RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8911
(280 letters)
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 149 bits (378), Expect = 4e-45
Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 133 LDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 190
LDYTLWP V V PF K V D +G ++ Y VPE+L+ L+ AAASRT
Sbjct: 34 LDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRT 93
Query: 191 SEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDV 250
SEI A Q+L L +L +YF ++EIYPG K THFE L++ TGI + M+FFDDE RN DV
Sbjct: 94 SEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDV 153
Query: 251 SPLGVTCIHVKKGMSHAVLQKGLKQWASK 279
S LGVTCIH++ GM+ L +GL+ +A
Sbjct: 154 SKLGVTCIHIQNGMNLQTLSQGLETFAKA 182
Score = 128 bits (322), Expect = 1e-36
Identities = 60/111 (54%), Positives = 79/111 (71%)
Query: 2 KVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQI 61
V D RG ++ YP+VP +LK L+ AAASRTSEI+GA QLL+LF+ +YF H++I
Sbjct: 58 TVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREI 117
Query: 62 FPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
+PG K THF L++ TGI + M+FFDDE RN DVS LGVTCI +++GM
Sbjct: 118 YPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMN 168
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural
genomics, PSI-2, protei structure initiative; 1.71A
{Bacteroides fragilis} PDB: 3slr_A
Length = 387
Score = 49.1 bits (116), Expect = 7e-07
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 10/135 (7%)
Query: 133 LDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSE 192
LD T+W V D ++G + K + E ++ LK ++A S+ +E
Sbjct: 229 LDNTIWGGVVGDDGWENIQVGHGLGIGK-----AFTEFQEWVKKLKNRGIIIAVCSKNNE 283
Query: 193 ---ILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDE--ERNS 247
++ ++ + K + ++++ I + MVF DD ERN
Sbjct: 284 GKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVFLDDNPFERNM 343
Query: 248 HDVSPLGVTCIHVKK 262
GVT + +
Sbjct: 344 VREHVPGVTVPELPE 358
Score = 42.2 bits (98), Expect = 9e-05
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 12 KYYPDVPGILKYLKQNNCLVAAASRTSE---IQGAQQLLDLFNWNQYFDHKQIFPGQKTT 68
K + + +K LK ++A S+ +E + ++ ++ K
Sbjct: 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKAD 315
Query: 69 HFANLKKATGIEYKDMVFFDDE--ERNSHDVSPLGVTCILVED 109
+ +++ I + MVF DD ERN GVT + +
Sbjct: 316 NIRTIQRTLNIGFDSMVFLDDNPFERNMVREHVPGVTVPELPE 358
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 6e-05
Identities = 45/262 (17%), Positives = 72/262 (27%), Gaps = 101/262 (38%)
Query: 43 AQQLLDLFNWNQYFDHKQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP--- 99
A QL + FN +I P + T FA DDE +P
Sbjct: 30 ASQLQEQFN--------KILP-EPTEGFAA---------------DDE-----PTTPAEL 60
Query: 100 ----LGVTCILVEDGMTNAITLYGRSVFIISNHLSKKLDYTLWPLH---VHDLVAPFKKI 152
LG LVE + + + + + Y L +H L A +
Sbjct: 61 VGKFLGYVSSLVEPS---KVGQFDQVLNLCLTEFEN--CY----LEGNDIHALAAKLLQE 111
Query: 153 GQKVMDAKGTLIK-YYRGVPEILRYLKENK--CLVAAASRTSEILHAKQILNLI-----N 204
+ LIK Y R + L A + L A I N
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA------IFGGQGN 165
Query: 205 LNQYFSN-KEIYPGPKTTHFESLKKATGIEYKDMV--FFD-------DEERNSHDVSPLG 254
+ YF +++Y +T Y +V + R + D
Sbjct: 166 TDDYFEELRDLY---QT-------------YHVLVGDLIKFSAETLSELIRTTLDAEK-- 207
Query: 255 VTCIHVKKGMSHAVLQKGLKQW 276
+G++ + +W
Sbjct: 208 ----VFTQGLN-------ILEW 218
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 36.9 bits (86), Expect = 0.003
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 25/140 (17%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIFPGQKTTH 69
+ +L LK+NN +A S + + + + N YFD I
Sbjct: 101 NFMLNDGAIELLDTLKENNITMAIVSNKNG-ERLRSEIHHKNLTHYFDS--IIGSG---D 154
Query: 70 FANLK----------KATGIEYKDMVFF--DDEERNSHDVSP---LGVTCILVEDGMTNA 114
+K IE VFF D + D+ G I
Sbjct: 155 TGTIKPSPEPVLAALTNINIEPSKEVFFIGD----SISDIQSAIEAGCLPIKYGSTNIIK 210
Query: 115 ITLYGRSVFIISNHLSKKLD 134
L ++ + I N + + ++
Sbjct: 211 DILSFKNFYDIRNFICQLIN 230
Score = 33.0 bits (76), Expect = 0.071
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 164 IKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E+L LKEN +A S + + ++ NL YF
Sbjct: 102 FMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFD 147
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/108 (12%), Positives = 25/108 (23%), Gaps = 10/108 (9%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIFPGQKTT 68
+ +L K+N S + N D + +
Sbjct: 15 GTDEDQRRWRNLLAAAKKNGVGTVILSNDPG-GLGAAPIRELETNGVVDK--VLLSGELG 71
Query: 69 H-------FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVED 109
F A + +D V DD N G+ + +
Sbjct: 72 VEKPEEAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQ 119
Score = 33.6 bits (77), Expect = 0.027
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF-----SNKEIYPGPKTT 221
R +L K+N S + + N S + P+
Sbjct: 20 QRRWRNLLAAAKKNGVGTVILSNDPG-GLGAAPIRELETNGVVDKVLLSGELGVEKPEEA 78
Query: 222 HFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 261
F++ A + +D V DD N G+ ++ +
Sbjct: 79 AFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQ 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 34/276 (12%), Positives = 75/276 (27%), Gaps = 88/276 (31%)
Query: 25 KQNNCLVAAASRTSEIQGA--------------------QQLLDLF-----NWNQYFDHK 59
K + + ++Q + L L NW DH
Sbjct: 163 KT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 60 QIFPGQKTTHFANLKKATGI---EYKDMVFFDDEERNSHDVSPLGVTC-ILV---EDGMT 112
H + + Y++ + +N+ + ++C IL+ +T
Sbjct: 221 SNIK--LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 113 NAITLYGRSVFIISNH------------LSKKLDYTLWPLHVHDL------VAPF--KKI 152
+ ++ + + +H L K LD DL P I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----CRPQDLPREVLTTNPRRLSII 333
Query: 153 GQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAK-QILNLINLNQYFSN 211
+ + D T + +++ +K + I+ + +L + F
Sbjct: 334 AESIRDGLAT-WDNW-------KHVNCDK--------LTTIIESSLNVLEPAEYRKMFDR 377
Query: 212 KEIYPGPKTTHFESLK---KATGIEYKDMVFFDDEE 244
++P S + + D++ D
Sbjct: 378 LSVFP-------PSAHIPTILLSLIWFDVIKSDVMV 406
Score = 34.8 bits (79), Expect = 0.029
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 52/179 (29%)
Query: 44 QQLLDLFNWNQYFDHKQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 103
+ ++D +N + FD + P Y D F+ SH
Sbjct: 447 RSIVDHYNIPKTFDSDDLIP----------------PYLDQYFY------SH-------- 476
Query: 104 CI---LVEDGMTNAITLYGRSVFIISNHLSKKL--DYTLW--PLHVHDLVAPFKKIGQKV 156
I L +TL+ R VF+ L +K+ D T W + + + K +
Sbjct: 477 -IGHHLKNIEHPERMTLF-RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 157 MDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIY 215
D Y R V IL +L + E L + +L+ + ++ I+
Sbjct: 535 CDNDPK---YERLVNAILDFLP----------KIEENLICSKYTDLLRIALMAEDEAIF 580
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 37.1 bits (85), Expect = 0.005
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 1/74 (1%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQIFPGQKTT 68
++ +V +L LK + A+ + YF+ I
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPY-TETVVPFENLGLLPYFEADFIATASDVL 270
Query: 69 HFANLKKATGIEYK 82
N+ K
Sbjct: 271 EAENMYPQARPLGK 284
Score = 32.8 bits (74), Expect = 0.11
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 162 TLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGPKTT 221
+++ V +L LK + A+ + L YF I
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYT-ETVVPFENLGLLPYFEADFIATASDVL 270
Query: 222 HFESLKKATGIEYK 235
E++ K
Sbjct: 271 EAENMYPQARPLGK 284
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 36.1 bits (84), Expect = 0.008
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
Y ++ IL+ L +N ++ A+ A+ +L F+ ++YF
Sbjct: 112 YENMKEILEMLYKNGKILLVATSKPT-VFAETILRYFDIDRYFK 154
Score = 35.3 bits (82), Expect = 0.012
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF-----SNKEIYPGPKTT 221
Y + EIL L +N ++ A+ + A+ IL ++++YF SN + K
Sbjct: 112 YENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYFKYIAGSNLDGTRVNKNE 170
Query: 222 HFESLKKATGIEYKD---MV 238
+ + ++ KD MV
Sbjct: 171 VIQYVLDLCNVKDKDKVIMV 190
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 35.2 bits (82), Expect = 0.010
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
A + P +L + ++ T + A +L YF
Sbjct: 82 AQVVLMPGAREVLAWADESGIQQFIY--THKGNNAFTILKDLGVESYFT 128
Score = 32.5 bits (75), Expect = 0.083
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E+L + E+ + +A IL + + YF+
Sbjct: 87 MPGAREVLAWADESGIQQFIYTHKGN--NAFTILKDLGVESYFT 128
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 35.5 bits (82), Expect = 0.011
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 6 ARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
R Y D L+ LK N +A S S + LL+ F+ +YFD
Sbjct: 89 IRDGEAFLYDDTLEFLEGLKSNGYKLALVSNASPRV--KTLLEKFDLKKYFDA 139
Score = 27.8 bits (62), Expect = 3.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF 209
Y E L LK N +A S S K +L +L +YF
Sbjct: 97 YDDTLEFLEGLKSNGYKLALVSNASP--RVKTLLEKFDLKKYF 137
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 35.6 bits (83), Expect = 0.011
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
Y + +L LK + A+ ++Q+L+ F YFD
Sbjct: 88 YDGIEALLSSLKDYGFHLVVATSKPT-VFSKQILEHFKLAFYFD 130
Score = 34.1 bits (79), Expect = 0.029
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF-----SNKEIYPGPKTT 221
Y G+ +L LK+ + A+ + +KQIL L YF S+ + K
Sbjct: 88 YDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYFDAIVGSSLDGKLSTKED 146
Query: 222 HFESLKKATGIEYKDMVFFDDEERNSHDV 250
++ I+ D + D +DV
Sbjct: 147 VIRYAMESLNIKSDDAIMIGD---REYDV 172
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 35.3 bits (82), Expect = 0.011
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
GV E L ++K + +A A+ ++ A + L ++L +YF
Sbjct: 88 GVREALEFVKSKRIKLALAT-STPQREALERLRRLDLEKYFD 128
Score = 33.7 bits (78), Expect = 0.038
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+K P V L+++K +A A+ ++ + A + L + +YFD
Sbjct: 82 LLKENPGVREALEFVKSKRIKLALAT-STPQREALERLRRLDLEKYFDV 129
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 35.3 bits (82), Expect = 0.014
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
V ++L +K + AS +S + L L +F
Sbjct: 93 DVLKVLNEVKSQGLEIGLAS-SSVKADIFRALEENRLQGFFD 133
Score = 34.1 bits (79), Expect = 0.027
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 15 PDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
PDV +L +K + AS +S + L+ +FD
Sbjct: 92 PDVLKVLNEVKSQGLEIGLAS-SSVKADIFRALEENRLQGFFDI 134
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 34.9 bits (81), Expect = 0.017
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 116 TLYGRSVFIISNHLSKKLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILR 175
L G S + D + +L K M + Y G+ ++L+
Sbjct: 43 QLKGVSREDSLQKILDLADKKVSAEEFKELAK-RKNDNYVKMIQDVSPADVYPGILQLLK 101
Query: 176 YLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
L+ NK +A AS + + +L +NL YF
Sbjct: 102 DLRSNKIKIALASASK---NGPFLLERMNLTGYFD 133
Score = 33.0 bits (76), Expect = 0.070
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 6 ARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ YP + +LK L+ N +A AS + LL+ N YFD
Sbjct: 85 QDVSPADVYPGILQLLKDLRSNKIKIALASASKN---GPFLLERMNLTGYFDA 134
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 34.2 bits (79), Expect = 0.026
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G+ +L L+ + V AS + +A IL + L ++F+
Sbjct: 99 GIRSLLADLRAQQISVGLASVSL---NAPTILAALELREFFT 137
Score = 31.1 bits (71), Expect = 0.28
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
P + +L L+ V AS + A +L ++F
Sbjct: 97 LPGIRSLLADLRAQQISVGLASVSLN---APTILAALELREFFTF 138
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 34.2 bits (79), Expect = 0.029
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 159 AKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
+K T G+ +L LK + AS + +A +IL + + F
Sbjct: 86 SKLTPEDLLPGIGRLLCQLKNENIKIGLASSSR---NAPKILRRLAIIDDFH 134
Score = 33.0 bits (76), Expect = 0.061
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 6 ARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
++ P + +L LK N + AS + A ++L F
Sbjct: 86 SKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRN---APKILRRLAIIDDFHA 135
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 33.8 bits (78), Expect = 0.043
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 26/139 (18%)
Query: 83 DMVFFD------DEERNSHDV-----SPLGVTCILVEDGMTNAITLYGRSVFIISNHLSK 131
D++ FD D E + V + G I VE+ G + I +
Sbjct: 5 DLIIFDCDGVLVDSEIIAAQVESRLLTEAGYP-ISVEEMGE---RFAGMTWKNILLQVES 60
Query: 132 KLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTS 191
+ L L+ +K+ ++ +I GV L L +C+ + +S
Sbjct: 61 EASIPLSA----SLLDKSEKLLDMRLERDVKIID---GVKFALSRLTTPRCICSNSSSH- 112
Query: 192 EILHAKQILNLINLNQYFS 210
+L + L YF+
Sbjct: 113 ---RLDMMLTKVGLKPYFA 128
Score = 27.6 bits (62), Expect = 4.5
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHK 59
+ +K V L L C+ + +S +L YF
Sbjct: 76 KLLDMRLERDVKIIDGVKFALSRLTTPRCICSNSSSHR----LDMMLTKVGLKPYFAPH 130
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 33.4 bits (77), Expect = 0.046
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
GV E + KE LV AS S + +++L + +L F
Sbjct: 98 GVREAVALCKEQGLLVGLAS-ASPLHMLEKVLTMFDLRDSFD 138
Score = 33.0 bits (76), Expect = 0.067
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ + P V + K+ LV AS S + +++L +F+ FD
Sbjct: 83 ARAISLVEETRPLLPGVREAVALCKEQGLLVGLAS-ASPLHMLEKVLTMFDLRDSFDA 139
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 32.9 bits (76), Expect = 0.055
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
H + V +L+ + + ++L+ + YF
Sbjct: 80 HPILFEGVSDLLEDISNQGGRHFLV--SHRNDQVLEILEKTSIAAYFT 125
Score = 28.3 bits (64), Expect = 2.3
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 163 LIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
+ GV ++L + + +IL ++ YF+
Sbjct: 80 HPILFEGVSDLLEDISNQGGRHFLV--SHRNDQVLEILEKTSIAAYFT 125
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 33.3 bits (77), Expect = 0.059
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
+ +PD L +LK+ + S L + +FD
Sbjct: 87 NTILFPDTLPTLTHLKKQGIRIGIISTKYR-FRILSFLRNHMPDDWFD 133
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
+ L +LK+ + S L + +F
Sbjct: 91 FPDTLPTLTHLKKQGIRIGIISTKYRFR-ILSFLRNHMPDDWFD 133
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 33.1 bits (76), Expect = 0.061
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 27/112 (24%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH-------------KQ 60
P+V I+ L++ V S T+ + + DH +
Sbjct: 93 RPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEAR 152
Query: 61 IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTCILVED 109
I + ++ +A G D VFFDD N + LG+T ILV+D
Sbjct: 153 I--------YQHVLQAEGFSPSDTVFFDDNADN---IEGANQLGITSILVKD 193
Score = 31.5 bits (72), Expect = 0.21
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 27/115 (23%)
Query: 163 LIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS------------ 210
+ V I+ L+E V S T+ + +
Sbjct: 89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRK 148
Query: 211 -NKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTCIHVK 261
IY + + +A G D VFFDD N + LG+T I VK
Sbjct: 149 PEARIY--------QHVLQAEGFSPSDTVFFDDNADN---IEGANQLGITSILVK 192
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 33.0 bits (76), Expect = 0.066
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQI 61
+ P +++ L + +R + + A L+ F +
Sbjct: 68 GSRPAPGAVELVRELAGRGYRLGILTRNAR-ELAHVTLEAIGLADCFAEADV 118
Score = 27.6 bits (62), Expect = 3.8
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E++R L + +R + L A L I L F+
Sbjct: 72 APGAVELVRELAGRGYRLGILTRNAREL-AHVTLEAIGLADCFA 114
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 32.8 bits (75), Expect = 0.082
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 14 YPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
L+ + +A S + +L ++FD
Sbjct: 108 LDGAEDTLRECRTRGLRLAVISNFDRRL--EGILGGLGLREHFDF 150
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 32.8 bits (75), Expect = 0.096
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 5 DARGAHIKYYPDVPGILKYLKQNNCLVAAAS-RTSEIQGAQQLLDLFNWNQYFDH 58
+ + A+++ P +L LK+ + + Q + + + +F+H
Sbjct: 87 NTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVKQ--WEKILRLELDDFFEH 139
Score = 28.2 bits (63), Expect = 3.1
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 127 NHLSKKLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAA 186
++L ++LD P + V + + K ++ G ++L LKE +
Sbjct: 63 DYLLRRLDLPYNPKWISAGVIAY-------HNTKFAYLREVPGARKVLIRLKELGYELGI 115
Query: 187 AS-RTSEILHAKQILNLINLNQYF 209
+ K + + L+ +F
Sbjct: 116 ITDGNPVKQWEK--ILRLELDDFF 137
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 32.5 bits (74), Expect = 0.10
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 6 ARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQ--LLDLFNWNQYFDH 58
L+++K+ A G+ LL+ F ++ D
Sbjct: 93 LNVDESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDK 147
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 32.1 bits (74), Expect = 0.12
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD 57
+ +P + +L+ L + + + AQ + + +FD
Sbjct: 82 EAQLFPQIIDLLEELSSS-YPLYITTTKDT-STAQDMAKNLEIHHFFD 127
Score = 27.5 bits (62), Expect = 3.9
Identities = 5/44 (11%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 167 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
+ + ++L L + L ++ + A+ + + ++ +F
Sbjct: 86 FPQIIDLLEELSSSYPLYITTTKDTS--TAQDMAKNLEIHHFFD 127
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 31.7 bits (72), Expect = 0.15
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAAS----RTSEIQGAQQLLDLFNWNQYFDH 58
+ + L+ +KQ A S +E+ +++L F YFD
Sbjct: 31 PEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVI--KRVLTNFGIIDYFDF 82
Score = 29.4 bits (66), Expect = 0.82
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 149 FKKIGQKVMDAKGTLIKYYR-----------GVPEILRYLKENKCLVAAAS----RTSEI 193
+G+ + T ++ E L +K+ A S +E+
Sbjct: 7 IWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV 66
Query: 194 LHAKQILNLINLNQYF 209
+ L + YF
Sbjct: 67 IKRV--LTNFGIIDYF 80
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 31.7 bits (72), Expect = 0.22
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 DARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
R H+ DV +L L++ L+ + + Q ++ ++ YFD
Sbjct: 114 STRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQ--REKIEACACQSYFDA 165
Score = 26.7 bits (59), Expect = 9.1
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 150 KKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF 209
++ + + V +L L++ L+ + + K + YF
Sbjct: 106 EECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQREK--IEACACQSYF 163
Query: 210 SNKEI-----YPGPKTTHFESLKKATGIEYKDMVF 239
I P + F G++ D V
Sbjct: 164 DAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVM 198
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 31.2 bits (71), Expect = 0.26
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 5 DARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ + YP+V +LK LK + +E LD FD
Sbjct: 93 RMSQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEQA--MAFLDALGIKDLFDS 144
Score = 28.1 bits (63), Expect = 2.6
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 157 MDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF 209
+ + Y V E+L+ LK + +E A L+ + + F
Sbjct: 92 LRMSQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAF--LDALGIKDLF 142
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 30.8 bits (70), Expect = 0.29
Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 29/125 (23%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFD--- 57
+ + P+V + + L Q + + + + + F ++
Sbjct: 75 EDFRAVMEEQSQPRPEVLALARDLGQ-RYRMYSLNNEGR-DLNEYRIRTFGLGEFLLAFF 132
Query: 58 ----------HKQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTC 104
+ ++ L A + ++ V DD +N V +G+
Sbjct: 133 TSSALGVMKPNPAMY------RLG-LTLA-QVRPEEAVMVDDRLQN---VQAARAVGMHA 181
Query: 105 ILVED 109
+ D
Sbjct: 182 VQCVD 186
Score = 29.2 bits (66), Expect = 0.95
Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 29/130 (22%)
Query: 148 PFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQ 207
P + + V + R L + + + + + + + L +
Sbjct: 69 PRDFTPEDFRAVMEEQSQPRPEVLALARDLGQ-RYRMYSLNNEGR-DLNEYRIRTFGLGE 126
Query: 208 YFS-------------NKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSP-- 252
+ N +Y + ++ V DD +N V
Sbjct: 127 FLLAFFTSSALGVMKPNPAMY--------RLGLTLAQVRPEEAVMVDDRLQN---VQAAR 175
Query: 253 -LGVTCIHVK 261
+G+ +
Sbjct: 176 AVGMHAVQCV 185
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 31.3 bits (70), Expect = 0.30
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLL-------DLFNW-NQYFDHKQI 61
+++ DV ++ ++ V S S AQ+LL D+ + +FD
Sbjct: 128 KAEFFADVVPAVRKWREAGMKVYIYS--SGSVEAQKLLFGHSTEGDILELVDGHFD---T 182
Query: 62 FPGQK--TTHFANLKKATGIEYKDMVFFDD 89
G K + + + + G +++F D
Sbjct: 183 KIGHKVESESYRKIADSIGCSTNNILFLTD 212
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 30.8 bits (70), Expect = 0.35
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 5 DARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ ++ L+Q L + S Q + L +F
Sbjct: 96 RFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQ--YKRLRDSGLFPFFKD 147
Score = 28.5 bits (64), Expect = 2.4
Identities = 10/89 (11%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 157 MDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYF-----SN 211
+ G +++ L++ L + S + + L L +F S
Sbjct: 95 RRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKR--LRDSGLFPFFKDIFVSE 152
Query: 212 KEIYPGPKTTHFE-SLKKATGIEYKDMVF 239
+ P +F ++ + +
Sbjct: 153 DTGFQKPMKEYFNYVFERIPQFSAEHTLI 181
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 30.8 bits (70), Expect = 0.41
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G +++ +L+++ A A+ + + FS
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFS 157
Score = 30.0 bits (68), Expect = 0.69
Identities = 6/58 (10%), Positives = 17/58 (29%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ P ++ +L+++ A A+ + + + F H
Sbjct: 101 QTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSH 158
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 30.7 bits (70), Expect = 0.42
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ P +L+ +K + + ++ ++L F + +
Sbjct: 106 PEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKEL 155
Score = 28.8 bits (65), Expect = 1.6
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E+L+ +K + + ++ +++ + +
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE 154
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 30.5 bits (68), Expect = 0.59
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 163 LIKYYRGVPEILRYLKENKCLVAAASRTS-EILHAKQILNLINLNQYFSNKEIY------ 215
++K + +L L+++ + T+ HA + L L+ + F
Sbjct: 140 ILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTD 199
Query: 216 ---PGPKTTHFESLKKATGIE-YKDMVFFDDEERN 246
P FE K +G+ Y++ F DD +N
Sbjct: 200 TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKN 234
Score = 27.1 bits (59), Expect = 6.6
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 42 GAQQLLDLFNWNQYFDHKQIFPGQKTTHFANLKKATGIE-YKDMVFFDDEERN 93
G L D + Y + F K +G+ Y++ F DD +N
Sbjct: 182 GIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKN 234
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 30.3 bits (67), Expect = 0.74
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 219 KTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI--HVKKGMSHAVLQKGLKQW 276
KT G ++ M + ++ + + C H M + + LK W
Sbjct: 150 KTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATMELRLYSEPLKDW 209
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 29.6 bits (67), Expect = 0.85
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 6 ARGAHIKYYPDVPGILKYLK-QNNCLVAAASRTSEI-QGAQQLLDLFNWNQYFDH 58
AR I V +L L +++ L+ T + L L + YF
Sbjct: 87 ARREDITLLEGVRELLDALSSRSDVLLGLL--TGNFEASGRHKLKLPGIDHYFPF 139
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 29.3 bits (66), Expect = 1.2
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 5 DARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
P +L+YL L ++ E+Q + + ++YF
Sbjct: 100 AIIPTKSGLMPHAKEVLEYLAPQYNLYILSNGFRELQ--SRKMRSAGVDRYFKK 151
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 29.2 bits (66), Expect = 1.3
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 6 ARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ + P +L +K + + + +L F +
Sbjct: 102 NKCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANL 154
Score = 26.9 bits (60), Expect = 8.0
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E+L +K + + + ++ + +
Sbjct: 112 GALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQAN 153
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 28.7 bits (64), Expect = 1.8
Identities = 5/49 (10%), Positives = 9/49 (18%)
Query: 10 HIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDH 58
+ P + L V + A L+
Sbjct: 109 RSQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPAS 157
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 28.4 bits (64), Expect = 2.0
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 169 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 210
G E+L L + A+ + I A L + L+
Sbjct: 95 GAVELLETLDKENLKWCIAT-SGGIDTATINLKALKLDINKI 135
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 27.9 bits (62), Expect = 3.2
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 141 HVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQIL 200
+ ++ F++I ++ + GV E++ L+E + + + + + +
Sbjct: 82 DIQEMYEEFEEILFAILPRYASP---INGVKEVIASLRERGIKIGSTTGYTREM-MDIVA 137
Query: 201 NLINLNQYF 209
L Y
Sbjct: 138 KEAALQGYK 146
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 27.4 bits (61), Expect = 3.5
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 186 AASRTSEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEER 245
+ T ++ + + +I +N+ + + + K K G+E + D
Sbjct: 16 LKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKE------WKKAGVEQLRLSTVDMTGV 69
Query: 246 NSHDVSPLGVTCIHVKKGMSHAVL 269
+ GV + + V
Sbjct: 70 PTLANLHKGVQFALKYQALGQCVY 93
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 27.9 bits (62), Expect = 4.7
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 202 LINLNQYF-----SNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 256
+ L +F S + P+ ++ L ++VF DD N LG+
Sbjct: 140 MCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMV 199
Query: 257 CIHVK 261
I V+
Sbjct: 200 TILVQ 204
Score = 27.6 bits (61), Expect = 5.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 78 GIEYKDMVFFDDEERNSHDVSPLGVTCILVED 109
++VF DD N LG+ ILV+D
Sbjct: 174 KASPSEVVFLDDIGANLKPARDLGMVTILVQD 205
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding
protein; polyamine binding, SYPH spermidine,
lipoprotein, transport protein; HET: MES; 1.78A
{Treponema pallidum}
Length = 343
Score = 26.9 bits (60), Expect = 9.0
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 32 AAASRTSEIQGAQQLLDLFNWNQYFDHKQIFPGQKTTHFANLKKATGIE 80
+ +Q Q +L L+NW Y I ++ ++
Sbjct: 12 SGIEGRGRLQTRQDVLYLYNWTYYTPTSLI---------KKFEQQYNVQ 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,344,372
Number of extensions: 255555
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 85
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)