Query psy8908
Match_columns 137
No_of_seqs 70 out of 72
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:34:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4559|consensus 100.0 1.4E-36 3E-41 223.1 12.8 117 7-124 2-119 (120)
2 PF10046 BLOC1_2: Biogenesis o 100.0 3.9E-36 8.4E-41 216.2 12.4 98 37-134 1-99 (99)
3 PF10157 DUF2365: Uncharacteri 95.1 0.96 2.1E-05 35.2 12.4 84 31-121 62-146 (149)
4 PF09403 FadA: Adhesion protei 93.9 1.4 2.9E-05 33.5 10.4 102 14-135 8-113 (126)
5 PF04012 PspA_IM30: PspA/IM30 91.6 5.6 0.00012 31.4 12.6 38 98-135 95-132 (221)
6 PRK10698 phage shock protein P 89.9 9.4 0.0002 31.0 12.3 39 98-136 96-134 (222)
7 KOG0980|consensus 88.5 6.5 0.00014 38.6 11.1 81 54-134 407-492 (980)
8 PF10398 DUF2443: Protein of u 88.4 3.2 6.9E-05 29.3 6.8 76 40-127 1-76 (79)
9 PF15358 TSKS: Testis-specific 86.1 9.8 0.00021 34.8 10.2 108 21-136 97-209 (558)
10 PRK11637 AmiB activator; Provi 84.4 27 0.00059 30.4 13.1 78 58-135 168-253 (428)
11 PF10779 XhlA: Haemolysin XhlA 83.1 5.1 0.00011 26.9 5.6 32 103-134 15-46 (71)
12 PF07195 FliD_C: Flagellar hoo 82.4 9.6 0.00021 30.7 8.0 71 63-136 139-232 (239)
13 PRK09039 hypothetical protein; 82.4 27 0.00059 30.1 11.1 89 48-136 79-179 (343)
14 PF13094 CENP-Q: CENP-Q, a CEN 80.7 9.1 0.0002 29.0 6.9 43 94-136 34-76 (160)
15 PF07058 Myosin_HC-like: Myosi 80.5 13 0.00028 32.7 8.4 72 48-119 12-84 (351)
16 smart00787 Spc7 Spc7 kinetocho 78.0 44 0.00095 28.7 11.4 87 48-134 156-258 (312)
17 PF06825 HSBP1: Heat shock fac 77.4 5.8 0.00013 26.1 4.2 42 79-120 4-47 (54)
18 PF00261 Tropomyosin: Tropomyo 76.7 38 0.00082 27.3 11.1 50 51-100 72-122 (237)
19 TIGR03185 DNA_S_dndD DNA sulfu 76.4 42 0.00092 30.9 11.0 36 95-130 422-457 (650)
20 PF02994 Transposase_22: L1 tr 76.3 7.9 0.00017 33.7 6.0 36 99-134 142-177 (370)
21 TIGR00996 Mtu_fam_mce virulenc 75.9 41 0.00089 27.3 12.8 27 105-131 256-282 (291)
22 PRK15365 type III secretion sy 74.9 14 0.0003 27.5 6.0 25 86-110 10-35 (107)
23 PRK08032 fliD flagellar cappin 73.9 25 0.00055 31.3 8.7 105 29-136 314-445 (462)
24 PF11932 DUF3450: Protein of u 73.4 32 0.0007 27.8 8.6 15 102-116 85-99 (251)
25 PF06320 GCN5L1: GCN5-like pro 72.3 38 0.00081 25.2 9.1 71 61-135 34-105 (121)
26 TIGR02132 phaR_Bmeg polyhydrox 71.5 17 0.00036 29.6 6.3 62 61-122 62-128 (189)
27 PF04102 SlyX: SlyX; InterPro 70.7 16 0.00034 24.5 5.2 23 102-124 5-27 (69)
28 COG1730 GIM5 Predicted prefold 70.7 3.7 8.1E-05 31.8 2.4 60 76-135 75-135 (145)
29 PF08317 Spc7: Spc7 kinetochor 70.2 67 0.0014 27.2 11.3 23 29-51 112-134 (325)
30 PF10046 BLOC1_2: Biogenesis o 69.7 37 0.0008 24.1 9.7 69 68-136 18-94 (99)
31 smart00787 Spc7 Spc7 kinetocho 69.2 73 0.0016 27.3 13.2 68 29-96 107-177 (312)
32 PF02994 Transposase_22: L1 tr 68.5 12 0.00026 32.6 5.3 42 95-136 145-186 (370)
33 PF06103 DUF948: Bacterial pro 67.9 36 0.00078 23.2 7.2 39 75-113 48-87 (90)
34 PF07544 Med9: RNA polymerase 66.6 14 0.0003 25.7 4.4 55 79-133 22-77 (83)
35 PHA02562 46 endonuclease subun 66.2 94 0.002 27.4 11.3 39 96-134 353-391 (562)
36 PRK00736 hypothetical protein; 65.9 22 0.00048 23.9 5.2 25 101-125 5-29 (68)
37 COG1842 PspA Phage shock prote 65.9 74 0.0016 26.1 12.7 38 98-135 96-133 (225)
38 PF00804 Syntaxin: Syntaxin; 65.5 24 0.00051 23.5 5.3 62 72-136 8-70 (103)
39 COG5158 SEC1 Proteins involved 65.4 44 0.00095 31.4 8.6 90 26-115 272-370 (582)
40 PF10779 XhlA: Haemolysin XhlA 64.8 39 0.00084 22.5 6.6 40 97-136 2-41 (71)
41 PHA03395 p10 fibrous body prot 64.5 31 0.00067 24.9 5.9 50 67-116 14-64 (87)
42 KOG0250|consensus 64.5 1.7E+02 0.0036 29.7 13.4 94 32-125 256-351 (1074)
43 cd07672 F-BAR_PSTPIP2 The F-BA 64.4 79 0.0017 25.9 10.7 80 18-101 2-85 (240)
44 PRK00286 xseA exodeoxyribonucl 63.9 1E+02 0.0022 26.9 13.0 47 16-62 248-294 (438)
45 PRK04325 hypothetical protein; 63.6 25 0.00055 24.0 5.2 25 101-125 9-33 (74)
46 PF06657 Cep57_MT_bd: Centroso 63.3 37 0.00079 23.5 6.0 60 75-135 14-74 (79)
47 PRK14011 prefoldin subunit alp 63.2 29 0.00062 26.7 5.9 41 88-128 3-44 (144)
48 PF00261 Tropomyosin: Tropomyo 63.1 79 0.0017 25.5 11.8 74 62-135 132-210 (237)
49 PF10146 zf-C4H2: Zinc finger- 63.0 86 0.0019 25.9 10.9 41 91-131 43-83 (230)
50 PRK02793 phi X174 lysis protei 62.9 27 0.00058 23.8 5.2 24 101-124 8-31 (72)
51 KOG0804|consensus 62.7 1.3E+02 0.0028 27.8 11.8 70 39-108 335-406 (493)
52 PF14193 DUF4315: Domain of un 62.7 28 0.0006 24.6 5.4 34 102-135 2-35 (83)
53 PRK06798 fliD flagellar cappin 62.6 63 0.0014 28.9 8.8 36 98-136 383-418 (440)
54 PRK00295 hypothetical protein; 62.4 28 0.00061 23.4 5.2 23 102-124 6-28 (68)
55 PF04912 Dynamitin: Dynamitin 62.1 1.1E+02 0.0023 26.6 10.4 17 118-134 371-387 (388)
56 PRK03918 chromosome segregatio 62.1 1.4E+02 0.003 28.0 11.9 7 108-114 252-258 (880)
57 PF03233 Cauli_AT: Aphid trans 61.8 66 0.0014 25.6 7.9 120 9-134 26-154 (163)
58 PF10018 Med4: Vitamin-D-recep 60.4 49 0.0011 25.9 7.0 35 101-135 22-56 (188)
59 PF03915 AIP3: Actin interacti 60.2 1.3E+02 0.0029 27.1 10.8 96 38-133 179-278 (424)
60 PRK07737 fliD flagellar cappin 60.1 76 0.0017 28.7 9.0 34 100-136 447-480 (501)
61 PF15112 DUF4559: Domain of un 59.9 1.1E+02 0.0023 26.8 9.4 31 92-122 272-302 (307)
62 PRK10807 paraquat-inducible pr 58.0 1.3E+02 0.0028 27.7 10.2 99 32-130 417-526 (547)
63 PRK04406 hypothetical protein; 57.8 36 0.00079 23.4 5.2 24 101-124 11-34 (75)
64 cd00632 Prefoldin_beta Prefold 57.2 40 0.00088 23.8 5.5 35 101-135 70-104 (105)
65 PF11433 DUF3198: Protein of u 57.1 29 0.00062 22.7 4.2 26 107-132 20-46 (51)
66 PF12718 Tropomyosin_1: Tropom 56.9 84 0.0018 23.8 11.8 45 92-136 92-136 (143)
67 TIGR02338 gimC_beta prefoldin, 56.9 34 0.00075 24.5 5.2 36 101-136 67-102 (110)
68 PRK08724 fliD flagellar cappin 56.5 93 0.002 29.8 9.2 32 101-135 624-655 (673)
69 PRK02119 hypothetical protein; 56.5 40 0.00087 23.0 5.2 24 101-124 9-32 (73)
70 PF15466 DUF4635: Domain of un 56.5 22 0.00047 27.3 4.2 24 104-127 101-124 (135)
71 TIGR00606 rad50 rad50. This fa 56.0 1.6E+02 0.0035 29.7 11.2 67 48-114 827-894 (1311)
72 PF04912 Dynamitin: Dynamitin 55.8 70 0.0015 27.7 7.8 56 77-132 311-367 (388)
73 cd00632 Prefoldin_beta Prefold 55.2 34 0.00074 24.2 4.9 40 97-136 59-98 (105)
74 PRK03918 chromosome segregatio 55.0 1.9E+02 0.004 27.2 11.5 35 98-132 304-338 (880)
75 PF08700 Vps51: Vps51/Vps67; 54.9 60 0.0013 21.5 8.6 55 73-127 28-84 (87)
76 PRK06664 fliD flagellar hook-a 54.8 97 0.0021 29.4 9.0 32 101-135 607-638 (661)
77 PF10158 LOH1CR12: Tumour supp 54.8 92 0.002 23.6 10.0 71 40-117 32-103 (131)
78 PRK15374 pathogenicity island 54.6 1.8E+02 0.0039 27.6 10.5 89 35-127 116-209 (593)
79 PF04156 IncA: IncA protein; 54.4 95 0.0021 23.7 11.8 41 95-135 145-185 (191)
80 PF14662 CCDC155: Coiled-coil 53.6 1.2E+02 0.0027 24.7 11.4 71 66-136 17-95 (193)
81 PRK14011 prefoldin subunit alp 53.6 60 0.0013 24.9 6.3 44 94-137 88-135 (144)
82 smart00721 BAR BAR domain. 53.1 1E+02 0.0022 23.7 9.7 107 21-128 27-158 (239)
83 PF01601 Corona_S2: Coronaviru 53.1 45 0.00097 31.6 6.4 54 68-122 270-325 (610)
84 PF08946 Osmo_CC: Osmosensory 52.5 26 0.00056 22.5 3.4 17 101-117 19-35 (46)
85 PF10168 Nup88: Nuclear pore c 52.5 2E+02 0.0044 27.5 10.8 79 55-136 534-614 (717)
86 PF08317 Spc7: Spc7 kinetochor 52.3 1.5E+02 0.0032 25.2 11.8 42 47-88 160-201 (325)
87 KOG2189|consensus 52.2 52 0.0011 32.2 6.8 72 64-135 49-126 (829)
88 PF13422 DUF4110: Domain of un 52.0 52 0.0011 23.8 5.4 66 35-118 16-83 (96)
89 PF07889 DUF1664: Protein of u 51.9 1E+02 0.0022 23.3 8.4 72 65-136 41-124 (126)
90 COG1382 GimC Prefoldin, chaper 51.8 28 0.0006 26.3 4.1 23 114-136 69-91 (119)
91 COG5420 Uncharacterized conser 51.6 71 0.0015 22.1 5.7 55 61-115 14-69 (71)
92 COG1382 GimC Prefoldin, chaper 51.0 48 0.001 25.0 5.3 37 100-136 69-105 (119)
93 PF15272 BBP1_C: Spindle pole 50.8 1.1E+02 0.0024 25.0 7.6 8 128-135 138-145 (196)
94 PRK07857 hypothetical protein; 50.7 18 0.0004 26.7 2.9 20 94-113 28-47 (106)
95 PF00804 Syntaxin: Syntaxin; 50.3 72 0.0016 21.1 6.5 90 45-134 9-102 (103)
96 PRK00965 tetrahydromethanopter 50.3 17 0.00036 26.6 2.6 17 104-120 34-50 (96)
97 PRK04778 septation ring format 50.0 1.3E+02 0.0028 27.5 8.8 52 51-103 356-409 (569)
98 PF10205 KLRAQ: Predicted coil 49.9 1E+02 0.0022 22.7 8.5 64 69-135 3-67 (102)
99 cd04776 HTH_GnyR Helix-Turn-He 49.7 98 0.0021 22.4 7.0 32 99-130 85-116 (118)
100 PRK00846 hypothetical protein; 49.4 59 0.0013 22.7 5.2 24 101-124 13-36 (77)
101 PRK11637 AmiB activator; Provi 49.3 1.8E+02 0.0039 25.3 14.9 16 11-26 1-16 (428)
102 KOG0933|consensus 48.6 2.6E+02 0.0057 28.5 11.0 95 38-136 677-776 (1174)
103 PF09278 MerR-DNA-bind: MerR, 48.4 36 0.00078 21.4 3.7 25 98-122 40-64 (65)
104 PF07106 TBPIP: Tat binding pr 48.4 1.2E+02 0.0026 23.0 7.6 68 55-122 70-137 (169)
105 PF00015 MCPsignal: Methyl-acc 48.4 1.1E+02 0.0025 22.8 10.3 17 104-120 166-182 (213)
106 PF03310 Cauli_DNA-bind: Cauli 48.0 49 0.0011 25.2 4.9 18 116-133 50-69 (121)
107 COG1463 Ttg2C ABC-type transpo 48.0 1.6E+02 0.0034 25.2 8.7 42 61-102 163-205 (359)
108 PF05565 Sipho_Gp157: Siphovir 48.0 1.2E+02 0.0027 23.2 8.8 45 91-135 37-81 (162)
109 TIGR01795 CM_mono_cladeE monof 46.9 24 0.00052 25.1 3.0 20 94-113 3-22 (94)
110 cd04779 HTH_MerR-like_sg4 Heli 46.9 1.2E+02 0.0026 22.7 7.2 28 100-127 80-107 (134)
111 PF09730 BicD: Microtubule-ass 46.7 2.8E+02 0.006 26.9 10.7 66 70-135 358-432 (717)
112 TIGR01801 CM_A chorismate muta 46.6 23 0.0005 25.5 2.8 20 94-113 4-23 (102)
113 PRK06285 chorismate mutase; Pr 46.4 26 0.00056 24.7 3.1 20 94-113 7-26 (96)
114 cd04779 HTH_MerR-like_sg4 Heli 46.4 1.2E+02 0.0027 22.7 7.0 32 91-122 78-109 (134)
115 PF07083 DUF1351: Protein of u 46.2 1.1E+02 0.0025 24.5 7.1 65 69-133 37-107 (215)
116 PF12308 Noelin-1: Neurogenesi 46.0 1.1E+02 0.0025 22.6 6.4 17 119-135 72-88 (101)
117 PRK07248 hypothetical protein; 46.0 24 0.00052 24.2 2.8 18 96-113 3-20 (87)
118 COG4942 Membrane-bound metallo 45.9 1.3E+02 0.0029 27.2 8.1 17 117-133 89-105 (420)
119 TIGR01791 CM_archaeal chorisma 45.8 24 0.00051 23.9 2.7 18 96-113 1-18 (83)
120 PF02646 RmuC: RmuC family; I 45.5 1.8E+02 0.004 24.4 8.6 64 71-134 226-291 (304)
121 cd07665 BAR_SNX1 The Bin/Amphi 45.3 70 0.0015 26.4 5.8 49 81-129 4-57 (234)
122 PHA02562 46 endonuclease subun 45.2 2.2E+02 0.0047 25.1 13.9 50 70-119 298-348 (562)
123 TIGR01805 CM_mono_grmpos monof 45.0 25 0.00054 23.8 2.7 18 96-113 1-18 (81)
124 PF15450 DUF4631: Domain of un 44.8 2.7E+02 0.0059 26.1 12.9 107 29-135 302-418 (531)
125 TIGR01808 CM_M_hiGC-arch monof 44.8 25 0.00055 23.8 2.7 19 95-113 1-19 (74)
126 TIGR03545 conserved hypothetic 44.8 1E+02 0.0022 28.6 7.4 77 60-136 153-237 (555)
127 PRK10869 recombination and rep 44.7 1.9E+02 0.0042 26.5 9.1 21 106-126 270-290 (553)
128 PF08775 ParB: ParB family; I 44.6 75 0.0016 24.0 5.5 38 54-91 7-45 (127)
129 PF05440 MtrB: Tetrahydrometha 44.6 22 0.00048 26.0 2.5 17 104-120 33-49 (97)
130 cd04769 HTH_MerR2 Helix-Turn-H 44.4 1.2E+02 0.0025 21.7 6.4 60 70-129 49-114 (116)
131 TIGR02977 phageshock_pspA phag 44.3 1.6E+02 0.0035 23.4 13.2 40 96-135 94-133 (219)
132 KOG0804|consensus 44.2 1.5E+02 0.0032 27.5 8.1 83 47-129 325-421 (493)
133 cd07666 BAR_SNX7 The Bin/Amphi 43.9 59 0.0013 27.1 5.2 67 69-135 52-134 (243)
134 TIGR01807 CM_P2 chorismate mut 43.9 27 0.00059 23.3 2.8 18 96-113 1-18 (76)
135 PF03670 UPF0184: Uncharacteri 43.5 87 0.0019 22.3 5.3 25 104-128 43-67 (83)
136 cd04776 HTH_GnyR Helix-Turn-He 43.3 1.3E+02 0.0027 21.8 7.3 36 101-136 80-115 (118)
137 COG4062 MtrB Tetrahydromethano 42.9 26 0.00056 26.1 2.6 19 103-121 33-51 (108)
138 PF05531 NPV_P10: Nucleopolyhe 42.5 1.2E+02 0.0025 21.3 6.3 13 103-115 44-56 (75)
139 cd00082 HisKA Histidine Kinase 42.5 63 0.0014 18.2 6.0 25 100-124 40-64 (65)
140 PF15397 DUF4618: Domain of un 42.5 2.1E+02 0.0046 24.2 8.7 77 54-136 10-88 (258)
141 PF13166 AAA_13: AAA domain 42.3 2.7E+02 0.0059 25.5 11.2 11 105-115 421-431 (712)
142 cd07594 BAR_Endophilin_B The B 42.3 1.6E+02 0.0034 24.3 7.4 53 22-75 18-70 (229)
143 COG1730 GIM5 Predicted prefold 42.1 1.1E+02 0.0023 23.7 6.1 42 88-129 6-48 (145)
144 PRK01203 prefoldin subunit alp 42.0 86 0.0019 23.9 5.5 35 100-134 86-120 (130)
145 PF01496 V_ATPase_I: V-type AT 41.9 8.6 0.00019 36.1 0.0 35 102-136 68-102 (759)
146 COG3883 Uncharacterized protei 41.9 1.5E+02 0.0032 25.3 7.3 58 68-128 35-93 (265)
147 KOG3366|consensus 41.8 93 0.002 25.0 5.8 63 40-110 31-99 (172)
148 KOG0250|consensus 41.8 1.7E+02 0.0037 29.6 8.7 29 69-97 335-364 (1074)
149 PF02403 Seryl_tRNA_N: Seryl-t 41.6 1.2E+02 0.0026 21.1 7.2 56 66-121 38-94 (108)
150 PRK04863 mukB cell division pr 41.4 4.4E+02 0.0096 27.6 12.0 37 68-104 304-341 (1486)
151 PRK07075 isochorismate-pyruvat 41.4 33 0.00072 24.6 3.0 20 94-113 8-27 (101)
152 PF07106 TBPIP: Tat binding pr 41.3 86 0.0019 23.8 5.5 31 103-133 74-104 (169)
153 TIGR02916 PEP_his_kin putative 41.3 2.8E+02 0.0061 25.3 11.3 94 30-123 439-534 (679)
154 PF05377 FlaC_arch: Flagella a 41.2 1E+02 0.0023 20.3 5.1 18 101-118 21-38 (55)
155 TIGR02132 phaR_Bmeg polyhydrox 41.1 2E+02 0.0043 23.5 12.9 20 34-53 10-29 (189)
156 PF13747 DUF4164: Domain of un 40.9 1.3E+02 0.0028 21.2 6.1 11 104-114 35-45 (89)
157 COG3352 FlaC Putative archaeal 40.9 1.6E+02 0.0035 23.3 7.0 46 72-119 87-133 (157)
158 TIGR00996 Mtu_fam_mce virulenc 40.9 2E+02 0.0042 23.4 10.1 28 63-90 156-183 (291)
159 smart00388 HisKA His Kinase A 40.8 71 0.0015 18.3 5.0 26 100-125 37-62 (66)
160 PF10392 COG5: Golgi transport 40.3 1.5E+02 0.0032 21.8 8.1 39 91-129 55-93 (132)
161 TIGR01803 CM-like chorismate m 40.3 32 0.0007 23.4 2.7 18 96-113 1-18 (82)
162 PF05667 DUF812: Protein of un 40.3 3.2E+02 0.0069 25.7 10.4 37 99-135 445-481 (594)
163 TIGR02338 gimC_beta prefoldin, 40.2 1.4E+02 0.0029 21.3 6.6 42 93-134 66-107 (110)
164 TIGR01837 PHA_granule_1 poly(h 40.2 1.5E+02 0.0032 21.8 7.8 18 102-119 97-114 (118)
165 PF08656 DASH_Dad3: DASH compl 40.0 72 0.0016 22.4 4.4 44 68-111 7-51 (78)
166 TIGR01799 CM_T chorismate muta 39.5 34 0.00074 23.3 2.7 18 96-113 1-18 (83)
167 cd01109 HTH_YyaN Helix-Turn-He 39.4 1.4E+02 0.0029 21.1 6.0 29 97-125 82-110 (113)
168 PF05266 DUF724: Protein of un 39.4 2E+02 0.0043 23.0 10.5 15 22-36 29-43 (190)
169 PLN02939 transferase, transfer 39.1 1.9E+02 0.0041 29.0 8.5 44 91-134 240-283 (977)
170 PF10552 ORF6C: ORF6C domain; 37.9 67 0.0014 23.2 4.2 39 93-131 7-45 (116)
171 PF03961 DUF342: Protein of un 37.8 2.5E+02 0.0054 24.7 8.5 63 72-134 342-408 (451)
172 PF05622 HOOK: HOOK protein; 37.3 11 0.00024 35.2 0.0 58 72-129 268-326 (713)
173 PF05461 ApoL: Apolipoprotein 37.3 1.3E+02 0.0029 25.8 6.5 31 96-126 64-94 (313)
174 PF13747 DUF4164: Domain of un 37.0 1.5E+02 0.0032 20.9 7.8 20 101-120 53-72 (89)
175 PF15209 IL31: Interleukin 31 36.9 99 0.0021 24.0 5.1 29 94-123 64-92 (137)
176 PF06840 DUF1241: Protein of u 36.7 1.6E+02 0.0034 23.2 6.3 53 70-122 88-141 (154)
177 TIGR01797 CM_P_1 chorismate mu 36.7 40 0.00086 23.0 2.7 18 96-113 1-18 (83)
178 TIGR03513 GldL_gliding gliding 36.6 2.4E+02 0.0052 23.1 12.1 85 38-127 102-188 (202)
179 PF05008 V-SNARE: Vesicle tran 36.6 1.2E+02 0.0027 19.8 6.1 40 80-121 5-45 (79)
180 PHA02414 hypothetical protein 36.5 1.7E+02 0.0037 21.8 6.1 84 30-125 3-88 (111)
181 cd00890 Prefoldin Prefoldin is 36.4 1.5E+02 0.0033 20.8 6.3 41 94-134 87-127 (129)
182 PF13887 MRF_C1: Myelin gene r 36.2 40 0.00088 20.6 2.3 22 115-136 14-35 (36)
183 PF05929 Phage_GPO: Phage caps 36.1 2.3E+02 0.0049 24.2 7.7 40 37-90 172-211 (276)
184 COG4026 Uncharacterized protei 36.1 2.4E+02 0.0051 24.2 7.6 101 33-135 71-204 (290)
185 PHA02675 ORF104 fusion protein 35.9 1E+02 0.0023 22.2 4.8 30 106-135 35-64 (90)
186 PF04799 Fzo_mitofusin: fzo-li 35.4 2.3E+02 0.005 22.6 7.6 68 40-113 95-163 (171)
187 PF07888 CALCOCO1: Calcium bin 35.4 3.8E+02 0.0083 25.2 11.9 52 45-96 138-190 (546)
188 PF11083 Streptin-Immun: Lanti 35.4 73 0.0016 23.5 4.0 19 103-121 72-90 (99)
189 TIGR00634 recN DNA repair prot 35.2 2.6E+02 0.0056 25.4 8.4 13 73-85 279-291 (563)
190 PF11853 DUF3373: Protein of u 35.2 33 0.00073 31.5 2.7 29 100-128 30-58 (489)
191 KOG0977|consensus 35.1 3.9E+02 0.0084 25.1 13.3 82 48-132 47-130 (546)
192 cd04789 HTH_Cfa Helix-Turn-Hel 34.5 85 0.0018 22.1 4.2 27 98-124 75-101 (102)
193 PF14131 DUF4298: Domain of un 34.4 1.4E+02 0.0029 20.9 5.2 33 91-123 7-39 (90)
194 cd07664 BAR_SNX2 The Bin/Amphi 34.2 1.4E+02 0.0029 24.6 5.9 47 83-129 6-57 (234)
195 cd00193 t_SNARE Soluble NSF (N 33.9 1.1E+02 0.0023 18.3 6.6 20 94-113 27-46 (60)
196 PF14257 DUF4349: Domain of un 33.7 2.5E+02 0.0055 22.6 7.5 21 70-90 131-151 (262)
197 PRK01203 prefoldin subunit alp 33.5 1.4E+02 0.003 22.8 5.4 36 94-129 7-42 (130)
198 PF11083 Streptin-Immun: Lanti 33.5 1.1E+02 0.0025 22.5 4.8 24 105-128 67-90 (99)
199 PRK15326 type III secretion sy 32.9 95 0.0021 22.0 4.1 30 49-78 44-73 (80)
200 cd04783 HTH_MerR1 Helix-Turn-H 32.8 1.6E+02 0.0034 21.3 5.5 33 96-128 78-111 (126)
201 PF00170 bZIP_1: bZIP transcri 32.8 1.4E+02 0.0029 19.2 5.8 34 101-134 26-59 (64)
202 PF07889 DUF1664: Protein of u 32.5 2.2E+02 0.0048 21.5 10.2 30 100-129 95-124 (126)
203 PRK04778 septation ring format 32.4 3.4E+02 0.0073 24.8 8.7 87 30-116 439-529 (569)
204 PF05615 THOC7: Tho complex su 32.3 2E+02 0.0044 21.0 8.3 70 52-124 58-128 (139)
205 PF09730 BicD: Microtubule-ass 32.3 4E+02 0.0086 25.9 9.3 26 68-93 363-389 (717)
206 PF08232 Striatin: Striatin fa 32.0 1.4E+02 0.003 22.5 5.2 37 98-134 29-65 (134)
207 cd07629 BAR_Atg20p The Bin/Amp 32.0 2.5E+02 0.0054 22.0 8.1 30 61-90 23-52 (187)
208 KOG0995|consensus 31.7 4.6E+02 0.0099 24.9 9.4 83 41-123 202-288 (581)
209 COG4942 Membrane-bound metallo 31.5 3.1E+02 0.0068 24.9 8.1 35 54-88 42-76 (420)
210 cd07622 BAR_SNX4 The Bin/Amphi 31.4 2.7E+02 0.0059 22.2 7.5 72 41-129 16-88 (201)
211 KOG4117|consensus 31.3 1.8E+02 0.0039 20.2 5.6 45 43-90 16-60 (73)
212 PF10393 Matrilin_ccoil: Trime 31.3 82 0.0018 20.1 3.3 18 112-129 24-41 (47)
213 PRK09239 chorismate mutase; Pr 31.1 68 0.0015 23.2 3.3 23 91-113 7-29 (104)
214 PF06009 Laminin_II: Laminin D 31.0 16 0.00035 27.3 0.0 21 99-119 50-70 (138)
215 PF05377 FlaC_arch: Flagella a 30.9 1.5E+02 0.0033 19.5 4.6 16 98-113 25-40 (55)
216 PRK13182 racA polar chromosome 30.8 2.6E+02 0.0056 22.1 6.8 26 96-121 120-145 (175)
217 PRK09343 prefoldin subunit bet 30.8 2E+02 0.0044 21.0 5.9 44 91-135 55-98 (121)
218 PF04011 LemA: LemA family; I 30.7 2.5E+02 0.0054 21.6 8.9 17 35-51 48-64 (186)
219 PF14782 BBS2_C: Ciliary BBSom 30.7 3E+02 0.0066 24.8 7.9 58 55-113 343-401 (431)
220 PF09340 NuA4: Histone acetylt 30.6 1.3E+02 0.0029 20.7 4.6 26 96-121 4-29 (80)
221 PF01997 Translin: Translin fa 30.3 2.7E+02 0.0058 21.8 7.5 76 43-120 114-195 (200)
222 KOG4674|consensus 30.1 7.4E+02 0.016 26.9 12.1 52 42-93 1152-1204(1822)
223 PF04740 LXG: LXG domain of WX 30.1 2.5E+02 0.0054 21.4 10.3 16 113-128 175-190 (204)
224 TIGR02976 phageshock_pspB phag 29.9 1E+02 0.0022 21.4 3.8 27 92-118 40-66 (75)
225 PF14591 AF0941-like: AF0941-l 29.8 1.1E+02 0.0023 23.6 4.3 30 107-136 64-93 (127)
226 COG4026 Uncharacterized protei 29.7 3.5E+02 0.0076 23.2 7.6 68 51-121 143-211 (290)
227 KOG4025|consensus 29.7 2.3E+02 0.005 23.2 6.3 53 69-121 91-144 (207)
228 cd04786 HTH_MerR-like_sg7 Heli 29.6 94 0.002 23.0 3.9 33 97-129 81-113 (131)
229 COG0497 RecN ATPase involved i 29.6 4.1E+02 0.009 25.0 8.8 55 62-120 299-354 (557)
230 COG5374 Uncharacterized conser 29.5 77 0.0017 25.9 3.6 80 29-135 87-170 (192)
231 PF13805 Pil1: Eisosome compon 29.4 3.6E+02 0.0078 23.0 11.5 17 74-90 96-112 (271)
232 PF11471 Sugarporin_N: Maltopo 29.2 1.6E+02 0.0035 19.4 4.6 31 105-135 29-59 (60)
233 PHA01750 hypothetical protein 29.1 2E+02 0.0044 20.0 5.8 17 33-49 11-27 (75)
234 PF10152 DUF2360: Predicted co 28.9 1E+02 0.0022 23.4 4.1 26 108-133 21-46 (148)
235 TIGR01005 eps_transp_fam exopo 28.7 4.9E+02 0.011 24.3 9.7 40 71-110 288-332 (754)
236 KOG0996|consensus 28.7 3E+02 0.0065 28.5 8.1 64 74-137 785-849 (1293)
237 smart00338 BRLZ basic region l 28.6 1.6E+02 0.0035 18.8 5.5 26 103-128 28-53 (65)
238 KOG4191|consensus 28.5 4.9E+02 0.011 24.3 10.1 92 28-132 373-468 (516)
239 PF00407 Bet_v_1: Pathogenesis 28.3 66 0.0014 24.3 2.9 39 12-50 109-150 (151)
240 KOG4117|consensus 28.2 2.1E+02 0.0045 19.9 5.3 45 76-120 14-60 (73)
241 PRK14067 exodeoxyribonuclease 28.2 50 0.0011 23.1 2.1 23 106-128 30-52 (80)
242 PRK14064 exodeoxyribonuclease 28.1 49 0.0011 22.8 2.0 14 107-120 30-43 (75)
243 PF10280 Med11: Mediator compl 28.1 1.8E+02 0.0039 21.2 5.1 30 97-126 2-32 (117)
244 cd08317 Death_ank Death domain 27.9 1.6E+02 0.0035 19.8 4.6 52 73-126 4-57 (84)
245 PF11221 Med21: Subunit 21 of 27.7 2.6E+02 0.0057 20.9 13.1 104 31-135 10-142 (144)
246 KOG0810|consensus 27.5 1E+02 0.0023 26.4 4.3 34 94-127 33-66 (297)
247 PRK05431 seryl-tRNA synthetase 27.4 2.8E+02 0.0061 24.5 7.1 52 70-121 41-93 (425)
248 PF12329 TMF_DNA_bd: TATA elem 27.4 2E+02 0.0044 19.5 8.1 38 98-135 30-67 (74)
249 KOG2909|consensus 27.3 3E+02 0.0065 24.7 7.1 71 35-118 64-138 (381)
250 PF14584 DUF4446: Protein of u 27.1 2.9E+02 0.0064 21.3 6.7 27 96-122 48-74 (151)
251 TIGR02044 CueR Cu(I)-responsiv 27.0 1.5E+02 0.0033 21.4 4.6 29 98-126 83-111 (127)
252 PF05478 Prominin: Prominin; 27.0 2E+02 0.0042 27.6 6.4 113 21-136 572-688 (806)
253 cd07666 BAR_SNX7 The Bin/Amphi 26.9 3.7E+02 0.0081 22.4 8.9 30 91-120 51-80 (243)
254 PF12998 ING: Inhibitor of gro 26.4 2.1E+02 0.0046 19.4 5.4 31 83-113 3-34 (105)
255 PRK06034 hypothetical protein; 26.2 64 0.0014 27.6 2.8 21 93-113 8-28 (279)
256 cd07629 BAR_Atg20p The Bin/Amp 26.1 3.2E+02 0.007 21.4 7.4 60 75-134 23-86 (187)
257 KOG4552|consensus 26.1 4.1E+02 0.0088 22.5 9.7 45 91-135 54-101 (272)
258 PF03114 BAR: BAR domain; Int 26.0 2.8E+02 0.006 20.6 13.7 100 30-129 35-156 (229)
259 COG3416 Uncharacterized protei 26.0 1.3E+02 0.0028 25.2 4.4 74 55-136 2-76 (233)
260 COG1792 MreC Cell shape-determ 26.0 3.8E+02 0.0082 22.5 7.4 55 74-128 52-107 (284)
261 TIGR00293 prefoldin, archaeal 26.0 2.5E+02 0.0054 20.0 5.9 26 97-122 9-34 (126)
262 TIGR00414 serS seryl-tRNA synt 26.0 3.1E+02 0.0068 24.2 7.1 51 71-121 44-96 (418)
263 KOG3684|consensus 25.9 3.9E+02 0.0084 24.8 7.8 61 59-119 396-459 (489)
264 COG1722 XseB Exonuclease VII s 25.9 80 0.0017 22.1 2.8 15 107-121 13-27 (81)
265 PRK00578 prfB peptide chain re 25.9 4.4E+02 0.0096 23.3 8.0 30 31-63 7-36 (367)
266 COG2433 Uncharacterized conser 25.8 6.1E+02 0.013 24.5 10.3 31 105-135 478-508 (652)
267 COG3879 Uncharacterized protei 25.5 4.2E+02 0.009 22.4 8.6 54 36-90 30-83 (247)
268 PRK11199 tyrA bifunctional cho 25.5 72 0.0016 27.5 3.0 20 94-113 3-22 (374)
269 PF12207 DUF3600: Domain of un 25.3 90 0.002 24.8 3.2 35 91-127 84-118 (162)
270 cd07307 BAR The Bin/Amphiphysi 25.2 2.5E+02 0.0055 19.9 12.6 56 74-129 57-119 (194)
271 PF13815 Dzip-like_N: Iguana/D 25.2 2.7E+02 0.0058 20.1 6.1 36 101-136 80-115 (118)
272 KOG0161|consensus 25.1 9.2E+02 0.02 26.3 11.8 90 45-134 903-997 (1930)
273 TIGR03185 DNA_S_dndD DNA sulfu 25.0 5.5E+02 0.012 23.7 12.9 19 110-128 482-500 (650)
274 KOG0860|consensus 24.9 3.1E+02 0.0067 20.7 7.1 41 80-120 42-83 (116)
275 COG1345 FliD Flagellar capping 24.9 5.4E+02 0.012 23.5 9.5 106 29-134 373-480 (483)
276 PF02346 Vac_Fusion: Chordopox 24.8 2.1E+02 0.0047 18.9 4.9 21 108-128 29-49 (57)
277 PRK14063 exodeoxyribonuclease 24.6 64 0.0014 22.2 2.1 23 106-128 28-50 (76)
278 TIGR00237 xseA exodeoxyribonuc 24.6 5E+02 0.011 23.0 12.9 48 16-63 243-290 (432)
279 PRK14068 exodeoxyribonuclease 24.3 64 0.0014 22.3 2.0 23 106-128 29-51 (76)
280 PF14643 DUF4455: Domain of un 24.1 5.2E+02 0.011 23.1 10.8 78 54-131 364-460 (473)
281 KOG4438|consensus 24.1 5.7E+02 0.012 23.5 8.9 64 71-135 286-350 (446)
282 TIGR02977 phageshock_pspA phag 24.0 3.7E+02 0.008 21.4 11.1 38 99-136 90-127 (219)
283 KOG0612|consensus 23.9 6.4E+02 0.014 26.3 9.4 40 95-134 568-607 (1317)
284 PRK14066 exodeoxyribonuclease 23.9 66 0.0014 22.2 2.0 23 106-128 27-49 (75)
285 PRK05724 acetyl-CoA carboxylas 23.9 1.6E+02 0.0035 25.5 4.9 19 72-90 4-22 (319)
286 PF01865 PhoU_div: Protein of 23.9 2.1E+02 0.0044 22.1 5.1 54 71-124 47-105 (214)
287 PF00038 Filament: Intermediat 23.8 4E+02 0.0087 21.7 13.1 18 23-40 157-174 (312)
288 TIGR01149 mtrG N5-methyltetrah 23.8 94 0.002 21.6 2.7 18 94-111 12-29 (70)
289 TIGR02047 CadR-PbrR Cd(II)/Pb( 23.3 1.7E+02 0.0037 21.3 4.3 28 99-126 84-111 (127)
290 PF11460 DUF3007: Protein of u 23.1 1.5E+02 0.0033 22.0 3.9 18 98-115 63-80 (104)
291 PF02388 FemAB: FemAB family; 22.9 4.3E+02 0.0093 23.0 7.3 19 54-72 191-209 (406)
292 cd04775 HTH_Cfa-like Helix-Tur 22.9 1.7E+02 0.0038 20.4 4.1 26 98-123 75-100 (102)
293 COG0216 PrfA Protein chain rel 22.8 5.6E+02 0.012 23.0 8.8 11 93-103 52-62 (363)
294 cd01106 HTH_TipAL-Mta Helix-Tu 22.7 2.2E+02 0.0047 19.7 4.6 27 96-122 75-101 (103)
295 PF06248 Zw10: Centromere/kine 22.7 5.9E+02 0.013 23.2 8.7 18 30-47 9-26 (593)
296 PF12269 zf-CpG_bind_C: CpG bi 22.7 2.6E+02 0.0056 23.5 5.6 36 100-135 28-63 (236)
297 PF04091 Sec15: Exocyst comple 22.7 4.2E+02 0.0092 22.4 7.1 31 98-128 90-120 (311)
298 PF04111 APG6: Autophagy prote 22.5 4.3E+02 0.0093 22.5 7.1 8 48-55 14-21 (314)
299 TIGR00513 accA acetyl-CoA carb 22.5 1.8E+02 0.0039 25.2 4.9 42 72-113 4-47 (316)
300 PRK13729 conjugal transfer pil 22.5 2.8E+02 0.0062 25.6 6.3 20 71-90 69-88 (475)
301 PF12443 AKNA: AT-hook-contain 22.5 1.5E+02 0.0033 22.0 3.8 29 109-137 46-74 (106)
302 KOG4593|consensus 22.3 5.8E+02 0.012 24.9 8.4 20 110-129 435-454 (716)
303 COG4477 EzrA Negative regulato 22.2 6.8E+02 0.015 23.8 9.2 64 67-136 371-435 (570)
304 COG1196 Smc Chromosome segrega 22.2 8E+02 0.017 24.5 12.0 89 48-136 812-905 (1163)
305 cd07671 F-BAR_PSTPIP1 The F-BA 22.1 4.4E+02 0.0096 21.5 11.5 108 18-135 2-112 (242)
306 PRK01026 tetrahydromethanopter 22.1 1E+02 0.0023 21.7 2.7 18 94-111 15-32 (77)
307 cd01282 HTH_MerR-like_sg3 Heli 22.0 1.8E+02 0.0039 20.7 4.1 27 97-123 84-110 (112)
308 PF05816 TelA: Toxic anion res 22.0 5E+02 0.011 22.1 11.6 96 32-129 27-137 (333)
309 PF07586 HXXSHH: Protein of un 22.0 2E+02 0.0044 23.8 5.0 24 94-117 184-207 (302)
310 PF03961 DUF342: Protein of un 22.0 5.5E+02 0.012 22.6 9.2 13 31-43 330-342 (451)
311 KOG0980|consensus 21.9 8.4E+02 0.018 24.7 9.6 67 70-136 409-480 (980)
312 PF10372 YojJ: Bacterial membr 21.9 2.4E+02 0.0052 19.4 4.4 45 77-123 20-66 (70)
313 PF14643 DUF4455: Domain of un 21.8 5.8E+02 0.013 22.8 10.1 58 74-134 337-396 (473)
314 PF00435 Spectrin: Spectrin re 21.8 2.2E+02 0.0048 18.0 7.6 19 72-90 42-60 (105)
315 PRK12595 bifunctional 3-deoxy- 21.8 93 0.002 27.1 3.0 32 94-125 4-39 (360)
316 PRK10697 DNA-binding transcrip 21.8 1.7E+02 0.0037 21.9 4.0 34 100-133 80-117 (118)
317 KOG3251|consensus 21.7 1.4E+02 0.0031 24.7 3.9 59 73-131 5-63 (213)
318 PF00957 Synaptobrevin: Synapt 21.7 2.6E+02 0.0057 18.8 7.4 29 102-130 32-60 (89)
319 PF09738 DUF2051: Double stran 21.6 5.2E+02 0.011 22.2 7.8 33 91-123 102-134 (302)
320 PRK09343 prefoldin subunit bet 21.6 3.3E+02 0.0072 19.9 6.6 44 91-134 68-111 (121)
321 PF04012 PspA_IM30: PspA/IM30 21.6 4E+02 0.0086 20.8 13.2 40 97-136 87-126 (221)
322 COG3883 Uncharacterized protei 21.6 5.1E+02 0.011 22.1 8.6 32 101-132 59-90 (265)
323 cd07639 BAR_ACAP1 The Bin/Amph 21.5 4.4E+02 0.0095 21.3 9.2 103 27-130 8-120 (200)
324 KOG1937|consensus 21.5 6.8E+02 0.015 23.4 9.6 58 78-135 366-423 (521)
325 PRK15039 transcriptional repre 21.2 1.7E+02 0.0038 20.8 3.8 28 99-127 11-38 (90)
326 KOG0612|consensus 21.1 7.8E+02 0.017 25.8 9.4 39 94-132 494-532 (1317)
327 PRK13922 rod shape-determining 21.0 4.5E+02 0.0098 21.3 9.7 28 100-127 82-109 (276)
328 KOG0161|consensus 21.0 1.1E+03 0.024 25.8 12.2 89 45-135 1451-1539(1930)
329 COG0497 RecN ATPase involved i 21.0 6.2E+02 0.013 23.9 8.2 24 78-101 266-290 (557)
330 PRK14162 heat shock protein Gr 20.9 2.4E+02 0.0052 22.7 5.0 35 101-135 39-73 (194)
331 PF06810 Phage_GP20: Phage min 20.9 2.6E+02 0.0057 21.4 5.1 12 102-113 35-46 (155)
332 PF12095 DUF3571: Protein of u 20.9 97 0.0021 22.1 2.4 40 82-121 28-68 (83)
333 TIGR02168 SMC_prok_B chromosom 20.9 7.3E+02 0.016 23.6 14.2 8 29-36 177-184 (1179)
334 PF00512 HisKA: His Kinase A ( 20.8 2.2E+02 0.0047 17.5 7.0 52 74-125 11-64 (68)
335 PRK13922 rod shape-determining 20.7 4.6E+02 0.01 21.2 7.0 54 74-127 48-102 (276)
336 PF05597 Phasin: Poly(hydroxya 20.7 3.8E+02 0.0083 20.3 8.2 25 31-55 13-38 (132)
337 PF12718 Tropomyosin_1: Tropom 20.6 3.8E+02 0.0083 20.2 10.9 19 116-134 109-127 (143)
338 smart00397 t_SNARE Helical reg 20.6 2.1E+02 0.0045 17.2 7.3 24 91-114 30-53 (66)
339 CHL00198 accA acetyl-CoA carbo 20.5 1.6E+02 0.0034 25.7 4.1 19 72-90 7-25 (322)
340 PRK10622 pheA bifunctional cho 20.5 1E+02 0.0022 27.1 3.0 20 94-113 5-24 (386)
341 PF13166 AAA_13: AAA domain 20.5 6.6E+02 0.014 23.0 14.0 32 28-59 265-296 (712)
342 PF12308 Noelin-1: Neurogenesi 20.5 2.8E+02 0.0061 20.5 4.8 10 81-90 50-59 (101)
343 cd01107 HTH_BmrR Helix-Turn-He 20.4 3.2E+02 0.0068 19.2 6.1 27 98-124 79-105 (108)
344 PRK06443 chorismate mutase; Va 20.3 1.1E+02 0.0023 24.7 2.8 19 95-113 6-24 (177)
345 PF08580 KAR9: Yeast cortical 20.2 5.9E+02 0.013 24.4 8.1 64 68-134 246-322 (683)
346 KOG1029|consensus 20.2 9.1E+02 0.02 24.5 10.9 42 47-88 483-524 (1118)
347 smart00150 SPEC Spectrin repea 20.1 2.5E+02 0.0053 17.8 6.8 6 125-130 80-85 (101)
No 1
>KOG4559|consensus
Probab=100.00 E-value=1.4e-36 Score=223.05 Aligned_cols=117 Identities=42% Similarity=0.640 Sum_probs=113.6
Q ss_pred cccccCCccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8908 7 NSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFS 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~ 86 (137)
.+++.+||||| |.++||++..|+|+|++||..||.|+.+|+++||++..+||+|||.||++++.||.+|+++|..+..+
T Consensus 2 ~d~~e~a~Tls-Sa~~~~a~~~~~PhirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k 80 (120)
T KOG4559|consen 2 ADINEHAPTLS-SAPPFEALPAHDPHIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGK 80 (120)
T ss_pred CCccccCCccc-CCCCCcCCCCCCccHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 46789999998 55789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 87 SARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 87 ~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
+..| +||+.|.||++|||.|++++++||+++++||.|+
T Consensus 81 ~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld~Y~ 119 (120)
T KOG4559|consen 81 LDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLDAYS 119 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 9999 9999999999999999999999999999999997
No 2
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=100.00 E-value=3.9e-36 Score=216.19 Aligned_cols=98 Identities=46% Similarity=0.722 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHH
Q psy8908 37 ATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 37 a~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~ 115 (137)
|++||++++.||+||+++|.+||+|||+||++++.||.+|+++++++++++++| ++|++|+||++|||+||++|++||+
T Consensus 1 ~~~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 1 AERMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8908 116 AAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 116 ~a~~LD~Ysk~LE~K~k~l 134 (137)
+|++||+||++||+|||+|
T Consensus 81 ~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 81 TVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975
No 3
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=95.15 E-value=0.96 Score=35.17 Aligned_cols=84 Identities=8% Similarity=0.069 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHH
Q psy8908 31 PRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDS 109 (137)
Q Consensus 31 ~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~ 109 (137)
..+.+.-+.|+.++..-|++=...|.+..+....-... +.+.+..--+.+-.| .+-++|..-++.+..+-.+
T Consensus 62 ~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~-------~cdsvD~sik~~y~liakceELn~~M~~v~~La~q 134 (149)
T PF10157_consen 62 QAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDK-------LCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQ 134 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777555666666555544332 333333333334445 5555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy8908 110 VLKLEQAAYKLD 121 (137)
Q Consensus 110 V~~LE~~a~~LD 121 (137)
|..+=..+..||
T Consensus 135 IK~Ik~~lD~lE 146 (149)
T PF10157_consen 135 IKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 4
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=93.92 E-value=1.4 Score=33.50 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=59.7
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hh
Q psy8908 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PA 92 (137)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~k 92 (137)
..|-.|++||-+.+ +.=+.+++..-..+|+-|++ .-..+|...++.+..+...+..+ ..
T Consensus 8 ~~lllss~sfaA~~-----------------~~~v~~~l~~LEae~q~L~~---kE~~r~~~~k~~ae~a~~~L~~~~~~ 67 (126)
T PF09403_consen 8 GMLLLSSISFAATA-----------------TASVESELNQLEAEYQQLEQ---KEEARYNEEKQEAEAAEAELAELKEL 67 (126)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc-----------------chHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887743 33344556666777777665 45678999999999999999999 99
Q ss_pred hHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 93 YKQLIPQLEQIDQIYDS---VLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~---V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
|.+...-+..|-+..+- =.+.-.++.+-+.|-+.|+.+++.-|
T Consensus 68 ~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 68 YAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777776554321 13455566666666666666665544
No 5
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.61 E-value=5.6 Score=31.35 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|-.++..++.++..++..+.+|..-...|+.|+..++
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555554
No 6
>PRK10698 phage shock protein PspA; Provisional
Probab=89.86 E-value=9.4 Score=30.98 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.|-.+|..++.++...+..+.+|-.-..+|+.|+..+..
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888888888887654
No 7
>KOG0980|consensus
Probab=88.50 E-value=6.5 Score=38.62 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQL----EQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl----~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.+..-++=+++++.+.-.+|.+++..-..+...=.+| .||......+ +-||+.++....|...+-+++.-..++|
T Consensus 407 ka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~ 486 (980)
T KOG0980|consen 407 KAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE 486 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443356678889999999999999999999998889 9998765544 5678888888888888888887777777
Q ss_pred HHHHhh
Q psy8908 129 AKFKQL 134 (137)
Q Consensus 129 ~K~k~l 134 (137)
.|....
T Consensus 487 ~K~e~~ 492 (980)
T KOG0980|consen 487 TKTESQ 492 (980)
T ss_pred HhhHHH
Confidence 766544
No 8
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=88.38 E-value=3.2 Score=29.34 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 40 MFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 40 mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
||+++-.-+. .++.+.++.++|=+|-+..-.-|.-++.-.-++-..+. +.-.-||+++|.+|-+.++.
T Consensus 1 MFEkid~I~k-~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~-----------~~~~~QideeV~~LKe~Ida 68 (79)
T PF10398_consen 1 MFEKIDLILK-NIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLN-----------MAFLAQIDEEVEKLKEHIDA 68 (79)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCccccc-----------HHHHHHHHHHHHHHHHHHHH
Confidence 7888876654 68899999999999999999999988765444432221 12234677899999999999
Q ss_pred HHHHHHHH
Q psy8908 120 LDHYAKRL 127 (137)
Q Consensus 120 LD~Ysk~L 127 (137)
|..|-+++
T Consensus 69 LNK~KkE~ 76 (79)
T PF10398_consen 69 LNKIKKEL 76 (79)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 99887653
No 9
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=86.12 E-value=9.8 Score=34.83 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=76.0
Q ss_pred CcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHH
Q psy8908 21 SSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQ 99 (137)
Q Consensus 21 ~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~py 99 (137)
+...|..|+||++.++..-+- +=|--+-+..--|..=-.....+...+.-.-..+..+++.= |-.++|+.|
T Consensus 97 ~pt~~w~~ddpDi~~~l~gvn--------SGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgy 168 (558)
T PF15358_consen 97 SPTPPWAPDDPDITELLEGVN--------SGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGY 168 (558)
T ss_pred CCCCCCCCCCccHHHHHhhhc--------ccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHH
Confidence 445667778888877654322 11112222222233323445567777888888888888888 888999999
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 100 LEQID----QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 100 l~qID----~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..|+. .+..+|..-|.-++.|-+-+-.||.|++-|++
T Consensus 169 CsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~ 209 (558)
T PF15358_consen 169 CSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQ 209 (558)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 99876 47788888899999999999999999998764
No 10
>PRK11637 AmiB activator; Provisional
Probab=84.39 E-value=27 Score=30.43 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHH---HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 58 DYEVLEKMNNAT---ITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQ----IDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 58 dy~LLE~mN~~~---s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~q----ID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
|.++|+.+.... .....++......+......+ .....|+.-.++ ++.++.+....++.+.+|.+-.++|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444322 222333333333334444444 333333333333 556666666666666666666666666
Q ss_pred HHHhhh
Q psy8908 130 KFKQLE 135 (137)
Q Consensus 130 K~k~le 135 (137)
.+++++
T Consensus 248 ~I~~l~ 253 (428)
T PRK11637 248 SIARAE 253 (428)
T ss_pred HHHHHH
Confidence 665554
No 11
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.09 E-value=5.1 Score=26.89 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
+|.+++.+..||..-..+|.-.+.+..+++++
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 12
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=82.43 E-value=9.6 Score=30.69 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhHHHHHH-------------HHHhhhhhh-hhhHh---------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 63 EKMNNATITKYSDMKQITV-------------NISFSSARV-PAYKQ---------LIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 63 E~mN~~~s~kY~~m~~~a~-------------~l~~~~~~L-~ky~~---------l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
.+++.+....+..+...-. |+...+.++ ..|-. ...+=.+|+.|++++..+|. +
T Consensus 139 ~kl~~Al~~np~~V~~lF~~~~~~~~~~~~~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~---r 215 (239)
T PF07195_consen 139 TKLDKALAENPDAVQALFAGDGTKDGTVYSTSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEE---R 215 (239)
T ss_pred HHHHHHHhhCHHHHHHHHccCccccccccccccHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3455666666666666633 344444444 43332 23444566666666666654 5
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy8908 120 LDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 120 LD~Ysk~LE~K~k~le~ 136 (137)
|+.+-.+|..+|-+||.
T Consensus 216 l~~~~~~l~~qf~~me~ 232 (239)
T PF07195_consen 216 LESKEERLRKQFSAMES 232 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888888888888874
No 13
>PRK09039 hypothetical protein; Validated
Probab=82.36 E-value=27 Score=30.06 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhh-------hHHHHHHHHHhhhhhh-hhhHh----hHHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYS-------DMKQITVNISFSSARV-PAYKQ----LIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~-------~m~~~a~~l~~~~~~L-~ky~~----l~pyl~qID~Ie~~V~~LE~ 115 (137)
++.++..-..+|.-++........-|. .+..-+..+...+... ..|.+ +.-.-+||..+..++..||.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444333333 4455556666666655 55554 55556788889999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy8908 116 AAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 116 ~a~~LD~Ysk~LE~K~k~le~ 136 (137)
....+..-.+....++..+++
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777777776654
No 14
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=80.74 E-value=9.1 Score=29.00 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..|.+-+++|+.+++.+.+.|.+...--.|.++||.+.+.+++
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999888764
No 15
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=80.46 E-value=13 Score=32.70 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=63.2
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
|.-++++-.++.++|++||+--.....++.+-+..|+..+-.= .-.+..+.|-.||-++-+.-..||-=..+
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELAR 84 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELAR 84 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999888887 88888999999999999888888864433
No 16
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.96 E-value=44 Score=28.67 Aligned_cols=87 Identities=8% Similarity=0.190 Sum_probs=39.8
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh---------------h-hhhHhhHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSAR---------------V-PAYKQLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~---------------L-~ky~~l~pyl~qID~Ie~~V~ 111 (137)
|+.+-..-..+.+++..+=-....+|..+...+..+...... | ....++....++|.+.++++.
T Consensus 156 l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555544443333 2 223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 112 KLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 112 ~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.++..+...-.=..++...+.++
T Consensus 236 ~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 236 ELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444434444433333
No 17
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=77.39 E-value=5.8 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhh-hhhHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 79 ITVNISFSSARV-PAYKQL-IPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 79 ~a~~l~~~~~~L-~ky~~l-~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
.+.-+..-++++ .|+..+ ...+.+||+...+|..||+.+..|
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444555666 666663 456788888888888888887655
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.75 E-value=38 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=35.9
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHH
Q psy8908 51 ELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQL 100 (137)
Q Consensus 51 El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl 100 (137)
.+.....-++.|++-+.....+-..+..-+..+...+.+. .+|.+...-+
T Consensus 72 ~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl 122 (237)
T PF00261_consen 72 RADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL 122 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567788877777888888888888888888877 7777765554
No 19
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.35 E-value=42 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
.+..+.+.++.++.++.+++.-...+..=.++++.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443333333333
No 20
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=76.31 E-value=7.9 Score=33.68 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.-..|+++|+.|+.||+-+..++.-.+.++.+++.+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l 177 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKL 177 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345677777777777666666665555554444433
No 21
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=75.87 E-value=41 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
.|..-+..|..++..|..|+..|+.=+
T Consensus 256 ~l~~~l~~l~~~~~~l~~~~~~l~~~l 282 (291)
T TIGR00996 256 NLPQALANLAPVLTLLVDYHPELEQLL 282 (291)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 334444455555555555555555443
No 22
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=74.88 E-value=14 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=18.9
Q ss_pred hhhhh-hhhHhhHHHHHHHHHHHHHH
Q psy8908 86 SSARV-PAYKQLIPQLEQIDQIYDSV 110 (137)
Q Consensus 86 ~~~~L-~ky~~l~pyl~qID~Ie~~V 110 (137)
.+.+| ++|..|..+++++-+|..+|
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677 77777778887777777777
No 23
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=73.88 E-value=25 Score=31.33 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHHHHHHHh-------hhhhcchh-H---HHHH-HHHHHHHHHHhhhHHHHHH------HHHhhhhhh
Q psy8908 29 HDPRLNELATNMFKKTADYLI-------GELSSTQA-D---YEVL-EKMNNATITKYSDMKQITV------NISFSSARV 90 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~-------~El~~t~~-d---y~LL-E~mN~~~s~kY~~m~~~a~------~l~~~~~~L 90 (137)
-|..++.+...|-.-+..-+. +++-.+.. . +.|= .+++++...++......-. |+...+.++
T Consensus 314 gDs~l~~i~~~Lr~~~~~~~~~~~~~~L~~iGI~~~~~~G~L~lD~~kl~~al~~np~~V~~lF~~~~~~~G~~~~l~~~ 393 (462)
T PRK08032 314 GDSTLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIATN 393 (462)
T ss_pred CcHHHHHHHHHHHHHHhcccCCcccccHHHcCeeccCCCCeEEEcHHHHHHHHHHCHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 456666666666655544322 22222222 0 1111 2566666666666665432 333333333
Q ss_pred -hhh----Hhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 91 -PAY----KQL----IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 91 -~ky----~~l----~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..| .-+ ..|-.+|+.|++++..|+. +|+.+-.+|..+|-+||.
T Consensus 394 l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~ 445 (462)
T PRK08032 394 LKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDK 445 (462)
T ss_pred HHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 222 112 3456677788887777775 667777788888888764
No 24
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.38 E-value=32 Score=27.84 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQA 116 (137)
Q Consensus 102 qID~Ie~~V~~LE~~ 116 (137)
.|+.++.++..++.+
T Consensus 85 el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 85 ELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 25
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=72.29 E-value=38 Score=25.22 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 61 VLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 61 LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
|...+|..++.=|..-+.+-.......... ..+..-..++.-+|.+...+-+| .-++.|.+.+|..++.|+
T Consensus 34 l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi----GDveNWa~~iE~Dl~~i~ 105 (121)
T PF06320_consen 34 LVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI----GDVENWAEMIERDLRVIE 105 (121)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHH
Confidence 344457777766666555543333333333 33333445555566666655554 556788888888887765
No 26
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=71.49 E-value=17 Score=29.60 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8908 61 VLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLE----QIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 61 LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~----qID~Ie~~V~~LE~~a~~LD~ 122 (137)
.|++||--+..--..+...+.+|+..+..+ ..+..+-.++. |=-.....|++||+=+..||.
T Consensus 62 YLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~ 128 (189)
T TIGR02132 62 YLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK 128 (189)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence 456666555555556666677777777777 55555444444 555666777777766655543
No 27
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.71 E-value=16 Score=24.51 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
.|+++|.+++-+|.++..|+.-+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 28
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=3.7 Score=31.81 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 76 MKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 76 m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+..+..+|+...-.= ...+.+..+=++|++|++.+.+|++...+|+.+..+|+.....+.
T Consensus 75 ~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 75 MDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred CceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 455678888899999999999999999999999999998877664
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.21 E-value=67 Score=27.22 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=15.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhh
Q psy8908 29 HDPRLNELATNMFKKTADYLIGE 51 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~E 51 (137)
.+|+.+.+-..-|..|-.|-..+
T Consensus 112 a~~d~r~~m~~q~~~vK~~aRl~ 134 (325)
T PF08317_consen 112 ADPDMRLLMDNQFQLVKTYARLE 134 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777775544
No 30
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=69.70 E-value=37 Score=24.08 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=35.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIY-------DSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie-------~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
++...|.=+...=.........+ ..-..+...++++++.. ++|..+|+-|..|+.=+.+|..-.++||.
T Consensus 18 ~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 18 ATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444455555 55555555555544433 34444555555555555555555555554
No 31
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.18 E-value=73 Score=27.31 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhcchhHH--HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh
Q psy8908 29 HDPRLNELATNMFKKTADYLIGELSSTQADY--EVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL 96 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy--~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l 96 (137)
.+|+.+.+-..=|..|-+|-..+--+.==+| +||+.|=..-..++..|..-..-|.+..+.+ ...+.+
T Consensus 107 a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l 177 (312)
T smart00787 107 ASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKL 177 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888889999888776655433222 3566666666666666666555555555544 444433
No 32
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=68.47 E-value=12 Score=32.57 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+..-=+.|..+|+.+..+++.+..+..-.+.|+.++..+|-
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 355555778889999999999999998888889988888764
No 33
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=67.87 E-value=36 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHH
Q psy8908 75 DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~L 113 (137)
+..+.......-.++. .|-+.+.|.++.+.++.+.|..|
T Consensus 48 e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 48 EINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555 55555566666666665555554
No 34
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.61 E-value=14 Score=25.66 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 79 ITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 79 ~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
.+.++......| .|....+.++..+.+|+.+|.+-|+-+..|.+.....-.-+..
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777 7777777888888888888888777777777766555443333
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.23 E-value=94 Score=27.42 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
+....+.+..++..|..||..+..+..=-++|+.+++++
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 445566666666666666666665555555555555554
No 36
>PRK00736 hypothetical protein; Provisional
Probab=65.95 E-value=22 Score=23.90 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
+.|+++|.+|+-.|.++..|+.-..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~ 29 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLA 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666655443
No 37
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.90 E-value=74 Score=26.13 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|-+++...+.++..+.+.+.+|-.=..+||.|+..+.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555543
No 38
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=65.49 E-value=24 Score=23.54 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=33.7
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
++.++......|...+..| .++...-... ++-..-=.+|+.++..+-.....+..+++.|++
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~---~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSP---DQDSELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666 5554432222 211233345556666666666666666666653
No 39
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=65.43 E-value=44 Score=31.39 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH-------HHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhH
Q psy8908 26 MISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMN-------NATITKYSDMKQITVNISFSSARV-PAYKQLI 97 (137)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN-------~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~ 97 (137)
.++.|+--.+..-.=|-.++.+|++++.--..++.++..=| +-.-.+|-++...-..+...+.-. .....++
T Consensus 272 ~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~ 351 (582)
T COG5158 272 SDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQLRHKENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVE 351 (582)
T ss_pred CCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999998655 555667777777777777777777 7777766
Q ss_pred H-HHHHHHHHHHHHHHHHH
Q psy8908 98 P-QLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 98 p-yl~qID~Ie~~V~~LE~ 115 (137)
. |++.|-+||+.+.....
T Consensus 352 ~~~l~~f~eIEq~l~~~~~ 370 (582)
T COG5158 352 ERYLDDFSEIEQNLSTGND 370 (582)
T ss_pred HHHHHHHHHHHHhhhcCCc
Confidence 4 88889999988877664
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=64.81 E-value=39 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
+...+.|..|+..+..++..+..|+.-...+|.+.+++.+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~ 41 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK 41 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888887777654
No 41
>PHA03395 p10 fibrous body protein; Provisional
Probab=64.50 E-value=31 Score=24.85 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy8908 67 NATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~ 116 (137)
++...|...+.+...++..++.++ +..+.|...-.+++.|...|+.+..+
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~di 64 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDI 64 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 455666667777777777777777 77776777777777777666665543
No 42
>KOG0250|consensus
Probab=64.49 E-value=1.7e+02 Score=29.71 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHH-HHHHHH
Q psy8908 32 RLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQI-DQIYDS 109 (137)
Q Consensus 32 ~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qI-D~Ie~~ 109 (137)
+++.+.+++-.-.+.|+-+.+..-.-+|+.++..+.-.-.+-..+.+.+.........+ +++.+++.-++++ |..+.+
T Consensus 256 ~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 256 QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 45555666666677788888888888899999888888888888888888888888888 8888888777654 667777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8908 110 VLKLEQAAYKLDHYAK 125 (137)
Q Consensus 110 V~~LE~~a~~LD~Ysk 125 (137)
=.+++.+...||.+-+
T Consensus 336 d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRR 351 (1074)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888888888888876
No 43
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=64.37 E-value=79 Score=25.91 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=48.0
Q ss_pred ccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH---HHHhhhHHHHHHHHHhhhhhh-hhh
Q psy8908 18 TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNAT---ITKYSDMKQITVNISFSSARV-PAY 93 (137)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~---s~kY~~m~~~a~~l~~~~~~L-~ky 93 (137)
||+.+|+++..+..+= .+++..+..|++--..+=.+=-+-|.++.+.. ...|.-++..-..+...++.+ ..-
T Consensus 2 ~~~~Gy~~l~~r~~~g----~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H 77 (240)
T cd07672 2 TSTGGYDCIIQHLNDG----RKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSH 77 (240)
T ss_pred CCCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 7899999966655554 44556667777744333333335666666642 236666666666666666666 555
Q ss_pred HhhHHHHH
Q psy8908 94 KQLIPQLE 101 (137)
Q Consensus 94 ~~l~pyl~ 101 (137)
..|...|.
T Consensus 78 ~~la~~L~ 85 (240)
T cd07672 78 IQLAQTLR 85 (240)
T ss_pred HHHHHHHH
Confidence 55554444
No 44
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.90 E-value=1e+02 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred ccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy8908 16 LSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVL 62 (137)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LL 62 (137)
.+|.|-+=|..-|+..++.+-...+...+...++.-+......++-|
T Consensus 248 a~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L 294 (438)
T PRK00286 248 APTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQL 294 (438)
T ss_pred CCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888888877777777666665543
No 45
>PRK04325 hypothetical protein; Provisional
Probab=63.58 E-value=25 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
+.|+++|.+|+-.|.++..|+.-..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~ 33 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666655443
No 46
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=63.35 E-value=37 Score=23.52 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 75 DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+..+..++...+.++ -.|.+|+.-+++||.-- ....=+.++..|+.-.++||.|=..|-
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~-~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSL-GRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888 88888877777777744 445667788889999999998876654
No 47
>PRK14011 prefoldin subunit alpha; Provisional
Probab=63.16 E-value=29 Score=26.73 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=35.8
Q ss_pred hhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 88 ARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 88 ~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+.| ++...|+.|-+||..+..++..|..+..+++.-...|+
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356 77788999999999999999999999999988877776
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.11 E-value=79 Score=25.49 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARV-PAYK----QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~----~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+.=-.....+...+..-...+..+++.| ..-. ....|=.+|..+..++...|.-+.....=++.||..+..|+
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555 2221 13445555555555555555555555555555555554443
No 49
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.98 E-value=86 Score=25.87 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=27.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
.+-.+-..++++|-+|...+..||.++.....=-.+....+
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777888888888888888877665544444443
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.94 E-value=27 Score=23.75 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
+.|+++|.+|+-.|.++..|+.-.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v 31 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTV 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666665555555555544
No 51
>KOG0804|consensus
Probab=62.75 E-value=1.3e+02 Score=27.84 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHH-HHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHH
Q psy8908 39 NMFK-KTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYD 108 (137)
Q Consensus 39 ~mf~-kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~ 108 (137)
.+|. .+..|.+++++.-..-|+++-.--......-.++...-..+++.+.++ .|.+.++.-++-+-++++
T Consensus 335 ~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 335 KYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 488888888888888888776655555666666666666666666666 666666655555544443
No 52
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=62.70 E-value=28 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+|+-|+..+.+-..=+..++...|.||.+.+.+|
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888888877765
No 53
>PRK06798 fliD flagellar capping protein; Validated
Probab=62.63 E-value=63 Score=28.87 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+-++|+.|++++..+|. +|+.+-.+|-.+|.+||.
T Consensus 383 ~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~ 418 (440)
T PRK06798 383 SIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLES 418 (440)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443 555666777777777764
No 54
>PRK00295 hypothetical protein; Provisional
Probab=62.44 E-value=28 Score=23.37 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
.|+++|.+|+-.|.++..|+.-.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v 28 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555444
No 55
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=62.09 E-value=1.1e+02 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8908 118 YKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 118 ~~LD~Ysk~LE~K~k~l 134 (137)
..+..+.+.||.|+.+|
T Consensus 371 ~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 371 ETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34445555555555544
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=62.08 E-value=1.4e+02 Score=27.99 Aligned_cols=7 Identities=57% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy8908 108 DSVLKLE 114 (137)
Q Consensus 108 ~~V~~LE 114 (137)
.++..++
T Consensus 252 ~~~~~l~ 258 (880)
T PRK03918 252 GSKRKLE 258 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 57
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=61.83 E-value=66 Score=25.61 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=68.1
Q ss_pred cccCCccccccCCcccCCCCCchHHHHHHHHHHHH---HHHHHhhhhhcch--hHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy8908 9 LSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKK---TADYLIGELSSTQ--ADYEVLEKMNNATITKYSDMKQITVNI 83 (137)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~mf~k---vs~Yl~~El~~t~--~dy~LLE~mN~~~s~kY~~m~~~a~~l 83 (137)
+-.|.-+.|+..+.-.+...|-.+|++.+.+-+-+ +-.|++-+=..+. ...+.- -...|.+...+-...
T Consensus 26 ~~~r~y~f~s~~~~i~~ii~h~NNlN~i~~r~~l~~~kl~sylGleKD~Se~~S~~K~P------f~~~~k~~~~ifkeg 99 (163)
T PF03233_consen 26 SNDRRYVFSSVKGNIQSIINHCNNLNEIVGRNWLKLSKLLSYLGLEKDPSEGLSKSKSP------FESFFKDLSKIFKEG 99 (163)
T ss_pred CCCceEEeecCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccCCccccccCCCc------HHHHHHHHHHHHHhc
Confidence 33455667777777888888999999999987665 5567775544443 111111 012233334443333
Q ss_pred Hhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q psy8908 84 SFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAA---YKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 84 ~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a---~~LD~Ysk~LE~K~k~l 134 (137)
+..-+.. ..-+.|+.-.++|+.|++++-.|+.-+ ..+..+.|.++.+++++
T Consensus 100 g~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I 154 (163)
T PF03233_consen 100 GGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEI 154 (163)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHH
Confidence 3333333 444556666668888888877765432 23344445555444444
No 58
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=60.43 E-value=49 Score=25.87 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
++-+++..+|..|.+-+..||.-++.+=.+++..+
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777777777777777777776666665544
No 59
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=60.21 E-value=1.3e+02 Score=27.09 Aligned_cols=96 Identities=8% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhh---hHhhHHHHHHHHHHHHHHHHH
Q psy8908 38 TNMFKKTADYLIGELSST-QADYEVLEKMNNATITKYSDMKQITVNISFSSARVPA---YKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 38 ~~mf~kvs~Yl~~El~~t-~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~k---y~~l~pyl~qID~Ie~~V~~L 113 (137)
..++.++..+-.+-++++ ....-.++.....-+.....+-..+.+|...+++|.+ .-..+|-..|+..+-..+..+
T Consensus 179 ~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a 258 (424)
T PF03915_consen 179 SSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRA 258 (424)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHH
Confidence 344555555444333333 3455666777776666677777777777777777722 234778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8908 114 EQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 114 E~~a~~LD~Ysk~LE~K~k~ 133 (137)
...+..+-.|.+.+.--.|+
T Consensus 259 ~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 259 SKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHH
Confidence 88888777766655544443
No 60
>PRK07737 fliD flagellar capping protein; Validated
Probab=60.14 E-value=76 Score=28.73 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
=++|+.|++++..||. +|+.+-.+|-.+|-+||.
T Consensus 447 ~~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale~ 480 (501)
T PRK07737 447 GKDLNQIETQIDRFQD---RLKQIEDRYYKKFSAMEK 480 (501)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567788888877775 566666778888887763
No 61
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=59.87 E-value=1.1e+02 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=22.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 92 AYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 92 ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
.-..|++-+++|++++.++.+++.-|..+-.
T Consensus 272 L~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~ 302 (307)
T PF15112_consen 272 LRSNLQEELQKLDSLQTKHQKLESDVKELKS 302 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhHHHh
Confidence 3445777788888888888888776665543
No 62
>PRK10807 paraquat-inducible protein B; Provisional
Probab=58.02 E-value=1.3e+02 Score=27.74 Aligned_cols=99 Identities=13% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHH----HhhhhhcchhHH-HHHHHHHHHHHH-----HhhhHHHHHHHHHhhhhhh-hhhHhhHHHH
Q psy8908 32 RLNELATNMFKKTADY----LIGELSSTQADY-EVLEKMNNATIT-----KYSDMKQITVNISFSSARV-PAYKQLIPQL 100 (137)
Q Consensus 32 ~l~~la~~mf~kvs~Y----l~~El~~t~~dy-~LLE~mN~~~s~-----kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl 100 (137)
.|.+-+..+..++... +-++++++..+. +++++++..... -=..+.....++...+..+ ..-..++|-.
T Consensus 417 ~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~s 496 (547)
T PRK10807 417 QIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPGS 496 (547)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3444455555555544 223344444433 244444444311 1123334446666666666 5556655666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
....++.+.+.+|.+++..|..-+..|+.+
T Consensus 497 ~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~ 526 (547)
T PRK10807 497 PAYNKMVADMQRLDQVLRELQPVLKTLNEK 526 (547)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666677777788888888888888777754
No 63
>PRK04406 hypothetical protein; Provisional
Probab=57.82 E-value=36 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
+.|+++|.+++-.|.++..|+.-.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v 34 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDAL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 64
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.19 E-value=40 Score=23.80 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+.+..|+..|..|+.-...|..=.+.|+.+++++.
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555554
No 65
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=57.12 E-value=29 Score=22.65 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8908 107 YDSVLKLEQAAYKLD-HYAKRLEAKFK 132 (137)
Q Consensus 107 e~~V~~LE~~a~~LD-~Ysk~LE~K~k 132 (137)
=..+++||.++++|+ .|-.+||..-+
T Consensus 20 v~nL~ELE~is~rlg~~Y~~~LeeaK~ 46 (51)
T PF11433_consen 20 VRNLTELERISKRLGKSYQIRLEEAKE 46 (51)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 356788999999998 68999997644
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=56.93 E-value=84 Score=23.83 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=32.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 92 AYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 92 ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
-...|.+-..++.+++.....+|.-|..|+.=.-.+|.|+..|+.
T Consensus 92 ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 92 AEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334466677777777777777777777777777777777766654
No 67
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.91 E-value=34 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.-+..+++++..+|..+..|+.=-+.|+.+++++++
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555543
No 68
>PRK08724 fliD flagellar capping protein; Validated
Probab=56.52 E-value=93 Score=29.82 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
++|+.|++++..||. +++.+-.||..+|..|+
T Consensus 624 ~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD 655 (673)
T PRK08724 624 EQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQ 655 (673)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555555444443 55555566666666665
No 69
>PRK02119 hypothetical protein; Provisional
Probab=56.48 E-value=40 Score=22.98 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
+.|+++|.+|+-.|.++..|+.-.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665544
No 70
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=56.47 E-value=22 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
..+|+.|.+||+.|.-|+.|...|
T Consensus 101 EkLE~EvreLEQlV~DLE~WLDal 124 (135)
T PF15466_consen 101 EKLEKEVRELEQLVRDLEEWLDAL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999997654
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.00 E-value=1.6e+02 Score=29.66 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=26.7
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLE 114 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE 114 (137)
|++++......++-|.+=+......+..+.+-...|......+ ..-..+..-+++..+++.++.+|.
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~ 894 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333444444444444443333333 333333333333333333333333
No 72
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=55.82 E-value=70 Score=27.68 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 77 KQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 77 ~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
..++=.|-.=+..| ..-.....+.+.|..||.....|...+...+.=...+|.+|+
T Consensus 311 ~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 311 APSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555 556666667777777777777666655555554444444443
No 73
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.21 E-value=34 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+.=.-+..|++++..++..+..|+.=-+.|+.++++++.
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888888888887764
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=55.00 E-value=1.9e+02 Score=27.19 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
||.+++..++..+..+++-+..|....+.++.+++
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~ 338 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333
No 75
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=54.88 E-value=60 Score=21.54 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 73 YSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
+..+..........++.+ ..|..|-.--+.|..++..+..|...+..|-.-...|
T Consensus 28 ~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 28 ENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777 8888887777778778877777777777766655544
No 76
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=54.76 E-value=97 Score=29.36 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
++|+.|++++..+|. +|+.+-.+|-.+|-.||
T Consensus 607 ~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME 638 (661)
T PRK06664 607 ERIADNNKKIEEYEK---KLESKERKLKGKYLTMD 638 (661)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444444444444443 44555555666666665
No 77
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=54.75 E-value=92 Score=23.59 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8908 40 MFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 40 mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a 117 (137)
++.+..+++.---++-..|=+ ....+-+++......+...+.+= .++..+.+.+.+|+++...+.++-.+.
T Consensus 32 Lc~R~Q~HL~~cA~~Va~~Q~-------~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL 103 (131)
T PF10158_consen 32 LCSRYQEHLNQCAEAVAFDQN-------ALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLL 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555543333333322 23446677777777788888877 888888889999998888887754443
No 78
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=54.59 E-value=1.8e+02 Score=27.58 Aligned_cols=89 Identities=16% Similarity=0.064 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHH--
Q psy8908 35 ELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVL-- 111 (137)
Q Consensus 35 ~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~-- 111 (137)
+-+..+|..+++-++.-|.++.+.-+.|+..|+ ||..-.+.+.+..+.+..| .++...+|---+||+-+..|.
T Consensus 116 ~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~----~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~a 191 (593)
T PRK15374 116 ESQKEMGIQVSKEFQTALGEAQEATDLYEASIK----KTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQA 191 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Confidence 445677888888888888888888889988765 6788888889999999999 899988888777777666554
Q ss_pred --HHHHHHHHHHHHHHHH
Q psy8908 112 --KLEQAAYKLDHYAKRL 127 (137)
Q Consensus 112 --~LE~~a~~LD~Ysk~L 127 (137)
.+..+-...|+|+..-
T Consensus 192 ~~~a~~a~~~~~~~v~a~ 209 (593)
T PRK15374 192 GKEATEAKEALDKATDAT 209 (593)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3555666677776554
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.37 E-value=95 Score=23.65 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
++....+.+.+....+..+...+..+..-...|+.+..+.+
T Consensus 145 e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 145 EIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333367777778888888888888777777777766654
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=53.64 E-value=1.2e+02 Score=24.72 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHHhhhHH-------HHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 66 NNATITKYSDMK-------QITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 66 N~~~s~kY~~m~-------~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
|+.-...+.++. +..+-|...+.+| ..+..++..++.=+.+++.+..|=..++.|.+=.+.|=+.-+.+|+
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 4444555566666 6777777777777778888888877777777777777666666654
No 81
>PRK14011 prefoldin subunit alpha; Provisional
Probab=53.63 E-value=60 Score=24.94 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhC
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA----KRLEAKFKQLEKQ 137 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys----k~LE~K~k~le~~ 137 (137)
++..-|-.+|+.+++...+|..++.++.... ..|+.|++.++++
T Consensus 88 eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~ 135 (144)
T PRK14011 88 EVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQR 135 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566688888888777777766665555 4455888877653
No 82
>smart00721 BAR BAR domain.
Probab=53.10 E-value=1e+02 Score=23.68 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=60.7
Q ss_pred CcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhh------------HHHHHHHHHhhhh
Q psy8908 21 SSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSD------------MKQITVNISFSSA 88 (137)
Q Consensus 21 ~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~------------m~~~a~~l~~~~~ 88 (137)
.-|+-+.-.-..+...+.++...+..|+++ -.+.......-.++......-|.. +......+...+.
T Consensus 27 ~~f~~le~~~~~~~~~~~kl~k~~~~y~q~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (239)
T smart00721 27 EDFEELERRFDTTEAEIEKLQKDTKLYLQP-NPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALK 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHH
Confidence 345555556677888889999999999965 122223333333333333333322 2223333333333
Q ss_pred hh-hhh--------Hhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 89 RV-PAY--------KQL----IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 89 ~L-~ky--------~~l----~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.+ +.. .-+ .-+...|.+|.+.+.+++...-..|.+-.+|+
T Consensus 106 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~ 158 (239)
T smart00721 106 KLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLK 158 (239)
T ss_pred HHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33 211 112 23347788888999999999888888887765
No 83
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=53.06 E-value=45 Score=31.58 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
.++.--.++.++++.-+..+.+| |....|+..-.-|.+|-.++++||+-| ++|.
T Consensus 270 t~~~Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAda-QVDR 325 (610)
T PF01601_consen 270 TTASALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADA-QVDR 325 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcc-cccc
Confidence 34555678888889999999999 888999999999999999999999987 4555
No 84
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=52.46 E-value=26 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a 117 (137)
++|++||.++.+||+--
T Consensus 19 qkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKR 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 56677777777776543
No 85
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.45 E-value=2e+02 Score=27.50 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHHHHhhh-HHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 55 TQADYEVLEKMNNATITKYSD-MKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~kY~~-m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
+.+=++||-+-=+.-..+|.. .......|.+.+..| ... +..++.|+++.+....|.+.+.+|.+=-.++..+-+
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~---e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQK---EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667776666666667744 444455566666655 333 366777777777777776666666555455544544
Q ss_pred hhhh
Q psy8908 133 QLEK 136 (137)
Q Consensus 133 ~le~ 136 (137)
.|.+
T Consensus 611 ~L~~ 614 (717)
T PF10168_consen 611 KLMK 614 (717)
T ss_pred HHHH
Confidence 4444
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.27 E-value=1.5e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8908 47 YLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSA 88 (137)
Q Consensus 47 Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~ 88 (137)
-|+.+...-......+..+-.....+|..+...+..+.....
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555544433
No 87
>KOG2189|consensus
Probab=52.15 E-value=52 Score=32.15 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhh-hhh----Hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 64 KMNNATITKYSDMKQITVNISFSSARV-PAY----KQ-LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 64 ~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky----~~-l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+-=-+...++.+|.....=+...++.- -.- +. -.|--..|+++|.++++||.=+-++++....|.+++.+|.
T Consensus 49 R~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~ 126 (829)
T KOG2189|consen 49 RKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELL 126 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333455677788877776665555542 111 11 1456789999999999999999999999999999998775
No 88
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=51.97 E-value=52 Score=23.76 Aligned_cols=66 Identities=15% Similarity=0.276 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHH
Q psy8908 35 ELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLK 112 (137)
Q Consensus 35 ~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~ 112 (137)
++..+-|..++.|-+..+-....+- ..-..|.+..=+| .+|-+++|++.+|.+++.....
T Consensus 16 EsLr~Ff~RT~~~W~~~a~~~~~~~------------------~~~KeLrk~aF~lAe~Ry~E~k~~l~~le~~~ee~~~ 77 (96)
T PF13422_consen 16 ESLRDFFARTSEYWQEWAIESNRDA------------------HRGKELRKDAFDLAEERYWELKPELDELEDLEEEQAG 77 (96)
T ss_pred CcHHHHHHHhHHHHHHHHHHccccc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577788888888776655443332 2234666777777 9999999999999999998888
Q ss_pred HHHHHH
Q psy8908 113 LEQAAY 118 (137)
Q Consensus 113 LE~~a~ 118 (137)
.+.++.
T Consensus 78 ~ee~~~ 83 (96)
T PF13422_consen 78 IEEVVS 83 (96)
T ss_pred chHHhh
Confidence 887764
No 89
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.92 E-value=1e+02 Score=23.33 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy8908 65 MNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQ----IYDSV-------LKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 65 mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~----Ie~~V-------~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
|+++.+.==+.|.++-..|+..=.+| ++=..+...+++..+ |.++| +.+-.-+..+..-+.-||.|+.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555444444 444444433333222 22222 2233334444455566777777
Q ss_pred hhhh
Q psy8908 133 QLEK 136 (137)
Q Consensus 133 ~le~ 136 (137)
.||.
T Consensus 121 ~ie~ 124 (126)
T PF07889_consen 121 EIEE 124 (126)
T ss_pred HHhc
Confidence 6653
No 90
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=28 Score=26.32 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 114 EQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 114 E~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
+.++..|+.---.||.+++.|++
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLek 91 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEK 91 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666554
No 91
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=51.57 E-value=71 Score=22.07 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHH
Q psy8908 61 VLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 61 LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~ 115 (137)
=..++|-++..--.++.|.|.|+-++-.++ .-.+.--.-..++|..-..+.+||.
T Consensus 14 KvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELaklen 69 (71)
T COG5420 14 KVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKLEN 69 (71)
T ss_pred HHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777788888888877776666 4333322334567777777777764
No 92
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.96 E-value=48 Score=25.03 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
=.-++++++++..||-=+..|..--+.|+.+|++|+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888888888888888764
No 93
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=50.78 E-value=1.1e+02 Score=24.98 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.9
Q ss_pred HHHHHhhh
Q psy8908 128 EAKFKQLE 135 (137)
Q Consensus 128 E~K~k~le 135 (137)
|+|++.||
T Consensus 138 esRI~dLE 145 (196)
T PF15272_consen 138 ESRIADLE 145 (196)
T ss_pred HHHHHHHH
Confidence 34555554
No 94
>PRK07857 hypothetical protein; Provisional
Probab=50.73 E-value=18 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..+..+.++||+||.++-+|
T Consensus 28 ~~L~~lR~eID~ID~eIl~L 47 (106)
T PRK07857 28 AEIDELREEIDRLDAEILAL 47 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56888999999999998766
No 95
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=50.34 E-value=72 Score=21.10 Aligned_cols=90 Identities=8% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy8908 45 ADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYD---SVLKLEQAAYKL 120 (137)
Q Consensus 45 s~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~---~V~~LE~~a~~L 120 (137)
.+=++.++......++-|.++....-..-..=.+.-..|..-..++ .+...+...++.|...-. ....=...+...
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~ 88 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIR 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHH
Confidence 3445666777777777777776655444441122333333333444 444444444444333311 011112234445
Q ss_pred HHHHHHHHHHHHhh
Q psy8908 121 DHYAKRLEAKFKQL 134 (137)
Q Consensus 121 D~Ysk~LE~K~k~l 134 (137)
......|-.||+.+
T Consensus 89 ~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 89 KNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666553
No 96
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=50.30 E-value=17 Score=26.62 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~L 120 (137)
|-|.++|.+||++|+.|
T Consensus 34 ~pi~E~i~kLe~~addL 50 (96)
T PRK00965 34 DPIEEEINKLEALADDL 50 (96)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45556666666666544
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.99 E-value=1.3e+02 Score=27.53 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=24.4
Q ss_pred hhhcchhHHH-HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHH
Q psy8908 51 ELSSTQADYE-VLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQI 103 (137)
Q Consensus 51 El~~t~~dy~-LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qI 103 (137)
++..-..+++ +.+.+|..... |..+.+....+...++.+ ....++...++.+
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~-ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIA-YSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 34444444444 555555555555555555 4444444444433
No 98
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=49.94 E-value=1e+02 Score=22.73 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=45.7
Q ss_pred HHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 69 TITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+..|.+++.-+.-+.+.+-+= +++..|..-|.. =|..+.++|+=+.-|.=--.+|+.++..|+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~---ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKE---KEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888 899888766555 455566666655555555556666655543
No 99
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.70 E-value=98 Score=22.42 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
..+++..++.++..|......|+......+.+
T Consensus 85 l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 85 IEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444443
No 100
>PRK00846 hypothetical protein; Provisional
Probab=49.44 E-value=59 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
+.|+++|.+++-.|.++..|+.-.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v 36 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEAL 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444443
No 101
>PRK11637 AmiB activator; Provisional
Probab=49.25 E-value=1.8e+02 Score=25.34 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=10.7
Q ss_pred cCCccccccCCcccCC
Q psy8908 11 NKMTSLSTSTSSFEPM 26 (137)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (137)
+||...-|-|-.+.|-
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (428)
T PRK11637 1 MRGKAINTMTRAVKPR 16 (428)
T ss_pred CCCcccccccccccch
Confidence 4676777777777663
No 102
>KOG0933|consensus
Probab=48.59 E-value=2.6e+02 Score=28.55 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHH--HHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHh---hHHHHHHHHHHHHHHHH
Q psy8908 38 TNMFKKTAD--YLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQ---LIPQLEQIDQIYDSVLK 112 (137)
Q Consensus 38 ~~mf~kvs~--Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~---l~pyl~qID~Ie~~V~~ 112 (137)
+.|.+...+ -++.|++.....++.|++ ++.||.+|++-..-.-..+.-+.+..+ +...+.-++.|.+.|.+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~----~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e 752 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEA----QSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEE 752 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHH
Confidence 444444332 346777777777777765 456677766655544444443322222 33444445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 113 LEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 113 LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
+++-+...+.-.|.-+.+++.+|+
T Consensus 753 ~~~~Ike~~~~~k~~~~~i~~lE~ 776 (1174)
T KOG0933|consen 753 SEQQIKEKERALKKCEDKISTLEK 776 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555555543
No 103
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=48.44 E-value=36 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
-.-.++++|++++..|.++...|+.
T Consensus 40 ~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 40 LLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777788888888877777764
No 104
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.43 E-value=1.2e+02 Score=23.02 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 55 TQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+.+++.-|..=..........++.....+...+..|...........+|.++++++..|+.-...|-+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444443444555566666666666666666655555666667777777776666665555543
No 105
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=48.43 E-value=1.1e+02 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~L 120 (137)
.+|...+..+...+...
T Consensus 166 ~~i~~~i~~i~~~~~~~ 182 (213)
T PF00015_consen 166 EQINESIEEISEISEQI 182 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 106
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=48.05 E-value=49 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=9.2
Q ss_pred HHHHHHHH--HHHHHHHHHh
Q psy8908 116 AAYKLDHY--AKRLEAKFKQ 133 (137)
Q Consensus 116 ~a~~LD~Y--sk~LE~K~k~ 133 (137)
+..++|.. +|+|+.-+++
T Consensus 50 isdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT-
T ss_pred HHHHHHhchhhHHHHHHHhc
Confidence 33455555 6777666554
No 107
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.03 E-value=1.6e+02 Score=25.22 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHH
Q psy8908 61 VLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQ 102 (137)
Q Consensus 61 LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~q 102 (137)
++..++......+..+.+...++......| .+...+...+++
T Consensus 163 ~l~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~ 205 (359)
T COG1463 163 ILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIAN 205 (359)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 455556666666666666666666666666 655554444433
No 108
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=48.00 E-value=1.2e+02 Score=23.16 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=35.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+....+..|...|..++..+..+..-+.+|..--+.+|++.+.|.
T Consensus 37 ~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 37 EIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777888888888888888888888888888888887764
No 109
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=46.95 E-value=24 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
.+|..+..+||.||.++-+|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998776
No 110
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.90 E-value=1.2e+02 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.++++.+..++..||+-...|..+...|
T Consensus 80 ~~~~~~l~~~i~~Le~~l~~L~~~~~~l 107 (134)
T cd04779 80 AQEVQLVCDQIDGLEHRLKQLKPIASQT 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.69 E-value=2.8e+02 Score=26.90 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=38.5
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIP-QLEQIDQIYDSVLKLEQAAYKLDH-------YAKRLEAKFKQLE 135 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~p-yl~qID~Ie~~V~~LE~~a~~LD~-------Ysk~LE~K~k~le 135 (137)
-.||..-...+..+...++.| .+|..++. |-+..+.++..+..|..-+..+.. -...||+.++.+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~ 432 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALS 432 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 456666666677777777777 76666543 334445555555555544444444 5556666666543
No 112
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=46.60 E-value=23 Score=25.53 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
+.+..+..+||+||.++-+|
T Consensus 4 ~~L~~lR~~ID~ID~eIl~L 23 (102)
T TIGR01801 4 QSLEDLRAEVDQLNRQILAL 23 (102)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 35888999999999998776
No 113
>PRK06285 chorismate mutase; Provisional
Probab=46.45 E-value=26 Score=24.67 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..|.++..+||+||.++-+|
T Consensus 7 ~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 7 KRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998766
No 114
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.39 E-value=1.2e+02 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+....++..-.+|..|+.++..|......||.
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888888888888888876
No 115
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=46.23 E-value=1.1e+02 Score=24.50 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHhhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy8908 69 TITKYSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLE----QAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE----~~a~~LD~Ysk~LE~K~k~ 133 (137)
+...|.+-+..-++|++..+.| ++-+--..|+.=+++++.++-+|. .+...||.-.+..|.+-|.
T Consensus 37 Tee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 37 TEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777777 333335566666666666665554 4556677777777766554
No 116
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=46.04 E-value=1.1e+02 Score=22.58 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8908 119 KLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 119 ~LD~Ysk~LE~K~k~le 135 (137)
..+.--|-||+||+.+|
T Consensus 72 ~~E~~mk~l~~k~~~~e 88 (101)
T PF12308_consen 72 KMETQMKGLESKFRQVE 88 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344455666666554
No 117
>PRK07248 hypothetical protein; Provisional
Probab=45.97 E-value=24 Score=24.20 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+.++||+||.++-+|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVAL 20 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677889999999998776
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.93 E-value=1.3e+02 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8908 117 AYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 117 a~~LD~Ysk~LE~K~k~ 133 (137)
.++++.=-..++.+++.
T Consensus 89 l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 89 LKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 33333333333333333
No 119
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=45.78 E-value=24 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998766
No 120
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=45.48 E-value=1.8e+02 Score=24.40 Aligned_cols=64 Identities=11% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 71 TKYSDMKQITVNISFSSARV-PAYKQLIPQLEQID-QIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID-~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
-+...+.+.+..|...+..| .+...|..++..+- .|+.-+..+++++..++.-...+-.+++.+
T Consensus 226 w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l 291 (304)
T PF02646_consen 226 WRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKL 291 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35556666777777777766 66666665555442 344444455555555555555555554444
No 121
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=45.33 E-value=70 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHhhhhhh-hhhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV-PAYKQ----LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 81 ~~l~~~~~~L-~ky~~----l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+.++..+..+ .||++ |....++||.+|.++.+|-.++..|...-+.|-.
T Consensus 4 ~~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~ 57 (234)
T cd07665 4 NKATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELAL 57 (234)
T ss_pred hHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445 55555 6666788999999999999999999888777754
No 122
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.22 E-value=2.2e+02 Score=25.14 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
..++..+.+....+...++.+ .+..++++..++++++..++.+++.....
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~ 348 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888877 77777777777777777777776655444
No 123
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=45.00 E-value=25 Score=23.83 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (81)
T TIGR01805 1 LELIRKKIDEIDDKLVVL 18 (81)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456788999999998766
No 124
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=44.81 E-value=2.7e+02 Score=26.12 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=67.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhh-------hhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhH-hhHHH
Q psy8908 29 HDPRLNELATNMFKKTADYLIG-------ELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYK-QLIPQ 99 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~-------El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~-~l~py 99 (137)
|..-+..-+.++-+++..||.| -...+..+.++|+.|=++.......+..-..+|...+-.| .+.. .-+..
T Consensus 302 k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL 381 (531)
T PF15450_consen 302 KEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTL 381 (531)
T ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4445555566666666666654 2335677888998887777777777776667777766666 3332 23334
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 100 LEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 100 l~qID~Ie~~V-~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
-..|+++.... ...=.....||.|-+..++..+.+.
T Consensus 382 ~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~ 418 (531)
T PF15450_consen 382 NLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQ 418 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555433 3344566778888888888877765
No 125
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=44.80 E-value=25 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L 113 (137)
++..+.++||+||.++-+|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998776
No 126
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.77 E-value=1e+02 Score=28.58 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhh----hhhhhHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy8908 60 EVLEKMNNATITKYSDMKQITVNISFSSA----RVPAYKQLIPQLEQIDQIYDS----VLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 60 ~LLE~mN~~~s~kY~~m~~~a~~l~~~~~----~L~ky~~l~pyl~qID~Ie~~----V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
.+|.+.+-.+...+.+++..+.......+ +|..-..+.+|-++|.+|++. +..|-++..++|.-.++.++..
T Consensus 153 eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 153 ALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhh
Q psy8908 132 KQLEK 136 (137)
Q Consensus 132 k~le~ 136 (137)
..++.
T Consensus 233 ~~i~~ 237 (555)
T TIGR03545 233 QKIKS 237 (555)
T ss_pred HHHHH
No 127
>PRK10869 recombination and repair protein; Provisional
Probab=44.68 E-value=1.9e+02 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKR 126 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~ 126 (137)
++.-...||+++..|+.|...
T Consensus 270 l~~~~~~l~~~~~~l~~~~~~ 290 (553)
T PRK10869 270 LEEALIQIQEASDELRHYLDR 290 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444555556666555543
No 128
>PF08775 ParB: ParB family; InterPro: IPR014884 ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognises A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module []. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site []. ; PDB: 1ZX4_A 2NTZ_B.
Probab=44.63 E-value=75 Score=23.96 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-h
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-P 91 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ 91 (137)
.+..||++|-++-+....+=..+.+.+.++...++.+ .
T Consensus 7 Ls~~DY~~L~kv~~~~~~~~~~l~~~i~~v~~~~~~~~~ 45 (127)
T PF08775_consen 7 LSNSDYKLLLKVMKQLEKNKVSLDELIDNVRSEIENIDD 45 (127)
T ss_dssp --HHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4678999999998888888888888888888877777 5
No 129
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=44.58 E-value=22 Score=26.02 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~L 120 (137)
|-|.++|.+||++|..|
T Consensus 33 ~pi~eqi~kLe~~addl 49 (97)
T PF05440_consen 33 DPINEQIDKLEKAADDL 49 (97)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 130
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=44.38 E-value=1.2e+02 Score=21.72 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhh----Hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAY----KQ-LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky----~~-l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+..+.+++=....|...+... ... .. ..-.-+++..+++++.+|+.....|+.+...++.
T Consensus 49 I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 49 IKEARQLGFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHcCCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444544555555555444 211 11 2235567888888888888888888877776653
No 131
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.27 E-value=1.6e+02 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
-..|-.++..++.++..+...|.+|..-...|+.++..+.
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888887664
No 132
>KOG0804|consensus
Probab=44.18 E-value=1.5e+02 Score=27.52 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHhhhhhcchhHHH-HHHHHHH----HHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHH----HHHHHHHHHH--
Q psy8908 47 YLIGELSSTQADYE-VLEKMNN----ATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQID----QIYDSVLKLE-- 114 (137)
Q Consensus 47 Yl~~El~~t~~dy~-LLE~mN~----~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID----~Ie~~V~~LE-- 114 (137)
.+.++|+.-...|. -+.+|++ ++...|....+.+.++.....++ ..-..+..-++|.+ ...++...+.
T Consensus 325 ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 2333333 44556666666776666666666 44444444444433 2222222222
Q ss_pred --HHHHHHHHHHHHHHH
Q psy8908 115 --QAAYKLDHYAKRLEA 129 (137)
Q Consensus 115 --~~a~~LD~Ysk~LE~ 129 (137)
.++.-+|.|.+.|+.
T Consensus 405 n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 234445666655543
No 133
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.90 E-value=59 Score=27.08 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHHhhhHHHHHHHHHhhhhhh-h--------------hhHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8908 69 TITKYSDMKQITVNISFSSARV-P--------------AYKQLIPQLEQIDQIYDSVL-KLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~L-~--------------ky~~l~pyl~qID~Ie~~V~-~LE~~a~~LD~Ysk~LE~K~k 132 (137)
....|.+|++-+..+...+..+ . -+.+|.|-..-.-.+|..+. .|..++..+|.+++.+...++
T Consensus 52 ~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~ 131 (243)
T cd07666 52 RPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMK 131 (243)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667776666666555544 2 22333333333333454443 477778888888887777666
Q ss_pred hhh
Q psy8908 133 QLE 135 (137)
Q Consensus 133 ~le 135 (137)
.+.
T Consensus 132 ~l~ 134 (243)
T cd07666 132 GLS 134 (243)
T ss_pred HHH
Confidence 543
No 134
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=43.87 E-value=27 Score=23.34 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~ID~iD~~iv~L 18 (76)
T TIGR01807 1 LEELRNKIDAIDDRILDL 18 (76)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456788999999998766
No 135
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.47 E-value=87 Score=22.32 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
|.||++...|..-..+|-+-.++.-
T Consensus 43 D~LE~rnD~l~~~L~~LLesnrq~R 67 (83)
T PF03670_consen 43 DHLEQRNDHLHAQLQELLESNRQIR 67 (83)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 136
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=43.31 E-value=1.3e+02 Score=21.84 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..+..+++++..|++-...|...-..|+.+....+.
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777776666776666666666655543
No 137
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=42.92 E-value=26 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD 121 (137)
+|-|++||.+||+.|..|.
T Consensus 33 v~pi~Eqi~kLe~~vddl~ 51 (108)
T COG4062 33 VDPIEEQIKKLETLVDDLE 51 (108)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4667788888887776553
No 138
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=42.55 E-value=1.2e+02 Score=21.26 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQ 115 (137)
Q Consensus 103 ID~Ie~~V~~LE~ 115 (137)
||.+..+++.|+.
T Consensus 44 lDa~~~~l~~l~~ 56 (75)
T PF05531_consen 44 LDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 139
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=42.54 E-value=63 Score=18.21 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
...++.+...+..+..++..|-.|+
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~l~~~~ 64 (65)
T cd00082 40 REYLERIREEAERLLRLINDLLDLS 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888888888887775
No 140
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.46 E-value=2.1e+02 Score=24.23 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V-~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
-...+...|...|..-...-.++.+.+ ...+..| ++|.-|.. -||-|+-.= ..|+++-..|-+|-.+.|.++
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st---~~~Vr~lLqqy~~~~~---~i~~le~~~~~~l~~ak~eLqe~eek~e~~l 83 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDST---ALKVRKLLQQYDIYRT---AIDILEYSNHKQLQQAKAELQEWEEKEESKL 83 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhH---HHHHHHHHHHHHHHHH---HHHHHHccChHHHHHHHHHHHHHHHHHHhHH
Confidence 345677888888988887777776654 4566677 88876544 455555443 448888889999998888888
Q ss_pred Hhhhh
Q psy8908 132 KQLEK 136 (137)
Q Consensus 132 k~le~ 136 (137)
..|++
T Consensus 84 ~~Lq~ 88 (258)
T PF15397_consen 84 SKLQQ 88 (258)
T ss_pred HHHHH
Confidence 88875
No 141
>PF13166 AAA_13: AAA domain
Probab=42.30 E-value=2.7e+02 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy8908 105 QIYDSVLKLEQ 115 (137)
Q Consensus 105 ~Ie~~V~~LE~ 115 (137)
.++..+..++.
T Consensus 421 ~~~~~i~~~~~ 431 (712)
T PF13166_consen 421 ELEKEINSLEK 431 (712)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 142
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=42.30 E-value=1.6e+02 Score=24.32 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=34.9
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhh
Q psy8908 22 SFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSD 75 (137)
Q Consensus 22 ~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~ 75 (137)
-|+-+.--.+.....+.++..++..||++.-.. ..+.-++++|-.....+|--
T Consensus 18 df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~-r~~~~~~~k~~~~~~~~~~~ 70 (229)
T cd07594 18 HFENLLQRADKTKVWTEKILKQTEAVLQPNPNV-RVEDFIYEKLDRKKPDRLSN 70 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-hHHHHHHHHhhcccCCCCCc
Confidence 566666677778888999999999999975433 33344445554443444443
No 143
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.05 E-value=1.1e+02 Score=23.72 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=33.4
Q ss_pred hhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 88 ARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 88 ~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
.+| ++.+.++-|-.+|..+..++..|+.+...++.--.-|+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 677778888888888888999998888888877666653
No 144
>PRK01203 prefoldin subunit alpha; Provisional
Probab=41.97 E-value=86 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
-+.|+.|.+++.+||+++.+.-.-.++|+..+..|
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999887665
No 145
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=41.85 E-value=8.6 Score=36.08 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+++++.++.++|+.+.++++....|..++++++.
T Consensus 68 ~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E 102 (759)
T PF01496_consen 68 EIDELEEELEELEEELRELNENLEKLEEELNELEE 102 (759)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777776666543
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.85 E-value=1.5e+02 Score=25.33 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
++-.+|.++.....++...++.| .+- ..-..+||..+++++++.+-..+|..=-+.|+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi---~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQI---EEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666665555555555544 332 22334444444444444444433333333333
No 147
>KOG3366|consensus
Probab=41.84 E-value=93 Score=25.01 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhh-----cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHH
Q psy8908 40 MFKKTADYLIGELS-----STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSV 110 (137)
Q Consensus 40 mf~kvs~Yl~~El~-----~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V 110 (137)
+|.+..+=++..|. .+.+||.-+.+.- ....+++++.+..+.| ---.-...|+++||+-++..
T Consensus 31 ~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~v--------a~a~~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~ 99 (172)
T KOG3366|consen 31 SFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVV--------ANAGLVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAA 99 (172)
T ss_pred HHHHhhHHHHHHHHhcccCCCccCHHHHHHHh--------hhhHHHHHHHHHHHhccccCCCHHHHHHHhhHHHHHH
Confidence 45555444444443 4556665544422 2234444444444444 21112446788887766543
No 148
>KOG0250|consensus
Probab=41.81 E-value=1.7e+02 Score=29.62 Aligned_cols=29 Identities=0% Similarity=0.006 Sum_probs=13.5
Q ss_pred HHHHhhhHHHHHHHHHhhhhhh-hhhHhhH
Q psy8908 69 TITKYSDMKQITVNISFSSARV-PAYKQLI 97 (137)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~ 97 (137)
+..+..+++.-+.++...+.++ .+|..-+
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555544444 4444433
No 149
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.62 E-value=1.2e+02 Score=21.14 Aligned_cols=56 Identities=9% Similarity=0.157 Sum_probs=38.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 66 NNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 66 N~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
-+....+...+...-+.+++.+..+ ...+.......++..|-+++..+|..+..++
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777777 5446777888888888888888887655544
No 150
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.44 E-value=4.4e+02 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQID 104 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID 104 (137)
.+..+...+.++...|...++.| ...+....|+....
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888888 76666666666543
No 151
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=41.42 E-value=33 Score=24.57 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..|.++..+||+||.++-+|
T Consensus 8 ~~L~~lR~~ID~ID~~iv~L 27 (101)
T PRK07075 8 TGLDDIREAIDRLDRDIIAA 27 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998766
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.31 E-value=86 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
+.+++.++..|..-+..|....+.|++.++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 153
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=41.26 E-value=2.8e+02 Score=25.34 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHHHHHh-hhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHH-HHHHHHHHH
Q psy8908 30 DPRLNELATNMFKKTADYLI-GELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIP-QLEQIDQIY 107 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Yl~-~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~p-yl~qID~Ie 107 (137)
+++-.++.+.+-..++.++. .++.....+.+-++.+|+..+.--.++++....+...++...+...-.+ .-+.++.|+
T Consensus 439 ~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 518 (679)
T TIGR02916 439 NWEVRDLLKTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVE 518 (679)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 33444455555555666654 3444444444445555655444344555554444433333211111111 123356667
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8908 108 DSVLKLEQAAYKLDHY 123 (137)
Q Consensus 108 ~~V~~LE~~a~~LD~Y 123 (137)
..+..+.+++..|..+
T Consensus 519 ~~~~rl~~ll~~l~~~ 534 (679)
T TIGR02916 519 NAVNRMKKLLAQLRSK 534 (679)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777766544
No 154
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.16 E-value=1e+02 Score=20.32 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAY 118 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~ 118 (137)
.++.+|-++|.++++.|.
T Consensus 21 ~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 21 KENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555543
No 155
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.06 E-value=2e+02 Score=23.50 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy8908 34 NELATNMFKKTADYLIGELS 53 (137)
Q Consensus 34 ~~la~~mf~kvs~Yl~~El~ 53 (137)
...+++||.++..++.+=+.
T Consensus 10 ~qaWKdmy~aTE~~wak~~~ 29 (189)
T TIGR02132 10 FQAWKDAYDKTESFWGKAIG 29 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688888888877765443
No 156
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.87 E-value=1.3e+02 Score=21.22 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLE 114 (137)
Q Consensus 104 D~Ie~~V~~LE 114 (137)
++++..|..|.
T Consensus 35 ~~~e~ei~~l~ 45 (89)
T PF13747_consen 35 DELEEEIQRLD 45 (89)
T ss_pred hhHHHHHHHHH
Confidence 44444444333
No 157
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=40.87 E-value=1.6e+02 Score=23.34 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=29.4
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
+|+++......++..+.-+ .+|.+--.- .+++|+++|.+|+.++..
T Consensus 87 ~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~eqV~el~~i~em 133 (157)
T COG3352 87 NIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEEQVNELKMIVEM 133 (157)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655 555543333 678888888888877654
No 158
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=40.87 E-value=2e+02 Score=23.36 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy8908 63 EKMNNATITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 63 E~mN~~~s~kY~~m~~~a~~l~~~~~~L 90 (137)
..++.+....=.++.+...++...+..|
T Consensus 156 ~~l~~~l~~~~~~l~~~l~~l~~l~~~l 183 (291)
T TIGR00996 156 NALAEALAGQGPQLRNLLDGLAQLTAAL 183 (291)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 159
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=40.81 E-value=71 Score=18.29 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
...++.|+..+..+..++..+-.|++
T Consensus 37 ~~~~~~~~~~~~~~~~~v~~l~~~~~ 62 (66)
T smart00388 37 REYLETILRSAERLLRLINDLLDLSR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888899999988888875
No 160
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=40.30 E-value=1.5e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=17.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
..|..|-.....|...+.-+..+..-+..|..=.++|..
T Consensus 55 ~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~ 93 (132)
T PF10392_consen 55 SNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRS 93 (132)
T ss_pred hCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 161
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=40.29 E-value=32 Score=23.37 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|.++..+||+||.++-+|
T Consensus 1 L~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 1 LADIREAIDRIDLALVQA 18 (82)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998766
No 162
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.28 E-value=3.2e+02 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.++.|-.+..++..++.-+..-|+--++|+..++++.
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455555555566666666555666666666666554
No 163
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.22 E-value=1.4e+02 Score=21.34 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=33.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.+.....-+.|+.||..+..|+.-...|..=-+.++.+++.+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888889999999998888888888888888765
No 164
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=40.17 E-value=1.5e+02 Score=21.76 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~ 119 (137)
.|+.++..|..||+-+.+
T Consensus 97 ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 165
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.97 E-value=72 Score=22.39 Aligned_cols=44 Identities=7% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~ 111 (137)
.+=.+|..|.+....+...+.+| .....-...++++-+||.++.
T Consensus 7 ~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~g 51 (78)
T PF08656_consen 7 EVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIG 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 34467999999999999999999 777777788899989988875
No 166
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=39.48 E-value=34 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+.++||+||.++-+|
T Consensus 1 L~~lR~~ID~ID~~il~L 18 (83)
T TIGR01799 1 LEDLRGEIDGVDQELLHL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998665
No 167
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.43 E-value=1.4e+02 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
.-..+++.+|+.++..|+.+...||....
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888886553
No 168
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.38 E-value=2e+02 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=10.7
Q ss_pred cccCCCCCchHHHHH
Q psy8908 22 SFEPMISHDPRLNEL 36 (137)
Q Consensus 22 ~~~~~~~~~~~l~~l 36 (137)
-|.|+.-+.+++++-
T Consensus 29 HF~pL~~~~e~~REg 43 (190)
T PF05266_consen 29 HFSPLQEFKEELREG 43 (190)
T ss_pred CChhhhcCcHHhhhH
Confidence 577777777777764
No 169
>PLN02939 transferase, transferring glycosyl groups
Probab=39.09 E-value=1.9e+02 Score=29.03 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=37.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.--..|+.-+..+-++|+.|-.||.--.-||++.+.||+||-.-
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 240 DDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445677788888999999999999999999999999998543
No 170
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=37.95 E-value=67 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=18.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
+..+...-+.|+.|+..|..||.-.---+.-.+.|..++
T Consensus 7 ~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v 45 (116)
T PF10552_consen 7 MQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAV 45 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344445555566666666665544333333334444433
No 171
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.81 E-value=2.5e+02 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred HhhhHHHHHHHHHhhhhhh-hh---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 72 KYSDMKQITVNISFSSARV-PA---YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~k---y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.+.++......+...+..+ .. +........++..+......|.+...+|+.--+.|+..+...
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444 21 111233444455555555555555555555555555555443
No 172
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=37.29 E-value=11 Score=35.17 Aligned_cols=58 Identities=9% Similarity=0.269 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+...+......+......| ....+.+.|-+.+|.+-....+++.....++.|-++||.
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566667777777 777888999999999999999988888899999888873
No 173
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.25 E-value=1.3e+02 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 126 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~ 126 (137)
|+.|-+.-.++++.|.+|.++|..+|..-|.
T Consensus 64 L~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk~ 94 (313)
T PF05461_consen 64 LKEFPQLKEELEEHIRKLRALADEIDKVHKD 94 (313)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555667889999999999999987653
No 174
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.98 E-value=1.5e+02 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~L 120 (137)
+.+|+.+....+||.+..++
T Consensus 53 ~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 44455555555555554433
No 175
>PF15209 IL31: Interleukin 31
Probab=36.94 E-value=99 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=22.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
..+.+|++.|-.+.+.-. ...++.+||..
T Consensus 64 SaIl~ylk~Ik~l~~n~~-i~~Ii~~L~kl 92 (137)
T PF15209_consen 64 SAILPYLKAIKRLSNNTV-IDEIIEQLDKL 92 (137)
T ss_pred HHHHHHHHHHHHhcccch-HHHHHHHHHhc
Confidence 458999999999887744 78888888753
No 176
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=36.67 E-value=1.6e+02 Score=23.16 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=46.6
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
...|.++...|..|.+-+..+ .....=.-||+-|-+|-..|-+|=++|+.+=.
T Consensus 88 ~~~~~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdAvn~v~~ 141 (154)
T PF06840_consen 88 EPEFQELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDAVNEVFK 141 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999 88888889999999999999999999987643
No 177
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=36.65 E-value=40 Score=23.02 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~L 113 (137)
|..+..+||+||.++-+|
T Consensus 1 ~~~lR~~ID~ID~~lv~L 18 (83)
T TIGR01797 1 LLALREKISAIDEKLLKL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 346778999999998665
No 178
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=36.58 E-value=2.4e+02 Score=23.15 Aligned_cols=85 Identities=8% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHH
Q psy8908 38 TNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 38 ~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~ 115 (137)
-.|++..+.|++. ++++. +-|..||. +...=.+..+....+.+.++.| ..|+- ++.--+|+..+++-+..-++
T Consensus 102 ~~l~esl~~~i~~-~~~aa---~~i~~~~~-~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~ 176 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAA---KTLAPMTD-SYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSS 176 (202)
T ss_pred HHHHHHHHHHHHH-HHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 33332 23455554 2233335666677777777777 77665 44444444444433333333
Q ss_pred HHHHHHHHHHHH
Q psy8908 116 AAYKLDHYAKRL 127 (137)
Q Consensus 116 ~a~~LD~Ysk~L 127 (137)
.=.++..-++.|
T Consensus 177 fkeQ~~kLa~NL 188 (202)
T TIGR03513 177 LKEEMEKMAANL 188 (202)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 179
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.58 E-value=1.2e+02 Score=19.83 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=17.2
Q ss_pred HHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 80 TVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 80 a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
..+|...+..+ ... + ..--..|-.|+..+.+.++++.++|
T Consensus 5 ~~~i~~~l~~~~~~~-~-~~r~~~i~~~e~~l~ea~~~l~qMe 45 (79)
T PF05008_consen 5 TAEIKSKLERIKNLS-G-EQRKSLIREIERDLDEAEELLKQME 45 (79)
T ss_dssp HHHHHHHHHHGGGS--C-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccC-h-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444 222 1 3444444444444444444444443
No 180
>PHA02414 hypothetical protein
Probab=36.50 E-value=1.7e+02 Score=21.83 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHHHHHh-hhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHH
Q psy8908 30 DPRLNELATNMFKKTADYLI-GELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIY 107 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Yl~-~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie 107 (137)
|.+++.|..++ +.+-+=+| ||+..-. | |.--.....+++++..+|.+.+.-= +||..+ .=||..+|
T Consensus 3 D~~in~Lv~~v-~~ledKiQ~Gelt~kg-d-------n~eL~~av~ELRdivvslDKd~Av~sEKqshi---~yQi~~Le 70 (111)
T PHA02414 3 DKEINNLVSQV-ETLEDKIQEGELTDKG-D-------NKELEVAVAELRDIVVSLDKDVAVNSEKQSHI---YYQIERLE 70 (111)
T ss_pred chHHHHHHHHH-HHHHHHHhcCccccCC-c-------hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHH---HHHHHHHH
Confidence 34555554443 23333344 7776443 2 2222334578999999999988777 888775 34788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8908 108 DSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 108 ~~V~~LE~~a~~LD~Ysk 125 (137)
+.|+.|++.-.+=|.--|
T Consensus 71 e~i~aL~~~n~ked~~Kk 88 (111)
T PHA02414 71 EKISALAESNKKEDTEKK 88 (111)
T ss_pred HHHHHHHhccccccchhh
Confidence 889888887665554333
No 181
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.40 E-value=1.5e+02 Score=20.79 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
+....+-+.|+.|++++.+|+.....+-.....|+..+..+
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666788888888888888888888777777766654
No 182
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=36.16 E-value=40 Score=20.60 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy8908 115 QAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 115 ~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+|.+|=.-+.-||.|+..+|+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 3567777777788888877765
No 183
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=36.09 E-value=2.3e+02 Score=24.22 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy8908 37 ATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 37 a~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L 90 (137)
...+|.+|...+.++-... ...+.++.+.+..+......+
T Consensus 172 ~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~ave~ia~~~~~~ 211 (276)
T PF05929_consen 172 GKSLFSKVKALFKKKEASD--------------DEQFADLQQAVEAIAEQQQEL 211 (276)
T ss_pred hhhhhHHhhhhhcCCcCcc--------------hhhhhhHHHHHHHHHHHHHHH
Confidence 4567777777766554444 444455555555555555544
No 184
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.08 E-value=2.4e+02 Score=24.17 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhh----------hhhcchhHHHHHHHHHHHH-----------HHHhhhHHHHHHHHHhhhhhh-
Q psy8908 33 LNELATNMFKKTADYLIG----------ELSSTQADYEVLEKMNNAT-----------ITKYSDMKQITVNISFSSARV- 90 (137)
Q Consensus 33 l~~la~~mf~kvs~Yl~~----------El~~t~~dy~LLE~mN~~~-----------s~kY~~m~~~a~~l~~~~~~L- 90 (137)
=++||.+.|....-++.. +++ ..|..|.++==+++ .-.|.+|+.--..+..+++.+
T Consensus 71 GReLA~kf~eeLrg~VGhiERmK~PiGHDvE--hiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~ 148 (290)
T COG4026 71 GRELAEKFFEELRGMVGHIERMKIPIGHDVE--HIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148 (290)
T ss_pred hHHHHHHHHHHHHHhhhhhheeccCCCCCcc--ccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 477888888888776643 221 23555554422221 123666666665555544444
Q ss_pred hh-----------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 91 PA-----------YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 91 ~k-----------y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.- ..++..--..|..|+...+.||..-.+|-.-...|+.||..|+
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 22 2222222334445555556666665555544445556655554
No 185
>PHA02675 ORF104 fusion protein; Provisional
Probab=35.94 E-value=1e+02 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
|+..+..|++.-..+-..++.+...++.||
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE 64 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLE 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554455555555555444
No 186
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.40 E-value=2.3e+02 Score=22.64 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHH
Q psy8908 40 MFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 40 mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~L 113 (137)
.-.+.+..++-||..+..- +...+..-=.+|++..+.+.+.++.| ......+...++-..++.++..+
T Consensus 95 tsancs~QVqqeL~~tf~r------L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 95 TSANCSHQVQQELSSTFAR------LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ---------------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666676666432 33333333445555555555555555 44444444444444444444433
No 187
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.38 E-value=3.8e+02 Score=25.16 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=34.9
Q ss_pred HHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh
Q psy8908 45 ADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL 96 (137)
Q Consensus 45 s~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l 96 (137)
+..++++++-...+.+=|.+.|...-.....|+.-...+...+... +....|
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888777777777777777777777766666665555544 444333
No 188
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=35.35 E-value=73 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD 121 (137)
||.-|.-|.+||.-+..||
T Consensus 72 ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 72 LDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444
No 189
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.17 E-value=2.6e+02 Score=25.39 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHHh
Q psy8908 73 YSDMKQITVNISF 85 (137)
Q Consensus 73 Y~~m~~~a~~l~~ 85 (137)
|..+.+++..+..
T Consensus 279 ~~~l~d~~~~l~~ 291 (563)
T TIGR00634 279 LTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333333
No 190
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.15 E-value=33 Score=31.52 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
++||+++.++|.+|++-...|+.-..+.|
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 44777777777777777665555444444
No 191
>KOG0977|consensus
Probab=35.13 E-value=3.9e+02 Score=25.13 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=56.2
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
|+.-|....+-...||.=|.+-...+..+++... .....+ ..|+. +..-..-||++.....++|.-+.+|-.=.+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~ 123 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG---RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELK 123 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444555557888999999988888887776554 444555 55554 778888889998888888887766544444
Q ss_pred HHHHHHH
Q psy8908 126 RLEAKFK 132 (137)
Q Consensus 126 ~LE~K~k 132 (137)
.|..++.
T Consensus 124 elr~~~~ 130 (546)
T KOG0977|consen 124 ELRKKLE 130 (546)
T ss_pred HHHHHHH
Confidence 4444333
No 192
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.47 E-value=85 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
-..+++++|++++.+|++....|+.+.
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 101 (102)
T cd04789 75 LLLERLSSLAEQIARKQQARDLLAALL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355788899999999999998888764
No 193
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=34.41 E-value=1.4e+02 Score=20.95 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=13.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
++|.++.+.+.++.++=++..+.-....+|+.|
T Consensus 7 ~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~Y 39 (90)
T PF14131_consen 7 KIYNEWCELLEELEEALEKWQEAQPDYRKLRDY 39 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333333344444443
No 194
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.21 E-value=1.4e+02 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHhhhhhh-hhhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 83 ISFSSARV-PAYKQ----LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 83 l~~~~~~L-~ky~~----l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
++..+..+ .||.+ |..-.+.|+.+|.++.+|=..+..|...-+.|-.
T Consensus 6 ~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~ 57 (234)
T cd07664 6 AADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSA 57 (234)
T ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444 44444 5555677889999999999998888887777653
No 195
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=33.90 E-value=1.1e+02 Score=18.32 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=10.8
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..+...-..||.|+..|...
T Consensus 27 ~~v~~Q~~~ld~i~~~~~~~ 46 (60)
T cd00193 27 TEVEEQGELLDRIEDNVDNA 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445666666665443
No 196
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.73 E-value=2.5e+02 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=11.0
Q ss_pred HHHhhhHHHHHHHHHhhhhhh
Q psy8908 70 ITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L 90 (137)
+..|.+...-..++....+.|
T Consensus 131 T~~y~D~~arl~~l~~~~~rl 151 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERL 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 197
>PRK01203 prefoldin subunit alpha; Provisional
Probab=33.52 E-value=1.4e+02 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+++.-+-+||+.+..++..|..+..+++.-...|+.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677788999999999999999998886666654
No 198
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=33.49 E-value=1.1e+02 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
++...+.+-|.+|.+||.|.+.|-
T Consensus 67 qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 67 QLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788889999999999998886
No 199
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=32.87 E-value=95 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=25.2
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHhhhHHH
Q psy8908 49 IGELSSTQADYEVLEKMNNATITKYSDMKQ 78 (137)
Q Consensus 49 ~~El~~t~~dy~LLE~mN~~~s~kY~~m~~ 78 (137)
-+++++...+|++..|++-++..-|+|+.+
T Consensus 44 LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~ 73 (80)
T PRK15326 44 LAAYQSKLSEYNLYRNAQSNTVKVFKDIDA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999888777655
No 200
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=32.84 E-value=1.6e+02 Score=21.26 Aligned_cols=33 Identities=6% Similarity=0.157 Sum_probs=24.7
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQL-EQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 96 l~pyl-~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+...+ .++.+|++++..|+.+...|+......+
T Consensus 78 ~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~~~~ 111 (126)
T cd04783 78 ARELAEQKLAEVDEKIADLQRMRASLQELVSQCA 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444 5888999999999999888887765543
No 201
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.75 E-value=1.4e+02 Score=19.16 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.+|.+++..|..|+.-...|-.=...|...+..|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444444444333
No 202
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.53 E-value=2.2e+02 Score=21.53 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
-.-|.+|...|..+-.+|.-||.=-.+||.
T Consensus 95 ~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 95 REDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666666665555554
No 203
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.39 E-value=3.4e+02 Score=24.85 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHH---hhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHH
Q psy8908 30 DPRLNELATNMFKKTADYL---IGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQ 105 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Yl---~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~ 105 (137)
-|.+.+..-.+|..+..-+ ..+++....++.-++.--..+...|..+.+.+.+|......+ +.=..=..|...-+.
T Consensus 439 lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~ 518 (569)
T PRK04778 439 LPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEE 518 (569)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 3444455555555554433 255555555555555444555555555555555555555544 222223344445555
Q ss_pred HHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQA 116 (137)
Q Consensus 106 Ie~~V~~LE~~ 116 (137)
|.+...+=|..
T Consensus 519 V~~~f~~Ae~l 529 (569)
T PRK04778 519 VAEALNEAERL 529 (569)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 204
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=32.34 E-value=2e+02 Score=21.05 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=56.4
Q ss_pred hhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 52 LSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 52 l~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
++.+.....++-.||.....+|..... .|...++.+ ..-+.++..|..--.+-.+..+.+.+|..+-++-
T Consensus 58 ~e~~~~k~q~~~~~n~~e~e~Y~~~~~---~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 58 FEFSILKSQLILEMNKRERENYEQLNE---EIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556778899999999999987764 556667777 7778888888888888888889999988887766
No 205
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.32 E-value=4e+02 Score=25.85 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=12.6
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhh
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAY 93 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky 93 (137)
.+...+.+++.....+......+ .+|
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~ 389 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERY 389 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444444 444
No 206
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=32.05 E-value=1.4e+02 Score=22.47 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
+.-.+|-.+|.+...+|.+-..|=.+.|.||-.+|.-
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999887753
No 207
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.02 E-value=2.5e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy8908 61 VLEKMNNATITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 61 LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L 90 (137)
=|+++|++...++.++.....+++...+.+
T Consensus 23 ~l~kv~~Ri~k~~~~l~~dl~elG~~fn~l 52 (187)
T cd07629 23 GMEKVNRRITKRLGDLAEDMADLGGRFNAF 52 (187)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778887777777777777766666666
No 208
>KOG0995|consensus
Probab=31.72 E-value=4.6e+02 Score=24.93 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhhcchhHHHHHHHH---HHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy8908 41 FKKTADYLIGELSSTQADYEVLEKM---NNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 41 f~kvs~Yl~~El~~t~~dy~LLE~m---N~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~ 116 (137)
|..-..|+.|+=+.+.-+=+|..++ ++..+....+|+.....|...++.. .--...+..-..+-.+...|.++.+.
T Consensus 202 ~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y 281 (581)
T KOG0995|consen 202 IRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY 281 (581)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 3445556666555443333443333 3333444444444444444444433 22222333333444445555555555
Q ss_pred HHHHHHH
Q psy8908 117 AYKLDHY 123 (137)
Q Consensus 117 a~~LD~Y 123 (137)
+..+-.-
T Consensus 282 ~~~~~~k 288 (581)
T KOG0995|consen 282 VSQMKSK 288 (581)
T ss_pred HHHHHhh
Confidence 4444433
No 209
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.54 E-value=3.1e+02 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=13.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSA 88 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~ 88 (137)
.+..|+.=+++-=+.+..+-.++....+++...+.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333333344444444444433333
No 210
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=31.40 E-value=2.7e+02 Score=22.19 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 41 FKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 41 f~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
|..+.+|+.- | ..++.-+++.|.+...++.++.....+++.-...+ ..-..|.+ .||.+...
T Consensus 16 F~~ikey~~~-L---~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~-------------~le~~g~~ 78 (201)
T cd07622 16 FEDLKNYSDE-L---QTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGD-------------GLQKAGHY 78 (201)
T ss_pred HHHHHHHHHH-H---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-------------HHHHHHHH
Confidence 4556777642 2 23444577888888887776666555555555544 33333322 34555555
Q ss_pred HHHHHHHHHH
Q psy8908 120 LDHYAKRLEA 129 (137)
Q Consensus 120 LD~Ysk~LE~ 129 (137)
+|.|+..++.
T Consensus 79 ~d~~~~~~~~ 88 (201)
T cd07622 79 MDSYAASIDN 88 (201)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 211
>KOG4117|consensus
Probab=31.33 E-value=1.8e+02 Score=20.16 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy8908 43 KTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 43 kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L 90 (137)
.++.|++|=|+-+..-| ..|-.-.+.+-.+|..-..++++++.+|
T Consensus 16 ~LTs~vQ~lLQq~QDkF---QtMSDQII~RiDDM~~riDDLEKnIaDL 60 (73)
T KOG4117|consen 16 DLTSVVQGLLQQTQDKF---QTMSDQIIGRIDDMSSRIDDLEKNIADL 60 (73)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34556666665555443 3455555666666666666666666655
No 212
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.27 E-value=82 Score=20.09 Aligned_cols=18 Identities=50% Similarity=0.597 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8908 112 KLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 112 ~LE~~a~~LD~Ysk~LE~ 129 (137)
.|+....+||.-|++||.
T Consensus 24 ~lq~Lt~kL~~vs~RLe~ 41 (47)
T PF10393_consen 24 ALQSLTQKLDAVSKRLEA 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455567777777664
No 213
>PRK09239 chorismate mutase; Provisional
Probab=31.13 E-value=68 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=18.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~L 113 (137)
..-..|..+..+||.||.++-+|
T Consensus 7 ~~~~~L~~lR~~ID~ID~eIv~L 29 (104)
T PRK09239 7 RAPAELAALRQSIDNIDAALIHM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466888999999999998766
No 214
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=30.97 E-value=16 Score=27.26 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~ 119 (137)
+-++|++.+..|..|+..+..
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~ 70 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPD 70 (138)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 215
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.91 E-value=1.5e+02 Score=19.52 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKL 113 (137)
Q Consensus 98 pyl~qID~Ie~~V~~L 113 (137)
..-+.|+.|++.|.+|
T Consensus 25 ~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 25 EISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555555444
No 216
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.80 E-value=2.6e+02 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
|-.+...|+++=+++.+||+.+.++.
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666554
No 217
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.77 E-value=2e+02 Score=21.03 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=23.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.-|..+.|-|=.- +.++-+..|+.-...++.-.+.||.+-..++
T Consensus 55 ~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 55 PIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred hhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554333 3444555555555555555555555555444
No 218
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=30.72 E-value=2.5e+02 Score=21.58 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8908 35 ELATNMFKKTADYLIGE 51 (137)
Q Consensus 35 ~la~~mf~kvs~Yl~~E 51 (137)
+|...|.+-+..|+.+|
T Consensus 48 dli~~Lv~~v~~y~~~E 64 (186)
T PF04011_consen 48 DLIPNLVEIVKSYAKHE 64 (186)
T ss_dssp HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666655
No 219
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=30.71 E-value=3e+02 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHH
Q psy8908 55 TQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~L 113 (137)
-.+|..||.+| ..+...|.+|.+.=.+|-..-..- .-+.+|...|+.|++|=++-+.|
T Consensus 343 rAEDaRl~~d~-~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~vn~~iq~a~~L 401 (431)
T PF14782_consen 343 RAEDARLMGDM-KNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKEVNQIIQKASRL 401 (431)
T ss_pred HhhhHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34788888887 567788999998888887777777 88899999999999998887766
No 220
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.60 E-value=1.3e+02 Score=20.74 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
|...+++=-+||+++..||+-+|.++
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~E 29 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKE 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666665544
No 221
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=30.28 E-value=2.7e+02 Score=21.83 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhhhh-hhhH--hhHHHHHHHHHHHHHHHHHHHH
Q psy8908 43 KTADYLIGELSSTQADYEVLEKMNNATITKYSDM---KQITVNISFSSARV-PAYK--QLIPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 43 kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m---~~~a~~l~~~~~~L-~ky~--~l~pyl~qID~Ie~~V~~LE~~ 116 (137)
...+||.|=...|.+=..+ -+|..+.+.|..- -+.+.+|...+..| --.. .-.+..+++|.+...|.++|.+
T Consensus 114 ~~~dYL~Gl~DltGEL~R~--ai~~v~~gd~~~~~~i~~f~~~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~ 191 (200)
T PF01997_consen 114 TPEDYLLGLADLTGELMRY--AINSVTKGDYERPEKILEFMRELYSGFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEV 191 (200)
T ss_dssp -HHHHHHHHHHHHHHHHHH--HHHHHHTT-SSHHHHHHHHHHHHHHHHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHhhccchhhHHHHHHHHHHHHHHHHhCcchhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3466777665555444433 2455666655442 23333333444444 2000 2256678999999999999999
Q ss_pred HHHH
Q psy8908 117 AYKL 120 (137)
Q Consensus 117 a~~L 120 (137)
+|.+
T Consensus 192 ~y~l 195 (200)
T PF01997_consen 192 VYDL 195 (200)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 9875
No 222
>KOG4674|consensus
Probab=30.15 E-value=7.4e+02 Score=26.87 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhh
Q psy8908 42 KKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAY 93 (137)
Q Consensus 42 ~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky 93 (137)
.+|-.||..|.+.....|.++..=|..-..+|.-+...+.++...+... ..+
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~ 1204 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS 1204 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999988888888887776 555
No 223
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.10 E-value=2.5e+02 Score=21.43 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8908 113 LEQAAYKLDHYAKRLE 128 (137)
Q Consensus 113 LE~~a~~LD~Ysk~LE 128 (137)
+++.+..++.+..+|+
T Consensus 175 ~~~~~~~l~~~l~~l~ 190 (204)
T PF04740_consen 175 IEELLQALQSGLSQLQ 190 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 224
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.87 E-value=1e+02 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.7
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 92 AYKQLIPQLEQIDQIYDSVLKLEQAAY 118 (137)
Q Consensus 92 ky~~l~pyl~qID~Ie~~V~~LE~~a~ 118 (137)
-...++....+.+..++.|..||.++.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334567777888888999999998864
No 225
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=29.82 E-value=1.1e+02 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 107 YDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 107 e~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+.+..|...|++|+.|..++=..+..+++
T Consensus 64 ~~ll~eL~~~asqL~~~~~~~~e~l~~le~ 93 (127)
T PF14591_consen 64 LQLLDELKSYASQLQEHYFRVRELLEDLER 93 (127)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777666555555544
No 226
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.73 E-value=3.5e+02 Score=23.17 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=36.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 51 ELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 51 El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
-++-+..+-.=|-.=|..--.+|.+..+-...|.+....| .+..-+ ...+-.+.+..++||.-+.-+|
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l---~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL---PGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHhcccccchH
Confidence 3444444444444446666677777777777777666666 443332 3344444555555554443333
No 227
>KOG4025|consensus
Probab=29.66 E-value=2.3e+02 Score=23.18 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 69 TITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
....|+++...|..|.+-+..+ .--+-=..+|+-|.+|-..|-+|=++|+.+=
T Consensus 91 ~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v~ 144 (207)
T KOG4025|consen 91 YEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAVY 144 (207)
T ss_pred CCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888888888777 6555566788888888888888888877653
No 228
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=29.61 E-value=94 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
.-.-+++.+|++++.+|...-..|+.+...++.
T Consensus 81 ~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 81 AALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567888888888888888888887776654
No 229
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.61 E-value=4.1e+02 Score=24.99 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
|+.+.. +...+..++..-+..+.++ +....++.-+++|+..+.++..||+-+..+
T Consensus 299 L~~ve~----Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l 354 (557)
T COG0497 299 LEEVEE----RLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKL 354 (557)
T ss_pred HHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 555444 3344556666666667777 777777777777777777777777665554
No 230
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=77 Score=25.89 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhh----cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHH
Q psy8908 29 HDPRLNELATNMFKKTADYLIGELS----STQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQID 104 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~El~----~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID 104 (137)
...-+.-+|.+.|.-.--|+.|=.= ....-+.+++.|=+.. .+ +-.+||
T Consensus 87 ~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~---------------------~~------~~~k~D 139 (192)
T COG5374 87 AVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEEN---------------------AK------KGGKID 139 (192)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hh------cccchh
Confidence 3455778888888888888888110 0111222233322211 11 115566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..+...+.||+.+..=+.+-+.|+.+++.++
T Consensus 140 ~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~ 170 (192)
T COG5374 140 KMEADSTDLKARLRKAQILLEGLQKNQEELF 170 (192)
T ss_pred hhhcchHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655554
No 231
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=29.44 E-value=3.6e+02 Score=23.03 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHhhhhhh
Q psy8908 74 SDMKQITVNISFSSARV 90 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L 90 (137)
.++.|+..-++.-+.++
T Consensus 96 ddl~DIsDklgvLl~e~ 112 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEI 112 (271)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 35555555555554444
No 232
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.21 E-value=1.6e+02 Score=19.42 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
-||+++..||+-.....+-.+.-|.+.+..+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4888888888888888877777777777644
No 233
>PHA01750 hypothetical protein
Probab=29.09 E-value=2e+02 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8908 33 LNELATNMFKKTADYLI 49 (137)
Q Consensus 33 l~~la~~mf~kvs~Yl~ 49 (137)
++..|+.+|.=++-|+.
T Consensus 11 mSTtaTtlFaIiqlYlK 27 (75)
T PHA01750 11 MSTTATTLFAIIQLYLK 27 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666666654
No 234
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=28.94 E-value=1e+02 Score=23.45 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 108 DSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 108 ~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
+++..+|.-..+||.=..-||+|+.+
T Consensus 21 ~kL~~~e~~Lq~~E~~l~iLEaKL~S 46 (148)
T PF10152_consen 21 EKLSDMEQRLQRLEATLNILEAKLSS 46 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333343444444444445555544
No 235
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.72 E-value=4.9e+02 Score=24.31 Aligned_cols=40 Identities=3% Similarity=0.151 Sum_probs=20.4
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hhh----HhhHHHHHHHHHHHHHH
Q psy8908 71 TKYSDMKQITVNISFSSARV-PAY----KQLIPQLEQIDQIYDSV 110 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~ky----~~l~pyl~qID~Ie~~V 110 (137)
..+.+++.....+...+.++ .+| +.+...-.||++++.++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555 444 33444445566555554
No 236
>KOG0996|consensus
Probab=28.68 E-value=3e+02 Score=28.51 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 137 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~~ 137 (137)
..+...........+.+ +..+.+..+...|.+++.++++++.-+..+..-.-.||..++++|++
T Consensus 785 ~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 785 RALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>smart00338 BRLZ basic region leucin zipper.
Probab=28.60 E-value=1.6e+02 Score=18.78 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
|++++.+|..|+.-...|=.=...|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333
No 238
>KOG4191|consensus
Probab=28.53 E-value=4.9e+02 Score=24.28 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhH---hhHHHHHHH
Q psy8908 28 SHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYK---QLIPQLEQI 103 (137)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~---~l~pyl~qI 103 (137)
||.-.+.+=..+=...++-|..++.-+.-.|=++|-.+=+.++ .++.+...-++...+| +.-. .++.|-+.+
T Consensus 373 ph~~s~E~RLK~eL~~~Gll~ded~pasdddDEvlaeLR~lqa----eLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~l 448 (516)
T KOG4191|consen 373 PHTKSLESRLKEELIAQGLLEDEDRPASDDDDEVLAELRKLQA----ELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVL 448 (516)
T ss_pred ccccCHHHHHHHHHHHhccccccCCCcccchHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4554444444444455666777777777766666665555443 4666666666666676 4443 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
|++|++|. +.|.|++-++-|
T Consensus 449 ddlDkqI~---------qaYvKr~r~~kk 468 (516)
T KOG4191|consen 449 DDLDKQIE---------QAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHH---------HHHHHHHHHHHh
Confidence 99999874 678888766544
No 239
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=28.30 E-value=66 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCccccccCCcccCCCCCc---hHHHHHHHHHHHHHHHHHhh
Q psy8908 12 KMTSLSTSTSSFEPMISHD---PRLNELATNMFKKTADYLIG 50 (137)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~l~~la~~mf~kvs~Yl~~ 50 (137)
.|.+.-.+|.-||+..... ....+++..||..|-.||-+
T Consensus 109 ~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLla 150 (151)
T PF00407_consen 109 DGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLA 150 (151)
T ss_dssp TSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3457888999999988776 44667799999999999864
No 240
>KOG4117|consensus
Probab=28.22 E-value=2.1e+02 Score=19.86 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhh-hhhHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 76 MKQITVNISFSSARV-PAYKQL-IPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 76 m~~~a~~l~~~~~~L-~ky~~l-~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
|.+.+.-+-.-+.+. .|+..+ ......||+.-..+..||+.+.-|
T Consensus 14 mq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDL 60 (73)
T KOG4117|consen 14 MQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADL 60 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 333444444444455 455443 234455666666666666655444
No 241
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.21 E-value=50 Score=23.06 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+|+.+...+..+.-+-..-+.|+
T Consensus 30 Lees~~lyeeG~~L~k~C~~~L~ 52 (80)
T PRK14067 30 LEESVALYKEGLGLARACREQLA 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444444
No 242
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.13 E-value=49 Score=22.75 Aligned_cols=14 Identities=14% Similarity=-0.059 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy8908 107 YDSVLKLEQAAYKL 120 (137)
Q Consensus 107 e~~V~~LE~~a~~L 120 (137)
|+.+..+|..+.-+
T Consensus 30 eesl~~ye~G~~L~ 43 (75)
T PRK14064 30 EDSLDMYQKGIELT 43 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 243
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=28.06 E-value=1.8e+02 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQ-AAYKLDHYAKR 126 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~-~a~~LD~Ysk~ 126 (137)
+.-++++++||++|..|=+ +...+..+++.
T Consensus 2 ~eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~ 32 (117)
T PF10280_consen 2 AERLQQLNEIDKKIVSLLQHAGQAIQELSNP 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567888999998877644 44557777764
No 244
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=27.95 E-value=1.6e+02 Score=19.83 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy8908 73 YSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSV--LKLEQAAYKLDHYAKR 126 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V--~~LE~~a~~LD~Ysk~ 126 (137)
|..+..+++.|+..-..|.+.=.| .-..|+.|+..- ...|++...|..|..+
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~Lg~--~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r 57 (84)
T cd08317 4 DIRLADISNLLGSDWPQLARELGV--SETDIDLIKAENPNSLAQQAQAMLKLWLER 57 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHcCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 456778888888777777332222 236788888764 3469999999999865
No 245
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.71 E-value=2.6e+02 Score=20.92 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHh--hhhhcchhHHHH----------------------HHHHHHHHHHHhhhHHHHHHHHHhh
Q psy8908 31 PRLNELATNMFKKTADYLI--GELSSTQADYEV----------------------LEKMNNATITKYSDMKQITVNISFS 86 (137)
Q Consensus 31 ~~l~~la~~mf~kvs~Yl~--~El~~t~~dy~L----------------------LE~mN~~~s~kY~~m~~~a~~l~~~ 86 (137)
+-|..|+..||..|+ ||+ +.......+.-- -+..+.....==.++-..+..|..-
T Consensus 10 d~ldqL~~~f~~si~-~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~kakqIe~L 88 (144)
T PF11221_consen 10 DCLDQLAEQFCNSIG-YLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIRKAKQIEYL 88 (144)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776655 554 344333333311 1223333333334556666677777
Q ss_pred hhhh-hhhHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 87 SARV-PAYKQLIPQLEQIDQIYDSVL----KLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 87 ~~~L-~ky~~l~pyl~qID~Ie~~V~----~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+..| ....+=+.-++.|..++++.. +|++++.+-|.+.++++..|+.+.
T Consensus 89 IdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 89 IDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777 655555666777777776654 567788888999999998888764
No 246
>KOG0810|consensus
Probab=27.53 E-value=1e+02 Score=26.39 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.-|+.++.+|..|...+.+|+..+.+|+.+-+.+
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~ 66 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS 66 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3377777888888888888887777777775443
No 247
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.44 E-value=2.8e+02 Score=24.55 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=27.9
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
..+...++..-+.+++.+..+ ..-+..+....++.+|.+++..||+....++
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554 3333445566666666666666666554443
No 248
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.38 E-value=2e+02 Score=19.45 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+...|..+-.++..+|..+..|..-...++.++..++
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444444444444443
No 249
>KOG2909|consensus
Probab=27.30 E-value=3e+02 Score=24.73 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh----hhhHhhHHHHHHHHHHHHHH
Q psy8908 35 ELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV----PAYKQLIPQLEQIDQIYDSV 110 (137)
Q Consensus 35 ~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L----~ky~~l~pyl~qID~Ie~~V 110 (137)
..|..+-.||+.|+...++.+.....==--.|. ..+...+..+ +||.--++.-+.||-|..++
T Consensus 64 ~~~e~~i~ki~~~~~~~le~~s~~~~~~l~~n~-------------~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~ 130 (381)
T KOG2909|consen 64 TFVEGLIKKIAGYLKEVLEDSSGKVGENLMANG-------------VPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEI 130 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhceeeCC-------------cCHHHHHhHheehhhhccccccHHHHHHHHHHHH
Confidence 346677788888887777665443220000111 1122333333 88999999999999999999
Q ss_pred HHHHHHHH
Q psy8908 111 LKLEQAAY 118 (137)
Q Consensus 111 ~~LE~~a~ 118 (137)
+++|....
T Consensus 131 ~qie~Dlk 138 (381)
T KOG2909|consen 131 AQIENDLK 138 (381)
T ss_pred HHHHHHHH
Confidence 99987543
No 250
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.11 E-value=2.9e+02 Score=21.26 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+..+.++|+++.+.+..++.-+..|+.
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEELEE 74 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555544
No 251
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=27.04 E-value=1.5e+02 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKR 126 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~ 126 (137)
-+.+++.+|+.++.+|......|+.+...
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02044 83 RTLEKVAEIERKISELQSMRDQLEALAQA 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999888887653
No 252
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.97 E-value=2e+02 Score=27.61 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred CcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-h--hhHhhH
Q psy8908 21 SSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-P--AYKQLI 97 (137)
Q Consensus 21 ~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~--ky~~l~ 97 (137)
+.|+.+.-+-+++.-|..+.-....++.++.++.- .--..++++++.... .++...|..++....++ . ...+|+
T Consensus 572 ~~~~~~~v~l~~i~lL~~~~~~~L~~~~~s~l~~~-~~~~~~~~l~~~~t~--~dL~~~a~~L~~la~~~~~~~~~~~L~ 648 (806)
T PF05478_consen 572 SEFESLNVDLSNITLLTPEEKRNLEDLRNSGLSDI-DFSLYLEQLCKPLTP--VDLPSLANQLEALANSLPNGWLRNALK 648 (806)
T ss_pred HHHHHhccCcccccccCHHHHHHHHHHHhCCCccC-CHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHhcCCCchhHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 98 PQLEQIDQIYD-SVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 98 pyl~qID~Ie~-~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..-..+..|.. .|..|+..+.+|-+-.+.|+.....+..
T Consensus 649 ~~a~~l~~~~~~~v~pl~~~~~~L~~~l~~L~~~~~~l~~ 688 (806)
T PF05478_consen 649 NEAQNLRAIQKELVSPLEQLVSKLNQSLKKLDSLSSNLQN 688 (806)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchHHH
No 253
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.91 E-value=3.7e+02 Score=22.35 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=14.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
....+|..--..||.++..|..++.++.+|
T Consensus 51 ~~~~eF~Emkey~d~L~~~L~~ieki~~Rl 80 (243)
T cd07666 51 NRPEEFTEMNEYVEAFSQKINVLDKISQRI 80 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444444455555555444433
No 254
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=26.42 E-value=2.1e+02 Score=19.37 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=21.6
Q ss_pred HHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHH
Q psy8908 83 ISFSSARV-PAYKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 83 l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~L 113 (137)
|..+++.+ ..=.+++..+..|-++|.++..+
T Consensus 3 le~f~d~~~~LP~el~r~l~~irelD~~~~~~ 34 (105)
T PF12998_consen 3 LEDFLDSLENLPAELQRNLTLIRELDAKSQDL 34 (105)
T ss_dssp HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHhhhhHHHH
Confidence 45666677 77777777777777777776443
No 255
>PRK06034 hypothetical protein; Provisional
Probab=26.17 E-value=64 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHH
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~L 113 (137)
-..|....++||+||.++-+|
T Consensus 8 ~~~L~eLR~eID~ID~eLl~L 28 (279)
T PRK06034 8 PPSLAELRWEIDAIDEELHQL 28 (279)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 356888999999999998776
No 256
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.11 E-value=3.2e+02 Score=21.37 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 75 DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDS---VLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~---V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.|..+...+.+...+| .-|.+|.+.++....+|.. -..||.+....|..+..++.-...+
T Consensus 23 ~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~l~~~l 86 (187)
T cd07629 23 GMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEALVGSL 86 (187)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777 7788888888888888743 4678888888888888777655544
No 257
>KOG4552|consensus
Probab=26.07 E-value=4.1e+02 Score=22.53 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=26.0
Q ss_pred hhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 91 PAYKQLIPQLEQI---DQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 91 ~ky~~l~pyl~qI---D~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|..+|+..|+.. -.++.-+..||+-|.+=|+-..+|+..+|..|
T Consensus 54 ~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 54 SKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred hccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6666666655433 23555566666666666666666666655543
No 258
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=26.03 E-value=2.8e+02 Score=20.56 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhcchhHH-------HHHHHHHHH------------HHHHhhhHHHHHHHHH-hhhhh
Q psy8908 30 DPRLNELATNMFKKTADYLIGELSSTQADY-------EVLEKMNNA------------TITKYSDMKQITVNIS-FSSAR 89 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Yl~~El~~t~~dy-------~LLE~mN~~------------~s~kY~~m~~~a~~l~-~~~~~ 89 (137)
-..+...+..+-..+..|+++--......- .|=..|... ...+|...-+....+. .....
T Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 114 (229)
T PF03114_consen 35 FKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQ 114 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666664444333333 333333332 2223433333322222 22233
Q ss_pred h-h-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 90 V-P-AYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 90 L-~-ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+ . -..-+..++..+..|.+.+.+++...-..|.|..+++.
T Consensus 115 ~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 115 IESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2 23558889999999999999999999999999988875
No 259
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.01 E-value=1.3e+02 Score=25.24 Aligned_cols=74 Identities=22% Similarity=0.157 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 55 TQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
|-++.+|||++=.+... .+....=-..+.-+.++ .+...--=||-| .|--+|++..+++.-.|+||.|++.
T Consensus 2 tpeE~qlle~lf~rlk~--a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ------~vliqE~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 2 TPEEKQLLENLFHRLKK--AEANERDPQAEALIAEAVAKQPDAAYYLAQ------RVLIQEQALKKASTQIKELEKRIAI 73 (233)
T ss_pred CHHHHHHHHHHHHHHhh--cccCCCChHHHHHHHHHHhcCCchHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777765332211 11111111223334444 555555556655 4555788999999999999999998
Q ss_pred hhh
Q psy8908 134 LEK 136 (137)
Q Consensus 134 le~ 136 (137)
+++
T Consensus 74 lq~ 76 (233)
T COG3416 74 LQA 76 (233)
T ss_pred Hhc
Confidence 875
No 260
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.98 E-value=3.8e+02 Score=22.51 Aligned_cols=55 Identities=4% Similarity=-0.077 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
........++..++..+ ..+.+.+.+-.++.++.....+++..-.+-.++.+.|-
T Consensus 52 ~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 52 AAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred hhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555666666666 66666666666666666666666666666666665553
No 261
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.97 E-value=2.5e+02 Score=20.01 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+.|-++|+.|..++..|......++.
T Consensus 9 ~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 9 QILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 262
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.97 E-value=3.1e+02 Score=24.20 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 71 TKYSDMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
.+..+++..-+.+++.+..+ ...+. .+....++.+|-+++..||+....++
T Consensus 44 ~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 44 SEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554 33333 45566666666667766666655544
No 263
>KOG3684|consensus
Probab=25.91 E-value=3.9e+02 Score=24.85 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 59 YEVLEKMNNATITKY--SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 59 y~LLE~mN~~~s~kY--~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
-++|..+|.--+-|. -++.+.++++..-.+-- ..|+-++...+.=|++|.+++.||.-...
T Consensus 396 RkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~ 459 (489)
T KOG3684|consen 396 RKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEA 459 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655444333 34555566665555555 77777888888888888888888764433
No 264
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=25.90 E-value=80 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy8908 107 YDSVLKLEQAAYKLD 121 (137)
Q Consensus 107 e~~V~~LE~~a~~LD 121 (137)
|+.+..||.+|..|+
T Consensus 13 E~~l~eLE~IV~~LE 27 (81)
T COG1722 13 EEALAELEEIVESLE 27 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 265
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=25.87 E-value=4.4e+02 Score=23.29 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy8908 31 PRLNELATNMFKKTADYLIGELSSTQADYEVLE 63 (137)
Q Consensus 31 ~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE 63 (137)
+.|.+|++++ +.+..|+.-+ .....|.-|+
T Consensus 7 ~~~~~~~~~~-~~~~~~~~l~--~~~~~~~~l~ 36 (367)
T PRK00578 7 ERLKDLDEKL-ENIRGVLDVD--ALKERLEELE 36 (367)
T ss_pred HHHHHHHHHH-HHHHhhCCHH--HHHHHHHHHH
Confidence 3455655543 6666776644 2234444444
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=6.1e+02 Score=24.46 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..|..|..|+.-...=..-..+|+.|+..+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455666555544
No 267
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.53 E-value=4.2e+02 Score=22.45 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy8908 36 LATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 36 la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L 90 (137)
++..|+..+.+--.++-.....+. .|.+.|+..-.++..+.+...++.+.+.+.
T Consensus 30 l~~~~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 30 LAGVMLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554455555555666 555666666666666666666666555554
No 268
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.50 E-value=72 Score=27.47 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
+.|..+.++||+||.++-+|
T Consensus 3 ~~L~~lR~~ID~iD~~iv~L 22 (374)
T PRK11199 3 AELTALRDQIDEVDKQLLEL 22 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998776
No 269
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=25.28 E-value=90 Score=24.83 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.1
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
..--+|+||+++|+.--.+=.- -+..++|.|.+.|
T Consensus 84 ~~~~eLqPYFdKLN~~~SsK~v--lt~~E~d~y~eAL 118 (162)
T PF12207_consen 84 KLTMELQPYFDKLNGHKSSKEV--LTQEEYDQYIEAL 118 (162)
T ss_dssp HHHHHHHHHHHHHTT---HHHH--S-HHHHHHHHHHH
T ss_pred HHHHhcchHHHHhcCCcchhhh--cCHHHHHHHHHHH
Confidence 4456799999999987333222 3456788887776
No 270
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=25.25 E-value=2.5e+02 Score=19.88 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhhhhhh-hhh-----HhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAY-----KQLIPQL-EQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky-----~~l~pyl-~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
..+.+....+......+ ... .-|..|+ ..|..+.+.+..++......|.+..+++.
T Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~ 119 (194)
T cd07307 57 EKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKK 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 322 3367777 78888888888888888888888877764
No 271
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.16 E-value=2.7e+02 Score=20.12 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.++...++.+..+.+-+.+|-.-.+.+..+++.+.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666677777777777777776654
No 272
>KOG0161|consensus
Probab=25.12 E-value=9.2e+02 Score=26.32 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 45 ADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQ----LIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 45 s~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~----l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
..-+..++.-....+.-.+..|.....++.++.+....+...+.++ ..... ....-.+|...++.+..++....+
T Consensus 903 k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~k 982 (1930)
T KOG0161|consen 903 KQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISK 982 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777778888888888888888888887777766 33222 334455666777777777777777
Q ss_pred HHHHHHHHHHHHHhh
Q psy8908 120 LDHYAKRLEAKFKQL 134 (137)
Q Consensus 120 LD~Ysk~LE~K~k~l 134 (137)
|-.=-|.||.+.+.+
T Consensus 983 L~kekk~lEe~~~~l 997 (1930)
T KOG0161|consen 983 LSKEKKELEERIREL 997 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766654
No 273
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.01 E-value=5.5e+02 Score=23.72 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 110 VLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 110 V~~LE~~a~~LD~Ysk~LE 128 (137)
+...+.+...|+.+...|.
T Consensus 482 ~~~~~~~~~~l~~~~~~l~ 500 (650)
T TIGR03185 482 ITIADKAKKTLKEFREKLL 500 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 274
>KOG0860|consensus
Probab=24.91 E-value=3.1e+02 Score=20.71 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 80 TVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 80 a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
..-+..+++.. ++.+.|...-+.=|+++..-+.++..|.+|
T Consensus 42 v~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~kl 83 (116)
T KOG0860|consen 42 VDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKL 83 (116)
T ss_pred HHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666 666666555555555555555555555444
No 275
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=24.86 E-value=5.4e+02 Score=23.54 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHH-HHHHHH
Q psy8908 29 HDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQL-EQIDQI 106 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl-~qID~I 106 (137)
+..-|......=++.|..++.|+..-+-.=-.|-+-||.....-+.-+.+...+|.+.+..| .+...+..-+ +....+
T Consensus 373 De~KL~~al~~~p~~v~~~F~gd~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~~~ 452 (483)
T COG1345 373 DEAKLKAALNEDPDSVREFFGGDGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEAAEERY 452 (483)
T ss_pred CHHHHHHHHHhChHHHHHHhcCCccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458888888899999999993333333336667777777666677777777788777777 6666654333 233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 107 YDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 107 e~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
..+-..|+.+..++..-...|-..|-.+
T Consensus 453 ~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 453 KTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566667777766666666665555443
No 276
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=24.82 E-value=2.1e+02 Score=18.89 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 108 DSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 108 ~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+.+..||.-+.-|=+|.--|.
T Consensus 29 ~~i~RLE~H~ETlRk~mv~L~ 49 (57)
T PF02346_consen 29 EAIKRLEHHIETLRKYMVILA 49 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433434433333
No 277
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.62 E-value=64 Score=22.21 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+|+.+...+..+.-+....+.|.
T Consensus 28 Leesl~lyeeG~~L~k~C~~~L~ 50 (76)
T PRK14063 28 LEEAISYFKEGMELSKLCDEKLK 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444443
No 278
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.57 E-value=5e+02 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=33.7
Q ss_pred ccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy8908 16 LSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLE 63 (137)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE 63 (137)
.+|.|.+=|-.-|+..++.+-..++-.++...++.-+......++-|.
T Consensus 243 a~TPtaaae~~~p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~ 290 (432)
T TIGR00237 243 APTPSAAAEIVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLV 290 (432)
T ss_pred CCCcHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888887777777777777777777776655555443
No 279
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.34 E-value=64 Score=22.31 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+|+.+..+|..+.-+-...+.|+
T Consensus 29 Leesl~lyeeG~~L~k~C~~~L~ 51 (76)
T PRK14068 29 LEESLDLYQRGMKLSAACDTTLK 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555544444444443
No 280
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=24.08 E-value=5.2e+02 Score=23.09 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-h------hhHhhHHHHHHHHHHHHHHHHH------------H
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-P------AYKQLIPQLEQIDQIYDSVLKL------------E 114 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~------ky~~l~pyl~qID~Ie~~V~~L------------E 114 (137)
-...+..+..+|-+.....=......-..+...+..| + ....|..-.+.+|+|+..-..+ .
T Consensus 364 l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~ 443 (473)
T PF14643_consen 364 LSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASSEEKLKEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYPE 443 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444443333333333444444433 2 2233444445566666655444 2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 115 QAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 115 ~~a~~LD~Ysk~LE~K~ 131 (137)
.+...++.|+..|-.-|
T Consensus 444 ~i~~e~~~Y~~~l~~~f 460 (473)
T PF14643_consen 444 MILKELESYSESLCQFF 460 (473)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455666666665444
No 281
>KOG4438|consensus
Probab=24.06 E-value=5.7e+02 Score=23.52 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 71 TKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
....+...++.+.++..+.+ .+-..+...+.-=|+|+-.+.+++.+. .++.|+|+|-.-.++.+
T Consensus 286 ~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk-~~e~~~kqL~~~~kek~ 350 (446)
T KOG4438|consen 286 KELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLK-MFENLTKQLNELKKEKE 350 (446)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455555666666666666 666667777777777787777777654 67788888765554443
No 282
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.01 E-value=3.7e+02 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+..-...+..+..|+.-...+...+..|+.++..|++
T Consensus 90 Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ 127 (219)
T TIGR02977 90 ALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQA 127 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677777777777777777777777777764
No 283
>KOG0612|consensus
Probab=23.94 E-value=6.4e+02 Score=26.34 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
..+.|..+|-++...+..+++....|..+...|....+.+
T Consensus 568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~ 607 (1317)
T KOG0612|consen 568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKL 607 (1317)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777766666555443
No 284
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.92 E-value=66 Score=22.17 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
+|+.+..+|..+.-+-...+.|+
T Consensus 27 Leesl~lyeeG~~L~k~C~~~L~ 49 (75)
T PRK14066 27 LDDSLKAFEEGVKHAAFCSKKLD 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444443
No 285
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=23.86 E-value=1.6e+02 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=10.5
Q ss_pred HhhhHHHHHHHHHhhhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV 90 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L 90 (137)
.|.++..-...|...+++|
T Consensus 4 ~~l~fe~~i~~l~~~i~~l 22 (319)
T PRK05724 4 NYLDFEKPIAELEAKIEEL 22 (319)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 3555555555555555555
No 286
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=23.85 E-value=2.1e+02 Score=22.10 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hh-hH--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 71 TKYSDMKQITVNISFSSARV-PA-YK--QL-IPQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~k-y~--~l-~pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
.+-.+++..|..+...+... .+ +- -. ...+.-+..+|+=+..++.++..|.-|.
T Consensus 47 ~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~ 105 (214)
T PF01865_consen 47 EEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLSLYK 105 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666677766665554 32 10 01 2366777888888999999999998876
No 287
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.82 E-value=4e+02 Score=21.69 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=4.8
Q ss_pred ccCCCCCchHHHHHHHHH
Q psy8908 23 FEPMISHDPRLNELATNM 40 (137)
Q Consensus 23 ~~~~~~~~~~l~~la~~m 40 (137)
.+.-.++.++|+....++
T Consensus 157 ~e~~~~~~~dL~~~L~ei 174 (312)
T PF00038_consen 157 VEVDQFRSSDLSAALREI 174 (312)
T ss_dssp ----------HHHHHHHH
T ss_pred eeecccccccchhhhhhH
Confidence 343335566666665555
No 288
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=23.82 E-value=94 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=13.4
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~ 111 (137)
.++...++.+|+||++|.
T Consensus 12 ~d~~~i~~rLd~iEeKVE 29 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVE 29 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777888888888764
No 289
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.27 E-value=1.7e+02 Score=21.33 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKR 126 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~ 126 (137)
.-+++.+|+.++.+|+.+...|+.....
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVDLRGR 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458888888999998888888876543
No 290
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=23.13 E-value=1.5e+02 Score=21.96 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~ 115 (137)
-|.+|..+.++.++++.+
T Consensus 63 Ty~~Q~k~Ye~a~~~~~~ 80 (104)
T PF11460_consen 63 TYMQQRKDYEEAVDQLTN 80 (104)
T ss_pred cHHHHHHHHHHHHHHHhH
Confidence 366666666666655543
No 291
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.93 E-value=4.3e+02 Score=23.04 Aligned_cols=19 Identities=5% Similarity=0.216 Sum_probs=12.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy8908 54 STQADYEVLEKMNNATITK 72 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~k 72 (137)
++.+|+...-.+-..|+.+
T Consensus 191 ~~~e~l~~F~~l~~~T~~R 209 (406)
T PF02388_consen 191 GSREELDDFYDLYKETAER 209 (406)
T ss_dssp E-CHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 3457777777777777664
No 292
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=22.92 E-value=1.7e+02 Score=20.37 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
-..+++++|++++..|++....|+.+
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 75 ILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888777764
No 293
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=5.6e+02 Score=22.96 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=3.9
Q ss_pred hHhhHHHHHHH
Q psy8908 93 YKQLIPQLEQI 103 (137)
Q Consensus 93 y~~l~pyl~qI 103 (137)
|.++.....+|
T Consensus 52 ~~~~~~~~~~l 62 (363)
T COG0216 52 YREYKKAQEDL 62 (363)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 294
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=22.73 E-value=2.2e+02 Score=19.74 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~ 122 (137)
..-+-+++..++.++..|+++...||.
T Consensus 75 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 75 LEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788888888888877764
No 295
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.70 E-value=5.9e+02 Score=23.20 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy8908 30 DPRLNELATNMFKKTADY 47 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Y 47 (137)
.+++...-.+|-.++.+.
T Consensus 9 ~edl~~~I~~L~~~i~~~ 26 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEEL 26 (593)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 456777666666666553
No 296
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.68 E-value=2.6e+02 Score=23.46 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
...+++|+.+.......+.+||...++|+.=+...+
T Consensus 28 r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k 63 (236)
T PF12269_consen 28 RKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAK 63 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888876655443
No 297
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=22.68 E-value=4.2e+02 Score=22.39 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.++.||-||=-.++-||.+...|++|...+-
T Consensus 90 ~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~ 120 (311)
T PF04091_consen 90 LNLSQIVQIVINLEYLEKACKELEEFLSSLR 120 (311)
T ss_dssp S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 6889999999999999999999999887665
No 298
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.53 E-value=4.3e+02 Score=22.50 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred Hhhhhhcc
Q psy8908 48 LIGELSST 55 (137)
Q Consensus 48 l~~El~~t 55 (137)
++.+++.+
T Consensus 14 l~~~~~~~ 21 (314)
T PF04111_consen 14 LDKQLEQA 21 (314)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 299
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.53 E-value=1.8e+02 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=20.7
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhh-HHHHHHHHHHHHHHHHH
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQL-IPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l-~pyl~qID~Ie~~V~~L 113 (137)
.|.++..-...|...+.+| .....- ...-++|..+++++.++
T Consensus 4 ~~~~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 47 (316)
T TIGR00513 4 NYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVEL 47 (316)
T ss_pred chhhhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHH
Confidence 3556666666666666666 422221 12234455555555444
No 300
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.53 E-value=2.8e+02 Score=25.57 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=9.8
Q ss_pred HHhhhHHHHHHHHHhhhhhh
Q psy8908 71 TKYSDMKQITVNISFSSARV 90 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L 90 (137)
.+..+....++.+++.+..|
T Consensus 69 SALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444
No 301
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=22.52 E-value=1.5e+02 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy8908 109 SVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 137 (137)
Q Consensus 109 ~V~~LE~~a~~LD~Ysk~LE~K~k~le~~ 137 (137)
.++++|+.+++|-.-+.+|-.|+....||
T Consensus 46 ~~~ege~~~qkL~eqteeLK~kvqe~sk~ 74 (106)
T PF12443_consen 46 KIREGEQMIQKLGEQTEELKDKVQEFSKR 74 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45778888888888888888888877664
No 302
>KOG4593|consensus
Probab=22.33 E-value=5.8e+02 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8908 110 VLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 110 V~~LE~~a~~LD~Ysk~LE~ 129 (137)
-..++++|..+|.|+...|+
T Consensus 435 reqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 435 REQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred HHHHHHHHHHHHHhhHhhhh
Confidence 34444444444444444443
No 303
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=22.22 E-value=6.8e+02 Score=23.75 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 67 NATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.....-|..+.+....+.+.+.+. .+...++..|.+|-..|-+-. ..|+.|.++|..--+-|++
T Consensus 371 ~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Ar------e~l~~~~~~l~eikR~mek 435 (570)
T COG4477 371 EAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAR------ENLERLKSKLHEIKRYMEK 435 (570)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777777 777777777777766554332 3566666666655555554
No 304
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.18 E-value=8e+02 Score=24.55 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLE----QIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~----qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+.+++........-|++--.....+..++......+...+..+ .+..++...+. .+..++..+..++.-...|+.
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~ 891 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhh
Q psy8908 123 YAKRLEAKFKQLEK 136 (137)
Q Consensus 123 Ysk~LE~K~k~le~ 136 (137)
--..++.++..++.
T Consensus 892 ~l~~~~~~~~~~~~ 905 (1163)
T COG1196 892 ELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHH
No 305
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=22.14 E-value=4.4e+02 Score=21.55 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=45.9
Q ss_pred ccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH--HHhhhHHHHHHHHHhhhhhh-hhhH
Q psy8908 18 TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATI--TKYSDMKQITVNISFSSARV-PAYK 94 (137)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s--~kY~~m~~~a~~l~~~~~~L-~ky~ 94 (137)
||.++|+++-....+=.+. +.-+.+|++--.++=.+==+-|.++.+... ..|.-++..-..+...++.+ ..-.
T Consensus 2 ~~~~G~~~l~~r~~~g~~~----c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~ 77 (242)
T cd07671 2 TLNTGYEILLQRLLDGRKM----CKDVEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHI 77 (242)
T ss_pred CcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888754444443444 444555554322222222234444444432 22333333333333333333 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+. ..|...|..|++.....-.=.|.+|.-|++++
T Consensus 78 ~ia------~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~q 112 (242)
T cd07671 78 QLA------GMLREELKSLEEFRERQKEQRKKYEAVMERVQ 112 (242)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22333344445555444444555555444443
No 306
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.12 E-value=1e+02 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~ 111 (137)
..+...++.+|+||++|+
T Consensus 15 ~d~~~i~~rLD~iEeKVE 32 (77)
T PRK01026 15 KDFKEIQKRLDEIEEKVE 32 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677888888888764
No 307
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.05 E-value=1.8e+02 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
+-.-+++..|+.++..|..+-..|+.+
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888887754
No 308
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=21.98 E-value=5e+02 Score=22.07 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHh------hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHH-
Q psy8908 32 RLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKY------SDMKQITVNISFSSARV-PAYKQLIPQLEQI- 103 (137)
Q Consensus 32 ~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY------~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qI- 103 (137)
.++..+.+|...|...=.|++.....++ ...|+..--... .=++.....+...++.+ .+|..+...++.|
T Consensus 27 ~~a~~s~~iL~~v~~~d~~~vg~~L~~L--~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~ 104 (333)
T PF05816_consen 27 KIAQFSDRILDRVRNKDSGEVGELLNEL--RKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKII 104 (333)
T ss_pred HHHHHHHHHHHHHHHhccchHhHHHHHH--HHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666555444444443332 223332222221 11111333344566666 6776666655554
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 104 -------DQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 104 -------D~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+.+...+..|+..-..+=.|.++|+.
T Consensus 105 ~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~ 137 (333)
T PF05816_consen 105 AELESGQDELLRDNAMLDQLYEKNWEYYQELEK 137 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455544444444444443
No 309
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=21.98 E-value=2e+02 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a 117 (137)
..|+.|+.-|.+||+++...+...
T Consensus 184 ~kLd~yl~sireiE~rl~~~~~~~ 207 (302)
T PF07586_consen 184 QKLDQYLDSIREIEKRLQQAEAWA 207 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 559999999999999997776654
No 310
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.96 E-value=5.5e+02 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q psy8908 31 PRLNELATNMFKK 43 (137)
Q Consensus 31 ~~l~~la~~mf~k 43 (137)
|.+.+..+++...
T Consensus 330 ~~l~~~~~~l~~~ 342 (451)
T PF03961_consen 330 PELKEKLEELEEE 342 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 4554444433333
No 311
>KOG0980|consensus
Probab=21.91 E-value=8.4e+02 Score=24.68 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLI----PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~----pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
...|.++...+.-....-+.+ .+|.+|. ..+.+-|+|-++++-=++....+++--..|.-.+.++++
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334778888877777777778 8887765 468888999999888888888888888888777776654
No 312
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=21.87 E-value=2.4e+02 Score=19.38 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy8908 77 KQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAY--KLDHY 123 (137)
Q Consensus 77 ~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~--~LD~Y 123 (137)
.++...++..++.| .+.=...|-.++.|-+.+..+|.+|. .|-.|
T Consensus 20 ~~I~~~~~~i~~~l--d~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~Y 66 (70)
T PF10372_consen 20 EQIEEEISQIIQTL--DEDDCCLLCEFEEIREKFLDIQTLASSYYLQCY 66 (70)
T ss_dssp HHHHHHHHHHHHHT--T-TT--GGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccCCceechhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 22334568889999999999998774 44444
No 313
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=21.85 E-value=5.8e+02 Score=22.80 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V-~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
..+.....+|.+++..+ +.++... ..+..++.++ .+|++...+.|.=...+|++|..+
T Consensus 337 ~~~~~~~~~L~~f~~~~~~lwd~h~---~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~ 396 (473)
T PF14643_consen 337 KQTEAQSEDLFKFFQEAAQLWDEHR---KKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIA 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555555555 5554433 3333344443 456777777777777777777654
No 314
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.82 E-value=2.2e+02 Score=18.01 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=7.7
Q ss_pred HhhhHHHHHHHHHhhhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV 90 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L 90 (137)
++..+..-.......++.+
T Consensus 42 ~~~~~~~ei~~~~~~l~~l 60 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESL 60 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHH
Confidence 3444444444444444443
No 315
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.79 E-value=93 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLE----QAAYKLDHYAK 125 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE----~~a~~LD~Ysk 125 (137)
..|..+..+||+||.++-+|= .+|.++-+|-+
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~ 39 (360)
T PRK12595 4 EELEQLRKEIDEINLQLLELLSKRGELVQEIGEEKT 39 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999988773 35555555443
No 316
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=21.75 E-value=1.7e+02 Score=21.90 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAK----RLEAKFKQ 133 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk----~LE~K~k~ 133 (137)
-+.+++|+.+...+|.=+.+++.|+. .|..+|++
T Consensus 80 ~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~l~ref~~ 117 (118)
T PRK10697 80 SELLDEVDRELAAGEQRLREMERYVTSDTFTLRSRFRQ 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhc
Confidence 34566666666666666666666664 34455544
No 317
>KOG3251|consensus
Probab=21.74 E-value=1.4e+02 Score=24.70 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 73 YSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
|.--...+..+...+..+++....++-..-+..|..+|.++..-.+.||.++++...+.
T Consensus 5 y~~t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~ 63 (213)
T KOG3251|consen 5 YQSTNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKS 63 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCc
Confidence 44444555566666666633333356666677777888888888888888877665443
No 318
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.71 E-value=2.6e+02 Score=18.76 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
.|+.++++-..|.+.+...-.-+++|..+
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666666666666666666666544
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.62 E-value=5.2e+02 Score=22.21 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=17.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
|.+++=..++-|||-+-+.+..||.....|+.-
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re 134 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQRE 134 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555443
No 320
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.62 E-value=3.3e+02 Score=19.90 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=28.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
.+-+.....-..|+-|+..+..||.-...|..=.+.++.+++.+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556677777777777777777776667777766654
No 321
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.61 E-value=4e+02 Score=20.80 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..++..+-+.+.++..|++.+..+...+..|...+..++.
T Consensus 87 r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 87 REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888888888888777764
No 322
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=5.1e+02 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
.||+.|-.++..+..=+.++-+=.++|+.+++
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 323
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.53 E-value=4.4e+02 Score=21.30 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=63.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHH
Q psy8908 27 ISHDPRLNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQ 105 (137)
Q Consensus 27 ~~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~ 105 (137)
+....+|..=..+|-..+..|+.+=-........+...|+.-.. .+.+=..++..+.++..-| +........++++..
T Consensus 8 E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~-~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~ 86 (200)
T cd07639 8 EAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH-HGPKDPMMAECLEKFSDGLNHILDSHAELLEATQF 86 (200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777788887766777777777777776644 4555445777777777777 666666666666543
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 106 ---------IYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 106 ---------Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
+.+.|...=+.=.+.|..+..+++.
T Consensus 87 ~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~a 120 (200)
T cd07639 87 SFKQQLQLLVKEDLRGFRDARKEFERGAESLEAA 120 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHH
Confidence 2333333334444455555554443
No 324
>KOG1937|consensus
Probab=21.48 E-value=6.8e+02 Score=23.43 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 78 QITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 78 ~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+.+..|...++.+.+...-..|.+-|-+|+..|++.++=++++=.=+++|-...+.+.
T Consensus 366 el~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555334446679999999999999999999888888888876665543
No 325
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=21.21 E-value=1.7e+02 Score=20.76 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.+..+.-|+.||..++.++.. |.|+..+
T Consensus 11 ll~RL~RIeGQv~gI~~Miee-~~~C~dI 38 (90)
T PRK15039 11 LKARASKIQGQVVALKKMLDE-PHECAAV 38 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHH
Confidence 444555555555555555543 4444433
No 326
>KOG0612|consensus
Probab=21.15 E-value=7.8e+02 Score=25.75 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
-++.++..+..+.+++..+|+.-+..+..+-+-+..+..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777766666644443
No 327
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.05 E-value=4.5e+02 Score=21.27 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.+++.+++.++..++++..+.+++-+.|
T Consensus 82 ~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 82 KKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444433333
No 328
>KOG0161|consensus
Probab=21.02 E-value=1.1e+03 Score=25.76 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 45 ADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 45 s~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
.+=+..++.++..+..=++.........|.++.+....+.+.-+.+ ..++..+..++++.+..|.+||.....|+.=.
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l--~~ei~dl~~~~~e~~k~v~elek~~r~le~e~ 1528 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNL--SQEIEDLEEQKDEGGKRVHELEKEKRRLEQEK 1528 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777766555555544444 22345566677777777777777777776666
Q ss_pred HHHHHHHHhhh
Q psy8908 125 KRLEAKFKQLE 135 (137)
Q Consensus 125 k~LE~K~k~le 135 (137)
..|-..+.+++
T Consensus 1529 ~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1529 EELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 329
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.01 E-value=6.2e+02 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhh-hhhHhhHHHHH
Q psy8908 78 QITVNISFSSARV-PAYKQLIPQLE 101 (137)
Q Consensus 78 ~~a~~l~~~~~~L-~ky~~l~pyl~ 101 (137)
.++.-+......| .-..+++.|++
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~ 290 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLD 290 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444 44444444443
No 330
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.92 E-value=2.4e+02 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+.|+.++.++..|++-+..|..-..++-+.|.+..
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333344444444433
No 331
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.86 E-value=2.6e+02 Score=21.43 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKL 113 (137)
Q Consensus 102 qID~Ie~~V~~L 113 (137)
||..-++++..|
T Consensus 35 ql~~~d~~i~~L 46 (155)
T PF06810_consen 35 QLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 332
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=20.86 E-value=97 Score=22.08 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 82 NISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 82 ~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
.+-..++.. +....|-+.++.++.+++++..|=.++-.||
T Consensus 28 Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeLe 68 (83)
T PF12095_consen 28 ELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACELE 68 (83)
T ss_dssp HHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---EE
T ss_pred HHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceeee
Confidence 344455566 6678898999999999999998877776654
No 333
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.85 E-value=7.3e+02 Score=23.55 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=3.5
Q ss_pred CchHHHHH
Q psy8908 29 HDPRLNEL 36 (137)
Q Consensus 29 ~~~~l~~l 36 (137)
...+|.++
T Consensus 177 t~~nL~r~ 184 (1179)
T TIGR02168 177 TERKLERT 184 (1179)
T ss_pred HHHHHHHH
Confidence 34444443
No 334
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=20.84 E-value=2.2e+02 Score=17.45 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHhhhhhh-h-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-P-AYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~-ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
.+++.-...|.-.++-| . ....-+...+.++.|...+..+..++..|=.|++
T Consensus 11 Helr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 11 HELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777 5 2222223467888889999999999998887775
No 335
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.70 E-value=4.6e+02 Score=21.22 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.-....+......+... ..+..+....++...+.+++..|+.-..+++....+.
T Consensus 48 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en 102 (276)
T PRK13922 48 SPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAEN 102 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555 5555666666666666666666666666665554443
No 336
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.68 E-value=3.8e+02 Score=20.26 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHH-HHHHHhhhhhcc
Q psy8908 31 PRLNELATNMFKK-TADYLIGELSST 55 (137)
Q Consensus 31 ~~l~~la~~mf~k-vs~Yl~~El~~t 55 (137)
..+.+.|+.++-. ++.|-..+-+|.
T Consensus 13 ~~~~~~arqIWLAGLGA~ak~~~EG~ 38 (132)
T PF05597_consen 13 SDVRDSARQIWLAGLGAYAKAQEEGS 38 (132)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566677776666 666666554443
No 337
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.64 E-value=3.8e+02 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8908 116 AAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 116 ~a~~LD~Ysk~LE~K~k~l 134 (137)
.|..++.-++.||.+.-..
T Consensus 109 ~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQW 127 (143)
T ss_pred HhHHHHHHHHHHHhhHHHH
Confidence 3333444444444443333
No 338
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=20.63 E-value=2.1e+02 Score=17.22 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=13.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLE 114 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE 114 (137)
.....+.+.-..||.|+..+....
T Consensus 30 ~i~~~v~~Q~~~ld~i~~~~d~~~ 53 (66)
T smart00397 30 DMGTELEEQGEQLDRIEDNVDDAD 53 (66)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444555566666777776654433
No 339
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=20.53 E-value=1.6e+02 Score=25.71 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=13.4
Q ss_pred HhhhHHHHHHHHHhhhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV 90 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L 90 (137)
.|.++..-...|...+.+|
T Consensus 7 ~~l~fe~~i~el~~~i~~l 25 (322)
T CHL00198 7 HVPDFMKPLAELESQVEEL 25 (322)
T ss_pred cccchhhhHHHHHHHHHHH
Confidence 5667777777777777777
No 340
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.48 E-value=1e+02 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
+.|.++.++||+||.++-+|
T Consensus 5 ~~L~~lR~~ID~ID~~ii~L 24 (386)
T PRK10622 5 NPLLALREKISALDEKLLAL 24 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999998766
No 341
>PF13166 AAA_13: AAA domain
Probab=20.47 E-value=6.6e+02 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=18.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q psy8908 28 SHDPRLNELATNMFKKTADYLIGELSSTQADY 59 (137)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~Yl~~El~~t~~dy 59 (137)
|-.++..+.....|++..+-...+++.....|
T Consensus 265 ~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~ 296 (712)
T PF13166_consen 265 PLSEERKERLEKYFDEEYEKLIEELEKAIKKL 296 (712)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677775555555566554444
No 342
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=20.47 E-value=2.8e+02 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.155 Sum_probs=4.0
Q ss_pred HHHHhhhhhh
Q psy8908 81 VNISFSSARV 90 (137)
Q Consensus 81 ~~l~~~~~~L 90 (137)
.+++..++.|
T Consensus 50 qNmSqsievL 59 (101)
T PF12308_consen 50 QNMSQSIEVL 59 (101)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 343
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.41 E-value=3.2e+02 Score=19.20 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
-.-+++.+|++++..|+.+...|+...
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 79 LLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888887654
No 344
>PRK06443 chorismate mutase; Validated
Probab=20.30 E-value=1.1e+02 Score=24.72 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L 113 (137)
.++.+.++||+||.++-+|
T Consensus 6 dLeeLR~eID~ID~eIL~L 24 (177)
T PRK06443 6 DMEDLRSEILENTMDIIEL 24 (177)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998776
No 345
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=20.22 E-value=5.9e+02 Score=24.38 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhh
Q psy8908 68 ATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY-------------AKRLEAKFKQL 134 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y-------------sk~LE~K~k~l 134 (137)
....+|..|..-+..|.+.+.+- |... =|..-++|+....+.+|..+.+|..- ++++|++.+..
T Consensus 246 ~L~~k~~~L~~e~~~LK~ELied-RW~~--vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~ 322 (683)
T PF08580_consen 246 RLEKKWKKLEKEAESLKKELIED-RWNI--VFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKK 322 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hHHH--HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence 34556666666666665544332 2332 23444566666666666666666554 78888777653
No 346
>KOG1029|consensus
Probab=20.22 E-value=9.1e+02 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=20.6
Q ss_pred HHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy8908 47 YLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSA 88 (137)
Q Consensus 47 Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~ 88 (137)
.+.+|+.--...++=+.++|...+-+-..+.+-.........
T Consensus 483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~ 524 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK 524 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 333444444444555555565555555555555444443333
No 347
>smart00150 SPEC Spectrin repeats.
Probab=20.07 E-value=2.5e+02 Score=17.79 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy8908 125 KRLEAK 130 (137)
Q Consensus 125 k~LE~K 130 (137)
..|..+
T Consensus 80 ~~l~~~ 85 (101)
T smart00150 80 EELNER 85 (101)
T ss_pred HHHHHH
Confidence 333333
Done!