RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8906
         (180 letters)



>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 108 RRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALGYAIYEV 158
            RP   + Y  DG+  +VE    ATAR    ++  +         + + E 
Sbjct: 7   GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE-TWGLVEC 56


>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
           RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 96  PPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGAL 151
             S EEI C           Y  + SY +V+   S+ A++ + ++  K+   +  L
Sbjct: 4   GSSGEEIFC---------HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDL 50


>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 3   RAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHL 62
             +    +   +Y ++I    +       + L    +   +       + L  +YL+ H 
Sbjct: 77  LDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIP---HQYWLTLQYLLKHF 133

Query: 63  KRCSS 67
            + S 
Sbjct: 134 FKLSQ 138


>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 196

 Score = 29.0 bits (64), Expect = 0.27
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 7   KDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHLKRCS 66
              ++T              + + R+   H  L+ L      PAH    +YL+ HLK+ +
Sbjct: 88  PIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLP-----PAHYETLRYLMIHLKKVT 142

Query: 67  SDC 69
            + 
Sbjct: 143 MNE 145


>d1l4db_ d.15.5.1 (B:) Streptokinase {Streptococcus equisimilis
           [TaxId: 119602]}
          Length = 122

 Score = 26.9 bits (59), Expect = 0.89
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 99  REEILCTINRRPIYARFYFMDGSYHAVEFHPSATARD 135
           + ++L  I  + + A  +  D  +  ++F   AT  D
Sbjct: 51  KADLLKAIQEQ-LIANVHSNDDYFEVIDFASDATITD 86


>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 103

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRDGALG-YAIYEV 158
           IYA     +  Y  +    + TA  AVA    K GL       Y I  V
Sbjct: 7   IYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARV 55


>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6
           (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 96

 Score = 26.1 bits (57), Expect = 1.3
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 7/46 (15%)

Query: 96  PPSREEILCTINRRPIYARFYFMDGSYHAVEFHPSATARDAVALIR 141
           P    E + T+            +G      F  S  ++  +  + 
Sbjct: 9   PSETAEEVVTV-------ALRCPNGRVLRRRFFKSWNSQVLLDWMM 47


>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.5 bits (56), Expect = 1.5
 Identities = 5/38 (13%), Positives = 15/38 (39%)

Query: 111 IYARFYFMDGSYHAVEFHPSATARDAVALIRAKLGLRD 148
           ++ +   +D + +       A  +D +  +   L L +
Sbjct: 1   MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 38


>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 191

 Score = 26.3 bits (57), Expect = 2.2
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 3   RAMRKDSLLTELYLQLIKQTTDHPDPNSRVNLRHWALLCLACSVVLPAHRLVRKYLVAHL 62
           R +    ++ +     I +     +  SRV+  H  +  L        +R +   L+ HL
Sbjct: 76  RMLPGPLMMYQFQRSFI-KAAKLENQESRVSEIHSLVHRLP-----EKNRQMLHLLMNHL 129

Query: 63  KRCSSDC 69
            + + + 
Sbjct: 130 AKVADNH 136


>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
          QPCT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 329

 Score = 25.6 bits (55), Expect = 4.0
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 49 PAHRLVRKYLVAHLKRCSSDCVSEEGKY 76
          P     R++++  ++R  +D V E   +
Sbjct: 50 PGSYAARQHIMQRIQRLQADWVLEIDTF 77


>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
           serine/threonine-protein kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 73

 Score = 23.1 bits (50), Expect = 9.3
 Identities = 5/34 (14%), Positives = 10/34 (29%)

Query: 114 RFYFMDGSYHAVEFHPSATARDAVALIRAKLGLR 147
           + Y  +     V      +  D++       GL 
Sbjct: 4   KVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0445    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,793
Number of extensions: 31691
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 16
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)