RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8909
         (138 letters)



>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 133

 Score = 24.6 bits (53), Expect = 3.8
 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITK 72
           L      M +       G  +   A     EK+    +T+
Sbjct: 95  LTAAVMEMMQALRADGHGNDD-HSALACYYEKLAKVEVTR 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.123    0.316 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,379
Number of extensions: 18233
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 19
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.5 bits)