BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8912
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase
1 Of The Haloacid Dehalogenase Superfamily (Mgc5987)
Length = 187
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 93/141 (65%), Gaps = 2/141 (1%)
Query: 11 SVKKFPKMVVFDLDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLK 68
S+ + PK+ VFDLDYTLWP V V PF K V D +G ++ Y VPE+L+ L+
Sbjct: 22 SMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQ 81
Query: 69 ENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMV 128
AAASRTSEI A Q+L L +L +YF ++EIYPG K THFE L++ TGI + M+
Sbjct: 82 SLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMI 141
Query: 129 FFDDEERNSHDVSPLGVTCIH 149
FFDDE RN DVS LGVTCIH
Sbjct: 142 FFDDERRNIVDVSKLGVTCIH 162
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 85/122 (69%)
Query: 414 VLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF 473
V D G ++ Y +VP +LK L+ AAASRT+E+ A+QL++LF+ ++F H+EI+
Sbjct: 59 VRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIY 118
Query: 474 PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQ 533
PG K THF L++ TGI + M+FFDDE RN DVS LGVTCIH+++GM+ L +GL+
Sbjct: 119 PGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLET 178
Query: 534 WA 535
+A
Sbjct: 179 FA 180
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 304 VEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIF 363
V D +G + LY ++PE++K L+ + A ASRT I A LL L L +F ++EI+
Sbjct: 59 VRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIY 118
Query: 364 PAEKKIKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVH 410
P KI HF L++ + I + M+FFDDE RN +SKLGV I +
Sbjct: 119 PG-SKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQ 164
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 231 NVLDSNGMVIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEI 290
V D G ++ Y +VP +L+ L+ + AA S T I +LE+ + RYF H+EI
Sbjct: 58 TVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREI 117
Query: 291 YPRQKTKHLKK 301
YP K H ++
Sbjct: 118 YPGSKITHFER 128
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 192 RKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNGM 238
++ + I + M+FFDDE RN +SKLGV I + + M S G+
Sbjct: 130 QQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGL 176
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 142 bits (357), Expect = 7e-34, Method: Composition-based stats.
Identities = 75/140 (53%), Positives = 88/140 (62%), Gaps = 2/140 (1%)
Query: 12 VKKFPKMVVFDLDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKE 69
+ + PK+ VFDLDYTLWP V V PF K V D +G I+ Y VPE+L L+
Sbjct: 1 MTRLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQS 60
Query: 70 NKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVF 129
VAAASRTSEI A Q+L L +L +YF +EIYPG K THFE L TG+ + MVF
Sbjct: 61 LGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVF 120
Query: 130 FDDEERNSHDVSPLGVTCIH 149
FDDE RN DV LGVTCIH
Sbjct: 121 FDDENRNIIDVGRLGVTCIH 140
Score = 122 bits (305), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/122 (49%), Positives = 81/122 (66%)
Query: 414 VLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF 473
V D G I+ Y +VP +L L+ VAAASRT+E+ A+QL++LF+ ++F +EI+
Sbjct: 37 VRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIY 96
Query: 474 PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQ 533
PG K THF L TG+ + MVFFDDE RN DV LGVTCIH++DGMS L +GL+
Sbjct: 97 PGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLET 156
Query: 534 WA 535
+A
Sbjct: 157 FA 158
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 304 VEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIF 363
V D +G + LY ++PE++ L+ + +A ASRT I+ A LL L L +F +EI+
Sbjct: 37 VRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIY 96
Query: 364 PAEKKIKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHRD 412
P K+ HF L + + + MVFFDDE RN + +LGV I + RD
Sbjct: 97 PGS-KVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHI-RD 143
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 232 VLDSNGMVIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEIY 291
V D G I+ Y +VP +L L+ + VAA S T I +LE+ + +YF +EIY
Sbjct: 37 VRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIY 96
Query: 292 PRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASR----TVHIRNAYSL 347
P K H +R+ G + ++V + D N + R +HIR+ SL
Sbjct: 97 PGSKVTHF--ERLHHKTGVPFS------QMV-FFDDENRNIIDVGRLGVTCIHIRDGMSL 147
Query: 348 LHLL-GLSDF 356
L GL F
Sbjct: 148 QTLTQGLETF 157
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 197 IKYKDMVFFDDEERNARSISKLGVIGIQVMHSMT 230
+ + MVFFDDE RN + +LGV I + M+
Sbjct: 113 VPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMS 146
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 481 FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 520
+ ++ +A G D VFFDD N + LG+T I VKD
Sbjct: 154 YQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKD 193
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 113 FESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 148
++ + +A G D VFFDD N + LG+T I
Sbjct: 154 YQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSI 189
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 144 GVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRKDSKIKYKDMV 203
G CI W +M+SGR E+T + YF ++E+V + + A D KI
Sbjct: 155 GNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIIL---- 210
Query: 204 FFDDEERNARSISKLGVIGIQVMHSMTNVLD 234
EE+N S++ G G+ + N+++
Sbjct: 211 ----EEKNKVSMAPDGNGGLYRALAAQNIVE 237
>pdb|3SLR|A Chain A, Crystal Structure Of N-Terminal Part Of The Protein Bf1531
From Bacteroides Fragilis Containing Phosphatase Domain
Complexed With Mg
Length = 387
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 14 KFPKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCL 73
KF K ++ DLD T+W V D ++G + K + E ++ LK +
Sbjct: 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKA-----FTEFQEWVKKLKNRGII 274
Query: 74 VAAASRTSEI-------LHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKD 126
+A S+ +E + + +L L ++ + +N E K + ++++ I +
Sbjct: 275 IAVCSKNNEGKAKEPFERNPEXVLKLDDIAVFVANWE----NKADNIRTIQRTLNIGFDS 330
Query: 127 MVFFDDE--ERNSHDVSPLGVT 146
VF DD ERN GVT
Sbjct: 331 XVFLDDNPFERNXVREHVPGVT 352
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 144 GVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRKDSKIKYKDMV 203
G CI W +M+SGR E+T + YF ++E+V + + A D KI
Sbjct: 155 GNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIIL---- 210
Query: 204 FFDDEERNARSISKLGVIGIQVMHSMTNVLD 234
EE+N S++ G G+ + N+++
Sbjct: 211 ----EEKNKVSMAPDGNGGLYRALAAQNIVE 237
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 313 NLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY----KEIFPAEKK 368
++Y I +++K L+ + IK+ALAS + +N LL + L+ +FD E+ ++
Sbjct: 91 DVYPGILQLLKDLRSNKIKIALASAS---KNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 369 IKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHR 411
F + + + +D + ++I G + I V R
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR 190
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 313 NLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY----KEIFPAEKK 368
++Y I +++K L+ + IK+ALAS + +N LL + L+ +FD E+ ++
Sbjct: 91 DVYPGILQLLKDLRSNKIKIALASAS---KNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 369 IKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHR 411
F + + + +D + ++I G + I V R
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR 190
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 313 NLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY----KEIFPAEKK 368
++Y I +++K L+ + IK+ALAS + +N LL + L+ +FD E+ ++
Sbjct: 91 DVYPGILQLLKDLRSNKIKIALASAS---KNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 369 IKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHR 411
F + + + +D + ++I G + I V R
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR 190
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 325 LKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
+K +NIK+ L+S + +NA ++L+ LG+SD FD+
Sbjct: 128 VKSNNIKIGLSSAS---KNAINVLNHLGISDKFDF 159
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 344 AYSLLHLLGLSDFFD--------YKEIFPAEKKIKHFANLKKDSKI-KYKDMVFFDDEER 394
A L LLG++D FD + + +K F K+S + +Y++ F DD +
Sbjct: 174 AIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGK 233
Query: 395 NARSISKLGV 404
N + KLG+
Sbjct: 234 NIETGIKLGM 243
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 344 AYSLLHLLGLSDFFD--------YKEIFPAEKKIKHFANLKKDSKI-KYKDMVFFDDEER 394
A L LLG++D FD + + +K F K+S + +Y++ F DD +
Sbjct: 147 AIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGK 206
Query: 395 NARSISKLGV 404
N + KLG+
Sbjct: 207 NIETGIKLGM 216
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 344 AYSLLHLLGLSDFFD--------YKEIFPAEKKIKHFANLKKDSKI-KYKDMVFFDDEER 394
A L LLG++D FD + + +K F K+S + +Y++ F DD +
Sbjct: 147 AIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGK 206
Query: 395 NARSISKLGV 404
N + KLG+
Sbjct: 207 NIETGIKLGM 216
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 113 FESLKKATGIEYKDMVFFDDE 133
F+SL KATGI+ +++V++ DE
Sbjct: 270 FQSLLKATGIDLENIVYYKDE 290
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 301 KDRV-EDAKGTLLNLYRDIP---EIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDF 356
K RV E+ K L ++ P E ++++K IKLALA+ T R A L L L +
Sbjct: 68 KKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQ-REALERLRRLDLEKY 126
Query: 357 FD 358
FD
Sbjct: 127 FD 128
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 113 FESLKKATGIEYKDMVFFDDE 133
F+SL KATGI+ +++V++ DE
Sbjct: 278 FQSLLKATGIDLENIVYYKDE 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,352,741
Number of Sequences: 62578
Number of extensions: 707244
Number of successful extensions: 1546
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 59
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)