Query psy8909
Match_columns 138
No_of_seqs 72 out of 74
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:35:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4559|consensus 100.0 1.2E-36 2.7E-41 222.9 13.7 118 7-125 2-119 (120)
2 PF10046 BLOC1_2: Biogenesis o 100.0 1.7E-36 3.7E-41 218.1 14.0 99 37-135 1-99 (99)
3 PF10157 DUF2365: Uncharacteri 96.5 0.22 4.7E-06 38.7 14.0 87 31-117 62-148 (149)
4 PF09403 FadA: Adhesion protei 95.3 0.84 1.8E-05 34.6 12.2 103 14-136 8-113 (126)
5 PF04012 PspA_IM30: PspA/IM30 92.6 4.2 9.1E-05 32.1 14.2 55 40-94 2-60 (221)
6 PRK10698 phage shock protein P 91.7 6.3 0.00014 32.0 13.9 38 100-137 97-134 (222)
7 PF15358 TSKS: Testis-specific 89.1 6.5 0.00014 35.9 10.9 110 20-137 96-209 (558)
8 KOG0980|consensus 88.3 12 0.00025 36.9 12.6 82 54-135 407-492 (980)
9 PF10398 DUF2443: Protein of u 87.4 2.9 6.4E-05 29.4 6.1 76 40-128 1-76 (79)
10 TIGR02977 phageshock_pspA phag 86.6 15 0.00032 29.4 13.7 39 98-136 95-133 (219)
11 PRK11637 AmiB activator; Provi 86.2 22 0.00048 31.0 14.7 79 58-136 168-253 (428)
12 PF13094 CENP-Q: CENP-Q, a CEN 85.7 6.7 0.00015 29.7 8.0 43 95-137 34-76 (160)
13 TIGR03185 DNA_S_dndD DNA sulfu 84.7 24 0.00053 32.5 12.4 18 74-91 394-411 (650)
14 PF06103 DUF948: Bacterial pro 84.5 11 0.00023 25.9 8.4 44 72-115 45-88 (90)
15 PF02994 Transposase_22: L1 tr 84.4 2.3 4.9E-05 37.1 5.4 35 100-134 142-176 (370)
16 PF06825 HSBP1: Heat shock fac 84.2 4.3 9.4E-05 26.6 5.4 44 78-121 3-47 (54)
17 smart00787 Spc7 Spc7 kinetocho 83.6 27 0.0006 29.9 12.9 89 48-136 156-259 (312)
18 PF10779 XhlA: Haemolysin XhlA 82.2 5.8 0.00013 26.6 5.6 35 102-136 13-47 (71)
19 TIGR00996 Mtu_fam_mce virulenc 82.2 26 0.00056 28.6 13.7 26 107-132 257-282 (291)
20 PF07058 Myosin_HC-like: Myosi 81.8 15 0.00033 32.2 9.2 73 48-120 12-84 (351)
21 PF07544 Med9: RNA polymerase 81.7 5.5 0.00012 27.6 5.5 59 77-135 20-78 (83)
22 PF02994 Transposase_22: L1 tr 81.2 5.3 0.00011 34.8 6.4 42 96-137 145-186 (370)
23 PRK11637 AmiB activator; Provi 81.1 37 0.0008 29.6 15.4 16 11-26 1-16 (428)
24 PRK10807 paraquat-inducible pr 80.3 32 0.00069 31.6 11.4 102 31-132 416-527 (547)
25 KOG0804|consensus 80.1 49 0.0011 30.5 13.4 70 42-111 339-408 (493)
26 TIGR02132 phaR_Bmeg polyhydrox 80.1 11 0.00025 30.5 7.5 63 61-123 62-128 (189)
27 PF00261 Tropomyosin: Tropomyo 79.8 31 0.00066 27.9 12.6 50 52-101 73-122 (237)
28 PRK09039 hypothetical protein; 79.5 40 0.00086 29.1 15.2 92 46-137 77-179 (343)
29 PF04912 Dynamitin: Dynamitin 78.3 31 0.00067 29.9 10.2 23 114-136 366-388 (388)
30 PF00261 Tropomyosin: Tropomyo 75.0 43 0.00092 27.1 13.8 81 48-135 125-209 (237)
31 PRK14011 prefoldin subunit alp 75.0 16 0.00035 28.1 6.8 42 88-129 3-44 (144)
32 PF07195 FliD_C: Flagellar hoo 75.0 29 0.00062 28.0 8.6 108 27-137 91-232 (239)
33 PF10779 XhlA: Haemolysin XhlA 74.8 22 0.00047 23.8 6.7 37 100-136 4-40 (71)
34 PF11932 DUF3450: Protein of u 74.7 36 0.00078 27.6 9.2 50 70-122 55-104 (251)
35 PHA02562 46 endonuclease subun 74.5 61 0.0013 28.6 12.9 62 72-136 331-392 (562)
36 smart00787 Spc7 Spc7 kinetocho 74.1 56 0.0012 28.0 14.8 67 29-95 107-175 (312)
37 PF15112 DUF4559: Domain of un 74.1 48 0.001 28.8 10.1 44 80-123 259-302 (307)
38 TIGR03513 GldL_gliding gliding 74.0 48 0.001 27.2 13.3 86 38-128 102-188 (202)
39 PF12718 Tropomyosin_1: Tropom 73.7 37 0.00081 25.8 13.7 89 45-137 44-136 (143)
40 PRK03918 chromosome segregatio 73.6 80 0.0017 29.6 13.5 10 32-41 146-155 (880)
41 COG5158 SEC1 Proteins involved 73.4 41 0.00089 31.6 10.2 92 26-117 272-371 (582)
42 PF06657 Cep57_MT_bd: Centroso 73.0 28 0.00061 24.1 7.3 62 74-136 13-74 (79)
43 PF04912 Dynamitin: Dynamitin 72.5 64 0.0014 27.9 12.0 56 78-133 312-367 (388)
44 PRK15374 pathogenicity island 71.9 88 0.0019 29.5 11.8 90 35-128 116-209 (593)
45 KOG0250|consensus 71.8 1.2E+02 0.0025 30.7 14.7 95 32-126 256-351 (1074)
46 PRK15365 type III secretion sy 71.6 18 0.0004 26.8 6.0 26 86-111 10-35 (107)
47 PF06320 GCN5L1: GCN5-like pro 71.1 40 0.00087 25.1 10.3 71 62-136 35-105 (121)
48 PF10146 zf-C4H2: Zinc finger- 71.1 58 0.0013 26.9 12.9 61 73-133 24-84 (230)
49 TIGR00606 rad50 rad50. This fa 70.8 97 0.0021 31.2 12.7 79 48-126 827-905 (1311)
50 PF03310 Cauli_DNA-bind: Cauli 69.5 20 0.00044 27.2 6.1 58 77-134 2-69 (121)
51 PF10046 BLOC1_2: Biogenesis o 69.3 38 0.00082 24.0 10.9 67 70-136 20-93 (99)
52 PF10168 Nup88: Nuclear pore c 68.3 1.1E+02 0.0024 29.3 12.0 80 55-137 534-614 (717)
53 PF14662 CCDC155: Coiled-coil 67.8 66 0.0014 26.2 12.6 61 77-137 35-95 (193)
54 COG1842 PspA Phage shock prote 67.1 70 0.0015 26.3 14.2 58 40-97 3-64 (225)
55 PF04102 SlyX: SlyX; InterPro 66.9 21 0.00046 23.8 5.2 29 107-135 23-51 (69)
56 PHA03395 p10 fibrous body prot 66.5 24 0.00051 25.4 5.6 50 67-116 14-63 (87)
57 PRK08032 fliD flagellar cappin 66.3 64 0.0014 28.8 9.6 107 28-137 313-445 (462)
58 PF15272 BBP1_C: Spindle pole 65.8 62 0.0013 26.4 8.6 55 71-129 72-127 (196)
59 PF04156 IncA: IncA protein; 65.6 59 0.0013 24.8 13.0 47 90-136 139-185 (191)
60 COG4768 Uncharacterized protei 65.5 62 0.0014 25.1 8.9 64 42-123 37-101 (139)
61 PRK03918 chromosome segregatio 65.4 1.2E+02 0.0026 28.4 13.1 33 99-131 304-336 (880)
62 PF08317 Spc7: Spc7 kinetochor 65.1 85 0.0019 26.6 13.2 38 47-84 160-197 (325)
63 COG1382 GimC Prefoldin, chaper 64.4 59 0.0013 24.5 8.5 36 102-137 70-105 (119)
64 COG1382 GimC Prefoldin, chaper 64.4 19 0.00042 27.1 5.1 69 69-137 11-91 (119)
65 PF10018 Med4: Vitamin-D-recep 64.3 57 0.0012 25.5 8.0 35 102-136 22-56 (188)
66 PRK04863 mukB cell division pr 64.3 1.9E+02 0.0041 30.2 13.5 39 68-106 304-342 (1486)
67 TIGR02977 phageshock_pspA phag 64.2 73 0.0016 25.4 10.9 40 98-137 162-202 (219)
68 PF14193 DUF4315: Domain of un 63.2 27 0.00059 24.6 5.4 34 103-136 2-35 (83)
69 PF08317 Spc7: Spc7 kinetochor 63.0 94 0.002 26.3 14.5 23 29-51 112-134 (325)
70 PF03915 AIP3: Actin interacti 62.4 1.2E+02 0.0026 27.3 12.1 100 35-134 176-278 (424)
71 PRK04778 septation ring format 61.4 1.1E+02 0.0023 28.1 10.2 59 50-109 355-414 (569)
72 COG1730 GIM5 Predicted prefold 61.0 37 0.0008 26.3 6.2 58 79-136 78-135 (145)
73 PF05531 NPV_P10: Nucleopolyhe 60.1 56 0.0012 22.8 7.5 13 83-95 9-21 (75)
74 KOG0804|consensus 60.1 87 0.0019 28.9 9.2 35 69-103 352-386 (493)
75 PF08656 DASH_Dad3: DASH compl 59.9 23 0.00051 24.8 4.5 45 68-112 7-51 (78)
76 KOG1853|consensus 59.2 1.2E+02 0.0026 26.3 11.7 86 41-136 39-125 (333)
77 KOG0933|consensus 59.0 1.9E+02 0.0041 29.5 11.8 86 47-136 688-775 (1174)
78 PF06103 DUF948: Bacterial pro 58.4 56 0.0012 22.2 9.6 58 64-121 30-87 (90)
79 PF10158 LOH1CR12: Tumour supp 57.6 81 0.0018 23.9 11.6 49 70-118 55-103 (131)
80 PF13747 DUF4164: Domain of un 57.4 65 0.0014 22.7 7.1 10 105-114 35-44 (89)
81 PF05266 DUF724: Protein of un 57.3 98 0.0021 24.7 11.7 16 22-37 29-44 (190)
82 COG4026 Uncharacterized protei 57.1 1.2E+02 0.0026 25.8 9.0 34 103-136 171-204 (290)
83 PF14131 DUF4298: Domain of un 56.9 56 0.0012 22.9 6.1 38 87-124 2-39 (90)
84 COG4942 Membrane-bound metallo 56.9 1.1E+02 0.0024 27.7 9.3 33 103-135 74-106 (420)
85 COG1463 Ttg2C ABC-type transpo 56.8 1.3E+02 0.0027 25.8 11.9 44 61-104 163-206 (359)
86 COG5420 Uncharacterized conser 56.6 63 0.0014 22.3 6.6 56 61-116 14-69 (71)
87 PHA02562 46 endonuclease subun 56.0 1.4E+02 0.0031 26.3 15.5 52 70-121 298-349 (562)
88 PF03961 DUF342: Protein of un 55.7 1.3E+02 0.0029 26.4 9.6 34 101-134 374-407 (451)
89 PF09730 BicD: Microtubule-ass 55.7 2E+02 0.0044 27.8 11.9 67 70-136 358-432 (717)
90 cd00632 Prefoldin_beta Prefold 55.3 46 0.00099 23.5 5.6 34 103-136 71-104 (105)
91 COG1730 GIM5 Predicted prefold 55.2 67 0.0014 24.9 6.8 43 88-130 6-48 (145)
92 PF07083 DUF1351: Protein of u 55.2 1.1E+02 0.0024 24.6 8.7 66 69-134 37-107 (215)
93 TIGR00996 Mtu_fam_mce virulenc 54.9 1.1E+02 0.0025 24.7 10.7 31 75-105 189-219 (291)
94 PF11433 DUF3198: Protein of u 54.8 33 0.00073 22.3 4.2 25 109-133 21-46 (51)
95 PF01496 V_ATPase_I: V-type AT 54.1 4.2 9.1E-05 38.1 0.0 35 103-137 68-102 (759)
96 PRK06798 fliD flagellar cappin 53.7 1.5E+02 0.0032 26.5 9.6 72 63-137 336-418 (440)
97 KOG0996|consensus 53.3 2.8E+02 0.006 28.7 12.6 72 48-119 498-573 (1293)
98 cd04779 HTH_MerR-like_sg4 Heli 52.9 61 0.0013 24.3 6.1 24 99-122 85-108 (134)
99 TIGR02338 gimC_beta prefoldin, 52.9 82 0.0018 22.5 9.7 35 103-137 68-102 (110)
100 cd04779 HTH_MerR-like_sg4 Heli 52.8 96 0.0021 23.3 7.4 33 98-130 77-109 (134)
101 PRK14011 prefoldin subunit alp 52.5 68 0.0015 24.6 6.4 40 98-137 91-134 (144)
102 PF15466 DUF4635: Domain of un 52.4 28 0.0006 26.7 4.2 23 106-128 102-124 (135)
103 PF12308 Noelin-1: Neurogenesi 52.1 80 0.0017 23.3 6.4 19 118-136 70-88 (101)
104 PF05615 THOC7: Tho complex su 51.8 94 0.002 22.9 9.8 75 52-129 58-133 (139)
105 PRK07857 hypothetical protein; 51.7 18 0.00039 26.7 3.0 20 95-114 28-47 (106)
106 PF08946 Osmo_CC: Osmosensory 51.7 27 0.00059 22.4 3.4 16 102-117 19-34 (46)
107 PF04799 Fzo_mitofusin: fzo-li 51.6 1.2E+02 0.0027 24.2 8.9 80 30-115 85-164 (171)
108 cd04776 HTH_GnyR Helix-Turn-He 51.0 93 0.002 22.5 7.3 32 100-131 85-116 (118)
109 PF13747 DUF4164: Domain of un 50.9 85 0.0018 22.1 8.9 22 101-122 52-73 (89)
110 PF07888 CALCOCO1: Calcium bin 50.6 2.2E+02 0.0047 26.7 13.5 54 45-98 138-191 (546)
111 PLN02939 transferase, transfer 50.4 1.3E+02 0.0029 30.0 9.4 53 83-135 231-283 (977)
112 KOG0161|consensus 50.4 3.6E+02 0.0078 29.2 13.8 89 45-136 1451-1539(1930)
113 PRK00965 tetrahydromethanopter 50.1 17 0.00037 26.6 2.6 18 104-121 33-50 (96)
114 PRK07737 fliD flagellar cappin 50.1 2E+02 0.0043 26.1 10.0 32 102-136 448-479 (501)
115 PF10205 KLRAQ: Predicted coil 49.9 1E+02 0.0022 22.7 9.6 65 69-136 3-67 (102)
116 cd04776 HTH_GnyR Helix-Turn-He 49.1 96 0.0021 22.4 6.5 30 105-134 83-112 (118)
117 TIGR01795 CM_mono_cladeE monof 48.9 22 0.00047 25.3 3.0 20 95-114 3-22 (94)
118 PRK08724 fliD flagellar cappin 48.9 2.1E+02 0.0045 27.5 10.2 17 120-136 639-655 (673)
119 PF00512 HisKA: His Kinase A ( 48.9 55 0.0012 20.3 4.7 53 74-126 11-64 (68)
120 COG3883 Uncharacterized protei 48.4 1.5E+02 0.0034 25.2 8.5 63 67-132 34-96 (265)
121 COG3352 FlaC Putative archaeal 48.3 1.3E+02 0.0029 23.8 7.5 48 72-121 87-134 (157)
122 PF09278 MerR-DNA-bind: MerR, 48.0 37 0.0008 21.4 3.7 26 98-123 39-64 (65)
123 PF09730 BicD: Microtubule-ass 47.9 2.1E+02 0.0046 27.6 10.1 27 68-94 363-389 (717)
124 PF05010 TACC: Transforming ac 47.9 1.5E+02 0.0033 24.1 12.6 60 50-112 76-135 (207)
125 KOG3684|consensus 47.4 1.5E+02 0.0034 27.3 8.8 63 59-121 396-460 (489)
126 TIGR01801 CM_A chorismate muta 47.3 22 0.00048 25.6 2.8 19 96-114 5-23 (102)
127 PRK06285 chorismate mutase; Pr 47.1 26 0.00056 24.7 3.1 20 95-114 7-26 (96)
128 PRK07248 hypothetical protein; 46.5 23 0.0005 24.3 2.8 18 97-114 3-20 (87)
129 KOG1003|consensus 46.5 1.7E+02 0.0036 24.2 11.8 51 47-97 92-142 (205)
130 TIGR01791 CM_archaeal chorisma 46.3 23 0.0005 24.0 2.7 18 97-114 1-18 (83)
131 PHA02414 hypothetical protein 46.3 1.2E+02 0.0026 22.5 9.0 86 30-126 3-88 (111)
132 TIGR01805 CM_mono_grmpos monof 45.9 24 0.00051 23.9 2.7 18 97-114 1-18 (81)
133 PF03670 UPF0184: Uncharacteri 45.8 78 0.0017 22.5 5.4 40 71-110 26-65 (83)
134 PRK06664 fliD flagellar hook-a 45.6 2.3E+02 0.005 26.9 9.9 19 28-46 491-509 (661)
135 KOG0811|consensus 45.1 1E+02 0.0022 26.2 6.8 43 77-119 179-225 (269)
136 TIGR01808 CM_M_hiGC-arch monof 44.8 25 0.00055 23.8 2.7 19 96-114 1-19 (74)
137 PF05440 MtrB: Tetrahydrometha 44.6 22 0.00048 26.0 2.5 18 104-121 32-49 (97)
138 TIGR01807 CM_P2 chorismate mut 44.5 26 0.00057 23.4 2.7 18 97-114 1-18 (76)
139 PRK09343 prefoldin subunit bet 44.4 1.3E+02 0.0027 22.2 7.0 27 109-135 71-97 (121)
140 cd00082 HisKA Histidine Kinase 44.4 59 0.0013 18.4 6.5 25 101-125 40-64 (65)
141 KOG2189|consensus 44.3 51 0.0011 32.2 5.5 70 67-136 52-126 (829)
142 TIGR03185 DNA_S_dndD DNA sulfu 43.9 2.7E+02 0.0058 25.8 14.3 27 105-131 476-502 (650)
143 cd04769 HTH_MerR2 Helix-Turn-H 43.7 1E+02 0.0023 21.9 6.0 30 100-129 84-113 (116)
144 PF14257 DUF4349: Domain of un 43.6 1.7E+02 0.0038 23.6 8.4 45 70-115 131-175 (262)
145 COG4477 EzrA Negative regulato 43.5 2.9E+02 0.0063 26.1 10.6 81 51-137 355-435 (570)
146 PRK00846 hypothetical protein; 43.3 1.1E+02 0.0024 21.3 6.2 33 104-136 29-61 (77)
147 PRK07075 isochorismate-pyruvat 43.3 30 0.00066 24.7 3.1 20 95-114 8-27 (101)
148 PF02646 RmuC: RmuC family; I 43.1 2E+02 0.0044 24.2 9.8 65 71-135 226-291 (304)
149 PF10552 ORF6C: ORF6C domain; 42.9 58 0.0012 23.6 4.5 40 92-131 5-44 (116)
150 PF12207 DUF3600: Domain of un 42.7 45 0.00098 26.4 4.1 40 87-128 79-118 (162)
151 PF13422 DUF4110: Domain of un 42.5 38 0.00083 24.4 3.5 69 35-120 16-84 (96)
152 cd00584 Prefoldin_alpha Prefol 42.2 1.1E+02 0.0024 22.0 6.0 37 90-126 8-44 (129)
153 PF07889 DUF1664: Protein of u 42.2 1.5E+02 0.0033 22.4 11.4 17 120-136 107-123 (126)
154 PF04740 LXG: LXG domain of WX 42.1 1.6E+02 0.0034 22.6 11.8 37 95-131 152-192 (204)
155 smart00388 HisKA His Kinase A 42.1 68 0.0015 18.4 5.3 26 101-126 37-62 (66)
156 PF14712 Snapin_Pallidin: Snap 42.0 1.1E+02 0.0024 20.8 8.0 31 97-127 59-89 (92)
157 KOG4674|consensus 42.0 4.8E+02 0.01 28.2 13.6 53 42-94 1152-1204(1822)
158 COG4062 MtrB Tetrahydromethano 41.8 27 0.00059 25.9 2.6 19 104-122 33-51 (108)
159 TIGR02916 PEP_his_kin putative 41.3 2.8E+02 0.0061 25.4 12.2 95 30-124 439-534 (679)
160 PF07106 TBPIP: Tat binding pr 41.2 87 0.0019 23.8 5.5 30 73-102 74-103 (169)
161 PF00038 Filament: Intermediat 40.9 2E+02 0.0043 23.5 14.8 18 23-40 157-174 (312)
162 PRK02224 chromosome segregatio 40.9 3.2E+02 0.0069 25.8 15.7 31 82-112 231-261 (880)
163 PF01920 Prefoldin_2: Prefoldi 40.8 1.1E+02 0.0023 20.8 5.5 34 103-136 63-96 (106)
164 TIGR01803 CM-like chorismate m 40.7 31 0.00068 23.4 2.7 18 97-114 1-18 (82)
165 PF14584 DUF4446: Protein of u 40.4 1.7E+02 0.0037 22.6 7.8 27 97-123 48-74 (151)
166 cd07672 F-BAR_PSTPIP2 The F-BA 40.4 2.1E+02 0.0045 23.5 12.2 77 18-98 2-81 (240)
167 PF13805 Pil1: Eisosome compon 40.3 2.4E+02 0.0051 24.1 13.0 39 74-112 96-141 (271)
168 TIGR01799 CM_T chorismate muta 39.7 34 0.00073 23.3 2.7 18 97-114 1-18 (83)
169 PF14257 DUF4349: Domain of un 39.7 2E+02 0.0044 23.2 7.7 54 82-136 136-189 (262)
170 TIGR01010 BexC_CtrB_KpsE polys 39.6 2.3E+02 0.005 23.9 11.2 53 71-123 177-235 (362)
171 KOG0980|consensus 39.5 4.1E+02 0.0089 26.7 10.8 69 69-137 408-480 (980)
172 TIGR03545 conserved hypothetic 39.4 1.8E+02 0.0039 27.0 8.1 12 45-56 152-163 (555)
173 cd01109 HTH_YyaN Helix-Turn-He 39.3 1.4E+02 0.003 21.1 6.2 29 98-126 82-110 (113)
174 PF10475 DUF2450: Protein of u 39.2 2.2E+02 0.0048 23.5 12.3 50 64-113 50-99 (291)
175 PF15450 DUF4631: Domain of un 38.9 3.3E+02 0.0073 25.5 13.5 108 29-136 302-418 (531)
176 PRK02224 chromosome segregatio 38.8 3.4E+02 0.0075 25.6 16.1 10 32-41 150-159 (880)
177 TIGR02338 gimC_beta prefoldin, 38.8 1.4E+02 0.0031 21.2 6.9 41 95-135 67-107 (110)
178 PF12329 TMF_DNA_bd: TATA elem 38.7 1.2E+02 0.0027 20.5 9.2 54 83-136 14-67 (74)
179 PRK01203 prefoldin subunit alp 38.5 1.1E+02 0.0023 23.4 5.5 34 102-135 87-120 (130)
180 TIGR00634 recN DNA repair prot 38.5 3.1E+02 0.0066 24.9 12.0 14 100-113 327-340 (563)
181 PRK15326 type III secretion sy 38.2 87 0.0019 22.1 4.6 50 29-78 19-73 (80)
182 PF03961 DUF342: Protein of un 38.1 2.8E+02 0.0061 24.4 10.4 8 31-38 330-337 (451)
183 PF10473 CENP-F_leu_zip: Leuci 37.9 1.9E+02 0.004 22.3 14.2 93 40-132 21-117 (140)
184 KOG0996|consensus 37.6 2.6E+02 0.0056 28.9 9.2 85 15-117 765-849 (1293)
185 PF15397 DUF4618: Domain of un 37.6 2.5E+02 0.0055 23.7 10.2 79 53-137 9-88 (258)
186 PF03233 Cauli_AT: Aphid trans 37.0 2.1E+02 0.0047 22.7 8.1 119 11-135 28-154 (163)
187 TIGR00293 prefoldin, archaeal 37.0 1.5E+02 0.0032 21.2 5.9 26 97-122 15-40 (126)
188 PRK13182 racA polar chromosome 36.9 2.1E+02 0.0045 22.6 7.7 47 77-123 98-146 (175)
189 COG1345 FliD Flagellar capping 36.7 3.3E+02 0.0072 24.9 9.9 107 29-135 372-480 (483)
190 TIGR02976 phageshock_pspB phag 36.6 91 0.002 21.6 4.5 43 71-119 24-66 (75)
191 TIGR01797 CM_P_1 chorismate mu 36.6 40 0.00086 23.0 2.7 17 98-114 2-18 (83)
192 PF09074 Mer2: Mer2; InterPro 36.5 2.3E+02 0.0051 23.0 8.3 31 105-135 80-111 (190)
193 PF05667 DUF812: Protein of un 36.5 3.7E+02 0.008 25.3 11.4 39 99-137 444-482 (594)
194 PF04380 BMFP: Membrane fusoge 36.5 1.4E+02 0.003 20.4 6.9 23 62-84 41-63 (79)
195 PF06008 Laminin_I: Laminin Do 36.5 2.3E+02 0.005 23.0 11.9 121 16-137 9-134 (264)
196 KOG4117|consensus 36.4 1.4E+02 0.0031 20.6 6.7 47 43-92 16-62 (73)
197 KOG0612|consensus 36.3 4E+02 0.0087 27.7 10.3 39 96-134 568-606 (1317)
198 PHA02675 ORF104 fusion protein 36.3 1E+02 0.0023 22.2 4.8 27 109-135 37-63 (90)
199 cd00890 Prefoldin Prefoldin is 35.9 1.5E+02 0.0034 20.8 6.5 39 97-135 89-127 (129)
200 PF08775 ParB: ParB family; I 35.8 83 0.0018 23.7 4.5 39 54-92 7-45 (127)
201 PF02388 FemAB: FemAB family; 35.6 2.7E+02 0.0059 24.3 8.3 18 55-72 192-209 (406)
202 PF11853 DUF3373: Protein of u 35.3 33 0.00072 31.5 2.7 21 103-123 32-52 (489)
203 PF07439 DUF1515: Protein of u 35.2 1.9E+02 0.0042 21.7 8.1 53 74-126 11-64 (112)
204 COG1792 MreC Cell shape-determ 35.1 2.7E+02 0.0059 23.4 8.3 55 74-128 52-106 (284)
205 PF05622 HOOK: HOOK protein; 35.1 13 0.00028 34.8 0.0 59 72-130 268-326 (713)
206 PRK09239 chorismate mutase; Pr 34.8 61 0.0013 23.4 3.6 21 94-114 9-29 (104)
207 PF01920 Prefoldin_2: Prefoldi 34.7 1.5E+02 0.0032 20.1 8.0 28 104-131 71-98 (106)
208 cd07639 BAR_ACAP1 The Bin/Amph 34.7 2.5E+02 0.0054 22.7 10.5 106 26-132 7-121 (200)
209 COG3883 Uncharacterized protei 34.7 2.9E+02 0.0063 23.5 10.8 38 79-116 50-87 (265)
210 KOG3366|consensus 34.6 1.2E+02 0.0027 24.3 5.5 49 86-134 67-123 (172)
211 PF11083 Streptin-Immun: Lanti 34.3 1.3E+02 0.0027 22.2 5.1 20 103-122 71-90 (99)
212 KOG0612|consensus 34.3 5E+02 0.011 27.0 10.6 39 95-133 494-532 (1317)
213 PRK01203 prefoldin subunit alp 34.2 1.4E+02 0.003 22.8 5.5 36 95-130 7-42 (130)
214 PHA03395 p10 fibrous body prot 34.0 1.5E+02 0.0032 21.4 5.3 44 82-128 8-51 (87)
215 cd04789 HTH_Cfa Helix-Turn-Hel 33.9 88 0.0019 22.0 4.2 27 99-125 75-101 (102)
216 KOG4514|consensus 33.8 2.7E+02 0.0059 23.0 12.7 34 89-122 186-219 (222)
217 PF06009 Laminin_II: Laminin D 33.7 14 0.0003 27.7 0.0 22 100-121 50-71 (138)
218 PF13887 MRF_C1: Myelin gene r 33.5 48 0.001 20.2 2.3 21 117-137 15-35 (36)
219 COG0497 RecN ATPase involved i 33.2 4.2E+02 0.009 24.9 9.6 44 76-119 309-352 (557)
220 PF13166 AAA_13: AAA domain 33.1 3.9E+02 0.0084 24.5 15.7 37 23-59 260-296 (712)
221 PF13851 GAS: Growth-arrest sp 33.0 2.5E+02 0.0055 22.3 12.9 56 82-137 66-121 (201)
222 cd01106 HTH_TipAL-Mta Helix-Tu 33.0 1.6E+02 0.0035 20.4 5.4 28 96-123 74-101 (103)
223 KOG4515|consensus 33.0 2.8E+02 0.0061 22.9 8.8 52 73-124 122-177 (217)
224 cd00193 t_SNARE Soluble NSF (N 32.9 1.1E+02 0.0024 18.2 7.7 34 80-113 8-45 (60)
225 PF05600 DUF773: Protein of un 32.9 3.9E+02 0.0084 24.5 12.0 76 61-136 412-487 (507)
226 PF09340 NuA4: Histone acetylt 32.9 1.2E+02 0.0026 21.0 4.6 26 97-122 4-29 (80)
227 cd07666 BAR_SNX7 The Bin/Amphi 32.8 2.9E+02 0.0063 23.0 9.8 67 70-136 53-134 (243)
228 PF11471 Sugarporin_N: Maltopo 32.7 1.3E+02 0.0028 19.8 4.6 31 106-136 29-59 (60)
229 cd07665 BAR_SNX1 The Bin/Amphi 32.7 1E+02 0.0022 25.5 4.9 43 88-130 11-57 (234)
230 PRK04778 septation ring format 32.7 3.9E+02 0.0085 24.4 13.5 25 55-79 315-339 (569)
231 KOG0977|consensus 32.6 4.3E+02 0.0092 24.9 14.0 82 48-132 47-129 (546)
232 PRK13729 conjugal transfer pil 32.6 2.2E+02 0.0047 26.3 7.4 20 71-90 69-88 (475)
233 KOG0161|consensus 32.5 6.9E+02 0.015 27.2 13.3 92 44-135 902-997 (1930)
234 PF04091 Sec15: Exocyst comple 32.1 3.1E+02 0.0068 23.2 8.0 42 87-129 79-120 (311)
235 PF00435 Spectrin: Spectrin re 31.9 1.4E+02 0.003 19.0 8.8 26 72-97 42-67 (105)
236 PF11101 DUF2884: Protein of u 31.8 2.8E+02 0.0061 22.5 10.2 32 81-112 185-216 (229)
237 TIGR03513 GldL_gliding gliding 31.6 2.9E+02 0.0063 22.6 8.8 24 84-107 171-194 (202)
238 COG3165 Uncharacterized protei 31.6 3E+02 0.0064 22.7 9.5 86 47-132 97-202 (204)
239 PF12329 TMF_DNA_bd: TATA elem 31.5 1.7E+02 0.0036 19.8 6.9 36 97-132 35-70 (74)
240 TIGR02168 SMC_prok_B chromosom 31.4 4.6E+02 0.01 24.9 15.8 6 30-35 178-183 (1179)
241 PF08232 Striatin: Striatin fa 31.4 1.4E+02 0.0031 22.3 5.2 37 99-135 29-65 (134)
242 PF05565 Sipho_Gp157: Siphovir 31.3 2.4E+02 0.0052 21.6 9.8 42 95-136 40-81 (162)
243 smart00721 BAR BAR domain. 31.2 2.4E+02 0.0053 21.6 10.8 107 22-129 28-158 (239)
244 COG2433 Uncharacterized conser 31.1 4.9E+02 0.011 25.1 11.5 76 62-137 434-509 (652)
245 PF06160 EzrA: Septation ring 31.0 4.2E+02 0.0091 24.3 14.3 27 104-130 196-222 (560)
246 PF04380 BMFP: Membrane fusoge 30.9 1.8E+02 0.0038 19.9 8.4 26 90-115 52-77 (79)
247 PF00170 bZIP_1: bZIP transcri 30.9 1.5E+02 0.0032 19.0 5.8 8 66-73 13-20 (64)
248 PHA03386 P10 fibrous body prot 30.8 1.8E+02 0.004 21.2 5.4 15 72-86 20-34 (94)
249 KOG2561|consensus 30.5 90 0.002 29.1 4.6 85 4-105 480-567 (568)
250 PF11083 Streptin-Immun: Lanti 30.5 98 0.0021 22.8 4.0 24 106-129 67-90 (99)
251 COG5374 Uncharacterized conser 30.5 1.6E+02 0.0035 24.0 5.6 22 29-50 87-108 (192)
252 PF03670 UPF0184: Uncharacteri 30.4 2E+02 0.0044 20.4 6.4 28 105-132 43-70 (83)
253 cd00632 Prefoldin_beta Prefold 30.4 1.9E+02 0.0042 20.2 9.7 38 100-137 61-98 (105)
254 PF13815 Dzip-like_N: Iguana/D 30.3 2.1E+02 0.0046 20.7 6.2 36 102-137 80-115 (118)
255 PF00957 Synaptobrevin: Synapt 30.3 1.7E+02 0.0038 19.7 8.6 30 102-131 31-60 (89)
256 PF07586 HXXSHH: Protein of un 30.3 1.2E+02 0.0027 25.1 5.1 25 94-118 183-207 (302)
257 KOG3091|consensus 30.2 2.2E+02 0.0048 26.5 7.0 52 82-135 335-386 (508)
258 PF05461 ApoL: Apolipoprotein 30.2 2.1E+02 0.0045 24.6 6.6 30 97-126 64-93 (313)
259 PRK05431 seryl-tRNA synthetase 30.1 2.5E+02 0.0055 24.8 7.3 48 74-121 45-92 (425)
260 COG0497 RecN ATPase involved i 30.1 4.7E+02 0.01 24.6 9.5 28 76-103 264-291 (557)
261 smart00150 SPEC Spectrin repea 30.1 1.5E+02 0.0033 18.8 8.0 29 82-110 32-60 (101)
262 PRK08724 fliD flagellar cappin 30.0 5.1E+02 0.011 25.0 11.0 95 29-131 572-671 (673)
263 TIGR00634 recN DNA repair prot 30.0 4.3E+02 0.0092 24.0 13.3 37 80-116 324-360 (563)
264 PF10393 Matrilin_ccoil: Trime 29.7 90 0.002 19.9 3.3 16 114-129 25-40 (47)
265 COG3416 Uncharacterized protei 29.5 1E+02 0.0023 25.7 4.4 29 109-137 48-76 (233)
266 PF14591 AF0941-like: AF0941-l 29.3 1.1E+02 0.0024 23.4 4.3 29 109-137 65-93 (127)
267 PF15619 Lebercilin: Ciliary p 29.1 3E+02 0.0065 22.0 13.5 81 44-124 20-111 (194)
268 PRK09343 prefoldin subunit bet 29.0 2.3E+02 0.0051 20.7 7.6 35 101-135 77-111 (121)
269 TIGR00414 serS seryl-tRNA synt 28.9 2.6E+02 0.0057 24.7 7.2 26 97-122 71-96 (418)
270 smart00338 BRLZ basic region l 28.9 1.6E+02 0.0035 18.8 5.5 27 66-92 13-40 (65)
271 PRK13729 conjugal transfer pil 28.8 4.1E+02 0.0089 24.5 8.5 20 113-132 101-120 (475)
272 KOG4360|consensus 28.7 5.1E+02 0.011 24.6 13.5 113 24-136 162-281 (596)
273 PRK14067 exodeoxyribonuclease 28.7 49 0.0011 23.1 2.1 37 93-129 12-52 (80)
274 PRK13677 hypothetical protein; 28.6 2.1E+02 0.0045 21.9 5.6 50 70-119 63-112 (125)
275 PF11887 DUF3407: Protein of u 28.5 3.4E+02 0.0074 22.4 13.3 105 29-134 29-148 (267)
276 cd07666 BAR_SNX7 The Bin/Amphi 28.5 1.8E+02 0.0039 24.2 5.8 49 74-122 33-81 (243)
277 PF13348 Y_phosphatase3C: Tyro 28.4 76 0.0016 20.3 2.9 35 80-114 28-63 (68)
278 PRK04654 sec-independent trans 28.4 3.5E+02 0.0075 22.5 9.9 29 75-103 69-97 (214)
279 cd04786 HTH_MerR-like_sg7 Heli 28.3 1.2E+02 0.0026 22.5 4.3 32 99-130 82-113 (131)
280 PF10280 Med11: Mediator compl 28.3 1.8E+02 0.0038 21.2 5.1 29 99-127 3-32 (117)
281 PRK14064 exodeoxyribonuclease 27.8 51 0.0011 22.6 2.1 22 107-128 29-50 (75)
282 PF14728 PHTB1_C: PTHB1 C-term 27.7 3.1E+02 0.0068 24.2 7.4 31 97-127 199-229 (377)
283 PF10152 DUF2360: Predicted co 27.4 1.1E+02 0.0025 23.2 4.1 21 97-117 23-43 (148)
284 PRK10884 SH3 domain-containing 27.3 3.3E+02 0.0072 22.0 9.1 65 48-118 98-162 (206)
285 COG1196 Smc Chromosome segrega 27.1 6.5E+02 0.014 25.2 15.6 46 50-95 239-284 (1163)
286 PF07462 MSP1_C: Merozoite sur 27.0 5.5E+02 0.012 24.3 10.9 90 44-136 460-567 (574)
287 TIGR00293 prefoldin, archaeal 26.7 2.4E+02 0.0052 20.1 5.6 36 93-128 4-39 (126)
288 PF05667 DUF812: Protein of un 26.6 5.4E+02 0.012 24.2 12.1 87 50-136 335-432 (594)
289 cd00890 Prefoldin Prefoldin is 26.6 2.3E+02 0.005 19.8 6.1 31 95-125 13-43 (129)
290 PF01627 Hpt: Hpt domain; Int 26.6 1.7E+02 0.0038 18.4 5.1 19 106-124 72-90 (90)
291 cd07671 F-BAR_PSTPIP1 The F-BA 26.5 3.6E+02 0.0078 22.1 10.8 23 18-40 2-24 (242)
292 PRK11199 tyrA bifunctional cho 26.3 70 0.0015 27.6 3.1 20 95-114 3-22 (374)
293 PRK06034 hypothetical protein; 26.3 63 0.0014 27.6 2.7 20 95-114 9-28 (279)
294 COG3879 Uncharacterized protei 26.2 4E+02 0.0087 22.5 9.3 37 54-91 48-84 (247)
295 PF10498 IFT57: Intra-flagella 26.1 4.5E+02 0.0098 23.0 11.2 39 46-84 262-300 (359)
296 PRK10869 recombination and rep 26.0 5.2E+02 0.011 23.7 10.2 37 79-115 318-354 (553)
297 PF14782 BBS2_C: Ciliary BBSom 26.0 4.9E+02 0.011 23.5 10.0 59 55-114 343-401 (431)
298 PF11803 UXS1_N: UDP-glucurona 25.8 1.4E+02 0.0031 21.0 4.0 40 71-112 35-74 (78)
299 COG1722 XseB Exonuclease VII s 25.8 82 0.0018 22.0 2.8 11 107-117 33-43 (81)
300 PF04012 PspA_IM30: PspA/IM30 25.8 3.2E+02 0.007 21.3 14.2 105 31-136 26-132 (221)
301 PF03114 BAR: BAR domain; Int 25.5 2.8E+02 0.0062 20.5 15.0 101 30-130 35-156 (229)
302 cd07664 BAR_SNX2 The Bin/Amphi 25.4 2E+02 0.0043 23.6 5.4 33 97-129 24-56 (234)
303 cd07307 BAR The Bin/Amphiphysi 25.4 2.5E+02 0.0055 19.9 14.0 58 73-130 56-119 (194)
304 PRK05589 peptide chain release 25.4 4.4E+02 0.0096 23.0 7.8 12 71-82 18-29 (325)
305 PF05929 Phage_GPO: Phage caps 25.3 4.3E+02 0.0093 22.5 8.7 41 38-92 173-213 (276)
306 KOG4593|consensus 25.2 5.5E+02 0.012 25.0 8.9 8 12-19 351-358 (716)
307 KOG4117|consensus 25.2 2.4E+02 0.0052 19.5 6.7 47 75-121 13-60 (73)
308 PRK14596 peptide deformylase; 25.1 77 0.0017 25.5 2.9 30 14-46 11-40 (199)
309 KOG0810|consensus 25.1 1.2E+02 0.0026 26.0 4.3 29 97-125 35-63 (297)
310 cd07629 BAR_Atg20p The Bin/Amp 25.0 3.4E+02 0.0073 21.2 8.5 32 61-92 23-54 (187)
311 PRK00286 xseA exodeoxyribonucl 24.9 4.7E+02 0.01 22.8 13.1 47 16-62 248-294 (438)
312 PRK14063 exodeoxyribonuclease 24.8 64 0.0014 22.2 2.1 23 107-129 28-50 (76)
313 PRK00578 prfB peptide chain re 24.8 4.9E+02 0.011 23.0 9.0 29 32-63 8-36 (367)
314 PF03148 Tektin: Tektin family 24.7 4.7E+02 0.01 22.8 12.4 40 94-133 264-303 (384)
315 PF15066 CAGE1: Cancer-associa 24.4 5.9E+02 0.013 23.8 10.3 61 56-116 316-376 (527)
316 cd04770 HTH_HMRTR Helix-Turn-H 24.4 2.6E+02 0.0057 19.8 7.0 28 99-126 83-110 (123)
317 PRK06664 fliD flagellar hook-a 24.2 5.1E+02 0.011 24.7 8.5 56 79-134 601-657 (661)
318 cd07622 BAR_SNX4 The Bin/Amphi 24.2 3.7E+02 0.008 21.4 8.6 60 57-130 28-88 (201)
319 PF02346 Vac_Fusion: Chordopox 24.2 2.2E+02 0.0048 18.8 5.0 26 106-131 26-51 (57)
320 PRK15039 transcriptional repre 24.1 1.4E+02 0.0031 21.2 3.9 33 99-132 10-42 (90)
321 cd01107 HTH_BmrR Helix-Turn-He 24.1 2.6E+02 0.0057 19.6 5.8 26 100-125 80-105 (108)
322 PRK05724 acetyl-CoA carboxylas 24.1 1.6E+02 0.0035 25.5 4.9 22 72-93 4-25 (319)
323 cd04783 HTH_MerR1 Helix-Turn-H 24.1 1.4E+02 0.0031 21.5 4.0 29 101-129 83-111 (126)
324 PF07889 DUF1664: Protein of u 24.1 3.2E+02 0.0069 20.6 11.9 29 102-130 96-124 (126)
325 TIGR02677 conserved hypothetic 24.0 5.6E+02 0.012 23.4 11.9 77 60-136 124-215 (494)
326 PF07851 TMPIT: TMPIT-like pro 24.0 4.9E+02 0.011 22.8 11.1 74 51-124 5-90 (330)
327 PRK14068 exodeoxyribonuclease 24.0 67 0.0014 22.2 2.1 23 107-129 29-51 (76)
328 TIGR00079 pept_deformyl peptid 24.0 85 0.0018 24.3 2.9 30 14-46 10-39 (161)
329 PF11488 Lge1: Transcriptional 23.9 2.4E+02 0.0052 19.2 6.8 45 88-132 23-67 (80)
330 KOG3366|consensus 23.9 3.8E+02 0.0083 21.5 8.6 78 57-134 13-98 (172)
331 TIGR01149 mtrG N5-methyltetrah 23.8 98 0.0021 21.5 2.8 17 96-112 13-29 (70)
332 PF06013 WXG100: Proteins of 1 23.7 1.9E+02 0.0042 18.0 10.4 29 73-101 6-34 (86)
333 PRK14066 exodeoxyribonuclease 23.6 68 0.0015 22.1 2.1 23 107-129 27-49 (75)
334 PF08580 KAR9: Yeast cortical 23.6 6.6E+02 0.014 24.1 9.9 63 69-135 247-322 (683)
335 PRK10884 SH3 domain-containing 23.6 4E+02 0.0086 21.5 11.1 48 66-116 120-167 (206)
336 PF11944 DUF3461: Protein of u 23.5 1.6E+02 0.0035 22.5 4.2 51 69-119 62-112 (125)
337 PF02601 Exonuc_VII_L: Exonucl 23.4 4.3E+02 0.0092 21.8 12.4 45 18-62 133-177 (319)
338 PHA01750 hypothetical protein 23.4 2.6E+02 0.0057 19.4 7.0 17 33-49 11-27 (75)
339 PF10152 DUF2360: Predicted co 23.3 2.6E+02 0.0057 21.2 5.5 28 108-135 20-47 (148)
340 PF11460 DUF3007: Protein of u 23.2 1.5E+02 0.0033 21.9 3.9 17 100-116 64-80 (104)
341 PF12269 zf-CpG_bind_C: CpG bi 23.2 2.5E+02 0.0054 23.5 5.7 35 101-135 28-62 (236)
342 cd08317 Death_ank Death domain 23.1 2.3E+02 0.005 19.0 4.7 52 73-127 4-57 (84)
343 KOG1760|consensus 23.1 3.6E+02 0.0077 20.8 8.0 23 111-133 101-123 (131)
344 TIGR00513 accA acetyl-CoA carb 22.9 1.8E+02 0.0039 25.3 4.9 43 72-114 4-47 (316)
345 cd04775 HTH_Cfa-like Helix-Tur 22.8 1.8E+02 0.0038 20.3 4.1 26 99-124 75-100 (102)
346 PRK01026 tetrahydromethanopter 22.8 1E+02 0.0022 21.7 2.8 17 96-112 16-32 (77)
347 PF10146 zf-C4H2: Zinc finger- 22.6 4.4E+02 0.0095 21.7 10.9 27 41-67 13-39 (230)
348 PRK12595 bifunctional 3-deoxy- 22.6 90 0.0019 27.2 3.1 32 95-126 4-39 (360)
349 PRK14598 peptide deformylase; 22.6 91 0.002 24.9 2.9 30 14-46 11-40 (187)
350 PF14643 DUF4455: Domain of un 22.5 5.6E+02 0.012 22.9 11.3 69 64-135 327-396 (473)
351 PF08657 DASH_Spc34: DASH comp 22.5 4.7E+02 0.01 21.9 7.6 36 69-104 178-213 (259)
352 PF02996 Prefoldin: Prefoldin 22.4 2.8E+02 0.006 19.3 5.9 28 95-122 91-118 (120)
353 PLN02939 transferase, transfer 22.4 4.8E+02 0.01 26.3 8.2 73 64-136 286-364 (977)
354 PRK12765 flagellar capping pro 22.4 2.1E+02 0.0045 26.7 5.5 52 81-132 535-587 (595)
355 TIGR02047 CadR-PbrR Cd(II)/Pb( 22.2 2.1E+02 0.0045 20.8 4.6 28 100-127 84-111 (127)
356 PRK05771 V-type ATP synthase s 22.2 4.8E+02 0.01 24.1 7.9 30 95-124 100-129 (646)
357 PF08454 RIH_assoc: RyR and IP 22.2 1.9E+02 0.0042 20.9 4.3 39 31-69 64-105 (109)
358 PF08614 ATG16: Autophagy prot 22.0 3.8E+02 0.0083 20.8 9.4 76 48-126 107-183 (194)
359 PF06840 DUF1241: Protein of u 22.0 3.9E+02 0.0085 20.9 6.2 54 70-123 88-141 (154)
360 PF15112 DUF4559: Domain of un 22.0 3.8E+02 0.0082 23.4 6.6 13 27-39 179-191 (307)
361 cd01145 TroA_c Periplasmic bin 21.8 3.8E+02 0.0083 20.7 6.4 39 76-114 117-160 (203)
362 PRK14595 peptide deformylase; 21.7 94 0.002 24.2 2.7 30 14-46 12-41 (162)
363 PF04582 Reo_sigmaC: Reovirus 21.6 3.1E+02 0.0068 24.1 6.1 110 26-137 40-154 (326)
364 PF12443 AKNA: AT-hook-contain 21.6 1.7E+02 0.0036 21.8 3.9 29 110-138 46-74 (106)
365 PF15209 IL31: Interleukin 31 21.6 3.9E+02 0.0085 20.7 6.2 29 95-124 64-92 (137)
366 PRK12765 flagellar capping pro 21.6 6.6E+02 0.014 23.5 8.6 15 120-134 554-568 (595)
367 TIGR03007 pepcterm_ChnLen poly 21.5 5.5E+02 0.012 22.4 11.9 103 26-133 128-235 (498)
368 PF15219 TEX12: Testis-express 21.4 3.4E+02 0.0074 19.9 7.7 12 1-12 1-12 (100)
369 TIGR01612 235kDa-fam reticuloc 21.3 1.1E+03 0.024 26.8 10.8 89 38-129 2304-2394(2757)
370 PF11593 Med3: Mediator comple 21.3 1.7E+02 0.0036 26.3 4.5 49 62-110 55-104 (379)
371 PF11932 DUF3450: Protein of u 21.2 4.4E+02 0.0096 21.2 11.8 46 81-126 73-119 (251)
372 PF05713 MobC: Bacterial mobil 21.2 2.1E+02 0.0045 17.4 4.7 17 76-92 5-21 (48)
373 COG1463 Ttg2C ABC-type transpo 21.2 5.3E+02 0.011 22.0 12.9 42 61-102 181-225 (359)
374 cd01282 HTH_MerR-like_sg3 Heli 21.1 3.1E+02 0.0067 19.4 6.0 27 98-124 84-110 (112)
375 PRK10622 pheA bifunctional cho 21.1 1E+02 0.0022 27.1 3.1 20 95-114 5-24 (386)
376 KOG4025|consensus 21.0 4.3E+02 0.0094 21.6 6.4 22 99-120 121-142 (207)
377 PLN02678 seryl-tRNA synthetase 21.0 4.6E+02 0.0099 23.7 7.3 47 72-118 48-94 (448)
378 PF12848 ABC_tran_2: ABC trans 20.9 2.5E+02 0.0055 18.3 7.4 38 88-125 17-54 (85)
379 PRK08032 fliD flagellar cappin 20.9 6E+02 0.013 22.6 11.0 54 79-132 407-461 (462)
380 CHL00198 accA acetyl-CoA carbo 20.9 1.6E+02 0.0034 25.7 4.1 24 72-95 7-30 (322)
381 COG0242 Def N-formylmethionyl- 20.8 96 0.0021 24.5 2.6 29 14-45 12-40 (168)
382 PRK07342 peptide chain release 20.7 5.3E+02 0.011 22.7 7.4 15 70-84 19-33 (339)
383 PRK06443 chorismate mutase; Va 20.7 1.1E+02 0.0023 24.7 2.9 19 96-114 6-24 (177)
384 PRK11415 hypothetical protein; 20.7 1.9E+02 0.0041 19.6 3.8 33 85-117 7-39 (74)
385 PRK11352 regulator protein Frm 20.6 1.9E+02 0.0041 20.5 3.9 29 99-128 10-38 (91)
386 TIGR02680 conserved hypothetic 20.3 9.5E+02 0.021 24.7 13.5 85 48-133 235-321 (1353)
387 TIGR01069 mutS2 MutS2 family p 20.2 7.9E+02 0.017 23.7 11.5 7 61-67 516-522 (771)
388 PRK09039 hypothetical protein; 20.1 5.7E+02 0.012 22.0 11.8 30 71-100 123-152 (343)
389 COG1937 Uncharacterized protei 20.1 2.4E+02 0.0051 20.1 4.3 32 96-128 7-38 (89)
390 PF12128 DUF3584: Protein of u 20.1 9.1E+02 0.02 24.4 13.2 72 48-119 357-430 (1201)
No 1
>KOG4559|consensus
Probab=100.00 E-value=1.2e-36 Score=222.85 Aligned_cols=118 Identities=43% Similarity=0.696 Sum_probs=114.4
Q ss_pred ccccccCccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy8909 7 NSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNS 86 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~ 86 (138)
.+++.+||||| |.|+|+++..|+|+|++||..||.|+.+|+++||++..+||+|||.||++++.||.+|+++|..+..+
T Consensus 2 ~d~~e~a~Tls-Sa~~~~a~~~~~PhirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k 80 (120)
T KOG4559|consen 2 ADINEHAPTLS-SAPPFEALPAHDPHIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGK 80 (120)
T ss_pred CCccccCCccc-CCCCCcCCCCCCccHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36788999998 55789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
+..|++||+.|.||++|||.|++++++||+++++||.|+
T Consensus 81 ~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld~Y~ 119 (120)
T KOG4559|consen 81 LDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLDAYS 119 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999997
No 2
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=100.00 E-value=1.7e-36 Score=218.11 Aligned_cols=99 Identities=48% Similarity=0.791 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 37 ATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 37 a~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
|++||++++.||+||+++|.+||+|||+||++++.||.+|+++++++++++++|+++|++|+||++|||+||++|++||+
T Consensus 1 ~~~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 1 AERMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8909 117 AAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 117 ~a~~LD~ysk~LE~K~k~l 135 (138)
+|++||+||++||+|||+|
T Consensus 81 ~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 81 TVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975
No 3
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=96.50 E-value=0.22 Score=38.74 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8909 31 PRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS 110 (138)
Q Consensus 31 ~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~ 110 (138)
..+.+..+.++.++..-|++=...|.+.++....-....-.--+.--...-.+=..+++|++....+...-+||.+|...
T Consensus 62 ~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~ 141 (149)
T PF10157_consen 62 QAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKL 141 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888666777777666665554443322222223334466777777777777888888888888
Q ss_pred HHHHHHH
Q psy8909 111 VLKLEQA 117 (138)
Q Consensus 111 V~~LE~~ 117 (138)
|+.||.+
T Consensus 142 lD~lE~~ 148 (149)
T PF10157_consen 142 LDLLESL 148 (149)
T ss_pred HHHHHhc
Confidence 8888764
No 4
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=95.28 E-value=0.84 Score=34.58 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=63.5
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQR 93 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~k 93 (138)
..|-.|++||-+.+ +.=|.+++..-..+|+-|+++ -..+|...++.+..+...+..+.+.
T Consensus 8 ~~lllss~sfaA~~-----------------~~~v~~~l~~LEae~q~L~~k---E~~r~~~~k~~ae~a~~~L~~~~~~ 67 (126)
T PF09403_consen 8 GMLLLSSISFAATA-----------------TASVESELNQLEAEYQQLEQK---EEARYNEEKQEAEAAEAELAELKEL 67 (126)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc-----------------chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887733 344556677777888777664 5678999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 94 YKQLIPQLEQIDQIYDS---VLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~---V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
|++...-+..|-+..+- =.+.-.++.+-+.|-+.|+.+++.-+
T Consensus 68 ~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 68 YAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777777655332 13455566666666666666665544
No 5
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.63 E-value=4.2 Score=32.10 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHhhhhHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909 40 MFKKTADYLIGELNSTQADY----EVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY 94 (138)
Q Consensus 40 mf~kvs~yl~~El~~t~~dy----~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky 94 (138)
+|+.+..++.|.++...+.+ .+|+..=+-+...+.+.+..+..+...-..++.++
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~ 60 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKL 60 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444332 34444444444444444444444444444443333
No 6
>PRK10698 phage shock protein PspA; Provisional
Probab=91.67 E-value=6.3 Score=32.01 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
|-.+|..++.++...+..+.+|-.-..+|+.|+..+..
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888888888888888877654
No 7
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=89.09 E-value=6.5 Score=35.89 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHH
Q psy8909 20 TSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIP 99 (138)
Q Consensus 20 ~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p 99 (138)
.+...|..|.||++.++..-+- |-+|.+-=.+| -|..=-.....+...+...-.-+..+++.=.|-.++|+.
T Consensus 96 ~~pt~~w~~ddpDi~~~l~gvn---SGLvrAKDSIt-----SlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEg 167 (558)
T PF15358_consen 96 ASPTPPWAPDDPDITELLEGVN---SGLVRAKDSIT-----SLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEG 167 (558)
T ss_pred CCCCCCCCCCCccHHHHHhhhc---ccceecccchh-----hHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHH
Confidence 3445667778888877654321 12222222222 222223445566777777778888888888888889999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 100 QLEQID----QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 100 yl~qID----~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
|..|+. .+..+|..-|.-++.|-+-+-.||.|++-|++
T Consensus 168 yCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~ 209 (558)
T PF15358_consen 168 YCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQ 209 (558)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 988875 47888888999999999999999999998764
No 8
>KOG0980|consensus
Probab=88.33 E-value=12 Score=36.91 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 54 STQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQ----LEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 54 ~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~py----l~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.+..-++=+++++...-.+|.+++..-..+...=.+|-.||...... -+-||+.++....|...+-+++.-..++|
T Consensus 407 ka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~ 486 (980)
T KOG0980|consen 407 KAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE 486 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333566788888888999999999999998888888888875544 35678888888888888888877777777
Q ss_pred HHHHhh
Q psy8909 130 AKFKQL 135 (138)
Q Consensus 130 ~K~k~l 135 (138)
.|....
T Consensus 487 ~K~e~~ 492 (980)
T KOG0980|consen 487 TKTESQ 492 (980)
T ss_pred HhhHHH
Confidence 666543
No 9
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=87.41 E-value=2.9 Score=29.44 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 40 MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 40 mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
||.++-..+. .++.+.++.++|=+|-+..-.-|.-++.-.-++-..+.- .-.-||+++|.+|-+.++
T Consensus 1 MFEkid~I~k-~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~~------------~~~~QideeV~~LKe~Id 67 (79)
T PF10398_consen 1 MFEKIDLILK-NIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLNM------------AFLAQIDEEVEKLKEHID 67 (79)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-H------------HHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCcccccH------------HHHHHHHHHHHHHHHHHH
Confidence 6888766654 688999999999999999999999988766555444332 224467789999999999
Q ss_pred HHHHHHHHH
Q psy8909 120 KLDHYAKRL 128 (138)
Q Consensus 120 ~LD~ysk~L 128 (138)
.|..|-+++
T Consensus 68 aLNK~KkE~ 76 (79)
T PF10398_consen 68 ALNKIKKEL 76 (79)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999887653
No 10
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.64 E-value=15 Score=29.43 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..|-.++..++.++..+...|..|..-...|+.++..+.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888888888888888888888877664
No 11
>PRK11637 AmiB activator; Provisional
Probab=86.21 E-value=22 Score=31.00 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHH---HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 58 DYEVLEKMNNAT---ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ----IDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 58 dy~LLEnmN~~~---s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q----ID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
|.++|+.+.... .....++......+.....+++.+...|..-.++ ++.++.+....++.+.+|..-.++|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444322 2333334444444444444444444444443333 556666666666666666666666666
Q ss_pred HHHhhh
Q psy8909 131 KFKQLE 136 (138)
Q Consensus 131 K~k~le 136 (138)
.+++++
T Consensus 248 ~I~~l~ 253 (428)
T PRK11637 248 SIARAE 253 (428)
T ss_pred HHHHHH
Confidence 665543
No 12
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=85.72 E-value=6.7 Score=29.75 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
..|.+-+.+|+.+++.+.+.|.....--.|.++||.+.+.+++
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999999999999999999999999888764
No 13
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.65 E-value=24 Score=32.49 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=6.6
Q ss_pred HhHHHHHHHHHHhHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQN 91 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln 91 (138)
.++.+....+...+..++
T Consensus 394 ~~~~~~~~~~e~el~~l~ 411 (650)
T TIGR03185 394 SQLLKELRELEEELAEVD 411 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 14
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=84.50 E-value=11 Score=25.89 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=30.2
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
==.+..+.......-.++.+.|-+.+.|.++.+.++.+.|..|.
T Consensus 45 i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 45 ITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666667777777777777777777777777664
No 15
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=84.44 E-value=2.3 Score=37.05 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
.-..|+++|+.|+.||+-+..+..-.+.++.+++.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~ 176 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKK 176 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566666666666666666555555444444443
No 16
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=84.17 E-value=4.3 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 78 QITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 78 ~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
+.+.-+..-+++++.|+..+ ...+.+||+...+|..||+.+..|
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455666677888888774 456888999999999999887765
No 17
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.58 E-value=27 Score=29.89 Aligned_cols=89 Identities=10% Similarity=0.221 Sum_probs=40.6
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHH---------------HHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEE---------------QNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~---------------Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
|+.+-..-..+..++..+=-....+|..+...+..+...... |.....++....++|.++++++.
T Consensus 156 l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555444444333322 22333334444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 113 KLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.++..+...-.=..++...+.+++
T Consensus 236 ~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 236 ELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444433
No 18
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=82.25 E-value=5.8 Score=26.59 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..+|.+++.+..||..-..+|.-.+.+..++++++
T Consensus 13 ~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 13 TKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555543
No 19
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=82.21 E-value=26 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
|..-+..|..++..|..|+..|+.=+
T Consensus 257 l~~~l~~l~~~~~~l~~~~~~l~~~l 282 (291)
T TIGR00996 257 LPQALANLAPVLTLLVDYHPELEQLL 282 (291)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34444445555555555555555433
No 20
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=81.78 E-value=15 Score=32.24 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=61.8
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
|.-++++-.++.++|++||+--.....++.+.+..|+..+-.=-.--+..+.|-.||-++-+.-..||-=..+
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELAR 84 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELAR 84 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988888877777777788999999999998888888864433
No 21
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=81.67 E-value=5.5 Score=27.64 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
.-.+.++......|+.|....+.++..+.+|+.+|..-|+-+..|.......-.-+..+
T Consensus 20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 20 PLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467788888889999999999999999999999999998888888776665544443
No 22
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=81.21 E-value=5.3 Score=34.79 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 96 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.+...=+.|..+|+.+..+++.+..+....+.|+.++..++-
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555678889999999999998888888888888888764
No 23
>PRK11637 AmiB activator; Provisional
Probab=81.06 E-value=37 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=10.6
Q ss_pred ccCccccccCCcccCC
Q psy8909 11 NKMTSLSTSTSSFEPM 26 (138)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (138)
+||...-|-|-++.|-
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (428)
T PRK11637 1 MRGKAINTMTRAVKPR 16 (428)
T ss_pred CCCcccccccccccch
Confidence 4666677777776663
No 24
>PRK10807 paraquat-inducible protein B; Provisional
Probab=80.34 E-value=32 Score=31.61 Aligned_cols=102 Identities=15% Similarity=0.279 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHH----HhhHhhhhHHHH-HHHHHHHHHHHH-----HhHhHHHHHHHHHHhHHHHHHHHHhhHHH
Q psy8909 31 PRLNELATNMFKKTADY----LIGELNSTQADY-EVLEKMNNATIT-----KYSDMKQITVNISNSIEEQNQRYKQLIPQ 100 (138)
Q Consensus 31 ~~l~~la~~mf~kvs~y----l~~El~~t~~dy-~LLEnmN~~~s~-----kY~~m~~~a~~l~~~~~~Ln~ky~~l~py 100 (138)
..|.+-+..++.++.+. +-++++++..+. +++++++..... -=..+.....++...+..++...+.++|-
T Consensus 416 ~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~ 495 (547)
T PRK10807 416 AQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPG 495 (547)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34555555566665555 223344444443 244455544411 11344455577788888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
.....++.+.+.+|.+++..|..-+..|+.+=
T Consensus 496 s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P 527 (547)
T PRK10807 496 SPAYNKMVADMQRLDQVLRELQPVLKTLNEKS 527 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 77788888888899999999988888887653
No 25
>KOG0804|consensus
Probab=80.11 E-value=49 Score=30.45 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=54.9
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy8909 42 KKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV 111 (138)
Q Consensus 42 ~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V 111 (138)
+.++.|.+++++.-..-|+++-.--+.....-.++...-..+++.+.+++.|.+.++.-++-+.++++.+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999898887766666777778888888888888888888888777777666555443
No 26
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=80.06 E-value=11 Score=30.49 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8909 61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLE----QIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~----qID~Ie~~V~~LE~~a~~LD~ 123 (138)
.|++||--+..--..+...+.+|+..+..+...+..+-.++. |=-.....|++||+=+..||.
T Consensus 62 YLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~ 128 (189)
T TIGR02132 62 YLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK 128 (189)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence 466666666666666777778888888888777666555555 555666777777776655544
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.79 E-value=31 Score=27.91 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHH
Q psy8909 52 LNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQL 101 (138)
Q Consensus 52 l~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl 101 (138)
+...-.-++-|++-+.....+...+..-+..+...+.+...+|.+...-+
T Consensus 73 ~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl 122 (237)
T PF00261_consen 73 ADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL 122 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677777777777777777777777777777777777665444
No 28
>PRK09039 hypothetical protein; Validated
Probab=79.52 E-value=40 Score=29.07 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=59.6
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q psy8909 46 DYLIGELNSTQADYEVLEKMNNATITKYS-------DMKQITVNISNSIEEQNQRYKQLIP----QLEQIDQIYDSVLKL 114 (138)
Q Consensus 46 ~yl~~El~~t~~dy~LLEnmN~~~s~kY~-------~m~~~a~~l~~~~~~Ln~ky~~l~p----yl~qID~Ie~~V~~L 114 (138)
.=++.++..-..+|.-++........-|. .+..-+..+...+...+..|.+-.| .-+||..+..|+..|
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555554444444333 5556677777777777777776544 446788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 115 EQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 115 E~~a~~LD~ysk~LE~K~k~le~ 137 (138)
|........-.+....++..+++
T Consensus 157 e~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 157 EAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777766654
No 29
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=78.33 E-value=31 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 114 LEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 114 LE~~a~~LD~ysk~LE~K~k~le 136 (138)
|.+-...+..+.+.||.|+.+|+
T Consensus 366 ~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 366 FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 44455566677777777776653
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.03 E-value=43 Score=27.06 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=34.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ----LIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~----l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
+.++|..+-.-...++ .+...+..-...+..+++.|...-.. ...|=.+|..+..++...|.-+.....
T Consensus 125 ~E~~Le~aEeR~e~~E-------~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~ 197 (237)
T PF00261_consen 125 LEQELERAEERAEAAE-------SKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER 197 (237)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444444 44444444444444444444322221 233334444444444444444444444
Q ss_pred HHHHHHHHHHhh
Q psy8909 124 YAKRLEAKFKQL 135 (138)
Q Consensus 124 ysk~LE~K~k~l 135 (138)
-+..||..+..|
T Consensus 198 ~v~~Le~~id~l 209 (237)
T PF00261_consen 198 RVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 31
>PRK14011 prefoldin subunit alpha; Provisional
Probab=74.99 E-value=16 Score=28.09 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 88 EEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 88 ~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+.|+++...|+.|-+||..+..++..|..+..+++.-...|+
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999988877776
No 32
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=74.98 E-value=29 Score=27.95 Aligned_cols=108 Identities=14% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHH-------hhHhhhhHHHH----HH-HHHHHHHHHHHhHhHHHHHHH------------
Q psy8909 27 ISHDPRLNELATNMFKKTADYL-------IGELNSTQADY----EV-LEKMNNATITKYSDMKQITVN------------ 82 (138)
Q Consensus 27 ~~~~~~l~~la~~mf~kvs~yl-------~~El~~t~~dy----~L-LEnmN~~~s~kY~~m~~~a~~------------ 82 (138)
...|+.++.+.+.+-..++.-+ =+++-.+.... .+ =.+++.+....+..+...-.+
T Consensus 91 L~gds~l~~i~~~L~~~~~~~~~~~~~~sL~~iGI~~~~~~G~L~iD~~kl~~Al~~np~~V~~lF~~~~~~~~~~~~~~ 170 (239)
T PF07195_consen 91 LAGDSTLRSIRSQLRSALSSSVGSGNYNSLSDIGISTDRDNGTLSIDETKLDKALAENPDAVQALFAGDGTKDGTVYSTS 170 (239)
T ss_pred ccCcHHHHHHHHHHHHHhhccCCCccccCHHHcCeeecCCCCeEEEeHHHHHHHHhhCHHHHHHHHccCccccccccccc
Confidence 3467777777776666665500 01222222111 00 134555666666666666332
Q ss_pred -HHHhHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 83 -ISNSIEEQNQRYKQ---------LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 83 -l~~~~~~Ln~ky~~---------l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+...+.++=..|-. ...+=.+|+.|++++..+|. +|+.+-.+|..+|-+|+.
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~ 232 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMES 232 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34433333222222 23344556666666666554 577777888888888764
No 33
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.81 E-value=22 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..+.|..||..+..++..+..|+.-...+|.+.+++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~ 40 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666555543
No 34
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.71 E-value=36 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
...|..+..-..++.....+++.. +...-+.|+.++.++..++.+-..|.
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~---v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQ---VASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444322 22333445555555555554433333
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.54 E-value=61 Score=28.62 Aligned_cols=62 Identities=10% Similarity=0.273 Sum_probs=34.9
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+|.++......+...+...+ ..+....+.+..++..|..||..+..+..=-++|+.+++++.
T Consensus 331 ~~~~~~~~i~el~~~i~~~~---~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNK---QSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 34444444444444433333 335556666677777777777776666555666666665543
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.11 E-value=56 Score=28.02 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHhhhhHHHH--HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHH
Q psy8909 29 HDPRLNELATNMFKKTADYLIGELNSTQADY--EVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYK 95 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~El~~t~~dy--~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~ 95 (138)
.+|+.+.+...=|..|-.|-..+--+.==+| +|++.+=..--.++..|..-..-|.+..+.++.-+.
T Consensus 107 a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~ 175 (312)
T smart00787 107 ASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKP 175 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887666554443332 356666666666666666555555555555543333
No 37
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=74.06 E-value=48 Score=28.81 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
..-+..++..=+.....|++-+++|++++.++.+++.-|..+-.
T Consensus 259 l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~ 302 (307)
T PF15112_consen 259 LEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKS 302 (307)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHh
Confidence 33444444444556667888889999999998888887766544
No 38
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=73.97 E-value=48 Score=27.16 Aligned_cols=86 Identities=10% Similarity=0.188 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Q psy8909 38 TNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 38 ~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE~ 116 (138)
..++...+.++.. ++++. +-|..||. +...-.+..+....+.+.++.||.-|+- |+.--+|+..+++-+..-++
T Consensus 102 ~~l~esl~~~i~~-~~~aa---~~i~~~~~-~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~ 176 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAA---KTLAPMTD-SYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSS 176 (202)
T ss_pred HHHHHHHHHHHHH-HHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666664 33332 23555555 3333346777888888999999988876 55444444444444333333
Q ss_pred HHHHHHHHHHHH
Q psy8909 117 AAYKLDHYAKRL 128 (138)
Q Consensus 117 ~a~~LD~ysk~L 128 (138)
.=.++..-++.|
T Consensus 177 fkeQ~~kLa~NL 188 (202)
T TIGR03513 177 LKEEMEKMAANL 188 (202)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 39
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.68 E-value=37 Score=25.78 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 45 ADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ----RYKQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 45 s~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~----ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
-.-++.++..+...+.-....-......-. .+.++.+.+..|.+ -...|.+-..++.+++.....+|--|..
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666666666665544433332222222 22244444444443 3344666677777777788888888877
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy8909 121 LDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 121 LD~ysk~LE~K~k~le~ 137 (138)
|+.-.-.+|.|+..++.
T Consensus 120 le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEE 136 (143)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777776654
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=73.59 E-value=80 Score=29.59 Aligned_cols=10 Identities=0% Similarity=0.222 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy8909 32 RLNELATNMF 41 (138)
Q Consensus 32 ~l~~la~~mf 41 (138)
...++..++|
T Consensus 146 ~r~~~~~~~~ 155 (880)
T PRK03918 146 SREKVVRQIL 155 (880)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 41
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=73.44 E-value=41 Score=31.57 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHH-------HHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH
Q psy8909 26 MISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMN-------NATITKYSDMKQITVNISNSIEEQNQRYKQLI 98 (138)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN-------~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~ 98 (138)
.++.||--++....=|-.++.+|++++.--..++.++..-| +..-.+|-++...-..+...+.--.+....++
T Consensus 272 ~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~ 351 (582)
T COG5158 272 SDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQLRHKENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVE 351 (582)
T ss_pred CCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999655 55667777888888888888888888888877
Q ss_pred H-HHHHHHHHHHHHHHHHHH
Q psy8909 99 P-QLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 99 p-yl~qID~Ie~~V~~LE~~ 117 (138)
. |++.+-+||+.+......
T Consensus 352 ~~~l~~f~eIEq~l~~~~~~ 371 (582)
T COG5158 352 ERYLDDFSEIEQNLSTGNDV 371 (582)
T ss_pred HHHHHHHHHHHHhhhcCCcc
Confidence 5 899999999988877643
No 42
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=73.01 E-value=28 Score=24.07 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..+..+..++...+.+++-.|.+|+.-+++||.-- ....=+.++..|+.-.++||.|=..+-
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~-~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSL-GRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888887788877744 445567788888888888888866553
No 43
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.49 E-value=64 Score=27.95 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 78 QITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 78 ~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
.++=.|-.=+..|+..-.....+.+.|..||.....|...+...+.=...++.+|+
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566666666666677777777776666655555544444444443
No 44
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=71.92 E-value=88 Score=29.51 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH--
Q psy8909 35 ELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVL-- 112 (138)
Q Consensus 35 ~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~-- 112 (138)
+-+..+|..+|+-++.-|.++.+.-+.|+..|+ ||..-.+.+.+..+.+..|+.+++.++|---+||+-+..|+
T Consensus 116 ~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~----~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~a 191 (593)
T PRK15374 116 ESQKEMGIQVSKEFQTALGEAQEATDLYEASIK----KTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQA 191 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Confidence 345667788888888888888888888888765 68888899999999999999999999888888887766654
Q ss_pred --HHHHHHHHHHHHHHHH
Q psy8909 113 --KLEQAAYKLDHYAKRL 128 (138)
Q Consensus 113 --~LE~~a~~LD~ysk~L 128 (138)
.+..+-...|+|+..-
T Consensus 192 ~~~a~~a~~~~~~~v~a~ 209 (593)
T PRK15374 192 GKEATEAKEALDKATDAT 209 (593)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3555666667776554
No 45
>KOG0250|consensus
Probab=71.83 E-value=1.2e+02 Score=30.72 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHH
Q psy8909 32 RLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI-DQIYDS 110 (138)
Q Consensus 32 ~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI-D~Ie~~ 110 (138)
+++.+.++.-...++|+=+.+..-.-+|+.++.-..-.-.+-..+.+.+.........+.+++.+++.-++.+ |..+.+
T Consensus 256 ~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 256 QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 4555666666777888888888888999999998888888888888888888888888888888888777654 667777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8909 111 VLKLEQAAYKLDHYAK 126 (138)
Q Consensus 111 V~~LE~~a~~LD~ysk 126 (138)
=.+++.+...||.+-+
T Consensus 336 d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRR 351 (1074)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888888888888876
No 46
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=71.57 E-value=18 Score=26.79 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy8909 86 SIEEQNQRYKQLIPQLEQIDQIYDSV 111 (138)
Q Consensus 86 ~~~~Ln~ky~~l~pyl~qID~Ie~~V 111 (138)
.+.+|+++|..|..+|+.+-+|..+|
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888
No 47
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=71.15 E-value=40 Score=25.05 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
...+|..++.=|..-+.+-.............+..-..++.-++.+...+-+| .-++.|.+.+|..++.++
T Consensus 35 ~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi----GDveNWa~~iE~Dl~~i~ 105 (121)
T PF06320_consen 35 VDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI----GDVENWAEMIERDLRVIE 105 (121)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHH
Confidence 34456666666665555443333333333333333444555555555555544 456778888887777664
No 48
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.11 E-value=58 Score=26.87 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=39.3
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
...+.+...-|....+..+.+-.+-..+++.|.+|...+..||.++.....=-.+....+.
T Consensus 24 ~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 24 VESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555666677788888888888999999888776655544444433
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.78 E-value=97 Score=31.19 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=34.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
|++++......++-|.+=+......+..+.+-...|...+..+..+-..+..-+++..+++.++.+|..-...+..=.+
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555544444444444444444444444444444444444444444444444444444444333333333
No 50
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=69.47 E-value=20 Score=27.19 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHH--HHHHHHHHHh
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK--------LDHY--AKRLEAKFKQ 134 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~--------LD~y--sk~LE~K~k~ 134 (138)
.+++..|++-++.+...-.-+...+.+++.-+...+.||.+|.+ +|.. +|+|+.-+++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 34445555555555555555555555555555556666666544 4554 5666665554
No 51
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=69.30 E-value=38 Score=24.03 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIY-------DSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie-------~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
...|.=+...=.........+...-..+...++++++.. ++|..+|+-|..|+.=+.+|..-.+.||
T Consensus 20 ~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 20 NEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433322 3334444444444444445554444444
No 52
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.29 E-value=1.1e+02 Score=29.26 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 55 TQADYEVLEKMNNATITKYSD-MKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~kY~~-m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
+.+=++||-+-=+.-..+|.. .......|.+.+..|+.++ +..++.|+++.+....|.+.+.+|..--.++..+-+
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~---e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQK---EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666743 4444556666666666443 466777777777777776666666665555555555
Q ss_pred hhhh
Q psy8909 134 QLEK 137 (138)
Q Consensus 134 ~le~ 137 (138)
.|.+
T Consensus 611 ~L~~ 614 (717)
T PF10168_consen 611 KLMK 614 (717)
T ss_pred HHHH
Confidence 4444
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.80 E-value=66 Score=26.24 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.+..+-|...+.+|+..+..++..++.=+.+++.+..|=..++.|.+-.+.|=+.-+.+++
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666666666666666666666666655555555554443
No 54
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.13 E-value=70 Score=26.27 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhHhhhhHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh
Q psy8909 40 MFKKTADYLIGELNSTQAD----YEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQL 97 (138)
Q Consensus 40 mf~kvs~yl~~El~~t~~d----y~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l 97 (138)
+|+++.+|+.+.++...+- -++|+..=+.+-..+.+.++.+..+-..-..+..+|+.+
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666544332 245555555555555555555555555555555444443
No 55
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.89 E-value=21 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+.+-|..-..-+.+|-.-.+.|..|++.+
T Consensus 23 Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 23 LNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444443
No 56
>PHA03395 p10 fibrous body protein; Provisional
Probab=66.51 E-value=24 Score=25.42 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 67 NATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
++...|...+.+-..+++.++.++-+..+.|...-.+++.|...|+.+..
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~d 63 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITD 63 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666555555555555555555555555555443
No 57
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=66.29 E-value=64 Score=28.82 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHh-------hHhhhhHH-H---HHHH-HHHHHHHHHHhHhHHHHHH------HHHHhHHH
Q psy8909 28 SHDPRLNELATNMFKKTADYLI-------GELNSTQA-D---YEVL-EKMNNATITKYSDMKQITV------NISNSIEE 89 (138)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~yl~-------~El~~t~~-d---y~LL-EnmN~~~s~kY~~m~~~a~------~l~~~~~~ 89 (138)
..|..++.+...|-..++.-+. +++-.+.. . +.|= .+++.+...++......-. |+...+.+
T Consensus 313 ~gDs~l~~i~~~Lr~~~~~~~~~~~~~~L~~iGI~~~~~~G~L~lD~~kl~~al~~np~~V~~lF~~~~~~~G~~~~l~~ 392 (462)
T PRK08032 313 LGDSTLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIAT 392 (462)
T ss_pred cCcHHHHHHHHHHHHHHhcccCCcccccHHHcCeeccCCCCeEEEcHHHHHHHHHHCHHHHHHHhCCCCCCCcHHHHHHH
Confidence 3566777777666666554332 22222222 0 0010 2456666666666554432 33333332
Q ss_pred HHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 90 QNQRYK--------QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 90 Ln~ky~--------~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+=..|- .-..|-.+|+.|++++..|+. +|+.+-.+|..+|-+||.
T Consensus 393 ~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~ 445 (462)
T PRK08032 393 NLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDK 445 (462)
T ss_pred HHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 211111 113455667777777766665 566666777777777763
No 58
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=65.84 E-value=62 Score=26.39 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQL-EQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl-~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.||..++. +......+..+-..++.-+ ++.++-+.++..+.+-...++--.+.|+
T Consensus 72 ~KY~~LK~----~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 72 SKYQELKK----SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred HHHHHHHH----HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 2233333444444443333 4444455555555544444444444443
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.58 E-value=59 Score=24.84 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
......++....+.+.+....+..+...+..+..-...|+.++.+.+
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333467777778888888888888777777777766654
No 60
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=65.54 E-value=62 Score=25.14 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=46.9
Q ss_pred HHHHHHHhhHhhhhHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 42 KKTADYLIGELNSTQADY-EVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 42 ~kvs~yl~~El~~t~~dy-~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
.++-+-|++|+++..-+- .||.+-|+ -.+++|.|-+.++|.+.-+-++-++|..|=+.+..
T Consensus 37 akt~~~l~~qv~gi~~eT~~Ll~K~N~------------------L~eDvq~Kv~tld~vf~aV~dl~~SV~~ln~s~r~ 98 (139)
T COG4768 37 AKTLKGLTSQVDGITHETEELLHKTNT------------------LAEDVQGKVATLDPVFDAVKDLGQSVSDLNQSVRH 98 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777877765443 45666665 45788889999999999999999999888887766
Q ss_pred HHH
Q psy8909 121 LDH 123 (138)
Q Consensus 121 LD~ 123 (138)
+-.
T Consensus 99 ~~~ 101 (139)
T COG4768 99 LAT 101 (139)
T ss_pred HHH
Confidence 543
No 61
>PRK03918 chromosome segregation protein; Provisional
Probab=65.44 E-value=1.2e+02 Score=28.42 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
||.+++..++..+..+++-+..|....+.++.+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~ 336 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEK 336 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333333333333333
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.15 E-value=85 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=17.5
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy8909 47 YLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNIS 84 (138)
Q Consensus 47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~ 84 (138)
-|+.+..........+..+-.....+|..+...+..+.
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 63
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.44 E-value=59 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.-++++++++..||-=+..|..--+.|+.+|++|+.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777777777777777653
No 64
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=19 Score=27.15 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH------H------HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS------V------LKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~------V------~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
...+|..+.+-+..+...-..+...-.+...-+..|+.|++. | ..-+.++..|+.---.||.+++.++
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444432 1 1334555666666666777777666
Q ss_pred h
Q psy8909 137 K 137 (138)
Q Consensus 137 ~ 137 (138)
+
T Consensus 91 k 91 (119)
T COG1382 91 K 91 (119)
T ss_pred H
Confidence 5
No 65
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=64.30 E-value=57 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
++-+++..+|..|.+-+..||.-++.+=.++...+
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777777777777777777777666665554
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=64.27 E-value=1.9e+02 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Q psy8909 68 ATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ 106 (138)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~ 106 (138)
.+..+...+.++...|...++.|+...+....|+....+
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888887777777665443
No 67
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.17 E-value=73 Score=25.44 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDHYA-KRLEAKFKQLEK 137 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ys-k~LE~K~k~le~ 137 (138)
..-+..++.|++.|..+|.-+...+.++ .-|+.+|..+++
T Consensus 162 ~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~ 202 (219)
T TIGR02977 162 DEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEA 202 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcC
Confidence 3445677889999999998887776442 338888888764
No 68
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=63.24 E-value=27 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+|+-|+..+.+-..=+..++...|.||.+.+.+|
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666667777777777666554
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.04 E-value=94 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhH
Q psy8909 29 HDPRLNELATNMFKKTADYLIGE 51 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~E 51 (138)
.+|+.+.+...-|..|-.|-..+
T Consensus 112 a~~d~r~~m~~q~~~vK~~aRl~ 134 (325)
T PF08317_consen 112 ADPDMRLLMDNQFQLVKTYARLE 134 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777776665544
No 70
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.38 E-value=1.2e+02 Score=27.34 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhHhhhh-HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHH--hhHHHHHHHHHHHHHH
Q psy8909 35 ELATNMFKKTADYLIGELNST-QADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYK--QLIPQLEQIDQIYDSV 111 (138)
Q Consensus 35 ~la~~mf~kvs~yl~~El~~t-~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--~l~pyl~qID~Ie~~V 111 (138)
.....++.++..+-.+-++++ ....-.++.....-+.....+-..+.+|...+++|..--. ..+|-.+|+..+-..+
T Consensus 176 ~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi 255 (424)
T PF03915_consen 176 ESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDI 255 (424)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 334445555555444333333 3344555555555555555555555555555555554332 3678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 112 LKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 112 ~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
..+...+..|-.|.+.+.--+|+
T Consensus 256 ~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 256 SRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHH
Confidence 88888888777766655444443
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=61.38 E-value=1.1e+02 Score=28.07 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=34.7
Q ss_pred hHhhhhHHHHH-HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy8909 50 GELNSTQADYE-VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYD 109 (138)
Q Consensus 50 ~El~~t~~dy~-LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~ 109 (138)
.++.....+++ +.+.+|..... |..+.+....+...++.++....++...++.+-..|.
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~-ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~ 414 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIA-YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL 414 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 44555555555 7777777777776666666666666666555544443
No 72
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=37 Score=26.27 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=42.6
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+..+|+...-.=....+.+..+=++|+.|++...+|++...+|+.+.-+|+.....+.
T Consensus 78 viV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 78 VIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred EEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333445667888889999999999999999999999999988877664
No 73
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=60.08 E-value=56 Score=22.80 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.2
Q ss_pred HHHhHHHHHHHHH
Q psy8909 83 ISNSIEEQNQRYK 95 (138)
Q Consensus 83 l~~~~~~Ln~ky~ 95 (138)
|+..++.+.+|-.
T Consensus 9 Ir~dIk~vd~KVd 21 (75)
T PF05531_consen 9 IRQDIKAVDDKVD 21 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 74
>KOG0804|consensus
Probab=60.06 E-value=87 Score=28.90 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=16.2
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
+...|......+.++.....++...-..+..-++|
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q 386 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ 386 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33445555555555544444444444444333333
No 75
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=59.85 E-value=23 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 68 ATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
.+=.+|..|.+....|...+.+|+.....-...++++.+||.++.
T Consensus 7 ~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~g 51 (78)
T PF08656_consen 7 EVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIG 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 345689999999999999999997666667788999999998875
No 76
>KOG1853|consensus
Probab=59.19 E-value=1.2e+02 Score=26.31 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=46.7
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
|..=|.=++++|+.-..+ |+.=|+-.-..-.. +....+.++.|.+. --.+-+|+.++++..+.+-++-.
T Consensus 39 FQegSrE~EaelesqL~q---~etrnrdl~t~nqr-------l~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aike 108 (333)
T KOG1853|consen 39 FQEGSREIEAELESQLDQ---LETRNRDLETRNQR-------LTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKE 108 (333)
T ss_pred HhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555565544333 33334333332222 23333344444433 33455777778888888877888
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8909 120 KLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~le 136 (138)
.|-.|..+||..-..||
T Consensus 109 ql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 109 QLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHhccHHH
Confidence 88888888776544444
No 77
>KOG0933|consensus
Probab=59.04 E-value=1.9e+02 Score=29.46 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=43.3
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 47 YLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY--KQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky--~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
-++.|++.....++.|++ ++.||.+|++-..-.-..+.-+..+- .++...+.-++.|.+.|.++++-+...+.-
T Consensus 688 ~~q~el~~le~eL~~le~----~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~ 763 (1174)
T KOG0933|consen 688 AIQKELEALERELKSLEA----QSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERA 763 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777765 44566666554443333332222221 224444444445555555555555555544
Q ss_pred HHHHHHHHHhhh
Q psy8909 125 AKRLEAKFKQLE 136 (138)
Q Consensus 125 sk~LE~K~k~le 136 (138)
.+.-+.+++.+|
T Consensus 764 ~k~~~~~i~~lE 775 (1174)
T KOG0933|consen 764 LKKCEDKISTLE 775 (1174)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 78
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=58.36 E-value=56 Score=22.24 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 64 KMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 64 nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
.+|.....-=.++..+...+..-+...|..-+..+..++.+|.+=+.|..+...+..|
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444445555555555555544444443
No 79
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=57.57 E-value=81 Score=23.85 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=40.3
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
..+-+++......+...+.+=+.++..+.+.+.+|+++..+++++-...
T Consensus 55 ~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL 103 (131)
T PF10158_consen 55 AKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLL 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888889999999999999999999888755443
No 80
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.36 E-value=65 Score=22.68 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy8909 105 DQIYDSVLKL 114 (138)
Q Consensus 105 D~Ie~~V~~L 114 (138)
++++..|..|
T Consensus 35 ~~~e~ei~~l 44 (89)
T PF13747_consen 35 DELEEEIQRL 44 (89)
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 81
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.34 E-value=98 Score=24.72 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=11.2
Q ss_pred cccCCCCCchHHHHHH
Q psy8909 22 SFEPMISHDPRLNELA 37 (138)
Q Consensus 22 ~~~~~~~~~~~l~~la 37 (138)
-|.|+.-+.|++++-.
T Consensus 29 HF~pL~~~~e~~REg~ 44 (190)
T PF05266_consen 29 HFSPLQEFKEELREGM 44 (190)
T ss_pred CChhhhcCcHHhhhHH
Confidence 5777777777777643
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.14 E-value=1.2e+02 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.|..|+...+.||..-.+|-.-...|+.||..|+
T Consensus 171 rlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 171 RLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 4445555666666666555544455566655554
No 83
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=56.92 E-value=56 Score=22.91 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
+.+++++|.++.+.+.++.++=++..+.-....+|+.|
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~Y 39 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDY 39 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555555555555555554
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.91 E-value=1.1e+02 Score=27.74 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
.|..|+.++.+.+.-.++++.--..++.+++.+
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 85
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.75 E-value=1.3e+02 Score=25.82 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q psy8909 61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI 104 (138)
Q Consensus 61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI 104 (138)
++..++......+..+.+...++..+...|+.+...+...++++
T Consensus 163 ~l~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l 206 (359)
T COG1463 163 ILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANL 206 (359)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45666777777777777777777777777777777655554443
No 86
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=56.61 E-value=63 Score=22.28 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
=..++|-++..--.++.|.|.|+-++-.++..-.+.--.-..++|..-..+.+||.
T Consensus 14 KvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELaklen 69 (71)
T COG5420 14 KVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKLEN 69 (71)
T ss_pred HHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567777877788888888888887777776655544455677777777777764
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.03 E-value=1.4e+02 Score=26.26 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
-.++..+.+....+...++.++.+..++++..++++.+..++.+++......
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~ 349 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN 349 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888888777777777555443
No 88
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.70 E-value=1.3e+02 Score=26.41 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
..++..+......|.+...+|+.--+.|+..+..
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444443
No 89
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.68 E-value=2e+02 Score=27.79 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=41.9
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIP-QLEQIDQIYDSVLKLEQAAYKLDH-------YAKRLEAKFKQLE 136 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p-yl~qID~Ie~~V~~LE~~a~~LD~-------ysk~LE~K~k~le 136 (138)
-.||..-...+..+...++.|+.+|+.++. |-+..+.++..+..|..-+..+.. -...||+.++.+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~ 432 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALS 432 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777544 334555555555555554444444 5566676666553
No 90
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.30 E-value=46 Score=23.51 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.+..|+..|..|+.-...|..=.+.|+.+++++.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555543
No 91
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=67 Score=24.86 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 88 EEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 88 ~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
.+|.++.+.++-|-.+|..+..++..|+.+...++.--.-|+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778888888888888888888888888877666653
No 92
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=55.18 E-value=1.1e+02 Score=24.61 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKLE----QAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~LE----~~a~~LD~ysk~LE~K~k~ 134 (138)
+...|.+-+..-.+|++..+.|+.+-.++ ..|+.=++++|.++-+|. ++...+|.-.+..|.+-|.
T Consensus 37 Tee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 37 TEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777666663 456666677776665554 4556677777777766554
No 93
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=54.85 E-value=1.1e+02 Score=24.73 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
.+.+...++...+..+.+....+...++++.
T Consensus 189 ~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~ 219 (291)
T TIGR00996 189 DIGALIDNLNRVLDVLADRSDQLDRLLDNLA 219 (291)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 94
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=54.83 E-value=33 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8909 109 DSVLKLEQAAYKLD-HYAKRLEAKFK 133 (138)
Q Consensus 109 ~~V~~LE~~a~~LD-~ysk~LE~K~k 133 (138)
..+++||.++++|+ .|-.+||..-+
T Consensus 21 ~nL~ELE~is~rlg~~Y~~~LeeaK~ 46 (51)
T PF11433_consen 21 RNLTELERISKRLGKSYQIRLEEAKE 46 (51)
T ss_dssp HHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 45678999999998 58899986544
No 95
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=54.14 E-value=4.2 Score=38.13 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.+++++.++.++|+.+.++++....|..++++++.
T Consensus 68 ~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E 102 (759)
T PF01496_consen 68 EIDELEEELEELEEELRELNENLEKLEEELNELEE 102 (759)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777666666543
No 96
>PRK06798 fliD flagellar capping protein; Validated
Probab=53.71 E-value=1.5e+02 Score=26.52 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhHHHHH---HHHHHhHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 63 EKMNNATITKYSDMKQIT---VNISNSIEEQNQRYK--------QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 63 EnmN~~~s~kY~~m~~~a---~~l~~~~~~Ln~ky~--------~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
.+++.+...+..+....- .|+...+.++=..|- ....+-++|+.|++++..+|. +|+.+-.+|-.+
T Consensus 336 ~kL~~al~~np~~V~~lF~g~~Gia~~l~~~l~~~~~~~G~i~~r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~q 412 (440)
T PRK06798 336 EALKKALKENPDAAKQFFFGINGLGKEMEKSLDKIFGDEGIIGERSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDK 412 (440)
T ss_pred HHHHHHHHHCHHHHHHHhcCCCcHHHHHHHHHHhhhCCCceeehhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHhhhh
Q psy8909 132 FKQLEK 137 (138)
Q Consensus 132 ~k~le~ 137 (138)
|.+||.
T Consensus 413 f~ale~ 418 (440)
T PRK06798 413 YQKLES 418 (440)
T ss_pred HHHHHH
No 97
>KOG0996|consensus
Probab=53.28 E-value=2.8e+02 Score=28.70 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=49.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEE----QNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~----Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
+.|+++.+..++++|..+-+....+|.+++............ +...-..|...-+.++++++.+.++=....
T Consensus 498 ~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 498 ARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 569999999999999999999999999988877775544443 333444444444556666666655544443
No 98
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=52.86 E-value=61 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
..-.+|..|+.++..|......||
T Consensus 85 ~l~~~i~~Le~~l~~L~~~~~~l~ 108 (134)
T cd04779 85 LVCDQIDGLEHRLKQLKPIASQTD 108 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 99
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.86 E-value=82 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
-+..+++++..+|..+..|+.=-..|+.+++++++
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555543
No 100
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=52.82 E-value=96 Score=23.25 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
....++++.+..++..||+-...|..+...|+.
T Consensus 77 ~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 77 REVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777666643
No 101
>PRK14011 prefoldin subunit alpha; Provisional
Probab=52.46 E-value=68 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhh
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKL----DHYAKRLEAKFKQLEK 137 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~L----D~ysk~LE~K~k~le~ 137 (138)
.-|-..|+.+++...+|..++.++ +.-..+|+.|+..+++
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~ 134 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQ 134 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444443 3344455577777754
No 102
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=52.40 E-value=28 Score=26.72 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
.+|+.|.+||+.|.-|+.|...|
T Consensus 102 kLE~EvreLEQlV~DLE~WLDal 124 (135)
T PF15466_consen 102 KLEKEVRELEQLVRDLEEWLDAL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999987654
No 103
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=52.13 E-value=80 Score=23.31 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy8909 118 AYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 118 a~~LD~ysk~LE~K~k~le 136 (138)
|...+.--|-|++||+.+|
T Consensus 70 v~~~E~~mk~l~~k~~~~e 88 (101)
T PF12308_consen 70 VRKMETQMKGLESKFRQVE 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444556666666554
No 104
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=51.81 E-value=94 Score=22.85 Aligned_cols=75 Identities=17% Similarity=0.311 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy8909 52 LNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA-KRLE 129 (138)
Q Consensus 52 l~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys-k~LE 129 (138)
++.+.....++-.||.....+|..... .|...++..+..-+.++..|..-..+-.+..+.+.+|..+-++. .+-|
T Consensus 58 ~e~~~~k~q~~~~~n~~e~e~Y~~~~~---~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~sR~e 133 (139)
T PF05615_consen 58 FEFSILKSQLILEMNKRERENYEQLNE---EIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPTSREE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345556778899999999999987764 56677778888888999999999999999999999998887776 4433
No 105
>PRK07857 hypothetical protein; Provisional
Probab=51.71 E-value=18 Score=26.74 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..+..+.++||+||.++-+|
T Consensus 28 ~~L~~lR~eID~ID~eIl~L 47 (106)
T PRK07857 28 AEIDELREEIDRLDAEILAL 47 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45778999999999998766
No 106
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=51.66 E-value=27 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQA 117 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~ 117 (138)
++|++||.++.+||+-
T Consensus 19 qkiedid~qIaeLe~K 34 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4566666666666654
No 107
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=51.58 E-value=1.2e+02 Score=24.16 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy8909 30 DPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYD 109 (138)
Q Consensus 30 ~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~ 109 (138)
...|+-.+...=.+.+..|+-||..+..- +...+-.-=.+|++..+.+.+.++.|+.-.......-.+-..++.
T Consensus 85 t~KLr~iv~~tsancs~QVqqeL~~tf~r------L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 85 TEKLRLIVSFTSANCSHQVQQELSSTFAR------LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp -------------------------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444556777778888777543 334444444566666666666666666666666666655555555
Q ss_pred HHHHHH
Q psy8909 110 SVLKLE 115 (138)
Q Consensus 110 ~V~~LE 115 (138)
++..++
T Consensus 159 eL~~F~ 164 (171)
T PF04799_consen 159 ELERFQ 164 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 108
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=51.00 E-value=93 Score=22.53 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
..+++..++.++..|......|+......+.+
T Consensus 85 l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 85 IEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444443
No 109
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=50.94 E-value=85 Score=22.09 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD 122 (138)
=+.+|+.+....+||.+..++-
T Consensus 52 a~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 52 AQELDQAEARANRLEEANREVS 73 (89)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3455556666666666555443
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.62 E-value=2.2e+02 Score=26.72 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH
Q psy8909 45 ADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI 98 (138)
Q Consensus 45 s~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~ 98 (138)
+.+++++++-...+.+-|.+.|...-.....|+.-...+...+....+....|.
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888887787777777777777777777777666666655555544443
No 111
>PLN02939 transferase, transferring glycosyl groups
Probab=50.44 E-value=1.3e+02 Score=30.02 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 83 ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 83 l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
|...---|+.--..|+.-+..+-++|+.|-.||.--.-||++.+.||+||-..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333345555566777788889999999999999999999999999999654
No 112
>KOG0161|consensus
Probab=50.41 E-value=3.6e+02 Score=29.18 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 45 ADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 45 s~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
..=+..|+.++..++.=++.........|.++.+....+.+.-+.+. .++..+..++++.+..|.+||.+...|+.-
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~---~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS---QEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777777776666666555555 456667778888888888888888888777
Q ss_pred HHHHHHHHHhhh
Q psy8909 125 AKRLEAKFKQLE 136 (138)
Q Consensus 125 sk~LE~K~k~le 136 (138)
...|-..+..++
T Consensus 1528 ~~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1528 KEELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 113
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=50.14 E-value=17 Score=26.56 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~L 121 (138)
.|-|.++|.+||++|..|
T Consensus 33 ~~pi~E~i~kLe~~addL 50 (96)
T PRK00965 33 MDPIEEEINKLEALADDL 50 (96)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 355666666666666554
No 114
>PRK07737 fliD flagellar capping protein; Validated
Probab=50.08 E-value=2e+02 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
++|+.|++++..||. +|+.+-.+|-.+|-+||
T Consensus 448 ~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale 479 (501)
T PRK07737 448 KDLNQIETQIDRFQD---RLKQIEDRYYKKFSAME 479 (501)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456777777766665 55555667777777765
No 115
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=49.91 E-value=1e+02 Score=22.71 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=49.4
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.+..|.+++.-+.-|.+.+-+=.+++..|..-|. .=|..+.++|+=+.-|.=.-.+|+.++..|+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk---~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLK---EKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998876555 4556677777666666666667776666554
No 116
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.09 E-value=96 Score=22.44 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 105 DQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 105 D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
..+++++..|++-...|...-..|+.++..
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 117
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=48.95 E-value=22 Score=25.25 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
.+|..+..+||.||.++-+|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998776
No 118
>PRK08724 fliD flagellar capping protein; Validated
Probab=48.93 E-value=2.1e+02 Score=27.50 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8909 120 KLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~le 136 (138)
+++.+-.+|..+|.+|+
T Consensus 639 Rle~~E~Ry~~QFtAMD 655 (673)
T PRK08724 639 RMESLEKRTHAKFAAMQ 655 (673)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555544
No 119
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=48.91 E-value=55 Score=20.26 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHHhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQ-RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~-ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
.+++.-...|.-.++-|.. ....-....+.++.|...+..+..++..|=.|++
T Consensus 11 Helr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 11 HELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666667766666 1111222467788888899999999988877765
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.41 E-value=1.5e+02 Score=25.16 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 67 NATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
..+-.+|.++.....++...++.|..+ +.....+|+..+++++++.+-..+|..=-+.|+.++
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~q---i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQ---IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665555555533 333344555555555555444444444444444433
No 121
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=48.32 E-value=1.3e+02 Score=23.78 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=29.5
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
+|+++......++..+.-+..+|.+-..- .+++|.++|.+|+.++...
T Consensus 87 ~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~eqV~el~~i~emv 134 (157)
T COG3352 87 NIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555443333 5788888888888776543
No 122
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=47.97 E-value=37 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
.-.-.++++|++++..|.++...|+.
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777888888888888777764
No 123
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.95 E-value=2.1e+02 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909 68 ATITKYSDMKQITVNISNSIEEQNQRY 94 (138)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky 94 (138)
.+...+.+++.....|......+..+|
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~ 389 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERY 389 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555544444444444
No 124
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=47.88 E-value=1.5e+02 Score=24.11 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=41.2
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 50 GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 50 ~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
-|-+....|++-+++-=.-...+|.+++.++.|...+=+.|+ ..+..|+..|+.-++.-.
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lk---k~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLK---KCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455566677777777666778899999999999988766666 445555555555554443
No 125
>KOG3684|consensus
Probab=47.39 E-value=1.5e+02 Score=27.34 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHh--HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 59 YEVLEKMNNATITKY--SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 59 y~LLEnmN~~~s~kY--~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
-++|..+|.--+-|. -++.+.++++-.-.+--+..|+-++...+.=|++|.+++.||.-...|
T Consensus 396 RkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l 460 (489)
T KOG3684|consen 396 RKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEAL 460 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665444443 356677888888888888889999999999999999999888754443
No 126
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=47.26 E-value=22 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.+..+..+||+||.++-+|
T Consensus 5 ~L~~lR~~ID~ID~eIl~L 23 (102)
T TIGR01801 5 SLEDLRAEVDQLNRQILAL 23 (102)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998766
No 127
>PRK06285 chorismate mutase; Provisional
Probab=47.06 E-value=26 Score=24.67 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.6
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..|.++..+||+||.++-+|
T Consensus 7 ~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 7 KRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998766
No 128
>PRK07248 hypothetical protein; Provisional
Probab=46.51 E-value=23 Score=24.26 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+.++||+||.++-+|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVAL 20 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667889999999998776
No 129
>KOG1003|consensus
Probab=46.45 E-value=1.7e+02 Score=24.18 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh
Q psy8909 47 YLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQL 97 (138)
Q Consensus 47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l 97 (138)
++.|+|+.+-.=..+=++.=......-.-|.....++++.-+.+.++-..+
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~ 142 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY 142 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
Confidence 567888777655544444333333333344555555555555555544433
No 130
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=46.35 E-value=23 Score=23.96 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998766
No 131
>PHA02414 hypothetical protein
Probab=46.33 E-value=1.2e+02 Score=22.54 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy8909 30 DPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYD 109 (138)
Q Consensus 30 ~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~ 109 (138)
|.+++.|..++=+-=.+.=.||+..-. | |..-.....+++++..+|.+.+---.+||..+ .=||-.+|+
T Consensus 3 D~~in~Lv~~v~~ledKiQ~Gelt~kg-d-------n~eL~~av~ELRdivvslDKd~Av~sEKqshi---~yQi~~Lee 71 (111)
T PHA02414 3 DKEINNLVSQVETLEDKIQEGELTDKG-D-------NKELEVAVAELRDIVVSLDKDVAVNSEKQSHI---YYQIERLEE 71 (111)
T ss_pred chHHHHHHHHHHHHHHHHhcCccccCC-c-------hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHH---HHHHHHHHH
Confidence 566777777665555555668887543 2 22223345789999999999988888888775 347888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 110 SVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 110 ~V~~LE~~a~~LD~ysk 126 (138)
.|+.|++.-.+=|.--|
T Consensus 72 ~i~aL~~~n~ked~~Kk 88 (111)
T PHA02414 72 KISALAESNKKEDTEKK 88 (111)
T ss_pred HHHHHHhccccccchhh
Confidence 99888887665554433
No 132
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=45.92 E-value=24 Score=23.94 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+.++||.||.++-.|
T Consensus 1 L~~lR~~Id~iD~~i~~L 18 (81)
T TIGR01805 1 LELIRKKIDEIDDKLVVL 18 (81)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456788999999998766
No 133
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.80 E-value=78 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=21.8
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS 110 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~ 110 (138)
..|..+......|..-+..|++|...|..-|+++.+--.+
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq 65 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQ 65 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566666666666666666655555555555554444333
No 134
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=45.57 E-value=2.3e+02 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=11.0
Q ss_pred CCchHHHHHHHHHHHHHHH
Q psy8909 28 SHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~ 46 (138)
..|..++.+...|-.-++.
T Consensus 491 ~GDstlr~i~s~Lr~~l~~ 509 (661)
T PRK06664 491 RGEFTLLRLKSRLKTIISS 509 (661)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 3566666666666555554
No 135
>KOG0811|consensus
Probab=45.09 E-value=1e+02 Score=26.22 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHH
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLE----QIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~----qID~Ie~~V~~LE~~a~ 119 (138)
.+....|+..+.++|+.+..|...+. .||.||++|......|.
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 34566788888888888888877664 68888888877665553
No 136
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=44.83 E-value=25 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
++..+.++||+||.++-+|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3567888999999998766
No 137
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=44.65 E-value=22 Score=25.99 Aligned_cols=18 Identities=44% Similarity=0.564 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~L 121 (138)
.|-|.+||.+||++|..|
T Consensus 32 ~~pi~eqi~kLe~~addl 49 (97)
T PF05440_consen 32 MDPINEQIDKLEKAADDL 49 (97)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345556666666665544
No 138
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=44.51 E-value=26 Score=23.41 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+.++||+||.++-.|
T Consensus 1 L~~lR~~ID~iD~~iv~L 18 (76)
T TIGR01807 1 LEELRNKIDAIDDRILDL 18 (76)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998766
No 139
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.44 E-value=1.3e+02 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+-+..|+.-...++.-.+.||.+...+
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l 97 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 140
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=44.38 E-value=59 Score=18.38 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
...++.+...+..+..++..|-.|+
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~l~~~~ 64 (65)
T cd00082 40 REYLERIREEAERLLRLINDLLDLS 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777888888888887775
No 141
>KOG2189|consensus
Probab=44.31 E-value=51 Score=32.20 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHHH----Hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 67 NATITKYSDMKQITVNISNSIEEQNQRY----KQ-LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky----~~-l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
-+...++.+|.....=+...++.-.-.- +. -.|.-..|+++|.++++||.=+-++++....|.+++.++.
T Consensus 52 v~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~ 126 (829)
T KOG2189|consen 52 VNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELL 126 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455666666666554444443311111 11 1455789999999999999999999999999999988764
No 142
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.92 E-value=2.7e+02 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 105 DQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 105 D~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
..+...+...+.+...|+.+...|..+
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 502 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREKLLER 502 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555544433
No 143
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=43.67 E-value=1e+02 Score=21.94 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+-+++..+++++.+|+.....|+.+...++
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888877777766665
No 144
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.56 E-value=1.7e+02 Score=23.58 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
+..|.+...-..++....++|.+..+.=. -++.|-.||.+++..+
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~ 175 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVR 175 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443211 2333334444444333
No 145
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.48 E-value=2.9e+02 Score=26.10 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=54.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 51 ELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 51 El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+|......+.-+-..=.....-|..+.+....+.+.+.+.+.+...++..|.+|...|-+-. ..|+.|.++|..
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Ar------e~l~~~~~~l~e 428 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAR------ENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34444444443333334556678889999999999999999999999999999887776543 345566666655
Q ss_pred HHHhhhh
Q psy8909 131 KFKQLEK 137 (138)
Q Consensus 131 K~k~le~ 137 (138)
--+-|++
T Consensus 429 ikR~mek 435 (570)
T COG4477 429 IKRYMEK 435 (570)
T ss_pred HHHHHHH
Confidence 5555544
No 146
>PRK00846 hypothetical protein; Provisional
Probab=43.29 E-value=1.1e+02 Score=21.29 Aligned_cols=33 Identities=3% Similarity=0.158 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
|+++.+.|++.-..+.+|-.-.+.|=.|++.++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444444455555555543
No 147
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=43.26 E-value=30 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..|.++..+||.||.++-+|
T Consensus 8 ~~L~~lR~~ID~ID~~iv~L 27 (101)
T PRK07075 8 TGLDDIREAIDRLDRDIIAA 27 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998766
No 148
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=43.13 E-value=2e+02 Score=24.17 Aligned_cols=65 Identities=12% Similarity=0.240 Sum_probs=35.2
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQID-QIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID-~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
-+...+.+.+..|...+..|-.+...|..++..+. .|+.-+..+++++..++.-...+-.++..+
T Consensus 226 w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l 291 (304)
T PF02646_consen 226 WRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKL 291 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555666666666666666666555555554432 344444455555555555555555554444
No 149
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=42.90 E-value=58 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=20.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 92 QRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 92 ~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
-.+..+...-+.|+.|+..|..||.-.---..-.+.|..+
T Consensus 5 l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~ 44 (116)
T PF10552_consen 5 LLMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKA 44 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3444555555666666666666655443333333444433
No 150
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=42.66 E-value=45 Score=26.44 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
-++.+..--+|+||+++|++.-.+=.- -...+.|.|...|
T Consensus 79 qee~k~~~~eLqPYFdKLN~~~SsK~v--lt~~E~d~y~eAL 118 (162)
T PF12207_consen 79 QEEYKKLTMELQPYFDKLNGHKSSKEV--LTQEEYDQYIEAL 118 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---HHHH--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHhcCCcchhhh--cCHHHHHHHHHHH
Confidence 456666778899999999987333222 3456778887776
No 151
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=42.49 E-value=38 Score=24.45 Aligned_cols=69 Identities=16% Similarity=0.340 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy8909 35 ELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 35 ~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~L 114 (138)
+....-|..++.|-+..+-....+- .+. +.|+..+= .--+.+|.+++|+|.+|.++++.....
T Consensus 16 EsLr~Ff~RT~~~W~~~a~~~~~~~---------~~~--KeLrk~aF------~lAe~Ry~E~k~~l~~le~~~ee~~~~ 78 (96)
T PF13422_consen 16 ESLRDFFARTSEYWQEWAIESNRDA---------HRG--KELRKDAF------DLAEERYWELKPELDELEDLEEEQAGI 78 (96)
T ss_pred CcHHHHHHHhHHHHHHHHHHccccc---------cch--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3466778888888776554443322 122 23333332 334689999999999999999988888
Q ss_pred HHHHHH
Q psy8909 115 EQAAYK 120 (138)
Q Consensus 115 E~~a~~ 120 (138)
+.++..
T Consensus 79 ee~~~~ 84 (96)
T PF13422_consen 79 EEVVSR 84 (96)
T ss_pred hHHhhh
Confidence 877643
No 152
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.20 E-value=1.1e+02 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
+++....++...++|+.+...+.+++.+...|+...+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666777888888888888888888887754
No 153
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.16 E-value=1.5e+02 Score=22.41 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8909 120 KLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~le 136 (138)
.+..-..-||.|+..+|
T Consensus 107 ~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 107 SVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334445555555554
No 154
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.15 E-value=1.6e+02 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred HhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSV----LKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V----~~LE~~a~~LD~ysk~LE~K 131 (138)
..++.-+.++.+.|.+- ..+++....++.+..+|+.-
T Consensus 152 ~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~~ 192 (204)
T PF04740_consen 152 KKLQETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQSM 192 (204)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555554432 34455555666666655543
No 155
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=42.08 E-value=68 Score=18.40 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
...++.|+..+..+..++..+-.|++
T Consensus 37 ~~~~~~~~~~~~~~~~~v~~l~~~~~ 62 (66)
T smart00388 37 REYLETILRSAERLLRLINDLLDLSR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888765
No 156
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=42.01 E-value=1.1e+02 Score=20.77 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
+.||..+|..|-..|..+-.....|-.-..+
T Consensus 59 ~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 59 LDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888777776655544433
No 157
>KOG4674|consensus
Probab=42.01 E-value=4.8e+02 Score=28.18 Aligned_cols=53 Identities=9% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909 42 KKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY 94 (138)
Q Consensus 42 ~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky 94 (138)
.+|-.||..|.++....|.++..=|..-..+|.-+...+.++...+......+
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~ 1204 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS 1204 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999998888888887776666555
No 158
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=41.78 E-value=27 Score=25.94 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD 122 (138)
+|-|++||.+||+.|..|.
T Consensus 33 v~pi~Eqi~kLe~~vddl~ 51 (108)
T COG4062 33 VDPIEEQIKKLETLVDDLE 51 (108)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 5678888888888876653
No 159
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=41.31 E-value=2.8e+02 Score=25.35 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHHh-hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Q psy8909 30 DPRLNELATNMFKKTADYLI-GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIY 108 (138)
Q Consensus 30 ~~~l~~la~~mf~kvs~yl~-~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie 108 (138)
+++-.++...+-.-++.++. .++.....+.+-++.+|+....--.++++....+...++........-...-+.++.|+
T Consensus 439 ~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 518 (679)
T TIGR02916 439 NWEVRDLLKTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVE 518 (679)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 33344444444455555554 23433334444455555544433344555444444333332211111111122345666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8909 109 DSVLKLEQAAYKLDHY 124 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~y 124 (138)
..+..+.+++..|..+
T Consensus 519 ~~~~rl~~ll~~l~~~ 534 (679)
T TIGR02916 519 NAVNRMKKLLAQLRSK 534 (679)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6777777776666543
No 160
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.25 E-value=87 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=13.8
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQLE 102 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~ 102 (138)
..+|..-...+...+..|+.....+..-+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544444443333
No 161
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.92 E-value=2e+02 Score=23.51 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=4.5
Q ss_pred ccCCCCCchHHHHHHHHH
Q psy8909 23 FEPMISHDPRLNELATNM 40 (138)
Q Consensus 23 ~~~~~~~~~~l~~la~~m 40 (138)
.+.-.++.++|+....++
T Consensus 157 ~e~~~~~~~dL~~~L~ei 174 (312)
T PF00038_consen 157 VEVDQFRSSDLSAALREI 174 (312)
T ss_dssp ----------HHHHHHHH
T ss_pred eeecccccccchhhhhhH
Confidence 333335556666655544
No 162
>PRK02224 chromosome segregation protein; Provisional
Probab=40.89 E-value=3.2e+02 Score=25.82 Aligned_cols=31 Identities=6% Similarity=0.173 Sum_probs=11.6
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
.+...+..++....++..-.++|..++.++.
T Consensus 231 ~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~ 261 (880)
T PRK02224 231 QARETRDEADEVLEEHEERREELETLEAEIE 261 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 163
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.78 E-value=1.1e+02 Score=20.80 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
-+..|++++..++.-+..|..=.+.|+.++++++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544
No 164
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=40.70 E-value=31 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+..+||+||.++-+|
T Consensus 1 L~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 1 LADIREAIDRIDLALVQA 18 (82)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356778999999998766
No 165
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=40.38 E-value=1.7e+02 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
+..+.++|+++.+.+..++.-...|+.
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEELEE 74 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555555554444443
No 166
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=40.36 E-value=2.1e+02 Score=23.47 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=39.1
Q ss_pred ccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909 18 TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNAT---ITKYSDMKQITVNISNSIEEQNQRY 94 (138)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~---s~kY~~m~~~a~~l~~~~~~Ln~ky 94 (138)
||+.+|+++..+..+=. +++..+..|++-=..+=.+=-+-|.++.+.. ...|.-++..-..+...++.+-..-
T Consensus 2 ~~~~Gy~~l~~r~~~g~----~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H 77 (240)
T cd07672 2 TSTGGYDCIIQHLNDGR----KNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSH 77 (240)
T ss_pred CCCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 78899998665555544 4455566666633322222334555555532 2355444444444444444444433
Q ss_pred HhhH
Q psy8909 95 KQLI 98 (138)
Q Consensus 95 ~~l~ 98 (138)
..|.
T Consensus 78 ~~la 81 (240)
T cd07672 78 IQLA 81 (240)
T ss_pred HHHH
Confidence 3333
No 167
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.31 E-value=2.4e+02 Score=24.13 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHh-------hHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQ-------LIPQLEQIDQIYDSVL 112 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~-------l~pyl~qID~Ie~~V~ 112 (138)
.++.|+..-++.-+.++-+.... .+-.|+.|..+|++|.
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~ 141 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQ 141 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556665555555544444333 3444444444444443
No 168
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=39.75 E-value=34 Score=23.32 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~L 114 (138)
|..+.++||+||.++-+|
T Consensus 1 L~~lR~~ID~ID~~il~L 18 (83)
T TIGR01799 1 LEDLRGEIDGVDQELLHL 18 (83)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356788999999998665
No 169
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.68 E-value=2e+02 Score=23.22 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
++..-++.++..-+.|..++.+=+.+++ +-++|.-..++..-.-+++.+.+.++
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344333334444433333333 22333333333333333344444443
No 170
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.58 E-value=2.3e+02 Score=23.87 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIP------QLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p------yl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
......++........+.+...++.-+.| ..++|.+++.++..++.-...+..
T Consensus 177 ~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 177 NEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555533332 445566666666666655444443
No 171
>KOG0980|consensus
Probab=39.46 E-value=4.1e+02 Score=26.70 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=55.8
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLI----PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~----pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+...|.++...+.-...-.+.++++|.+|. ..|.+-|+|-+|++-=++....++.--..|.-.+.++++
T Consensus 408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 408 AQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334488888888888888888888888875 468889999999988888888888888888877777654
No 172
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.37 E-value=1.8e+02 Score=26.97 Aligned_cols=12 Identities=33% Similarity=0.149 Sum_probs=5.3
Q ss_pred HHHHhhHhhhhH
Q psy8909 45 ADYLIGELNSTQ 56 (138)
Q Consensus 45 s~yl~~El~~t~ 56 (138)
...|..+-=-|.
T Consensus 152 ~eil~~~~L~T~ 163 (555)
T TIGR03545 152 RALLKGEDLKTV 163 (555)
T ss_pred HHHhccCCCCcH
Confidence 445554443333
No 173
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.34 E-value=1.4e+02 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
.-..+++.+|+.++..|+.+...||....
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888876553
No 174
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.18 E-value=2.2e+02 Score=23.53 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy8909 64 KMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLK 113 (138)
Q Consensus 64 nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~ 113 (138)
++++..+.+|..+-+....+..--.+|..-....+.-.+.|+.+++.++.
T Consensus 50 ~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 50 KLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45556666666666666665555555555555555555555555555443
No 175
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=38.88 E-value=3.3e+02 Score=25.50 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=63.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhh-------HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh-hHHH
Q psy8909 29 HDPRLNELATNMFKKTADYLIG-------ELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ-LIPQ 100 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~-------El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~py 100 (138)
++..+..-+.++-+++..||.| -...+..+.++|+.|=.+.......+..-..+|...+-.|+.+... -+..
T Consensus 302 k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL 381 (531)
T PF15450_consen 302 KEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTL 381 (531)
T ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444455555566666654 2335667788888777777766666666666666666666555433 1222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 101 LEQIDQIYDS-VLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 101 l~qID~Ie~~-V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
-..|+++... +...=.....||.|-+..++..+.+.
T Consensus 382 ~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~ 418 (531)
T PF15450_consen 382 NLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQ 418 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444433 33344556778888888888777664
No 176
>PRK02224 chromosome segregation protein; Provisional
Probab=38.79 E-value=3.4e+02 Score=25.60 Aligned_cols=10 Identities=0% Similarity=0.331 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy8909 32 RLNELATNMF 41 (138)
Q Consensus 32 ~l~~la~~mf 41 (138)
+..++..++|
T Consensus 150 ~R~~ii~~l~ 159 (880)
T PRK02224 150 DRQDMIDDLL 159 (880)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 177
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.78 E-value=1.4e+02 Score=21.20 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+.....-+.|+.||..+..|+.-...|..=-+.++.+++.+
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777778888777777777777777777664
No 178
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.70 E-value=1.2e+02 Score=20.48 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 83 ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 83 l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
|..-++.-......-..+...|..+-.++..+|..+..|..-...++.++..++
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444455556666666666666655555555555555554444
No 179
>PRK01203 prefoldin subunit alpha; Provisional
Probab=38.55 E-value=1.1e+02 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+.|+.|.+++.+||+++.+.-.-.++|+..+..+
T Consensus 87 ~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888888888888777654
No 180
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.53 E-value=3.1e+02 Score=24.95 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLK 113 (138)
Q Consensus 100 yl~qID~Ie~~V~~ 113 (138)
.++.++.++.++..
T Consensus 327 l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 327 VLEYAEKIKEELDQ 340 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 181
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=38.19 E-value=87 Score=22.13 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHH-----HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q psy8909 29 HDPRLNELATNMFKKTAD-----YLIGELNSTQADYEVLEKMNNATITKYSDMKQ 78 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~-----yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~ 78 (138)
...++..-.+.++..+.. -+=+++++...+|++..|++-.+..-|+|+.+
T Consensus 19 ~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~ 73 (80)
T PRK15326 19 GVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDA 73 (80)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432 23478899999999999999999888877655
No 182
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.12 E-value=2.8e+02 Score=24.41 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q psy8909 31 PRLNELAT 38 (138)
Q Consensus 31 ~~l~~la~ 38 (138)
|.+.+...
T Consensus 330 ~~l~~~~~ 337 (451)
T PF03961_consen 330 PELKEKLE 337 (451)
T ss_pred HHHHHHHH
Confidence 44444433
No 183
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.95 E-value=1.9e+02 Score=22.27 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Q psy8909 40 MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQL----IPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 40 mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l----~pyl~qID~Ie~~V~~LE 115 (138)
.+..=..-|..||+.+......+..=|.+.-.....++.-...+...+.+|..--..+ ....+.+..-..+|..||
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566788999999999999988888888888888877777777777666544433 334445555666777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 116 QAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 116 ~~a~~LD~ysk~LE~K~ 132 (138)
....-+....+.+|..-
T Consensus 101 ~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 101 SLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 77777777777777653
No 184
>KOG0996|consensus
Probab=37.64 E-value=2.6e+02 Score=28.89 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=40.4
Q ss_pred cccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909 15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY 94 (138)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky 94 (138)
.+.|+-+ ..+..|.=-+=+...++++..- .......+..|+... .+++.....++.-++.+...+
T Consensus 765 ~mg~~~~----~t~~s~~~v~~le~~l~~~~~~-------~~~~~~~~~~~ee~~----~~lr~~~~~l~~~l~~~~~~~ 829 (1293)
T KOG0996|consen 765 RMGTSIR----VTGVSKESVEKLERALSKMSDK-------ARQHQEQLHELEERV----RKLRERIPELENRLEKLTASV 829 (1293)
T ss_pred CCCCccc----cCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHhhHHHHhHHHHHHHHH
Confidence 6666655 3334444333344444443332 233344444555433 334444444444444444333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
..+.+ .|...+.+|..+|..
T Consensus 830 k~~~~---~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 830 KRLAE---LIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHH---HHHHHHHHHHHHHHH
Confidence 33333 566666677777666
No 185
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.60 E-value=2.5e+02 Score=23.74 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8909 53 NSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 53 ~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~K 131 (138)
+-...+...|...|..-...-.++.+.+. ..+..|=++|.-|. .-||-|+-.= ..|+++-..|-+|-.+.|.+
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~lLqqy~~~~---~~i~~le~~~~~~l~~ak~eLqe~eek~e~~ 82 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKLLQQYDIYR---TAIDILEYSNHKQLQQAKAELQEWEEKEESK 82 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHHHHHHHHHH---HHHHHHHccChHHHHHHHHHHHHHHHHHHhH
Confidence 33456677888888887777666665543 34444555555443 4445555443 34788888888888888888
Q ss_pred HHhhhh
Q psy8909 132 FKQLEK 137 (138)
Q Consensus 132 ~k~le~ 137 (138)
+..|++
T Consensus 83 l~~Lq~ 88 (258)
T PF15397_consen 83 LSKLQQ 88 (258)
T ss_pred HHHHHH
Confidence 877765
No 186
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=37.00 E-value=2.1e+02 Score=22.72 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=60.3
Q ss_pred ccCccccccCCcccCCCCCchHHHHHHHHHHHHHHH---HHhhHhhhhH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8909 11 NKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTAD---YLIGELNSTQ--ADYEVLEKMNNATITKYSDMKQITVNISN 85 (138)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~---yl~~El~~t~--~dy~LLEnmN~~~s~kY~~m~~~a~~l~~ 85 (138)
.|.-+.|+..++-.+...|-.+|++.+.+-+-++++ |+.-+=..+. ...+.- -...|.+...+-.....
T Consensus 28 ~r~y~f~s~~~~i~~ii~h~NNlN~i~~r~~l~~~kl~sylGleKD~Se~~S~~K~P------f~~~~k~~~~ifkegg~ 101 (163)
T PF03233_consen 28 DRRYVFSSVKGNIQSIINHCNNLNEIVGRNWLKLSKLLSYLGLEKDPSEGLSKSKSP------FESFFKDLSKIFKEGGG 101 (163)
T ss_pred CceEEeecCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccCCccccccCCCc------HHHHHHHHHHHHHhcCC
Confidence 444566777777888888999999999987766554 5554433332 111100 00122223333222222
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q psy8909 86 SIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA---YKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 86 ~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a---~~LD~ysk~LE~K~k~l 135 (138)
.-+..-..-..|+.-.++|+.|++++-.|+.-+ ..+..+.|.++.+++++
T Consensus 102 d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I 154 (163)
T PF03233_consen 102 DKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEI 154 (163)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHH
Confidence 222222233445555557888888777665432 22334444444444443
No 187
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.98 E-value=1.5e+02 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
++..-++|.++...+.+++.+...|+
T Consensus 15 i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 15 VESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555554444443
No 188
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.91 E-value=2.1e+02 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 77 KQITVNISNSIEEQNQRYKQ--LIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~--l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
..-...|...+..+..+-.. |-.+...|+++=+++.+||+.+.++..
T Consensus 98 ~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 98 TRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444433333 445566677777777777776666543
No 189
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=36.74 E-value=3.3e+02 Score=24.87 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred CchH-HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHH-HHHH
Q psy8909 29 HDPR-LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLE-QIDQ 106 (138)
Q Consensus 29 ~~~~-l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~-qID~ 106 (138)
-|+. |.+....=++.|..++.|+..-+-.=-.|-+-||.....-+.-+.+...+|.+.+..|..+.+.+..-+. ....
T Consensus 372 iDe~KL~~al~~~p~~v~~~F~gd~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~~ 451 (483)
T COG1345 372 IDEAKLKAALNEDPDSVREFFGGDGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEAAEER 451 (483)
T ss_pred ECHHHHHHHHHhChHHHHHHhcCCccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 9999999999999999993332223336667777777777677777778888888888877776554332 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+..|-..|+.+..++..-...|=..|..+
T Consensus 452 ~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 452 YKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666777777777777776666655544
No 190
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.59 E-value=91 Score=21.57 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
.+|..-.+...+++.. -...++.+..+.+..++.|..||.++.
T Consensus 24 lHY~~k~~~~~~ls~~------d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 24 LHYRSKRKTAASLSTD------DQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555554444443322 234466777788888888888888764
No 191
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=36.59 E-value=40 Score=23.00 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~L 114 (138)
..+..+||+||.++-+|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (83)
T TIGR01797 2 LALREKISAIDEKLLKL 18 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778999999998665
No 192
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=36.54 E-value=2.3e+02 Score=23.02 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q psy8909 105 DQIYDSVLKLEQ-AAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 105 D~Ie~~V~~LE~-~a~~LD~ysk~LE~K~k~l 135 (138)
.+|++-|..|.. +..+|..+...++.++|.+
T Consensus 80 ~~ik~~i~~l~~~i~nql~~~~~~~~~~~kt~ 111 (190)
T PF09074_consen 80 EDIKKLIKSLGNQINNQLEKTVNSLSEKVKTV 111 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444443 5556666666666665544
No 193
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.54 E-value=3.7e+02 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
..++.|-.+..++..++.-+..-++--++|+..++++.+
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555566666666666666666666677776666543
No 194
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=36.51 E-value=1.4e+02 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHH
Q psy8909 62 LEKMNNATITKYSDMKQITVNIS 84 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~ 84 (138)
|.+|+-++...|.-++.++..++
T Consensus 41 l~kldlVtREEFd~q~~~L~~~r 63 (79)
T PF04380_consen 41 LSKLDLVTREEFDAQKAVLARTR 63 (79)
T ss_pred HHHCCCCcHHHHHHHHHHHHHHH
Confidence 44455555555555554444333
No 195
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.48 E-value=2.3e+02 Score=22.97 Aligned_cols=121 Identities=8% Similarity=0.116 Sum_probs=0.0
Q ss_pred ccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHH
Q psy8909 16 LSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYK 95 (138)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~ 95 (138)
++|+|.+|.+.-.---.+..++..+-...+.+-...-..-.-+-+ +..++.-+..=..+...+......-......-..
T Consensus 9 ~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~-l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~ 87 (264)
T PF06008_consen 9 VNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKE-LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQ 87 (264)
T ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhh
Q psy8909 96 QLIPQLEQIDQIYDSVLKLEQAAYKLDH-----YAKRLEAKFKQLEK 137 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~-----ysk~LE~K~k~le~ 137 (138)
.-+.....|..+...|..|-.-+..|.. -...|...++.+++
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~ 134 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQR 134 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHH
No 196
>KOG4117|consensus
Probab=36.44 E-value=1.4e+02 Score=20.58 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q psy8909 43 KTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 43 kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 92 (138)
.+..||+|=|+-+..-|. .|-.-.+.+-.+|..-..+|++++.+|-.
T Consensus 16 ~LTs~vQ~lLQq~QDkFQ---tMSDQII~RiDDM~~riDDLEKnIaDLm~ 62 (73)
T KOG4117|consen 16 DLTSVVQGLLQQTQDKFQ---TMSDQIIGRIDDMSSRIDDLEKNIADLMT 62 (73)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 345566666655554443 34555566666666666666665555543
No 197
>KOG0612|consensus
Probab=36.34 E-value=4e+02 Score=27.67 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 96 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
....|..+|-++...+..+++....|..+...|....+.
T Consensus 568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~ 606 (1317)
T KOG0612|consen 568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKK 606 (1317)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666665555544443
No 198
>PHA02675 ORF104 fusion protein; Provisional
Probab=36.31 E-value=1e+02 Score=22.20 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
..+..|++.-..+-..++.+...++.|
T Consensus 37 ~RL~~L~k~~~~i~~cC~~~~~~L~RL 63 (90)
T PHA02675 37 ERLVSLLDSYKTITDCCRETGARLDRL 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 199
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.86 E-value=1.5e+02 Score=20.75 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
...+-+.|+.|++++..|+.....+-.....|+..+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555677777777777777777777777666665544
No 200
>PF08775 ParB: ParB family; InterPro: IPR014884 ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognises A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module []. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site []. ; PDB: 1ZX4_A 2NTZ_B.
Probab=35.82 E-value=83 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q psy8909 54 STQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 54 ~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 92 (138)
.+..||++|-++-+....+=..+.+.+.++...+..+..
T Consensus 7 Ls~~DY~~L~kv~~~~~~~~~~l~~~i~~v~~~~~~~~~ 45 (127)
T PF08775_consen 7 LSNSDYKLLLKVMKQLEKNKVSLDELIDNVRSEIENIDD 45 (127)
T ss_dssp --HHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 356799999998887777777777777777766555543
No 201
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.57 E-value=2.7e+02 Score=24.28 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy8909 55 TQADYEVLEKMNNATITK 72 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~k 72 (138)
+.+|+...-.+-..|+.+
T Consensus 192 ~~e~l~~F~~l~~~T~~R 209 (406)
T PF02388_consen 192 SREELDDFYDLYKETAER 209 (406)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 446777666666666654
No 202
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.29 E-value=33 Score=31.53 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ 123 (138)
||+++.++|.+|++-...|+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 455555555555554443333
No 203
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=35.20 E-value=1.9e+02 Score=21.68 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQL-EQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl-~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
..+.....+++..+.+=+.+...-++.+ ..+|++.+.|+.||..+..|..=.+
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445556666677777777777777765 5799999999999988887765444
No 204
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.10 E-value=2.7e+02 Score=23.37 Aligned_cols=55 Identities=4% Similarity=-0.035 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
........++..++.++...+.+.+.+-.++.++.....+++..-.+-.++.+.|
T Consensus 52 ~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 52 AAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred hhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666666666666666666666666666666655554
No 205
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=35.08 E-value=13 Score=34.82 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=0.0
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+...+......+......|.....+.+.|-+.+|.+-....+++.....++.|-++||.
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666667777777888899999999999888888888888999888873
No 206
>PRK09239 chorismate mutase; Provisional
Probab=34.81 E-value=61 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~L 114 (138)
-..|..+..+||.||.++-+|
T Consensus 9 ~~~L~~lR~~ID~ID~eIv~L 29 (104)
T PRK09239 9 PAELAALRQSIDNIDAALIHM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999998766
No 207
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.72 E-value=1.5e+02 Score=20.12 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
++.++..+.+|+.....+..=.+.++.+
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333333333
No 208
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.68 E-value=2.5e+02 Score=22.74 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=70.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 26 MISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
++.....|..=+..|...+..|+.+=-......-.+...+..-.. .|.+=..++..+.++..-|.+........++++.
T Consensus 7 ~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~-~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 7 VEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH-HGPKDPMMAECLEKFSDGLNHILDSHAELLEATQ 85 (200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777778888888777777777777777777644 4555555888888888888888777777777765
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 Q---------IYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 106 ~---------Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
. +.+.|...=+.=.+.|..+..+++.+
T Consensus 86 ~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al 121 (200)
T cd07639 86 FSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAAL 121 (200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHH
Confidence 3 33344444444455555555555443
No 209
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=2.9e+02 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
+-+.|..-..++...+...+..-..||++...+.+|+.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444443
No 210
>KOG3366|consensus
Probab=34.56 E-value=1.2e+02 Score=24.29 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhhH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 86 SIEEQNQRYKQLI-------PQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 86 ~~~~Ln~ky~~l~-------pyl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
-+..++.+|++|. .|+++||+-++.. ..+-.....-+.-..+|+..+..
T Consensus 67 ~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~ 123 (172)
T KOG3366|consen 67 LVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEK 123 (172)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677766 6888888766543 23333333333333444443333
No 211
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=34.26 E-value=1.3e+02 Score=22.20 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 103 QIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD 122 (138)
.||.-|.-|.+||.-+..||
T Consensus 71 ~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 71 YLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 35555666666666666655
No 212
>KOG0612|consensus
Probab=34.25 E-value=5e+02 Score=27.02 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=25.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
-++.++..++.+.+++...|+.-+..+-.+-+-+..+..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777666666544433
No 213
>PRK01203 prefoldin subunit alpha; Provisional
Probab=34.24 E-value=1.4e+02 Score=22.80 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+++.-+-+||+.+..++..|..+..+++.-...|+.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667778888888888888888888776666654
No 214
>PHA03395 p10 fibrous body protein; Provisional
Probab=34.02 E-value=1.5e+02 Score=21.36 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
-|+..++.+..|-..|+. ++++++..+-.++++-.+||+.+..|
T Consensus 8 ~Ir~dIkavd~KVdalQ~---~V~~l~~nlpdv~~l~~kLdaq~~~L 51 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQA---AVDDVRANLPDVTEINEKLDAQSASL 51 (87)
T ss_pred HHHHHHHHHhhHHHHHHH---HHHHHHhcCCcHHHHHHHHHhHHHHH
Confidence 345555555555444443 45555555554445555555555444
No 215
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.90 E-value=88 Score=21.97 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
-..+++++|++++..|++....|+.+.
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 101 (102)
T cd04789 75 LLLERLSSLAEQIARKQQARDLLAALL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355788899999999999998888764
No 216
>KOG4514|consensus
Probab=33.79 E-value=2.7e+02 Score=22.98 Aligned_cols=34 Identities=6% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 89 EQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 89 ~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
+|=.|-+++..-++-+.++-.||..+--+|..||
T Consensus 186 ~lLAk~EEi~ksm~pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 186 QLLAKAEEITKSMKPVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555554444
No 217
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=33.68 E-value=14 Score=27.65 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~L 121 (138)
+-++|++.+..|..|++.+..|
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~L 71 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPDL 71 (138)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555554444433
No 218
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=33.48 E-value=48 Score=20.21 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy8909 117 AAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 117 ~a~~LD~ysk~LE~K~k~le~ 137 (138)
+|.+|=.-+.-||.|+..+|+
T Consensus 15 AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 15 AVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHhccHHHHHHHHhh
Confidence 566677777777777777764
No 219
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.24 E-value=4.2e+02 Score=24.94 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
+..++..-+..+.++-+....++.-+++|+..|..+..||+-+.
T Consensus 309 L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~ 352 (557)
T COG0497 309 LKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVK 352 (557)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333333444444444444444555555555555555544433
No 220
>PF13166 AAA_13: AAA domain
Probab=33.07 E-value=3.9e+02 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=21.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHH
Q psy8909 23 FEPMISHDPRLNELATNMFKKTADYLIGELNSTQADY 59 (138)
Q Consensus 23 ~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy 59 (138)
|=.-+|-+++..+.....|+...+-...+++.....|
T Consensus 260 fC~q~~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~~~ 296 (712)
T PF13166_consen 260 FCQQEPLSEERKERLEKYFDEEYEKLIEELEKAIKKL 296 (712)
T ss_pred CCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333355666666666677775555555666555444
No 221
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=32.99 E-value=2.5e+02 Score=22.35 Aligned_cols=56 Identities=20% Similarity=0.327 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.+...+..|..+-..+..--..+..+..++..+++-...|..-...|+.+|..+++
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443334444445555555555555555555555556655543
No 222
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=32.99 E-value=1.6e+02 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
-..-+-+++..++.++..|.++...||.
T Consensus 74 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 74 LLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888877774
No 223
>KOG4515|consensus
Probab=32.97 E-value=2.8e+02 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=37.4
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLK----LEQAAYKLDHY 124 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~----LE~~a~~LD~y 124 (138)
.+.|.....-|=.+..+-+.+|+.+...+++|.+|-..+.. ||++|-.||..
T Consensus 122 ~K~v~~s~~tLf~~~~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~l 177 (217)
T KOG4515|consen 122 CKSVEASMITLFEETRAHQKQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETL 177 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444455555566677788999999999999999888865 56777666654
No 224
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=32.95 E-value=1.1e+02 Score=18.24 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIP----QLEQIDQIYDSVLK 113 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~p----yl~qID~Ie~~V~~ 113 (138)
...|...+.+|+..+..+.. .-..||.|+..|..
T Consensus 8 l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 8 LEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433 33556666655543
No 225
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.93 E-value=3.9e+02 Score=24.49 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+|..|......+...++..-.=+.+-+..|.+|-..-..+...+...+.+..++-.....+---...|=.+.|.|+
T Consensus 412 ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq 487 (507)
T PF05600_consen 412 IISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ 487 (507)
T ss_pred HHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556666666666666666666777777788877777777777777666666555555554444444444444443
No 226
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=32.85 E-value=1.2e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
|...+++=.+||+++..||+-+|.++
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~E 29 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKE 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555443
No 227
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.75 E-value=2.9e+02 Score=22.97 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHhHhHHHHHHHHHHhHHHHH--------------HHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy8909 70 ITKYSDMKQITVNISNSIEEQN--------------QRYKQLIPQLEQIDQIYDSVL-KLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln--------------~ky~~l~pyl~qID~Ie~~V~-~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
...|.+|++-+..+...+..+. +-+.+|.|...-.-.+|..+. .|..++..+|.+++.+...++.
T Consensus 53 ~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~ 132 (243)
T cd07666 53 PEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKG 132 (243)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655555544433 334444444444444455443 4778888888888888776665
Q ss_pred hh
Q psy8909 135 LE 136 (138)
Q Consensus 135 le 136 (138)
+.
T Consensus 133 l~ 134 (243)
T cd07666 133 LS 134 (243)
T ss_pred HH
Confidence 43
No 228
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.72 E-value=1.3e+02 Score=19.83 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
-||+++..||+-.....+-.+.-|.+.+..+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4888888888888888888888887777654
No 229
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.69 E-value=1e+02 Score=25.46 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 88 EEQNQRYKQ----LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 88 ~~Ln~ky~~----l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
..+-.||++ |..-.++||.+|.++.+|-..+..|...-+.|=.
T Consensus 11 ~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~ 57 (234)
T cd07665 11 SKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELAL 57 (234)
T ss_pred hccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 5666678999999999999999988888777653
No 230
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.67 E-value=3.9e+02 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHH
Q psy8909 55 TQADYEVLEKMNNATITKYSDMKQI 79 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~kY~~m~~~ 79 (138)
....+.=+...|.........+.+.
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444444
No 231
>KOG0977|consensus
Probab=32.60 E-value=4.3e+02 Score=24.85 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=51.7
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
|+.-|....+-...||.=|..-...+..+++.. ......++..|+. +..-..-||++.....++|.-+.+|-.=.+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~---~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~ 123 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV---GRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELK 123 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444445677788888887777776666543 3444556666665 777777788887777777776665544333
Q ss_pred HHHHHH
Q psy8909 127 RLEAKF 132 (138)
Q Consensus 127 ~LE~K~ 132 (138)
.|..++
T Consensus 124 elr~~~ 129 (546)
T KOG0977|consen 124 ELRKKL 129 (546)
T ss_pred HHHHHH
Confidence 333333
No 232
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.57 E-value=2.2e+02 Score=26.31 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHhHhHHHHHHHHHHhHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQ 90 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~L 90 (138)
.+..+....++.+++.+..|
T Consensus 69 SALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444444
No 233
>KOG0161|consensus
Probab=32.46 E-value=6.9e+02 Score=27.21 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 44 TADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ----LIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 44 vs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~----l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
-..-++.++.-....+.=.+..|.....++.++.+....+...+.++...... ....-.+|...++.+..+++...
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777778777777777777777777777766554333 33344566666666666666666
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8909 120 KLDHYAKRLEAKFKQL 135 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~l 135 (138)
+|-.=-|.||.+.+.+
T Consensus 982 kL~kekk~lEe~~~~l 997 (1930)
T KOG0161|consen 982 KLSKEKKELEERIREL 997 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666554
No 234
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=32.13 E-value=3.1e+02 Score=23.17 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.+.|..+-..- .++.||-||=-.++-||.+...|+.|...+-
T Consensus 79 ~~~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~ 120 (311)
T PF04091_consen 79 NGSLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLR 120 (311)
T ss_dssp HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 34444444444 6899999999999999999999999887665
No 235
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=31.88 E-value=1.4e+02 Score=19.03 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=14.2
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhh
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQL 97 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l 97 (138)
++..+..-.......++.++.....|
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 236
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=31.79 E-value=2.8e+02 Score=22.48 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 81 VNISNSIEEQNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 81 ~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
..+......|+++-..|++.++.|++.|+++.
T Consensus 185 ~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~ 216 (229)
T PF11101_consen 185 QEMEAQAQELEQKAQALCDSLQQLDQQEQQLQ 216 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888999999998888764
No 237
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=31.60 E-value=2.9e+02 Score=22.63 Aligned_cols=24 Identities=4% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHH
Q psy8909 84 SNSIEEQNQRYKQLIPQLEQIDQI 107 (138)
Q Consensus 84 ~~~~~~Ln~ky~~l~pyl~qID~I 107 (138)
..+.+.++++.+.|...|.+++.|
T Consensus 171 ~~na~~fkeQ~~kLa~NL~sLN~V 194 (202)
T TIGR03513 171 AINSSSLKEEMEKMAANLTSLNEV 194 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 238
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=3e+02 Score=22.71 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHH------HHHHHHHHhHHHHHHHHHhhHHHHH--------------HHHH
Q psy8909 47 YLIGELNSTQADYEVLEKMNNATITKYSDMK------QITVNISNSIEEQNQRYKQLIPQLE--------------QIDQ 106 (138)
Q Consensus 47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~------~~a~~l~~~~~~Ln~ky~~l~pyl~--------------qID~ 106 (138)
+|+|+++....=..||..+---.+.-..-+- .+...+......+...-..++.|+- .|-+
T Consensus 97 ~veGD~q~~q~l~~Ll~~~e~D~ae~Lsr~~Gdv~A~~~~~~l~~~~~~l~~~~~~~q~~~Ae~iTEE~r~~v~~~ela~ 176 (204)
T COG3165 97 EVEGDIQLAQNLVALLGSLEPDPAELLSRYFGDVAAQSVVRALRSGSRFLKHGLKQLQRNLAEAITEEWRMAVGPLELAD 176 (204)
T ss_pred eecchHHHHHHHHHHHHhcCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCChHHHHH
Confidence 5677777777666666665443333222211 1223333333344444444444432 3555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
.=++|..++..|..|++..-+||.|.
T Consensus 177 f~~evd~lr~~~~rL~~RL~rLe~k~ 202 (204)
T COG3165 177 FAEEVDALRDAVERLEARLERLERKA 202 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777788888888887777777764
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.54 E-value=1.7e+02 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
+..+..++-+.|.++..|=.-+..++.=...|+.++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444433333333333444333
No 240
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=31.43 E-value=4.6e+02 Score=24.88 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.5
Q ss_pred chHHHH
Q psy8909 30 DPRLNE 35 (138)
Q Consensus 30 ~~~l~~ 35 (138)
..+|.+
T Consensus 178 ~~nL~r 183 (1179)
T TIGR02168 178 ERKLER 183 (1179)
T ss_pred HHHHHH
Confidence 344444
No 241
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.38 E-value=1.4e+02 Score=22.35 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+.-.+|-.+|.+...+|.+-..|=.+.|.||-.+|.-
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999999999999999999887753
No 242
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=31.29 E-value=2.4e+02 Score=21.57 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..+..|...|..++..+..+..-+.+|..--+.+|++.+.|.
T Consensus 40 ~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 40 EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888888888888877764
No 243
>smart00721 BAR BAR domain.
Probab=31.15 E-value=2.4e+02 Score=21.59 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=58.3
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHh------------HHHHHHHHHHhHHH
Q psy8909 22 SFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSD------------MKQITVNISNSIEE 89 (138)
Q Consensus 22 ~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~------------m~~~a~~l~~~~~~ 89 (138)
-|+-+.-.-..+...+..+...+..|+++ -.+.......-.++......-|.. +......+...+..
T Consensus 28 ~f~~le~~~~~~~~~~~kl~k~~~~y~q~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (239)
T smart00721 28 DFEELERRFDTTEAEIEKLQKDTKLYLQP-NPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKK 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHH
Confidence 45555555567777888888888888854 122223333333333333333322 22222222222222
Q ss_pred HHHHH--------HhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRY--------KQLI----PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 90 Ln~ky--------~~l~----pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+-+.. .-+. -+...|.+|.+.+.+++...-..|.+-.+|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~ 158 (239)
T smart00721 107 LLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLK 158 (239)
T ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22110 1122 3347788888999999999888888887765
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=4.9e+02 Score=25.06 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
|+.=|..-..+-..|+.....|...+..+......=..--..|...|..|..|+.-...=..-..+|+.|+..+.+
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 245
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.96 E-value=4.2e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+..|+..+..|++.+..+=.+.+.|..
T Consensus 196 l~~l~~~~~~l~~~~e~IP~l~~~l~~ 222 (560)
T PF06160_consen 196 LEKLKEETDELEEIMEDIPKLYKELQK 222 (560)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555555555555555444443
No 246
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.90 E-value=1.8e+02 Score=19.90 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
....-+-|.....+|+.+|.+|..||
T Consensus 52 Fd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444
No 247
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.86 E-value=1.5e+02 Score=18.98 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q psy8909 66 NNATITKY 73 (138)
Q Consensus 66 N~~~s~kY 73 (138)
|+.++.+|
T Consensus 13 NR~AAr~~ 20 (64)
T PF00170_consen 13 NREAARRS 20 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 248
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.83 E-value=1.8e+02 Score=21.17 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=5.6
Q ss_pred HhHhHHHHHHHHHHh
Q psy8909 72 KYSDMKQITVNISNS 86 (138)
Q Consensus 72 kY~~m~~~a~~l~~~ 86 (138)
|...+.+-++++..+
T Consensus 20 KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 20 KVDALQTQLNGLEED 34 (94)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333333333333333
No 249
>KOG2561|consensus
Probab=30.55 E-value=90 Score=29.06 Aligned_cols=85 Identities=22% Similarity=0.219 Sum_probs=49.1
Q ss_pred cccccccccCccccccCCcccCCCCCchHHHHHHHH---HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy8909 4 NVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATN---MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQIT 80 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a 80 (138)
|.-.+.++-||+.|+-++|-.- |..+..++.+ ..+.|+...+.|++.+.++=.+.|++ +.....|-++
T Consensus 480 ~~t~s~en~gp~ssg~~tsast----d~~m~~e~~~~i~iletv~~hae~eidS~~a~erfned~-~~~~leyldl---- 550 (568)
T KOG2561|consen 480 NATSSTENVGPESSGFGTSAST----DSEMVDETTDDIAILETVSDHAEEEIDSYIADERFNEDL-RVDALEYLDL---- 550 (568)
T ss_pred ccccCCCCCCCCcCCCCcccCC----CchhhhcCCchHHHHHhhhhHHHHHHHhhhHHhhhchhh-hhhhHhhhcC----
Confidence 4445667778888776655432 2222222222 56778888888888887776666654 2334444443
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 81 VNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 81 ~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
-|+++-+.+..|+.-+|
T Consensus 551 --------~ldqee~~l~ey~~ml~ 567 (568)
T KOG2561|consen 551 --------PLDQEEEILNEYLAMLD 567 (568)
T ss_pred --------ccchHHHHHHHHHHHhc
Confidence 24455555666665443
No 250
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=30.53 E-value=98 Score=22.78 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
++...+.+-|.+|.+||.|.+.|-
T Consensus 67 qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 67 QLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566778888999999999998885
No 251
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=30.50 E-value=1.6e+02 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q psy8909 29 HDPRLNELATNMFKKTADYLIG 50 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~ 50 (138)
...-+.-+|.+.|.-.--|+.|
T Consensus 87 ~~~~i~~las~fy~qrnmyl~g 108 (192)
T COG5374 87 AVTRIAVLASRFYAQRNMYLSG 108 (192)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999988
No 252
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.37 E-value=2e+02 Score=20.43 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 105 DQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 105 D~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
|.||++...|..-...|-+-.++.-..|
T Consensus 43 D~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 43 DHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333
No 253
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.37 E-value=1.9e+02 Score=20.23 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.=.-+..|++++..++..+..|+.=-+.|+.++++++.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888777777777777777777654
No 254
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.32 E-value=2.1e+02 Score=20.65 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.++...++.+..+.+-+.+|-.-.+.+..+++.+.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666644
No 255
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=30.30 E-value=1.7e+02 Score=19.65 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
+.|+.++++-..|.+.+...-.-+++|..+
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555555555543
No 256
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=30.28 E-value=1.2e+02 Score=25.10 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
-..|+.|+..|.+||+++...+...
T Consensus 183 r~kLd~yl~sireiE~rl~~~~~~~ 207 (302)
T PF07586_consen 183 RQKLDQYLDSIREIEKRLQQAEAWA 207 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3569999999999999997776654
No 257
>KOG3091|consensus
Probab=30.25 E-value=2.2e+02 Score=26.50 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
+-..-..+++-+-+....|...|+.|.+.|++|- -..+|.-.|-+|.|=|.+
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--k~~ad~~~KI~~~k~r~~ 386 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ--KHHADAVAKIEEAKNRHV 386 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHH
Confidence 4455566777778889999999999999999998 678899998888776544
No 258
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=30.22 E-value=2.1e+02 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
|+.|-+.-.++++.|.+|.++|..+|..-|
T Consensus 64 L~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk 93 (313)
T PF05461_consen 64 LKEFPQLKEELEEHIRKLRALADEIDKVHK 93 (313)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566788889999999999998765
No 259
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.12 E-value=2.5e+02 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
..++..-+.+++.+..+...-+..+....++.+|.+++..||+....+
T Consensus 45 ~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 45 EELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443322222233445555555555555555544433
No 260
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.06 E-value=4.7e+02 Score=24.59 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
+..++.-+......|.+-+.+++.|++.
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~ 291 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDE 291 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444555555555555555544
No 261
>smart00150 SPEC Spectrin repeats.
Probab=30.05 E-value=1.5e+02 Score=18.85 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=11.4
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDS 110 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~ 110 (138)
++...+++++....++..+-..|+.|...
T Consensus 32 ~~~~~~~~~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 32 SVEALLKKHEALEAELEAHEERVEALNEL 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333343344443333334333333
No 262
>PRK08724 fliD flagellar capping protein; Validated
Probab=30.03 E-value=5.1e+02 Score=24.96 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q psy8909 29 HDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS----DMKQITVNISNSIEEQNQRYKQLIPQLEQI 104 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~----~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI 104 (138)
++.-|......=+..|..++.|+- =|..+|+..... |. -+.....+|...+..++.+++.|+..+.++
T Consensus 572 D~~KL~~AL~~npd~V~~LF~g~~-------GlA~rL~~~L~~-~~~t~G~I~~R~~sL~~~i~~l~dqi~~Le~Rle~~ 643 (673)
T PRK08724 572 NYDMLDRQLNNNFNKLEEFFGGNT-------GFAKRVEDAIQS-MTGVTGSIRTREKSLREQNYRLNDDQVALDRRMESL 643 (673)
T ss_pred cHHHHHHHHHhCHHHHHHHhcCCc-------hHHHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566555555677777776531 233333332221 11 123334456666666666666665555554
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 105 -DQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 105 -D~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
+..-.|-+.||.++.+|.+-...|-+.
T Consensus 644 E~Ry~~QFtAMD~~msqMnsQ~s~L~s~ 671 (673)
T PRK08724 644 EKRTHAKFAAMQDATGKMQGQLGGMMNA 671 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666665555443
No 263
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.96 E-value=4.3e+02 Score=24.03 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
..++....+.+..+...+..+-..|..+++++.++++
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~ 360 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEE 360 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443
No 264
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=29.74 E-value=90 Score=19.86 Aligned_cols=16 Identities=50% Similarity=0.629 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8909 114 LEQAAYKLDHYAKRLE 129 (138)
Q Consensus 114 LE~~a~~LD~ysk~LE 129 (138)
|+....+||.-|++||
T Consensus 25 lq~Lt~kL~~vs~RLe 40 (47)
T PF10393_consen 25 LQSLTQKLDAVSKRLE 40 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444555555554
No 265
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=1e+02 Score=25.74 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+.|--+|++..+++...++||.|++.+++
T Consensus 48 Q~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 48 QRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566788999999999999999998875
No 266
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=29.32 E-value=1.1e+02 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+.+..|...|++|+.|..++=..+..+++
T Consensus 65 ~ll~eL~~~asqL~~~~~~~~e~l~~le~ 93 (127)
T PF14591_consen 65 QLLDELKSYASQLQEHYFRVRELLEDLER 93 (127)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555544443
No 267
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.06 E-value=3e+02 Score=21.98 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHH---HHHh----HhHHHHHHHHHHhHHHHHHHH----HhhHHHHHHHHHHHHHHH
Q psy8909 44 TADYLIGELNSTQADYEVLEKMNNAT---ITKY----SDMKQITVNISNSIEEQNQRY----KQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 44 vs~yl~~El~~t~~dy~LLEnmN~~~---s~kY----~~m~~~a~~l~~~~~~Ln~ky----~~l~pyl~qID~Ie~~V~ 112 (138)
--.-++.+++....+-++|..++..+ ..+| .+|-++.......+..|..++ +.....=+.|-+.+.++-
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999984 5666 444444444433333333322 222222333444444444
Q ss_pred HHHHHHHHHHHH
Q psy8909 113 KLEQAAYKLDHY 124 (138)
Q Consensus 113 ~LE~~a~~LD~y 124 (138)
++...+..|...
T Consensus 100 k~~~~l~~L~~L 111 (194)
T PF15619_consen 100 KTKDELKHLKKL 111 (194)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 268
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.99 E-value=2.3e+02 Score=20.70 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
-..|+-|+..+..||.-...|..=.+.++.+++.+
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444444555444443
No 269
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.94 E-value=2.6e+02 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
.+....++..|-+++..||+....++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544433
No 270
>smart00338 BRLZ basic region leucin zipper.
Probab=28.89 E-value=1.6e+02 Score=18.80 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=12.2
Q ss_pred HHHHHHHhHhH-HHHHHHHHHhHHHHHH
Q psy8909 66 NNATITKYSDM-KQITVNISNSIEEQNQ 92 (138)
Q Consensus 66 N~~~s~kY~~m-~~~a~~l~~~~~~Ln~ 92 (138)
|+.++.+|-.= +.-+.+|...+..|..
T Consensus 13 NR~aA~~~R~rKk~~~~~Le~~~~~L~~ 40 (65)
T smart00338 13 NREAARRSRERKKAEIEELERKVEQLEA 40 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555433 3334444444444443
No 271
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.80 E-value=4.1e+02 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 113 KLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE~K~ 132 (138)
.+|+.+..|+.=-++|+.++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 272
>KOG4360|consensus
Probab=28.74 E-value=5.1e+02 Score=24.55 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=63.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 24 EPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 24 ~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
|++.+.-+.+..=-..+=.++..|.+-.+....-+=.+..-+-+.-.---..+......|....++++..|++....+.|
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333444456666666555554433333222222211112234455566788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHhhh
Q psy8909 104 IDQIYDSVLKLEQAAYKLD----HYA---KRLEAKFKQLE 136 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD----~ys---k~LE~K~k~le 136 (138)
|-+.++++..+=-=+..|| .|. .+|++..+.+|
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988776644344444 333 34555555544
No 273
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.68 E-value=49 Score=23.07 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 93 RYKQLIPQLEQIDQ----IYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 93 ky~~l~pyl~qID~----Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
..+.|+..+.+|.. +|+.+...+..+.-+...-+.|+
T Consensus 12 al~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~ 52 (80)
T PRK14067 12 QLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLA 52 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444432 56666666666655555555554
No 274
>PRK13677 hypothetical protein; Provisional
Probab=28.56 E-value=2.1e+02 Score=21.91 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
+..|.++..+..++..-+++|++.-..-+.-.+-=..|=+.+..||.+|.
T Consensus 63 ~~~y~ev~Ei~~~l~~vidELd~i~~~~~~e~d~K~kiL~dLrHLE~Vv~ 112 (125)
T PRK13677 63 GQGYKEVQEISPNLRYVIDELDQICQRDREEVDLKRKILDDLRHLESVVA 112 (125)
T ss_pred CccceehhcccHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999998888887665444433333445556667777663
No 275
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=28.49 E-value=3.4e+02 Score=22.43 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH----
Q psy8909 29 HDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI---- 104 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI---- 104 (138)
.-+.|.++..+ ++.+..=+...+.....+++-|..+-..-+..=.++.+.+.++..-+..|.++-..|...|..+
T Consensus 29 rG~~lg~~l~~-l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a 107 (267)
T PF11887_consen 29 RGEQLGETLDD-LNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLA 107 (267)
T ss_pred cchhHHHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444443332 2333333445555566666666666666666666777777777777777777777776666655
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 105 -----------DQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 105 -----------D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
+.+-.-|..|..++..|..|+-.|.-=|..
T Consensus 108 ~~~~~~l~~n~~~L~~~~~~L~p~~~lL~~~~p~l~c~L~~ 148 (267)
T PF11887_consen 108 DTGTDFLADNRDNLIRALDDLRPTTDLLAKYSPELPCTLQG 148 (267)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 344455667777778888887777654443
No 276
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.49 E-value=1.8e+02 Score=24.19 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
..|.+...++.....-+...-..|..--..||.++..|..++.++.+|=
T Consensus 33 ~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~ 81 (243)
T cd07666 33 SRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIY 81 (243)
T ss_pred hhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455555555555444566667788888889999999999999998775
No 277
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=28.42 E-value=76 Score=20.31 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHH-HHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIPQLE-QIDQIYDSVLKL 114 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~pyl~-qID~Ie~~V~~L 114 (138)
..-+...+..++++|.+++.|+. .+.-=++.+.+|
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~L 63 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERL 63 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHH
Confidence 45778889999999999999994 444444445444
No 278
>PRK04654 sec-independent translocase; Provisional
Probab=28.38 E-value=3.5e+02 Score=22.48 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
.+++...++...++++++.-..+.+|..+
T Consensus 69 ~i~~~~~~lk~~~~el~q~a~~~~~~~~~ 97 (214)
T PRK04654 69 SLREAEDQLRNTQQQVEQGARALHDDVSR 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 45566666666666666666666655543
No 279
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=28.30 E-value=1.2e+02 Score=22.50 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
-.-+++.+|++++.+|.+.-..|+.+...++.
T Consensus 82 ~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 82 ALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777888888888888777777766653
No 280
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=28.26 E-value=1.8e+02 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQ-AAYKLDHYAKR 127 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~-~a~~LD~ysk~ 127 (138)
.-++++++||++|..|=+ +...|..+++.
T Consensus 3 eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~ 32 (117)
T PF10280_consen 3 ERLQQLNEIDKKIVSLLQHAGQAIQELSNP 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457888889888877544 44557777764
No 281
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.81 E-value=51 Score=22.65 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
+|+.+..+|..+.-+-..-++|
T Consensus 29 Leesl~~ye~G~~L~k~c~~~L 50 (75)
T PRK14064 29 LEDSLDMYQKGIELTKLCQDKL 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554443333333
No 282
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=27.68 E-value=3.1e+02 Score=24.15 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
|++|++.||..=+-=.++++...+|+..+++
T Consensus 199 l~~~~~~id~H~~lr~~~~~~~~~L~~~a~Q 229 (377)
T PF14728_consen 199 LQEYFEIIDQHFELRQELKELEEELDERAQQ 229 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888777666666666677766654
No 283
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=27.39 E-value=1.1e+02 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~ 117 (138)
|..+-++|+.||..+.-||+-
T Consensus 23 L~~~e~~Lq~~E~~l~iLEaK 43 (148)
T PF10152_consen 23 LSDMEQRLQRLEATLNILEAK 43 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555444443
No 284
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.34 E-value=3.3e+02 Score=21.95 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=33.1
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
++.|++.....+ .+++......-.+|.+........+.+|++.+..|. +++....+++..|++-.
T Consensus 98 le~el~~l~~~l---~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~---~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 98 LENQVKTLTDKL---NNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLK---NQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455555555333 333344445555556655566666666666655553 33444445555544433
No 285
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.05 E-value=6.5e+02 Score=25.19 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=19.6
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHH
Q psy8909 50 GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYK 95 (138)
Q Consensus 50 ~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~ 95 (138)
.+++...+++.-++.--.....+..+..+....+...+..+.....
T Consensus 239 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 284 (1163)
T COG1196 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433333
No 286
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=26.95 E-value=5.5e+02 Score=24.34 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhH------------------HHHHHHHHhhHHHHHHHH
Q psy8909 44 TADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSI------------------EEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 44 vs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~------------------~~Ln~ky~~l~pyl~qID 105 (138)
+..=|.-++..+.+-+.-..+|...=-..-.........|.... .+++.+-++++.||--+.
T Consensus 460 I~~SIdkDi~tAnDGl~YynKM~elYK~~L~aVn~~Ik~ie~~~~~e~~kK~~~~~~~~~~~~q~~~~k~E~~KYLPFLn 539 (574)
T PF07462_consen 460 IGASIDKDIATANDGLAYYNKMGELYKKHLDAVNEQIKEIEDEINDEEEKKIPSEPPKTAPKNQLNAKKEELEKYLPFLN 539 (574)
T ss_pred HHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccCCcccccchhhhhHHHHHHhhhhhHHH
Confidence 44445556666666666666666554444444444444343332 347777788888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.|.. .-|.+|++.+.|+..|..++.+-+
T Consensus 540 siqk---~YesLv~kv~~yt~nLk~~inNcq 567 (574)
T PF07462_consen 540 SIQK---EYESLVNKVNTYTENLKKFINNCQ 567 (574)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7775 457789999999999999887643
No 287
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.74 E-value=2.4e+02 Score=20.09 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 93 RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 93 ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
....++.|-++|+.|..++..|......++.-...|
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777777766655444
No 288
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.63 E-value=5.4e+02 Score=24.18 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=41.3
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHH
Q psy8909 50 GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ-----------IYDSVLKLEQAA 118 (138)
Q Consensus 50 ~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~-----------Ie~~V~~LE~~a 118 (138)
.+++....+..-++.=-..-...+..|.............+.+.+.-...-+.-+.+ |+..-.+|..++
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~ 414 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELA 414 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444433333333333 344444555566
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy8909 119 YKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 119 ~~LD~ysk~LE~K~k~le 136 (138)
.+.+.+-+-|..+++.++
T Consensus 415 ~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 415 QQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 677777777777777665
No 289
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.60 E-value=2.3e+02 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=18.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
..+..+-+++..+...+.+++.+...|+...
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 13 QQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666666666666666666554
No 290
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=26.55 E-value=1.7e+02 Score=18.43 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~y 124 (138)
.+..-+..|...+.+|.+|
T Consensus 72 ~~~~~~~~l~~~l~~l~~~ 90 (90)
T PF01627_consen 72 ELEQLLDELEAMLEQLRQW 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3444444444444444433
No 291
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=26.53 E-value=3.6e+02 Score=22.06 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=11.9
Q ss_pred ccCCcccCCCCCchHHHHHHHHH
Q psy8909 18 TSTSSFEPMISHDPRLNELATNM 40 (138)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~la~~m 40 (138)
||.++|+++-....+=...|.++
T Consensus 2 ~~~~G~~~l~~r~~~g~~~c~el 24 (242)
T cd07671 2 TLNTGYEILLQRLLDGRKMCKDV 24 (242)
T ss_pred CcccchHHHHHHHHHHHHHHHHH
Confidence 67777777544333333334433
No 292
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.26 E-value=70 Score=27.57 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.8
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
+.|..+.++||+||.++-+|
T Consensus 3 ~~L~~lR~~ID~iD~~iv~L 22 (374)
T PRK11199 3 AELTALRDQIDEVDKQLLEL 22 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998776
No 293
>PRK06034 hypothetical protein; Provisional
Probab=26.26 E-value=63 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.234 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..|....++||+||.++-+|
T Consensus 9 ~~L~eLR~eID~ID~eLl~L 28 (279)
T PRK06034 9 PSLAELRWEIDAIDEELHQL 28 (279)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 35778899999999998776
No 294
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.18 E-value=4e+02 Score=22.51 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHH
Q psy8909 54 STQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQN 91 (138)
Q Consensus 54 ~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln 91 (138)
....+. .|.+.++..-.++..+.+...++.+.+.+..
T Consensus 48 ~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 48 RRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 4444444444444444444444444444433
No 295
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.10 E-value=4.5e+02 Score=23.05 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=18.9
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy8909 46 DYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNIS 84 (138)
Q Consensus 46 ~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~ 84 (138)
+||+.+++....+|+-...==..+..+|......+....
T Consensus 262 k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 262 KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 466666666666665444333333344444433333333
No 296
>PRK10869 recombination and repair protein; Provisional
Probab=26.04 E-value=5.2e+02 Score=23.71 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
...+|-.+.+.+.++.+.+...-..+..+++++.+++
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~ 354 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHH 354 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444444444444433
No 297
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=25.99 E-value=4.9e+02 Score=23.46 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy8909 55 TQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~L 114 (138)
=.+|.+|+.+| ..+...|.+|.+.=.+|-..-.--..-+++|...|+.|.+|=++-+.|
T Consensus 343 rAEDaRl~~d~-~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~vn~~iq~a~~L 401 (431)
T PF14782_consen 343 RAEDARLMGDM-KNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKEVNQIIQKASRL 401 (431)
T ss_pred HhhhHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 35788888887 567788999988888888877777777888889999999888777666
No 298
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=25.83 E-value=1.4e+02 Score=21.03 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~ 112 (138)
+.|..|+.+-.+=...++ +.-.+...||..+|.+||.+.+
T Consensus 35 g~~vnmrsIQEnGe~Kie--~kiee~v~plreki~dle~Sft 74 (78)
T PF11803_consen 35 GNYVNMRSIQENGELKIE--QKIEEAVAPLREKIRDLEKSFT 74 (78)
T ss_pred HhhcCHHHHHhccchhHH--HHHHHHHhHHHHHHHHHHHHHh
Confidence 456666555554444444 2223346777777777776654
No 299
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=25.80 E-value=82 Score=22.04 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQA 117 (138)
Q Consensus 107 Ie~~V~~LE~~ 117 (138)
+|+.+..+|.-
T Consensus 33 Le~sl~~~erG 43 (81)
T COG1722 33 LEEALKEFERG 43 (81)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 300
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.78 E-value=3.2e+02 Score=21.30 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHH-HHhHHHHHHHHHh-hHHHHHHHHHHH
Q psy8909 31 PRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNI-SNSIEEQNQRYKQ-LIPQLEQIDQIY 108 (138)
Q Consensus 31 ~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l-~~~~~~Ln~ky~~-l~pyl~qID~Ie 108 (138)
.-|.+...+|=..+.+. ...+.......+.|++=-......-.++..-|.-. ...-++|-..... ...|-.++..++
T Consensus 26 ~~l~q~ird~e~~l~~a-~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKA-RQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555443 23344444555555554444444444444333221 2222233222211 334444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.++..++..+.+|..-..+|+.|+..++
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544
No 301
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=25.46 E-value=2.8e+02 Score=20.51 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHhhhhHHHH-------HHHHHHHHHH------------HHHhHhHHHHH-HHHHHhHHH
Q psy8909 30 DPRLNELATNMFKKTADYLIGELNSTQADY-------EVLEKMNNAT------------ITKYSDMKQIT-VNISNSIEE 89 (138)
Q Consensus 30 ~~~l~~la~~mf~kvs~yl~~El~~t~~dy-------~LLEnmN~~~------------s~kY~~m~~~a-~~l~~~~~~ 89 (138)
-..+...+.++...+..|+++--......- .|=..|.... ..+|...-+.. .........
T Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 114 (229)
T PF03114_consen 35 FKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQ 114 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777765444444433 3333343322 22333322222 122222333
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRY-KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 90 Ln~ky-~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
++... .-+..++..+..|.+.+.+++...-..|.|..+++.
T Consensus 115 ~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 115 IESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 448889999999999999999999999999988874
No 302
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=25.43 E-value=2e+02 Score=23.62 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
|..-.+.|+.+|.++.+|=..+..|...-+.|=
T Consensus 24 F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela 56 (234)
T cd07664 24 FEEKQQQFENLDQQLRKLHASVESLVCHRKELS 56 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888888887777777766654
No 303
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=25.42 E-value=2.5e+02 Score=19.92 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=38.7
Q ss_pred hHhHHHHHHHHHHhHHHHHHHH-----HhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRY-----KQLIPQL-EQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky-----~~l~pyl-~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
...+.+....+......+.... .-|..|+ ..|..+.+.+..++..-...|.+..+++.
T Consensus 56 l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~ 119 (194)
T cd07307 56 LEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKK 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444433 2366777 77888888888888888888888877764
No 304
>PRK05589 peptide chain release factor 2; Provisional
Probab=25.37 E-value=4.4e+02 Score=22.96 Aligned_cols=12 Identities=8% Similarity=-0.033 Sum_probs=5.1
Q ss_pred HHhHhHHHHHHH
Q psy8909 71 TKYSDMKQITVN 82 (138)
Q Consensus 71 ~kY~~m~~~a~~ 82 (138)
.+|..++.++..
T Consensus 18 ke~~~l~~~v~~ 29 (325)
T PRK05589 18 SEEKYLKDKLDK 29 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 305
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=25.32 E-value=4.3e+02 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q psy8909 38 TNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 38 ~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 92 (138)
..+|.++..++.++-... ...+.++.+.+..+......+..
T Consensus 173 ~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~ave~ia~~~~~~~~ 213 (276)
T PF05929_consen 173 KSLFSKVKALFKKKEASD--------------DEQFADLQQAVEAIAEQQQELEE 213 (276)
T ss_pred hhhhHHhhhhhcCCcCcc--------------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 455666666655544433 44455555555555555554433
No 306
>KOG4593|consensus
Probab=25.22 E-value=5.5e+02 Score=25.00 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=3.2
Q ss_pred cCcccccc
Q psy8909 12 KMTSLSTS 19 (138)
Q Consensus 12 ~~~~~~~~ 19 (138)
+-+|++.+
T Consensus 351 ~~~t~~s~ 358 (716)
T KOG4593|consen 351 KNSTVTSP 358 (716)
T ss_pred ccccccCc
Confidence 33444433
No 307
>KOG4117|consensus
Probab=25.17 E-value=2.4e+02 Score=19.52 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
.|.+.+.-+-.-+++...|+..+ ......||+.-..+..||.-+.-|
T Consensus 13 Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDL 60 (73)
T KOG4117|consen 13 NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADL 60 (73)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34445555555666666666664 344566677777777777766554
No 308
>PRK14596 peptide deformylase; Provisional
Probab=25.07 E-value=77 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=21.2
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|-|...| +|+.+.+++|++|+.+||..+-.
T Consensus 11 pvLr~~a---~pV~~~~~~l~~li~dM~eTM~~ 40 (199)
T PRK14596 11 PVLRRKA---RPVQDFDQGIRRLAEDMLETMFE 40 (199)
T ss_pred hHHhCcC---cccCCCCHHHHHHHHHHHHHHHh
Confidence 4455444 34555679999999999988754
No 309
>KOG0810|consensus
Probab=25.06 E-value=1.2e+02 Score=25.97 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
|+.++.+|..|...+.+|+..+.+|+.+-
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h 63 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLH 63 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555555555554444444443
No 310
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.05 E-value=3.4e+02 Score=21.25 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q psy8909 61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 92 (138)
=|++.|.+...++.+|.....+++...+.+-.
T Consensus 23 ~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~ 54 (187)
T cd07629 23 GMEKVNRRITKRLGDLAEDMADLGGRFNAFSL 54 (187)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888887776666666555554443
No 311
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.87 E-value=4.7e+02 Score=22.81 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=35.7
Q ss_pred ccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy8909 16 LSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVL 62 (138)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LL 62 (138)
.+|.|-+=|.+-|+-.++.+-..++...+...++.-+......++-|
T Consensus 248 a~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L 294 (438)
T PRK00286 248 APTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQL 294 (438)
T ss_pred CCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777888888888888888888888888888777666666544
No 312
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.79 E-value=64 Score=22.18 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+|+.+...+..+.-+....+.|.
T Consensus 28 Leesl~lyeeG~~L~k~C~~~L~ 50 (76)
T PRK14063 28 LEEAISYFKEGMELSKLCDEKLK 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655555555443
No 313
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=24.76 E-value=4.9e+02 Score=23.01 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy8909 32 RLNELATNMFKKTADYLIGELNSTQADYEVLE 63 (138)
Q Consensus 32 ~l~~la~~mf~kvs~yl~~El~~t~~dy~LLE 63 (138)
.|.+|.++ |..+..|+.-+ .....|.-|+
T Consensus 8 ~~~~~~~~-~~~~~~~~~l~--~~~~~~~~l~ 36 (367)
T PRK00578 8 RLKDLDEK-LENIRGVLDVD--ALKERLEELE 36 (367)
T ss_pred HHHHHHHH-HHHHHhhCCHH--HHHHHHHHHH
Confidence 45554443 35566666543 2334444444
No 314
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.72 E-value=4.7e+02 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
-..+..-+++|..++..+..||.++..-+.+.|--+.++.
T Consensus 264 e~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 264 EWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3456667789999999999999999999999876555543
No 315
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.39 E-value=5.9e+02 Score=23.82 Aligned_cols=61 Identities=10% Similarity=0.209 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 56 QADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 56 ~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
.+.++-|..=|+.+-.+-.++.-.-.-|.+.+++|.-+...=+-+++.|+.+...|.+|=.
T Consensus 316 NEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIe 376 (527)
T PF15066_consen 316 NEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIE 376 (527)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4556667777889999999999999999999999999999989999999999999888744
No 316
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.39 E-value=2.6e+02 Score=19.78 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAK 126 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk 126 (138)
-.-+++.+|++++..|..+-..|+.+..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 83 LLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888877776653
No 317
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=24.25 E-value=5.1e+02 Score=24.66 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQ-IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~q-ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
...+|...+.+++.+.+.++..+++ -+.+-.|-+.||.++.+|.+-+..|..-++.
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~~~ 657 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFNKS 657 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555554444 2344555566666666666666666555544
No 318
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=24.21 E-value=3.7e+02 Score=21.40 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8909 57 ADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 57 ~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~ 130 (138)
.++.-+++.|.+...++.++.....++ .+-++....+|..+ ..||.+...+|.|+..++.
T Consensus 28 ~~l~~iekv~~Rl~~r~~~l~~~~~e~--------------g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~ 88 (201)
T cd07622 28 TNLNNLLKVRARLAERLYGVYKIHANY--------------GRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDN 88 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777777777765554444443 34444444444333 2455666666666666654
No 319
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=24.20 E-value=2.2e+02 Score=18.80 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
..++.+..||.-+.-|=+|.--|..|
T Consensus 26 ~~~~~i~RLE~H~ETlRk~mv~L~kK 51 (57)
T PF02346_consen 26 ENSEAIKRLEHHIETLRKYMVILAKK 51 (57)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555544
No 320
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=24.15 E-value=1.4e+02 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
..+..+.-|+.||..++.++.. |.|+..+=..+
T Consensus 10 ~ll~RL~RIeGQv~gI~~Miee-~~~C~dIl~Ql 42 (90)
T PRK15039 10 KLKARASKIQGQVVALKKMLDE-PHECAAVLQQI 42 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3455555566666666655543 44444443333
No 321
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.14 E-value=2.6e+02 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
.-+++.+|++++..|+.+...|+...
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 80 LREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888887777654
No 322
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=24.13 E-value=1.6e+02 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=13.1
Q ss_pred HhHhHHHHHHHHHHhHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQR 93 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~k 93 (138)
.|.++..-...|...+++|+..
T Consensus 4 ~~l~fe~~i~~l~~~i~~l~~~ 25 (319)
T PRK05724 4 NYLDFEKPIAELEAKIEELRAV 25 (319)
T ss_pred chhhhhhHHHHHHHHHHHHHhh
Confidence 4556666666666666666554
No 323
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.09 E-value=1.4e+02 Score=21.51 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
..++.+|++++..|+.+...|+......+
T Consensus 83 ~~~~~~l~~~i~~L~~~~~~l~~~~~~~~ 111 (126)
T cd04783 83 EQKLAEVDEKIADLQRMRASLQELVSQCA 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35888888888888888888887765443
No 324
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.07 E-value=3.2e+02 Score=20.63 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
.-|.+|...|..+-.+|.-||.=..+||.
T Consensus 96 ~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 96 EDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666666666666654
No 325
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=24.05 E-value=5.6e+02 Score=23.45 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHh---HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q psy8909 60 EVLEKMNNATITKY---SDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQI------------YDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 60 ~LLEnmN~~~s~kY---~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~I------------e~~V~~LE~~a~~LD~y 124 (138)
+.|..|+....... .++.....+|......|.+-+..|-.+|+....- |.=|.=|+..|..|+.+
T Consensus 124 ~~L~~l~~l~~~~~~~~~~v~~~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~~~ 203 (494)
T TIGR02677 124 QRLRELLALIDQPRPDAREVHRTLRELYGSFESLADNAQAFMADLQRHRPLEVADYEAFLAYKDRLIAYLQDFIVRLVDR 203 (494)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333 3444444444444444444444444444433221 22256677778888888
Q ss_pred HHHHHHHHHhhh
Q psy8909 125 AKRLEAKFKQLE 136 (138)
Q Consensus 125 sk~LE~K~k~le 136 (138)
+-+++.-++.++
T Consensus 204 ~~~I~~~l~~l~ 215 (494)
T TIGR02677 204 SEQIAQLLRVLA 215 (494)
T ss_pred HHHHHHHHHhcc
Confidence 888888887765
No 326
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.04 E-value=4.9e+02 Score=22.79 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=38.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHH----HHHHhHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHH
Q psy8909 51 ELNSTQADYEVLEKMNNATITKYSDMKQITV----NISNSIEEQNQRYKQLIPQ--------LEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 51 El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~----~l~~~~~~Ln~ky~~l~py--------l~qID~Ie~~V~~LE~~a 118 (138)
|.+.-..||+=|+.-++.-..|-.++...-. .|.+.-.+|++.-..++.. .+.|+++++++.+-....
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhH
Confidence 4444556666666666665555555544433 3333333344444444443 455566666666555555
Q ss_pred HHHHHH
Q psy8909 119 YKLDHY 124 (138)
Q Consensus 119 ~~LD~y 124 (138)
..+|++
T Consensus 85 ~DmEa~ 90 (330)
T PF07851_consen 85 FDMEAF 90 (330)
T ss_pred HHHHhh
Confidence 555544
No 327
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.99 E-value=67 Score=22.19 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+|+.+..+|..+.-+-...+.|+
T Consensus 29 Leesl~lyeeG~~L~k~C~~~L~ 51 (76)
T PRK14068 29 LEESLDLYQRGMKLSAACDTTLK 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655554444444
No 328
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=23.98 E-value=85 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|...+... .+.++++.+++.+|+..+-.
T Consensus 10 p~Lr~~~~~V---~~~~~~~~~l~~dM~~tm~~ 39 (161)
T TIGR00079 10 DVLRTIAKPV---EKVDDKIRQQLDDMIETMYA 39 (161)
T ss_pred hHHhcccccc---CCCCHHHHHHHHHHHHHHHh
Confidence 4455444444 34579999999999988754
No 329
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=23.95 E-value=2.4e+02 Score=19.17 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=31.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 88 EEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 88 ~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
..+...+.++...-+.|.++..+.-++|-.+..|....-+++-.+
T Consensus 23 ~~l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~v 67 (80)
T PF11488_consen 23 SKLESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNV 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhH
Confidence 346677777777777777777777777777777777766666544
No 330
>KOG3366|consensus
Probab=23.94 E-value=3.8e+02 Score=21.50 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 57 ADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQR--------YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 57 ~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~k--------y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
+.-.|.+++-.++...+..++..-.....-+..|-+. |...-+.-.-||.|+++...|.-+-.-.|.|+++.
T Consensus 13 dWa~lae~v~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~v~~~~~ky~~~v 92 (172)
T KOG3366|consen 13 DWAKLAERVPPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKPVPVDEDKYLKEV 92 (172)
T ss_pred cHHHHHHHcCHHHHHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccccCCCHHHHHHHh
Confidence 3444555555555555555555554444444444321 33333556666666666666665444556666655
Q ss_pred HHHHHh
Q psy8909 129 EAKFKQ 134 (138)
Q Consensus 129 E~K~k~ 134 (138)
.+.++.
T Consensus 93 da~~k~ 98 (172)
T KOG3366|consen 93 DAEEKA 98 (172)
T ss_pred hHHHHH
Confidence 555544
No 331
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=23.83 E-value=98 Score=21.46 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~ 112 (138)
++...++.+|+||++|.
T Consensus 13 d~~~i~~rLd~iEeKVE 29 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVE 29 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888887763
No 332
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=23.69 E-value=1.9e+02 Score=17.96 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQL 101 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl 101 (138)
|..|.+.+..+.....+++.....+..-+
T Consensus 6 ~~~l~~~a~~~~~~~~~l~~~~~~l~~~~ 34 (86)
T PF06013_consen 6 PEQLRAAAQQLQAQADELQSQLQQLESSI 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 333
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.59 E-value=68 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 107 Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+|+.+..+|..+.-+-...+.|+
T Consensus 27 Leesl~lyeeG~~L~k~C~~~L~ 49 (75)
T PRK14066 27 LDDSLKAFEEGVKHAAFCSKKLD 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555544
No 334
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=23.58 E-value=6.6e+02 Score=24.06 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY-------------AKRLEAKFKQL 135 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y-------------sk~LE~K~k~l 135 (138)
...+|..|..-+..|.+.+.+ .|... =|..-++++......+|..+.+|..- ++++|.+.+..
T Consensus 247 L~~k~~~L~~e~~~LK~ELie--dRW~~--vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~ 322 (683)
T PF08580_consen 247 LEKKWKKLEKEAESLKKELIE--DRWNI--VFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKK 322 (683)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hhHHH--HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence 444555555555555444332 22222 24445666666666677766666655 78888777653
No 335
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.57 E-value=4e+02 Score=21.52 Aligned_cols=48 Identities=4% Similarity=0.039 Sum_probs=24.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 66 NNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 66 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
......++....+..++|.....+|++... ..-++++.++.+++.+..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~---~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLI---VAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555553333 334455555555555544
No 336
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=23.47 E-value=1.6e+02 Score=22.53 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
.+..|.++..+..++..-+++|++.-..=+.-.+-=..|=..+..||.+|.
T Consensus 62 g~~~y~~v~Eis~~L~~vieELdqi~~~~~~~~d~K~kiL~dL~HLE~Vv~ 112 (125)
T PF11944_consen 62 GSQQYKEVSEISPNLRYVIEELDQITGREQAEVDLKQKILDDLRHLEKVVN 112 (125)
T ss_pred CCccceehhhccHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999887665433333333344455666777653
No 337
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.42 E-value=4.3e+02 Score=21.83 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=24.1
Q ss_pred ccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy8909 18 TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVL 62 (138)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LL 62 (138)
|.|-+=|.+-|+..++.+-..++...+...++..+......++.+
T Consensus 133 TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l 177 (319)
T PF02601_consen 133 TPTAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQL 177 (319)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555556666666666655555554444433
No 338
>PHA01750 hypothetical protein
Probab=23.39 E-value=2.6e+02 Score=19.40 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8909 33 LNELATNMFKKTADYLI 49 (138)
Q Consensus 33 l~~la~~mf~kvs~yl~ 49 (138)
++..++-+|.-++-|+.
T Consensus 11 mSTtaTtlFaIiqlYlK 27 (75)
T PHA01750 11 MSTTATTLFAIIQLYLK 27 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666665553
No 339
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=23.31 E-value=2.6e+02 Score=21.18 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 108 YDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 108 e~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
|+++..+|.-..+|+.=..-||+|+.++
T Consensus 20 E~kL~~~e~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 20 EEKLSDMEQRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666666666666667777777654
No 340
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=23.22 E-value=1.5e+02 Score=21.94 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~ 116 (138)
|.+|..+.++.|+++.+
T Consensus 64 y~~Q~k~Ye~a~~~~~~ 80 (104)
T PF11460_consen 64 YMQQRKDYEEAVDQLTN 80 (104)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 55666666666655543
No 341
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=23.19 E-value=2.5e+02 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
...+++|+.+.......+.+||...++|+.=+...
T Consensus 28 r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~ 62 (236)
T PF12269_consen 28 RKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARA 62 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666554443
No 342
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=23.13 E-value=2.3e+02 Score=19.04 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=36.4
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV--LKLEQAAYKLDHYAKR 127 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V--~~LE~~a~~LD~ysk~ 127 (138)
|..+..++..|+..-.+|- ..|.-.-..|+.|+.+- ...|++...|..|..+
T Consensus 4 ~~~l~~ia~~lG~dW~~LA---r~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r 57 (84)
T cd08317 4 DIRLADISNLLGSDWPQLA---RELGVSETDIDLIKAENPNSLAQQAQAMLKLWLER 57 (84)
T ss_pred cchHHHHHHHHhhHHHHHH---HHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 4567778888876665554 34444446788888764 3469999999999875
No 343
>KOG1760|consensus
Probab=23.12 E-value=3.6e+02 Score=20.81 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 111 VLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 111 V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
-+++|.+..++|+.-+.|-+||.
T Consensus 101 es~~e~I~~~m~~LK~~LYaKFg 123 (131)
T KOG1760|consen 101 ESELESISARMDELKKVLYAKFG 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777888888888988886
No 344
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.89 E-value=1.8e+02 Score=25.25 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=21.9
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~L 114 (138)
.|.++..-...|...+.+|+.....- ...-.+|..+++++.++
T Consensus 4 ~~~~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 47 (316)
T TIGR00513 4 NYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVEL 47 (316)
T ss_pred chhhhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHH
Confidence 35566666666666666666543321 11234455555555444
No 345
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=22.78 E-value=1.8e+02 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
-..+++++|++++..|++....|+.+
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 75 ILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888777654
No 346
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.76 E-value=1e+02 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~ 112 (138)
.+...++.+|+||++|.
T Consensus 16 d~~~i~~rLD~iEeKVE 32 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVE 32 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666778888887763
No 347
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.60 E-value=4.4e+02 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNN 67 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~ 67 (138)
|.++..-|..++...-.+-++|+...+
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~k 39 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRK 39 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455444444455554433
No 348
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.60 E-value=90 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLE----QAAYKLDHYAK 126 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE----~~a~~LD~ysk 126 (138)
++|..+..+||+||.++-+|= .+|.++-+|-+
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~ 39 (360)
T PRK12595 4 EELEQLRKEIDEINLQLLELLSKRGELVQEIGEEKT 39 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999988773 35555555543
No 349
>PRK14598 peptide deformylase; Provisional
Probab=22.59 E-value=91 Score=24.88 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=21.2
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|...|- |+.+.++++++|+++||..+-.
T Consensus 11 pvLr~~~~---~V~~~~~~l~~li~dM~~tm~~ 40 (187)
T PRK14598 11 EVLRQKAK---PLKGVDAEIEELIASMFESMYN 40 (187)
T ss_pred hHHhccCc---ccCCCCHHHHHHHHHHHHHHHh
Confidence 44554443 4455689999999999988743
No 350
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=22.51 E-value=5.6e+02 Score=22.89 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 64 KMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV-LKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 64 nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V-~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
.|=+.....=..+.....+|.+++..+.+.++... ..+..++.++ .+|++...+.|.-...+|++|..+
T Consensus 327 ~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~---~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~ 396 (473)
T PF14643_consen 327 KLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHR---KKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIA 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333334455666666666666666665544 3333344443 567777777777777777777654
No 351
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.47 E-value=4.7e+02 Score=21.94 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI 104 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI 104 (138)
+..+|..+.+.-..+...+..|+.+-++-+..|+..
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544444444
No 352
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.42 E-value=2.8e+02 Score=19.31 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
+.+..+-++|..+..++..++..+.++-
T Consensus 91 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 91 EQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666666666665543
No 353
>PLN02939 transferase, transferring glycosyl groups
Probab=22.40 E-value=4.8e+02 Score=26.29 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=46.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHhhh
Q psy8909 64 KMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA-----AYKLDHYAKR-LEAKFKQLE 136 (138)
Q Consensus 64 nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~-----a~~LD~ysk~-LE~K~k~le 136 (138)
.+-+....+|.-+-+.+.++..-+.....+-+.----++|=+++.++|++||+. ++++-.|.-+ |-.|+|.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (977)
T PLN02939 286 DVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLE 364 (977)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777766666666677777888888888754 4454444333 224555444
No 354
>PRK12765 flagellar capping protein; Provisional
Probab=22.37 E-value=2.1e+02 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 81 VNISNSIEEQNQRYKQLIPQLEQIDQI-YDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 81 ~~l~~~~~~Ln~ky~~l~pyl~qID~I-e~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
.++...+++|..+++.++.-++..-.. -.|-..|+.++.+|..-...|..-|
T Consensus 535 ~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~ 587 (595)
T PRK12765 535 ESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMI 587 (595)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444443333332211 2233444444444444444444433
No 355
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.24 E-value=2.1e+02 Score=20.82 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
.-+++.+|+.++.+|+.+...|+.....
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVDLRGR 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888888888888776543
No 356
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.21 E-value=4.8e+02 Score=24.10 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=14.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
+++....+++.++++++.++++....|+.|
T Consensus 100 ~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 100 KEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444455555555555555555555544
No 357
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=22.18 E-value=1.9e+02 Score=20.94 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHhh---HhhhhHHHHHHHHHHHHHH
Q psy8909 31 PRLNELATNMFKKTADYLIG---ELNSTQADYEVLEKMNNAT 69 (138)
Q Consensus 31 ~~l~~la~~mf~kvs~yl~~---El~~t~~dy~LLEnmN~~~ 69 (138)
++--.++...|..+.+|++| +=+.+..+.++++-+|.--
T Consensus 64 ~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL 105 (109)
T PF08454_consen 64 SDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLL 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHH
Confidence 44556788899999999999 8888888999998887643
No 358
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.02 E-value=3.8e+02 Score=20.80 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=42.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA-AYKLDHYAK 126 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~-a~~LD~ysk 126 (138)
+..++..-..-+.-|+..+..-..+..++.....+..+.++.|+.-+..|+- +...+|+++.+|+.= ..-++.|..
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l---~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL---QLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666667777777777777777777777777755555543 556666777776642 233355543
No 359
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=22.01 E-value=3.9e+02 Score=20.93 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=43.1
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
...|.++...|..|.+-+..+=.....=.-||+-|.+|-..+-+|=++|+.+=.
T Consensus 88 ~~~~~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdAvn~v~~ 141 (154)
T PF06840_consen 88 EPEFQELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDAVNEVFK 141 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877777777778999999999999999998887643
No 360
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=22.00 E-value=3.8e+02 Score=23.43 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=7.6
Q ss_pred CCCchHHHHHHHH
Q psy8909 27 ISHDPRLNELATN 39 (138)
Q Consensus 27 ~~~~~~l~~la~~ 39 (138)
..++|++......
T Consensus 179 f~~ipe~~~a~~~ 191 (307)
T PF15112_consen 179 FRNIPEIVAAGSR 191 (307)
T ss_pred hccChHHHHHHHH
Confidence 3467776665543
No 361
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.77 E-value=3.8e+02 Score=20.69 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhHHHHH----HHHHh-hHHHHHHHHHHHHHHHHH
Q psy8909 76 MKQITVNISNSIEEQN----QRYKQ-LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln----~ky~~-l~pyl~qID~Ie~~V~~L 114 (138)
+...+..|...+.++. +.|.. ++.|.++|+++++.+.+.
T Consensus 117 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 160 (203)
T cd01145 117 APALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQ 160 (203)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665553 22333 666777777777766543
No 362
>PRK14595 peptide deformylase; Provisional
Probab=21.68 E-value=94 Score=24.25 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=21.3
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|...|- |+.+.++++++++++||..+-.
T Consensus 12 pvLr~~a~---~V~~~~~~l~~li~dM~~tm~~ 41 (162)
T PRK14595 12 PILTKKAQ---AVKTFDDSLKRLLQDLEDTMYA 41 (162)
T ss_pred hHHhccce---ecCcCCHHHHHHHHHHHHHHhh
Confidence 45555443 3445789999999999988643
No 363
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=21.61 E-value=3.1e+02 Score=24.05 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=23.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH-HHHHHHHHHhHhHHHHHHHHHHhHHHHHHH----HHhhHHH
Q psy8909 26 MISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLE-KMNNATITKYSDMKQITVNISNSIEEQNQR----YKQLIPQ 100 (138)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLE-nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~k----y~~l~py 100 (138)
++.....|++....|-.+++++ .++|+.....+.=+. .+| ..+..-..|.....++...+..|... ...+...
T Consensus 40 LEssv~sL~~SVs~lss~iSdL-ss~L~~l~~sl~~~~s~L~-sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~L 117 (326)
T PF04582_consen 40 LESSVASLSDSVSSLSSTISDL-SSDLQDLASSLADMTSELN-SLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDL 117 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHH
Confidence 3445566666666666666653 333332222211111 111 12233334444444444444433322 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
-..|+.+...|+-|---|..+--=..-||.|+++||.
T Consensus 118 qs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 118 QSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 4445555555555555555555666777777777775
No 364
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=21.60 E-value=1.7e+02 Score=21.78 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy8909 110 SVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138 (138)
Q Consensus 110 ~V~~LE~~a~~LD~ysk~LE~K~k~le~~ 138 (138)
.++++|+..++|-..+.+|-.|+....||
T Consensus 46 ~~~ege~~~qkL~eqteeLK~kvqe~sk~ 74 (106)
T PF12443_consen 46 KIREGEQMIQKLGEQTEELKDKVQEFSKR 74 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45778888888888888888888777664
No 365
>PF15209 IL31: Interleukin 31
Probab=21.60 E-value=3.9e+02 Score=20.74 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=22.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
..+.|||+.|-.+.+.-. ...++.+||..
T Consensus 64 SaIl~ylk~Ik~l~~n~~-i~~Ii~~L~kl 92 (137)
T PF15209_consen 64 SAILPYLKAIKRLSNNTV-IDEIIEQLDKL 92 (137)
T ss_pred HHHHHHHHHHHHhcccch-HHHHHHHHHhc
Confidence 457899999999887744 77888888753
No 366
>PRK12765 flagellar capping protein; Provisional
Probab=21.56 E-value=6.6e+02 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy8909 120 KLDHYAKRLEAKFKQ 134 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~ 134 (138)
+||.|-.+|-.+|-+
T Consensus 554 rl~~~~~r~~~qf~a 568 (595)
T PRK12765 554 LIDTKYETMANKWLQ 568 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 367
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.49 E-value=5.5e+02 Score=22.44 Aligned_cols=103 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHH-----H
Q psy8909 26 MISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIP-----Q 100 (138)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p-----y 100 (138)
+..+||.+..-..+.+ +..|+...+..-..... ..-.-....-..+++........+.+..+++.-+.| .
T Consensus 128 ~~~~dP~~Aa~i~n~l--~~~yi~~~~~~~~~~~~---~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~ 202 (498)
T TIGR03007 128 YEDKDPELAKDVVQTL--LTIFVEETLGSKRQDSD---SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDY 202 (498)
T ss_pred eeCCCHHHHHHHHHHH--HHHHHHhhcccchhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
.++|.+++.++...+.-...+......|+.++.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 368
>PF15219 TEX12: Testis-expressed 12
Probab=21.35 E-value=3.4e+02 Score=19.94 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=7.2
Q ss_pred CCcccccccccc
Q psy8909 1 MTENVENSLSNK 12 (138)
Q Consensus 1 ~~~~~~~~~~~~ 12 (138)
|..-|..+|+.|
T Consensus 1 m~~spq~~s~~k 12 (100)
T PF15219_consen 1 MPDSPQLSSLGK 12 (100)
T ss_pred CCCCcccCCCCC
Confidence 555666666655
No 369
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=21.31 E-value=1.1e+03 Score=26.78 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHH
Q psy8909 38 TNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDM-KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS-VLKLE 115 (138)
Q Consensus 38 ~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m-~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~-V~~LE 115 (138)
..+|..|-++-.+.|......++.+.+ -.+.+=..+ .....---.++..|++-|....-+.++|++||.- =.+.+
T Consensus 2304 Sk~F~nVlq~QK~kL~en~n~Lk~I~~---~i~dk~n~~l~~l~~~~~~~~n~~kEiy~~I~~~~~~l~~ie~~nn~E~~ 2380 (2757)
T TIGR01612 2304 SKEFDNIIQLQKHKLTENLNDLKEIDQ---YISDKKNIFLHALNENTNFNFNALKEIYDDIINRENKADEIENINNKENE 2380 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 578888888888866555555544433 222222222 2222223356778889999999999999999864 34566
Q ss_pred HHHHHHHHHHHHHH
Q psy8909 116 QAAYKLDHYAKRLE 129 (138)
Q Consensus 116 ~~a~~LD~ysk~LE 129 (138)
.+.-..|..|+.++
T Consensus 2381 nv~~y~e~It~L~~ 2394 (2757)
T TIGR01612 2381 NIMQYIDTITKLTE 2394 (2757)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666665554
No 370
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.27 E-value=1.7e+02 Score=26.28 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=41.2
Q ss_pred HHHHHHH-HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8909 62 LEKMNNA-TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS 110 (138)
Q Consensus 62 LEnmN~~-~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~ 110 (138)
|+.|++. .-.||.-+++.+-+|...++.|-.-+..|+|.++-|.+.-+.
T Consensus 55 Ie~~~~~s~qeKFl~IR~KlleL~~~lQ~lS~df~~LqPLF~Ti~eyse~ 104 (379)
T PF11593_consen 55 IEEMNNKSPQEKFLLIRSKLLELYNKLQELSSDFQKLQPLFDTIPEYSEK 104 (379)
T ss_pred hhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHhhhHHHhcc
Confidence 3566544 457999999999999999999999999999999988876554
No 371
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.21 E-value=4.4e+02 Score=21.20 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8909 81 VNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLK-LEQAAYKLDHYAK 126 (138)
Q Consensus 81 ~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~-LE~~a~~LD~ysk 126 (138)
..+.+.+..+++.-++|+.-+++|..+...+.- |.+++..|+.+..
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444332 3444555555444
No 372
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=21.18 E-value=2.1e+02 Score=17.39 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy8909 76 MKQITVNISNSIEEQNQ 92 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ 92 (138)
+..+.++|..-...+|.
T Consensus 5 L~~ignNlNQiAk~~N~ 21 (48)
T PF05713_consen 5 LNRIGNNLNQIAKHANS 21 (48)
T ss_pred HHHHhccHHHHHHHHhC
Confidence 33344444444444444
No 373
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.17 E-value=5.3e+02 Score=22.04 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHH---HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q psy8909 61 VLEKMNNAT---ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLE 102 (138)
Q Consensus 61 LLEnmN~~~---s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~ 102 (138)
+|.++|+.+ ..+..++.....++...+..+...-..|...++
T Consensus 181 ~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~ 225 (359)
T COG1463 181 LLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLD 225 (359)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444433 233444444444444444444444444443333
No 374
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.14 E-value=3.1e+02 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
.-+-+++..|+.++..|..+-..|+.+
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888777754
No 375
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=21.08 E-value=1e+02 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.8
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
+.|..+.++||+||.++-+|
T Consensus 5 ~~L~~lR~~ID~ID~~ii~L 24 (386)
T PRK10622 5 NPLLALREKISALDEKLLAL 24 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998766
No 376
>KOG4025|consensus
Probab=21.04 E-value=4.3e+02 Score=21.58 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
.+|+-|..|-..|-+|=++|+.
T Consensus 121 ~FLeTIK~IASaIKkLLd~vN~ 142 (207)
T KOG4025|consen 121 AFLETIKLIASAIKKLLDAVNA 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444443
No 377
>PLN02678 seryl-tRNA synthetase
Probab=20.97 E-value=4.6e+02 Score=23.74 Aligned_cols=47 Identities=2% Similarity=0.120 Sum_probs=21.1
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
+...++..-+.+++.+..++..-+.......++.+|-+++..||+..
T Consensus 48 ~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 48 ELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333334444445555555555555433
No 378
>PF12848 ABC_tran_2: ABC transporter
Probab=20.94 E-value=2.5e+02 Score=18.33 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 88 EEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 88 ~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
..+.++-........+....+..+..|++.|..+-.|.
T Consensus 17 ~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~~a 54 (85)
T PF12848_consen 17 DYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFRAKA 54 (85)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666677777777777777777777764
No 379
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.89 E-value=6e+02 Score=22.65 Aligned_cols=54 Identities=11% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQI-DQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
...++...+.+++.+.+.++..+++. +..-.|-+.||.++.++..-...|..-|
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455666666666666655555443 4455677788888888887777776544
No 380
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=20.88 E-value=1.6e+02 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=15.8
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYK 95 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~ 95 (138)
.|.++..-...|...+.+|+....
T Consensus 7 ~~l~fe~~i~el~~~i~~l~~~~~ 30 (322)
T CHL00198 7 HVPDFMKPLAELESQVEELSKLAP 30 (322)
T ss_pred cccchhhhHHHHHHHHHHHHhhhc
Confidence 566777777777777777766443
No 381
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=20.81 E-value=96 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTA 45 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs 45 (138)
|.|.+.+ +|+.+.++.+++|+.+||..+-
T Consensus 12 p~Lr~~a---~~V~~~d~~l~~li~dM~etm~ 40 (168)
T COG0242 12 PRLRQVA---KPVEEVDDELRQLIDDMLETMY 40 (168)
T ss_pred HHHhccc---ccccccCHHHHHHHHHHHHHHH
Confidence 3454444 4557788999999999998864
No 382
>PRK07342 peptide chain release factor 2; Provisional
Probab=20.73 E-value=5.3e+02 Score=22.67 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=6.7
Q ss_pred HHHhHhHHHHHHHHH
Q psy8909 70 ITKYSDMKQITVNIS 84 (138)
Q Consensus 70 s~kY~~m~~~a~~l~ 84 (138)
..+|..++.++..+.
T Consensus 19 ~ke~~~l~~~v~~~~ 33 (339)
T PRK07342 19 MRERQQLDDSINGIN 33 (339)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 383
>PRK06443 chorismate mutase; Validated
Probab=20.67 E-value=1.1e+02 Score=24.73 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|+.+.++||+||.++-+|
T Consensus 6 dLeeLR~eID~ID~eIL~L 24 (177)
T PRK06443 6 DMEDLRSEILENTMDIIEL 24 (177)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4677889999999998776
No 384
>PRK11415 hypothetical protein; Provisional
Probab=20.67 E-value=1.9e+02 Score=19.55 Aligned_cols=33 Identities=6% Similarity=0.227 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 85 NSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 85 ~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
..+..|++....|.....+=..+|.+|..+|.-
T Consensus 7 d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~ 39 (74)
T PRK11415 7 DLISRLKNENPRFMSLFDKHNKLDHEIARKEGS 39 (74)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678888888888888888889999888884
No 385
>PRK11352 regulator protein FrmR; Provisional
Probab=20.64 E-value=1.9e+02 Score=20.48 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
..+..+.-|+.||..++.++.. |.|+..+
T Consensus 10 ~ll~RL~Ri~GQv~gi~~Mie~-~~~C~di 38 (91)
T PRK11352 10 KVLTRVRRIRGQIDALERSLEG-DAECRAI 38 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
Confidence 3445555555666655555544 4444433
No 386
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.32 E-value=9.5e+02 Score=24.71 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=39.6
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSD--MKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~--m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
++..++.......-|+.+... -..|.. ....+..+...-..+.....++...-+.++.....+..++.-...|+.=-
T Consensus 235 ~~~~le~l~~~~~~l~~i~~~-y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 313 (1353)
T TIGR02680 235 YRDELERLEALERALRNFLQR-YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREA 313 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666632 222222 12233333333344444444444444444444444444444444444433
Q ss_pred HHHHHHHH
Q psy8909 126 KRLEAKFK 133 (138)
Q Consensus 126 k~LE~K~k 133 (138)
..|+.++.
T Consensus 314 ~~l~~~~~ 321 (1353)
T TIGR02680 314 DALRTRLE 321 (1353)
T ss_pred HHHHHHHH
Confidence 33444333
No 387
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.19 E-value=7.9e+02 Score=23.70 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy8909 61 VLEKMNN 67 (138)
Q Consensus 61 LLEnmN~ 67 (138)
||++++.
T Consensus 516 li~~L~~ 522 (771)
T TIGR01069 516 LIEKLSA 522 (771)
T ss_pred HHHHHHH
Confidence 4444443
No 388
>PRK09039 hypothetical protein; Validated
Probab=20.07 E-value=5.7e+02 Score=22.01 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=16.6
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHH
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQ 100 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~py 100 (138)
.++...+.........+..|++.-+.|+..
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455555555555555566666555555433
No 389
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=2.4e+02 Score=20.15 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
+-+.++..+.-|+.||+.++.++.. |.|+...
T Consensus 7 ~kkkl~~RlrRi~GQv~gI~rMlEe-~~~C~dV 38 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGIERMLEE-DRDCIDV 38 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3456666777777777777776655 6665443
No 390
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.06 E-value=9.1e+02 Score=24.36 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=50.2
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHhHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQIT-VNISNSIEEQNQRYKQLIPQ-LEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a-~~l~~~~~~Ln~ky~~l~py-l~qID~Ie~~V~~LE~~a~ 119 (138)
+..+++.....+++|..-..-...+|..+.+.+ .........++.+...++.- -++..++++.+..|+.-..
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~ 430 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELR 430 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999988875 44555566666655554333 2335666666666665544
Done!