RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8908
         (137 letters)



>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
           1423]}
          Length = 440

 Score = 28.9 bits (64), Expect = 0.19
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 63  EKMNNATITKYSDMKQITVNISFSSARVPAYKQL----IPQLEQIDQIYDS 109
           E    + IT   DM QI         +VP +       I   + +D ++DS
Sbjct: 6   ETYGISHIT-RHDMLQIPEQQKNEKYQVPEFDSSTIKNISSAKGLD-VWDS 54


>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima
           [TaxId: 2336]}
          Length = 205

 Score = 24.5 bits (53), Expect = 4.5
 Identities = 10/110 (9%), Positives = 34/110 (30%), Gaps = 11/110 (10%)

Query: 36  LATNMFKKTADYLIGELSSTQADYEVLEK---------MNNATITKYSDMKQITVNISFS 86
           + T + KK  + L G       + +             M    ++  +D     ++    
Sbjct: 80  MGTTVVKKILEILTGRAPDNLLNLDEFSASALREIGNIMCGTYVSALADFLGFKIDTLPP 139

Query: 87  SARVPAYKQLI--PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 134
              +     +     +E+++   +  +   +   K++   + L +    +
Sbjct: 140 QLVIDMISAIFAEASIEELEDNSEDQIVFVETLLKVEEEEEPLTSYMMMI 189


>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 133

 Score = 24.2 bits (52), Expect = 4.8
 Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 33  LNELATNMFKKTADYLIGELSSTQADYEVLEKMNNATITK 72
           L      M +       G      A     EK+    +T+
Sbjct: 95  LTAAVMEMMQALRADGHGNDD-HSALACYYEKLAKVEVTR 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.123    0.319 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,081
Number of extensions: 17619
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 12
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.0 bits)