RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8911
(280 letters)
>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase. This family contains
phosphatase enzymes and other proteins of the HAD
superfamily. It includes MDP-1 which is a eukaryotic
magnesium-dependent acid phosphatase.
Length = 164
Score = 192 bits (489), Expect = 1e-61
Identities = 67/155 (43%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 133 LDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 190
LDYTLWP V PFKK V+D +G + Y VP IL+ LKE +A ASRT
Sbjct: 10 LDYTLWPFWCDTHVGPPFKKDKNGTVVDRRGEELSLYPDVPSILQELKEKGITIAVASRT 69
Query: 191 SEILHAKQILNLINLN------QYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEE 244
A+++L L+++N YF EIYPG KTTHF+ + K +G+ Y DM+FFDDE
Sbjct: 70 DAPDWARELLKLLHINDGPPAIDYFDYLEIYPGSKTTHFKKIHKKSGVPYSDMLFFDDES 129
Query: 245 RNSHDVSPLGVTCIHVKKGMSHAVLQKGLKQWASK 279
RN VS LGVT + V G++ ++GL++W +
Sbjct: 130 RNIDVVSRLGVTFVLVPDGLTREEFERGLRKWRKR 164
Score = 171 bits (435), Expect = 1e-53
Identities = 58/118 (49%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWN------Q 54
VVD RG + YPDVP IL+ LK+ +A ASRT A++LL L + N
Sbjct: 33 GTVVDRRGEELSLYPDVPSILQELKEKGITIAVASRTDAPDWARELLKLLHINDGPPAID 92
Query: 55 YFDHKQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
YFD+ +I+PG KTTHF + K +G+ Y DM+FFDDE RN VS LGVT +LV DG+T
Sbjct: 93 YFDYLEIYPGSKTTHFKKIHKKSGVPYSDMLFFDDESRNIDVVSRLGVTFVLVPDGLT 150
>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1. This model
represents two closely related clades of sequences from
eukaryotes and archaea. The mouse enzyme has been
characterized as a phosphatase and has been positively
identified as a member of the haloacid dehalogenase
(HAD) superfamily by site-directed mutagenesis of the
active site residues.
Length = 174
Score = 65.3 bits (159), Expect = 6e-13
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 133 LDYTLWPLH-VHDLVAPFKKIGQK---VMDAKGTLIKYYRGVPEILRYLKENKCLVAAAS 188
LD TLW + + L PFK + Q ++D GT + + V ++L+ LK+ +A AS
Sbjct: 9 LDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATAS 68
Query: 189 RTSEILHAKQILNL---------INLNQYFSNKEIYPGPKTT--HFESLKK--ATG---I 232
A +IL + ++ F ++ P L+K +
Sbjct: 69 WNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVL 128
Query: 233 EYKDMVFFDDEERNSHDVSPLGVTCIHVKKGMSHAVLQKGLKQWAS 278
+ ++FFDD N +V GVT + GM +K L+ W S
Sbjct: 129 KPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTFKKILEMWRS 174
Score = 65.3 bits (159), Expect = 7e-13
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 3 VVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFN---------WN 53
++D G + +V +L+ LK +A AS + A ++L F +
Sbjct: 36 IIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMH 95
Query: 54 QYFDHKQIFP-GQKTTHFANL------KKATGIEYKDMVFFDDEERNSHDVSPLGVTCIL 106
FD + K + + ++ ++FFDD N +V GVT
Sbjct: 96 SLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155
Query: 107 VEDGMT 112
GM
Sbjct: 156 CPSGMD 161
>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily
IIIC. This model represents the IIIC subfamily of the
Haloacid Dehalogenase (HAD) superfamily of aspartate
nucleophile hydrolases. Subfamily III (also including
IIIA - TIGR01662 and IIIB - pfam03767) contains
sequences which do not contain either of the insert
domains (between the 1st and 2nd conserved catalytic
motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549,
TIGR01488, TIGR01494, TIGR01658, TIGR01544 and
TIGR01545, or between the 2nd and 3rd, subfamily II -
TIGR01460 and TIGR01484). Subfamily IIIC contains five
relatively distantly related clades: a family of viral
proteins (TIGR01684), a family of eukaryotic proteins
called MDP-1 and a family of archaeal proteins most
closely related to MDP-1 (TIGR01685), a family of
bacteria including the Streptomyces FkbH protein
(TIGR01686), and a small clade including the Pasteurella
BcbF and EcbF proteins. The overall lack of species
overlap among these clades may indicate a conserved
function, but the degree of divergence between the
clades and the differences in archetecture outside of
the domain in some clades warns against such a
conclusion. No member of this subfamily is characterized
with respect to function, however the MDP-1 protein is a
characterized phosphatase. All of the characterized
enzymes within subfamily III are phosphatases, and all
of the active site residues characteristic of
HAD-superfamily phosphatases are present in subfamily
IIIC.
Length = 128
Score = 44.7 bits (106), Expect = 5e-06
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 133 LDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTS- 191
LD TLW +G+ + IK + + L+ LK+N L+A AS
Sbjct: 7 LDNTLWTGE-------NIVVGEDPIIDLEVTIKE---IRDKLQTLKKNGFLLALASYNDD 56
Query: 192 -----EILHAKQILNLIN-LNQYFSN-KEIYPGPKT-THFESLKKATG-IEYKDMVFFDD 242
E+L + +I L +YF Y PK+ E K G ++ K ++F DD
Sbjct: 57 PHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDD 116
Query: 243 EERNSHDVS 251
N+ +V
Sbjct: 117 RPDNNEEVD 125
Score = 40.5 bits (95), Expect = 1e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLF------NW-NQYFDHKQIFP-GQ 65
++ L+ LK+N L+A AS + A +LL +F +YFD I
Sbjct: 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLP 90
Query: 66 KTTHFAN--LKKATGIEYKDMVFFDDEERNSHDVS 98
K+ LK ++ K ++F DD N+ +V
Sbjct: 91 KSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVD 125
>gnl|CDD|227329 COG4996, COG4996, Predicted phosphatase [General function
prediction only].
Length = 164
Score = 37.5 bits (87), Expect = 0.002
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 2 KVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQI 61
+ D++G + +PDV LK+ + + ++ AS E A + L + QYF + I
Sbjct: 31 TIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE-DKAIKALRALDLLQYFHYIVI 89
Query: 62 FPG-------QKTTHFANLKKATGIEYKDMVFFDDEE 91
P + N ++ I+ ++V+ DD
Sbjct: 90 EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRR 126
>gnl|CDD|233675 TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleotidase. This
family of proteins includes the SDT1/SSM1 gene from
yeast which has been shown to code for a pyrimidine
(UMP/CMP) 5'nucleotidase. The family spans plants, fungi
and a small number of bacteria. These enzymes are
members of the haloacid dehalogenase (HAD) superfamily
of hydrolases, specifically the IA subfamily (variant 3,
TIGR01509).
Length = 183
Score = 31.6 bits (72), Expect = 0.26
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 172 EILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF--------SNKEIYPGPKTTHF 223
+L L K + R HA++ L + + F +N ++ P P +
Sbjct: 91 NLLLRLPGRKIIFTNGDRA----HARRALRRLGIEDCFDGIFCFDTANPDLLPKPSPQAY 146
Query: 224 ESLKKATGIEYKDMVFFDDEERNSHDVSPLGV-TCIH 259
E + G++ + +FFDD RN LG+ T +
Sbjct: 147 EKALREAGVDPERAIFFDDSARNIAAGKALGMKTVLV 183
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 31.5 bits (72), Expect = 0.26
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSN-------KEIYPGPKTT 221
V E+LR LK + S +++L + L F P P+
Sbjct: 81 DVVELLRRLKAKGVKLVILS-NGSREAVERLLEKLGLLDLFDAVFTSDDVGARKPDPEA- 138
Query: 222 HFESLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTCIHV 260
+E + + G+ ++++F DD + D+ G+ +HV
Sbjct: 139 -YERVLERLGLPPEEILFIDD---SPEDLEAARAAGIKTVHV 176
Score = 30.4 bits (69), Expect = 0.60
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIFPGQKTTH---- 69
+PDV +L+ LK + S + ++LL+ FD +F
Sbjct: 79 FPDVVELLRRLKAKGVKLVILS-NGSREAVERLLEKLGLLDLFD--AVFTSDDVGARKPD 135
Query: 70 ---FANLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTCILV 107
+ + + G+ ++++F DD + D+ G+ + V
Sbjct: 136 PEAYERVLERLGLPPEEILFIDD---SPEDLEAARAAGIKTVHV 176
>gnl|CDD|226825 COG4390, COG4390, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 106
Score = 29.9 bits (67), Expect = 0.47
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 3 VVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLF 50
V D G + + P V G L LK N L A + + A+Q L F
Sbjct: 21 VQDGDGKTVHHIPAVQGKLGSLKVYNALAEAFDGKLDKEAAEQGLIWF 68
>gnl|CDD|233443 TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily,
subfamily IA, variant 3 with third motif having DD or
ED. This model represents part of one structural
subfamily of the Haloacid Dehalogenase (HAD) superfamily
of aspartate-nucleophile hydrolases. The superfamily is
defined by the presence of three short catalytic motifs.
The subfamilies are defined based on the location and
the observed or predicted fold of a so-called "capping
domain", or the absence of such a domain. Subfamily I
consists of sequences in which the capping domain is
found in between the first and second catalytic motifs.
Subfamily II consists of sequences in which the capping
domain is found between the second and third motifs.
Subfamily III sequences have no capping domain in either
of these positions.The Subfamily IA and IB capping
domains are predicted by PSI-PRED to consist of an alpha
helical bundle. Subfamily I encompasses such a wide
region of sequence space (the sequences are highly
divergent) that representing it with a single model is
impossible, resulting in an overly broad description
which allows in many unrelated sequences. Subfamily IA
and IB are separated based on an aparrent phylogenetic
bifurcation. Subfamily IA is still too broad to model,
but cannot be further subdivided into large chunks based
on phylogenetic trees. Of the three motifs defining the
HAD superfamily, the third has three variant forms : (1)
hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s
where _s_ refers to a small amino acid and _h_ to a
hydrophobic one. All three of these variants are found
in subfamily IA. Individual models were made based on
seeds exhibiting only one of the variants each. Variant
3 (this model) is found in the enzymes
beta-phosphoglucomutase (TIGR01990) and
deoxyglucose-6-phosphatase, while many other enzymes of
subfamily IA exhibit this variant as well as variant 1
(TIGR01549). These three variant models were created
withthe knowledge that there will be overlap among them
- this is by design and serves the purpose of
eliminating the overlap with models of more distantly
relatedHAD subfamilies caused by an overly broad single
model [Unknown function, Enzymes of unknown
specificity].
Length = 177
Score = 30.5 bits (69), Expect = 0.68
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 11 IKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQ-QLLDLFNWNQYFDHKQIFPGQKTTH 69
+K P V +L+ L+ +A + + L L FD I
Sbjct: 78 LKPLPGVRALLEALRARGKKLALLTNSPRADAKLVLELGLR---ALFDVV-IDSSDVGLG 133
Query: 70 ------FANLKKATGIEYKDMVFFDDEERN 93
+ K G++ + +F DD
Sbjct: 134 KPDPDIYLQALKKLGLKPSECLFVDDSPAG 163
>gnl|CDD|223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General
function prediction only].
Length = 229
Score = 30.3 bits (68), Expect = 0.84
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 134 DYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVA----AASR 189
L L L ++ ++++ A L+ Y E L+ L + L A
Sbjct: 68 LERLLELLERLLGDEDAELVEELLAALAKLLPDYPEALEALKELGKKYKLGILTNGARPH 127
Query: 190 TSEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERN 246
L +L+ + + S P FE + G+ ++ +F D N
Sbjct: 128 QERKLRQLGLLDYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLEN 183
>gnl|CDD|181872 PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.
Length = 199
Score = 30.0 bits (68), Expect = 0.93
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 76 ATGIEYKDMVFFDDEERNSHDVSPLGVTCILVED 109
A G D VFFDD N + LG+T ILV D
Sbjct: 153 AEGFSAADAVFFDDNADNIEAANALGITSILVTD 186
Score = 30.0 bits (68), Expect = 0.99
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 229 ATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 260
A G D VFFDD N + LG+T I V
Sbjct: 153 AEGFSAADAVFFDDNADNIEAANALGITSILV 184
>gnl|CDD|136007 PRK06698, PRK06698, bifunctional
5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase/phosphatase; Validated.
Length = 459
Score = 29.2 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 14 YPDVPGILKYLKQNNCLVAAASR--TSEIQGAQQLLDLFNW-NQYFDHKQI 61
YP+V I Y+K+NNC + AS T ++ DL W + F +QI
Sbjct: 332 YPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQI 382
Score = 28.8 bits (64), Expect = 3.9
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 149 FKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASR-TSEILHAKQILNLINLNQ 207
+++ + + KG L Y V EI Y+KEN C + AS +E L A I++ +L+Q
Sbjct: 317 LERLIENIKSGKGAL---YPNVKEIFTYIKENNCSIYIASNGLTEYLRA--IVSYYDLDQ 371
Query: 208 YFS 210
+ +
Sbjct: 372 WVT 374
>gnl|CDD|185197 PRK15297, PRK15297, putative fimbrial protein StiH; Provisional.
Length = 359
Score = 28.9 bits (64), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 79 IEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMTNAITLYGRS 121
IE KD+ D +NSH + + TC V DG +++L G +
Sbjct: 240 IEGKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSMSLNGAT 282
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many
also possess a small cap domain, the fold and function
of which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 28.1 bits (63), Expect = 3.3
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ A ++ YP V LK LK+ +A A+ S + +LL+ + YFD
Sbjct: 13 SEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKS-RREVLELLEELGLDDYFDP 69
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. This model describes a polypeptide
chain of DNA polymerase III. Full-length homologs of
this protein are restricted to the Gram-positive
lineages, including the Mycoplasmas. This protein is
designated alpha chain and given the gene symbol polC,
but is not a full-length homolog of other polC genes.
The N-terminal region of about 200 amino acids is rich
in low-complexity sequence, poorly alignable, and not
included n this model [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1213
Score = 28.5 bits (64), Expect = 4.4
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 59 KQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLG-VTCILVEDGMTNAITL 117
+ + P K+ N+ K G++ DD R +D V ++VE IT
Sbjct: 309 RALNPEYKSHRLGNICKKLGVDL------DDHHRADYDAEATAKVFKVMVEQLKEKGITN 362
Query: 118 YGRSVFIISNHLSKKLDYT-LWPLHVHDLV---APFKKIGQKVMDAKGTLIKYYRGVPEI 173
++N LS + Y L P H+ A K + + V + L KY+ P I
Sbjct: 363 LEE----LNNKLSSEELYKRLRPNHIIIYAKNQAGLKNLYKLVSIS---LTKYFYTRPRI 415
Query: 174 LR-YLKENK--CLVAAASRTSEILHA 196
LR LK+ + L+ +A E+ A
Sbjct: 416 LRSLLKKYREGLLIGSACSEGELFDA 441
>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General
function prediction only].
Length = 221
Score = 28.2 bits (63), Expect = 4.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF 209
GV E+L LK +A AS +S A+++L + L YF
Sbjct: 90 GVVELLEQLKARGIPLAVAS-SSPRRAAERVLARLGLLDYF 129
>gnl|CDD|240135 cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain
of bacterial LigD proteins similar to Pseudomonas
aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain
belongs to the archaeal/eukaryal primase (AEP)
superfamily. In prokaryotes, LigD along with Ku is
required for non-homologous end joining (NHEJ)-mediated
repair of DNA double-strand breaks (DSB). NHEJ-mediated
DNA DSB repair is error-prone. It has been suggested
that LigD Pol contributes to NHEJ-mediated DNA DSB
repair in vivo, by filling in short 5'-overhangs with
ribonucleotides; the filled in termini would then be
sealed by the associated LigD ligase domain, resulting
in short stretches of RNA incorporated into the genomic
DNA. The Pol domains of PaeLigD and Mycobacterium
tuberculosis (Mt)LigD are stimulated by manganese, are
error-prone, and prefer adding rNTPs to dNTPs in vitro;
however PaeLigD and MtLigD belong to other subgroups,
proteins in this subgroup await functional
characterization.
Length = 228
Score = 28.0 bits (63), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 160 KGTLIKYYRGV-PEILRYLKE 179
K LI+YYR V P +L YL++
Sbjct: 1 KRDLIRYYRAVAPYLLPYLRD 21
>gnl|CDD|220488 pfam09950, DUF2184, Uncharacterized protein conserved in bacteria
(DUF2184). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 247
Score = 28.0 bits (63), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 20 ILKYLKQNNCLVAAASRTSEIQGAQQL 46
IL++L++NN A R I+G ++L
Sbjct: 155 ILEFLQENNIYTAQTGRPLTIRGVKEL 181
>gnl|CDD|222551 pfam14113, DUF4285, Domain of unknown function (DUF4285). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 157 and
206 amino acids in length.
Length = 117
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 150 KKIGQKVMDAKGTLIKYYRGVPEILRYLKENK 181
IG+ V G KY V E+ +LK
Sbjct: 25 FSIGRIVGGGDGK--KYIIRVKELADWLKLKP 54
>gnl|CDD|118668 pfam10140, YukC, WXG100 protein secretion system (Wss), protein
YukC. Members of this family of proteins include
predicted membrane proteins homologous to YukC in B.
subtilis. The YukC protein family would participate to
the formation of a translocon required for the secretion
of WXG100 proteins (pfam06013) in monoderm bacteria, the
WXG100 protein secretion system (Wss). This family
includes EssB in Staphylococcus aureus.
Length = 359
Score = 27.6 bits (62), Expect = 7.7
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 118 YGRSVFIISNHLSKKLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEIL--- 174
+V + HL+K+L + L P ++ V D T +RGV E L
Sbjct: 64 LALNVAALEEHLNKRLTFILHPENL-------------VFDKGLTPKFIHRGVKESLPPY 110
Query: 175 -----RYLKENKCLVAAA 187
R+LKE K + A
Sbjct: 111 ELDEERFLKEYKAFIIAL 128
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 27.5 bits (62), Expect = 7.9
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 128 HLSKKLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGV---PEILRYLKENKCL 183
K+L + + DLV K K D + IK + + E+L LK K L
Sbjct: 136 EFKKEL--KEFGITFEDLV----KESPKHRDTRENAIKIAKTIAENEELLEKLKRKKKL 188
>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional.
Length = 385
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 145 LVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKE 179
L A F++ G+ +G +KY R LR L+E
Sbjct: 26 LTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEE 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,328,963
Number of extensions: 1355516
Number of successful extensions: 1116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 42
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)