYT-IKDTVAW 75 (314)
T ss_dssp ----------------CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC-GGGEEEEEE-ETTEEEE
T ss_pred CCCcccccccccCCCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC-CccceEEEE-eCCcCee
Confidence 4677777754444 4788899999999 677999999999999999999999997 899999998 5665554
No 5
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=98.54 E-value=1.6e-07 Score=77.92 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=49.6
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
++.++|+|+||+ ..+.|++.||++|+++.+|+++||.+ .++|||+....+|..+|
T Consensus 1 ~i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~~w 55 (294)
T 1ef1_A 1 TISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLRE-VWFFGLQYQDTKGFSTW 55 (294)
T ss_dssp CEEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCC-GGGEEEEEEBTTSCEEE
T ss_pred CEEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCCC-cceeEEEEECCCCceee
Confidence 578999999995 56999999999999999999999997 79999999887777665
No 6
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=98.47 E-value=6e-07 Score=64.11 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCcccch
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGALGYAI 175 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~~~~~ 175 (180)
.+++.++||+.||++++|.|++.+||.||++.++.+.++.+ ..+|+||+...+-+..--+-+|.|-+
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~-~~~WaLvE~~P~L~~ER~~EDHE~vv 73 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS-DETWGLVECHPHLALERGLEDHESVV 73 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC-CCCCCEEEEETTTTEEEEECSSSCHH
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC-CCCeEEEEecCCCCcEEeccCchhHH
Confidence 46788999999999999999999999999999999999986 79999999988744443355665543
No 7
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.34 E-value=3.6e-07 Score=78.45 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 93 RQWPPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 93 R~~~PS~~Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
+...+...+.....+++++.++|+||||+...+.||+.||++|+++.+|+++||.+ .++||||....
T Consensus 68 l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e-~~~FgL~~~~~ 134 (371)
T 3ivf_A 68 LDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELM 134 (371)
T ss_dssp GGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC-GGGEEEECCC-
T ss_pred HHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC-ccccEEEEEec
Confidence 44455555555555667889999999999999999999999999999999999997 79999998764
No 8
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=98.33 E-value=9.5e-07 Score=80.41 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIY 166 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~ 166 (180)
++++.++|+|+||+ ..+.|++.||++||+..||..|||.+ .++|||+...++|..+|
T Consensus 2 ~k~i~v~V~llDgt-~e~~vd~~tt~~ell~~V~~~LgL~e-~~~FGL~~~d~~~~~~W 58 (575)
T 2i1j_A 2 PKSMNVRVTTMDAE-LEFAIQQTTTGKQLFDQVVKTIGLRE-VWFFGLQYTDSKGDLTW 58 (575)
T ss_dssp -CEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCC-GGGEEEEEEBTTSCEEE
T ss_pred CceEEEEEEeCCCe-EEEEECCCCCHHHHHHHHHHHcCCCC-ccceeEEEEecCcchhH
Confidence 46899999999995 56999999999999999999999997 79999999877776654
No 9
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=98.09 E-value=4.5e-06 Score=71.94 Aligned_cols=52 Identities=6% Similarity=0.027 Sum_probs=45.8
Q ss_pred eeEEEeeCCC----EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec-CCee
Q psy8906 112 YARFYFMDGS----YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT-LGYT 164 (180)
Q Consensus 112 ~~~i~~~dg~----~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~-~~~~ 164 (180)
.+.|||+||+ ...+.+++.||++|++..+|+++||.. .++|||+.... +|..
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~-~~~FgL~~~~~~~~~~ 65 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKN-VACYGLRLSHLQSEEV 65 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSC-GGGEEEEEEETTSSCE
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCe-EeEEEEEEEEcCCCce
Confidence 4579999998 999999999999999999999999964 89999999765 4443
No 10
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=97.96 E-value=8.7e-06 Score=68.59 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=43.0
Q ss_pred CeeeEEEeeCCCEEEEEecc--cCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCe
Q psy8906 110 PIYARFYFMDGSYHAVEFHP--SATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGY 163 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds--~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~ 163 (180)
-..++|||+||+.+.++|++ +||++|++ +.+||.+. .++||||++.+++.
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~~~~e 57 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICSENLS 57 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEECSSCE
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEECCccc
Confidence 35688999999999999999 99999994 56899863 78999999987754
No 11
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=97.84 E-value=5.8e-05 Score=63.01 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=50.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
+.+.++||+.||++..|.|++.+||.||++.++.+.++.+ ..+|+|||+..+++..
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~-~~~W~L~E~~~~l~lE 85 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGY-SLDWSLVETVSELQME 85 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCC-CTTCEEEEEEGGGTEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCC-CCCeEEEEEcCCccce
Confidence 5678999999999999999999999999999999999876 7999999998876544
No 12
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=97.72 E-value=5.6e-05 Score=58.08 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=45.9
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE-EecCCe
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE-VGTLGY 163 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~-~~~~~~ 163 (180)
..||+|.|+...|.|.|.||+.||++.++++..+.+++..||||+ +..+|.
T Consensus 79 TSfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP~kFALye~vh~~ge 130 (163)
T 3ddc_B 79 TSFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMVVDNPQKFALFKRIHKDGQ 130 (163)
T ss_dssp -CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTCCSCGGGEEEEEEEEETTE
T ss_pred eeEECCCCceEEEEEccCCcHHHHHHHHHHHhcccCChhheEEEEEEccCCc
Confidence 459999999999999999999999999999999998889999999 555554
No 13
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.53 E-value=0.00033 Score=57.13 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=52.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeEEeecCc
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTIYEVGAL 171 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~~~~~~~ 171 (180)
+.+.++||+.||+++.+.|++.+|+.||++.|+.+.++.. ..+|+||++..++...--+-+|
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~-~~~~~l~E~~~~~~ler~l~d~ 94 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDC-NVDWCLYEIYPELQIERVFEDH 94 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCC-CTTEEEEEEETTTTEEEECCTT
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCC-CCCeEEEEeccccccceecccc
Confidence 4677999999999999999999999999999999999986 5789999998776544333333
No 14
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.41 E-value=0.00044 Score=51.29 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=43.0
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
.++|.+|||+...+.||-+.||.+++..||.++||.+ .++|+|.....
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n-~~ey~L~~~~~ 60 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELM 60 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC-CSSEEEEEECC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC-ccccccccccc
Confidence 3679999999999999999999999999999999996 68899976543
No 15
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.00046 Score=56.78 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCee
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYT 164 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~ 164 (180)
.+..++||..||+++.|.|++.+||.||+..++.+-++.+ ...|+|||+..+.+.
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~-~~~W~l~E~~~~l~l 61 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVD-DNSWTLVEHHPHLGL 61 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC--------EEEEEEETTTTE
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCC-CCCEEEEEECCCccc
Confidence 4557899999999999999999999999999999888765 699999999877654
No 16
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=57.43 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=47.8
Q ss_pred HHHHhhcCCCeeeEEEe------eCCCEEEEEecccCCHHHHHHHHH--HHcCCCC-CCCceEEEEEe-cCCeeEE
Q psy8906 101 EILCTINRRPIYARFYF------MDGSYHAVEFHPSATARDAVALIR--AKLGLRD-GALGYAIYEVG-TLGYTIY 166 (180)
Q Consensus 101 Ei~a~~~~~~i~~~i~~------~dg~~~~v~vds~tt~~ev~~~i~--~~lgl~~-~~~gfaL~~~~-~~~~~~~ 166 (180)
|++++..+ .++|++ |||+++.|.+|++|||+||+..+| .++|+.. ...+|||+... .++..+|
T Consensus 15 ~~~~~~~~---~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~w 87 (392)
T 4eku_A 15 DVEKEDVR---ILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHW 87 (392)
T ss_dssp CCCGGGEE---EEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEE
T ss_pred eeecceee---eEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEE
Confidence 55555433 345677 999999999999999999999999 6888742 37999999864 4444443
No 17
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.62 E-value=0.0026 Score=44.26 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=41.0
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
+.-|.+.|..+||....|+|.+.++..||+++.|++.|+. .+.|.|.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lk 53 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLK 53 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEE
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEE
Confidence 4556889999999999999999999999999999999996 4788885
No 18
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=96.45 E-value=0.0052 Score=43.84 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=49.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
..+.++||++|.++..+.+....|++|++..++++++..+ ++.-|.+...+|..+
T Consensus 8 D~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~--e~l~Lv~v~ssGEk~ 62 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAE--EDLALVAITFSGEKH 62 (104)
T ss_dssp SCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCG--GGEEEEEECSSCCCC
T ss_pred CceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCc--cceEEEEEccCCcEe
Confidence 4577899999999999999999999999999999999863 689999998888765
No 19
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=96.36 E-value=0.0053 Score=56.10 Aligned_cols=53 Identities=6% Similarity=0.045 Sum_probs=45.9
Q ss_pred eEEEeeCCC----EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec-CCeeEE
Q psy8906 113 ARFYFMDGS----YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT-LGYTIY 166 (180)
Q Consensus 113 ~~i~~~dg~----~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~-~~~~~~ 166 (180)
+.||++||. +..|+++..||++|++..+|+++|+.. .+-|||..... .|..+|
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~-~~~fgL~~~~~~~~~~~w 67 (656)
T 2j0j_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKN-VACYGLRLSHLQSEEVHW 67 (656)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSC-GGGEEEEEEESSSCCEEE
T ss_pred eEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcce-eeeEEEEEeecccCceee
Confidence 468998988 999999999999999999999999975 79999997655 565554
No 20
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=96.26 E-value=0.0086 Score=43.74 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=50.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC----CCceEEEEEecCCeeE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG----ALGYAIYEVGTLGYTI 165 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~----~~gfaL~~~~~~~~~~ 165 (180)
..+.++||++|.++..+.+...+||+|++..++.+++..+. .++.-|.++...|..+
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~ 68 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKV 68 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEe
Confidence 46778999999999999999999999999999999998652 3489999998888776
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=95.14 E-value=0.067 Score=35.55 Aligned_cols=41 Identities=10% Similarity=0.217 Sum_probs=37.8
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..+|.+.|..++|....+.|++.+|+.++-+.|+.+.|++.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 56788899999999999999999999999999999999974
No 22
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=94.84 E-value=0.095 Score=37.80 Aligned_cols=48 Identities=29% Similarity=0.283 Sum_probs=40.7
Q ss_pred eeEEE----eeCCCEEEEEecccCCHHHHHHHHHHHcCCCC-CCCceEEEEEe
Q psy8906 112 YARFY----FMDGSYHAVEFHPSATARDAVALIRAKLGLRD-GALGYAIYEVG 159 (180)
Q Consensus 112 ~~~i~----~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~-~~~gfaL~~~~ 159 (180)
.++|| .++-.++.|-+...||+.||+.+++++.||.. ..+.|.|+++.
T Consensus 11 ~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 11 TLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp EEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred EEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 45555 35567899999999999999999999999985 37889999986
No 23
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=94.42 E-value=0.12 Score=34.72 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=42.2
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
.+++|+||+..-.|+|.+-.|+.|++..+++..||. .+..++|...
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~--pe~C~V~~~~ 48 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ--PECCAVFRLL 48 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC--GGGEEEEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCC--HHHeEEEEec
Confidence 578999999999999999999999999999999997 5899999664
No 24
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=94.34 E-value=0.15 Score=35.55 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=43.3
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
...+++|+||+..-.|.|.+-.|+.|++..+++..||. .+..++|...
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~--pe~C~Vy~~~ 64 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLI--PECCAVYRIQ 64 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCC--GGGEEEEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC--HHHcEEEEcC
Confidence 34789999999999999999999999999999999997 5889999664
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=94.12 E-value=0.1 Score=34.25 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|..++|....+.|++.+|+.|+-+.|+++.|++. +..-|+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~qrL~ 47 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 47 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG--GGCEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh--HHEEEE
Confidence 4678889999999999999999999999999999999974 334444
No 26
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=94.12 E-value=0.18 Score=36.48 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCeeeEEE--eeCCCEEEEEecccCCHHHHHHHHHHHcCCC------CCCCceEEEEEec
Q psy8906 109 RPIYARFY--FMDGSYHAVEFHPSATARDAVALIRAKLGLR------DGALGYAIYEVGT 160 (180)
Q Consensus 109 ~~i~~~i~--~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~------~~~~gfaL~~~~~ 160 (180)
....+.|| -||..+..+.|+..||++||+.+++.++|.. ...+.|-|.++..
T Consensus 6 ~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~ 65 (117)
T 2c5l_C 6 ESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVV 65 (117)
T ss_dssp CEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEE
T ss_pred ceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEc
Confidence 34456677 5788899999999999999999999999975 3479999998874
No 27
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=94.07 E-value=0.14 Score=35.10 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=42.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
-.+++|+||+..-.|+|.+-.|+.|++..+++..||. .+..++|...
T Consensus 8 ~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~--pe~C~Vy~~~ 54 (86)
T 1wxm_A 8 GTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN--QDCCVVYRLI 54 (86)
T ss_dssp SEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC--SSSEEEEEES
T ss_pred ceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC--HHHeEEEEcC
Confidence 3678999999999999999999999999999999997 4889998663
No 28
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=93.90 E-value=0.054 Score=37.89 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
..|.++|+.-+.....-.|+..||++||+..+|+..|- ...|.|.+.-.+
T Consensus 6 ~~mel~Vwv~g~er~VsGvT~~TTC~DVV~aL~~~~G~---~~~y~LvE~wRg 55 (95)
T 2cs4_A 6 SGMELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGR---TGRYTLIEKWRD 55 (95)
T ss_dssp CCBCCCEEETTEEECCSSBCSSSCHHHHHHHHHHHHSC---CSEEEEEEEETT
T ss_pred CCCEEEEEECCceeEEECCCCCCcHHHHHHHHHhccCC---CccEEEEEecCC
Confidence 45678888733344566899999999999999999885 478999998655
No 29
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=93.73 E-value=0.024 Score=38.14 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
.+|.++|.-++|.. .|.+++.+|++|+.+.|.+++++. .++|+|+....
T Consensus 3 ~~m~lRvrs~~G~~-Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~ 51 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK-RITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRN 51 (80)
T ss_dssp CCCCCEEECSSEEE-ECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCC
T ss_pred CcEEEEEECCCCCE-EEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCC
Confidence 35788999999974 477999999999999999999986 37777776544
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=93.59 E-value=0.13 Score=32.80 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=37.6
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.|..++|....+.|++.+|++++-+.|.++.|++. +..-|+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~--~~q~L~~ 45 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLIF 45 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG--GGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH--HHeEEEE
Confidence 45678888999999999999999999999999999974 4555543
No 31
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.58 E-value=0.094 Score=44.45 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=42.7
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCC---CCCCCceEEEEEec
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGL---RDGALGYAIYEVGT 160 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl---~~~~~gfaL~~~~~ 160 (180)
.++++|.++ +.++.+.+++.||+.|++..|.+++.- .+ .+.||||...+
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~-~~~y~l~~~~~ 54 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGP-PNDFGLFLSDD 54 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSC-GGGEEEEECCS
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCC-HHHCeEeccCC
Confidence 577889998 889999999999999999999999874 33 79999999544
No 32
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=93.51 E-value=0.17 Score=32.97 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.+|.+.|..++|....+.|++.+|++++-+.|..+.|++. +..-|+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~--~~qrL~ 48 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD--DLFWLT 48 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG--GGEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH--HHEEEE
Confidence 4688889999999999999999999999999999999974 444444
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.49 E-value=0.12 Score=35.61 Aligned_cols=52 Identities=8% Similarity=-0.093 Sum_probs=40.7
Q ss_pred HhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 104 CTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 104 a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.......|.+.|...+|....+.|++.+|++++-+.++.+.|+.. +..-|+.
T Consensus 15 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~--~~qrLif 66 (97)
T 1wyw_B 15 DKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM--NSLRFLF 66 (97)
T ss_dssp ----CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG--GGEEEEE
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh--hhEEEEE
Confidence 333455688888889999999999999999999999999999974 4445543
No 34
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.40 E-value=0.11 Score=34.19 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
..|.+.|..++|....+.|++.+|++++-+.|+++.|++. +..-|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~--~~qrL~~ 48 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP--DQQRLIF 48 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG--GGEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH--HHEEEEE
Confidence 3577888889999999999999999999999999999974 4445543
No 35
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=93.37 E-value=0.14 Score=32.72 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=36.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.|++.+|++++-+.|.++.|++. +..-|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~--~~q~L~ 44 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP--QQQRLI 44 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh--HHEEEE
Confidence 45677788999999999999999999999999999974 444454
No 36
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=93.05 E-value=0.24 Score=45.74 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=47.0
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
.+.++||.+|.++..+.+...+|+.||+..+++++|+. +.|+|.++...|..+
T Consensus 352 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~v~~~~~~~ 404 (694)
T 3cf6_E 352 EVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSG---EGLIIVKMNSGGEKV 404 (694)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCC---SCEEEEEECTTSCEE
T ss_pred ceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCc---ccceEEEEeecCccc
Confidence 34578999999999999999999999999999999985 469999998777665
No 37
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=92.85 E-value=0.12 Score=35.43 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=39.2
Q ss_pred CCCeeeEEEeeCCCEEEE--EecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecC
Q psy8906 108 RRPIYARFYFMDGSYHAV--EFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTL 161 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v--~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~ 161 (180)
.-+|.++|++-|...... .|...||++||+ .+|+..|- ..|.|.+.-.+
T Consensus 4 ~~~mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~----~~~~LvE~WR~ 54 (86)
T 2uwq_A 4 MMPMFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE----SDCHLAEVWCG 54 (86)
T ss_dssp CSSEEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS----SSCEEEEEETT
T ss_pred ccceEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC----CcEEEEeeeCC
Confidence 357889999887765544 999999999999 88987664 67899887655
No 38
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=92.71 E-value=0.31 Score=34.06 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=43.8
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
+.-.+++|+||+..-.|.|-+-.|+.|++..+++..||. .+.-++|...
T Consensus 12 ~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~--pe~C~Vy~~~ 60 (96)
T 3ny5_A 12 QKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLI--PECCAVYRIQ 60 (96)
T ss_dssp SSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC--GGGEEEEECC
T ss_pred hhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCC--hHHeEEEEcc
Confidence 445689999999999999999999999999999999997 4888988764
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.59 E-value=0.32 Score=31.50 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|..++|....+.|++.+|++++-+.|.++.|+..
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 45 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV 45 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4577888888999899999999999999999999999974
No 40
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=92.34 E-value=0.3 Score=34.69 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=42.2
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEe
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVG 159 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~ 159 (180)
.+++|+||+..-.|+|.+-.|+.|++..+++..||. .+..++|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~--pe~C~Vy~~~ 65 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ--PECCAVFRLL 65 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCC--TTTEEEEECC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC--HHHceeEEcc
Confidence 589999999999999999999999999999999997 4889999663
No 41
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=92.34 E-value=0.32 Score=32.71 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=37.1
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|...+|....+.|++.+|++|+-+.|.++.|+..
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 45677888889999999999999999999999999999974
No 42
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=92.13 E-value=0.32 Score=32.33 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=37.2
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|..++|....+.|++.+|++++-+.|..+.|++.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 45688889999999999999999999999999999999974
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=92.12 E-value=0.26 Score=33.58 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=36.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.|++.+|++|+-+.|.++.|+.. +..-|+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~--~~qrL~ 44 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 44 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCG--GGEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh--hhEEEE
Confidence 45678888999999999999999999999999999974 344443
No 44
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=92.09 E-value=0.26 Score=32.02 Aligned_cols=45 Identities=9% Similarity=-0.043 Sum_probs=38.2
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.|.+.|...+|....+.|++.+|++++-+.++++.|++. +..-|+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~--~~qrL~ 47 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM--NSLRFL 47 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG--GGEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc--ccEEEE
Confidence 467778888999999999999999999999999999974 444443
No 45
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.28 Score=33.56 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=36.6
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|...+|....+.|++.+|+.++-+.|.++.|+..
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 45788899999999999999999999999999999999974
No 46
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=91.94 E-value=0.28 Score=33.09 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=37.3
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|...+|....+.|++.+|+.++-+.|.++.|+.. +..-|+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~--~~qrL~ 45 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 45 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh--hHEEEE
Confidence 56778889999999999999999999999999999974 444444
No 47
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.91 E-value=0.41 Score=31.60 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=38.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|..++|....+.|++.+|++|+-+.|.++.|+.. +..-|+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~--~~qrL~ 51 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK--KQQQLE 51 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT--TTEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh--HHEEEE
Confidence 4677888888999999999999999999999999999974 344443
No 48
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=91.86 E-value=0.35 Score=32.23 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=36.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|..++|....+.|++.+|+.++-+.|..+.|+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 3567788889999999999999999999999999999974
No 49
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.84 E-value=0.5 Score=33.09 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=42.5
Q ss_pred CCCCHHHHHHhhcCCCeeeEEEee---CCCEEEEEecc-cCCHHHHHHHHHHHcCCCC
Q psy8906 95 WPPSREEILCTINRRPIYARFYFM---DGSYHAVEFHP-SATARDAVALIRAKLGLRD 148 (180)
Q Consensus 95 ~~PS~~Ei~a~~~~~~i~~~i~~~---dg~~~~v~vds-~tt~~ev~~~i~~~lgl~~ 148 (180)
..| ..++ ......+|.+.|..+ +|....+.|++ .+|+.++-+.|....|+..
T Consensus 14 l~~-e~~~-l~~~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~ 69 (111)
T 1we6_A 14 LVP-EDQF-LAQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA 69 (111)
T ss_dssp CCC-HHHH-HHHCCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCT
T ss_pred cCc-HHHH-HHhCCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCH
Confidence 355 3344 445567899999998 88889999998 9999999999999999974
No 50
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=91.64 E-value=0.33 Score=32.56 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=34.2
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|...+|....+.|++.+|++++-+.|..+.|++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 45677888999999999999999999999999999974
No 51
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=90.87 E-value=0.27 Score=32.87 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=32.3
Q ss_pred eeeEEEeeCCCEEEEE-ecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVE-FHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~-vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.++|..++|.. .+. +++.+|++|+.+.|.++.|+..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~ 38 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAP 38 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCT
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCc
Confidence 467899999965 477 9999999999999999999963
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=90.73 E-value=0.48 Score=32.89 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=34.8
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
-|.+-|..+.|....+++++..|+.++-+.|+.+.|++.
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 355667788999999999999999999999999999974
No 53
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=90.70 E-value=0.57 Score=31.26 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=35.4
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.|.+.|..++|....+.|++.+|++++-+.|..+.|++.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 42 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 577788888999999999999999999999999999974
No 54
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=90.67 E-value=0.73 Score=32.45 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCCHHHHHHhhcCCCeeeEEEeeC----------CCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 96 PPSREEILCTINRRPIYARFYFMD----------GSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 96 ~PS~~Ei~a~~~~~~i~~~i~~~d----------g~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.| ..|+.+ ....++.+.|.+|+ |....+.|++.+|+.++-+.|....|+..
T Consensus 13 ~~-e~~~l~-~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (115)
T 1we7_A 13 MP-EEEFLR-RNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA 73 (115)
T ss_dssp CC-HHHHHH-HCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT
T ss_pred CC-HHHHHH-hCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh
Confidence 45 444444 45578999999985 56789999999999999999999999974
No 55
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.94 E-value=0.7 Score=30.80 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=39.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|...+|....+.|++..|++++-+.|..+.|++. +.--|+
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~--~~QrLi 54 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPV--SKQTLI 54 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCG--GGEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcCh--HHEEEE
Confidence 4577888889999999999999999999999999999974 444444
No 56
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.91 E-value=0.64 Score=32.57 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred eeEEEeeC----CCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 112 YARFYFMD----GSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 112 ~~~i~~~d----g~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.+.|++++ |....++|++..|++++-+.|..+.|++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~ 57 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE 57 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCS
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCH
Confidence 46799999 77899999999999999999999999974
No 57
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=89.81 E-value=0.74 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=35.1
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|.. +|....+.|++.+|++++-+.|....|+.. +..-|+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~--~~qrL~ 47 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV--ANQRLI 47 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCH--HHEEEE
Confidence 4555666 888899999999999999999999999974 444454
No 58
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=89.78 E-value=0.6 Score=31.20 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+-|.+.|...+|....+.|++.+|++++-+.|.++.|++.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP 47 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 4567788889999999999999999999999999999974
No 59
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=89.70 E-value=0.69 Score=32.48 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=38.5
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.|.+.|..++|....+.|++.+|++++-+.|+.+.|++. ...-|+
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~--~~QrLi 79 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 79 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh--HHEEEE
Confidence 577888889999999999999999999999999999974 444444
No 60
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.65 E-value=0.57 Score=33.51 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=41.9
Q ss_pred CCeeeEEE--eeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEE
Q psy8906 109 RPIYARFY--FMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEV 158 (180)
Q Consensus 109 ~~i~~~i~--~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~ 158 (180)
....+.|| .+|.-+-.+.+++.|||+||+.++..+.+.... ...|-|.+.
T Consensus 8 ~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~EE 60 (110)
T 2bye_A 8 QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEE 60 (110)
T ss_dssp CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEE
T ss_pred cEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEEE
Confidence 44556677 567778999999999999999999999988743 799999987
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=89.56 E-value=0.75 Score=32.20 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|..++|....+.|++.+|++++-+.|.++.|+..
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc
Confidence 3577888888999999999999999999999999999974
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=89.36 E-value=0.64 Score=34.89 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=37.0
Q ss_pred HhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 104 CTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 104 a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.-.....|.+.|...+|....+.|++.+|+.++-+.|..+.|+..
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 334456788899999999999999999999999999999999864
No 63
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.17 E-value=1 Score=29.79 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCeeeEEEeeCC-CEEEE-EecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDG-SYHAV-EFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg-~~~~v-~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|..++| ....+ .|++.+|++++-+.|..+.|+.. +..-|+
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~--~~qrL~ 53 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP--ECQRLF 53 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT--TTEEEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh--hhEEEE
Confidence 467888888899 68999 59999999999999999999974 344443
No 64
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=88.91 E-value=0.88 Score=29.22 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=36.7
Q ss_pred CeeeEEEeeCCCEE-EEE-ecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 110 PIYARFYFMDGSYH-AVE-FHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 110 ~i~~~i~~~dg~~~-~v~-vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.|.+.|...+|... .+. |++.+|++++-+.|..+.|+.. +..-|+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~--~~qrL~ 48 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP--GLQRLF 48 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh--hhEEEE
Confidence 46777888889874 899 9999999999999999999974 444444
No 65
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.49 E-value=1 Score=31.25 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=37.3
Q ss_pred cCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 107 NRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 107 ~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
....|.+.|...+|....+.|++.+|++++-+.|..+.|+..
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 61 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEP 61 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCS
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCc
Confidence 346688889888999999999999999999999999999974
No 66
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=88.34 E-value=1.1 Score=30.79 Aligned_cols=43 Identities=2% Similarity=-0.072 Sum_probs=35.3
Q ss_pred hhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 105 TINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 105 ~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.....|.+.|... |....+.|++.+|++++-+.|....|+..
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 62 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT 62 (101)
T ss_dssp ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG
T ss_pred CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 33446788888877 77889999999999999999999999974
No 67
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.09 E-value=1.2 Score=31.05 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCeeeEEEeeCCCEEEEEec-ccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFH-PSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vd-s~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.++|.-++|.. .+.|+ +..|++|+-+.|..+.|+..
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 34788999999986 78999 99999999999999999864
No 68
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.78 E-value=0.67 Score=32.67 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+..|.+.|...+|....+.|++..|++|+-+.|..+.|+..
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 46688999999999999999999999999999999998753
No 69
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=87.42 E-value=1.5 Score=28.20 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|.-.+|....+.|...|+.+.+.+..|++.|+..
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 56778888999999999999999999999999999975
No 70
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=87.37 E-value=2 Score=30.18 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=39.6
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
...++|.||||+...-.+.+..|++||-+.|....+.. ...|.|..
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t 58 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLAT 58 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEc
Confidence 46688999999999999999999999999999987764 46788765
No 71
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=87.28 E-value=2.5 Score=27.79 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCeeeEEEeeCCC-EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGS-YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|.-.+|. ...+.|...|+.+.+.+..|++.|+..
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~ 46 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG 46 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 35678888889996 899999999999999999999999985
No 72
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.17 E-value=3.5 Score=28.16 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=44.1
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCee
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYT 164 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~ 164 (180)
..+.+++++-| ....+.+++..+..++.+.+...+++.. .+.|.+.-...+|.-
T Consensus 5 ~~vkvK~~~~g-di~~~~v~~~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~ 58 (89)
T 1vd2_A 5 SQVRVKAYYRG-DIMITHFEPSISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDP 58 (89)
T ss_dssp SCEEEEEESSS-CEEEEEECTTCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCC
T ss_pred CeEEEEEEeCC-eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCc
Confidence 45778888664 5789999999999999999999999975 588999877655543
No 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=87.12 E-value=1.6 Score=28.42 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=36.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHH---cCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAK---LGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~---lgl~~~~~gfaL~ 156 (180)
..|.+.|...+|....+.|++.+|++++-+.|..+ -|+.. +..-|+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~--~~qrLi 52 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV--AGQKLI 52 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG--GGEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCH--HHeEEE
Confidence 35677788889999999999999999999999998 46653 444443
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=86.79 E-value=1 Score=32.47 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=33.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++.+|++|+-+.|..+.|++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 45677788999999999999999999999999999864
No 75
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=85.88 E-value=1.5 Score=29.88 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|.-.+|....+.|...|+.+.+.+..|++.|+.. +...+.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~--~~~rf~ 49 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM--RQIRFR 49 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS--TTEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc--ccEEEE
Confidence 4677888888999999999999999999999999999974 444443
No 76
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.85 E-value=1.4 Score=30.78 Aligned_cols=38 Identities=26% Similarity=0.101 Sum_probs=34.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..+.|....++|++..|++++-+.|..+-|++.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~ 66 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRW 66 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 77788888899999999999999999999999999974
No 77
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.82 E-value=0.87 Score=31.66 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=33.6
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|...+|....+.|++..|+.++-+.|..+.|+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 39 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEE 39 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCG
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 45677888999999999999999999999999999864
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.73 E-value=2.3 Score=29.10 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=33.6
Q ss_pred CeeeEEEeeCC----CEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDG----SYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg----~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.|.+.|..++| ....++|+..+|++|+-+.|..+.|+..
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 47788888754 6788999999999999999999999974
No 79
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.28 E-value=2 Score=28.99 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=32.2
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHH---cCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAK---LGLR 147 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~---lgl~ 147 (180)
|.+.|..++|....+.|++.+|++|+-+.|... -|+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip 40 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP 40 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC
Confidence 456777888999999999999999999999999 4665
No 80
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.04 E-value=3.8 Score=28.59 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=37.4
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|.-.+|....+.|...|+.+.+.+..|++.|+..
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 45788888888999999999999999999999999999975
No 81
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=84.41 E-value=0.21 Score=32.15 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=32.8
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++.+|++++-+.|.+..|++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 38 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPA 38 (76)
Confidence 34556678898889999999999999999999999874
No 82
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=83.86 E-value=1.9 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=34.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|...+|....+.|++..|++|+-+.|....|++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 40 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA 40 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 56778888999999999999999999999999999975
No 83
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=83.73 E-value=2.7 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|..++| ...+.|++.+|++++-+.|..+.|++.
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~ 52 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPI 52 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCT
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 456777888888 788999999999999999999999974
No 84
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=83.59 E-value=2.6 Score=30.20 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=37.9
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
.+.+.|..++|....+.|++.+|++++-+.|+.+.|++. +..-|+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~qrL~ 120 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI 120 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh--hhEEEE
Confidence 466778888999999999999999999999999999974 444454
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=83.10 E-value=2.4 Score=31.03 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=38.6
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|..++|....+.|++..|++++-+.|..+.|++. +..-|+
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~--~~q~L~ 125 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD--DLFWLT 125 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG--GGEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH--HHEEEE
Confidence 4567778888999999999999999999999999999974 444454
No 86
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.03 E-value=3 Score=27.83 Aligned_cols=40 Identities=5% Similarity=-0.182 Sum_probs=33.6
Q ss_pred CCeeeEEEeeCCC--EEEEEecccCCHHHHHHHHHHHc--CCCC
Q psy8906 109 RPIYARFYFMDGS--YHAVEFHPSATARDAVALIRAKL--GLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~--~~~v~vds~tt~~ev~~~i~~~l--gl~~ 148 (180)
..|.+.|..++|. ...+.+++.+|+.|+-+.|..+. |+..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~ 49 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRP 49 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCT
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCCh
Confidence 4577888889998 56666779999999999999998 8864
No 87
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.89 E-value=2.7 Score=28.19 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=34.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
..|.+.|... |....+.|++.+|++++-+.|..+.|+...
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 3466777777 888899999999999999999999999753
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=82.75 E-value=2 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|.-.+|....+.|.+.++.+.+.+..|++.|+..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 4577788888999999999999999999999999999974
No 89
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=82.70 E-value=2.2 Score=29.97 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=35.0
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...+.|..++|....+.|++.+|++++-+.|..+.|++.
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 47 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 456678889999999999999999999999999999874
No 90
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=82.70 E-value=2.1 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=34.5
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++..|++++-+.|..+.|+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 45678889999999999999999999999999999874
No 91
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=82.49 E-value=4.5 Score=26.67 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
-..++|.+|||+...-.+.+..|+++|.+.+.. .|.. ...|.|..
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t 51 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLS 51 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEe
Confidence 345789999999999999999999999999987 4542 57888863
No 92
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.35 E-value=3.6 Score=27.80 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.|.+.|. .+|....+.|++.+|+.|+-+.|..+.|+..
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4667776 4788889999999999999999999999874
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=82.22 E-value=4 Score=28.83 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|.-.+|....+.|...|+.+.+.+..|++.|+..
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~ 64 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR 64 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 46788889889999999999999999999999999999975
No 94
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=82.05 E-value=2.2 Score=33.07 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=34.5
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++.+|+.++-+.|..+.|++.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~ 143 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 143 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH
Confidence 56678888999999999999999999999999999974
No 95
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=82.00 E-value=2.4 Score=29.87 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=36.4
Q ss_pred CCeeeEEEeeCC----CEEEEEecccCCHHHHHHHHHHHcCCCCCCC
Q psy8906 109 RPIYARFYFMDG----SYHAVEFHPSATARDAVALIRAKLGLRDGAL 151 (180)
Q Consensus 109 ~~i~~~i~~~dg----~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~ 151 (180)
.+|.+.|++-|- ....+.|++.+|++++-+.|.++.|++...+
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 578888888874 4678899999999999999999999986433
No 96
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=81.23 E-value=3.6 Score=29.59 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
....++|.||||....-.+.+..|+.+|...|... |.. ...|.|+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t 87 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLT 87 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEec
Confidence 44667899999999999999999999999999876 553 46788874
No 97
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=81.15 E-value=3.1 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=33.4
Q ss_pred CeeeEEEeeCCCEEEE-EecccCCHHHHHHHHHHHcCCCCC
Q psy8906 110 PIYARFYFMDGSYHAV-EFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v-~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
.|.+.|.. +|....+ .|++..|+.|+-+.|..+-|+...
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~ 46 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPE 46 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTT
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHH
Confidence 46677775 7888889 999999999999999999999753
No 98
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=80.78 E-value=2.6 Score=28.84 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|...+|. ..+.|++.+|++++-+.|.++.|+..
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~ 59 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP 59 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3577788888887 58999999999999999999999974
No 99
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.66 E-value=3.2 Score=28.47 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=34.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|...+|. ..+.|+..+|+.++-+.|..+.|+..
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~ 54 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP 54 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCT
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 4577888888886 58999999999999999999999974
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=79.65 E-value=4 Score=27.68 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=36.9
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.+.|.-.+|....+.|...|+.+.+.+..|++.|+..
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 45677888888999999999999999999999999999974
No 101
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.37 E-value=3.2 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCeeeEEE-eeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFY-FMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~-~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..+.+.|. .++|....+.+++.+|++|+-+.++.+.+++.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~ 54 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPH 54 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCT
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCCh
Confidence 45677776 77888999999999999999999999999975
No 102
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.15 E-value=4.5 Score=28.91 Aligned_cols=39 Identities=5% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|... |....+.|++.+|+.++-+.|..+.|+..
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 69 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQT 69 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCS
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCc
Confidence 4677778777 88889999999999999999999999974
No 103
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=78.51 E-value=9 Score=26.08 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCC-EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCee
Q psy8906 119 DGS-YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYT 164 (180)
Q Consensus 119 dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~ 164 (180)
+|. ++.|.+.+.-.+..|+.+...+.+|... ++.|.|+....+|..
T Consensus 14 ~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kE 61 (87)
T 1lfd_A 14 NGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHK 61 (87)
T ss_dssp SSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSSSCE
T ss_pred CCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCE
Confidence 443 8999999999999999999999999965 899999999865543
No 104
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=77.74 E-value=5.1 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=30.1
Q ss_pred EEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 115 FYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 115 i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.-.+|....+.|++.+|++|+-+.|....|+..
T Consensus 16 ~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 49 (85)
T 2kd0_A 16 TVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLP 49 (85)
T ss_dssp EEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCT
T ss_pred EEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 4446888889999999999999999999999974
No 105
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=77.33 E-value=4.6 Score=27.78 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=32.7
Q ss_pred CCeeeEEEeeCCC--EEEEEecccCCHHHHHHHHHHHc-CCC
Q psy8906 109 RPIYARFYFMDGS--YHAVEFHPSATARDAVALIRAKL-GLR 147 (180)
Q Consensus 109 ~~i~~~i~~~dg~--~~~v~vds~tt~~ev~~~i~~~l-gl~ 147 (180)
.+|.+.|..++|. ...+.|++.+|++++-+.|..++ |..
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p 63 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP 63 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC
Confidence 5688899999998 56888999999999999999986 443
No 106
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=77.14 E-value=4.2 Score=27.26 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=32.9
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|.+.|.. |....+.|++.+|++++-+.|..+.|+.. +..-|+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~--~~qrLi 61 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAP--EDQVVL 61 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCG--GGCEEE
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcCh--hHEEEE
Confidence 4444444 88899999999999999999999999974 344443
No 107
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=76.59 E-value=0.51 Score=33.99 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++.+|++++-+.|....|++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (128)
T ss_dssp --------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcCh
Confidence 34566778899999999999999999999999999874
No 108
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.14 E-value=7.9 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=32.5
Q ss_pred CeeeEEEeeCCCEE-EEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 110 PIYARFYFMDGSYH-AVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 110 ~i~~~i~~~dg~~~-~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
.|.+.|.. +|... .+.|++..|+.|+-+.|...-|+...
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45666663 67778 69999999999999999999999753
No 109
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.80 E-value=10 Score=26.16 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=30.8
Q ss_pred eEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCC
Q psy8906 113 ARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGA 150 (180)
Q Consensus 113 ~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~ 150 (180)
+.+. ..|....+.|++..|++++-++|..+-|+....
T Consensus 12 ~~vk-~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 12 FRVE-YRDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp EEEE-CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred EEEE-eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 3344 467778999999999999999999999998643
No 110
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=75.76 E-value=10 Score=26.33 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.6
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEecCCeeE
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGTLGYTI 165 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~~~~~~ 165 (180)
++---+|.++.|.+...-+ +......++.||.+ ++.|.++++......+
T Consensus 4 rFIacnGQTRaVq~~~~y~--~~L~~ALkKF~led-pskw~Vcvtqssr~~~ 52 (110)
T 1k8r_B 4 RFIACNGQTRAVQSRGDYQ--KTLAIALKKFSLED-ASKFIVCVSQSSRIKL 52 (110)
T ss_dssp EEECSTTCEEEEECCSCHH--HHHHHHHHHHTCCC-TTSEEEEEECSSSEEE
T ss_pred EEeecCCceEEeeehhhHH--HHHHHHHHHcCCCC-hhHeEEEEecCceEEE
Confidence 4444578888877666554 88889999999976 7999999997765554
No 111
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=75.07 E-value=2.3 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=31.7
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.+.|.. +|....+.|++.+|++++-+.|..+.|+..
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 65 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV 65 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCS
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcCh
Confidence 4455554 888889999999999999999999999975
No 112
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.66 E-value=6 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHH
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAK 143 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~ 143 (180)
..|.+.|...+|....+.|++..|+++|-+.|..+
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 45788888899999999999999999999999984
No 113
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=73.58 E-value=6.1 Score=28.22 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=39.4
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
...|.+.|.-.||....+.|...|+.+-+....|++.|+.. ..+.++
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~--~~irFl 84 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM--NSLRFL 84 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCT--TSEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCCh--hhEEEE
Confidence 35778888888999999999999999999999999999974 444443
No 114
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=73.35 E-value=5.2 Score=28.86 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHH
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAK 143 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~ 143 (180)
..|.+.|..++|....+.|++++|+++|-+.|...
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 35778888899999999999999999999999984
No 115
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=73.03 E-value=7.3 Score=28.88 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=34.2
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.+.+.|...+|....+.|++..|+.++-+.|..+.|+..
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 134 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 134 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc
Confidence 455567778999999999999999999999999999974
No 116
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.63 E-value=13 Score=24.52 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=31.7
Q ss_pred CeeeEEEeeCCCEEEEEeccc-----CCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGSYHAVEFHPS-----ATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~-----tt~~ev~~~i~~~lgl~~ 148 (180)
.|.+.|.. .|....+.|++. +|+.|+-+.|....|+..
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~ 49 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ 49 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH
Confidence 46667766 567778999995 999999999999999974
No 117
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=71.95 E-value=4.4 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.6
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHH
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIR 141 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~ 141 (180)
|.+.|++|||.. ..+...+|+.|++..+-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLH 29 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHh
Confidence 457788999976 45667899999998763
No 118
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=71.69 E-value=11 Score=25.66 Aligned_cols=40 Identities=10% Similarity=-0.059 Sum_probs=33.1
Q ss_pred CCeeeEEEeeCCC--EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGS--YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~--~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..+.+.|...++. ...+.|++..|++++-+.|..+.|++.
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~ 55 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCA 55 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCT
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCH
Confidence 3455567766664 788999999999999999999999985
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=71.59 E-value=9.2 Score=27.45 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.8
Q ss_pred CeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcC-CCCCCCceEEEE
Q psy8906 110 PIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLG-LRDGALGYAIYE 157 (180)
Q Consensus 110 ~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lg-l~~~~~gfaL~~ 157 (180)
...++|.|+||....-.+....|+.||.+.|...+. .. ...|.|..
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t 98 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMT 98 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEec
Confidence 466789999999999999999999999999988742 22 46688764
No 120
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=71.34 E-value=4 Score=27.40 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=34.7
Q ss_pred eeeEEEeeCCCEEEEEec--ccCCHHHHHHHH-HHHcCCCCCCCceEEE
Q psy8906 111 IYARFYFMDGSYHAVEFH--PSATARDAVALI-RAKLGLRDGALGYAIY 156 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vd--s~tt~~ev~~~i-~~~lgl~~~~~gfaL~ 156 (180)
|.+.|..++|....+.|+ +..|+.++-+.| ..+-|++. +.--|.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~--~~QrLi 48 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHI--SEIKLL 48 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSS--TTEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCCh--HHEEEE
Confidence 556788889988888766 999999999999 88888864 444444
No 121
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=69.91 E-value=20 Score=25.59 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=43.2
Q ss_pred eeEEEeeC--C-CEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCee
Q psy8906 112 YARFYFMD--G-SYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYT 164 (180)
Q Consensus 112 ~~~i~~~d--g-~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~ 164 (180)
.++|.+-+ | .++.|.+.+.-.+..|+.+...+.+|... ++.|.|+....+|..
T Consensus 30 IIRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kE 86 (115)
T 1rax_A 30 IIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRK 86 (115)
T ss_dssp EEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCE
T ss_pred EEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCe
Confidence 34566543 3 38999999999999999999999999854 789999999865543
No 122
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=69.37 E-value=7 Score=27.36 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=38.0
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
..|.+.|.- +|....+.|...|+.+.+.+..|++.|+.. ...-+.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~--~~~rF~ 74 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM--DSLRFL 74 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG--GGEEEE
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc--ccEEEE
Confidence 457788888 899999999999999999999999999974 444443
No 123
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.63 E-value=9.1 Score=25.40 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=31.8
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHc
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKL 144 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~l 144 (180)
..|.+.|...+|....+.|+...|++++-+.|..+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 457788888899999999999999999999998875
No 124
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=68.42 E-value=1 Score=33.69 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|++.+|++++-+.|....|++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~ 38 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (152)
T ss_dssp --------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 34566778899999999999999999999999999874
No 125
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=67.76 E-value=11 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCeeeEEEeeCCCEE-EEEecccCCHHHHHHHHHHHc
Q psy8906 109 RPIYARFYFMDGSYH-AVEFHPSATARDAVALIRAKL 144 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~-~v~vds~tt~~ev~~~i~~~l 144 (180)
..+.+.|...+|+.. .+.+++++|+.+|-+.|....
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~ 51 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEW 51 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhc
Confidence 678899999999876 799999999999999997654
No 126
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.62 E-value=18 Score=24.11 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=36.9
Q ss_pred CeeeEEEee---CCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 110 PIYARFYFM---DGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 110 ~i~~~i~~~---dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
.+.+.|.++ +|......+...+|++++-..|.+..|++. .-.-|+..
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~--~~q~L~~~ 58 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPV--SELLLSYE 58 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCT--TTCEEEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCCh--hHeEEEEE
Confidence 455666664 677889999999999999999999999975 44455544
No 127
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=65.58 E-value=17 Score=25.16 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=36.8
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
....++|.||||+...-.+....|+++|...|... +.. ...|.|..
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~--~~~f~L~t 67 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYH--KSLYRLST 67 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCC--TTTEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEEe
Confidence 35667899999999999999999999999999865 332 46677754
No 128
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=65.35 E-value=33 Score=25.25 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=43.3
Q ss_pred eEEEee--CCC-EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCee
Q psy8906 113 ARFYFM--DGS-YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYT 164 (180)
Q Consensus 113 ~~i~~~--dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~ 164 (180)
++|.+- +|. ++.|.+.+.-.+..|+.+...+-++... .+.|.|+....+|..
T Consensus 28 IRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kE 83 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRK 83 (140)
T ss_dssp EEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEE
T ss_pred EEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCe
Confidence 355554 554 8999999999999999999999999976 599999999876643
No 129
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=65.10 E-value=18 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLR 147 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~ 147 (180)
.++.++|+|- -..+|.|.+..+..++.+.|+++|++.
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578899988 479999999999999999999999996
No 130
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=64.80 E-value=11 Score=31.24 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=35.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|...+|....+.|++.+|++++-+.|..+.|+..
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~ 271 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 4566778888899999999999999999999999999974
No 131
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=64.24 E-value=13 Score=25.46 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=32.1
Q ss_pred CCCeeeEEEeeCCCEEEE--EecccCCHHHHHHHH-HHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAV--EFHPSATARDAVALI-RAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v--~vds~tt~~ev~~~i-~~~lgl~~ 148 (180)
...|.+.|..++|....+ .|++..|++++-+.| ...-|+..
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~ 60 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHI 60 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCG
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCCh
Confidence 356888899999986666 556999999999999 66667753
No 132
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=62.94 E-value=1.5 Score=34.11 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.+.|..++|....+.|+++.|+.+|-+.|....|++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~ 38 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEI 38 (189)
T ss_dssp --------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcCh
Confidence 34556678899999999999999999999999999874
No 133
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=62.93 E-value=17 Score=24.20 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=39.3
Q ss_pred eeeEEEe--eCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEe
Q psy8906 111 IYARFYF--MDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVG 159 (180)
Q Consensus 111 i~~~i~~--~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~ 159 (180)
|.++|-| +.|....+.|....|++++++.+.+.+++... .+||.+=+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~N 56 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVN 56 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGG
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEec
Confidence 3445555 58889999999999999999999999999864 5678765543
No 134
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.52 E-value=12 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCeeeEEEeeCC---CEEEEEec--------c-cCCHHHHHHHHHHHc--CCCC
Q psy8906 109 RPIYARFYFMDG---SYHAVEFH--------P-SATARDAVALIRAKL--GLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg---~~~~v~vd--------s-~tt~~ev~~~i~~~l--gl~~ 148 (180)
..|.+.|...+| ....+.|+ + .+|+.++-+.|..+. |+..
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~ 64 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPD 64 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCCh
Confidence 457788889999 77888854 4 499999999999999 9874
No 135
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=62.14 E-value=6.6 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCeeEEeecCcccc
Q psy8906 150 ALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 150 ~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
.+.=++|++.++|+.||-+|+.||-
T Consensus 32 ~nt~g~yvvs~tggvw~i~~~~dyp 56 (98)
T 4fp5_D 32 NNTDGMYVVSSTGGVWRISRAKDYP 56 (98)
T ss_dssp TTTCEEEEEETTCCEEEECCCSSTT
T ss_pred CCCccEEEEecCCcEEEecCCCCCC
Confidence 3556899999999999999999994
No 136
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=61.72 E-value=6.8 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCeeEEeecCcccc
Q psy8906 150 ALGYAIYEVGTLGYTIYEVGALGYA 174 (180)
Q Consensus 150 ~~gfaL~~~~~~~~~~~~~~~~~~~ 174 (180)
.+.=++|++.++|+.||-.|+.||-
T Consensus 32 ~nt~g~yvvs~tggvw~i~~~~dyp 56 (99)
T 1qb5_D 32 NNTDGMYVVSSTGGVWRISRAKDYP 56 (99)
T ss_dssp TTTCEEEEEETTSCEEEECCCSSTT
T ss_pred CCCccEEEEecCCcEEEecCCCCCC
Confidence 3556899999999999999999994
No 137
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=61.28 E-value=10 Score=25.94 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=39.3
Q ss_pred CEEEEEecccCCHHHHHHHHHHHcCCCC-CCCceEEEEEecCCee
Q psy8906 121 SYHAVEFHPSATARDAVALIRAKLGLRD-GALGYAIYEVGTLGYT 164 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~~lgl~~-~~~gfaL~~~~~~~~~ 164 (180)
.++.|.+.+.-.+..|+.+...+.++.+ .++.|.|+....+|..
T Consensus 20 ~YKSIlltsqDktp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kE 64 (90)
T 1rlf_A 20 VYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGDRE 64 (90)
T ss_dssp SCCEEEEETTCCCTTHHHHHHHHTTTTSCCCCCEEEEETTTTCEE
T ss_pred eEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCE
Confidence 4899999999999999999999999997 4899999998876653
No 138
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.45 E-value=28 Score=23.05 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=31.9
Q ss_pred CeeeEEEeeCCC-EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 110 PIYARFYFMDGS-YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 110 ~i~~~i~~~dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.+.+.|...+.. ...+.|++..|++++-+.|..+-|++.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~ 46 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPA 46 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCT
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCH
Confidence 355666655543 688999999999999999999999975
No 139
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=57.37 E-value=20 Score=24.23 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.4
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
..+.+.|||-|+ -.++-|.+..+..|+.+.|+.++.+. .+-++.-
T Consensus 11 ~~~KVK~yy~DD-IiAIrvP~di~~~~L~dKi~~RLk~~----~~~l~~y 55 (85)
T 1ip9_A 11 KTTKIKFYYKDD-IFALMLKGDTTYKELRSKIAPRIDTD----NFKLQTK 55 (85)
T ss_dssp CCEEEEECBTTC-CEEEEECSCCCHHHHHHHHHHHHTSS----CEEEEEC
T ss_pred CceEEEEEecCc-EEEEECCCCCCHHHHHHHHHHHhccc----ceEEEEe
Confidence 567888997765 79999999999999999999999994 3555553
No 140
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=55.86 E-value=50 Score=23.16 Aligned_cols=69 Identities=16% Similarity=0.011 Sum_probs=44.9
Q ss_pred HHHHHhh-cCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHc-------CCCCCCCceEEEEEecCCeeEEeecC
Q psy8906 100 EEILCTI-NRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKL-------GLRDGALGYAIYEVGTLGYTIYEVGA 170 (180)
Q Consensus 100 ~Ei~a~~-~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~l-------gl~~~~~gfaL~~~~~~~~~~~~~~~ 170 (180)
.++-+.. ....+.+.+.+|+|-...+.+...+|..|+-+++-++. -|.+ ++.|...-.+.+ ..+.|.-+
T Consensus 8 ~~~W~~~~~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d-~~~Y~F~~in~~-~e~Eel~D 84 (108)
T 2v1y_A 8 GELWGIHLMPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQD-ESSYIFVSVTQE-AEREEFFD 84 (108)
T ss_dssp --------CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCC-GGGCEEEEEBTT-SCEEEECC
T ss_pred cccccccCCCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCC-ccceEEEEecCC-ceEEEeEc
Confidence 3444433 34567788999999999999999999999988776663 2333 677876665554 44444433
No 141
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=55.76 E-value=30 Score=23.94 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=39.9
Q ss_pred CeeeEEEeeC-------CCEEEEEecccCCHHHHHHHHHHHcCCCCCC---CceEEEEEecCCe
Q psy8906 110 PIYARFYFMD-------GSYHAVEFHPSATARDAVALIRAKLGLRDGA---LGYAIYEVGTLGY 163 (180)
Q Consensus 110 ~i~~~i~~~d-------g~~~~v~vds~tt~~ev~~~i~~~lgl~~~~---~gfaL~~~~~~~~ 163 (180)
.+.++|++-+ +....+-|.+..+..|+...|.+++++.... ..+-|-....+|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD 68 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGD 68 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCC
Confidence 4788888764 4468999999999999999999999986211 2355655555543
No 142
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=55.06 E-value=18 Score=30.01 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
..|.+.|.. +|....+.|++..|++++-++|.+..|+..
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp 42 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRP 42 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 346777774 788889999999999999999999988764
No 143
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=54.99 E-value=28 Score=23.65 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=35.2
Q ss_pred CeeeEEEeeCCC--EEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEE
Q psy8906 110 PIYARFYFMDGS--YHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158 (180)
Q Consensus 110 ~i~~~i~~~dg~--~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~ 158 (180)
.+.+.|...+.. ...+.|++..|++++-+.|..+-|++. +---|+..
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~--~~QrLi~~ 62 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSV--NSMALELY 62 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCT--TSEEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCH--HHeEEEEe
Confidence 344556665543 688999999999999999999999985 44445443
No 144
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=54.75 E-value=22 Score=27.03 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=44.4
Q ss_pred CHHHHHHhhcCCCeeeEEE----eeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecC
Q psy8906 98 SREEILCTINRRPIYARFY----FMDGSYHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTL 161 (180)
Q Consensus 98 S~~Ei~a~~~~~~i~~~i~----~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~ 161 (180)
...|+-+-.+- |=.++|| .++..++.+-....+|+.++|.+..++-||... ..-|+|..+.+.
T Consensus 24 ~p~els~~~~~-PG~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALERYgL~ke~~~~y~Lcdvig~ 91 (166)
T 3ec8_A 24 DPAELSTQLSA-PGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQ 91 (166)
T ss_dssp CHHHHHHHHHC-EEEEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHHHTTSCGGGGGGEEEEEEEC-
T ss_pred ChHHcccccCC-CcceEecccccCCCCCceeeeccccccHHHHHHHHHHHhccCcCCcceeEEEEeecC
Confidence 33455443322 2334555 556678999999999999999999999999753 677999877543
No 145
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=54.65 E-value=11 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=30.3
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEEEec
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEVGT 160 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~~~~ 160 (180)
|.++|.+.+.....+++...+|++|++ +++|+.. ++- +.+.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~--~~V-vV~vNG 43 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSP--HEV-TVLVDG 43 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCS--SCC-CEECCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCc--ceE-EEEECC
Confidence 456777776667778999999998887 5688874 555 344433
No 146
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=50.44 E-value=29 Score=24.66 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=30.7
Q ss_pred EEeeCC-CEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEE
Q psy8906 115 FYFMDG-SYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIY 156 (180)
Q Consensus 115 i~~~dg-~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~ 156 (180)
|....| +...+.|+++.|++++-+.|..+.|+.. +---|+
T Consensus 5 l~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~--~qQrLi 45 (118)
T 2fnj_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPP--EEQRLY 45 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCG--GGEEEE
T ss_pred EEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCH--HHeEEE
Confidence 333445 4688999999999999999999999973 444444
No 147
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=50.08 E-value=13 Score=25.99 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=38.7
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCee
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYT 164 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~ 164 (180)
++.|.+.+.-.+..|+.+...+.++.+. ++.|.|+....+|..
T Consensus 33 YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kE 76 (103)
T 1ef5_A 33 YKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKE 76 (103)
T ss_dssp CCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCC
T ss_pred EEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCE
Confidence 8899999999999999999999999976 599999999876554
No 148
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=47.90 E-value=61 Score=22.98 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHhhcCCCeeeEEEe--------eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 100 EEILCTINRRPIYARFYF--------MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 100 ~Ei~a~~~~~~i~~~i~~--------~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.|.+.++.+.|-.++|-+ |+=.....-|.+..|+++++.-|-++|+|.. .+.+=||+
T Consensus 19 ~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~-~~alFl~V 83 (119)
T 3h9d_A 19 SDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEA-ESALFVYT 83 (119)
T ss_dssp HHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCT-TSCCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCc-cceEEEEE
Confidence 356666666665555433 2223345678899999999999999999985 45555554
No 149
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=45.51 E-value=76 Score=22.43 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=39.1
Q ss_pred HHHHHhhcCCCeeeEEEe--------eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 100 EEILCTINRRPIYARFYF--------MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 100 ~Ei~a~~~~~~i~~~i~~--------~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.|.+.++.+.|-.++|-+ |+=.....-|.+..|+++++.-|-++|+|.. .+.+=||+
T Consensus 18 ~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~-~~alFl~V 82 (118)
T 3rui_B 18 AESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPP-EKAIFIFV 82 (118)
T ss_dssp HHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCT-TCCEEEEB
T ss_pred HHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCC-CccEEEEE
Confidence 466666666666665433 2223346778999999999999999999975 35444444
No 150
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=45.17 E-value=41 Score=21.17 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=24.8
Q ss_pred eeeEEEeeCCCE-EEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGSY-HAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~~-~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
|.++|.|+.... ..+++ ..+|++|+++.+..+-++..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~ 38 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKE 38 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTT
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHH
Confidence 345666555432 45677 56899999999987655543
No 151
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=44.30 E-value=21 Score=30.36 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLG 145 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lg 145 (180)
..|.+.|...+|....+.|+...||.+|-+.|..+.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~ 42 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG 42 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhC
Confidence 4678889889999999999999999999999999543
No 152
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=43.95 E-value=70 Score=22.93 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=37.7
Q ss_pred HHHHHhhcCCCeeeEEEe--------eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 100 EEILCTINRRPIYARFYF--------MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 100 ~Ei~a~~~~~~i~~~i~~--------~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
.|.+.++.+.|-.++|-+ |+=.....-|.+..|+++++.-|-++|.|++ .+.+=||+
T Consensus 24 ~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~-~~alFl~V 88 (125)
T 3m95_A 24 AEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP-EDALFFFV 88 (125)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCT-TSCCEEEB
T ss_pred HHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCc-cccEEEEE
Confidence 356666666555555332 2223456678899999999999999999985 34443443
No 153
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=43.50 E-value=14 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=24.3
Q ss_pred CEEEEEecccCCHHHHHHHHHH--HcCCCCC
Q psy8906 121 SYHAVEFHPSATARDAVALIRA--KLGLRDG 149 (180)
Q Consensus 121 ~~~~v~vds~tt~~ev~~~i~~--~lgl~~~ 149 (180)
..+.++|+++.|.+|+++.+++ ++.|+.+
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~P 35 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSP 35 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCC
Confidence 3567899999999999999999 5677654
No 154
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.15 E-value=37 Score=22.34 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=31.4
Q ss_pred eeeEEEeeCCCEE--EE-EecccCCHHHHHHHHHHH-cCCCCCCCc
Q psy8906 111 IYARFYFMDGSYH--AV-EFHPSATARDAVALIRAK-LGLRDGALG 152 (180)
Q Consensus 111 i~~~i~~~dg~~~--~v-~vds~tt~~ev~~~i~~~-lgl~~~~~g 152 (180)
|.+.|.-..|... .+ +|++..|++|+-+.|.++ -|+....+.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~Qr 56 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQS 56 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeE
Confidence 5667776766543 57 999999999999999995 577643333
No 155
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=42.81 E-value=26 Score=24.01 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHhhcCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 101 EILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 101 Ei~a~~~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
|+..++++.. ..-+++.-++...+.|++..|+..+-+.|.++-|+...
T Consensus 5 e~~dIL~rkv-vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 5 STSDILHRMV-IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp GGGCGGGEEE-EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHhcee-EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 4445554432 22345556678999999999999999999999999863
No 156
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=40.01 E-value=19 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=25.3
Q ss_pred eeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCC
Q psy8906 112 YARFYFMDGSYHAVEFHPSATARDAVALIRAKLGL 146 (180)
Q Consensus 112 ~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl 146 (180)
.+.|++|||... .+..-+|+.|++..|-..+|-
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~ 39 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN 39 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc
Confidence 467899999754 566778999999888666653
No 157
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=39.38 E-value=96 Score=30.18 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=48.8
Q ss_pred CCCCCCC---HHHHHHhh----cCCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHc-------CCCCCCCceEEEE
Q psy8906 92 RRQWPPS---REEILCTI----NRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKL-------GLRDGALGYAIYE 157 (180)
Q Consensus 92 ~R~~~PS---~~Ei~a~~----~~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~l-------gl~~~~~gfaL~~ 157 (180)
.|+.||+ ..++-+.. ....+.+.+.+|+|....+.|....|.+++-+++-++. .|.+ .+.|-+..
T Consensus 26 ~~~~~p~~~~~~~~w~~~~~~~~~~~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~-~~~Y~f~~ 104 (1092)
T 2y3a_A 26 MGSMPPAMADNLDIWAVDSQIASDGAISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMD-IDSYMFAC 104 (1092)
T ss_dssp ---------------CCSSCSSCCSEEEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCC-GGGEEEEE
T ss_pred ccCCCCCCCCCccccccccccCCCCceEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCC-cceeEEEE
Confidence 3667764 35565554 34567788999999999999999999999999888873 2232 67787666
Q ss_pred EecCCeeEEeecCc
Q psy8906 158 VGTLGYTIYEVGAL 171 (180)
Q Consensus 158 ~~~~~~~~~~~~~~ 171 (180)
...+| .++|.-+-
T Consensus 105 i~~~~-e~ee~~de 117 (1092)
T 2y3a_A 105 VNQTA-VYEELEDE 117 (1092)
T ss_dssp EBSSS-CEEECCCT
T ss_pred ecCCc-eEEEeecC
Confidence 55544 56666544
No 158
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=36.83 E-value=97 Score=21.00 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=36.2
Q ss_pred CCCeeeEEEeeCCC-EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGS-YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.++|.-.||. ...+.|...|+.+-+...-|++.|+..
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~ 64 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG 64 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 45677888888995 789999999999999999999999974
No 159
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=33.59 E-value=26 Score=22.82 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=21.5
Q ss_pred eeeEEEeeCCCEEEEEecccCCHHHHHHHHH
Q psy8906 111 IYARFYFMDGSYHAVEFHPSATARDAVALIR 141 (180)
Q Consensus 111 i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~ 141 (180)
..+.|.+|||....+.- .-+|+.|++..+-
T Consensus 10 ~~i~I~lpdG~~~~~~~-~~~T~~dia~~i~ 39 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAES-WKTTPYQIACGIS 39 (88)
T ss_dssp CEEEEECTTSCEEEEET-TTCCHHHHHHHSS
T ss_pred CCEEEEECCCCEEEccc-CCCCHHHHHHHhh
Confidence 44789999998765552 1489999887763
No 160
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=33.53 E-value=91 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=22.6
Q ss_pred EEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 123 HAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 123 ~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
....|....|+++++.-|-++|+|..
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~ 71 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRP 71 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCT
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCC
Confidence 45677888899999999999999975
No 161
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=32.14 E-value=70 Score=25.04 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=35.7
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.++|- .||....++|...|+.+.+....|++.|+..
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~ 94 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 94 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 456778886 5999999999999999999999999999975
No 162
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=31.51 E-value=68 Score=24.83 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=35.6
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.++|- -+|....+.|...|+.+.+....|++.|+..
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~ 66 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 66 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh
Confidence 466788886 4999999999999999999999999999974
No 163
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=31.10 E-value=2e+02 Score=25.31 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=36.1
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCCC-CCceEEEEEecCCeeEEeecCcccch
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRDG-ALGYAIYEVGTLGYTIYEVGALGYAI 175 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~~-~~gfaL~~~~~~~~~~~~~~~~~~~~ 175 (180)
...+-+.-..|++|+++.+.++.++++. ....-|++.. +..+|.+-..+..|
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~--~~ki~ki~~~~~~i 405 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV--SYKIIGVHQEDELL 405 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE--TTEEEEEECTTSBG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE--CCEEEEecCCCccc
Confidence 4556666789999999999999999742 4566677663 34455555555544
No 164
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=29.48 E-value=97 Score=30.18 Aligned_cols=66 Identities=18% Similarity=0.090 Sum_probs=42.9
Q ss_pred CHHHHHHhhcCCC-eeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHc-------CCCCCCCceEEEEEecCCee
Q psy8906 98 SREEILCTINRRP-IYARFYFMDGSYHAVEFHPSATARDAVALIRAKL-------GLRDGALGYAIYEVGTLGYT 164 (180)
Q Consensus 98 S~~Ei~a~~~~~~-i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~l-------gl~~~~~gfaL~~~~~~~~~ 164 (180)
+..|+-+...... +.+.+.+|+|-...+.+....|+.++-+++-.+. .|.+ ++.|.+...+.++..
T Consensus 29 ~~~~~w~~~~~~~~i~vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l~~-~~~y~f~~~~~~~~~ 102 (1091)
T 3hhm_A 29 SSGELWGIHLMPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQD-ESSYIFVSVTQEAER 102 (1091)
T ss_dssp --------------EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCC-GGGCEEEEEBTTSCE
T ss_pred ccchhhcCCCCCCceEEEEEcCCCeEEEEEecCCCcHHHHHHHHHHHHHhCcchhhcCC-hhHeEEEEEccCceE
Confidence 4455555443444 7888999999999999999999999999988875 2333 688877766665443
No 165
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=28.98 E-value=1.6e+02 Score=21.09 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHhhcCCCeeeEEEe---------eCCCEEEEEecccCCHHHHHHHHHHHcCCCCCCCceEEEE
Q psy8906 101 EILCTINRRPIYARFYF---------MDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYE 157 (180)
Q Consensus 101 Ei~a~~~~~~i~~~i~~---------~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~~~gfaL~~ 157 (180)
|.+.++.+.|-.++|-+ |+=.....-|....|+++++.-|-++|+|.. +=|||.
T Consensus 24 e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~---~~alFl 86 (130)
T 2zjd_A 24 DVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNA---NQAFFL 86 (130)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCT---TCCEEE
T ss_pred HHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCC---CceEEE
Confidence 55566666665666443 2222356778899999999999999999975 235665
No 166
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=27.66 E-value=1.5e+02 Score=20.25 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 108 ~~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
...|.++|. -+|....++|-.+|..+-+....|++.|+..
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~ 58 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSP 58 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCG
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCCh
Confidence 455888888 5889999999999999999999999999985
No 167
>3txs_A Terminase DNA packaging enzyme small subunit; helix, small terminase, viral protein; 1.81A {Aeromonas phage 44RR2} PDB: 3txq_A
Probab=26.69 E-value=16 Score=25.07 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCC
Q psy8906 13 ELYLQLIKQTTDHP 26 (180)
Q Consensus 13 Eiy~QliKQtt~Np 26 (180)
|+|.++|||.+++.
T Consensus 61 EVf~~lm~qmt~~~ 74 (94)
T 3txs_A 61 EVFAQLMGQMTTTN 74 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998764
No 168
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.37 E-value=1.4e+02 Score=19.57 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=22.0
Q ss_pred EEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 114 ~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.|++.||+.. +. -+.+|+.+.|.+..||..
T Consensus 58 ~I~i~Dg~~l---~~--~~~~el~~~L~el~gL~~ 87 (92)
T 2lqo_A 58 TVKFADGSTL---TN--PSADEVKAKLVKIAGLEH 87 (92)
T ss_dssp EEEETTSCEE---ES--CCHHHHHHHHHHHHCCSC
T ss_pred EEEEeCCEEE---eC--CCHHHHHHHHHHhcCCcc
Confidence 4667788632 22 367899999999999975
No 169
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=25.73 E-value=2.2e+02 Score=27.21 Aligned_cols=52 Identities=6% Similarity=0.129 Sum_probs=37.7
Q ss_pred CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHc-------CCCCC--CCceEEEEEecC
Q psy8906 109 RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKL-------GLRDG--ALGYAIYEVGTL 161 (180)
Q Consensus 109 ~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~l-------gl~~~--~~gfaL~~~~~~ 161 (180)
..+.+.|+ .+++...+.|+...|+.++++.+.+++ |+... +..|.|=++..+
T Consensus 77 ~~~~v~i~-~~~~~~t~~v~~~~t~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~vLkv~G~~ 137 (961)
T 1e7u_A 77 NCVFIVIH-RSTTSQTIKVSADDTPGTILQSFFTKMAKKKSLMDIPESQNERDFVLRVCGRD 137 (961)
T ss_dssp SEEEEEEE-SSSCEEEEEEETTCCHHHHHHHHHHHSCC-----------CCSCCEEEETTSS
T ss_pred CceEEEEe-cCCceEEEEECCCCCHHHHHHHHHHHhhhccccccCCCCCCccceEEEecCce
Confidence 45667787 677889999999999999999999887 44432 456887665444
No 170
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=24.84 E-value=1.7e+02 Score=20.10 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=31.0
Q ss_pred eeeEEEeeCCC-EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 111 IYARFYFMDGS-YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 111 i~~~i~~~dg~-~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.+.|...++. ...+.|++..|++++-+.|...-|++.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~ 45 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTV 45 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCT
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 44556655543 688999999999999999999999985
No 171
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=24.51 E-value=1.8e+02 Score=20.23 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.0
Q ss_pred EEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 122 YHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 122 ~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
.....|....|+++++.-|-++|+|..
T Consensus 46 k~KflVp~~~tv~~f~~~iRk~l~l~~ 72 (117)
T 1eo6_A 46 KRKYLVPSDITVAQFMWIIRKRIQLPS 72 (117)
T ss_dssp CCEEEEETTSBHHHHHHHHHHHHTCCT
T ss_pred ceEEEcCCCCCHHHHHHhhHHhhcCCC
Confidence 345678888899999999999999975
No 172
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=23.86 E-value=2.9e+02 Score=22.31 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCHHHHHHhhcC---CCeeeEEEeeCCCEEEEEecccCCHHHHHHHHHHHcCCCCC
Q psy8906 74 GKYARFAEKCVLKTQGTRRRQWPPSREEILCTINR---RPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDG 149 (180)
Q Consensus 74 ~~~a~~c~~~L~r~~~~g~R~~~PS~~Ei~a~~~~---~~i~~~i~~~dg~~~~v~vds~tt~~ev~~~i~~~lgl~~~ 149 (180)
..+......-|++++..-|.+ -||..|+...... +.+...+.+..-+...+.+++..|..++.+++.++.|+...
T Consensus 273 ~~~~~~l~~ll~~~L~~dP~~-R~s~~e~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~ 350 (396)
T 4eut_A 273 RGLQVLLTPVLANILEADQEK-CWGFDQFFAETSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISS 350 (396)
T ss_dssp HHHHHHHHHHHHHHSCCCTTT-SCCHHHHHHHHHHHHTCEEEEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCST
T ss_pred hHHHhhchHHHHHhhccChhh-hccHHHHHHHHHHHhhceEEEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChh
Confidence 344445555666666666633 4677666443322 33434455556677889999999999999999999999753
No 173
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=23.73 E-value=90 Score=22.11 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=26.3
Q ss_pred CCCEEEEEecccCCHHHHHHHHHHHcCCCC
Q psy8906 119 DGSYHAVEFHPSATARDAVALIRAKLGLRD 148 (180)
Q Consensus 119 dg~~~~v~vds~tt~~ev~~~i~~~lgl~~ 148 (180)
+.++..+.++++.|+.++-+.|..+.|+..
T Consensus 10 ~ktTI~ldve~sdTV~~lK~kI~~~~giPp 39 (118)
T 4ajy_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPP 39 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHCCCH
Confidence 345788899999999999999999999874
No 174
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.31 E-value=25 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHhhhccCCCCCchHHHHHHHHHHHHhh
Q psy8906 57 YLVAHLKRCSSDCVSEEGKYARFAEKCVLKT 87 (180)
Q Consensus 57 yL~~fl~~~~~~~~~~~~~~a~~c~~~L~r~ 87 (180)
-|..||..+..-.+...=.+|-||.+||.+-
T Consensus 20 rL~~HL~~r~DVQNIDLMnLAGFCRNCLskW 50 (104)
T 3fyb_A 20 HLLRHLDEHKDVQNIDLMIQADFCRNCLAKW 50 (104)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHHHH
Confidence 3556665554211112344777888888764
Done!