BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8911
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase
1 Of The Haloacid Dehalogenase Superfamily (Mgc5987)
Length = 187
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 133 LDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 190
LDYTLWP V V PF K V D +G ++ Y VPE+L+ L+ AAASRT
Sbjct: 34 LDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRT 93
Query: 191 SEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDV 250
SEI A Q+L L +L +YF ++EIYPG K THFE L++ TGI + M+FFDDE RN DV
Sbjct: 94 SEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDV 153
Query: 251 SPLGVTCIHVKKGMSHAVLQKGLKQWA 277
S LGVTCIH++ GM+ L +GL+ +A
Sbjct: 154 SKLGVTCIHIQNGMNLQTLSQGLETFA 180
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 79/109 (72%)
Query: 3 VVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIF 62
V D RG ++ YP+VP +LK L+ AAASRTSEI+GA QLL+LF+ +YF H++I+
Sbjct: 59 VRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIY 118
Query: 63 PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGM 111
PG K THF L++ TGI + M+FFDDE RN DVS LGVTCI +++GM
Sbjct: 119 PGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGM 167
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 133 LDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 190
LDYTLWP V V PF K V D +G I+ Y VPE+L L+ VAAASRT
Sbjct: 12 LDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRT 71
Query: 191 SEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDV 250
SEI A Q+L L +L +YF +EIYPG K THFE L TG+ + MVFFDDE RN DV
Sbjct: 72 SEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDV 131
Query: 251 SPLGVTCIHVKKGMSHAVLQKGLKQWA 277
LGVTCIH++ GMS L +GL+ +A
Sbjct: 132 GRLGVTCIHIRDGMSLQTLTQGLETFA 158
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 78/121 (64%)
Query: 3 VVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIF 62
V D RG +I+ YP+VP +L L+ VAAASRTSEIQGA QLL+LF+ +YF ++I+
Sbjct: 37 VRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIY 96
Query: 63 PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMTNAITLYGRSV 122
PG K THF L TG+ + MVFFDDE RN DV LGVTCI + DGM+ G
Sbjct: 97 PGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLET 156
Query: 123 F 123
F
Sbjct: 157 F 157
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 70 FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
+ ++ +A G D VFFDD N + LG+T ILV+D T
Sbjct: 154 YQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTT 196
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 218 PKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 261
P+ ++ + +A G D VFFDD N + LG+T I VK
Sbjct: 149 PEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVK 192
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
+ K YP++P L+ LK +A S E + ++++LD+ N + YFD
Sbjct: 78 VYTKPYPEIPYTLEALKSKGFKLAVVSNKLE-ELSKKILDILNLSGYFD 125
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
+ K YP++P L+ LK +A S E + ++++LD+ N + YFD
Sbjct: 80 VYTKPYPEIPYTLEALKSKGFKLAVVSNKLE-ELSKKILDILNLSGYFD 127
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTS--EIQGAQQLLDLFNWNQYFDHKQ 60
A +YY + ++ Q+NC V A T E++GA L L +YF +KQ
Sbjct: 192 AQGEYY--LTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQ 243
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 223 FESLKKATGIEYKDMVFFDDE 243
F+SL KATGI+ +++V++ DE
Sbjct: 270 FQSLLKATGIDLENIVYYKDE 290
>pdb|2HGC|A Chain A, Solution Nmr Structure Of The Yjcq Protein From Bacillus
Subtilis. Northeast Structural Genomics Target Sr346
Length = 102
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 98 SPLGVTCI-LVEDGMTNAITLYGRSVFIISNHLSKKLDYTLWPLHVHDLVAPFKKIGQKV 156
+PL I + ED +A+ R +II H S H++ L + G+
Sbjct: 19 TPLSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRP------HLYKLGPELTEKGENY 72
Query: 157 MDAKGTLIKYYRGVPEILRYLK 178
+ GT K Y+ + EI ++K
Sbjct: 73 LKENGTWSKAYKTIKEIKDWIK 94
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 223 FESLKKATGIEYKDMVFFDDE 243
F+SL KATGI+ +++V++ DE
Sbjct: 278 FQSLLKATGIDLENIVYYKDE 298
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 208 YFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKKG 263
Y S + P+ F+++ + GI+ K+ F DD E N LG++ K G
Sbjct: 164 YLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAG 219
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 208 YFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKKG 263
Y S + P+ F+++ + GI+ K+ F DD E N LG++ K G
Sbjct: 164 YLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAG 219
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 175 RYLKE-NKCLVAAASRTSEILHAKQILNLINLNQYFSN-------KEIYPGPKTTHFESL 226
R++K+ N L A ++ + A + LINL ++ + +EI K E +
Sbjct: 455 RWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRDQYREIKQANKVRLAEFV 514
Query: 227 KKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 260
K TGIE FD + + H+ + +H+
Sbjct: 515 KVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHI 548
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 175 RYLKE-NKCLVAAASRTSEILHAKQILNLINLNQYFSN-------KEIYPGPKTTHFESL 226
R++K+ N L A ++ + A + LINL ++ + +EI K E +
Sbjct: 455 RWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFV 514
Query: 227 KKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 260
K TGIE FD + + H+ + +H+
Sbjct: 515 KVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHI 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,750,015
Number of Sequences: 62578
Number of extensions: 357131
Number of successful extensions: 673
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 31
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)