Query psy8908
Match_columns 137
No_of_seqs 70 out of 72
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:34:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 92.6 3.9 0.00013 34.0 14.0 26 28-53 345-370 (471)
2 2ieq_A S glycoprotein, spike g 92.1 0.43 1.5E-05 34.6 6.3 61 68-128 26-103 (109)
3 2avr_X Adhesion A; antiparalle 90.6 2.9 9.8E-05 30.6 9.5 85 48-135 7-95 (119)
4 4dac_A Computationally designe 86.8 0.69 2.4E-05 25.6 3.0 19 117-135 3-21 (28)
5 3etw_A Adhesin A; antiparallel 84.4 9.8 0.00033 27.7 11.7 83 48-133 7-100 (119)
6 2dfs_A Myosin-5A; myosin-V, in 82.4 16 0.00055 34.7 12.1 76 54-129 967-1044(1080)
7 2l5g_B Putative uncharacterize 82.2 3.7 0.00013 25.0 5.2 33 97-129 5-37 (42)
8 1zke_A Hypothetical protein HP 80.0 1.3 4.3E-05 30.6 2.8 76 39-126 2-77 (83)
9 1m1j_B Fibrinogen beta chain; 78.0 35 0.0012 29.8 14.1 65 70-134 127-194 (464)
10 3ghg_C Fibrinogen gamma chain; 78.0 33 0.0011 29.6 13.1 42 95-136 92-133 (411)
11 3axj_B TRAX, translin associat 74.8 14 0.00047 30.2 8.2 72 43-120 194-271 (298)
12 3qb5_K Translin-associated pro 73.6 13 0.00046 30.1 7.8 72 43-120 183-260 (290)
13 2akf_A Coronin-1A; coiled coil 72.7 5.6 0.00019 22.7 3.7 28 105-132 3-30 (32)
14 2oqq_A Transcription factor HY 71.0 7.5 0.00026 23.6 4.3 25 111-135 6-30 (42)
15 4dnd_A Syntaxin-10, SYN10; str 70.9 25 0.00087 25.4 8.0 28 21-48 24-51 (130)
16 4gif_A Polycystic kidney disea 70.6 11 0.00037 23.2 5.0 34 93-129 6-39 (45)
17 3bas_A Myosin heavy chain, str 68.7 24 0.00081 23.7 9.0 62 72-136 22-84 (89)
18 3ci9_A Heat shock factor-bindi 68.5 6.2 0.00021 24.5 3.6 40 78-117 6-47 (48)
19 2v71_A Nuclear distribution pr 68.3 40 0.0014 26.2 11.7 64 72-135 57-122 (189)
20 3t98_B Nucleoporin NUP58/NUP45 68.3 15 0.00051 25.4 6.0 30 86-115 9-40 (93)
21 4h9n_C Death domain-associated 67.7 21 0.00071 28.3 7.4 56 24-79 123-198 (212)
22 2no2_A HIP-I, huntingtin-inter 67.3 29 0.001 24.3 10.0 65 58-132 3-68 (107)
23 3ghg_B Fibrinogen beta chain; 67.1 66 0.0022 28.2 11.3 34 102-135 157-190 (461)
24 3oja_B Anopheles plasmodium-re 64.7 39 0.0013 28.5 9.1 10 126-135 569-578 (597)
25 1m1j_C Fibrinogen gamma chain; 64.4 68 0.0023 27.4 12.6 26 109-134 106-131 (409)
26 1ez3_A Syntaxin-1A; three heli 61.3 20 0.00067 24.5 5.6 23 73-95 14-37 (127)
27 2v66_B Nuclear distribution pr 59.6 45 0.0015 23.8 9.4 65 72-136 4-70 (111)
28 3te3_A Polycystic kidney disea 59.0 11 0.00037 22.5 3.3 33 93-128 6-38 (39)
29 2dfs_A Myosin-5A; myosin-V, in 58.7 1.1E+02 0.0037 29.2 11.7 37 95-131 1031-1072(1080)
30 3hrn_A Transient receptor pote 58.2 32 0.0011 22.6 5.7 34 93-129 5-38 (64)
31 1deq_A Fibrinogen (alpha chain 56.7 96 0.0033 26.7 12.6 93 39-131 56-157 (390)
32 2yko_A LINE-1 ORF1P; RNA-bindi 54.7 31 0.001 27.7 6.3 35 101-135 13-47 (233)
33 3efg_A Protein SLYX homolog; x 53.7 29 0.001 23.0 5.2 23 102-124 15-37 (78)
34 2bez_C E2 glycoprotein; coiled 53.2 50 0.0017 22.4 6.9 48 68-115 27-76 (77)
35 4g2k_A General control protein 52.6 41 0.0014 24.7 6.1 36 95-130 22-57 (125)
36 1yo7_A Regulatory protein ROP; 52.0 39 0.0013 24.5 5.9 78 42-130 9-86 (120)
37 3axj_A GM27569P, translin; tra 51.7 54 0.0018 25.9 7.3 70 45-120 153-227 (249)
38 1x9b_A Hypothetical membrane p 50.7 20 0.00067 22.7 3.6 26 107-132 22-48 (53)
39 1m1j_B Fibrinogen beta chain; 50.0 1.3E+02 0.0044 26.2 11.2 21 101-121 175-195 (464)
40 1s94_A S-syntaxin; three helix 49.9 31 0.0011 25.2 5.3 25 111-135 81-105 (180)
41 3swy_A Cyclic nucleotide-gated 47.5 38 0.0013 20.7 4.5 12 107-118 4-15 (46)
42 1j1j_A Translin; testis/brain 47.4 39 0.0013 26.6 5.8 71 44-120 149-224 (240)
43 2d8d_A Aroag, phospho-2-dehydr 46.2 17 0.00057 24.0 3.0 19 95-113 4-22 (90)
44 4g1a_A AQ-C16C19 peptide; heli 46.2 8.8 0.0003 21.7 1.3 26 111-136 3-28 (32)
45 1fmh_A General control protein 45.9 39 0.0013 19.1 4.5 28 103-130 3-30 (33)
46 1nkd_A ROP; atomic resolution 45.8 52 0.0018 21.5 5.2 21 42-68 9-29 (65)
47 1zme_C Proline utilization tra 45.7 26 0.0009 21.4 3.7 21 102-122 45-65 (70)
48 3rmi_A Chorismate mutase prote 45.6 17 0.00059 25.5 3.2 20 94-113 12-31 (114)
49 4abx_A DNA repair protein RECN 45.3 48 0.0016 24.3 5.8 12 105-116 126-137 (175)
50 3ghg_B Fibrinogen beta chain; 45.3 39 0.0013 29.6 6.0 31 94-124 163-193 (461)
51 3ret_A Salicylate biosynthesis 45.1 14 0.00047 25.1 2.5 20 94-113 8-27 (101)
52 4abm_A Charged multivesicular 44.9 19 0.00066 24.0 3.1 23 98-120 56-78 (79)
53 3ogi_B ESXO, putative ESAT-6-l 44.1 81 0.0028 22.2 8.2 66 29-94 8-91 (99)
54 2ve7_C Kinetochore protein NUF 43.8 7.7 0.00026 30.9 1.2 60 76-135 143-203 (250)
55 1ybz_A Chorismate mutase; cons 43.5 20 0.0007 24.3 3.2 20 94-113 17-36 (91)
56 1gk4_A Vimentin; intermediate 43.2 69 0.0024 21.1 8.7 56 76-131 6-64 (84)
57 2c5k_T Syntaxin TLG1, T-snare 43.1 76 0.0026 21.6 8.8 40 97-136 39-89 (95)
58 1ecm_A Endo-oxabicyclic transi 42.8 19 0.00067 24.5 3.0 19 95-113 6-24 (109)
59 3ghg_A Fibrinogen alpha chain; 42.8 1.3E+02 0.0045 27.0 9.0 21 109-129 132-152 (562)
60 1ez3_A Syntaxin-1A; three heli 42.6 56 0.0019 22.1 5.4 31 40-71 10-40 (127)
61 2js5_A Uncharacterized protein 42.3 73 0.0025 21.1 6.3 36 62-103 12-47 (71)
62 1ci6_A Transcription factor AT 42.3 62 0.0021 20.3 6.6 47 66-115 10-58 (63)
63 1nkp_B MAX protein, MYC proto- 42.2 68 0.0023 20.7 6.3 62 72-135 20-81 (83)
64 4fla_A Regulation of nuclear P 42.1 29 0.00098 25.8 4.1 24 110-133 74-97 (152)
65 3gp4_A Transcriptional regulat 42.0 49 0.0017 23.6 5.2 30 100-129 87-116 (142)
66 3tnu_B Keratin, type II cytosk 41.8 88 0.003 21.9 11.5 58 74-131 53-113 (129)
67 3ezh_A Nitrate/nitrite sensor 41.5 19 0.00064 25.3 2.8 49 81-129 56-106 (125)
68 2vkl_A RV0948C/MT0975; helical 41.4 21 0.00071 24.0 2.9 19 95-113 13-31 (90)
69 1kd8_A GABH AIV, GCN4 acid bas 41.4 53 0.0018 19.2 4.3 28 104-131 4-31 (36)
70 3kqg_A Langerin, C-type lectin 41.3 53 0.0018 23.1 5.3 37 81-117 2-39 (182)
71 2qyw_A Vesicle transport throu 41.1 71 0.0024 21.8 5.7 24 98-121 46-69 (102)
72 2p90_A Hypothetical protein CG 41.1 54 0.0018 26.7 5.9 53 55-107 211-266 (319)
73 1l8d_A DNA double-strand break 40.9 79 0.0027 21.1 6.4 37 96-132 66-102 (112)
74 2er8_A Regulatory protein Leu3 40.7 14 0.00048 22.9 1.9 20 101-120 49-68 (72)
75 2z5i_A TM, general control pro 40.5 60 0.002 19.9 4.8 19 106-124 10-28 (52)
76 3onj_A T-snare VTI1; helix, HA 40.5 82 0.0028 21.2 6.3 42 77-120 11-53 (97)
77 1vcs_A Vesicle transport throu 39.8 64 0.0022 22.0 5.3 40 78-119 16-56 (102)
78 3zrx_A AF1503 protein, osmolar 39.8 64 0.0022 19.7 8.6 45 73-123 68-113 (115)
79 2ca5_A MXIH; transport protein 39.4 38 0.0013 23.3 4.0 31 48-78 46-76 (85)
80 2wam_A RV2714, conserved hypot 39.1 91 0.0031 26.0 7.1 71 57-127 253-342 (351)
81 3he4_A Synzip6; heterodimeric 38.5 50 0.0017 20.6 4.1 25 111-135 20-44 (56)
82 2efr_A General control protein 37.9 1.2E+02 0.0043 22.5 14.0 26 37-63 16-41 (155)
83 3zcc_A HAMP, osmolarity sensor 37.7 70 0.0024 19.6 7.4 44 74-123 69-113 (114)
84 3hnw_A Uncharacterized protein 37.7 1.1E+02 0.0039 22.0 14.4 102 30-133 27-135 (138)
85 1ykh_A RNA polymerase II media 37.6 1.1E+02 0.0037 21.7 8.5 46 86-131 60-106 (108)
86 3tnu_A Keratin, type I cytoske 37.5 1.1E+02 0.0036 21.6 10.2 58 74-131 55-115 (131)
87 3swy_A Cyclic nucleotide-gated 37.4 69 0.0024 19.5 5.3 29 73-101 7-36 (46)
88 3b5n_D Protein transport prote 36.3 81 0.0028 19.9 5.9 36 81-116 16-53 (64)
89 4dnd_A Syntaxin-10, SYN10; str 35.7 68 0.0023 23.1 5.1 27 102-128 68-94 (130)
90 1x8y_A Lamin A/C; structural p 35.3 97 0.0033 20.5 6.9 55 77-131 9-66 (86)
91 2p22_C Protein SRN2; endosome, 35.2 1.5E+02 0.0051 22.6 11.5 105 29-133 39-153 (192)
92 3c98_B Syntaxin-1A; protein co 34.8 41 0.0014 25.0 4.0 24 97-120 43-66 (279)
93 3t97_C Nuclear pore glycoprote 34.3 32 0.0011 22.2 2.9 38 91-128 16-53 (64)
94 3e35_A Uncharacterized protein 33.9 44 0.0015 27.6 4.3 53 56-108 215-273 (325)
95 3nmd_A CGMP dependent protein 33.8 1E+02 0.0035 20.4 6.9 42 91-132 23-64 (72)
96 1m1j_C Fibrinogen gamma chain; 33.7 2.2E+02 0.0076 24.2 10.1 10 58-67 39-48 (409)
97 3coq_A Regulatory protein GAL4 33.6 42 0.0014 21.2 3.4 20 101-120 45-64 (89)
98 3swf_A CGMP-gated cation chann 33.4 50 0.0017 22.1 3.8 43 75-117 4-48 (74)
99 1ic2_A Tropomyosin alpha chain 33.4 99 0.0034 20.1 7.1 10 120-129 64-73 (81)
100 2g0u_A Type III secretion syst 33.0 37 0.0013 23.6 3.2 50 29-78 28-82 (92)
101 1wyy_A E2 glycoprotein; membra 32.8 1.4E+02 0.0047 22.5 6.5 50 68-117 40-91 (149)
102 2fxo_A Myosin heavy chain, car 32.0 1.3E+02 0.0045 21.1 12.2 81 55-135 32-117 (129)
103 2p90_A Hypothetical protein CG 31.9 81 0.0028 25.7 5.6 55 37-96 214-269 (319)
104 3hls_A Guanylate cyclase solub 31.8 84 0.0029 20.0 4.6 18 117-134 23-40 (66)
105 3ajm_A Programmed cell death p 31.4 1.4E+02 0.0049 23.6 6.7 60 72-131 92-157 (213)
106 1q08_A Zn(II)-responsive regul 30.9 91 0.0031 20.1 4.8 29 98-126 43-71 (99)
107 3swf_A CGMP-gated cation chann 30.8 1.2E+02 0.0041 20.2 6.3 43 71-113 7-51 (74)
108 3pp5_A BRK1, protein brick1; t 30.8 1.2E+02 0.0041 20.2 5.5 17 101-117 52-68 (73)
109 1hwt_C Protein (heme activator 30.7 17 0.00059 22.9 1.1 20 101-120 58-77 (81)
110 3gpv_A Transcriptional regulat 29.9 1.5E+02 0.0051 21.0 6.9 33 98-130 99-131 (148)
111 2xdj_A Uncharacterized protein 29.7 1.3E+02 0.0043 20.2 7.6 42 95-136 21-66 (83)
112 2oqq_A Transcription factor HY 29.6 95 0.0033 18.7 4.6 27 103-129 5-31 (42)
113 1vjh_A BET V I allergen family 29.5 41 0.0014 23.3 3.0 38 13-50 79-119 (122)
114 3uun_A Dystrophin; triple heli 29.3 1.1E+02 0.0039 19.5 5.4 66 70-135 42-116 (119)
115 2lw1_A ABC transporter ATP-bin 29.1 63 0.0021 21.3 3.7 23 95-117 23-45 (89)
116 3hh0_A Transcriptional regulat 28.9 1.4E+02 0.005 21.1 6.0 29 99-127 85-113 (146)
117 3htk_B Structural maintenance 28.9 1.1E+02 0.0039 19.4 8.7 60 66-125 10-70 (73)
118 2v71_A Nuclear distribution pr 28.5 2E+02 0.0069 22.1 10.9 88 48-135 47-136 (189)
119 3iv1_A Tumor susceptibility ge 28.5 1.4E+02 0.0046 20.1 8.2 39 94-132 25-63 (78)
120 4fla_A Regulation of nuclear P 27.7 1.8E+02 0.0062 21.3 8.7 13 37-49 77-89 (152)
121 1dn1_B Syntaxin 1A, syntaxin b 27.6 1E+02 0.0035 24.1 5.3 19 116-134 78-96 (267)
122 3hgf_A Rhoptry protein fragmen 27.4 1.6E+02 0.0056 20.7 5.8 43 76-118 12-55 (107)
123 2cly_A ATP synthase B chain, m 27.3 2.2E+02 0.0076 22.2 11.0 26 43-68 77-102 (214)
124 3e35_A Uncharacterized protein 27.1 1.4E+02 0.0047 24.6 6.2 56 79-134 216-275 (325)
125 1jnm_A Proto-oncogene C-JUN; B 26.9 1.1E+02 0.0039 18.8 6.1 37 98-134 19-55 (62)
126 2gtv_X CM, chorismate mutase; 26.7 39 0.0013 23.5 2.4 17 95-111 4-20 (104)
127 2nps_B Syntaxin 13, vesicle-as 26.6 1.2E+02 0.0042 19.0 6.1 33 80-112 8-45 (71)
128 2aze_B Transcription factor E2 26.0 1.6E+02 0.0053 20.4 5.5 36 100-135 5-40 (106)
129 3csx_A Putative uncharacterize 25.6 1.6E+02 0.0054 19.9 6.7 53 62-114 24-77 (81)
130 2vz4_A Tipal, HTH-type transcr 25.6 83 0.0028 21.0 3.9 27 98-124 78-104 (108)
131 1lwu_B Fibrinogen beta chain; 25.2 1.5E+02 0.0052 24.3 6.1 21 102-122 36-56 (323)
132 2yo3_A General control protein 25.1 2.6E+02 0.0088 22.8 7.3 50 62-114 207-257 (268)
133 1lwu_C Fibrinogen gamma chain; 25.1 1.8E+02 0.006 24.0 6.5 19 102-120 34-52 (323)
134 3p8c_D Wiskott-aldrich syndrom 25.1 68 0.0023 26.2 3.9 43 81-123 42-86 (279)
135 1aq5_A Matrilin-1, CMP, cartil 24.9 86 0.0029 19.3 3.5 19 111-129 23-41 (47)
136 3u0c_A Invasin IPAB, 62 kDa an 24.9 2.4E+02 0.0084 21.9 7.4 56 62-120 87-143 (201)
137 3hd7_A Vesicle-associated memb 24.6 1.6E+02 0.0054 19.6 6.7 46 75-120 13-59 (91)
138 3na7_A HP0958; flagellar bioge 24.6 2.4E+02 0.0082 21.7 10.7 18 94-111 111-128 (256)
139 3caz_A BAR protein; thermo-aci 24.6 2E+02 0.0068 23.1 6.4 48 82-129 92-143 (294)
140 2ke4_A CDC42-interacting prote 24.6 1.5E+02 0.0051 20.3 5.1 31 100-130 61-91 (98)
141 1tw0_A Pathogenesis-related cl 24.5 47 0.0016 23.8 2.6 38 14-51 110-153 (157)
142 3nmd_A CGMP dependent protein 24.4 1.4E+02 0.0049 19.7 4.8 30 91-120 30-59 (72)
143 1sfc_A VAMP 2, protein (synapt 24.1 1.7E+02 0.0058 19.7 6.7 46 75-120 38-84 (96)
144 3rrk_A V-type ATPase 116 kDa s 24.0 2.7E+02 0.0091 22.0 8.6 16 72-87 64-79 (357)
145 3m0d_C TNF receptor-associated 23.7 1.4E+02 0.0048 18.7 4.9 12 125-136 51-62 (65)
146 1vp7_A Exodeoxyribonuclease VI 23.6 35 0.0012 24.0 1.6 37 91-127 34-74 (100)
147 1r8e_A Multidrug-efflux transp 23.5 1.2E+02 0.0042 22.7 5.0 33 98-130 83-115 (278)
148 2yo3_A General control protein 23.4 2.1E+02 0.0071 23.3 6.5 30 101-130 223-252 (268)
149 1c7c_A Protein (deoxyhemoglobi 23.3 2.2E+02 0.0074 22.0 6.5 69 29-103 117-188 (283)
150 2qim_A PR10.2B; trans-zeatin, 23.2 51 0.0017 23.5 2.6 37 14-50 111-153 (158)
151 1lwu_C Fibrinogen gamma chain; 23.1 2.1E+02 0.007 23.6 6.5 12 103-114 42-53 (323)
152 1lwu_B Fibrinogen beta chain; 23.1 94 0.0032 25.6 4.5 24 109-132 29-52 (323)
153 3pmk_N Phosphoprotein; chapero 23.0 29 0.00099 22.9 1.0 19 91-109 12-30 (68)
154 2no2_A HIP-I, huntingtin-inter 22.8 1.9E+02 0.0067 20.0 6.3 37 99-135 6-42 (107)
155 3mov_A Lamin-B1; LMNB1, B-type 22.7 1.8E+02 0.0063 19.7 7.7 52 80-131 21-75 (95)
156 2zdi_C Prefoldin subunit alpha 22.6 2.1E+02 0.0071 20.2 6.3 44 93-136 97-140 (151)
157 2wam_A RV2714, conserved hypot 22.6 1.1E+02 0.0039 25.4 4.9 52 81-132 255-307 (351)
158 1zxz_A PDF, peptide deformylas 22.5 90 0.0031 23.8 4.0 33 14-46 12-44 (197)
159 1t2k_D Cyclic-AMP-dependent tr 22.3 1.4E+02 0.0049 18.2 5.7 30 102-131 23-52 (61)
160 3va9_A Sensor histidine kinase 22.3 2.1E+02 0.0072 20.1 7.5 22 96-117 50-71 (164)
161 2flh_A Cytokinin-specific bind 22.3 40 0.0014 24.2 1.8 38 13-50 110-152 (155)
162 1t3u_A Conserved hypothetical 21.9 1.8E+02 0.0062 19.3 6.8 12 42-53 29-40 (104)
163 3u0c_A Invasin IPAB, 62 kDa an 21.9 2.6E+02 0.009 21.7 6.4 53 41-97 91-144 (201)
164 4i0x_B ESAT-6-like protein MAB 21.8 1.7E+02 0.0059 19.0 5.3 18 73-90 13-30 (103)
165 1xwj_B Talin, metavinculin; ce 21.7 1E+02 0.0034 16.2 3.1 20 31-50 4-23 (26)
166 4dvz_A Cytotoxicity-associated 21.6 4.2E+02 0.014 23.4 8.9 62 60-124 482-559 (569)
167 2pft_A Exocytosis protein; hel 21.6 1.8E+02 0.0061 25.1 6.1 41 94-134 25-75 (571)
168 1e09_A PRU AV 1; allergen, maj 21.4 59 0.002 23.2 2.6 38 14-51 111-154 (159)
169 2wql_A Major allergen DAU C 1; 20.7 62 0.0021 23.5 2.6 38 13-50 110-153 (154)
170 3mq9_A Bone marrow stromal ant 20.5 3.5E+02 0.012 22.0 13.7 27 108-134 443-469 (471)
171 1l4a_D S-SNAP25 fusion protein 20.2 2E+02 0.0067 19.0 5.5 25 91-115 48-72 (87)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.64 E-value=3.9 Score=34.02 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhh
Q psy8908 28 SHDPRLNELATNMFKKTADYLIGELS 53 (137)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~Yl~~El~ 53 (137)
|..|...+..+.+...+..++.|+.+
T Consensus 345 p~~p~~~~~~~~~~~~~~~vl~G~~t 370 (471)
T 3mq9_A 345 PNIPQMSAFWYAVRTAVINAASGRQT 370 (471)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555556666777888888754
No 2
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=92.06 E-value=0.43 Score=34.57 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh-hhhH--------hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV-PAYK--------QLI--------PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L-~ky~--------~l~--------pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.++.-|.++.++++..++.+.+| ++|. .++ .....||++|.+...|-.++.+|-.|...|-
T Consensus 26 tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n 103 (109)
T 2ieq_A 26 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQIN 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677999999999999999998 6554 233 4456899999999999999999998876653
No 3
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=90.56 E-value=2.9 Score=30.63 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=63.3
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSV---LKLEQAAYKLDHY 123 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V---~~LE~~a~~LD~Y 123 (137)
|-+.+..--.+|+.|++|=.. +|..-+.+|......+... ..|.++..-..+|-+..+.. .+.-.++.+-+.|
T Consensus 7 V~s~l~~LEaeyq~L~~kE~q---rynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~ 83 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEA---RFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 456677777889999988664 4999999999999999888 88888887777776644332 4556667777777
Q ss_pred HHHHHHHHHhhh
Q psy8908 124 AKRLEAKFKQLE 135 (137)
Q Consensus 124 sk~LE~K~k~le 135 (137)
.+.||.+++..+
T Consensus 84 ~~~Ld~eI~~qe 95 (119)
T 2avr_X 84 LKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766544
No 4
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=86.79 E-value=0.69 Score=25.62 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy8908 117 AYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 117 a~~LD~Ysk~LE~K~k~le 135 (137)
||+||.-+|+||..+-++|
T Consensus 3 vykldanvkrlekevgkle 21 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLE 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHhhhh
Confidence 6788888888888777765
No 5
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=84.43 E-value=9.8 Score=27.67 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=64.3
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHH----------HHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQ----------IYDSVLKLEQA 116 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~----------Ie~~V~~LE~~ 116 (137)
|.++++.--..|+.|++|= ..+|.+-+..|..-...+... ..|+.+..-+..|-+ ....|.+++.+
T Consensus 7 i~~~l~~Leae~q~L~~~E---~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~ 83 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQE---EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 5677778888888888764 578999999999999999999 999999888888854 45566677777
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8908 117 AYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 117 a~~LD~Ysk~LE~K~k~ 133 (137)
...||.=.+..+..+..
T Consensus 84 ~keLd~~ik~qekiIdn 100 (119)
T 3etw_A 84 LKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766666655443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.37 E-value=16 Score=34.74 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 54 STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQI-DQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 54 ~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qI-D~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
...++++.++.=+...-.+-..+.+....+...+..+ .-+..++.-.++. ++++++|..|++....|.+-.-.||.
T Consensus 967 ~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555666666666666555555 4444444433222 34445555555555555544444443
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=82.25 E-value=3.7 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+..+|+||-|+..|++-|+-+..|-.--+.||.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999988888777777774
No 8
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=79.99 E-value=1.3 Score=30.58 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 39 NMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAY 118 (137)
Q Consensus 39 ~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 118 (137)
.||+++-..+. +++.+.++.++|=+|-+..-.-|.-++.-.-++-.. .... -.-||+++|.+|-+.++
T Consensus 2 ~MFErid~ilk-~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~-----L~~~------~~~QideeV~~LKe~Id 69 (83)
T 1zke_A 2 HMFEKIRKILA-DIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKG-----VNEA------FFTQLSEEVERLKELIN 69 (83)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTT-----CCGG------GHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccc-----cCHH------HHHHHHHHHHHHHHHHH
Confidence 48888877665 688899999999999988888888776543332211 1111 23467789999999999
Q ss_pred HHHHHHHH
Q psy8908 119 KLDHYAKR 126 (137)
Q Consensus 119 ~LD~Ysk~ 126 (137)
.|..|-++
T Consensus 70 aLNK~Kke 77 (83)
T 1zke_A 70 ALNKIKKG 77 (83)
T ss_dssp HHHHHHGG
T ss_pred HHHHHHHH
Confidence 99988764
No 9
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=78.00 E-value=35 Score=29.82 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=41.5
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQ--IYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~--Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
...|........+....+++. ..++..+.|++.+.. +..++..|+..+..|..=...||.++..+
T Consensus 127 q~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 127 DNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555566 566666666665553 66777888888777777777777777654
No 10
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=77.99 E-value=33 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
+...|-..|..++.+|..|+.++...+.-...|+.++..++.
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888888888888888888888887765
No 11
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=74.82 E-value=14 Score=30.19 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=49.1
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh-----HHHHHHHHHHHHHHHHHHHH
Q psy8908 43 KTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL-----IPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 43 kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l-----~pyl~qID~Ie~~V~~LE~~ 116 (137)
...+||.|=...|.+=..+ -+|..+.+.|. .+..+..++++| .-+..| ....+++|.+-.+|.+.|.+
T Consensus 194 ~~edYLlGL~DLtGELmR~--ainsv~~Gd~~----~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v 267 (298)
T 3axj_B 194 DPTEYILGLSDLTGELMRR--CINSLGSGDTD----TCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENV 267 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HHHHHHTTCHH----HHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHH--HHHHHhccchH----hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3466777666655544443 35666666663 345566666666 555443 78889999999999999999
Q ss_pred HHHH
Q psy8908 117 AYKL 120 (137)
Q Consensus 117 a~~L 120 (137)
+|.|
T Consensus 268 ~Ydl 271 (298)
T 3axj_B 268 CYNV 271 (298)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9976
No 12
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=73.56 E-value=13 Score=30.12 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh-----HHHHHHHHHHHHHHHHHHHH
Q psy8908 43 KTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL-----IPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 43 kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l-----~pyl~qID~Ie~~V~~LE~~ 116 (137)
...+||.|=...|.+=..+ -+|..+.+.|. .+..+..++.+| .-+..| ....+++|.+..+|.++|.+
T Consensus 183 ~~eDYLlGL~DLtGELmR~--ainsv~~Gd~~----~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v 256 (290)
T 3qb5_K 183 TPVDYLLGVADLTGELMRM--CINSVGNGDID----TPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENA 256 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HHHHHHTTCSS----HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHhccchH----HHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Confidence 3456666655555444443 34555555553 344566666666 555444 36889999999999999999
Q ss_pred HHHH
Q psy8908 117 AYKL 120 (137)
Q Consensus 117 a~~L 120 (137)
+|-|
T Consensus 257 ~Ydl 260 (290)
T 3qb5_K 257 CYAL 260 (290)
T ss_dssp HHHH
T ss_pred hhhe
Confidence 9976
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=72.71 E-value=5.6 Score=22.68 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 105 QIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 105 ~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
.+|+.|.+|-.+|.+|-+-..+||.-+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888876543
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.99 E-value=7.5 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 111 LKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 111 ~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..||+-|..|+.--.+||.|+.-|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 15
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=70.94 E-value=25 Score=25.37 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=14.9
Q ss_pred CcccCCCCCchHHHHHHHHHHHHHHHHH
Q psy8908 21 SSFEPMISHDPRLNELATNMFKKTADYL 48 (137)
Q Consensus 21 ~~~~~~~~~~~~l~~la~~mf~kvs~Yl 48 (137)
|.--|+.....+++...+.|=.-...|.
T Consensus 24 s~~DPF~~Vk~EVq~sl~~l~~l~~~w~ 51 (130)
T 4dnd_A 24 SLEDPFFVVRGEVQKAVNTARGLYQRWC 51 (130)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444456667666666655555554
No 16
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=70.65 E-value=11 Score=23.21 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
.++|+-...+++++|..| +.+++++|.-...|+.
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~~ 39 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLKM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 478999999999999765 5678888887766654
No 17
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.71 E-value=24 Score=23.74 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=29.9
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
++.+++..........+.| .++..| ++...++-.++...|.....|-.--..||.+++.++.
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l---~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTL---LEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444 443332 3333333333555555555555555566666665543
No 18
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=68.52 E-value=6.2 Score=24.47 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhhh-hhhHhh-HHHHHHHHHHHHHHHHHHHHH
Q psy8908 78 QITVNISFSSARV-PAYKQL-IPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 78 ~~a~~l~~~~~~L-~ky~~l-~pyl~qID~Ie~~V~~LE~~a 117 (137)
+.+.-+..-++++ .|+..+ ...+.+||+.-.+|..||+.+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3444455555666 666653 355777888888888888754
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.29 E-value=40 Score=26.15 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=35.1
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLI-PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~-pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
+-.++......+...+..+ .||.... ....+|..+++.++.|-.....|=.|...||..=-.+|
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555555555555555 5555532 33445666666666666666666666666665544444
No 20
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=68.26 E-value=15 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=21.0
Q ss_pred hhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHH
Q psy8908 86 SSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 86 ~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~ 115 (137)
+..++ .+|+. ++.|-++|+++|..|..+..
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44556 66665 88888888888888766543
No 21
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=67.70 E-value=21 Score=28.30 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=42.8
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHhh----hh----------------hcchhHHHHHHHHHHHHHHHhhhHHHH
Q psy8908 24 EPMISHDPRLNELATNMFKKTADYLIG----EL----------------SSTQADYEVLEKMNNATITKYSDMKQI 79 (137)
Q Consensus 24 ~~~~~~~~~l~~la~~mf~kvs~Yl~~----El----------------~~t~~dy~LLE~mN~~~s~kY~~m~~~ 79 (137)
+-+.=+...+.++|+++|..|+.+||- ++ ..|..|=.|++++..+-...+..+.++
T Consensus 123 ~~L~l~~~~~~~iA~daF~~vG~~LQ~RR~~Dl~~~~~~hlt~~~~~~~DPA~~D~~L~~KL~eN~~~~~~kl~ev 198 (212)
T 4h9n_C 123 HSLGLPRQQLQLMAQDAFRDVGIRLQERRHLDLIYNFGCHLTDDYRPGVDPALSDPVLARRLRENRSLAMSRLDEV 198 (212)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSCGGGTTCCGGGCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788999999999999999872 33 457788999999988877666655544
No 22
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=67.33 E-value=29 Score=24.32 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 58 DYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 58 dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
+-+||.+ |--+...-..-++...++.+..+.| .+...+. ..+..+++.-...||.--++|+.|+.
T Consensus 3 Hi~LLRK-~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---------~~~~~k~~eq~~~le~lk~eL~~~~~ 68 (107)
T 2no2_A 3 HADLLRK-NAEVTKQVSMARQAQVDLEREKKELEDSLERIS---------DQGQRKTQEQLEVLESLKQELATSQR 68 (107)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 3333444444444444454444444 4444443 33333344444444444444444443
No 23
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=67.07 E-value=66 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|..++.+|..|..++..+......|+..+..++
T Consensus 157 ~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 157 VNSNIPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4446788888888888888888888887777654
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.71 E-value=39 Score=28.51 Aligned_cols=10 Identities=50% Similarity=0.424 Sum_probs=3.9
Q ss_pred HHHHHHHhhh
Q psy8908 126 RLEAKFKQLE 135 (137)
Q Consensus 126 ~LE~K~k~le 135 (137)
.+..++|.++
T Consensus 569 ~~~~~~~~l~ 578 (597)
T 3oja_B 569 LKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 25
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=64.42 E-value=68 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 109 SVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 109 ~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
+|..|+.....++.=...|+.++..+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 26
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=61.27 E-value=20 Score=24.54 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHhhhhhh-hhhHh
Q psy8908 73 YSDMKQITVNISFSSARV-PAYKQ 95 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L-~ky~~ 95 (137)
..++......|...++.| .++..
T Consensus 14 v~~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555 44443
No 27
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.61 E-value=45 Score=23.80 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=36.7
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLI-PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~-pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
+..+++.....+...++.+ .||...+ ....+|..+++.++.|=+.-..|=.|...||.+=-.+|+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3445555555566666666 5555533 334556666666666666666666666666655554443
No 28
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=59.04 E-value=11 Score=22.54 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=24.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.++|+-...+++++|..| +.+++++|.-..+|+
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~ 38 (39)
T 3te3_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLK 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 478999999999999764 567888887665554
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.72 E-value=1.1e+02 Score=29.16 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQ-----AAYKLDHYAKRLEAKF 131 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~-----~a~~LD~Ysk~LE~K~ 131 (137)
+....-+|+|+++..+.+.++ .-..+|+=...|+..+
T Consensus 1031 e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1080)
T 2dfs_A 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555543 4444455555555443
No 30
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=58.15 E-value=32 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+++|+....+++++|..| +.+++++|.-...|+.
T Consensus 5 ~EEF~~L~rRVlqLE~sl---~gI~SqIDaV~~KL~~ 38 (64)
T 3hrn_A 5 YEEFQVLVRRVDRMEHSI---GSIVSKIDAVIVKLEI 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 477888999999999764 5678888886666653
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.67 E-value=96 Score=26.68 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh-HHHHHHHHHHHHHH------
Q psy8908 39 NMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL-IPQLEQIDQIYDSV------ 110 (137)
Q Consensus 39 ~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l-~pyl~qID~Ie~~V------ 110 (137)
.+..+...=+...++--...+.-+.+-+..+..-+..|.+...+.-+..++. ..|.++ .+.-++|..|...|
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ 135 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQR 135 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444555555555566666666666666666666666666666666666 555552 23333444444433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q psy8908 111 -LKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 111 -~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
..|...+..+=.=-++||.++
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333334555544
No 32
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=54.66 E-value=31 Score=27.71 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..|+.+|+.+.++.++........+.+|.+++.|+
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777765
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.71 E-value=29 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
.|+++|.+++-.|.++..|+.=.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v 37 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEAL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 34
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=53.20 E-value=50 Score=22.35 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~ 115 (137)
.++.--.++.++++.-+.-+.+| +....|..--.-|.+|-.++++||+
T Consensus 27 tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~leA 76 (77)
T 2bez_C 27 TTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Confidence 45555667778888888888888 7888888888889999998888885
No 35
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=52.59 E-value=41 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
.+++.+.+|--||..|..|..++.-|..|..++.+-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~ 57 (125)
T 4g2k_A 22 KIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888899999999999999999999888653
No 36
>1yo7_A Regulatory protein ROP; protein design, RE-engineering of topology, four-helix bundle, replication regulator; 2.80A {Escherichia coli}
Probab=51.99 E-value=39 Score=24.49 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 42 KKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 42 ~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
-+++.||+++. +=|||++|..- -.+..+.-..+....+ +.|..+..-+....+||.+..--|..-.--|
T Consensus 9 LNMAkFI~aQs------LlLLEKLneLD---lD~~A~~CE~LHe~AE--~L~~~l~~r~~~~~~~d~qa~~ce~lhd~ae 77 (120)
T 1yo7_A 9 LNMARFIRSQT------LTLLEKLNELD---ADEQADICESLHDHAD--ELYRSCLASFKKNGQIDEQADICESLHDHAD 77 (120)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHTT---CHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHhhhcC---chHHHHHHHHHHHHHH--HHHHHHHHHhccccCccHHHHHHHHHHHHHH
Confidence 57899999875 57899999753 1222222222222222 4444555555545556666555554444444
Q ss_pred HHHHHHHHH
Q psy8908 122 HYAKRLEAK 130 (137)
Q Consensus 122 ~Ysk~LE~K 130 (137)
+.-..+-+|
T Consensus 78 ~l~~s~~ar 86 (120)
T 1yo7_A 78 ELYRSCLAR 86 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 37
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=51.71 E-value=54 Score=25.91 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=40.8
Q ss_pred HHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 45 ADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL----IPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 45 s~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l----~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
.+||.|=...+.+=..+ -+|..+.+.|. .+..+..++++| .-+..| ....+++|.+...|.+.|.++|.
T Consensus 153 edYLlGL~DLtGEL~R~--ain~v~~Gd~~----~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Yd 226 (249)
T 3axj_A 153 EDYLLGILQLASELSRF--ATNSVTMGDYE----RPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 226 (249)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHTTCCS----HHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH--HHHHHhcCChH----HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444433332222 23555655553 333444444444 333332 36789999999999999999995
Q ss_pred H
Q psy8908 120 L 120 (137)
Q Consensus 120 L 120 (137)
|
T Consensus 227 l 227 (249)
T 3axj_A 227 V 227 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 38
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=50.66 E-value=20 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8908 107 YDSVLKLEQAAYKLD-HYAKRLEAKFK 132 (137)
Q Consensus 107 e~~V~~LE~~a~~LD-~Ysk~LE~K~k 132 (137)
=..+++||.++++|+ .|-.+||..-+
T Consensus 22 v~nL~ELE~is~rlg~~Y~~~LeeaK~ 48 (53)
T 1x9b_A 22 VRNLNELEALAVRLGKSYRIQLDQAKE 48 (53)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 356788999999998 68999997654
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.02 E-value=1.3e+02 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD 121 (137)
.+|+.+..+|..||..+..+.
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 40
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.86 E-value=31 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 111 LKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 111 ~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+|+.++...-.-.+.+..+++.|+
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556566666666666666665
No 41
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=47.47 E-value=38 Score=20.69 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy8908 107 YDSVLKLEQAAY 118 (137)
Q Consensus 107 e~~V~~LE~~a~ 118 (137)
|+.|..||..+.
T Consensus 4 Eekv~~Le~~ld 15 (46)
T 3swy_A 4 EEKVEQLGSSLD 15 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 42
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=47.43 E-value=39 Score=26.56 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=41.8
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh----HHHHHHHHHHHHHHHHHHHHHH
Q psy8908 44 TADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL----IPQLEQIDQIYDSVLKLEQAAY 118 (137)
Q Consensus 44 vs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l----~pyl~qID~Ie~~V~~LE~~a~ 118 (137)
..+||.|=.+.+.+=..+ -+|..+.+.|.. +..+..++++| .-+..| ....+++|.+-..|.+.|.++|
T Consensus 149 ~edYLlGL~DltGEL~R~--avn~v~~Gd~~~----~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Y 222 (240)
T 1j1j_A 149 VEDYLSGVLILASELSRL--SVNSVTAGDYSR----PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVY 222 (240)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHTTCSSH----HHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhcCChHh----HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 344555444443332222 246666666643 33444444444 333322 4677999999999999999999
Q ss_pred HH
Q psy8908 119 KL 120 (137)
Q Consensus 119 ~L 120 (137)
.|
T Consensus 223 dl 224 (240)
T 1j1j_A 223 DL 224 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 43
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=46.18 E-value=17 Score=24.02 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L 113 (137)
.|..+..+||.||.++-.|
T Consensus 4 ~L~~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998766
No 44
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=46.17 E-value=8.8 Score=21.69 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 111 LKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 111 ~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
..||+-+..|++-+..-|.|+..||+
T Consensus 3 aaleqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555666666554
No 45
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=45.91 E-value=39 Score=19.08 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
+-++|+.|..-|+--|+|++-+.+||..
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4578888888888888888888888753
No 46
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=45.81 E-value=52 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy8908 42 KKTADYLIGELSSTQADYEVLEKMNNA 68 (137)
Q Consensus 42 ~kvs~Yl~~El~~t~~dy~LLE~mN~~ 68 (137)
-+++.||+++. +=|||++|..
T Consensus 9 lNMAkFI~~Qs------LlLLEKLneL 29 (65)
T 1nkd_A 9 LNMARFIRSQT------LTLLEKLNEL 29 (65)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHH------HHHHHHHHHH
Confidence 57899999875 5789999976
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.69 E-value=26 Score=21.36 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~ 122 (137)
.|++++++|..||..+..|..
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777766543
No 48
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=45.60 E-value=17 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..|..+..+||.||.++-.|
T Consensus 12 ~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998766
No 49
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=45.30 E-value=48 Score=24.28 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy8908 105 QIYDSVLKLEQA 116 (137)
Q Consensus 105 ~Ie~~V~~LE~~ 116 (137)
+|++++..|-.+
T Consensus 126 ~ie~RL~~l~~L 137 (175)
T 4abx_A 126 RVEARLSALSKL 137 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 50
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.30 E-value=39 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
..++.....++.+..+|.+|+.++..++.++
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3466666677777777888888887777664
No 51
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=45.10 E-value=14 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..|..+.++||.||.++-.|
T Consensus 8 ~~L~~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 8 TGLADIREAIDRIDLDIVQA 27 (101)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45888999999999998765
No 52
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=44.86 E-value=19 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
-|=+++++|+.++..||+.+..|
T Consensus 56 ~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 56 RYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578888889999999888765
No 53
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=44.06 E-value=81 Score=22.17 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhh-----------------cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-
Q psy8908 29 HDPRLNELATNMFKKTADYLIGELS-----------------STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV- 90 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~El~-----------------~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L- 90 (137)
++|+.-.-+..=|..+.+=|++|+. +...-.+|+.++|.....=-.-|..|..+|..+....
T Consensus 8 Td~~~M~~~Ag~vd~~n~~Vq~El~rl~~~v~~iaga~W~G~Aq~sf~~lM~rwn~a~r~l~~aL~sI~dnir~nA~~ye 87 (99)
T 3ogi_B 8 TDPHAMRDMAGRFEVHAQTVEDEARRMWASAQNISGAGWSGMAEATSLDTMAQMNQAFRNIVNMLHGVRDGLVRDANNYE 87 (99)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5777778888888999999999986 3345689999999999988888999999998888776
Q ss_pred hhhH
Q psy8908 91 PAYK 94 (137)
Q Consensus 91 ~ky~ 94 (137)
+.-.
T Consensus 88 ~~E~ 91 (99)
T 3ogi_B 88 QQEQ 91 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 54
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=43.81 E-value=7.7 Score=30.92 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 76 MKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 76 m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..+...........+ +++++++..-++|+++..++.+.+..+-..=.|..+|..++.+|+
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~ 203 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhce
Confidence 334444444455555 555556666666666666666666555444567777777776654
No 55
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=43.48 E-value=20 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~L 113 (137)
..|..+.++||.||.++-.|
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~L 36 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISL 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999998766
No 56
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.23 E-value=69 Score=21.09 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8908 76 MKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 76 m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~Ysk~LE~K~ 131 (137)
++..-.++...+.++ +.|.. +..|-..|..+|..+..+ .+++.++..|-.-|-.|.
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~ 64 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM 64 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677888888 77765 888888888888888877 456667777776665554
No 57
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.13 E-value=76 Score=21.59 Aligned_cols=40 Identities=8% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhh
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKL-----------DHYAKRLEAKFKQLEK 136 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~L-----------D~Ysk~LE~K~k~le~ 136 (137)
+.+..-+.+|++.|..|+++|... -.|+..|+.+++.|+.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666542 2577788888777753
No 58
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=42.77 E-value=19 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L 113 (137)
.|..+.++||.||.++-.|
T Consensus 6 ~L~~lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 6 PLLALREKISALDEKLLAL 24 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998766
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.77 E-value=1.3e+02 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 109 SVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 109 ~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
++..|+.++..+=.=-++||.
T Consensus 132 nIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333344443
No 60
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=42.58 E-value=56 Score=22.13 Aligned_cols=31 Identities=13% Similarity=0.339 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q psy8908 40 MFKKTADYLIGELSSTQADYEVLEKMNNATIT 71 (137)
Q Consensus 40 mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~ 71 (137)
.|..| +-|+.++..-...++-|..++...-.
T Consensus 10 F~~~v-~~I~~~i~~i~~~v~~l~~~~~~~L~ 40 (127)
T 1ez3_A 10 FFEQV-EEIRGFIDKIAENVEEVKRKHSAILA 40 (127)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 34677777777777777777776543
No 61
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=42.31 E-value=73 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHH
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARVPAYKQLIPQLEQI 103 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qI 103 (137)
+.++|..++.-=.++-|.+.+|= ..|..+-..-+..
T Consensus 12 vkKL~~~A~q~kmdLHDLaEdLP------~~w~~i~~vA~~t 47 (71)
T 2js5_A 12 LKKLNAQATALKMDLHDLAEDLP------TGWNRIMEVAEKT 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT------TSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhccch------hhHHHHHHHHHHH
Confidence 45666666655555555554443 4555444443333
No 62
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.28 E-value=62 Score=20.32 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHhh-hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHH
Q psy8908 66 NNATITKYS-DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 66 N~~~s~kY~-~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~ 115 (137)
|++++.+|- +-++-...+...+++| ....+|. .+|..++..+..|-+
T Consensus 10 Nr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~---~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 10 NKTAATRYRQKKRAEQEALTGECKELEKKNEALK---ERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 777777775 3445555566666666 5555443 334444444444433
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.16 E-value=68 Score=20.74 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 72 KYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|..+...+-.+. ...+.|-.-|..-.+.|..+..++..|+.-+..|-.-...|+.++..++
T Consensus 20 ~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 20 SFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444322 1223677778888888999999999999999999888899999888775
No 64
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.09 E-value=29 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 110 VLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 110 V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
...+++++..|..|.++|++.++.
T Consensus 74 ~~~veeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 74 SKTVDEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777778888888777654
No 65
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.01 E-value=49 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
-+++..|++++..|+.+...|+......+.
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555444443
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.80 E-value=88 Score=21.94 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~Ysk~LE~K~ 131 (137)
..++..-.++...+.++ +.|.. +..+-.+|..+|..+..+ .+++..+..|-.-|-.|+
T Consensus 53 ~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 53 DNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677777788 77764 777888888888888777 567778888876666664
No 67
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=41.52 E-value=19 Score=25.33 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHhhhhhh-hhhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV-PAYK-QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 81 ~~l~~~~~~L-~ky~-~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
.++......| +... .++|++..-...+.-...++.-|..+|.++..||.
T Consensus 56 ~~~~~~y~~l~~~W~~~l~p~l~~~~~~~~~~~~v~~FV~~ID~lV~~LE~ 106 (125)
T 3ezh_A 56 DGQLAQLQGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDR 106 (125)
T ss_dssp HTCHHHHHHHHHHHHHTHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566 6665 67777654333333345556666667777666663
No 68
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=41.37 E-value=21 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKL 113 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L 113 (137)
.|..+.++||.||.++-.|
T Consensus 13 ~L~~lR~~ID~iD~~Ll~L 31 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILAL 31 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998766
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.37 E-value=53 Score=19.23 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 104 DQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 104 D~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
.|+|++|.+|..-.+.|..=+-+|..-+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4556666666666655555555555443
No 70
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=41.30 E-value=53 Score=23.15 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 81 ~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a 117 (137)
.++...+..| +....+...-.+|+++..++..|.++.
T Consensus 2 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 2 STLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 666666666666777776666666654
No 71
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=41.12 E-value=71 Score=21.79 Aligned_cols=24 Identities=0% Similarity=0.094 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLD 121 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD 121 (137)
+--+.|-+|+..+.+.+.++.++|
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMe 69 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEME 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 72
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=41.05 E-value=54 Score=26.73 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHH--HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHH
Q psy8908 55 TQADYEVLEKMNNATIT--KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIY 107 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~--kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie 107 (137)
-..=..||+.+|+.... -..++.+.|..++..++++ +...++..|++++.+-.
T Consensus 211 P~AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~ 266 (319)
T 2p90_A 211 PAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQY 266 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 34556788888887653 3567777777777777777 77777777766654433
No 73
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.87 E-value=79 Score=21.13 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
+..+-.+|..+..++..|+..+..|+.-...|+.+++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777777777776665
No 74
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.68 E-value=14 Score=22.92 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~L 120 (137)
..|+++|.+|..||..+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888776554
No 75
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.55 E-value=60 Score=19.94 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 106 IYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 106 Ie~~V~~LE~~a~~LD~Ys 124 (137)
-|.+|.+||..|..|..-.
T Consensus 10 AERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777777776665443
No 76
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=40.49 E-value=82 Score=21.22 Aligned_cols=42 Identities=10% Similarity=-0.050 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 77 KQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 77 ~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
.....+|...+..+ .... .+--+.|-+|+..+.+.+.++.++
T Consensus 11 ~~~~~~i~~~l~~~~~~~g--e~Rk~~i~~ie~~ldEA~ell~qM 53 (97)
T 3onj_A 11 KTTLEQAKASLAEAPSQPL--SQRNTTLKHVEQQQDELFDLLDQM 53 (97)
T ss_dssp HHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 2222 133333444444444444444333
No 77
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=39.82 E-value=64 Score=21.98 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 78 QITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYK 119 (137)
Q Consensus 78 ~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 119 (137)
....+|...+..+ .... .+--+.|-+|+..+.+-+.++.+
T Consensus 16 ~l~~~i~~kl~~i~~~~g--eerk~~i~~ie~~l~EA~ell~q 56 (102)
T 1vcs_A 16 VLTAEITSKIARVPRLPP--DEKKQMVANVEKQLEEARELLEQ 56 (102)
T ss_dssp HHHHHHHHHHHHGGGSCT--TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 2211 23333344444444444444443
No 78
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=39.77 E-value=64 Score=19.71 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 73 YSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
-.+++.-+..+...++.+ ... -++++.|+..+..++.++..+..+
T Consensus 68 shel~~~l~~i~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 113 (115)
T 3zrx_A 68 SHDLRTPLTRIRLATEMMSEQD------GYLAESINKDIEECNAIIEQFIDY 113 (115)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGG------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666 432 245677888888888888777654
No 79
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=39.36 E-value=38 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=25.7
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQ 78 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~ 78 (137)
+-++++....+|.|+.|+|-.+..-|+++-+
T Consensus 46 ~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~ 76 (85)
T 2ca5_A 46 LLAEYQSKLSEYTLYRNAQSNTVKVIKDVDA 76 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999999887776644
No 80
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=39.12 E-value=91 Score=26.00 Aligned_cols=71 Identities=10% Similarity=0.237 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHH--HHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHH-------------HH---HHHH
Q psy8908 57 ADYEVLEKMNNATI--TKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVL-------------KL---EQAA 117 (137)
Q Consensus 57 ~dy~LLE~mN~~~s--~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~-------------~L---E~~a 117 (137)
.=..||+.+++... .-..++.+.|..+...++++ +...++..|++++.+-.+... .+ |+++
T Consensus 253 AA~alL~~L~~llgl~ip~~~L~e~Ae~ie~~i~el~~~~~e~~~~V~~LE~qyD~~~~~~~~~~l~~~~~~~ps~dei~ 332 (351)
T 2wam_A 253 AAQALLEQVAKTGSLQLPLAVLAEAAAEVQAKIDEQVQASAEVAQVVAALERQYDAFIDAQENRSLLTRDEDLPSGDELG 332 (351)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTC-------------C
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhchhhhhcccccccccccCCCCHHHHH
Confidence 44577788777765 34578888888899999999 888888888877755433321 12 5666
Q ss_pred HHHHHHHHHH
Q psy8908 118 YKLDHYAKRL 127 (137)
Q Consensus 118 ~~LD~Ysk~L 127 (137)
.++++|..+.
T Consensus 333 ~efErfL~~~ 342 (351)
T 2wam_A 333 AEFERFLAQQ 342 (351)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6777776654
No 81
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.52 E-value=50 Score=20.62 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 111 LKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 111 ~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.+||.+|.+|+.--..||..+..+|
T Consensus 20 aklenivarlendnanlekdianle 44 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHH
Confidence 3455555555544444444444443
No 82
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.89 E-value=1.2e+02 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy8908 37 ATNMFKKTADYLIGELSSTQADYEVLE 63 (137)
Q Consensus 37 a~~mf~kvs~Yl~~El~~t~~dy~LLE 63 (137)
+.+-|.-|+- +.++|+.+-+=...-+
T Consensus 16 ad~KyeEvaR-~E~dLEraEERae~aE 41 (155)
T 2efr_A 16 NYHLENEVAR-LKKLLERAEERAELSE 41 (155)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444555555 6666666655444443
No 83
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=37.75 E-value=70 Score=19.62 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
.+++.-...+...++.+ ..... .++.|..++..|..++..|=.|
T Consensus 69 hel~tpl~~i~~~~e~l~~~~~~------~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 69 HDLRTPLTRIRLATEMMSEQDGY------LAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555666555555 43221 2477888888888888776544
No 84
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.72 E-value=1.1e+02 Score=22.05 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh--h---hhHhhHHHHHH
Q psy8908 30 DPRLNELATNMFKKTADYLIG--ELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV--P---AYKQLIPQLEQ 102 (137)
Q Consensus 30 ~~~l~~la~~mf~kvs~Yl~~--El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L--~---ky~~l~pyl~q 102 (137)
.++|..+|..+=.++.+.-.. ==..+....-+|-.+| .+..|.++++....+...++.+ . .-.++...--+
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALN--iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLN--IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888887733 4555667777888877 4567777777777666666654 2 22235555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
++...+++.+|..=...|..-.++||++.+.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777777888877665
No 85
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=37.58 E-value=1.1e+02 Score=21.69 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=26.0
Q ss_pred hhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 86 SSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 86 ~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
++.+| ..|---|..=.-|--++.||..=.+.+..++..+...+..+
T Consensus 60 NmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L 106 (108)
T 1ykh_A 60 NIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 106 (108)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 44444444445566667777766666666666666665544
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.52 E-value=1.1e+02 Score=21.61 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8908 74 SDMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 74 ~~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~Ysk~LE~K~ 131 (137)
..++..-.++...+.++ +.|.. +..|-..|..+|..+..+ .+++..|..|-.-|-.|+
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKT 115 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456777778888 77765 778888888888888776 456777788876666654
No 87
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=37.42 E-value=69 Score=19.47 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHhhhhhh-hhhHhhHHHHH
Q psy8908 73 YSDMKQITVNISFSSARV-PAYKQLIPQLE 101 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L-~ky~~l~pyl~ 101 (137)
...|......+...+..| .-|.+.+..++
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555 55555444443
No 88
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=36.27 E-value=81 Score=19.94 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQA 116 (137)
Q Consensus 81 ~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~~ 116 (137)
.++...++.+ ....++...-.+||.|+..|.....-
T Consensus 16 ~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~r 53 (64)
T 3b5n_D 16 QQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDIN 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555 66788999999999999998876653
No 89
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.75 E-value=68 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
.-.+|...+..+|.-+..||+=..-.|
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444
No 90
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.29 E-value=97 Score=20.51 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy8908 77 KQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQ-AAYKLDHYAKRLEAKF 131 (137)
Q Consensus 77 ~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~-~a~~LD~Ysk~LE~K~ 131 (137)
+.--.++...+.++ ..|.. +..+-.+|..+|.++..+-. ++.++..|-.-|-.|.
T Consensus 9 ~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~ 66 (86)
T 1x8y_A 9 QCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL 66 (86)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567777777 66654 77777778777777776643 4455666665555443
No 91
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=35.20 E-value=1.5e+02 Score=22.64 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHHHHHHHh--hhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHH-
Q psy8908 29 HDPRLNELATNMFKKTADYLI--GELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQID- 104 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~--~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID- 104 (137)
...+|.++.++-=+.+..|+. ..+.....+..-|...++..-..-..+...-..+...+..+ +.+.++....+..|
T Consensus 39 S~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~ 118 (192)
T 2p22_C 39 SSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHS 118 (192)
T ss_dssp TTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888766555777775 33444444444444444444444455555555555556666 66665555544553
Q ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8908 105 QI------YDSVLKLEQAAYKLDHYAKRLEAKFKQ 133 (137)
Q Consensus 105 ~I------e~~V~~LE~~a~~LD~Ysk~LE~K~k~ 133 (137)
.| +.=...|..+|.+.|+=|..|+.+|..
T Consensus 119 ~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~ 153 (192)
T 2p22_C 119 EFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRS 153 (192)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44 233578999999999999999988743
No 92
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=34.79 E-value=41 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 97 IPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 97 ~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
..|+++|++|...+.++...+.+|
T Consensus 43 ~ef~~~ve~i~~~i~~i~~~v~el 66 (279)
T 3c98_B 43 DEFFEQVEEIRGFIDKIAENVEEV 66 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333
No 93
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=34.32 E-value=32 Score=22.21 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=14.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 128 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE 128 (137)
..|.+...--..=..||.++.-+|.==.+|+.+...+|
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E 53 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLE 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333333333333333333333333333333
No 94
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=33.88 E-value=44 Score=27.63 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHH----hhhHHHHHHHHHhhhhhh-hh-hHhhHHHHHHHHHHHH
Q psy8908 56 QADYEVLEKMNNATITK----YSDMKQITVNISFSSARV-PA-YKQLIPQLEQIDQIYD 108 (137)
Q Consensus 56 ~~dy~LLE~mN~~~s~k----Y~~m~~~a~~l~~~~~~L-~k-y~~l~pyl~qID~Ie~ 108 (137)
..=..||+.++...... ..++.+.|..+...+.++ +. ..++..|++++.+--+
T Consensus 215 ~AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD 273 (325)
T 3e35_A 215 DAALTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYD 273 (325)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 34578999999987766 449999999999999999 88 8899998887765433
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.82 E-value=1e+02 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=26.7
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
+....|+....+|-+-|..|..||.-..+.|.-.+.|=+.+-
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666777777777777766666655443
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.69 E-value=2.2e+02 Score=24.19 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy8908 58 DYEVLEKMNN 67 (137)
Q Consensus 58 dy~LLE~mN~ 67 (137)
++..||++=+
T Consensus 39 ~l~~LE~~l~ 48 (409)
T 1m1j_C 39 ELLEIEGLLQ 48 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 97
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.62 E-value=42 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~L 120 (137)
..|+.++.+|..||..+..|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888777665
No 98
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.44 E-value=50 Score=22.12 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHHHHH
Q psy8908 75 DMKQITVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE~~a 117 (137)
++.+.+..|..+++.| -|++- |..|-.-=-.|-..|+.||.-+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666 55555 3333333334444555554433
No 99
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.41 E-value=99 Score=20.06 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy8908 120 LDHYAKRLEA 129 (137)
Q Consensus 120 LD~Ysk~LE~ 129 (137)
|......||.
T Consensus 64 l~~a~~kLee 73 (81)
T 1ic2_A 64 LKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 100
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=33.04 E-value=37 Score=23.63 Aligned_cols=50 Identities=8% Similarity=0.186 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHHHHH-----HHhhhhhcchhHHHHHHHHHHHHHHHhhhHHH
Q psy8908 29 HDPRLNELATNMFKKTAD-----YLIGELSSTQADYEVLEKMNNATITKYSDMKQ 78 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~-----Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~ 78 (137)
-...+..=.+.+++.... -+-+++++...+|++..|++-++..-|+|+.+
T Consensus 28 ~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~KD~~q 82 (92)
T 2g0u_A 28 GVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMKDIDS 82 (92)
T ss_dssp TTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432 24488999999999999999999888777643
No 101
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=32.76 E-value=1.4e+02 Score=22.46 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=38.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8908 68 ATITKYSDMKQITVNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~~a 117 (137)
.++.--.++.++++.-+.-+.+| +....|..--.-|.+|-.++++||+-|
T Consensus 40 tts~AL~kiQ~VVN~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAda 91 (149)
T 1wyy_A 40 TTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV 91 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777778887 777778888888888888888888766
No 102
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.98 E-value=1.3e+02 Score=21.08 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 55 TQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIP----QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 55 t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~p----yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
.....+=|+.-|........++..-..+-...+.+. .+...|.. .=.+|.++..++...|.....|-.=-+.||.
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555444444433333333 33333211 1244555566666666666666555555555
Q ss_pred HHHhhh
Q psy8908 130 KFKQLE 135 (137)
Q Consensus 130 K~k~le 135 (137)
.+..++
T Consensus 112 e~~~Lk 117 (129)
T 2fxo_A 112 ECSELK 117 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 103
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=31.89 E-value=81 Score=25.67 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhh
Q psy8908 37 ATNMFKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQL 96 (137)
Q Consensus 37 a~~mf~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l 96 (137)
|..+...++..++=+ .|..=|+.-=........++..-...+...+..| ++|..+
T Consensus 214 A~~lL~~l~~l~gl~-----id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~~ 269 (319)
T 2p90_A 214 TLKLLQSIADSADLN-----LPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSE 269 (319)
T ss_dssp HHHHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Confidence 444444444444322 2344455555556666666666666666666666 666553
No 104
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=31.80 E-value=84 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy8908 117 AYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 117 a~~LD~Ysk~LE~K~k~l 134 (137)
+.+++.|+..||.+.+.+
T Consensus 23 ~~~lE~~~~~Lee~t~~L 40 (66)
T 3hls_A 23 TQELEMLTDRLQLTLRAL 40 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 105
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=31.40 E-value=1.4e+02 Score=23.57 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=47.3
Q ss_pred HhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q psy8908 72 KYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA-----KRLEAKF 131 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys-----k~LE~K~ 131 (137)
.|.++...|..|.+-+..+ .--..=.-+|+-|-+|-..|.+|=++|+.+..+. +.||.+-
T Consensus 92 ~fqel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~K 157 (213)
T 3ajm_A 92 EFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQK 157 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 4567777788888887777 6666667889999999999999999999998763 5566543
No 106
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=30.91 E-value=91 Score=20.07 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKR 126 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~ 126 (137)
-.-+++..|++++.+|..+...|+.+...
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888887777777765543
No 107
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.83 E-value=1.2e+02 Score=20.23 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHH-HHHHHHHHHHHH
Q psy8908 71 TKYSDMKQITVNISFSSARV-PAYKQLIPQLE-QIDQIYDSVLKL 113 (137)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~-qID~Ie~~V~~L 113 (137)
.|...|......+...+..| .-|.+.+..|+ .|-.+|.+|..+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666667777777777 77777665553 366777766653
No 108
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=30.81 E-value=1.2e+02 Score=20.17 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a 117 (137)
.+|+.+|.++.-||+-+
T Consensus 52 ~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 52 EKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 109
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.69 E-value=17 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~L 120 (137)
..|+.+++.|..||..+..|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888776655
No 110
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.91 E-value=1.5e+02 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
-.-+++.+|++++..|+.....|+.....++.-
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888887777666543
No 111
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.75 E-value=1.3e+02 Score=20.16 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 95 QLIPQLEQIDQIYDSVLKL----EQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~L----E~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.+-...+||+++...|..| |...++|+.-.++--..+..|++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777655 55566666655555555555544
No 112
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.57 E-value=95 Score=18.69 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 103 ID~Ie~~V~~LE~~a~~LD~Ysk~LE~ 129 (137)
+.++|.++..||....+|++-.+-|+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655554
No 113
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=29.54 E-value=41 Score=23.26 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=30.9
Q ss_pred CccccccCCcccCCC---CCchHHHHHHHHHHHHHHHHHhh
Q psy8908 13 MTSLSTSTSSFEPMI---SHDPRLNELATNMFKKTADYLIG 50 (137)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~l~~la~~mf~kvs~Yl~~ 50 (137)
|-+.-..|+.||... |+.+.+.+.+..||..|-.||-+
T Consensus 79 ~gs~vkwt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll~ 119 (122)
T 1vjh_A 79 DGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILN 119 (122)
T ss_dssp SCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888999754 35688999999999999999865
No 114
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=29.28 E-value=1.1e+02 Score=19.48 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHHHhhhhhh-hhhHhhHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy8908 70 ITKYSDMKQITVNISFSSARV-PAYKQLIPQ----LEQIDQIYDSVLKL----EQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~L-~ky~~l~py----l~qID~Ie~~V~~L----E~~a~~LD~Ysk~LE~K~k~le 135 (137)
..++..+..-+..-...+..+ .....|-.- -.....|..++..| +.+....+...++|+.-+..++
T Consensus 42 l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q 116 (119)
T 3uun_A 42 FHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 443333110 11233444444443 4455556667777776665554
No 115
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.14 E-value=63 Score=21.35 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~~LE~~a 117 (137)
+|...=.+|..+|.++..|++..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666554
No 116
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.93 E-value=1.4e+02 Score=21.14 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
.-.|++.+++++..|+.+...||.....+
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777765544
No 117
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.90 E-value=1.1e+02 Score=19.36 Aligned_cols=60 Identities=7% Similarity=0.013 Sum_probs=29.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 66 NNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 66 N~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
+......|....+....+...+..+ .....+..--=.+-+....+..+++++..++.+-.
T Consensus 10 e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~ 70 (73)
T 3htk_B 10 DDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREA 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 44444433322333444556666666666666543
No 118
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.51 E-value=2e+02 Score=22.10 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=54.3
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh-h-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 48 LIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSAR-V-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 125 (137)
Q Consensus 48 l~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~-L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk 125 (137)
|..+|..+-.-..=|..-|......+..++............ + ....++.......+.+-..|.+||+.-.-|+.=..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444555555566666766777777777766666555332 2 55555666667777777777777777777766665
Q ss_pred HHHHHHHhhh
Q psy8908 126 RLEAKFKQLE 135 (137)
Q Consensus 126 ~LE~K~k~le 135 (137)
...+.+..++
T Consensus 127 ~~~~SleD~e 136 (189)
T 2v71_A 127 ATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhHHHHH
Confidence 5555555444
No 119
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.47 E-value=1.4e+02 Score=20.08 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
.+++....-=+++-.-=.+|+.++.+|+.=...|+..+.
T Consensus 25 aEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 25 AELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443344444444555555555555555544443
No 120
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.70 E-value=1.8e+02 Score=21.34 Aligned_cols=13 Identities=15% Similarity=-0.013 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q psy8908 37 ATNMFKKTADYLI 49 (137)
Q Consensus 37 a~~mf~kvs~Yl~ 49 (137)
-.+.+..+++|.+
T Consensus 77 veeA~~~L~eYn~ 89 (152)
T 4fla_A 77 VDEACLLLAEYNG 89 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555543
No 121
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=27.65 E-value=1e+02 Score=24.14 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8908 116 AAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 116 ~a~~LD~Ysk~LE~K~k~l 134 (137)
++..+-.-.+.+-.+++.|
T Consensus 78 l~~~i~~~~~~i~~~Lk~l 96 (267)
T 1dn1_B 78 LMSDIKKTANKVRSKLKSI 96 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444443
No 122
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=27.44 E-value=1.6e+02 Score=20.68 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 76 MKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAY 118 (137)
Q Consensus 76 m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 118 (137)
+.....+|...+..= ..|+++...|+.|-.||..-+.||.+-.
T Consensus 12 ~ekKi~nIVtKIDkkKnIy~~inKLlnEIseIe~d~tSle~vk~ 55 (107)
T 3hgf_A 12 IEKKIENIVTKIDKKKYIYDNMKKLLNEIAEIEKDKTSLEEVKN 55 (107)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcccccHHHHHh
Confidence 333444455555555 5666666667777777766666665433
No 123
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=27.34 E-value=2.2e+02 Score=22.18 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=15.3
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHHH
Q psy8908 43 KTADYLIGELSSTQADYEVLEKMNNA 68 (137)
Q Consensus 43 kvs~Yl~~El~~t~~dy~LLE~mN~~ 68 (137)
.++.|+.++.+.-...++=..+.+..
T Consensus 77 ~~a~~~D~~~~~i~~~ln~~r~~~i~ 102 (214)
T 2cly_A 77 SVGEFADKLNEQKIAQLEEVKQASIK 102 (214)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888877766665555544433
No 124
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=27.13 E-value=1.4e+02 Score=24.62 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhh-hhhHh--hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy8908 79 ITVNISFSSARV-PAYKQ--LIPQLEQIDQIYDSVLKLEQA-AYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 79 ~a~~l~~~~~~L-~ky~~--l~pyl~qID~Ie~~V~~LE~~-a~~LD~Ysk~LE~K~k~l 134 (137)
.|..+-..++.+ ...-- +.+..++-.+|+.+|.++=+- =.++-+|++.||.++-.-
T Consensus 216 AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~~ 275 (325)
T 3e35_A 216 AALTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDAA 275 (325)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 344444455555 55555 777888888888888877665 557889999999887553
No 125
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.92 E-value=1.1e+02 Score=18.76 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
...+.|++++..|..|+.--..|-.-...|...+..|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777666666666666655544
No 126
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=26.69 E-value=39 Score=23.46 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy8908 95 QLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 95 ~l~pyl~qID~Ie~~V~ 111 (137)
.|..+.++||+||.++-
T Consensus 4 ~L~~lR~~ID~ID~~il 20 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKIL 20 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888999999999987
No 127
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=26.55 E-value=1.2e+02 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHhhhhhh-hhhHhhHHHH----HHHHHHHHHHHH
Q psy8908 80 TVNISFSSARV-PAYKQLIPQL----EQIDQIYDSVLK 112 (137)
Q Consensus 80 a~~l~~~~~~L-~ky~~l~pyl----~qID~Ie~~V~~ 112 (137)
...|...+.+| +.|..|.-.+ ..||.||..|..
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 45 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566666777 7777766655 468888877654
No 128
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.03 E-value=1.6e+02 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
..++..+...+..|++-=..||.+.+.+-..++.+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888888888888888887777764
No 129
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=25.61 E-value=1.6e+02 Score=19.93 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHH
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLE 114 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE 114 (137)
+.++|..++.-=.++.|.+.+|=..-+.| .--...-.-...+++...++..+|
T Consensus 24 vkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 24 VRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777666666666555544444444 333333333344444444444443
No 130
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=25.58 E-value=83 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYA 124 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ys 124 (137)
-.-++++.|++++..|+.....|+.+.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888777777653
No 131
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=25.23 E-value=1.5e+02 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDH 122 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~ 122 (137)
+++.++++|..||..+..+..
T Consensus 36 ~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 36 VLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655544
No 132
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.14 E-value=2.6e+02 Score=22.79 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHH
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLE 114 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE 114 (137)
+...|.-+-.++..|.....++.+.+.++ .+ ++..++.|--||..|..+-
T Consensus 207 ~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~---~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 207 VEEANTYTDQKMGEMNSKIKGVENKMKQIEDK---IEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666655555555544 32 2333445555555555443
No 133
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.14 E-value=1.8e+02 Score=24.04 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~L 120 (137)
+|+..+.+|..|++.+..|
T Consensus 34 ~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 34 MWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 134
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.09 E-value=68 Score=26.24 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV--PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 123 (137)
Q Consensus 81 ~~l~~~~~~L--~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Y 123 (137)
.+|.....++ ..+.++...-..+..+..+|..|++.|-.||..
T Consensus 42 ~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~ 86 (279)
T 3p8c_D 42 SSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3445555665 666667777777777777777777777766644
No 135
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.95 E-value=86 Score=19.25 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8908 111 LKLEQAAYKLDHYAKRLEA 129 (137)
Q Consensus 111 ~~LE~~a~~LD~Ysk~LE~ 129 (137)
+.|+....+|+.-+++||.
T Consensus 23 ~~l~~Lt~kL~~vt~rle~ 41 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEA 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666664
No 136
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=24.92 E-value=2.4e+02 Score=21.86 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 62 LEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 62 LE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
=++.+..-+.+|...-+.|.+....+++- .+|...+ +.++..+++|..+++-++.|
T Consensus 87 ~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ad---s~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 87 RQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNAD---SKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhcC
Confidence 34556666666666666666666655555 5555443 33445555555444444333
No 137
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=24.64 E-value=1.6e+02 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 75 DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
++.++..-+..+++.+ ++.+.|+...++=+++..+-..+...|.+|
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l 59 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566677777 777666665555555555555555555554
No 138
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.60 E-value=2.4e+02 Score=21.66 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy8908 94 KQLIPQLEQIDQIYDSVL 111 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~ 111 (137)
..+.+.+.+|+.++..+.
T Consensus 111 ~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 111 REIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 139
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=24.59 E-value=2e+02 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=36.8
Q ss_pred HHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy8908 82 NISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA---KRLEA 129 (137)
Q Consensus 82 ~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ys---k~LE~ 129 (137)
+|.+.-..+ ..-+.++.|+|-|..|-.+...+-..--.-|.|- +.||.
T Consensus 92 dihkhgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK 143 (294)
T 3caz_A 92 DIHKHGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEK 143 (294)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHh
Confidence 345555556 6667788899999999999999999888889985 44554
No 140
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.56 E-value=1.5e+02 Score=20.32 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 100 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 100 l~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
=.+|++....+..|..-.+++-.|...||.+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578888888888888889999998888876
No 141
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=24.53 E-value=47 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.6
Q ss_pred ccccccCCcccCCCCC---chHH---HHHHHHHHHHHHHHHhhh
Q psy8908 14 TSLSTSTSSFEPMISH---DPRL---NELATNMFKKTADYLIGE 51 (137)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~l---~~la~~mf~kvs~Yl~~E 51 (137)
-+.-+.++.|++..+. ...+ .+.+..||..+..||.+.
T Consensus 110 gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~ 153 (157)
T 1tw0_A 110 GSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLAN 153 (157)
T ss_dssp SEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677788899998653 3455 788999999999999753
No 142
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.43 E-value=1.4e+02 Score=19.69 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=14.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
.|-++++..=..|++.|..+.+.|..+..|
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555544433
No 143
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.10 E-value=1.7e+02 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 75 DMKQITVNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKL 120 (137)
Q Consensus 75 ~m~~~a~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 120 (137)
++.++..-+.++++.+ ++-+.|....++=+.+..+-..|...+.+|
T Consensus 38 eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl 84 (96)
T 1sfc_A 38 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566677777 776666655555555555555555555444
No 144
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.01 E-value=2.7e+02 Score=21.99 Aligned_cols=16 Identities=0% Similarity=-0.076 Sum_probs=6.2
Q ss_pred HhhhHHHHHHHHHhhh
Q psy8908 72 KYSDMKQITVNISFSS 87 (137)
Q Consensus 72 kY~~m~~~a~~l~~~~ 87 (137)
+|.++...+..+...+
T Consensus 64 ~~~~~~~k~~~~~~~L 79 (357)
T 3rrk_A 64 RWEAVVSQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444433333333333
No 145
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.71 E-value=1.4e+02 Score=18.70 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhh
Q psy8908 125 KRLEAKFKQLEK 136 (137)
Q Consensus 125 k~LE~K~k~le~ 136 (137)
..||.|+..+++
T Consensus 51 e~Le~kv~~l~~ 62 (65)
T 3m0d_C 51 LSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 447777776654
No 146
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=23.56 E-value=35 Score=23.97 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=17.7
Q ss_pred hhhHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQID----QIYDSVLKLEQAAYKLDHYAKRL 127 (137)
Q Consensus 91 ~ky~~l~pyl~qID----~Ie~~V~~LE~~a~~LD~Ysk~L 127 (137)
+....|+..+.++. -+|+.+..+|..+.-+-..-+.|
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L 74 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRL 74 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443 25556666666554444444444
No 147
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.52 E-value=1.2e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 98 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 98 pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
-.-+++.+|++++..|.+....|+.+...++..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888888877766643
No 148
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=23.39 E-value=2.1e+02 Score=23.35 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 101 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 130 (137)
Q Consensus 101 ~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K 130 (137)
.+|+.++.++.++|+-+.++=+---.||..
T Consensus 223 n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~ 252 (268)
T 2yo3_A 223 SKIKGVENKMKQIEDKIEEILSKIYHIENE 252 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333334433
No 149
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=23.28 E-value=2.2e+02 Score=21.98 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhHHHHHHH
Q psy8908 29 HDPRLNELATNMFKKTADYLIGELS--STQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLIPQLEQI 103 (137)
Q Consensus 29 ~~~~l~~la~~mf~kvs~Yl~~El~--~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~pyl~qI 103 (137)
-+|++...++.+|.-++..|.+... -|..|-.++...=.....+. ..--......| ..|++.++|+...
T Consensus 117 ~t~e~~~AW~~~~~~ia~~l~~~y~m~lt~~~~~~v~~sw~~v~~~~------~~~g~~~~~rlF~~~P~~~~~F~~f 188 (283)
T 1c7c_A 117 FTPAVHASLDKFLASVSTVLTSKYRGVLSPADKTNVKAAWGKVGAHA------GEYGAEALERMFLSFPTTKTYFPHF 188 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHHHGGGH------HHHHHHHHHHHHHHCGGGGGGCTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHChhHHHHHHhC
Confidence 4678889999999999998887644 45566666654433332222 11224567778 8899999888764
No 150
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A
Probab=23.22 E-value=51 Score=23.54 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.1
Q ss_pred ccccccCCcccCCCCC---chHH---HHHHHHHHHHHHHHHhh
Q psy8908 14 TSLSTSTSSFEPMISH---DPRL---NELATNMFKKTADYLIG 50 (137)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~l---~~la~~mf~kvs~Yl~~ 50 (137)
-+.-+.|+.|++.... ...+ .+.+..||..+..||.+
T Consensus 111 gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~ 153 (158)
T 2qim_A 111 GSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSA 153 (158)
T ss_dssp CEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788899998653 3455 78899999999999965
No 151
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.12 E-value=2.1e+02 Score=23.64 Aligned_cols=12 Identities=0% Similarity=0.393 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy8908 103 IDQIYDSVLKLE 114 (137)
Q Consensus 103 ID~Ie~~V~~LE 114 (137)
|++++.+|..|+
T Consensus 42 i~~l~~~i~~l~ 53 (323)
T 1lwu_C 42 VTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 152
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.11 E-value=94 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 109 SVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 109 ~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
+|..|+..+..|++=..+||.++.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 153
>3pmk_N Phosphoprotein; chaperone, viral protein; 3.03A {Recombinant vesicular stomatitis indiarvsv-g}
Probab=22.99 E-value=29 Score=22.91 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.9
Q ss_pred hhhHhhHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDS 109 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~ 109 (137)
.-|..|..-++.||+||.+
T Consensus 12 ktY~~LD~AvqeidelEs~ 30 (68)
T 3pmk_N 12 KSYSRLDQAVGEIDEIEAQ 30 (68)
T ss_dssp TTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999876
No 154
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.83 E-value=1.9e+02 Score=19.98 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8908 99 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 135 (137)
Q Consensus 99 yl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le 135 (137)
.|.+--++.++++.-.++...++...+.|+.+|..++
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888888888888887754
No 155
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.70 E-value=1.8e+02 Score=19.67 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHHHHhhhhhh-hhhHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy8908 80 TVNISFSSARV-PAYKQ-LIPQLEQIDQIYDSVLKLE-QAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 80 a~~l~~~~~~L-~ky~~-l~pyl~qID~Ie~~V~~LE-~~a~~LD~Ysk~LE~K~ 131 (137)
-.++...+.++ ..|.. +..|-..|..+|..+..+- +++..+..|-.-|-.|+
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 75 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKL 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666 55543 6666677777777776653 34555666655554443
No 156
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.62 E-value=2.1e+02 Score=20.25 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=31.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8908 93 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 136 (137)
Q Consensus 93 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k~le~ 136 (137)
.++..-+-..|+.++.++.+|+.....+-.-...++..+..+.+
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888888777777777777777766543
No 157
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=22.56 E-value=1.1e+02 Score=25.43 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=32.2
Q ss_pred HHHHhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 81 VNISFSSARV-PAYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 132 (137)
Q Consensus 81 ~~l~~~~~~L-~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~k 132 (137)
..+-..++.+ ...--+.+..++-.+|+.+|.++-+--.++-+|++.||.++-
T Consensus 255 ~alL~~L~~llgl~ip~~~L~e~Ae~ie~~i~el~~~~~e~~~~V~~LE~qyD 307 (351)
T 2wam_A 255 QALLEQVAKTGSLQLPLAVLAEAAAEVQAKIDEQVQASAEVAQVVAALERQYD 307 (351)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhc
Confidence 3333344444 555556666677777777777766655666777777776653
No 158
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=22.48 E-value=90 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.2
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8908 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (137)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (137)
|.|..-+.-++..+..++.+++|+++||+.+-.
T Consensus 12 pvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~ 44 (197)
T 1zxz_A 12 PVLHEKAREVDPGEIGSERIQKIIDDMIKVMRL 44 (197)
T ss_dssp GGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCceeCCcccCCCHHHHHHHHHHHHHHHh
Confidence 667776666665555679999999999998754
No 159
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.35 E-value=1.4e+02 Score=18.21 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8908 102 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 131 (137)
Q Consensus 102 qID~Ie~~V~~LE~~a~~LD~Ysk~LE~K~ 131 (137)
.|++++..|..|+.--..|-.=...|...+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 160
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=22.29 E-value=2.1e+02 Score=20.14 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy8908 96 LIPQLEQIDQIYDSVLKLEQAA 117 (137)
Q Consensus 96 l~pyl~qID~Ie~~V~~LE~~a 117 (137)
|.||-+-+..|+..+..|...+
T Consensus 50 L~pY~~a~~~~~~~l~~L~~l~ 71 (164)
T 3va9_A 50 RDSYIRARDALAARLDGLRAVL 71 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554444444444444433
No 161
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Probab=22.26 E-value=40 Score=24.18 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=25.1
Q ss_pred CccccccCCcccCCCCCch---HHH--HHHHHHHHHHHHHHhh
Q psy8908 13 MTSLSTSTSSFEPMISHDP---RLN--ELATNMFKKTADYLIG 50 (137)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~l~--~la~~mf~kvs~Yl~~ 50 (137)
|.+.=+.|+.|++.....+ .+. +.+..||..+-.||.+
T Consensus 110 ggs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~ 152 (155)
T 2flh_A 110 DKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSN 152 (155)
T ss_dssp TEEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEEEEEEECCCCccChhHhhhHHHHHHHHHHHHHHHhh
Confidence 3466677889998876554 455 7899999999999964
No 162
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=21.87 E-value=1.8e+02 Score=19.28 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhh
Q psy8908 42 KKTADYLIGELS 53 (137)
Q Consensus 42 ~kvs~Yl~~El~ 53 (137)
.+++.||...+.
T Consensus 29 ~~aA~~vd~~~~ 40 (104)
T 1t3u_A 29 ESAARYLDGKMR 40 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554444
No 163
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=21.87 E-value=2.6e+02 Score=21.68 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-hhhHhhH
Q psy8908 41 FKKTADYLIGELSSTQADYEVLEKMNNATITKYSDMKQITVNISFSSARV-PAYKQLI 97 (137)
Q Consensus 41 f~kvs~Yl~~El~~t~~dy~LLE~mN~~~s~kY~~m~~~a~~l~~~~~~L-~ky~~l~ 97 (137)
|.-.++-++.-+..+..--+.++.- ..+|..-...+.++.++++.+ ++-.+|+
T Consensus 91 s~EFSD~~qTaL~eAQ~AtD~y~~A----inny~~Ads~~~~lekKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 91 NLEFSDKINTLLSETEGLTRDYEKQ----INKLKNADSKIKDLENKINQIQTRLSELD 144 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333444344444444444443 334555555555555555555 5444443
No 164
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.85 E-value=1.7e+02 Score=19.04 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHhhhhhh
Q psy8908 73 YSDMKQITVNISFSSARV 90 (137)
Q Consensus 73 Y~~m~~~a~~l~~~~~~L 90 (137)
|..|...+..+......|
T Consensus 13 ~~~l~~~a~~~~~~~~~i 30 (103)
T 4i0x_B 13 LDHIEQVTSRARGFKEFV 30 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 165
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=21.68 E-value=1e+02 Score=16.23 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy8908 31 PRLNELATNMFKKTADYLIG 50 (137)
Q Consensus 31 ~~l~~la~~mf~kvs~Yl~~ 50 (137)
.+|.+-+..+.++|+.+|.+
T Consensus 4 ~el~~~~r~v~ekV~~vlaa 23 (26)
T 1xwj_B 4 KELIESARKVSEKVSHVLAA 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999988753
No 166
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=21.63 E-value=4.2e+02 Score=23.39 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHH-------HhhhHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q psy8908 60 EVLEKMNNATIT-------KYSDMKQITVNISFSSARVPAYKQLIPQLEQIDQIYDSVLK---------LEQAAYKLDHY 123 (137)
Q Consensus 60 ~LLE~mN~~~s~-------kY~~m~~~a~~l~~~~~~L~ky~~l~pyl~qID~Ie~~V~~---------LE~~a~~LD~Y 123 (137)
.=++++|++.+. -+.+..+....|..+...|.+..+ ..++||.+-+-|.+ ||++...|...
T Consensus 482 aKIDNLNQaaSefKnGKngDFSkVgQAlsdLKnSkvgLsrnQE---LtqKIdNLNQAVSEAKatgdFsnveQaiddLKnS 558 (569)
T 4dvz_A 482 SKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK---VTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNF 558 (569)
T ss_dssp HHHHHHHHHHHHHHTC---CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhcCCCccCcchhhhhhhHHHhhhhhhhhhHH---HHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHh
Confidence 457889988863 466777777777777666633333 34555555555543 45555555444
Q ss_pred H
Q psy8908 124 A 124 (137)
Q Consensus 124 s 124 (137)
+
T Consensus 559 t 559 (569)
T 4dvz_A 559 S 559 (569)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=21.62 E-value=1.8e+02 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhh
Q psy8908 94 KQLIPQLEQIDQIYDSVLKLE----------QAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 94 ~~l~pyl~qID~Ie~~V~~LE----------~~a~~LD~Ysk~LE~K~k~l 134 (137)
..+..||.-||+|.+-+.-|. .+-.-|..-.++||..|+.|
T Consensus 25 ~~l~~yL~av~~l~~a~~~~~~~~~~s~~l~~~~~Ll~~a~~~Le~eF~~l 75 (571)
T 2pft_A 25 GRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSL 75 (571)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888777665 46677888889999998876
No 168
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=21.44 E-value=59 Score=23.21 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=29.2
Q ss_pred ccccccCCcccCCCCC---chHH---HHHHHHHHHHHHHHHhhh
Q psy8908 14 TSLSTSTSSFEPMISH---DPRL---NELATNMFKKTADYLIGE 51 (137)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~l---~~la~~mf~kvs~Yl~~E 51 (137)
.+.-+.|+.|++..+. ...+ .+.+..||+.+..||.+.
T Consensus 111 gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~ 154 (159)
T 1e09_A 111 GSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGH 154 (159)
T ss_dssp SEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4667788899997543 3345 778999999999999754
No 169
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A
Probab=20.71 E-value=62 Score=23.46 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=26.0
Q ss_pred CccccccCCcccCCC---CCchHHH---HHHHHHHHHHHHHHhh
Q psy8908 13 MTSLSTSTSSFEPMI---SHDPRLN---ELATNMFKKTADYLIG 50 (137)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~l~---~la~~mf~kvs~Yl~~ 50 (137)
|.+.-..|+-||+.. |+.+.+. +-+..||..|-.||-+
T Consensus 110 ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLla 153 (154)
T 2wql_A 110 GGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIA 153 (154)
T ss_dssp SCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 445556788898774 3444443 3478899999999854
No 170
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.51 E-value=3.5e+02 Score=22.02 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8908 108 DSVLKLEQAAYKLDHYAKRLEAKFKQL 134 (137)
Q Consensus 108 ~~V~~LE~~a~~LD~Ysk~LE~K~k~l 134 (137)
++|.+||.-+.+|.+-.+.+++.++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555556655554
No 171
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.17 E-value=2e+02 Score=19.02 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=18.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH
Q psy8908 91 PAYKQLIPQLEQIDQIYDSVLKLEQ 115 (137)
Q Consensus 91 ~ky~~l~pyl~qID~Ie~~V~~LE~ 115 (137)
....++...-..||.|+..|.....
T Consensus 48 ~mg~Eld~Qn~~LD~i~~~~D~~~~ 72 (87)
T 1l4a_D 48 DMGNEIGSQNRQVDRIQQKAESNES 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888889998877766544
Done!