RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8911
(280 letters)
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 83.0 bits (204), Expect = 4e-20
Identities = 76/149 (51%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Query: 133 LDYTLWPLHV-HDLVAPFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 190
LDYTLWP V + PF K V D +G I+ Y VPE+L L+ VAAASRT
Sbjct: 12 LDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRT 71
Query: 191 SEILHAKQILNLINLNQYFSNKEIYPGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDV 250
SEI A Q+L L +L +YF +EIYPG K THFE L TG+ + MVFFDDE RN DV
Sbjct: 72 SEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDV 131
Query: 251 SPLGVTCIHVKKGMSHAVLQKGLKQWASK 279
LGVTCIH++ GMS L +GL+ +A
Sbjct: 132 GRLGVTCIHIRDGMSLQTLTQGLETFAKA 160
Score = 65.6 bits (159), Expect = 9e-14
Identities = 61/112 (54%), Positives = 76/112 (67%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQLLDLFNWNQYFDHKQ 60
V D RG +I+ YP+VP +L L+ VAAASRTSEIQGA QLL+LF+ +YF ++
Sbjct: 35 GTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQRE 94
Query: 61 IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
I+PG K THF L TG+ + MVFFDDE RN DV LGVTCI + DGM+
Sbjct: 95 IYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMS 146
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 222
Score = 35.9 bits (81), Expect = 0.003
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 164 IKYYRGVPEILRYLKENKCLVAAAS---RTSEILHAKQILNLINLNQYFSNK-----EIY 215
R + + LK+ + + L+Q+F
Sbjct: 96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGM 155
Query: 216 PGPKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKKG 263
P+ + L + ++VF DD N +G+ I V
Sbjct: 156 IKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNT 203
Score = 35.1 bits (79), Expect = 0.005
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 9 AHIKYYPDVPGILKYLKQNNCLVAAAS---RTSEIQGAQQLLDLFNWNQYFDHKQ----- 60
A + LK+ + + + +Q+FD
Sbjct: 94 AARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQV 153
Query: 61 IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
+ + L + ++VF DD N +G+ ILV + +
Sbjct: 154 GMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNTAS 205
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 33.2 bits (74), Expect = 0.020
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 1 DKVVDARGAHIKYYPDVPGILKYLKQNNCLVAAASRTSEIQGAQQL---LDLFNWNQYFD 57
++ D + K + L++ A + T A++ + +FD
Sbjct: 88 KEIFDKAISARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFD 147
Query: 58 H-----KQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGMT 112
+ + + L ++VF DD N LG+ ILV+D T
Sbjct: 148 FLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDTDT 207
>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 25.7 bits (56), Expect = 1.9
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 76 ATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGM----TNAITLY 118
I+Y+D + P G IL DG+ + AI Y
Sbjct: 23 YLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARY 69
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 27.0 bits (59), Expect = 3.4
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 219 KTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI--HVKKGMSHAVLQKGLKQW 276
KT G ++ M + ++ + + C H M + + LK W
Sbjct: 113 KTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATMELRLYSEPLKDW 172
Query: 277 ASK 279
+
Sbjct: 173 LKR 175
>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides
polygyrus [TaxId: 6339]}
Length = 77
Score = 24.1 bits (52), Expect = 6.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 76 ATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDGM----TNAITLY 118
+Y+D+ + P G +L DG + AI Y
Sbjct: 24 LADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRY 70
>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 76
Score = 23.8 bits (51), Expect = 9.0
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 75 KATGIEYKDMVFFDDEERNSHDVSPLGVTCILVEDG----MTNAITLY 118
EY+D+ DE P+G +L DG + ++ +
Sbjct: 23 AYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVDGKRVHQSISMARF 70
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId:
562]}
Length = 218
Score = 25.2 bits (53), Expect = 9.0
Identities = 7/80 (8%), Positives = 19/80 (23%)
Query: 48 DLFNWNQYFDHKQIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCILV 107
K + + + G++ V +D + I+V
Sbjct: 128 RDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVV 187
Query: 108 EDGMTNAITLYGRSVFIISN 127
+ + +S+
Sbjct: 188 PAPEAQNDPRFVLANVKLSS 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,060,267
Number of extensions: 48644
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 10
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)