Query psy8909
Match_columns 138
No_of_seqs 72 out of 74
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2avr_X Adhesion A; antiparalle 92.6 2.2 7.6E-05 31.2 11.2 86 48-136 7-95 (119)
2 3mq9_A Bone marrow stromal ant 92.5 4 0.00014 33.9 14.8 26 28-53 345-370 (471)
3 3etw_A Adhesin A; antiparallel 88.7 5.5 0.00019 29.0 13.4 85 47-134 6-100 (119)
4 2ieq_A S glycoprotein, spike g 88.5 1.1 3.6E-05 32.5 5.8 62 68-129 26-103 (109)
5 1m1j_B Fibrinogen beta chain; 88.2 13 0.00043 32.6 15.8 67 69-135 126-194 (464)
6 2dfs_A Myosin-5A; myosin-V, in 86.1 15 0.00051 34.9 13.7 74 56-129 969-1043(1080)
7 4dac_A Computationally designe 85.2 0.95 3.3E-05 25.0 3.1 19 118-136 3-21 (28)
8 2l5g_B Putative uncharacterize 83.4 3.7 0.00013 25.0 5.5 32 99-130 6-37 (42)
9 4dnd_A Syntaxin-10, SYN10; str 79.1 16 0.00054 26.5 9.7 15 123-137 112-126 (130)
10 3ci9_A Heat shock factor-bindi 78.7 4.4 0.00015 25.1 4.8 42 77-118 5-47 (48)
11 3ghg_C Fibrinogen gamma chain; 78.7 31 0.0011 29.7 14.8 44 94-137 90-133 (411)
12 2no2_A HIP-I, huntingtin-inter 77.5 16 0.00055 25.7 11.3 40 58-98 3-42 (107)
13 3oja_B Anopheles plasmodium-re 77.4 21 0.00071 30.2 10.3 34 103-136 545-578 (597)
14 1zke_A Hypothetical protein HP 75.1 1 3.5E-05 31.0 1.2 76 39-127 2-77 (83)
15 2akf_A Coronin-1A; coiled coil 74.4 4.9 0.00017 22.9 3.7 28 106-133 3-30 (32)
16 2oqq_A Transcription factor HY 74.4 4.2 0.00015 24.7 3.7 23 113-135 7-29 (42)
17 3bas_A Myosin heavy chain, str 73.5 18 0.00061 24.3 10.3 64 71-137 21-84 (89)
18 4gif_A Polycystic kidney disea 73.5 9.2 0.00031 23.5 5.1 34 94-130 6-39 (45)
19 2v71_A Nuclear distribution pr 73.0 31 0.001 26.8 13.4 86 41-136 36-122 (189)
20 2dfs_A Myosin-5A; myosin-V, in 72.5 22 0.00074 33.9 9.9 56 77-132 959-1014(1080)
21 3ghg_B Fibrinogen beta chain; 72.1 47 0.0016 29.1 11.3 42 95-136 147-190 (461)
22 2v71_A Nuclear distribution pr 71.9 33 0.0011 26.6 13.5 93 44-136 43-136 (189)
23 3axj_B TRAX, translin associat 71.3 32 0.0011 28.0 9.6 72 44-121 195-271 (298)
24 2v66_B Nuclear distribution pr 70.7 26 0.00089 25.0 10.7 66 72-137 4-70 (111)
25 1yo7_A Regulatory protein ROP; 70.2 20 0.00068 26.0 7.1 80 41-132 8-87 (120)
26 3qb5_K Translin-associated pro 70.0 31 0.0011 27.9 9.2 71 45-121 185-260 (290)
27 1m1j_C Fibrinogen gamma chain; 69.8 52 0.0018 28.1 14.3 32 104-135 100-131 (409)
28 1deq_A Fibrinogen (alpha chain 67.9 59 0.002 28.0 13.5 95 38-132 55-157 (390)
29 3hrn_A Transient receptor pote 67.2 17 0.00057 23.9 5.7 34 94-130 5-38 (64)
30 3zrx_A AF1503 protein, osmolar 65.4 21 0.00073 22.1 6.1 23 102-124 91-113 (115)
31 3te3_A Polycystic kidney disea 63.0 9 0.00031 22.8 3.4 33 94-129 6-38 (39)
32 2ve7_C Kinetochore protein NUF 61.4 4 0.00014 32.6 2.2 65 72-136 139-203 (250)
33 3t98_B Nucleoporin NUP58/NUP45 59.3 40 0.0014 23.1 7.1 30 87-116 10-40 (93)
34 2efr_A General control protein 59.0 54 0.0019 24.5 10.8 28 37-65 16-43 (155)
35 4fla_A Regulation of nuclear P 58.9 52 0.0018 24.3 10.4 73 31-103 71-146 (152)
36 3ogi_B ESXO, putative ESAT-6-l 58.5 45 0.0015 23.5 9.3 69 29-97 8-93 (99)
37 4g2k_A General control protein 58.4 28 0.00097 25.5 6.1 37 95-131 21-57 (125)
38 4h9n_C Death domain-associated 58.2 42 0.0014 26.5 7.5 57 24-80 123-199 (212)
39 1ez3_A Syntaxin-1A; three heli 58.1 39 0.0013 23.0 6.7 64 40-104 10-73 (127)
40 2yko_A LINE-1 ORF1P; RNA-bindi 57.9 25 0.00087 28.2 6.3 35 102-136 13-47 (233)
41 2efr_A General control protein 56.8 59 0.002 24.3 15.7 51 48-98 47-97 (155)
42 1ez3_A Syntaxin-1A; three heli 56.5 24 0.00082 24.1 5.4 62 72-136 13-74 (127)
43 3ghg_A Fibrinogen alpha chain; 56.3 1.1E+02 0.0039 27.4 12.8 23 109-131 131-153 (562)
44 4g1a_A AQ-C16C19 peptide; heli 54.9 5.4 0.00018 22.5 1.4 26 112-137 3-28 (32)
45 1m1j_B Fibrinogen beta chain; 54.5 1.1E+02 0.0037 26.7 12.5 9 127-135 179-187 (464)
46 3swy_A Cyclic nucleotide-gated 53.5 27 0.00093 21.3 4.6 22 75-96 2-23 (46)
47 1gk4_A Vimentin; intermediate 53.0 46 0.0016 21.9 10.2 58 75-132 5-64 (84)
48 3kqg_A Langerin, C-type lectin 52.4 25 0.00086 25.0 5.1 38 81-118 2-39 (182)
49 2c5k_T Syntaxin TLG1, T-snare 51.9 54 0.0018 22.4 10.0 40 98-137 39-89 (95)
50 3swy_A Cyclic nucleotide-gated 51.9 38 0.0013 20.6 6.4 26 75-100 9-34 (46)
51 1nkd_A ROP; atomic resolution 51.8 47 0.0016 21.7 6.0 22 41-68 8-29 (65)
52 3tnu_B Keratin, type II cytosk 51.7 60 0.002 22.8 12.7 59 74-132 53-113 (129)
53 4abx_A DNA repair protein RECN 50.9 70 0.0024 23.4 8.0 60 76-135 89-162 (175)
54 3gwk_C SAG1039, putative uncha 49.2 50 0.0017 21.2 10.4 26 73-98 10-35 (98)
55 3zcc_A HAMP, osmolarity sensor 48.9 45 0.0015 20.6 8.3 47 78-124 66-113 (114)
56 3efg_A Protein SLYX homolog; x 48.8 40 0.0014 22.3 5.2 31 104-134 30-60 (78)
57 1x8y_A Lamin A/C; structural p 48.7 57 0.0019 21.7 7.4 53 80-132 12-66 (86)
58 3ezh_A Nitrate/nitrite sensor 48.4 20 0.00067 25.2 3.8 51 80-130 55-106 (125)
59 1x9b_A Hypothetical membrane p 48.3 23 0.00078 22.3 3.6 25 109-133 23-48 (53)
60 2yo3_A General control protein 47.9 1E+02 0.0036 25.1 8.6 53 62-117 207-259 (268)
61 3tnu_A Keratin, type I cytoske 47.6 71 0.0024 22.5 11.4 59 74-132 55-115 (131)
62 2d8d_A Aroag, phospho-2-dehydr 47.3 16 0.00055 24.1 3.1 19 96-114 4-22 (90)
63 2p22_C Protein SRN2; endosome, 47.3 93 0.0032 23.8 13.1 105 29-133 39-152 (192)
64 3rmi_A Chorismate mutase prote 47.2 16 0.00056 25.6 3.2 20 95-114 12-31 (114)
65 1ci6_A Transcription factor AT 46.6 52 0.0018 20.7 7.8 49 66-117 10-59 (63)
66 3swf_A CGMP-gated cation chann 46.2 64 0.0022 21.6 7.5 22 75-96 4-25 (74)
67 1s94_A S-syntaxin; three helix 46.0 39 0.0013 24.7 5.4 26 112-137 81-106 (180)
68 1ic2_A Tropomyosin alpha chain 45.2 61 0.0021 21.1 8.5 11 121-131 64-74 (81)
69 2ca5_A MXIH; transport protein 44.9 73 0.0025 21.9 7.2 53 26-78 19-76 (85)
70 1ybz_A Chorismate mutase; cons 44.8 20 0.00067 24.3 3.2 19 96-114 18-36 (91)
71 2nps_B Syntaxin 13, vesicle-as 44.4 58 0.002 20.6 7.3 35 79-113 7-45 (71)
72 4abm_A Charged multivesicular 44.3 20 0.00068 23.9 3.1 23 99-121 56-78 (79)
73 1zme_C Proline utilization tra 44.1 29 0.00098 21.2 3.7 20 104-123 46-65 (70)
74 1nkp_B MAX protein, MYC proto- 44.0 63 0.0022 20.9 6.6 42 95-136 40-81 (83)
75 1ecm_A Endo-oxabicyclic transi 44.0 19 0.00063 24.6 3.1 19 96-114 6-24 (109)
76 3ret_A Salicylate biosynthesis 43.7 17 0.00057 24.7 2.8 19 96-114 9-27 (101)
77 3u0c_A Invasin IPAB, 62 kDa an 43.3 1.1E+02 0.0039 23.7 7.8 54 62-118 87-140 (201)
78 3axj_A GM27569P, translin; tra 43.0 1.2E+02 0.0041 23.8 8.4 52 66-121 172-227 (249)
79 2vkl_A RV0948C/MT0975; helical 42.4 20 0.00068 24.1 3.0 19 96-114 13-31 (90)
80 2js5_A Uncharacterized protein 42.1 64 0.0022 21.4 5.3 54 62-115 12-65 (71)
81 4ioe_A Secreted protein ESXB; 41.6 64 0.0022 20.3 9.8 18 75-92 13-30 (93)
82 1gk7_A Vimentin; intermediate 41.1 41 0.0014 19.6 3.9 28 90-117 8-35 (39)
83 3htk_B Structural maintenance 40.3 70 0.0024 20.4 9.9 64 64-127 8-71 (73)
84 1fmh_A General control protein 39.6 51 0.0017 18.5 4.5 27 104-130 3-29 (33)
85 3gp4_A Transcriptional regulat 39.2 1E+02 0.0035 21.9 7.7 28 102-129 88-115 (142)
86 3swf_A CGMP-gated cation chann 39.1 37 0.0013 22.8 3.8 47 82-134 4-50 (74)
87 3hgf_A Rhoptry protein fragmen 39.0 80 0.0027 22.2 5.7 52 76-127 12-63 (107)
88 2er8_A Regulatory protein Leu3 38.9 16 0.00053 22.7 1.9 20 102-121 49-68 (72)
89 3mq9_A Bone marrow stromal ant 38.8 1.6E+02 0.0055 24.1 15.6 27 109-135 443-469 (471)
90 1j1j_A Translin; testis/brain 38.5 86 0.0029 24.5 6.6 53 65-121 168-224 (240)
91 3he4_A Synzip6; heterodimeric 38.5 51 0.0017 20.5 4.1 24 113-136 21-44 (56)
92 2oqq_A Transcription factor HY 38.4 65 0.0022 19.4 4.6 25 105-129 6-30 (42)
93 2fxo_A Myosin heavy chain, car 37.9 1E+02 0.0036 21.6 13.9 82 55-136 32-117 (129)
94 3onj_A T-snare VTI1; helix, HA 37.6 66 0.0023 21.7 5.1 11 120-130 73-83 (97)
95 3nmd_A CGMP dependent protein 36.7 91 0.0031 20.6 7.1 43 90-132 21-63 (72)
96 3nmd_A CGMP dependent protein 35.9 94 0.0032 20.6 5.7 32 83-114 28-59 (72)
97 3hnw_A Uncharacterized protein 35.8 1.2E+02 0.0042 21.9 15.5 103 30-134 27-135 (138)
98 2xdj_A Uncharacterized protein 35.5 99 0.0034 20.7 8.7 42 95-136 20-65 (83)
99 2z5i_A TM, general control pro 35.4 77 0.0026 19.4 4.8 16 108-123 11-26 (52)
100 3na7_A HP0958; flagellar bioge 35.2 1.5E+02 0.0053 22.8 12.0 20 95-114 111-130 (256)
101 3mov_A Lamin-B1; LMNB1, B-type 35.1 1.1E+02 0.0036 20.9 8.8 53 80-132 21-75 (95)
102 3t97_C Nuclear pore glycoprote 34.0 55 0.0019 21.0 4.0 15 103-117 34-48 (64)
103 3gpv_A Transcriptional regulat 33.8 60 0.002 23.2 4.6 33 99-131 99-131 (148)
104 3hls_A Guanylate cyclase solub 33.7 58 0.002 20.8 4.0 15 120-134 25-39 (66)
105 1lwu_C Fibrinogen gamma chain; 33.3 1.6E+02 0.0055 24.3 7.6 13 107-119 38-50 (323)
106 3zbh_A ESXA; unknown function, 33.0 92 0.0031 19.6 10.4 32 72-103 10-41 (99)
107 1lwu_B Fibrinogen beta chain; 32.8 67 0.0023 26.5 5.3 21 103-123 36-56 (323)
108 3coq_A Regulatory protein GAL4 32.6 45 0.0015 21.1 3.4 19 103-121 46-64 (89)
109 1kd8_A GABH AIV, GCN4 acid bas 32.5 76 0.0026 18.5 4.3 23 106-128 5-27 (36)
110 2zqm_A Prefoldin beta subunit 32.4 1.1E+02 0.0038 20.3 7.0 67 71-137 13-91 (117)
111 1vcs_A Vesicle transport throu 32.1 46 0.0016 22.7 3.6 10 120-129 75-84 (102)
112 3pp5_A BRK1, protein brick1; t 31.4 1.1E+02 0.0039 20.2 6.7 18 102-119 52-69 (73)
113 2g0u_A Type III secretion syst 31.3 1.3E+02 0.0044 20.8 7.2 54 25-78 24-82 (92)
114 1l8d_A DNA double-strand break 31.3 1.2E+02 0.004 20.3 7.2 37 97-133 66-102 (112)
115 2no2_A HIP-I, huntingtin-inter 31.0 1.3E+02 0.0046 20.8 6.3 47 88-136 25-71 (107)
116 1gl2_B Syntaxin 7; membrane pr 30.9 98 0.0033 19.2 7.3 34 80-113 11-48 (65)
117 1zxz_A PDF, peptide deformylas 30.6 52 0.0018 25.2 4.0 33 14-46 12-44 (197)
118 1nkp_B MAX protein, MYC proto- 30.4 1.1E+02 0.0038 19.7 5.5 41 79-119 38-78 (83)
119 1sfc_B Protein (syntaxin 1A), 29.5 1.2E+02 0.004 19.7 8.3 34 80-113 23-60 (83)
120 3tnf_B LIDA, RAS-related prote 29.5 2.2E+02 0.0075 24.0 7.8 79 58-136 26-112 (384)
121 1hwt_C Protein (heme activator 29.4 19 0.00064 22.7 1.1 20 102-121 58-77 (81)
122 1q08_A Zn(II)-responsive regul 29.3 1.1E+02 0.0039 19.5 6.9 29 99-127 43-71 (99)
123 3csx_A Putative uncharacterize 29.2 1.3E+02 0.0046 20.3 6.0 54 62-115 24-77 (81)
124 3c1y_A DNA integrity scanning 29.1 1.4E+02 0.0049 25.2 6.8 29 87-115 171-199 (377)
125 1lwu_C Fibrinogen gamma chain; 29.0 1.8E+02 0.0061 24.0 7.2 15 102-116 40-54 (323)
126 3qne_A Seryl-tRNA synthetase, 28.9 2.9E+02 0.0098 24.0 9.6 57 67-123 43-99 (485)
127 2p90_A Hypothetical protein CG 28.9 1.1E+02 0.0039 24.7 6.0 47 59-105 215-263 (319)
128 3fx7_A Putative uncharacterize 28.7 1.5E+02 0.005 20.5 8.7 32 74-105 9-40 (94)
129 3caz_A BAR protein; thermo-aci 28.2 1E+02 0.0034 24.7 5.3 64 45-108 156-223 (294)
130 2p2u_A HOST-nuclease inhibitor 28.1 1.8E+02 0.0061 21.5 6.5 37 78-114 34-71 (171)
131 4gwp_A Mediator of RNA polymer 28.0 1.6E+02 0.0055 21.1 5.9 34 60-93 43-76 (115)
132 3o0z_A RHO-associated protein 27.4 2E+02 0.007 21.8 8.0 10 126-135 93-102 (168)
133 3u0c_A Invasin IPAB, 62 kDa an 27.2 2.2E+02 0.0075 22.1 9.1 31 69-99 115-145 (201)
134 1ud0_A HSC70, 70 kDa heat-shoc 27.1 1.3E+02 0.0044 20.0 5.1 18 104-121 56-73 (113)
135 1lrz_A FEMA, factor essential 27.0 2.5E+02 0.0087 22.9 7.9 17 56-72 198-214 (426)
136 2olt_A Hypothetical protein; s 26.9 1.9E+02 0.0066 21.3 11.0 26 95-120 157-182 (227)
137 2ap3_A Conserved hypothetical 26.8 2.2E+02 0.0076 22.0 8.0 69 60-128 113-185 (199)
138 4etp_A Kinesin-like protein KA 26.5 2.7E+02 0.0093 23.2 8.1 33 103-135 25-57 (403)
139 2dq0_A Seryl-tRNA synthetase; 26.5 3E+02 0.01 23.4 8.8 57 66-122 40-96 (455)
140 2gtv_X CM, chorismate mutase; 26.3 37 0.0013 23.6 2.2 17 96-112 4-20 (104)
141 1ws0_A Peptide deformylase 1; 26.2 52 0.0018 24.4 3.2 29 14-45 12-40 (156)
142 3u04_A Peptide deformylase 1; 26.2 49 0.0017 25.2 3.1 30 14-46 14-43 (190)
143 3e35_A Uncharacterized protein 26.2 84 0.0029 25.9 4.7 48 58-105 217-269 (325)
144 3caz_A BAR protein; thermo-aci 26.0 2.1E+02 0.0073 22.8 6.9 43 83-125 93-135 (294)
145 2aze_B Transcription factor E2 26.0 1.4E+02 0.0046 20.7 5.2 35 102-136 6-40 (106)
146 2wam_A RV2714, conserved hypot 25.9 1.7E+02 0.0058 24.3 6.6 14 115-128 329-342 (351)
147 3a7p_A Autophagy protein 16; c 25.8 2.1E+02 0.0072 21.4 11.5 70 56-128 67-137 (152)
148 1bf5_A Signal transducer and a 25.3 3.7E+02 0.013 24.1 9.4 32 48-79 14-45 (575)
149 3ljm_A Coil Ser L9C; de novo d 25.2 95 0.0032 17.2 4.1 17 119-135 11-27 (31)
150 1fxk_A Prefoldin; archaeal pro 25.1 1.5E+02 0.0051 19.4 6.9 68 70-137 7-86 (107)
151 3rrk_A V-type ATPase 116 kDa s 24.9 2.2E+02 0.0076 22.5 7.0 9 37-45 65-73 (357)
152 4e61_A Protein BIM1; EB1-like 24.8 1.9E+02 0.0064 20.4 6.1 20 98-117 42-61 (106)
153 3pn3_A Peptide deformylase 1B, 24.8 55 0.0019 25.2 3.2 30 14-46 9-38 (193)
154 1xeo_A Peptide deformylase; co 24.6 56 0.0019 24.5 3.1 30 14-46 11-40 (168)
155 1s94_A S-syntaxin; three helix 24.5 2E+02 0.0069 20.7 7.3 65 41-105 41-105 (180)
156 2vz4_A Tipal, HTH-type transcr 24.4 90 0.0031 20.8 3.9 27 99-125 78-104 (108)
157 1fxk_C Protein (prefoldin); ar 24.2 1.8E+02 0.006 20.0 7.0 35 90-124 10-44 (133)
158 1dn1_B Syntaxin 1A, syntaxin b 24.1 1.3E+02 0.0044 23.5 5.3 58 76-136 33-97 (267)
159 1rl4_A Formylmethionine deform 24.0 58 0.002 24.9 3.2 30 14-46 17-46 (188)
160 1jnm_A Proto-oncogene C-JUN; B 23.9 1.3E+02 0.0045 18.4 6.1 32 102-133 22-53 (62)
161 1n5n_A Peptide deformylase; me 23.8 59 0.002 24.8 3.1 30 14-46 24-53 (180)
162 4ad8_A DNA repair protein RECN 23.7 3.2E+02 0.011 22.8 8.3 46 76-121 188-239 (517)
163 1yvl_A Signal transducer and a 23.5 4.2E+02 0.014 24.1 10.4 30 48-77 149-178 (683)
164 1lme_A PDF, peptide deformylas 23.5 55 0.0019 24.9 2.9 29 14-45 22-50 (176)
165 2ve7_C Kinetochore protein NUF 23.4 1.6E+02 0.0056 23.1 5.8 49 69-117 115-163 (250)
166 1vp7_A Exodeoxyribonuclease VI 23.4 36 0.0012 23.9 1.7 39 90-128 32-74 (100)
167 3dwc_A TCMCP-1, metallocarboxy 23.3 3.6E+02 0.012 23.6 8.5 42 72-114 104-145 (505)
168 1aq5_A Matrilin-1, CMP, cartil 23.2 97 0.0033 19.0 3.5 18 113-130 24-41 (47)
169 1gmj_A ATPase inhibitor; coile 23.1 1.8E+02 0.0062 19.7 7.6 28 102-129 51-78 (84)
170 2wq1_A General control protein 23.0 1.1E+02 0.0039 17.4 4.8 24 95-118 7-30 (33)
171 2p90_A Hypothetical protein CG 22.9 1.2E+02 0.0042 24.6 5.1 36 97-132 231-266 (319)
172 3hh0_A Transcriptional regulat 22.8 1.7E+02 0.0057 20.8 5.3 27 102-128 87-113 (146)
173 2zdi_C Prefoldin subunit alpha 22.8 2.1E+02 0.0071 20.3 6.5 40 97-136 100-139 (151)
174 3tkl_B LIDA protein, substrate 22.8 1.7E+02 0.0058 23.6 5.7 80 57-136 42-129 (267)
175 1r8e_A Multidrug-efflux transp 22.6 1.5E+02 0.0051 22.3 5.3 31 100-130 84-114 (278)
176 3uwb_A RIIA-RIIB membrane-asso 22.6 60 0.002 24.0 2.9 30 14-46 11-40 (154)
177 3ra3_B P2F; coiled coil domain 22.4 1E+02 0.0035 16.7 3.2 25 89-116 4-28 (28)
178 2xz3_A Maltose ABC transporter 22.4 3.2E+02 0.011 22.2 9.4 15 102-116 386-400 (463)
179 3f6n_A Virion-associated prote 22.2 1.7E+02 0.0059 21.3 5.2 44 77-120 5-48 (129)
180 2os0_A Peptide deformylase; PD 22.1 66 0.0023 24.4 3.1 30 14-45 13-42 (188)
181 2ke4_A CDC42-interacting prote 21.8 1.8E+02 0.0063 19.8 5.1 30 102-131 62-91 (98)
182 1lwu_B Fibrinogen beta chain; 21.8 1.9E+02 0.0064 23.8 6.0 8 125-132 44-51 (323)
183 3ajm_A Programmed cell death p 21.7 2.7E+02 0.0091 22.0 6.6 59 73-131 93-156 (213)
184 3zqs_A E3 ubiquitin-protein li 21.6 1.2E+02 0.0041 23.2 4.5 30 82-111 74-103 (186)
185 2p32_A Heat shock 70 kDa prote 21.5 2E+02 0.0067 19.5 5.8 18 104-121 70-87 (120)
186 2cqq_A RSGI RUH-037, DNAJ homo 21.4 1.6E+02 0.0054 18.9 4.5 41 55-99 12-57 (72)
187 3iv1_A Tumor susceptibility ge 21.1 1.9E+02 0.0066 19.3 8.1 17 113-129 43-59 (78)
188 1t2k_D Cyclic-AMP-dependent tr 21.1 1.5E+02 0.0052 18.1 5.8 32 66-97 9-41 (61)
189 2w3t_A Peptide deformylase; pr 21.0 72 0.0024 24.5 3.1 30 14-46 11-40 (188)
190 3g5k_A Peptide deformylase, mi 20.9 81 0.0028 23.7 3.4 33 14-46 13-45 (183)
191 4dr9_A Peptide deformylase; hy 20.9 74 0.0025 24.4 3.2 30 14-46 27-56 (192)
192 2avr_X Adhesion A; antiparalle 20.8 2.4E+02 0.0082 20.3 8.2 24 113-136 35-61 (119)
193 2okl_A Peptide deformylase 2; 20.7 74 0.0025 24.1 3.1 29 14-45 14-43 (185)
194 3s9g_A Protein hexim1; cyclin 20.6 2.3E+02 0.0079 20.0 6.7 67 46-115 9-78 (104)
195 3r84_A Mediator of RNA polymer 20.5 2.1E+02 0.0071 19.4 7.3 34 59-92 39-72 (86)
196 3u5v_A Protein MAX, transcript 20.3 65 0.0022 21.1 2.4 46 87-136 17-65 (76)
No 1
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=92.63 E-value=2.2 Score=31.19 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=65.6
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV---LKLEQAAYKLDHY 124 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V---~~LE~~a~~LD~y 124 (138)
|.+++..--.+|+.|++|=.. +|..-+.+|..-...+....+.|.++..-...|-+..+.. ...-+++.+-+.|
T Consensus 7 V~s~l~~LEaeyq~L~~kE~q---rynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~ 83 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEA---RFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 567777888899999998765 4999999999999999999988998888777776654332 4556667777777
Q ss_pred HHHHHHHHHhhh
Q psy8909 125 AKRLEAKFKQLE 136 (138)
Q Consensus 125 sk~LE~K~k~le 136 (138)
.+.|+.+++..+
T Consensus 84 ~~~Ld~eI~~qe 95 (119)
T 2avr_X 84 LKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666544
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.52 E-value=4 Score=33.94 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=15.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHhh
Q psy8909 28 SHDPRLNELATNMFKKTADYLIGELN 53 (138)
Q Consensus 28 ~~~~~l~~la~~mf~kvs~yl~~El~ 53 (138)
|..|...+....+-..+..++.|+.+
T Consensus 345 p~~p~~~~~~~~~~~~~~~vl~G~~t 370 (471)
T 3mq9_A 345 PNIPQMSAFWYAVRTAVINAASGRQT 370 (471)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555555555667777777643
No 3
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=88.69 E-value=5.5 Score=28.99 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=67.5
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHH
Q psy8909 47 YLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ----------IYDSVLKLEQ 116 (138)
Q Consensus 47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~----------Ie~~V~~LE~ 116 (138)
=|.++++.--..|..|++|= ..+|.+-+..|..-...+....+.|+.+..-+..|-+ ....|.+++.
T Consensus 6 ~i~~~l~~Leae~q~L~~~E---~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~ 82 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQE---EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 36678888888999888864 5789999999999999999999999999988888854 4556777777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8909 117 AAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 117 ~a~~LD~ysk~LE~K~k~ 134 (138)
+...||.-.+..+..+..
T Consensus 83 ~~keLd~~ik~qekiIdn 100 (119)
T 3etw_A 83 ALKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766655443
No 4
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=88.54 E-value=1.1 Score=32.46 Aligned_cols=62 Identities=6% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHhHhHHHHHHHHHHhHHHHHHHHH--------hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 68 ATITKYSDMKQITVNISNSIEEQNQRYK--------QLI--------PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 68 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--------~l~--------pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.++.-|.++.+++.+.++.+.+|=++|. .++ .....||++|.+...|-.++.+|-.|...|-
T Consensus 26 tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n 103 (109)
T 2ieq_A 26 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQIN 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888888888877777665544 233 4456899999999999999999999887664
No 5
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.24 E-value=13 Score=32.60 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=46.0
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ--IYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~--Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
....|........+....+++....++..+.|++.+.. +..++..|+..+..|..-...||.++..+
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666666666677777777766654 66788888888888888888888877654
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.12 E-value=15 Score=34.94 Aligned_cols=74 Identities=8% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 56 QADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI-DQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 56 ~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.++++.++.=+...-.+-..+......+...+..+...++.++.-.++. ++++++|..|++....|.+-.-.||
T Consensus 969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444445555555555555554444444444433332222 3444444444444444444444444
No 7
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=85.19 E-value=0.95 Score=24.96 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy8909 118 AYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 118 a~~LD~ysk~LE~K~k~le 136 (138)
||+||.-+|+||..+-++|
T Consensus 3 vykldanvkrlekevgkle 21 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLE 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHhhhh
Confidence 6778888888887777665
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=83.43 E-value=3.7 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
..+|+||-|+..+++-|+-+..|-.--+.||.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999988888887777774
No 9
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=79.11 E-value=16 Score=26.48 Aligned_cols=15 Identities=7% Similarity=0.439 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhh
Q psy8909 123 HYAKRLEAKFKQLEK 137 (138)
Q Consensus 123 ~ysk~LE~K~k~le~ 137 (138)
.|+..++.+++.|+.
T Consensus 112 ~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 112 VFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888887764
No 10
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=78.74 E-value=4.4 Score=25.12 Aligned_cols=42 Identities=12% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q psy8909 77 KQITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~LE~~a 118 (138)
.+.+.-+..-+++++.|+..+ ...+..||+.-.+|..||+.+
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 455566666777888888774 456778888888888888754
No 11
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=78.68 E-value=31 Score=29.68 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
-++...|-..|..++.+|..|+.++...+.-...|+.++..++.
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888888888888888888888888887765
No 12
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=77.52 E-value=16 Score=25.70 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH
Q psy8909 58 DYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI 98 (138)
Q Consensus 58 dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~ 98 (138)
+-+||.+ |--+...-..-++...++.+..+.|+.+...+.
T Consensus 3 Hi~LLRK-~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 3 HADLLRK-NAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 444444555555555566666666665555554
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.38 E-value=21 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+++.++.++.+..+.+.+|-+=...+..++|.++
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333344333333333444444443
No 14
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=75.14 E-value=1 Score=30.98 Aligned_cols=76 Identities=20% Similarity=0.389 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 39 NMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 39 ~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
.||.++-..+. +++.+.+|.++|=+|-+..-.-|.-++.-.-++-..+. +.-..||+++|.+|-+.+
T Consensus 2 ~MFErid~ilk-~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~L~------------~~~~~QideeV~~LKe~I 68 (83)
T 1zke_A 2 HMFEKIRKILA-DIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVN------------EAFFTQLSEEVERLKELI 68 (83)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTTCC------------GGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccccC------------HHHHHHHHHHHHHHHHHH
Confidence 57888877665 68889999999999988888888887765443332221 123456788999999999
Q ss_pred HHHHHHHHH
Q psy8909 119 YKLDHYAKR 127 (138)
Q Consensus 119 ~~LD~ysk~ 127 (138)
..|..|-++
T Consensus 69 daLNK~Kke 77 (83)
T 1zke_A 69 NALNKIKKG 77 (83)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 999888664
No 15
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=74.44 E-value=4.9 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
.+|+.|..|-.+|.+|-....+||.-+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777788888888777777776543
No 16
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.41 E-value=4.2 Score=24.69 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 113 KLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
.||+-|..|+.--.+||.|+.-|
T Consensus 7 eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 17
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.52 E-value=18 Score=24.34 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.++.+++..........+.|..++..| ++...++-.++...|.....|-.--..||.+++.++.
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l---~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTL---LEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444332 3444444444666666666666666666666666553
No 18
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=73.52 E-value=9.2 Score=23.48 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
.++|+-...+++++|..| +.+++++|.-..+|+.
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~~ 39 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLKM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 478899999999999764 6678888887766654
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.97 E-value=31 Score=26.77 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI-PQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~-pyl~qID~Ie~~V~~LE~~a~ 119 (138)
|..-|.=|..||+.... .+..+-.++......+..-+..++.||.... ....+|..+++.++.|-....
T Consensus 36 FqesSrELE~ELE~eL~----------~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 36 FQEGSRELEAELEAQLV----------QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554422 2223444555555566666666666666543 334566666666666666666
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8909 120 KLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~le 136 (138)
.|=.|...||..=-.+|
T Consensus 106 ~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 106 QLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 66666666665544444
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.55 E-value=22 Score=33.87 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
.+....|.+.+++|+..-.++...-.+|..+++++.+|++...++-.-.+.||.+.
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555666666666666555555444444444443
No 21
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=72.13 E-value=47 Score=29.09 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=29.2
Q ss_pred HhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 95 KQLIPQLE--QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 95 ~~l~pyl~--qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
++...|.+ .|..++.+|..|..++..+......|+..+..++
T Consensus 147 e~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 147 EKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444 4556788888888888888888888887776654
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.91 E-value=33 Score=26.62 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 44 TADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNS-IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 44 vs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~-~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
+-.-|..+|..+-.-..=|..-|......+..++......... ....+....++.......+.+-..|.+||+.-.-|.
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5567888898888888888888888888888887777776554 333444445566666666666777777777666666
Q ss_pred HHHHHHHHHHHhhh
Q psy8909 123 HYAKRLEAKFKQLE 136 (138)
Q Consensus 123 ~ysk~LE~K~k~le 136 (138)
.=.....+.+..++
T Consensus 123 r~~R~~~~SleD~e 136 (189)
T 2v71_A 123 RAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 65555555544443
No 23
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=71.34 E-value=32 Score=28.02 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=47.9
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHH
Q psy8909 44 TADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQL-----IPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 44 vs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l-----~pyl~qID~Ie~~V~~LE~~a 118 (138)
..+||.|=...|.+=.++ -+|..+.+.|. .+..+..++++|..-+..| ....+++|.+-.+|.+.|.++
T Consensus 195 ~edYLlGL~DLtGELmR~--ainsv~~Gd~~----~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v~ 268 (298)
T 3axj_B 195 PTEYILGLSDLTGELMRR--CINSLGSGDTD----TCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVC 268 (298)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHTTCHH----HHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH--HHHHHhccchH----hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 345555444444333333 34555555553 3556667777776666654 788899999999999999999
Q ss_pred HHH
Q psy8909 119 YKL 121 (138)
Q Consensus 119 ~~L 121 (138)
|.|
T Consensus 269 Ydl 271 (298)
T 3axj_B 269 YNV 271 (298)
T ss_dssp HHH
T ss_pred HHh
Confidence 976
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.72 E-value=26 Score=25.03 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=39.4
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLI-PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~-pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+..+++.....+...++.++.||...+ ....+|..+++.++.|=..-..|=.|...||.+=-.+|+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 345556666666666666666666643 334556666666666666666666666666655555443
No 25
>1yo7_A Regulatory protein ROP; protein design, RE-engineering of topology, four-helix bundle, replication regulator; 2.80A {Escherichia coli}
Probab=70.24 E-value=20 Score=25.97 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
--++++||+++. +=|||++|..- +-+.|+--++-=++-++.|..+..-+....+||.+..--|..-.-
T Consensus 8 ALNMAkFI~aQs------LlLLEKLneLD------lD~~A~~CE~LHe~AE~L~~~l~~r~~~~~~~d~qa~~ce~lhd~ 75 (120)
T 1yo7_A 8 ALNMARFIRSQT------LTLLEKLNELD------ADEQADICESLHDHADELYRSCLASFKKNGQIDEQADICESLHDH 75 (120)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHhhhcC------chHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence 357899999875 46899999753 333333333333444555666666666666677776655555444
Q ss_pred HHHHHHHHHHHH
Q psy8909 121 LDHYAKRLEAKF 132 (138)
Q Consensus 121 LD~ysk~LE~K~ 132 (138)
-|+.-..+-+||
T Consensus 76 ae~l~~s~~ar~ 87 (120)
T 1yo7_A 76 ADELYRSCLARF 87 (120)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 26
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=69.95 E-value=31 Score=27.92 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHH
Q psy8909 45 ADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQL-----IPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 45 s~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l-----~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
.+||-|=...|.+=.++ -+|..+.+.|. .+..+..++.+|-.-+..| ....+++|.+-.+|.++|.++|
T Consensus 185 eDYLlGL~DLtGELmR~--ainsv~~Gd~~----~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v~Y 258 (290)
T 3qb5_K 185 VDYLLGVADLTGELMRM--CINSVGNGDID----TPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACY 258 (290)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHTTCSS----HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhccchH----HHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhh
Confidence 44444433333332332 23444444442 3445566666665555554 3688999999999999999999
Q ss_pred HH
Q psy8909 120 KL 121 (138)
Q Consensus 120 ~L 121 (138)
-|
T Consensus 259 dl 260 (290)
T 3qb5_K 259 AL 260 (290)
T ss_dssp HH
T ss_pred he
Confidence 76
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.82 E-value=52 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
|...+.+|..|+.....++.=...|+.++..+
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334444444444444443334444444443
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.91 E-value=59 Score=27.98 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH-HHHHHHHHHHH-------
Q psy8909 38 TNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI-PQLEQIDQIYD------- 109 (138)
Q Consensus 38 ~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~-pyl~qID~Ie~------- 109 (138)
+.++.+..+=+..-++--...+.-+.+.+..+..-+..|.+...+.-+..++....|.++. +.-++|..|..
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455566666666666667777777777777777777777666666666555555555532 22333433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 110 SVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 110 ~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
.+..|...+..+=.=-++||.++
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445566555
No 29
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=67.22 E-value=17 Score=23.86 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+++|+-...+++++|..| +.+++++|.-...|+.
T Consensus 5 ~EEF~~L~rRVlqLE~sl---~gI~SqIDaV~~KL~~ 38 (64)
T 3hrn_A 5 YEEFQVLVRRVDRMEHSI---GSIVSKIDAVIVKLEI 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 467888899999998764 5678888886666653
No 30
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=65.45 E-value=21 Score=22.06 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
++++.|+..+..++.++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~ 113 (115)
T 3zrx_A 91 YLAESINKDIEECNAIIEQFIDY 113 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766554
No 31
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=63.04 E-value=9 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 94 YKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 94 y~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.++|+-..++++++|..| +.+++++|.-..+|+
T Consensus 6 ~eeF~~L~rRVlqlE~~l---~gI~S~idav~~Kl~ 38 (39)
T 3te3_A 6 GEEFYMLTRRVLQLETVL---EGVVSQIDAVGSKLK 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 478899999999999764 667888887665554
No 32
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=61.36 E-value=4 Score=32.60 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=33.5
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+.....+..........++++++++++..-++|+++..++.+.+..+-..=.|..+|..++.+++
T Consensus 139 ~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~ 203 (250)
T 2ve7_C 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203 (250)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhce
Confidence 33344455555556666666667777777777777777777666655555678888877777654
No 33
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=59.29 E-value=40 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQ-LIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 87 ~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE~ 116 (138)
..++=.+|+. |+.|-++|+++|..|..+..
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444444 77888888888887665443
No 34
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.97 E-value=54 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHH
Q psy8909 37 ATNMFKKTADYLIGELNSTQADYEVLEKM 65 (138)
Q Consensus 37 a~~mf~kvs~yl~~El~~t~~dy~LLEnm 65 (138)
+.+-+.-|+. +.++|+.+-+=...-+.-
T Consensus 16 ad~KyeEvaR-~E~dLEraEERae~aE~k 43 (155)
T 2efr_A 16 NYHLENEVAR-LKKLLERAEERAELSEGK 43 (155)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444555666 777777766655554443
No 35
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=58.86 E-value=52 Score=24.34 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHh---hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 31 PRLNELATNMFKKTADYLI---GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 31 ~~l~~la~~mf~kvs~yl~---~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
..+......++..+++|.. +|+..-..-...|+.........+.+-+..++.-..++..+++.-.+|+.+++.
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666667777754 455554444555555555555555555555555555555555555555555443
No 36
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=58.48 E-value=45 Score=23.47 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHhh-----------------hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHH
Q psy8909 29 HDPRLNELATNMFKKTADYLIGELN-----------------STQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQN 91 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~~El~-----------------~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln 91 (138)
.+|+.-.-+..=|..+..=|++|+. +...-.+|+.++|.....=-.-|..|+.+|+.+.....
T Consensus 8 Td~~~M~~~Ag~vd~~n~~Vq~El~rl~~~v~~iaga~W~G~Aq~sf~~lM~rwn~a~r~l~~aL~sI~dnir~nA~~ye 87 (99)
T 3ogi_B 8 TDPHAMRDMAGRFEVHAQTVEDEARRMWASAQNISGAGWSGMAEATSLDTMAQMNQAFRNIVNMLHGVRDGLVRDANNYE 87 (99)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5788888888889999999999987 23445789999999999999999999999999998877
Q ss_pred HHHHhh
Q psy8909 92 QRYKQL 97 (138)
Q Consensus 92 ~ky~~l 97 (138)
+.-+.-
T Consensus 88 ~~E~~n 93 (99)
T 3ogi_B 88 QQEQAS 93 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 37
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=58.36 E-value=28 Score=25.50 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
..+++.+.+|--||..|..|..++.-|..|..++.+-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~ 57 (125)
T 4g2k_A 21 DKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678889999999999999999999999888653
No 38
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=58.18 E-value=42 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=43.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHhh----Hh----------------hhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy8909 24 EPMISHDPRLNELATNMFKKTADYLIG----EL----------------NSTQADYEVLEKMNNATITKYSDMKQIT 80 (138)
Q Consensus 24 ~~~~~~~~~l~~la~~mf~kvs~yl~~----El----------------~~t~~dy~LLEnmN~~~s~kY~~m~~~a 80 (138)
+-+.=+...+.++|.++|..|+.+|+- ++ ..+..|=.|++++..+-...+..+.++.
T Consensus 123 ~~L~l~~~~~~~iA~daF~~vG~~LQ~RR~~Dl~~~~~~hlt~~~~~~~DPA~~D~~L~~KL~eN~~~~~~kl~ev~ 199 (212)
T 4h9n_C 123 HSLGLPRQQLQLMAQDAFRDVGIRLQERRHLDLIYNFGCHLTDDYRPGVDPALSDPVLARRLRENRSLAMSRLDEVI 199 (212)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSCGGGTTCCGGGCGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778999999999999999973 33 4577889999999988777666665554
No 39
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=58.12 E-value=39 Score=22.99 Aligned_cols=64 Identities=9% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q psy8909 40 MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI 104 (138)
Q Consensus 40 mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI 104 (138)
.|..| .-|+.++..-...++-|..+|...-..-.....+-..|...+.+.+.+...++.-|+.|
T Consensus 10 F~~~v-~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l 73 (127)
T 1ez3_A 10 FFEQV-EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSI 73 (127)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 34677777777777777777776543322233333444444555555555555444443
No 40
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=57.94 E-value=25 Score=28.17 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..|+.+|+.+.++.++........+.+|.+++.|+
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777664
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.83 E-value=59 Score=24.31 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=37.8
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI 98 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~ 98 (138)
|..+|.++...++-|+.--...+.+=..+..-...+...++....+++.-.
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888877777777777777777777777777777766543
No 42
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=56.49 E-value=24 Score=24.08 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=30.9
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+..++......|...++.|..+...+ |...+.-+.-=..|+.++...=.....+-.+++.|+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~---L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~ 74 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAI---LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666555543 221111111123455555555555556666666654
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.32 E-value=1.1e+02 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
.++..|+.++..+=.=-++||.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455543
No 44
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=54.91 E-value=5.4 Score=22.50 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 112 LKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 112 ~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
..||+-+..|++-+..-|.|+..+|+
T Consensus 3 aaleqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666554
No 45
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.46 E-value=1.1e+02 Score=26.66 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q psy8909 127 RLEAKFKQL 135 (138)
Q Consensus 127 ~LE~K~k~l 135 (138)
.|..|+.+|
T Consensus 179 ~l~~ki~~l 187 (464)
T 1m1j_B 179 SLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 46
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.54 E-value=27 Score=21.31 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHh
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQ 96 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~ 96 (138)
++.+.+..+..+++.|.-+++.
T Consensus 2 dlEekv~~Le~~ld~LqTr~Ar 23 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFAR 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666655555
No 47
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=53.03 E-value=46 Score=21.95 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~ 132 (138)
.++..-.++...+.++++.|.. +..|-..|..+|..+..+ .+++..+..|-.-|-.|.
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~ 64 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM 64 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778888888888876 788888888888888777 456667777766665554
No 48
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=52.40 E-value=25 Score=24.96 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 81 VNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 81 ~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
.+|...+..|++....+...-..|+++..++..|.++.
T Consensus 2 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 2 STLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667666666666677777777666666654
No 49
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=51.92 E-value=54 Score=22.36 Aligned_cols=40 Identities=8% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhh
Q psy8909 98 IPQLEQIDQIYDSVLKLEQAAYKL-----------DHYAKRLEAKFKQLEK 137 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~a~~L-----------D~ysk~LE~K~k~le~ 137 (138)
+.+..-+.+|++.|..|+++|... -.|+..|+.+++.|+.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666542 2577778888777753
No 50
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=51.89 E-value=38 Score=20.63 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhHHH
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQLIPQ 100 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~l~py 100 (138)
.|......+...+..|=..|++.+..
T Consensus 9 ~Le~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 9 QLGSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 51
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=51.75 E-value=47 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.5
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNNA 68 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~~ 68 (138)
--++++||+++. +=|||++|..
T Consensus 8 alNMAkFI~~Qs------LlLLEKLneL 29 (65)
T 1nkd_A 8 ALNMARFIRSQT------LTLLEKLNEL 29 (65)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHHH------HHHHHHHHHH
Confidence 357899999875 5689999976
No 52
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.73 E-value=60 Score=22.84 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~ 132 (138)
..++..-.++...+.++++.|.. +..+-..|..+|..+..+ .+++..+..|-.-|-.|+
T Consensus 53 ~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 53 DNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456777888888888875 777878888888888777 567777888876666664
No 53
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=50.90 E-value=70 Score=23.38 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQI-------DQIYDSVLKLEQAAY-------KLDHYAKRLEAKFKQL 135 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI-------D~Ie~~V~~LE~~a~-------~LD~ysk~LE~K~k~l 135 (138)
+...+..+....-.|..-..+|..|++.| +.|++++..|-.++. .|=.|-.++..++..+
T Consensus 89 l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 89 VMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443 355555555554433 2334555555555544
No 54
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=49.24 E-value=50 Score=21.18 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=10.4
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLI 98 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~ 98 (138)
|..|...|..+.....++.+....|.
T Consensus 10 ~e~l~~~A~~~~~~~~~i~~~l~~L~ 35 (98)
T 3gwk_C 10 PEELRSSAQKYTAGSQQVTEVLNLLT 35 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333
No 55
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=48.87 E-value=45 Score=20.59 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8909 78 QITVNISNSIEEQNQRYKQLIPQLEQ-IDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 78 ~~a~~l~~~~~~Ln~ky~~l~pyl~q-ID~Ie~~V~~LE~~a~~LD~y 124 (138)
+++-++..-+..+..--+.+..-.+. ++.|..++..|..++..|=.|
T Consensus 66 ~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 66 GVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444333333222233 377888888888888776554
No 56
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.78 E-value=40 Score=22.34 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
|+++.+.|.+-...+.+|-.-.+.|-.|++.
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 57
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=48.68 E-value=57 Score=21.68 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKLEQ-AAYKLDHYAKRLEAKF 132 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE~-~a~~LD~ysk~LE~K~ 132 (138)
-.++...+.++++.|.. +..+-.+|..+|.++..+-. ++..+..|-.-|-.|.
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~ 66 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL 66 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777764 77777777777777766533 4455566655544443
No 58
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=48.35 E-value=20 Score=25.22 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=31.4
Q ss_pred HHHHHHhHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYK-QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~-~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
..++......|.+... .++|++..-...+.-...++.-|..+|.++..||.
T Consensus 55 ~~~~~~~y~~l~~~W~~~l~p~l~~~~~~~~~~~~v~~FV~~ID~lV~~LE~ 106 (125)
T 3ezh_A 55 RDGQLAQLQGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDR 106 (125)
T ss_dssp HHTCHHHHHHHHHHHHHTHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777776 68888765433333345566667777777766663
No 59
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=48.26 E-value=23 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8909 109 DSVLKLEQAAYKLD-HYAKRLEAKFK 133 (138)
Q Consensus 109 ~~V~~LE~~a~~LD-~ysk~LE~K~k 133 (138)
..+++||.++++|+ .|-.+||..-+
T Consensus 23 ~nL~ELE~is~rlg~~Y~~~LeeaK~ 48 (53)
T 1x9b_A 23 RNLNELEALAVRLGKSYRIQLDQAKE 48 (53)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHchHHHHHHHHHHH
Confidence 45678999999998 68899986644
No 60
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=47.92 E-value=1e+02 Score=25.09 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
+...|.-+-.++..|.....++.+.+.++..+ ++..++.|--||..|..+-.+
T Consensus 207 ~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 207 VEEANTYTDQKMGEMNSKIKGVENKMKQIEDK---IEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 34455556667777777777666666665533 444466666666666655443
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.65 E-value=71 Score=22.54 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKL-EQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~L-E~~a~~LD~ysk~LE~K~ 132 (138)
..++..-.++...+.++++.|.. +..|-..|..+|..+..+ .+++..+..|-.-|-.|+
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKT 115 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456777888888888875 778888888888888776 456777788876666654
No 62
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=47.27 E-value=16 Score=24.11 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|..+..+||.||.++-.|
T Consensus 4 ~L~~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998766
No 63
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=47.26 E-value=93 Score=23.78 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=68.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh--hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH-
Q psy8909 29 HDPRLNELATNMFKKTADYLI--GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQID- 105 (138)
Q Consensus 29 ~~~~l~~la~~mf~kvs~yl~--~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID- 105 (138)
...+|.+|.++-=..+..|+. ..+.....+..-+...+...-..-..+...-..+...+..+++.+.++....+..|
T Consensus 39 S~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~ 118 (192)
T 2p22_C 39 SSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHS 118 (192)
T ss_dssp TTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888766455777775 33445555554444444444555566666666666667777777777655555553
Q ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QI------YDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 106 ~I------e~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
.| +.=...|..+|.+.|+=|..|+.+|.
T Consensus 119 ~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 119 EFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44 33457899999999999999998874
No 64
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=47.19 E-value=16 Score=25.61 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..|..+..+||.||.++-.|
T Consensus 12 ~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999998766
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.62 E-value=52 Score=20.68 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHhH-hHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 66 NNATITKYS-DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 66 N~~~s~kY~-~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
|++++.+|- +-++-...+...+++|.+...+|. .+|..++..+..|-++
T Consensus 10 Nr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~---~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 10 NKTAATRYRQKKRAEQEALTGECKELEKKNEALK---ERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 788888886 455566777777777776666654 3445555555555443
No 66
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=46.21 E-value=64 Score=21.56 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHh
Q psy8909 75 DMKQITVNISNSIEEQNQRYKQ 96 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ky~~ 96 (138)
++...+..|..+++.|+-|++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfAR 25 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFAR 25 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554
No 67
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=45.95 E-value=39 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 112 LKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 112 ~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
..|+.++...-.-.+.+..+++.|++
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666677777776653
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.19 E-value=61 Score=21.09 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy8909 121 LDHYAKRLEAK 131 (138)
Q Consensus 121 LD~ysk~LE~K 131 (138)
|......||..
T Consensus 64 l~~a~~kLeea 74 (81)
T 1ic2_A 64 LKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 69
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=44.91 E-value=73 Score=21.85 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHHHHHH-----HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q psy8909 26 MISHDPRLNELATNMFKKTAD-----YLIGELNSTQADYEVLEKMNNATITKYSDMKQ 78 (138)
Q Consensus 26 ~~~~~~~l~~la~~mf~kvs~-----yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~ 78 (138)
+++...+++.-.+.+...+.. -+=++++....+|.|+.|+|-.+..-|+++-+
T Consensus 19 f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~ 76 (85)
T 2ca5_A 19 FDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDA 76 (85)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777766666666654 34578999999999999999999887776654
No 70
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=44.78 E-value=20 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|..+.++||.||.++-.|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~L 36 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISL 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998766
No 71
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=44.38 E-value=58 Score=20.59 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHH----HHHHHHHHHHHH
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQL----EQIDQIYDSVLK 113 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl----~qID~Ie~~V~~ 113 (138)
-...|...+.+|++.+..|.-.+ ..||.||..|..
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 45 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567777888888888887766 468888887654
No 72
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=44.28 E-value=20 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
-|=++|++|+.++..||+.+..|
T Consensus 56 ~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 56 RYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577888888888888888765
No 73
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.14 E-value=29 Score=21.18 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ 123 (138)
|++++++|..||..+..|..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776665543
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.02 E-value=63 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=24.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.-|..-.+.|..+..++..|+.-+..|-.-...|+.++..++
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555556666666666666666666666666666554
No 75
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=44.00 E-value=19 Score=24.63 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|..+..+||.||.++-.|
T Consensus 6 ~L~~lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 6 PLLALREKISALDEKLLAL 24 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998766
No 76
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=43.66 E-value=17 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|..+.++||.||.++-.|
T Consensus 9 ~L~~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQA 27 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4778999999999998765
No 77
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=43.25 E-value=1.1e+02 Score=23.67 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
=++.+..-+.+|...-+.|.+....+++-+.+|...+ +.++..+++|..+++-+
T Consensus 87 ~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ad---s~~~~lekKvn~aq~kL 140 (201)
T 3u0c_A 87 RQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNAD---SKIKDLENKINQIQTRL 140 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666665555555554433 23444444444444433
No 78
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=42.97 E-value=1.2e+02 Score=23.84 Aligned_cols=52 Identities=27% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 66 NNATITKYSDMKQITVNISNSIEEQNQRYKQL----IPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 66 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l----~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
|..+.+.|. .+..+..++++|..-+..| ....+++|.+-..|.+.|.++|.|
T Consensus 172 n~v~~Gd~~----~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Ydl 227 (249)
T 3axj_A 172 NSVTMGDYE----RPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 227 (249)
T ss_dssp HHHHTTCCS----HHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCChH----HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555553 3445555555555444443 267899999999999999999955
No 79
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=42.41 E-value=20 Score=24.13 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~~L 114 (138)
.|..+.++||.||.++-.|
T Consensus 13 ~L~~lR~~ID~iD~~Ll~L 31 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILAL 31 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998766
No 80
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=42.12 E-value=64 Score=21.36 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
+.++|..++.-=.++-|.+.+|=..-+.+-.-....-.-...+++..+++..||
T Consensus 12 vkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 12 LKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777766655555555444444444455555555555554
No 81
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=41.62 E-value=64 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHhHHHHHH
Q psy8909 75 DMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 75 ~m~~~a~~l~~~~~~Ln~ 92 (138)
.|...|..+......+..
T Consensus 13 ~l~~~A~~~~~~~~~i~~ 30 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQS 30 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 82
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=41.07 E-value=41 Score=19.58 Aligned_cols=28 Identities=4% Similarity=0.012 Sum_probs=18.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
+.....-|..|++++-.+|.+=..||.-
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~ 35 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAE 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677888777777766666643
No 83
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.34 E-value=70 Score=20.38 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 64 KMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 64 nmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
..+......|....+....+...+..+.....++..--=.+-+....+..+++++..++.+-..
T Consensus 8 ~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~e 71 (73)
T 3htk_B 8 DIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREAD 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666665444444445556677777777777776543
No 84
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=39.56 E-value=51 Score=18.54 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
+-++|+.|..-|+--|+|++-+.+||.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456788888888888888887777775
No 85
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.21 E-value=1e+02 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
+++..|++++..|+.+...|+......+
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444333
No 86
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.08 E-value=37 Score=22.76 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
++...+++|+.--+.|+--+..| +.+++..-.+|=+....||.+++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARL------LaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARI------LAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444443333332 233455555555555555555554
No 87
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=38.99 E-value=80 Score=22.25 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
+.....+|...+..-+..|+++...|..|-.||..-+.||.+-.-==+|-+.
T Consensus 12 ~ekKi~nIVtKIDkkKnIy~~inKLlnEIseIe~d~tSle~vk~INlSYg~S 63 (107)
T 3hgf_A 12 IEKKIENIVTKIDKKKYIYDNMKKLLNEIAEIEKDKTSLEEVKNINMSYGKS 63 (107)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcccccHHHHHhcchHHHHh
Confidence 3444455555555566667777777777777777777766654333333333
No 88
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=38.87 E-value=16 Score=22.70 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~L 121 (138)
..|+++|.+|..||..+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666544
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.76 E-value=1.6e+02 Score=24.09 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 109 DSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 109 ~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
++|.+||.-+.+|.+-.+.+++.++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555556666665554
No 90
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=38.52 E-value=86 Score=24.53 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=36.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 65 MNNATITKYSDMKQITVNISNSIEEQNQRYKQL----IPQLEQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 65 mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l----~pyl~qID~Ie~~V~~LE~~a~~L 121 (138)
+|..+.+.|.. +..+..++++|..-+..| ....+++|.+-..|.+.|.++|.|
T Consensus 168 vn~v~~Gd~~~----~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Ydl 224 (240)
T 1j1j_A 168 VNSVTAGDYSR----PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 224 (240)
T ss_dssp HHHHHTTCSSH----HHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHh----HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555533 455555665555544443 377899999999999999999976
No 91
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.50 E-value=51 Score=20.51 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 113 KLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+||.+|.+|+.--..||..+..+|
T Consensus 21 klenivarlendnanlekdianle 44 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHH
Confidence 455555555444444444444443
No 92
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=38.38 E-value=65 Score=19.39 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 105 DQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 105 D~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
.++|.++..||....+|++-.+-|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444
No 93
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.92 E-value=1e+02 Score=21.64 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 55 TQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIP----QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p----yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
.....+=|+.-|........++..-..+-...+.+...+...|.. .=.+|.++..++...|.....|-.=-+.||.
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555444444444444444443333321 1244555555666666666555555555555
Q ss_pred HHHhhh
Q psy8909 131 KFKQLE 136 (138)
Q Consensus 131 K~k~le 136 (138)
.+..++
T Consensus 112 e~~~Lk 117 (129)
T 2fxo_A 112 ECSELK 117 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 94
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=37.59 E-value=66 Score=21.71 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy8909 120 KLDHYAKRLEA 130 (138)
Q Consensus 120 ~LD~ysk~LE~ 130 (138)
+|-.|-+.|..
T Consensus 73 klr~Yk~dl~~ 83 (97)
T 3onj_A 73 KLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.70 E-value=91 Score=20.64 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
+.+....|+.-..+|.+-|..|..||.-..+.|.-.+.|=+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345555555566666666666666666666666665444
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.92 E-value=94 Score=20.57 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy8909 83 ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 83 l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~L 114 (138)
|.+..++|.++-+-++.+-++|++-|..|..|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444444444433
No 97
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.82 E-value=1.2e+02 Score=21.86 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHHHHh--hHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH----HhhHHHHHH
Q psy8909 30 DPRLNELATNMFKKTADYLI--GELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY----KQLIPQLEQ 103 (138)
Q Consensus 30 ~~~l~~la~~mf~kvs~yl~--~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky----~~l~pyl~q 103 (138)
.+.|..+|..+=.++...-. |==..+....-+|-.+|- +..|.+++.....+...++.+...- .++...--+
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNi--adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNI--ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877788887773 344455667777777764 4556666655555555554433222 334445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909 104 IDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~ 134 (138)
++...+++.+|..=...|..-.++||++.+.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777777788877664
No 98
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.45 E-value=99 Score=20.67 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL----EQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L----E~~a~~LD~ysk~LE~K~k~le 136 (138)
..+-...+||+++...|..| |...+.|+.-.++--..+..|+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777555 5555555555554444444443
No 99
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.42 E-value=77 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8909 108 YDSVLKLEQAAYKLDH 123 (138)
Q Consensus 108 e~~V~~LE~~a~~LD~ 123 (138)
|.+|.+||..|..|..
T Consensus 11 ERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 11 ENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 100
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.23 E-value=1.5e+02 Score=22.80 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~L 114 (138)
..+.+.+.+|+.++..+..+
T Consensus 111 ~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 111 REIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555433
No 101
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.10 E-value=1.1e+02 Score=20.91 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKLE-QAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~LE-~~a~~LD~ysk~LE~K~ 132 (138)
-.++...+.+++..|.. +..|-..|..+|..+..+- +++..+..|-.-|-.|+
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 75 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKL 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777664 6666677777777776653 34555666655544443
No 102
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=34.00 E-value=55 Score=21.03 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8909 103 QIDQIYDSVLKLEQA 117 (138)
Q Consensus 103 qID~Ie~~V~~LE~~ 117 (138)
++|-|+.+=.+||.+
T Consensus 34 ~Ld~Ie~QQ~ELe~~ 48 (64)
T 3t97_C 34 ELDFILSQQKELEDL 48 (64)
T ss_dssp HHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 103
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.84 E-value=60 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
-.-+++.+|++++..|+.....|+.....++.-
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888888888887777776665543
No 104
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=33.66 E-value=58 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy8909 120 KLDHYAKRLEAKFKQ 134 (138)
Q Consensus 120 ~LD~ysk~LE~K~k~ 134 (138)
+++.|+..||.+.+.
T Consensus 25 ~lE~~~~~Lee~t~~ 39 (66)
T 3hls_A 25 ELEMLTDRLQLTLRA 39 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 105
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.28 E-value=1.6e+02 Score=24.30 Aligned_cols=13 Identities=23% Similarity=0.112 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy8909 107 IYDSVLKLEQAAY 119 (138)
Q Consensus 107 Ie~~V~~LE~~a~ 119 (138)
.+.+|..|++.+.
T Consensus 38 ~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 38 NQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 106
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=32.98 E-value=92 Score=19.57 Aligned_cols=32 Identities=3% Similarity=0.008 Sum_probs=15.0
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ 103 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q 103 (138)
.|..|...|..+.....+++.....|...++.
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444444333
No 107
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=32.78 E-value=67 Score=26.49 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ 123 (138)
+|+.++++|..||..+..+..
T Consensus 36 ~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 36 VLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555443
No 108
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.56 E-value=45 Score=21.12 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8909 103 QIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~L 121 (138)
.|+.++.+|..||.++..|
T Consensus 46 ~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665544
No 109
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.47 E-value=76 Score=18.47 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 106 QIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 106 ~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
|+|++|.+|..-.+.|..-+-+|
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444433333333333
No 110
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.36 E-value=1.1e+02 Score=20.32 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 71 TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV------------LKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 71 ~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V------------~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
.+|..+..-...+...+..++....++.--+..|..+++.. ...+.+...|+.-...|+..++.+++
T Consensus 13 ~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~ 91 (117)
T 2zqm_A 13 GQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALER 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555444321 24556666666677777777766654
No 111
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=32.09 E-value=46 Score=22.71 Aligned_cols=10 Identities=10% Similarity=0.544 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy8909 120 KLDHYAKRLE 129 (138)
Q Consensus 120 ~LD~ysk~LE 129 (138)
+|..|-+.|.
T Consensus 75 klr~Yk~dL~ 84 (102)
T 1vcs_A 75 RMRSYKQEMG 84 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444544443
No 112
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.44 E-value=1.1e+02 Score=20.20 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~ 119 (138)
.+|+.+|.++.-||+-+.
T Consensus 52 ~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 52 EKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555554443
No 113
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=31.33 E-value=1.3e+02 Score=20.78 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=40.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHH-----HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q psy8909 25 PMISHDPRLNELATNMFKKTAD-----YLIGELNSTQADYEVLEKMNNATITKYSDMKQ 78 (138)
Q Consensus 25 ~~~~~~~~l~~la~~mf~kvs~-----yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~ 78 (138)
+++....++..-...+++.+.. -+=+++++...+|++..|++-++..-|+++.+
T Consensus 24 ~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~KD~~q 82 (92)
T 2g0u_A 24 AFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMKDIDS 82 (92)
T ss_dssp GGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777766767766643 34589999999999999999999988887643
No 114
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.31 E-value=1.2e+02 Score=20.25 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
+..+-.+|..+..++..|...+..|+.....|+.+++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666554
No 115
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.01 E-value=1.3e+02 Score=20.82 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 88 EEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 88 ~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.++..--.+|..-+.+|. ..+..+++.-...||.--++|+.|+..|+
T Consensus 25 ~e~e~~k~eL~~~~~~~~--~~~~~k~~eq~~~le~lk~eL~~~~~el~ 71 (107)
T 2no2_A 25 VDLEREKKELEDSLERIS--DQGQRKTQEQLEVLESLKQELATSQRELQ 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444 56677788888999999999999887765
No 116
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=30.93 E-value=98 Score=19.22 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHH----HHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIPQLE----QIDQIYDSVLK 113 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~pyl~----qID~Ie~~V~~ 113 (138)
...|...+.+|++.+..|.-.+. .||.||..|..
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 48 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVES 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888888877663 57777777654
No 117
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=30.63 E-value=52 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.2
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|..-+.-++..+..++.|++|+.+||..+-.
T Consensus 12 pvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~ 44 (197)
T 1zxz_A 12 PVLHEKAREVDPGEIGSERIQKIIDDMIKVMRL 44 (197)
T ss_dssp GGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCceeCCcccCCCHHHHHHHHHHHHHHHh
Confidence 667776666655555679999999999998853
No 118
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.38 E-value=1.1e+02 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 79 ITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY 119 (138)
Q Consensus 79 ~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~ 119 (138)
.+.-|...++.+.......+.+-.+++.+..++..|++-+.
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666677777777777776544
No 119
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=29.53 E-value=1.2e+02 Score=19.72 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHHHHHHhhHHHH----HHHHHHHHHHHH
Q psy8909 80 TVNISNSIEEQNQRYKQLIPQL----EQIDQIYDSVLK 113 (138)
Q Consensus 80 a~~l~~~~~~Ln~ky~~l~pyl----~qID~Ie~~V~~ 113 (138)
...|...+.+|++.+..|.-.+ ..||.||..|..
T Consensus 23 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 60 (83)
T 1sfc_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456666778888888877666 457888877654
No 120
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=29.47 E-value=2.2e+02 Score=23.99 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHh--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 58 DYEVLEKMNNATITKYSDMKQITVNISNS--------IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 58 dy~LLEnmN~~~s~kY~~m~~~a~~l~~~--------~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
-+.-||+=-+....||..+.....+-... .+++|.+.+.|-.--..|-+|.++..+=|+-|.+|-.=.+-+-
T Consensus 26 rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l~~~~e~~T~imEs~p~DeeEa~kLlhKh~~~~ 105 (384)
T 3tnf_B 26 KLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIK 105 (384)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccHHHHHHHHHhhcccc
Confidence 34457777888889999998888776553 5678888888877777788888888888888888888888888
Q ss_pred HHHHhhh
Q psy8909 130 AKFKQLE 136 (138)
Q Consensus 130 ~K~k~le 136 (138)
.|+.+|+
T Consensus 106 ~KlaNLQ 112 (384)
T 3tnf_B 106 AKLANLQ 112 (384)
T ss_dssp HHHHHHH
T ss_pred hhhhhHH
Confidence 8887775
No 121
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=29.36 E-value=19 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~L 121 (138)
..|+.+++.|..||..+..|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888776655
No 122
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=29.33 E-value=1.1e+02 Score=19.55 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~ 127 (138)
-.-+++..|++++.+|..+...|+.+...
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777765543
No 123
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=29.16 E-value=1.3e+02 Score=20.26 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 62 LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 62 LEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
+.++|..++.-=.++.|.+.+|=..-+.+-.--...-.-...+++...++..+|
T Consensus 24 vkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 24 VRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666665554444444444443334444444444444444
No 124
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=29.08 E-value=1.4e+02 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
...+|+....|+.|...+|+.-..++.||
T Consensus 171 ~~~l~q~l~tle~y~~~ld~~~~~L~~LE 199 (377)
T 3c1y_A 171 ISKVTQAISTLEKYKDNFNKLLSELEVLE 199 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 35667777888888888888888888888
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.05 E-value=1.8e+02 Score=24.00 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQ 116 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~ 116 (138)
.+|++++.+|..|+.
T Consensus 40 ~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445554443
No 126
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.89 E-value=2.9e+02 Score=24.01 Aligned_cols=57 Identities=4% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 67 NATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDH 123 (138)
Q Consensus 67 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ 123 (138)
+....+...++..-+.+++.+..++..-+.....+.+..+|.+++..||+.+..++.
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666655544444566666667777777666666555543
No 127
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=28.87 E-value=1.1e+02 Score=24.74 Aligned_cols=47 Identities=6% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHH--HHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 59 YEVLEKMNNATI--TKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 59 y~LLEnmN~~~s--~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
..||+.+|+... .-..++.+.|..++..++++-+...++..|++++.
T Consensus 215 ~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE 263 (319)
T 2p90_A 215 LKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALE 263 (319)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555443 22345555555555555555555555555554443
No 128
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=28.69 E-value=1.5e+02 Score=20.54 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 74 SDMKQITVNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 74 ~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
.++++.|..|.++...|++.-..|.-.+..++
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46677777777777777777777666665553
No 129
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=28.19 E-value=1e+02 Score=24.74 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHHH
Q psy8909 45 ADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNIS----NSIEEQNQRYKQLIPQLEQIDQIY 108 (138)
Q Consensus 45 s~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~----~~~~~Ln~ky~~l~pyl~qID~Ie 108 (138)
+++=.+|..-...=-++|.+||+....+|.=+...|..+= ...+.|..-.+-+-|||+|-.+-|
T Consensus 156 sKLssAEtaYkqvcsDiInkMnkll~n~~riineaasavwstqlqyakaleaaanpivpylqqeeqee 223 (294)
T 3caz_A 156 QKFKDAEAAYSSVCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYAKALEAAANPIVPYLQQEEQEE 223 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGCCC----
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhhh
Confidence 3444455555555567788888887777777666665542 233445555555677777755544
No 130
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.13 E-value=1.8e+02 Score=21.51 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy8909 78 QITVNISNSIEEQNQRYKQ-LIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 78 ~~a~~l~~~~~~Ln~ky~~-l~pyl~qID~Ie~~V~~L 114 (138)
.+...+...+..++++|.. +.|+...|..++..|..+
T Consensus 34 ~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 34 EIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666665 667766666666665543
No 131
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=28.01 E-value=1.6e+02 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHH
Q psy8909 60 EVLEKMNNATITKYSDMKQITVNISNSIEEQNQR 93 (138)
Q Consensus 60 ~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~k 93 (138)
.+=...-..+..=|..+..+|.+|++.++.|.+-
T Consensus 43 ~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDeN 76 (115)
T 4gwp_A 43 SVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76 (115)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456788899999999999999999999998864
No 132
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.37 E-value=2e+02 Score=21.76 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q psy8909 126 KRLEAKFKQL 135 (138)
Q Consensus 126 k~LE~K~k~l 135 (138)
+.|+.|+..|
T Consensus 93 ~elq~ri~~L 102 (168)
T 3o0z_A 93 GDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 133
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=27.17 E-value=2.2e+02 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHH
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIP 99 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p 99 (138)
+..+|..-...+.++.++++.++++-.+|+|
T Consensus 115 Ainny~~Ads~~~~lekKvn~aq~kLs~L~P 145 (201)
T 3u0c_A 115 QINKLKNADSKIKDLENKINQIQTRLSELDP 145 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666666666666666654
No 134
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=27.07 E-value=1.3e+02 Score=19.96 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~L 121 (138)
++.|+..+..|++++..+
T Consensus 56 ~~~i~~~~~~L~~~~~~i 73 (113)
T 1ud0_A 56 KEEFEHQQKELEKVCNPI 73 (113)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544433
No 135
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.03 E-value=2.5e+02 Score=22.88 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 56 QADYEVLEKMNNATITK 72 (138)
Q Consensus 56 ~~dy~LLEnmN~~~s~k 72 (138)
.+|+...-.+-..+..+
T Consensus 198 ~e~l~~F~~l~~~T~~R 214 (426)
T 1lrz_A 198 EEELPIFRSFMEDTSES 214 (426)
T ss_dssp GGGHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46666665555555443
No 136
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=26.91 E-value=1.9e+02 Score=21.31 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
..+..+..+|+.+|.++..++.-+-+
T Consensus 157 ~~~~~~~~~i~~lE~~~D~l~~~~~~ 182 (227)
T 2olt_A 157 DFVAKMINELDIIEEDTDDLQIQLRR 182 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777655433
No 137
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=26.81 E-value=2.2e+02 Score=22.00 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy8909 60 EVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE----QAAYKLDHYAKRL 128 (138)
Q Consensus 60 ~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE----~~a~~LD~ysk~L 128 (138)
+-.++|+.+.-.||.-+.....+=...+..=++.|.-|..-=-.+++|+++|..+- ++-.....||++.
T Consensus 113 kqa~~l~~~~k~RY~~~~~l~~~Y~k~l~~EKeLy~~Lk~k~~~~~~l~eki~~vN~~y~~~~~~FN~yTk~y 185 (199)
T 2ap3_A 113 KEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVL 185 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998888888877777766533334556666665553 2336667777765
No 138
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.52 E-value=2.7e+02 Score=23.17 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909 103 QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 103 qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l 135 (138)
.|.+++..+..+.+...+-+.--++|-+.+..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 25 KIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444444455555544443
No 139
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.50 E-value=3e+02 Score=23.38 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 66 NNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLD 122 (138)
Q Consensus 66 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD 122 (138)
-+....+...++..-+.+++.+..++..-+.....+.++.+|.+++..||+....++
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544334455566666666666666666555544
No 140
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=26.31 E-value=37 Score=23.60 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy8909 96 QLIPQLEQIDQIYDSVL 112 (138)
Q Consensus 96 ~l~pyl~qID~Ie~~V~ 112 (138)
.|..+.++||.||.++-
T Consensus 4 ~L~~lR~~ID~ID~~il 20 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKIL 20 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788999999999987
No 141
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=26.25 E-value=52 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTA 45 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs 45 (138)
|.|...+ +|+.+-++.|++|+.+||..+-
T Consensus 12 p~Lr~~a---~~V~~~d~~l~~li~dM~~Tm~ 40 (156)
T 1ws0_A 12 EVLETPC---ERVINFDKKLVKLLKDMHETML 40 (156)
T ss_dssp GGGGSCC---BCCCCCCHHHHHHHHHHHHHHH
T ss_pred hHHhhcc---ccCCCCCHHHHHHHHHHHHHHH
Confidence 5566655 3445567999999999999874
No 142
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=26.23 E-value=49 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=22.6
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|..-+.-. .+-+++|++|+.+||..+-.
T Consensus 14 pvLr~~a~pV---~~~d~~l~~Li~dM~eTM~~ 43 (190)
T 3u04_A 14 KRLSLCSEEV---EKVDQSIRKLVDDMFETMHA 43 (190)
T ss_dssp GGGGSCCBCC---SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccceeC---CCCCHHHHHHHHHHHHHHHH
Confidence 6666666444 45679999999999998753
No 143
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=26.19 E-value=84 Score=25.91 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH----hHhHHHHHHHHHHhHHHHHHH-HHhhHHHHHHHH
Q psy8909 58 DYEVLEKMNNATITK----YSDMKQITVNISNSIEEQNQR-YKQLIPQLEQID 105 (138)
Q Consensus 58 dy~LLEnmN~~~s~k----Y~~m~~~a~~l~~~~~~Ln~k-y~~l~pyl~qID 105 (138)
=..||+.+++..... ..++.+.|..++..+.++-+. ..++..|++++.
T Consensus 217 A~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE 269 (325)
T 3e35_A 217 ALTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLE 269 (325)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 345666666655444 335666666666666666555 555655555543
No 144
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=25.98 E-value=2.1e+02 Score=22.82 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 83 ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 83 l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
|.+.-..+-...+.++.|+|-|..|-.+...+-..--.-|.|-
T Consensus 93 ihkhgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYK 135 (294)
T 3caz_A 93 IHKHGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYK 135 (294)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444555567788899999999999999998888888885
No 145
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.97 E-value=1.4e+02 Score=20.72 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
.++..+...+..|++-=..||.+.+.+-..++.+.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777777777777666653
No 146
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=25.91 E-value=1.7e+02 Score=24.33 Aligned_cols=14 Identities=0% Similarity=0.273 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy8909 115 EQAAYKLDHYAKRL 128 (138)
Q Consensus 115 E~~a~~LD~ysk~L 128 (138)
|+++.+++.|-.+.
T Consensus 329 dei~~efErfL~~~ 342 (351)
T 2wam_A 329 DELGAEFERFLAQQ 342 (351)
T ss_dssp ---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66777777776654
No 147
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.77 E-value=2.1e+02 Score=21.41 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy8909 56 QADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ-AAYKLDHYAKRL 128 (138)
Q Consensus 56 ~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~-~a~~LD~ysk~L 128 (138)
..-..-|+........+..++......=.+.++.++.-+..| --+...+++++.+|++ --.-+|.|..+-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL---qlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG---TIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777766544444 4567778888999988 667778887653
No 148
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=25.26 E-value=3.7e+02 Score=24.06 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=22.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMKQI 79 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~ 79 (138)
|..-++.+..|.+-||.+=..-.-+|..+...
T Consensus 14 l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 14 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 34455667778888888888777788877644
No 149
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.15 E-value=95 Score=17.19 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8909 119 YKLDHYAKRLEAKFKQL 135 (138)
Q Consensus 119 ~~LD~ysk~LE~K~k~l 135 (138)
..|+.-...||.|+.++
T Consensus 11 aalesklqalekkleal 27 (31)
T 3ljm_A 11 AALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444444
No 150
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.06 E-value=1.5e+02 Score=19.39 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909 70 ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV------------LKLEQAAYKLDHYAKRLEAKFKQLEK 137 (138)
Q Consensus 70 s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V------------~~LE~~a~~LD~ysk~LE~K~k~le~ 137 (138)
+.+|..+..-...+...+..++....++.--+.-|..+++.- ...+.+...|+.-...++.+++.+++
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544444444444321 13455566666666666666666654
No 151
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.87 E-value=2.2e+02 Score=22.47 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q psy8909 37 ATNMFKKTA 45 (138)
Q Consensus 37 a~~mf~kvs 45 (138)
+..+..++.
T Consensus 65 ~~~~~~k~~ 73 (357)
T 3rrk_A 65 WEAVVSQAE 73 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 152
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.76 E-value=1.9e+02 Score=20.44 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8909 98 IPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 98 ~pyl~qID~Ie~~V~~LE~~ 117 (138)
.-|..++.+||-=+..-+..
T Consensus 42 DFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 42 EFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45888888888777766554
No 153
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=24.76 E-value=55 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|.+-+ +|+..-+++|.+|+.+||..+-.
T Consensus 9 pvLr~~a---~~V~~~d~~l~~Li~dM~eTM~~ 38 (193)
T 3pn3_A 9 PILRAKN---KRIDIFDENLKNLVDAMFDVMYK 38 (193)
T ss_dssp GGGTSCC---BCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC---ccCCCCCHHHHHHHHHHHHHHHH
Confidence 4555555 34555689999999999998753
No 154
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=24.57 E-value=56 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=21.9
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|..-+ +|+.+-++.|++|+.+||..+-.
T Consensus 11 p~Lr~~a---~~V~~~d~~l~~li~dM~~Tm~~ 40 (168)
T 1xeo_A 11 ERLRKVA---KPVEEVNAEIQRIVDDMFETMYA 40 (168)
T ss_dssp GGGGCCC---BCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHhhcc---ccCCCCCHHHHHHHHHHHHHHHH
Confidence 4565555 34445689999999999998843
No 155
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.53 E-value=2e+02 Score=20.73 Aligned_cols=65 Identities=8% Similarity=0.204 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q psy8909 41 FKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQID 105 (138)
Q Consensus 41 f~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID 105 (138)
|-.-..-|+.++..-....+-|.+++...-.--.....+-..|...+.+.+.+...++..|+.|+
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667788888888888888877653222222333334444444444545555544444443
No 156
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=24.43 E-value=90 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 99 PQLEQIDQIYDSVLKLEQAAYKLDHYA 125 (138)
Q Consensus 99 pyl~qID~Ie~~V~~LE~~a~~LD~ys 125 (138)
-.-++++.|++++..|+.....|+.+.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778887777777777653
No 157
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.21 E-value=1.8e+02 Score=19.99 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~y 124 (138)
+++.-..++...++++.+...+.+++.+...|+..
T Consensus 10 ~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333445556666666666666666666666543
No 158
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=24.09 E-value=1.3e+02 Score=23.52 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQI-------DQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI-------D~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
+-+.+..|...+..++..-.+|+...++| +.+. .+|+.++..+-.-...+-.+++.|+
T Consensus 33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~---~~l~~l~~~i~~~~~~i~~~Lk~l~ 97 (267)
T 1dn1_B 33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIE 97 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444444433 1122 2344444444455555555555553
No 159
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=24.01 E-value=58 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|...+ +|+.+.++.|++|+.+||..+-.
T Consensus 17 pvLr~~a---~~V~~~d~~l~~Li~dM~eTM~~ 46 (188)
T 1rl4_A 17 PILRRRS---EEVTNFDDNLKRVVRKMFDIMYE 46 (188)
T ss_dssp GGGGSCC---BCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHhccc---ccCCCCCHHHHHHHHHHHHHHHH
Confidence 5666655 44555689999999999998844
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.86 E-value=1.3e+02 Score=18.43 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k 133 (138)
+.|++++..|..|+.--..|-.-...|...+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444433
No 161
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=23.77 E-value=59 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=22.6
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|.+.+. |+.+-+++|++|+.+||..+-.
T Consensus 24 pvLr~~a~---~V~~~d~~l~~Li~dM~eTM~~ 53 (180)
T 1n5n_A 24 PRLRTIAK---PVEVVDDAVRQLIDDMFETMYE 53 (180)
T ss_dssp GGGGCBCB---CCSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHhcccc---cCCCCCHHHHHHHHHHHHHHHH
Confidence 66666664 4445679999999999998843
No 162
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=23.70 E-value=3.2e+02 Score=22.81 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHH
Q psy8909 76 MKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYD------SVLKLEQAAYKL 121 (138)
Q Consensus 76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~------~V~~LE~~a~~L 121 (138)
+......+.....+..+....+..+-.|+.+|+. .+..|++....|
T Consensus 188 ~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L 239 (517)
T 4ad8_A 188 WREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRL 239 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 3333333333333333344455555566666665 555555555554
No 163
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=23.54 E-value=4.2e+02 Score=24.14 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=17.9
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHhHhHH
Q psy8909 48 LIGELNSTQADYEVLEKMNNATITKYSDMK 77 (138)
Q Consensus 48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~ 77 (138)
|...++.+..+++-|+.+=..-.-+|..+.
T Consensus 149 lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~ 178 (683)
T 1yvl_A 149 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQ 178 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666554
No 164
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=23.47 E-value=55 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=22.1
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTA 45 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs 45 (138)
|-|.+.+.-. .+-++.|++|+.+||..+-
T Consensus 22 pvLr~~a~~V---~~~d~~l~~Li~dM~eTM~ 50 (176)
T 1lme_A 22 PVLRKRAKPV---TKFDENLKKTIERMIETMY 50 (176)
T ss_dssp GGGTSCCBCC---CBCSHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccC---CcCCHHHHHHHHHHHHHHH
Confidence 5676666444 4467999999999999884
No 165
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.43 E-value=1.6e+02 Score=23.09 Aligned_cols=49 Identities=18% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy8909 69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQA 117 (138)
Q Consensus 69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~ 117 (138)
..=.......+.+.+-.++.-=+++...+.+++++.++..+++..|.+-
T Consensus 115 ~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~E 163 (250)
T 2ve7_C 115 LCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAA 163 (250)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777788888888877777777777766666665555555554
No 166
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=23.40 E-value=36 Score=23.87 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 90 QNQRYKQLIPQLEQID----QIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 90 Ln~ky~~l~pyl~qID----~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
.++...+|+..+.+|. .+|+.+..+|..+.-+-..-+.|
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L 74 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554 35666666666665444444444
No 167
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=23.31 E-value=3.6e+02 Score=23.59 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=26.4
Q ss_pred HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy8909 72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKL 114 (138)
Q Consensus 72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~L 114 (138)
.|......+..+=..... +.-+..|.|||++|-++-.++...
T Consensus 104 ~~~~~~s~~~~~W~~Ar~-~nDf~~F~P~L~~vv~l~re~A~~ 145 (505)
T 3dwc_A 104 RKTVLTTKAHQVWKTCRE-KNDFAGFLPTLKELIALFREEGKL 145 (505)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333433 555788999999999888887765
No 168
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=23.23 E-value=97 Score=18.96 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 113 KLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE~ 130 (138)
.|+....+|+.-+++||.
T Consensus 24 ~l~~Lt~kL~~vt~rle~ 41 (47)
T 1aq5_A 24 LINTLQQKLEAVAKRIEA 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555553
No 169
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.12 E-value=1.8e+02 Score=19.73 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE 129 (138)
++|+.=.++|..||..+...-...+.|+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443
No 170
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.99 E-value=1.1e+02 Score=17.38 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q psy8909 95 KQLIPQLEQIDQIYDSVLKLEQAA 118 (138)
Q Consensus 95 ~~l~pyl~qID~Ie~~V~~LE~~a 118 (138)
...+..+..+-.++.+|..|-.++
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444455666677777777665543
No 171
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=22.89 E-value=1.2e+02 Score=24.59 Aligned_cols=36 Identities=8% Similarity=0.279 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF 132 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~ 132 (138)
+.+..++-.+|+.+|.++-+--.++-+|++.||.++
T Consensus 231 ~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~ 266 (319)
T 2p90_A 231 LLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQY 266 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 444445555555555555555555556666666554
No 172
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.84 E-value=1.7e+02 Score=20.81 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
.|++.+++++..|+.+...||.....+
T Consensus 87 ~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 87 FQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666554433
No 173
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.78 E-value=2.1e+02 Score=20.27 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 97 l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
..-+-..|+.++.++..|+.....+-.-...++..+..+.
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555554443
No 174
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=22.75 E-value=1.7e+02 Score=23.60 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHh--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 57 ADYEVLEKMNNATITKYSDMKQITVNISNS--------IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL 128 (138)
Q Consensus 57 ~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~--------~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~L 128 (138)
.-+.=||+=-+....||..+.....+-... .+++|.+.+.|-.--..|-+|.++..+=|+-|.+|-.=.+.+
T Consensus 42 ~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se~~T~imEs~p~DeeEa~kLlhKh~~~ 121 (267)
T 3tkl_B 42 KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDI 121 (267)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccHHHHHHHHHHhccc
Confidence 345567777788889999998888776654 467777777777666668888888888888899998888888
Q ss_pred HHHHHhhh
Q psy8909 129 EAKFKQLE 136 (138)
Q Consensus 129 E~K~k~le 136 (138)
-.|+.+|+
T Consensus 122 ~~KlaNLQ 129 (267)
T 3tkl_B 122 KAKLANLQ 129 (267)
T ss_dssp HHHHHHHH
T ss_pred chhhhhHH
Confidence 88888775
No 175
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.61 E-value=1.5e+02 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA 130 (138)
Q Consensus 100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~ 130 (138)
.-+++.+|++++..|.+....|+.+...++.
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777666653
No 176
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=22.60 E-value=60 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=21.9
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|.+-+. |+..-++.|++|+.+||..+-.
T Consensus 11 pvLr~~a~---~V~~~d~~l~~li~dM~~Tm~~ 40 (154)
T 3uwb_A 11 RCLRQKSE---EVEFDKKEMSELYDQMCEAMWA 40 (154)
T ss_dssp GGGTSCCB---CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccce---eCCcCCHHHHHHHHHHHHHHHH
Confidence 55666554 4444678999999999998843
No 177
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.45 E-value=1e+02 Score=16.67 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=13.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909 89 EQNQRYKQLIPQLEQIDQIYDSVLKLEQ 116 (138)
Q Consensus 89 ~Ln~ky~~l~pyl~qID~Ie~~V~~LE~ 116 (138)
.|++|...|. +.|-.+|=.+..||+
T Consensus 4 rlkqknarlk---qeiaaleyeiaaleq 28 (28)
T 3ra3_B 4 RLKQKNARLK---QEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHC-
T ss_pred HHHHhhhHHH---HHHHHHHHHHHHhcC
Confidence 4566665543 455566666665553
No 178
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.43 E-value=3.2e+02 Score=22.25 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQ 116 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~ 116 (138)
+-|+.|+++|..|+.
T Consensus 386 ~~~~~~~~~i~~~~~ 400 (463)
T 2xz3_A 386 QDQQRLITAINQTHY 400 (463)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 179
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=22.23 E-value=1.7e+02 Score=21.35 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK 120 (138)
Q Consensus 77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~ 120 (138)
.+++.-++.-.+.+...-......+..+-..+..-+.||.+|.+
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAK 48 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAK 48 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHH
Confidence 34444444444444444444444444444433334556665554
No 180
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=22.09 E-value=66 Score=24.38 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=22.1
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTA 45 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs 45 (138)
|.|..-+.-++ .|.++++++|+.+||..+-
T Consensus 13 pvLr~~a~~V~--~~~~~~l~~li~dM~eTm~ 42 (188)
T 2os0_A 13 PTLRAVAEEVP--VPITEEDRQLGEDMLTFLK 42 (188)
T ss_dssp GGGGSCCBCCC--SSCCHHHHHHHHHHHHHHH
T ss_pred hHHhcCceeCC--CCCCHHHHHHHHHHHHHHH
Confidence 56666554333 1578999999999999984
No 181
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.83 E-value=1.8e+02 Score=19.84 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909 102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131 (138)
Q Consensus 102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K 131 (138)
.+|++....+..|..-.+++-.|..+||.+
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777777777788888888887765
No 182
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.77 E-value=1.9e+02 Score=23.78 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy8909 125 AKRLEAKF 132 (138)
Q Consensus 125 sk~LE~K~ 132 (138)
..+||.++
T Consensus 44 I~~LE~~v 51 (323)
T 1lwu_B 44 MQRMEEAI 51 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 183
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=21.67 E-value=2.7e+02 Score=21.97 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=37.6
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q psy8909 73 YSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA-----KRLEAK 131 (138)
Q Consensus 73 Y~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys-----k~LE~K 131 (138)
|.++...|..|.+-+..+=..-..=.-+|+-|.+|-..+-+|=++|+....+. +.||.+
T Consensus 93 fqel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~ 156 (213)
T 3ajm_A 93 FQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQ 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34444444444444444443333345577788999999999999999887763 455544
No 184
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=21.64 E-value=1.2e+02 Score=23.22 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy8909 82 NISNSIEEQNQRYKQLIPQLEQIDQIYDSV 111 (138)
Q Consensus 82 ~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V 111 (138)
.|..-.++..+--+.|++|-+.+|+||+..
T Consensus 74 sL~~v~~qF~~~Le~lq~Fwd~ldeID~~~ 103 (186)
T 3zqs_A 74 SLISIYSQFLAAIESLKAFWDVMDEIDEKT 103 (186)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345555566666678999999999999863
No 185
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.45 E-value=2e+02 Score=19.51 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8909 104 IDQIYDSVLKLEQAAYKL 121 (138)
Q Consensus 104 ID~Ie~~V~~LE~~a~~L 121 (138)
+++|+..+..|++++..+
T Consensus 70 ~e~ik~k~~eL~~~~~~i 87 (120)
T 2p32_A 70 KEEFEHQQKDLEGLANPI 87 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 186
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.44 E-value=1.6e+02 Score=18.89 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHh-----HhHHHHHHHHHHhHHHHHHHHHhhHH
Q psy8909 55 TQADYEVLEKMNNATITKY-----SDMKQITVNISNSIEEQNQRYKQLIP 99 (138)
Q Consensus 55 t~~dy~LLEnmN~~~s~kY-----~~m~~~a~~l~~~~~~Ln~ky~~l~p 99 (138)
|.+|-++|++.= .+| .....||.-+.+..++...+|..|..
T Consensus 12 T~eE~k~fe~al----~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 12 TEEDLSQLTRSM----VKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CHHHHHHHHHHH----HHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345555555532 245 34666777777888888888877643
No 187
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.15 E-value=1.9e+02 Score=19.28 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8909 113 KLEQAAYKLDHYAKRLE 129 (138)
Q Consensus 113 ~LE~~a~~LD~ysk~LE 129 (138)
+|+.++.+|+.=...|+
T Consensus 43 KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 188
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.12 E-value=1.5e+02 Score=18.06 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHHhHh-HHHHHHHHHHhHHHHHHHHHhh
Q psy8909 66 NNATITKYSD-MKQITVNISNSIEEQNQRYKQL 97 (138)
Q Consensus 66 N~~~s~kY~~-m~~~a~~l~~~~~~Ln~ky~~l 97 (138)
|+.++.++-. =++-...+...+..|...+..|
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 9 NRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666542 2233444444455554444443
No 189
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=20.96 E-value=72 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=21.9
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|..-+ +|+.+-++.|++|+.+||..+-.
T Consensus 11 pvLr~~a---~pV~~~d~~l~~Li~dM~eTM~~ 40 (188)
T 2w3t_A 11 ERLRKVA---KPVEEVNAEIQRIVDDMFETMYA 40 (188)
T ss_dssp GGGGCCC---BCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHhhcC---ccCCCCCHHHHHHHHHHHHHHHh
Confidence 5565555 34445679999999999998743
No 190
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=20.92 E-value=81 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=22.6
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|-|..-+.-.+..+-.++.|++|+.+||..+-.
T Consensus 13 pvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~ 45 (183)
T 3g5k_A 13 PVLRGVAAPVERAQLGGPELQRLTQRLVQVMRR 45 (183)
T ss_dssp GGGTSCCBCCCGGGTTCHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCeeCCcccCCCHHHHHHHHHHHHHHHH
Confidence 556665544433223579999999999998754
No 191
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=20.91 E-value=74 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=22.7
Q ss_pred ccccccCCcccCCCCCchHHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTAD 46 (138)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~ 46 (138)
|.|..-+.- +..-+++|++|+.+||..+-.
T Consensus 27 pvLr~~a~~---V~~~d~~l~~Li~dM~eTM~~ 56 (192)
T 4dr9_A 27 RVLRQPAKR---VSRIDDELRQTIRQMLQTMYS 56 (192)
T ss_dssp GGGGSCCCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccc---CCCCCHHHHHHHHHHHHHHHH
Confidence 667666644 444679999999999998854
No 192
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.84 E-value=2.4e+02 Score=20.27 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhhh
Q psy8909 113 KLEQAAYKLDHY---AKRLEAKFKQLE 136 (138)
Q Consensus 113 ~LE~~a~~LD~y---sk~LE~K~k~le 136 (138)
..|.++..|+++ -..++.|++.|+
T Consensus 35 ~AE~A~~~L~~~~~m~~~i~ek~~~i~ 61 (119)
T 2avr_X 35 QADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788877 355666665554
No 193
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=20.70 E-value=74 Score=24.09 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=22.0
Q ss_pred ccccccCCcccCCC-CCchHHHHHHHHHHHHHH
Q psy8909 14 TSLSTSTSSFEPMI-SHDPRLNELATNMFKKTA 45 (138)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~l~~la~~mf~kvs 45 (138)
|.|..-+. |+. |.++++.+|+.+||..+-
T Consensus 14 pvLr~~a~---~V~~~~~~~l~~li~dM~eTm~ 43 (185)
T 2okl_A 14 PILRNVAE---EVSLPASEEDTTTLKEMIEFVI 43 (185)
T ss_dssp GGGGSCCB---CCCSSCCHHHHHHHHHHHHHHH
T ss_pred hHHhcCce---eCCCCCCHHHHHHHHHHHHHHH
Confidence 56666554 444 578999999999999983
No 194
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.64 E-value=2.3e+02 Score=19.98 Aligned_cols=67 Identities=16% Similarity=0.315 Sum_probs=41.2
Q ss_pred HHHhhHhhhhHHHH--HHHHHHHHH-HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909 46 DYLIGELNSTQADY--EVLEKMNNA-TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE 115 (138)
Q Consensus 46 ~yl~~El~~t~~dy--~LLEnmN~~-~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE 115 (138)
.|++-|++-+-++| .-|++|.+. -+..|..+....+.+...-..|......+ -.+|.+++..|..|-
T Consensus 9 eFl~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~---~~~v~eLe~everL~ 78 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRL---DARVRELELELDRLR 78 (104)
T ss_dssp -----CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHH
Confidence 45555555555544 457777764 57889999998888888777777664333 455556665555553
No 195
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=20.51 E-value=2.1e+02 Score=19.40 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q psy8909 59 YEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92 (138)
Q Consensus 59 y~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ 92 (138)
-..=+.+-.++..=|..+..++..|++.+..|.+
T Consensus 39 ~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdE 72 (86)
T 3r84_A 39 ESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE 72 (86)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999998888875
No 196
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=20.25 E-value=65 Score=21.08 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909 87 IEEQNQRYKQLIPQLEQIDQIYD---SVLKLEQAAYKLDHYAKRLEAKFKQLE 136 (138)
Q Consensus 87 ~~~Ln~ky~~l~pyl~qID~Ie~---~V~~LE~~a~~LD~ysk~LE~K~k~le 136 (138)
...+|..+.+|...+-....-++ ++..|-.++ .|.+.|+..+++++
T Consensus 17 r~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~Ai----eYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 17 RRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAV----QVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 34566666666655553322222 344454444 27777777776654
Done!