RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8909
(138 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.14
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 19/71 (26%)
Query: 6 ENSLSNKMTSLSTSTSSFEPMISHDPRLNELATN-MFKKTADYLIGELNSTQ-------- 56
EN + ++ E + +NE +T+ F+ G L++TQ
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEK----GLLSATQFTQPALTL 1738
Query: 57 ---ADYEVLEK 64
A +E L+
Sbjct: 1739 MEKAAFEDLKS 1749
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.20
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 49 IGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLI--PQLEQ--- 103
+ NS + E+L+K+ ++ + NI I ++L+ E
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 104 -IDQIYDS-VLK 113
+ + ++
Sbjct: 249 VLLNVQNAKAWN 260
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.45
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 86 SIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
SI + + ++ + +L+ ++ + + + + ++ E Q+EK
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE----QVEKN 134
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.5 bits (64), Expect = 0.74
Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 51 ELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS 110
+L S + E+ + +++ + + + K + ++
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---- 1019
Query: 111 VLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
+ EQ +L L+ + ++L ++
Sbjct: 1020 --ETEQLVSELKEQNTLLKTEKEELNRR 1045
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 26.9 bits (59), Expect = 2.6
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 84 SNSIEEQNQRYKQLIPQLEQIDQIYDSVLKL 114
SN+++E + +++ I Q+ +
Sbjct: 1 SNAMKELIKEHQKDINPALQLHDWVEYYRPF 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.1
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 95 KQLIPQLEQIDQIY--DS 110
KQ + +L+ ++Y DS
Sbjct: 19 KQALKKLQASLKLYADDS 36
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain,
poly(A) site recognition, RNA, nuclear, RNA BIND
protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Length = 90
Score = 25.2 bits (56), Expect = 3.5
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 51 ELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY 94
+ S + ++++ + + + V SN +E + +
Sbjct: 51 GVGSEASSKKLMDLLPKREL----HGQNPVVTPSNKLEHHHHHH 90
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.3 bits (58), Expect = 4.9
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 41 FKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQ 100
+ L L + + LEK+ + SD+ + + I E + + +
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
L+ + + A K + LE+ L++
Sbjct: 1097 LQAALARLEDETSQKNNALKK---IRELESHISDLQED 1131
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 25.9 bits (57), Expect = 4.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 7 NSLSNKMTSLSTSTSSFEPMISHDPRLNELATNM 40
N L + + T++ F ++ + L EL TN+
Sbjct: 230 NLLITEALAGITASMRFSGFLTVEISLRELLTNL 263
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 26.0 bits (56), Expect = 5.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 97 LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKR 127
EQ++++ + +L L + HY KR
Sbjct: 450 RTKSDEQVEKVIEEILALPENEEMRKHYLKR 480
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase,
transferase; 2.50A {Rabbit hemorrhagic disease virus}
SCOP: e.8.1.4 PDB: 1khw_A
Length = 516
Score = 25.5 bits (55), Expect = 6.9
Identities = 6/75 (8%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 22 SFEP--MISHDPRLNE-----LATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
+ P + DP ++ N+ + + +++ E +E+ +
Sbjct: 47 GYRPANLGRSDPDSDKSLMNIAVKNLQVYQQEPKLDKVD------EFIERAAADVLGYLR 100
Query: 75 DMKQITVNISNSIEE 89
+ + + + +
Sbjct: 101 FLTKGERQANLNFKA 115
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein;
2.30A {Bacillus subtilis subsp}
Length = 350
Score = 25.4 bits (55), Expect = 7.4
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 11 NKMTSLSTSTSSF--EPMISHDPRLNELATNMFKKTADYLIGELNSTQADYE--VLEKMN 66
+ + S + S+ + + + + + K+ ++ L+G L++ + V+ +
Sbjct: 153 GRASVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQ 212
Query: 67 NATITKYSDMKQITVNISNS 86
+ IT I S
Sbjct: 213 GGVMPTTDKGHPITFEIKKS 232
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Length = 508
Score = 25.3 bits (56), Expect = 7.6
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 91 NQRYKQLIPQLE-QIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137
+ ++ L+ + D L+ D +RL+ + +QL K
Sbjct: 450 SASMPGVVDHLKFRKSDNPDIDLEFVVPHDYCDFAGERLDGRLQQLAK 497
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 25.2 bits (56), Expect = 8.8
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 35 ELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITK 72
M + G + A EK+ +T+
Sbjct: 263 AAVMEMMQALRADGHGNDD-HSALACYYEKLAKVEVTR 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.123 0.316
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,840,595
Number of extensions: 97424
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 63
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.4 bits)